BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026098
MMMTSKTIDLLRNELPVEQESLFLSGDVKTGLVLVDVVNGFCTVGSGNLPDGQISEMVDE
SVRLARVFCEKKWPVFAFLDTHYPDVPEPPYPPHCISGTDESNLVPELQWLENETNVTLR
RKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLA
PLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSFGAL
KEP

High Scoring Gene Products

Symbol, full name Information P value
NIC1
AT2G22570
protein from Arabidopsis thaliana 1.4e-78
pncA
Pyrazinamidase/nicotinamidase PncA (PZase)
protein from Mycobacterium tuberculosis 0.00048

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026098
        (243 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2041298 - symbol:NIC1 "nicotinamidase 1" speci...   790  1.4e-78   1
UNIPROTKB|Q50575 - symbol:pncA "Pyrazinamidase/nicotinami...   106  0.00048   1


>TAIR|locus:2041298 [details] [associations]
            symbol:NIC1 "nicotinamidase 1" species:3702 "Arabidopsis
            thaliana" [GO:0003824 "catalytic activity" evidence=IEA;ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
            evidence=ISM] [GO:0008152 "metabolic process" evidence=IEA;ISS]
            [GO:0008936 "nicotinamidase activity" evidence=IMP;IDA] [GO:0009737
            "response to abscisic acid stimulus" evidence=IMP] [GO:0019365
            "pyridine nucleotide salvage" evidence=IMP] InterPro:IPR000868
            Pfam:PF00857 GO:GO:0009737 EMBL:CP002685 EMBL:AC006592
            Gene3D:3.40.50.850 SUPFAM:SSF52499 GO:GO:0008936 EMBL:BT002359
            IPI:IPI00540491 RefSeq:NP_565539.1 UniGene:At.39419
            ProteinModelPortal:Q8S8F9 SMR:Q8S8F9 PRIDE:Q8S8F9
            EnsemblPlants:AT2G22570.1 GeneID:816789 KEGG:ath:AT2G22570
            TAIR:At2g22570 InParanoid:Q8S8F9 OMA:CATFDLP PhylomeDB:Q8S8F9
            ProtClustDB:PLN02743 Genevestigator:Q8S8F9 GO:GO:0019365
            Uniprot:Q8S8F9
        Length = 244

 Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
 Identities = 149/242 (61%), Positives = 191/242 (78%)

Query:     2 MMTSKTI-DLLRNELPV-EQESLFLSGDVKTGLVLVDVVNGFCTVGSGNL-P---DGQIS 55
             M   +TI D L+ ++PV E+E L L+ D   GLV+VDVVNGFCT+GSGN+ P   + QIS
Sbjct:     1 MANHETIFDQLKKQIPVDEEEPLILNRDSSVGLVIVDVVNGFCTIGSGNMAPTKHNEQIS 60

Query:    56 EMVDESVRLARVFCEKKWPVFAFLDTHYXXXXXXXXXXHCISGTDESNLVPELQWLENET 115
             +MV+ES +LAR FC++KWPV AF+D+H+          HCI GT+ES LVP L+WLE+E 
Sbjct:    61 KMVEESAKLAREFCDRKWPVLAFIDSHHPDIPERPYPPHCIIGTEESELVPALKWLESED 120

Query:   116 NVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARN 175
               TLRRKDCI+GF+GS+E DGSNVFV+WVK  QIK ++V+GICTD+CV DFV + LSARN
Sbjct:   121 CATLRRKDCINGFVGSMESDGSNVFVDWVKEKQIKVIVVVGICTDICVFDFVATALSARN 180

Query:   176 RGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGV 235
              G L+P+EDV+VYSRGCAT+D P+HVAK+IK A  HPQ+LMHH+GL++AKGRGA+VVS +
Sbjct:   181 HGVLSPVEDVVVYSRGCATFDLPLHVAKDIKGAQAHPQELMHHVGLYMAKGRGAQVVSKI 240

Query:   236 SF 237
             SF
Sbjct:   241 SF 242


>UNIPROTKB|Q50575 [details] [associations]
            symbol:pncA "Pyrazinamidase/nicotinamidase" species:1773
            "Mycobacterium tuberculosis" [GO:0005506 "iron ion binding"
            evidence=IDA] [GO:0006769 "nicotinamide metabolic process"
            evidence=IDA] [GO:0008936 "nicotinamidase activity" evidence=IDA]
            [GO:0016811 "hydrolase activity, acting on carbon-nitrogen (but not
            peptide) bonds, in linear amides" evidence=IDA] [GO:0016999
            "antibiotic metabolic process" evidence=IDA] [GO:0030145 "manganese
            ion binding" evidence=IDA] [GO:0034355 "NAD salvage" evidence=IDA]
            InterPro:IPR000868 Pfam:PF00857 EMBL:AE000516
            GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0005506
            EMBL:BX842578 GO:GO:0030145 GO:GO:0006769 GO:GO:0016999
            Gene3D:3.40.50.850 SUPFAM:SSF52499 GO:GO:0034355
            HOGENOM:HOG000078666 GO:GO:0008936 KO:K08281 OMA:DKEAYSG
            EMBL:AL123456 EMBL:U59967 EMBL:AY743292 EMBL:AY743309 EMBL:FJ151184
            EMBL:FJ151191 EMBL:JX303203 EMBL:JX303204 EMBL:JX303205
            EMBL:JX303206 EMBL:JX303207 EMBL:JX303209 EMBL:JX303210
            EMBL:JX303211 EMBL:JX303215 EMBL:JX303218 EMBL:JX303220
            EMBL:JX303222 EMBL:JX303224 EMBL:JX303225 EMBL:JX303226
            EMBL:JX303227 EMBL:JX303228 PIR:B70944 RefSeq:NP_216559.1
            RefSeq:NP_336568.1 RefSeq:YP_006515455.1 PDB:3PL1 PDBsum:3PL1
            SMR:Q50575 EnsemblBacteria:EBMYCT00000000137
            EnsemblBacteria:EBMYCT00000070085 GeneID:13316846 GeneID:888260
            GeneID:926645 KEGG:mtc:MT2103 KEGG:mtu:Rv2043c KEGG:mtv:RVBD_2043c
            PATRIC:18126388 TubercuList:Rv2043c ProtClustDB:CLSK791588
            ChEMBL:CHEMBL1697663 Uniprot:Q50575
        Length = 186

 Score = 106 (42.4 bits), Expect = 0.00048, P = 0.00048
 Identities = 40/141 (28%), Positives = 63/141 (44%)

Query:    32 LVLVDVVNGFCTVGSGNLPDGQ-----ISEMVDESVRLARVFCEKKWPVFAFLDTHYXXX 86
             L++VDV N FC  GS  +  G      IS+ + E+     V   K + +      H+   
Sbjct:     4 LIIVDVQNDFCEGGSLAVTGGAALARAISDYLAEAADYHHVVATKDFHIDP--GDHFSGT 61

Query:    87 XXXXXXX--HCISGTDESNLVPELQWLENETNVTLRRK--DCIDGFLGSVEKDGSNVFVN 142
                      HC+SGT  ++  P L     E  V  +        GF G V+++G+ + +N
Sbjct:    62 PDYSSSWPPHCVSGTPGADFHPSLDTSAIEA-VFYKGAYTGAYSGFEG-VDENGTPL-LN 118

Query:   143 WVKSNQIKNVLVLGICTDVCV 163
             W++   +  V V+GI TD CV
Sbjct:   119 WLRQRGVDEVDVVGIATDHCV 139


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.139   0.425    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      243       233   0.00086  113 3  11 22  0.39    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  189 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.49u 0.17s 18.66t   Elapsed:  00:00:01
  Total cpu time:  18.49u 0.17s 18.66t   Elapsed:  00:00:01
  Start:  Tue May 21 01:59:10 2013   End:  Tue May 21 01:59:11 2013

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