BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026096
         (243 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P0CB19|Y3081_ARATH Uncharacterized protein At3g50808 OS=Arabidopsis thaliana
           GN=At3g50808 PE=4 SV=1
          Length = 110

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 25/129 (19%)

Query: 113 IQKYLDITGVQTYIINSARIVFLNER---PQPRPGKGVTNTCLVCERSL--LDSFTFCSL 167
           + +Y+DI+G+  Y IN   IV++N+R      R    V + C +CE  +    S  FCS+
Sbjct: 1   MSQYMDISGIHLYSINGFPIVYINQRRGNNNHRSRSNVMHKCKICEWEIDAASSALFCSM 60

Query: 168 GCKIAGTSKNFKKRKMCKEMDQGSDAEISSNNGSSKSRTQSFSPSTPPPTAVSFRTAKRR 227
            CK            +  ++D     E+  N+    S     S     P     +   RR
Sbjct: 61  ECKFRSV--------LGSQLD-----ELMENS----SEVTEISEEIDEPV---MKKRHRR 100

Query: 228 KGVPHRAPM 236
           KG PHRAP 
Sbjct: 101 KGSPHRAPF 109


>sp|Q8L548|TCX3_ARATH Protein tesmin/TSO1-like CXC 3 OS=Arabidopsis thaliana GN=TCX3 PE=1
           SV=1
          Length = 609

 Score = 31.6 bits (70), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 165 CSLGCKIAGTSKNFKKRKMCKEMDQGSDAEISSNNGSSKSR--TQSFSPSTPPPTAVSFR 222
           CS+ C+  G  KN   RK     +Q  + E S   G+ K++   + F P+ PP T + FR
Sbjct: 437 CSINCRCEGC-KNAFGRKDGSLFEQDEENETSGTPGTKKTQQNVELFKPAAPPSTPIPFR 495


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,464,301
Number of Sequences: 539616
Number of extensions: 3772944
Number of successful extensions: 10496
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 10491
Number of HSP's gapped (non-prelim): 12
length of query: 243
length of database: 191,569,459
effective HSP length: 114
effective length of query: 129
effective length of database: 130,053,235
effective search space: 16776867315
effective search space used: 16776867315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)