Query 026096
Match_columns 243
No_of_seqs 146 out of 195
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 05:32:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ddt_A E3 ubiquitin-protein li 94.9 0.0094 3.2E-07 39.4 1.6 38 58-99 7-46 (48)
2 2d8u_A Ubiquitin ligase TRIM63 94.4 0.014 4.7E-07 40.4 1.5 36 59-98 10-47 (64)
3 2yvr_A Transcription intermedi 94.2 0.013 4.5E-07 38.8 1.1 36 59-98 8-44 (50)
4 1fre_A Nuclear factor XNF7; zi 94.0 0.025 8.7E-07 36.1 2.0 35 59-98 5-41 (42)
5 2did_A Tripartite motif protei 93.7 0.028 9.7E-07 37.7 1.9 36 59-99 10-47 (53)
6 2yrg_A Tripartite motif-contai 92.1 0.064 2.2E-06 37.2 1.9 36 59-99 16-53 (59)
7 2csv_A Tripartite motif protei 92.0 0.05 1.7E-06 38.7 1.3 35 59-98 20-55 (72)
8 2dja_A Midline-2; tripartite m 90.3 0.074 2.5E-06 38.5 0.8 38 59-100 20-59 (84)
9 2egm_A Tripartite motif-contai 90.1 0.041 1.4E-06 38.0 -0.7 35 59-98 20-56 (57)
10 2jun_A Midline-1; B-BOX, TRIM, 87.9 0.15 5E-06 37.7 1.0 37 58-98 60-98 (101)
11 2w0t_A Lethal(3)malignant brai 87.7 0.1 3.5E-06 35.5 0.0 25 146-170 4-34 (43)
12 2das_A Zinc finger MYM-type pr 83.1 0.74 2.5E-05 33.5 2.6 31 141-171 13-53 (62)
13 2l8e_A Polyhomeotic-like prote 66.1 0.76 2.6E-05 31.7 -1.1 24 148-171 18-46 (49)
14 1lv3_A Hypothetical protein YA 57.9 1.4 4.8E-05 32.4 -1.0 29 148-176 9-42 (68)
15 2jun_A Midline-1; B-BOX, TRIM, 39.8 11 0.00039 27.3 1.5 27 68-95 14-41 (101)
16 2hiy_A Hypothetical protein; C 38.6 12 0.00041 31.2 1.6 32 105-137 19-53 (183)
17 2yqp_A Probable ATP-dependent 34.6 17 0.00058 26.2 1.6 28 148-175 19-51 (60)
18 1tot_A CREB-binding protein; z 34.4 16 0.00055 24.8 1.5 28 72-100 19-48 (52)
19 3nis_A E3 ubiquitin-protein li 34.2 23 0.00079 26.4 2.4 30 67-96 16-50 (82)
20 3ny3_A E3 ubiquitin-protein li 33.5 23 0.00078 26.0 2.2 30 67-96 12-46 (75)
21 2yqq_A Zinc finger HIT domain- 27.0 21 0.00072 25.1 1.0 22 148-170 12-39 (56)
22 2dip_A Zinc finger SWIM domain 25.3 13 0.00045 28.5 -0.3 29 73-101 47-77 (98)
23 2fc7_A ZZZ3 protein; structure 24.3 32 0.0011 25.4 1.6 30 73-102 37-76 (82)
24 2nrr_A Uvrabc system protein C 21.1 16 0.00054 30.6 -0.7 27 115-141 21-47 (159)
25 1cn3_F Fragment of coat protei 20.7 35 0.0012 21.0 1.0 11 42-52 14-24 (29)
26 2ffw_A Midline-1; B-BOX, ring 20.5 36 0.0012 24.4 1.2 24 69-93 42-66 (78)
No 1
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=94.91 E-value=0.0094 Score=39.41 Aligned_cols=38 Identities=34% Similarity=0.789 Sum_probs=30.1
Q ss_pred ccccccccCCCCCcceeccccCCCcCCcccc-c-cCCCCceeEE
Q 026096 58 VQCKLHADAHKSECNMYCLDCMNGALCSLCL-S-LHRDHRAIQI 99 (243)
Q Consensus 58 ~~C~~H~~~~knE~N~FCldC~~~~lC~~Cl-~-~H~~HrvlQI 99 (243)
..|..|... ..++||.+|. ..+|..|. . .|++|+++.|
T Consensus 7 ~~C~~H~~e---~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l 46 (48)
T 3ddt_A 7 PMCKEHEDE---KINIYCLTCE-VPTCSMCKVFGIHKACEVAPL 46 (48)
T ss_dssp CBCSSSTTS---BCCEEETTTT-EEECHHHHHHSTTTTSCEEEC
T ss_pred CcCCCCCCc---cccEEcCCCC-eeEcccccCCCcCCCCcEEeC
Confidence 469988731 3679999997 89999996 3 8999987654
No 2
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=94.40 E-value=0.014 Score=40.36 Aligned_cols=36 Identities=36% Similarity=0.840 Sum_probs=28.3
Q ss_pred cccccccCCCCCcceeccccCCCcCCccccc--cCCCCceeE
Q 026096 59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQ 98 (243)
Q Consensus 59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~--~H~~HrvlQ 98 (243)
.|..|... ..++||.+|. ..+|..|.. .|++|+++-
T Consensus 10 ~C~~H~~e---~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~ 47 (64)
T 2d8u_A 10 MCKEHEDE---KINIYCLTCE-VPTCSMCKVFGIHKACEVAP 47 (64)
T ss_dssp CCSSCTTC---CCCSEESSSC-CCCCSHHHHSSSTTSSCEEC
T ss_pred cCcCcCCC---ccceEcCcCC-ceeCccccCCCcCCCCCeeC
Confidence 49999542 4689999998 899999963 899887553
No 3
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=94.25 E-value=0.013 Score=38.83 Aligned_cols=36 Identities=25% Similarity=0.596 Sum_probs=28.0
Q ss_pred cccccccCCCCCcceeccccCCCcCCccccc-cCCCCceeE
Q 026096 59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS-LHRDHRAIQ 98 (243)
Q Consensus 59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~-~H~~HrvlQ 98 (243)
.|..|... ..++||.+|. ..+|..|.. .|++|+++-
T Consensus 8 ~C~~H~~e---~l~lfC~~~~-~~iC~~C~~~~H~~H~~~~ 44 (50)
T 2yvr_A 8 YCNVHKHE---PLVLFCESCD-TLTCRDCQLNAHKDHQYQF 44 (50)
T ss_dssp BCSSSTTC---BCCEEETTTT-EEECHHHHHTTTTTCCEEE
T ss_pred cCcCCCCC---CEEEEeCCCC-EEEecccCCCcCCCCceec
Confidence 49989542 4689999997 889999964 788887654
No 4
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=94.00 E-value=0.025 Score=36.11 Aligned_cols=35 Identities=26% Similarity=0.624 Sum_probs=28.3
Q ss_pred cccccccCCCCCcceeccccCCCcCCccccc--cCCCCceeE
Q 026096 59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQ 98 (243)
Q Consensus 59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~--~H~~HrvlQ 98 (243)
.|..|.. ...+||.+|. ..+|..|.. .|++|+++.
T Consensus 5 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~ 41 (42)
T 1fre_A 5 KCSEHDE----RLKLYCKDDG-TLSCVICRDSLKHASHNFLP 41 (42)
T ss_dssp CCCSSCS----SCCCCCCSSS-SSSCCTTSSCSSCTTCCCCC
T ss_pred cchhhCC----eeeEEeCCCC-eEEeccCCCCCCCCCCcEec
Confidence 5888862 4689999997 889999964 799998753
No 5
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=93.69 E-value=0.028 Score=37.69 Aligned_cols=36 Identities=25% Similarity=0.719 Sum_probs=29.1
Q ss_pred cccccccCCCCCcceeccccCCCcCCccccc--cCCCCceeEE
Q 026096 59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQI 99 (243)
Q Consensus 59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~--~H~~HrvlQI 99 (243)
.|..|.. ...+||.+|. ..+|..|.. .|++|+++-|
T Consensus 10 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l 47 (53)
T 2did_A 10 LCPQHHE----ALSLFCYEDQ-EAVCLICAISHTHRAHTVVPL 47 (53)
T ss_dssp BCTTTCC----BCCEEESSSC-SEECHHHHTSSTTTTSCEEEC
T ss_pred cChhhCC----eeeEEeCCCC-eEEeccccCCCCCCCCcEeeH
Confidence 5999962 4679999997 889999964 8999987654
No 6
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.12 E-value=0.064 Score=37.15 Aligned_cols=36 Identities=25% Similarity=0.627 Sum_probs=29.5
Q ss_pred cccccccCCCCCcceeccccCCCcCCccccc--cCCCCceeEE
Q 026096 59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQI 99 (243)
Q Consensus 59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~--~H~~HrvlQI 99 (243)
.|..|.. ...+||.+|. ..+|..|.. .|++|+++.|
T Consensus 16 ~C~~H~e----~L~lfC~~d~-~~iC~~C~~s~eH~~H~~~~l 53 (59)
T 2yrg_A 16 HCARHGE----KLLLFCQEDG-KVICWLCERSQEHRGHHTFPT 53 (59)
T ss_dssp BCTTTCC----BCCEEETTTC-SEECHHHHTSTTTTTCCEEEC
T ss_pred cChhhCc----eeeeecCCCC-cEEecccCCCCcCCCCcEeeH
Confidence 4999963 4679999997 889999964 8999987655
No 7
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=92.01 E-value=0.05 Score=38.66 Aligned_cols=35 Identities=23% Similarity=0.758 Sum_probs=27.7
Q ss_pred cccccccCCCCCcceeccccCCCcCCccccc-cCCCCceeE
Q 026096 59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS-LHRDHRAIQ 98 (243)
Q Consensus 59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~-~H~~HrvlQ 98 (243)
.|..|.. ...+||.+|. ..+|..|.. .|++|+++-
T Consensus 20 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~H~~H~~~~ 55 (72)
T 2csv_A 20 KCPVHGK----TMELFCQTDQ-TCICYLCMFQEHKNHSTVT 55 (72)
T ss_dssp BCTTTCC----BCCEEESSSC-CEECHHHHHTTTSSSCEEE
T ss_pred cCcccCC----ceEEEeCCCC-eEEccccCCCCCCCCCEec
Confidence 5999942 4689999997 889999975 788876543
No 8
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=90.27 E-value=0.074 Score=38.47 Aligned_cols=38 Identities=34% Similarity=0.755 Sum_probs=29.6
Q ss_pred cccccccCCCCCcceeccccCCCcCCccccc--cCCCCceeEEE
Q 026096 59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQIR 100 (243)
Q Consensus 59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~--~H~~HrvlQIR 100 (243)
.|..|... ..++||.+|. ..+|..|.. .|++|+++-|-
T Consensus 20 ~C~~H~~e---~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l~ 59 (84)
T 2dja_A 20 TCLDHENE---KVNMYCVSDD-QLICALCKLVGRHRDHQVASLN 59 (84)
T ss_dssp CCSSCSSS---CCCEEETTTT-EEECHHHHHTSTTTTCCBCCCC
T ss_pred cCcCcCCc---cccEEcCCCC-ceEcccCcCCCCCCCCCccCHH
Confidence 59999531 3689999997 889999964 89998866543
No 9
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.06 E-value=0.041 Score=37.95 Aligned_cols=35 Identities=23% Similarity=0.626 Sum_probs=28.5
Q ss_pred cccccccCCCCCcceeccccCCCcCCccccc--cCCCCceeE
Q 026096 59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQ 98 (243)
Q Consensus 59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~--~H~~HrvlQ 98 (243)
.|..|.. ...+||.+|. ..+|..|.. .|++|+++.
T Consensus 20 ~C~~H~e----~L~lfC~~d~-~~iC~~C~~~~eH~~H~~~~ 56 (57)
T 2egm_A 20 ICPKHQE----ALKLFCEVDE-EAICVVCRESRSHKQHSVVP 56 (57)
T ss_dssp BCTTTCC----BCCEEETTTT-EEECHHHHHSHHHHSSCEEC
T ss_pred cChhhCc----eeeEEcCCCC-cEEecccCCCCCCCCCcEec
Confidence 4999952 4689999997 889999964 799998764
No 10
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=87.95 E-value=0.15 Score=37.74 Aligned_cols=37 Identities=38% Similarity=0.802 Sum_probs=29.2
Q ss_pred ccccccccCCCCCcceeccccCCCcCCcccc--ccCCCCceeE
Q 026096 58 VQCKLHADAHKSECNMYCLDCMNGALCSLCL--SLHRDHRAIQ 98 (243)
Q Consensus 58 ~~C~~H~~~~knE~N~FCldC~~~~lC~~Cl--~~H~~HrvlQ 98 (243)
..|..|... ..++||.+|. ..+|..|. ..|++|+++-
T Consensus 60 ~~C~~H~~e---~l~~fC~~~~-~~iC~~C~~~~~H~~H~~~~ 98 (101)
T 2jun_A 60 LMCLEHEDE---KVNMYCVTDD-QLICALCKLVGRHRDHQVAA 98 (101)
T ss_dssp CCCSSCSSS---CCCEEETTTT-EEECHHHHHHTTTSSSCBCC
T ss_pred CcCcCcCCC---cceEECCCCC-CccchhcCCCCCcCCCCeec
Confidence 369999642 3689999997 89999996 3899998654
No 11
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=87.71 E-value=0.1 Score=35.46 Aligned_cols=25 Identities=24% Similarity=0.635 Sum_probs=18.3
Q ss_pred CCCCcccccccc-cCC-----CCeeeecccc
Q 026096 146 GVTNTCLVCERS-LLD-----SFTFCSLGCK 170 (243)
Q Consensus 146 g~~~~Ce~C~R~-L~D-----~~rFCSL~CK 170 (243)
+....||.|++. +.. +-||||++|-
T Consensus 4 ~~~~~CE~CG~~g~~~~F~~ksKRFCS~~Ca 34 (43)
T 2w0t_A 4 SEPAVCEMCGIVGTREAFFSKTKRFCSVSCS 34 (43)
T ss_dssp CCEEECTTTCCEEETTTSCTTTSSSSSHHHH
T ss_pred CceehhhhhcCcchhhhhccCCcceechhhh
Confidence 345689999984 443 4489999995
No 12
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=83.13 E-value=0.74 Score=33.45 Aligned_cols=31 Identities=29% Similarity=0.558 Sum_probs=24.9
Q ss_pred CCCCCCCCCcccccccccCC----------CCeeeeccccc
Q 026096 141 PRPGKGVTNTCLVCERSLLD----------SFTFCSLGCKI 171 (243)
Q Consensus 141 ~r~~kg~~~~Ce~C~R~L~D----------~~rFCSL~CKv 171 (243)
.++.+...-+|+.|.+.|+. +-.|||..|-.
T Consensus 13 q~~~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~ 53 (62)
T 2das_A 13 QQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS 53 (62)
T ss_dssp CCCSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH
T ss_pred cCCCCccccChhhccchhhcCceeeeecCchhheechHHHc
Confidence 45667778899999999983 45799999963
No 13
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=66.09 E-value=0.76 Score=31.67 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=19.4
Q ss_pred CCcccccccccCC-----CCeeeeccccc
Q 026096 148 TNTCLVCERSLLD-----SFTFCSLGCKI 171 (243)
Q Consensus 148 ~~~Ce~C~R~L~D-----~~rFCSL~CKv 171 (243)
..+|+.|++.+.. +-+|||..|..
T Consensus 18 ~~~C~~CG~~i~~~~~~r~krFCS~sCR~ 46 (49)
T 2l8e_A 18 LLKCEYCGKYAPAEQFRGSKRFCSMTCAK 46 (49)
T ss_dssp EEECTTTCCEEEGGGCTTTSSSCSHHHHH
T ss_pred CCcChhccCccccccCCCCCccCCHHHHh
Confidence 4579999999874 35899999974
No 14
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=57.87 E-value=1.4 Score=32.41 Aligned_cols=29 Identities=28% Similarity=0.799 Sum_probs=22.2
Q ss_pred CCcccccccccC----CCC-eeeecccccccccc
Q 026096 148 TNTCLVCERSLL----DSF-TFCSLGCKIAGTSK 176 (243)
Q Consensus 148 ~~~Ce~C~R~L~----D~~-rFCSL~CKv~~~~~ 176 (243)
...|-+|++... -.| .|||-.||..+..+
T Consensus 9 ~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~iDLg~ 42 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGE 42 (68)
T ss_dssp EEECTTTCCEEECSSSSSCCSSSSHHHHHHHHSC
T ss_pred cCcCCCCCCcccccccCCCCcccCHHHHhhhHHH
Confidence 457999999985 244 69999999876553
No 15
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=39.84 E-value=11 Score=27.31 Aligned_cols=27 Identities=22% Similarity=0.646 Sum_probs=21.6
Q ss_pred CCCcceeccccCCCcCCcccccc-CCCCc
Q 026096 68 KSECNMYCLDCMNGALCSLCLSL-HRDHR 95 (243)
Q Consensus 68 knE~N~FCldC~~~~lC~~Cl~~-H~~Hr 95 (243)
+.+...+|++|. ..||..|+.. |..-.
T Consensus 14 ~~~av~~C~~C~-~~~C~~Cl~~~h~~~~ 41 (101)
T 2jun_A 14 AQDAVKTCVTCE-VSYCDECLKATHPNKK 41 (101)
T ss_dssp CCBCCEEETTTT-EEECHHHHHHHSCSCS
T ss_pred CCCceEECCcCC-hHHhHHHCHHHhccCC
Confidence 346679999997 8999999986 87433
No 16
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=38.58 E-value=12 Score=31.24 Aligned_cols=32 Identities=28% Similarity=0.527 Sum_probs=25.2
Q ss_pred cceeecchhhhh---hcccceeeEEecCceEEEeeC
Q 026096 105 HDVIRVSEIQKY---LDITGVQTYIINSARIVFLNE 137 (243)
Q Consensus 105 hdVVRv~DIqkl---lD~S~IQtYvINsakVVFLn~ 137 (243)
++-|.+.|+..+ +-..+|+|| |||.-|||=-.
T Consensus 19 ~nkv~MadLr~~l~~lGf~~V~Ty-I~SGNvvF~s~ 53 (183)
T 2hiy_A 19 KNKVVMAELRQELTNLGLEKVESY-INSGNIFFTSI 53 (183)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEE-TTTTEEEEEEC
T ss_pred CCcccHHHHHHHHHHcCCccceEE-EecCCEEEecC
Confidence 345677887775 678999999 89999999644
No 17
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.56 E-value=17 Score=26.16 Aligned_cols=28 Identities=36% Similarity=0.577 Sum_probs=21.3
Q ss_pred CCcccccccccC---C--CCeeeeccccccccc
Q 026096 148 TNTCLVCERSLL---D--SFTFCSLGCKIAGTS 175 (243)
Q Consensus 148 ~~~Ce~C~R~L~---D--~~rFCSL~CKv~~~~ 175 (243)
.+.|-+|+|-=. | .-+-|||.||-..+.
T Consensus 19 ePvCvvCGryGeYICd~Td~DVCSlECK~~~l~ 51 (60)
T 2yqp_A 19 EPICVVCGRYGEYICDKTDEDVCSLECKAKHLL 51 (60)
T ss_dssp SCCCSSSSSCCSEECSSSCCEESSHHHHHHHHH
T ss_pred CceEEEecCccceeecCCCcchhhHHHHHHHHH
Confidence 566999998643 3 579999999976554
No 18
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=34.42 E-value=16 Score=24.81 Aligned_cols=28 Identities=25% Similarity=0.579 Sum_probs=22.1
Q ss_pred ceeccccCCCcCCccccc--cCCCCceeEEE
Q 026096 72 NMYCLDCMNGALCSLCLS--LHRDHRAIQIR 100 (243)
Q Consensus 72 N~FCldC~~~~lC~~Cl~--~H~~HrvlQIR 100 (243)
-+-|..|.+--||..|.. .| .|+.++|.
T Consensus 19 R~~C~~C~dyDLC~~C~~~~~H-~H~m~~~~ 48 (52)
T 1tot_A 19 RWHCTVCEDYDLCINCYNTKSH-THKMVKWG 48 (52)
T ss_dssp EEEESSSSSCEECHHHHHHHCC-CSSEEEEC
T ss_pred eEEcCCCCCchhHHHHHhCCCC-CCceEEec
Confidence 377999987789999965 55 78888774
No 19
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=34.22 E-value=23 Score=26.44 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=21.5
Q ss_pred CCCCcceeccccCCC---cCCccccc--cCCCCce
Q 026096 67 HKSECNMYCLDCMNG---ALCSLCLS--LHRDHRA 96 (243)
Q Consensus 67 ~knE~N~FCldC~~~---~lC~~Cl~--~H~~Hrv 96 (243)
.++|--..|.+|..+ +||..|-. .|.+|++
T Consensus 16 ~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~ 50 (82)
T 3nis_A 16 KIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHV 50 (82)
T ss_dssp CTTCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCE
T ss_pred cCCCEEEEeeccCCCCCceEchhhCCCCCcCCceE
Confidence 456778899999744 46677744 7888864
No 20
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=33.51 E-value=23 Score=25.98 Aligned_cols=30 Identities=40% Similarity=0.782 Sum_probs=21.9
Q ss_pred CCCCcceeccccCCC---cCCccccc--cCCCCce
Q 026096 67 HKSECNMYCLDCMNG---ALCSLCLS--LHRDHRA 96 (243)
Q Consensus 67 ~knE~N~FCldC~~~---~lC~~Cl~--~H~~Hrv 96 (243)
.++|-...|.+|..+ ++|..|-. .|.+|++
T Consensus 12 ~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~ 46 (75)
T 3ny3_A 12 KVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRY 46 (75)
T ss_dssp CTTCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCE
T ss_pred cCCCEEEECccCCCCCCeeEChHHCCCCCcCCceE
Confidence 456888999999744 56677743 7888864
No 21
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.01 E-value=21 Score=25.05 Aligned_cols=22 Identities=27% Similarity=0.718 Sum_probs=16.2
Q ss_pred CCcccccccccCC------CCeeeecccc
Q 026096 148 TNTCLVCERSLLD------SFTFCSLGCK 170 (243)
Q Consensus 148 ~~~Ce~C~R~L~D------~~rFCSL~CK 170 (243)
...|.+|+. ..- ..+||||.|-
T Consensus 12 ~~~C~vC~~-~~kY~CPrC~~~yCSl~C~ 39 (56)
T 2yqq_A 12 TVVCVICLE-KPKYRCPACRVPYCSVVCF 39 (56)
T ss_dssp CCCCTTTCS-CCSEECTTTCCEESSHHHH
T ss_pred CCccCcCcC-CCeeeCCCCCCCeeCHHHH
Confidence 446888988 322 4789999996
No 22
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=25.25 E-value=13 Score=28.47 Aligned_cols=29 Identities=24% Similarity=0.591 Sum_probs=21.9
Q ss_pred eeccccCCCcCCccccc--cCCCCceeEEEe
Q 026096 73 MYCLDCMNGALCSLCLS--LHRDHRAIQIRR 101 (243)
Q Consensus 73 ~FCldC~~~~lC~~Cl~--~H~~HrvlQIRR 101 (243)
.-|+.|.+--||..|.. .|..|+.++|-+
T Consensus 47 ykC~~C~d~DLC~~C~~~~~H~~H~f~~i~~ 77 (98)
T 2dip_A 47 YKCTECIEYHLCQECFDSYCHLSHTFTFREK 77 (98)
T ss_dssp EEESSSSSCEEEHHHHHTTSGGGSCEEECCS
T ss_pred EECCCCCCccHHHHHHccCCCCCCCeeEecC
Confidence 55888887789999954 577787766655
No 23
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=24.28 E-value=32 Score=25.38 Aligned_cols=30 Identities=37% Similarity=0.701 Sum_probs=21.8
Q ss_pred eeccccCC---CcCCccccc------cC-CCCceeEEEec
Q 026096 73 MYCLDCMN---GALCSLCLS------LH-RDHRAIQIRRS 102 (243)
Q Consensus 73 ~FCldC~~---~~lC~~Cl~------~H-~~HrvlQIRRs 102 (243)
+-|++|.+ --||..|.. .| ..|+...|.++
T Consensus 37 ykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~ 76 (82)
T 2fc7_A 37 WHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRS 76 (82)
T ss_dssp EEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSC
T ss_pred EECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCC
Confidence 56899986 579999953 45 47887777654
No 24
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=21.06 E-value=16 Score=30.61 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=20.9
Q ss_pred hhhcccceeeEEecCceEEEeeCCCCC
Q 026096 115 KYLDITGVQTYIINSARIVFLNERPQP 141 (243)
Q Consensus 115 kllD~S~IQtYvINsakVVFLn~RPq~ 141 (243)
+.||+|.||.--.-++-|||-+.+|.+
T Consensus 21 E~fDiSh~~G~~~VasmVVf~~g~p~K 47 (159)
T 2nrr_A 21 EGIDISHLQGKYTVASLVVFEDGFPKK 47 (159)
T ss_dssp EEEEEECC---CCEEEEEEEETTEECG
T ss_pred EEEECCccCCccceEEEEEEeCCccCh
Confidence 359999999988889999999998864
No 25
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=20.66 E-value=35 Score=20.96 Aligned_cols=11 Identities=36% Similarity=0.945 Sum_probs=8.5
Q ss_pred CCCCCcHHHHh
Q 026096 42 NKWPPWLRPLL 52 (243)
Q Consensus 42 ~~~P~WL~~LL 52 (243)
...|.|+-+|+
T Consensus 14 rvtpdwmlpli 24 (29)
T 1cn3_F 14 RVTPDWMLPLI 24 (29)
T ss_dssp CCEEGGGHHHH
T ss_pred ccCchhhHHHH
Confidence 34599999886
No 26
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=20.46 E-value=36 Score=24.43 Aligned_cols=24 Identities=25% Similarity=0.686 Sum_probs=20.3
Q ss_pred CCcceeccccCCCcCCcccccc-CCC
Q 026096 69 SECNMYCLDCMNGALCSLCLSL-HRD 93 (243)
Q Consensus 69 nE~N~FCldC~~~~lC~~Cl~~-H~~ 93 (243)
..-...|+.|. .++|..|+.. |..
T Consensus 42 ~~A~ksCl~C~-~s~C~~hl~~~H~~ 66 (78)
T 2ffw_A 42 QDAVKTCVTCE-VSYCDECLKATHPN 66 (78)
T ss_dssp CBCCEEETTTT-EEECHHHHHHHSCC
T ss_pred CCCeeEccCcc-chhhhhhhHhhcCC
Confidence 46678999998 8999999996 865
Done!