BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026098
         (243 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O32091|PNCA_BACSU Uncharacterized isochorismatase family protein PncA OS=Bacillus
           subtilis (strain 168) GN=pncA PE=3 SV=1
          Length = 183

 Score = 57.8 bits (138), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 27/184 (14%)

Query: 28  VKTGLVLVDVVNGFCTVGSGNLPDGQISEMVDES-VRLARVFCEKKWPVFAFLDTHYPDV 86
           +K  L+ +D  N F     G L  G+   M++E+ V L + F      V   +D+H    
Sbjct: 1   MKKALICIDYTNDF-VASDGKLTCGEPGRMIEEAIVNLTKEFITNGDYVVLAVDSHDEGD 59

Query: 87  PEPP----YPPHCISGTDESNL----VPELQWLENETNVTLRRKDCIDGFLGS-VEKDGS 137
              P    +PPH I GT+  +L    +P  Q  E+E NV    K     F G+ +E    
Sbjct: 60  QYHPETRLFPPHNIKGTEGKDLYGKLLPLYQKHEHEPNVYYMEKTRYSAFAGTDLELK-- 117

Query: 138 NVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDF 197
                 ++  QI  + + G+CTD+CVL    + + A N+GF      ++V+ +  A+++ 
Sbjct: 118 ------LRERQIGELHLAGVCTDICVLH---TAVDAYNKGF-----RIVVHKQAVASFNQ 163

Query: 198 PVHV 201
             H 
Sbjct: 164 EGHA 167


>sp|P21369|PNCA_ECOLI Pyrazinamidase/nicotinamidase OS=Escherichia coli (strain K12)
           GN=pncA PE=3 SV=1
          Length = 213

 Score = 41.6 bits (96), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 30/158 (18%)

Query: 31  GLVLVDVVNGFCTVGSGNLPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPD----- 85
            L+LVD+ N FC  G+  +P+G     VD + RL      +   V A  D H  +     
Sbjct: 5   ALLLVDLQNDFCAGGALAVPEG--DSTVDVANRLIDWCQSRGEAVIASQDWHPANHGSFA 62

Query: 86  ---------------VPEPPYPPHCISGTDESNLVPELQWLENETNVTLRRK-----DCI 125
                          +P+  +P HC+  ++ + L P L   +        +      D  
Sbjct: 63  SQHGVEPYTPGQLDGLPQTFWPDHCVQNSEGAQLHPLLH--QKAIAAVFHKGENPLVDSY 120

Query: 126 DGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCV 163
             F  +  +  +++  +W++ ++I  ++V+G+ TD CV
Sbjct: 121 SAFFDNGRRQKTSL-DDWLRDHEIDELIVMGLATDYCV 157


>sp|Q1RK13|Y220_RICBR Putative ankyrin repeat protein RBE_0220 OS=Rickettsia bellii
           (strain RML369-C) GN=RBE_0220 PE=4 SV=1
          Length = 826

 Score = 35.0 bits (79), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 79  LDTHYPDVPEPPYPPHCISGTDESNLVPELQWLENETNVTLRR 121
           L+T+  + P PP PP  I  T   N   +  W+++E N+TL +
Sbjct: 640 LNTNQSNNPLPPKPPRLIKNTTTQNEENKKTWIKSEANLTLSQ 682


>sp|Q6CLQ8|GEP3_KLULA Genetic interactor of prohibitins 3, mitochondrial OS=Kluyveromyces
           lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
           1267 / NRRL Y-1140 / WM37) GN=GEP3 PE=3 SV=2
          Length = 550

 Score = 32.7 bits (73), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 184 DVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGL 221
           D I ++R  ++ DFP+H   +IK ALPH  ++ H + L
Sbjct: 93  DAISHNRYNSS-DFPIHSFNDIKGALPHAANVYHVVSL 129


>sp|Q8YPR3|COFH_NOSS1 FO synthase subunit 2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
           GN=cofH PE=3 SV=1
          Length = 391

 Score = 31.6 bits (70), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 8/80 (10%)

Query: 6   KTIDLLRNELPVEQESLFLSGDVK-----TGLVLVDVVNGFCTVGSGNLPDGQISEMVDE 60
           K ++ ++ E P      F   +V+      GL  VDV++     G  +LP G  +E++D+
Sbjct: 132 KLVETIKQEYPQIHLHAFSPQEVQFIARVDGLEYVDVISALQNAGVNSLP-GTAAEVLDD 190

Query: 61  SVRLARVFCEKKWPVFAFLD 80
            VR  R+ C +K     +L+
Sbjct: 191 EVR--RILCPEKINTATWLE 208


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.139    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,287,820
Number of Sequences: 539616
Number of extensions: 4253100
Number of successful extensions: 9010
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9005
Number of HSP's gapped (non-prelim): 5
length of query: 243
length of database: 191,569,459
effective HSP length: 114
effective length of query: 129
effective length of database: 130,053,235
effective search space: 16776867315
effective search space used: 16776867315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)