BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026098
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PL1|A Chain A, Determination Of The Crystal Structure Of The
Pyrazinamidase From M.Tuberculosis : A
Structure-Function Analysis For Prediction Resistance To
Pyrazinamide
Length = 186
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 8/138 (5%)
Query: 32 LVLVDVVNGFCTVGSGNLPDGQ-----ISEMVDESVRLARVFCEKKWPVFAFLDTHYXXX 86
L++VDV N FC GS + G IS+ + E+ V K + +
Sbjct: 4 LIIVDVQNDFCEGGSLAVTGGAALARAISDYLAEAADYHHVVATKDFHIDPGDHFSGTPD 63
Query: 87 XXXXXXXHCISGTDESNLVPELQWLENETNVTL-RRKDCIDGFLGSVEKDGSNVFVNWVK 145
HC+SGT ++ P L E GF G V+++G+ + NW++
Sbjct: 64 YSSSWPPHCVSGTPGADFHPSLDTSAIEAVFYKGAYTGAYSGFEG-VDENGTPLL-NWLR 121
Query: 146 SNQIKNVLVLGICTDVCV 163
+ V V+GI TD CV
Sbjct: 122 QRGVDEVDVVGIATDHCV 139
>pdb|2WT9|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
pdb|2WT9|B Chain B, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
Length = 235
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 73/183 (39%), Gaps = 27/183 (14%)
Query: 20 ESLFLSGDVK-------TGLVLVDVVNGFCTVGSGNLPDGQ-----ISEMVD--ESVRLA 65
E+L+ G +K + LV+VDV NGF G+ + D I+++ E+V L
Sbjct: 14 ENLYFQGHMKMNKQPQNSALVVVDVQNGFTPGGNLAVADADTIIPTINQLAGCFENVVLT 73
Query: 66 RVFCEKKWPVFA--------FLDTHYXXXXXXXXXXHCISGTDESNLVPELQWLENETNV 117
+ + FA F HCI GT ++ P+L + +
Sbjct: 74 QDWHPDNHISFAANHPGKQPFETIELDYGSQVLWPKHCIQGTHDAEFHPDLNIPTAQLII 133
Query: 118 TLRRKDCIDGFLGSVEKDGSNV--FVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARN 175
ID + +E D + + ++K I V V+GI TD CV + L A
Sbjct: 134 RKGFHAHIDSYSAFMEADHTTMTGLTGYLKERGIDTVYVVGIATDFCV---AWTALDAVK 190
Query: 176 RGF 178
+GF
Sbjct: 191 QGF 193
>pdb|2WTA|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
Length = 213
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 19/167 (11%)
Query: 29 KTGLVLVDVVNGFCTVGSGNLPDGQ-----ISEMVD--ESVRLARVFCEKKWPVFA---- 77
+ LV+VDV NGF G+ + D I+++ E+V L + + FA
Sbjct: 7 NSALVVVDVQNGFTPGGNLAVADADTIIPTINQLAGCFENVVLTQDWHPDNHISFAANHP 66
Query: 78 ----FLDTHYXXXXXXXXXXHCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVE 133
F HCI GT ++ P+L + + ID + +E
Sbjct: 67 GKQPFETIELDYGSQVLWPKHCIQGTHDAEFHPDLNIPTAQLIIRKGFHAHIDSYSAFME 126
Query: 134 KDGSNV--FVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGF 178
D + + ++K I V V+GI TD C + + + L A +GF
Sbjct: 127 ADHTTMTGLTGYLKERGIDTVYVVGIATDFCXVAW--TALDAVKQGF 171
>pdb|3HB7|A Chain A, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|C Chain C, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|B Chain B, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|D Chain D, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|E Chain E, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|F Chain F, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|G Chain G, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|H Chain H, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
Length = 204
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 94 HCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVL 153
H + GT S+ +PEL E+E V RR GF ++K I V+
Sbjct: 75 HAVKGTWGSDFIPELYPQEDEYIVQKRRH---SGF-------AHTDLDLYLKEEGIDTVV 124
Query: 154 VLGICTDVCVLDFVCSTLS 172
+ G+ T+VCV L+
Sbjct: 125 LTGVWTNVCVRSTATDALA 143
>pdb|4FZ2|A Chain A, Crystal Structure Of The Fourth Type Of Archaeal Trna
Splicing Endonuclease From Candidatus Micrarchaeum
Acidiphilum Arman-2
pdb|4FZ2|B Chain B, Crystal Structure Of The Fourth Type Of Archaeal Trna
Splicing Endonuclease From Candidatus Micrarchaeum
Acidiphilum Arman-2
Length = 395
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 7 TIDLLRNELPVEQESLFLSGDVKTGLVLVDVVNGFCT-VGSGNLPDGQISEMVDESVRL- 64
TID+LRN E + L +V+ GL LVDV CT S + I+ + + +L
Sbjct: 21 TIDILRNGYFGEYRAGKLMLEVEEGLYLVDVRKAACTDENSKPVSFNDIAGVFIKRKKLM 80
Query: 65 ARVFCEKKW 73
AR F K W
Sbjct: 81 ARYFTFKDW 89
>pdb|1YAC|A Chain A, The 1.8 Angstrom Crystal Structure Of The Ycac Gene
Product From Escherichia Coli Reveals An Octameric
Hydrolase Of Unknown Specificity
pdb|1YAC|B Chain B, The 1.8 Angstrom Crystal Structure Of The Ycac Gene
Product From Escherichia Coli Reveals An Octameric
Hydrolase Of Unknown Specificity
Length = 208
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 140 FVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYD 196
FV VK+ K +++ G+ T+VCV LSA GF DV V + T++
Sbjct: 96 FVKAVKATGKKQLIIAGVVTEVCV---AFPALSAIEEGF-----DVFVVTDASGTFN 144
>pdb|3O90|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
Length = 211
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 67/157 (42%), Gaps = 20/157 (12%)
Query: 31 GLVLVDVVNGFCTVGSGNLPDGQISEMVDESV-RLARVFCEKKWPVFAFLDTHYXXX--- 86
L+ +D F SG L G ++ + +++ ++ R+ E+ +F +D H
Sbjct: 24 ALISIDYTEDFV-ADSGKLTAGAPAQAISDAISKVTRLAFERGDYIFFTIDAHEENDCFH 82
Query: 87 -XXXXXXXHCISGTDESNLVPEL----QWLENETNVTLRRKDCIDGFLGSVEKDGSNVFV 141
H + GT NL +L Q +++ V K F G+++ +
Sbjct: 83 PESKLFPPHNLIGTSGRNLYGDLGIFYQEHGSDSRVFWMDKRHYSAF------SGTDLDI 136
Query: 142 NWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGF 178
++ ++ V++ G+ TD+CVL + + A N G+
Sbjct: 137 R-LRERRVSTVILTGVLTDICVLH---TAIDAYNLGY 169
>pdb|3S2S|A Chain A, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|B Chain B, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|C Chain C, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|D Chain D, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
Length = 217
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 14/116 (12%)
Query: 94 HCISGTDESNLVPEL----QWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQI 149
H I GT +L L Q EN+ V K F G+++ + ++ ++
Sbjct: 105 HNIKGTSGRDLYGALADFYQKHENDKRVFWMDKRHYSAF------SGTDLDIR-LRERRV 157
Query: 150 KNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNI 205
V++ G+ TD+CVL + + A N G+ + V S + F ++ +N+
Sbjct: 158 DTVVLTGVLTDICVL---HTAIDAYNLGYQIEVVQSAVASLSQENHQFALNHLQNV 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,068,983
Number of Sequences: 62578
Number of extensions: 279346
Number of successful extensions: 530
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 10
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)