Query 026098
Match_columns 243
No_of_seqs 106 out of 1315
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:44:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02743 nicotinamidase 100.0 5.9E-50 1.3E-54 350.7 23.4 234 3-236 1-238 (239)
2 PRK11609 nicotinamidase/pyrazi 100.0 2.6E-39 5.6E-44 278.1 17.6 184 28-240 1-210 (212)
3 TIGR03614 RutB pyrimidine util 100.0 1.7E-37 3.7E-42 269.8 16.2 189 16-240 3-218 (226)
4 cd01011 nicotinamidase Nicotin 100.0 3.3E-37 7.1E-42 262.5 16.2 170 30-232 2-196 (196)
5 cd01015 CSHase N-carbamoylsarc 100.0 4E-37 8.6E-42 258.0 15.3 172 31-239 1-179 (179)
6 PTZ00331 alpha/beta hydrolase; 100.0 1.1E-36 2.3E-41 262.6 17.0 179 21-239 5-211 (212)
7 cd01013 isochorismatase Isocho 100.0 1.7E-36 3.7E-41 259.5 17.1 179 19-235 20-203 (203)
8 PRK11440 putative hydrolase; P 100.0 1.6E-36 3.4E-41 256.2 15.9 176 24-239 4-186 (188)
9 PF00857 Isochorismatase: Isoc 100.0 1.7E-36 3.7E-41 251.1 12.7 169 30-236 1-174 (174)
10 PLN02621 nicotinamidase 100.0 1.4E-35 3E-40 252.7 15.1 172 23-239 15-192 (197)
11 COG1335 PncA Amidases related 100.0 8.2E-35 1.8E-39 247.8 14.4 157 28-200 4-176 (205)
12 cd00431 cysteine_hydrolases Cy 100.0 2.9E-33 6.3E-38 229.2 15.4 150 31-200 1-153 (161)
13 cd01014 nicotinamidase_related 100.0 1E-32 2.2E-37 226.4 15.4 143 31-201 1-143 (155)
14 cd01012 YcaC_related YcaC rela 100.0 7.9E-33 1.7E-37 227.5 11.7 151 31-238 1-152 (157)
15 COG1535 EntB Isochorismate hyd 100.0 1.4E-29 3E-34 209.4 12.1 188 12-239 14-208 (218)
16 KOG4003 Pyrazinamidase/nicotin 99.9 1.1E-25 2.4E-30 186.0 10.1 175 30-226 2-212 (223)
17 KOG4044 Mitochondrial associat 99.7 3.4E-17 7.4E-22 134.2 11.4 149 23-222 10-159 (201)
18 PF02739 5_3_exonuc_N: 5'-3' e 56.4 11 0.00023 31.3 2.8 43 139-189 90-132 (169)
19 TIGR01415 trpB_rel pyridoxal-p 54.7 35 0.00076 32.6 6.3 66 141-235 109-174 (419)
20 PRK04346 tryptophan synthase s 50.7 35 0.00075 32.4 5.5 62 145-235 102-163 (397)
21 PLN02618 tryptophan synthase, 48.9 36 0.00078 32.4 5.4 63 144-235 114-176 (410)
22 TIGR01274 ACC_deam 1-aminocycl 48.4 55 0.0012 29.9 6.4 69 143-235 60-129 (337)
23 cd06446 Trp-synth_B Tryptophan 48.1 59 0.0013 30.2 6.6 63 144-235 77-139 (365)
24 PRK12390 1-aminocyclopropane-1 47.6 66 0.0014 29.3 6.8 40 143-191 61-101 (337)
25 PRK13028 tryptophan synthase s 47.3 41 0.00088 32.0 5.5 63 144-235 105-167 (402)
26 PRK12391 tryptophan synthase s 46.8 50 0.0011 31.6 6.0 65 142-235 119-183 (427)
27 PRK14045 1-aminocyclopropane-1 44.0 59 0.0013 29.6 5.9 39 144-191 65-104 (329)
28 TIGR01275 ACC_deam_rel pyridox 43.6 59 0.0013 29.2 5.7 40 144-192 51-91 (311)
29 TIGR00263 trpB tryptophan synt 42.1 85 0.0018 29.4 6.7 63 144-235 93-155 (385)
30 PRK13803 bifunctional phosphor 40.4 51 0.0011 33.0 5.2 63 144-235 313-375 (610)
31 KOG1371 UDP-glucose 4-epimeras 39.3 41 0.00088 31.3 4.0 43 149-200 2-44 (343)
32 PRK13802 bifunctional indole-3 38.5 74 0.0016 32.5 6.0 64 143-235 373-436 (695)
33 COG1087 GalE UDP-glucose 4-epi 37.9 36 0.00077 31.4 3.3 41 151-200 2-42 (329)
34 cd06449 ACCD Aminocyclopropane 37.3 98 0.0021 27.7 6.2 42 144-194 47-89 (307)
35 PRK06381 threonine synthase; V 36.5 1.4E+02 0.0029 26.9 7.0 63 140-235 54-116 (319)
36 PRK03910 D-cysteine desulfhydr 34.6 1.1E+02 0.0024 27.7 6.2 42 144-194 59-101 (331)
37 cd00640 Trp-synth-beta_II Tryp 33.3 1.2E+02 0.0027 25.8 6.0 63 141-235 39-103 (244)
38 cd01563 Thr-synth_1 Threonine 32.4 1.7E+02 0.0037 26.3 6.9 63 140-235 61-123 (324)
39 PRK08329 threonine synthase; V 31.3 1.9E+02 0.0041 26.5 7.1 43 139-191 94-136 (347)
40 cd01561 CBS_like CBS_like: Thi 30.6 1.9E+02 0.0042 25.5 6.9 45 140-193 40-87 (291)
41 cd06167 LabA_like LabA_like pr 29.8 1E+02 0.0022 24.0 4.5 43 139-191 90-132 (149)
42 PRK07591 threonine synthase; V 27.6 2.2E+02 0.0047 27.0 7.0 64 139-235 127-190 (421)
43 PRK05973 replicative DNA helic 27.0 1.2E+02 0.0025 26.7 4.7 47 30-83 148-194 (237)
44 COG2089 SpsE Sialic acid synth 27.0 4.3E+02 0.0093 24.7 8.4 55 138-200 137-191 (347)
45 COG2179 Predicted hydrolase of 26.9 1.7E+02 0.0037 24.7 5.3 117 29-196 27-145 (175)
46 PRK10098 putative dehydrogenas 26.3 1.2E+02 0.0026 28.3 4.8 65 6-83 55-120 (350)
47 cd06448 L-Ser-dehyd Serine deh 26.3 2.2E+02 0.0049 25.7 6.6 58 144-234 43-103 (316)
48 PF04312 DUF460: Protein of un 26.2 1.1E+02 0.0024 24.8 4.0 52 23-83 36-87 (138)
49 cd00008 53EXOc 5'-3' exonuclea 26.0 74 0.0016 27.8 3.3 43 139-189 89-131 (240)
50 KOG1395 Tryptophan synthase be 25.5 1.3E+02 0.0029 28.5 4.9 69 139-236 159-229 (477)
51 COG2515 Acd 1-aminocyclopropan 25.2 1.1E+02 0.0023 28.3 4.2 39 147-193 62-100 (323)
52 PF13481 AAA_25: AAA domain; P 25.1 1.2E+02 0.0027 24.5 4.3 46 29-79 141-186 (193)
53 PF00291 PALP: Pyridoxal-phosp 25.0 88 0.0019 27.4 3.7 37 143-189 50-86 (306)
54 PRK08197 threonine synthase; V 24.8 3.4E+02 0.0074 25.3 7.7 63 139-234 117-179 (394)
55 smart00475 53EXOc 5'-3' exonuc 23.9 91 0.002 27.7 3.5 43 139-189 88-130 (259)
56 PRK06721 threonine synthase; R 23.8 2.3E+02 0.0049 26.1 6.2 41 142-192 68-108 (352)
57 PF00009 GTP_EFTU: Elongation 23.6 1.7E+02 0.0037 23.8 4.9 36 28-79 94-129 (188)
58 PF06833 MdcE: Malonate decarb 23.3 1.3E+02 0.0027 26.7 4.1 49 28-80 64-113 (234)
59 PLN00011 cysteine synthase 23.2 3.2E+02 0.007 24.7 7.1 36 149-194 69-104 (323)
60 PRK09482 flap endonuclease-lik 23.0 79 0.0017 28.2 2.9 43 139-189 88-130 (256)
61 cd00984 DnaB_C DnaB helicase C 21.2 2.6E+02 0.0056 23.5 5.7 48 29-79 123-170 (242)
62 PF00837 T4_deiodinase: Iodoth 21.2 1.4E+02 0.003 26.4 4.0 58 28-85 80-149 (237)
63 PRK06110 hypothetical protein; 20.5 2.9E+02 0.0062 25.0 6.2 34 150-192 70-103 (322)
64 cd05313 NAD_bind_2_Glu_DH NAD( 20.3 5E+02 0.011 23.1 7.4 50 139-198 24-77 (254)
65 PF04951 Peptidase_M55: D-amin 20.1 5.9E+02 0.013 22.8 7.9 31 54-84 32-62 (265)
No 1
>PLN02743 nicotinamidase
Probab=100.00 E-value=5.9e-50 Score=350.65 Aligned_cols=234 Identities=77% Similarity=1.307 Sum_probs=208.4
Q ss_pred cchhHHhhhhccCCCCccccccCCCCceEEEEEcccCccCCCCCCCCC----CchhHHHHHHHHHHHHHHhhCCCcEEEE
Q 026098 3 MTSKTIDLLRNELPVEQESLFLSGDVKTGLVLVDVVNGFCTVGSGNLP----DGQISEMVDESVRLARVFCEKKWPVFAF 78 (243)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ALlvID~QndF~~~~~g~l~----~~~~~~iv~~i~~li~~~r~~g~pVv~~ 78 (243)
|+|.|+++|+.++|+.+.++.+..++++|||||||||+|+.++.|.++ ...++.+++++++|++.||++|+||||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tALlVIDmQndF~~~~~g~l~~~~~~~~~~~iv~~i~~Ll~~aR~~g~pVI~~ 80 (239)
T PLN02743 1 MVSDTVDLLKKELPVEQESLVLNGDVRTGLVLVDEVNGFCTVGAGNLAPREPDKQISKMVDESARLAREFCERKWPVLAF 80 (239)
T ss_pred ChHHHHHHHHHhCCCccccccccCCCCEEEEEEeCcCCccCCCccccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 689999999999999888877777789999999999999986434553 2456789999999999999999999999
Q ss_pred EecCCCCCCCCCCCCCccCCCCCCcccccccccccCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeee
Q 026098 79 LDTHYPDVPEPPYPPHCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGIC 158 (243)
Q Consensus 79 ~d~h~~~~~~~~~p~~~~~gt~g~~i~~~l~~~~~~~~~~v~~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lvi~Gv~ 158 (243)
+++|.++..+..||.||+.||+|++++++|.|.+++....+++|+++|+|++|+.+.+++.|..+|+++||++|+|+|++
T Consensus 81 ~d~h~~~~~~~~~~~h~v~Gt~g~ei~~~L~p~~~~~~v~v~~K~~~saF~~t~~~~~t~~L~~~Lr~~gI~~liv~Gv~ 160 (239)
T PLN02743 81 LDSHHPDKPEHPYPPHCIVGTGEENLVPALQWLENDPNVTLRRKDCIDGFVGAIEKDGSNVFVDWVNNNKIKVILVVGIC 160 (239)
T ss_pred eCccCCCccccCCCCccCCCCcccccchhhCCCCCCceEEEEecCccccccccccccCccHHHHHHHHCCCCEEEEEEeC
Confidence 99998776666799999999999999999998765533346789999999997555444448999999999999999999
Q ss_pred cCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHHHHHHhhcCCcEEeecee
Q 026098 159 TDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVS 236 (243)
Q Consensus 159 Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~ga~V~~~~e 236 (243)
|++||+||++|+++|+++||++|+++|+|++|||++++.+.|.++.++.++.|+++.||..++++|+.+||+|++..-
T Consensus 161 T~~CV~~~~sTardA~~~Gy~~~~~~V~Vv~DA~at~d~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 238 (239)
T PLN02743 161 TDICVLDFVASALSARNHGILPPLEDVVVYSRGCATYDLPLHVAKTIKGALAHPQELMHHMGLYMAKGRGAKVVSKVS 238 (239)
T ss_pred cchhccChHHHHHHHHHcCCCCCCceEEEeCCccccCChhhhhhhhhccccCCCHHHHHHHHHHHHHhCCcEeeeeec
Confidence 999999778999999999998888899999999999999999999999999999999999999999999999998754
No 2
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=100.00 E-value=2.6e-39 Score=278.06 Aligned_cols=184 Identities=23% Similarity=0.403 Sum_probs=156.2
Q ss_pred CceEEEEEcccCccCCCCCCCCCCchhHHHHHHHHHHHHHHhhCCCcEEEEEecCCCCCCC-------------------
Q 026098 28 VKTGLVLVDVVNGFCTVGSGNLPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPE------------------- 88 (243)
Q Consensus 28 ~~~ALlvID~QndF~~~~~g~l~~~~~~~iv~~i~~li~~~r~~g~pVv~~~d~h~~~~~~------------------- 88 (243)
|++|||||||||+|+.+ |.++.++.++++++|++|++.||+.|+||||++++|.+++.+
T Consensus 1 m~~ALlvID~Qndf~~~--g~l~~~~~~~~v~~i~~l~~~ar~~g~pVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (212)
T PRK11609 1 MKRALLLVDLQNDFCAG--GALAVPEGDSTIDVANRLIDWCQSRGIPVIASQDWHPANHGSFASNHGAEPGTQGELDGLP 78 (212)
T ss_pred CCcEEEEEeCCccCCCC--CccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCcchhhcCCCCCccccccCCcc
Confidence 58999999999999953 677778889999999999999999999999999999765421
Q ss_pred -CCCCCCccCCCCCCcccccccccccCcceEEEecC------CcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCc
Q 026098 89 -PPYPPHCISGTDESNLVPELQWLENETNVTLRRKD------CIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDV 161 (243)
Q Consensus 89 -~~~p~~~~~gt~g~~i~~~l~~~~~~~~~~v~~K~------~~saF~~t~~~~~~~~L~~~L~~~gi~~lvi~Gv~Td~ 161 (243)
..||.||++||+|+++.++|.|.+.+ .++.|+ +||+|+++. ....++|+.+|+++||++|+|||++|++
T Consensus 79 ~~~~~~~~~~gt~g~el~~~l~~~~~d---~vi~K~~~~~~~~~SaF~~~~-~~~~T~L~~~L~~~gi~~lii~G~~T~~ 154 (212)
T PRK11609 79 QTWWPDHCVQNSEGAALHPLLNQKAID---AVFHKGENPLIDSYSAFFDNG-HRQKTALDDWLREHGITELIVMGLATDY 154 (212)
T ss_pred cccCcccccCCCCcCccChhhcccCCC---EEEECCCCCCCcccccccCCC-CCCCccHHHHHHHcCCCEEEEEEeccCH
Confidence 24899999999999999999887544 788996 799998410 0011499999999999999999999999
Q ss_pred ccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHHHHHHhhcCCcEEeeceecccC
Q 026098 162 CVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSFGAL 240 (243)
Q Consensus 162 CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~ga~V~~~~e~~~~ 240 (243)
||. +|+++|+++|| +|+|++|||++++...+ .|+.++..|...|++|++++|++..
T Consensus 155 CV~---~Ta~dA~~~gy-----~v~v~~Da~a~~~~~~~---------------~~~~al~~~~~~~~~v~t~~~~~~~ 210 (212)
T PRK11609 155 CVK---FTVLDALALGY-----QVNVITDGCRGVNLQPQ---------------DSAHAFMEMSAAGATLYTLADWEET 210 (212)
T ss_pred HHH---HHHHHHHHCCC-----EEEEEeeccCCCCCCch---------------hHHHHHHHHHHCCCEEEEHHHHHhh
Confidence 999 99999999999 99999999999874322 2355777888899999999998764
No 3
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=100.00 E-value=1.7e-37 Score=269.76 Aligned_cols=189 Identities=21% Similarity=0.247 Sum_probs=160.3
Q ss_pred CCCccccccCCCCceEEEEEcccCccCCCCCCCCC-----CchhHHHHHHHHHHHHHHhhCCCcEEEEEecCCCCCCC--
Q 026098 16 PVEQESLFLSGDVKTGLVLVDVVNGFCTVGSGNLP-----DGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPE-- 88 (243)
Q Consensus 16 ~~~~~~~~~~~~~~~ALlvID~QndF~~~~~g~l~-----~~~~~~iv~~i~~li~~~r~~g~pVv~~~d~h~~~~~~-- 88 (243)
|.....+.+++ +++|||||||||+|+.++ |.+. ..+...+++++++|++.||+.|+||||+++.|.+++.+
T Consensus 3 ~~~~~~~~~~~-~~tALlvID~Qn~f~~~~-~~~~~~~~~~~~~~~~i~~i~~l~~~aR~~g~pVI~~~~~~~~~~~~~~ 80 (226)
T TIGR03614 3 PARPEPITLDP-EQTALIVVDMQNAYATPG-GYLDLAGFDVSGTKPVIENIKKAVTAARAAGIQVIYFQNGWDNDYVEAG 80 (226)
T ss_pred CCCCcccccCC-CCEEEEEEechhhhhCCC-cccccccCcchhHHHHHHHHHHHHHHHHHcCCEEEEEecccChhhhhcc
Confidence 44456677888 599999999999999864 5552 35678899999999999999999999999887654211
Q ss_pred ----C----------------CCCCCccCCCCCCcccccccccccCcceEEEecCCcccccccccCCCcchHHHHHHhCC
Q 026098 89 ----P----------------PYPPHCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQ 148 (243)
Q Consensus 89 ----~----------------~~p~~~~~gt~g~~i~~~l~~~~~~~~~~v~~K~~~saF~~t~~~~~~~~L~~~L~~~g 148 (243)
. .++.+|..|++|++++++|.|.+++ .+++|+++|+|++| +|+.+|+++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~p~~~d---~vi~K~~~saF~~T-------~L~~~Lr~~g 150 (226)
T TIGR03614 81 GPGSPNWHKSNALKTMRKRPELQGKLLAKGTWDYELVDELQPQPGD---IVLPKPRYSGFFNT-------PLDSMLRARG 150 (226)
T ss_pred CCCcccccccccccccccCcccccceeecCCCCcccCcccCCCCCC---EEEeCCCcCCCCCC-------CHHHHHHHCC
Confidence 0 0124678899999999999987654 89999999999997 9999999999
Q ss_pred CCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHHHHHHhhcCC
Q 026098 149 IKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRG 228 (243)
Q Consensus 149 i~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~g 228 (243)
|++|||+|++||+||. +|+++|+++|| +|+|++|||++.+.+ .+|++.+..+...+
T Consensus 151 I~~lvi~Gv~T~~CV~---sTar~A~~~Gy-----~v~vv~Da~a~~~~~----------------~~h~~~l~~l~~~~ 206 (226)
T TIGR03614 151 IRNLVFTGIATNVCVE---STLRDGFHLEY-----FGVVLEDATHQAGPD----------------FMQKAALYNIETFF 206 (226)
T ss_pred CCEEEEeccCccHhHH---HHHHHHHHCCC-----EEEEechhccCCCch----------------HHHHHHHHHHHhHh
Confidence 9999999999999999 99999999999 999999999987643 24677898999999
Q ss_pred cEEeeceecccC
Q 026098 229 AKVVSGVSFGAL 240 (243)
Q Consensus 229 a~V~~~~e~~~~ 240 (243)
+.|.++.|+++.
T Consensus 207 ~~v~~~~~~~~~ 218 (226)
T TIGR03614 207 GWVSDVADFCGT 218 (226)
T ss_pred eeeecHHHHHHH
Confidence 999999997653
No 4
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=100.00 E-value=3.3e-37 Score=262.53 Aligned_cols=170 Identities=28% Similarity=0.396 Sum_probs=146.3
Q ss_pred eEEEEEcccCccCCCCCCCCCCchhHHHHHHHHHHHHHHhhCCCcEEEEEecCCCCCC-------------------CCC
Q 026098 30 TGLVLVDVVNGFCTVGSGNLPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVP-------------------EPP 90 (243)
Q Consensus 30 ~ALlvID~QndF~~~~~g~l~~~~~~~iv~~i~~li~~~r~~g~pVv~~~d~h~~~~~-------------------~~~ 90 (243)
+|||||||||||+.+ |.++.++.+.++++|+++++.+| |.||||++++|.++.. ...
T Consensus 2 tALlvID~Qndf~~~--g~l~~~~~~~~v~~i~~l~~~ar--g~~Vi~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (196)
T cd01011 2 DALLVVDVQNDFCPG--GALAVPGGDAIVPLINALLSLFQ--YDLVVATQDWHPANHASFASNHPGQMPFITLPPGPQVL 77 (196)
T ss_pred ceEEEEcCCCCCCCC--CcccCCCHHHHHHHHHHHHHhcC--CCEEEEecCCCCCCCcChhhcCCCCCCccccCCCCcCc
Confidence 699999999999975 68888889999999999999999 9999999999976432 125
Q ss_pred CCCCccCCCCCCcccccccccccCcceEEEecC------CcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccc
Q 026098 91 YPPHCISGTDESNLVPELQWLENETNVTLRRKD------CIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVL 164 (243)
Q Consensus 91 ~p~~~~~gt~g~~i~~~l~~~~~~~~~~v~~K~------~~saF~~t~~~~~~~~L~~~L~~~gi~~lvi~Gv~Td~CV~ 164 (243)
||.||++||+|++++++|.+.+. +.++.|+ +||+|++. ...++++|.++|+++||++|+|||++|++||.
T Consensus 78 ~~~~~~~gs~g~~i~~~l~~~~~---d~vi~K~~~~~~~~~saF~~~-~~~~~t~L~~~L~~~~i~~lii~G~~t~~CV~ 153 (196)
T cd01011 78 WPDHCVQGTPGAELHPGLPVPDI---DLIVRKGTNPDIDSYSAFFDN-DRRSSTGLAEYLRERGIDRVDVVGLATDYCVK 153 (196)
T ss_pred CCCccCCCCCCCccCcccccCCC---CEEEECCCCCCCceeeeeecC-CccCchhHHHHHHHCCCCEEEEEEecccHHHH
Confidence 99999999999999999987654 4788994 67999881 00112399999999999999999999999999
Q ss_pred cchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHHHHHHhhcCCcEEe
Q 026098 165 DFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVV 232 (243)
Q Consensus 165 ~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~ga~V~ 232 (243)
+|+++|+++|| +|+|++|||++++.+.| +.++..|+..|++|+
T Consensus 154 ---~T~~~a~~~g~-----~v~v~~Da~~~~~~~~~-----------------~~al~~~~~~G~~i~ 196 (196)
T cd01011 154 ---ATALDALKAGF-----EVRVLEDACRAVDPETI-----------------ERAIEEMKEAGVVLV 196 (196)
T ss_pred ---HHHHHHHHCCC-----EEEEeccccCCCCHHHH-----------------HHHHHHHHHccCEEC
Confidence 99999999999 99999999999998755 556778888888875
No 5
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=100.00 E-value=4e-37 Score=258.05 Aligned_cols=172 Identities=22% Similarity=0.292 Sum_probs=151.2
Q ss_pred EEEEEcccCccCCCCCCCCCCchhHHHHHHHHHHHHHHhhCCCcEEEEEecCCCCCCC-CC----CC--CCccCCCCCCc
Q 026098 31 GLVLVDVVNGFCTVGSGNLPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPE-PP----YP--PHCISGTDESN 103 (243)
Q Consensus 31 ALlvID~QndF~~~~~g~l~~~~~~~iv~~i~~li~~~r~~g~pVv~~~d~h~~~~~~-~~----~p--~~~~~gt~g~~ 103 (243)
|||||||||+|+.+ |.+..++.+.++++++++++.+|++|+||||++++|.++.++ .. || .++..|++|++
T Consensus 1 ALlvID~Q~~f~~~--~~~~~~~~~~~~~ni~~l~~~ar~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~ 78 (179)
T cd01015 1 ALLVIDLVEGYTQP--GSYLAPGIAAALENVQRLLAAARAAGVPVIHTTVVYDPDGADGGLWARKVPAMSDLVEGSPLAA 78 (179)
T ss_pred CEEEEEeecceeCC--CCccccchHHHHHHHHHHHHHHHHcCCCEEEEEeeECCccCccchhhhcccccccccCCCCccc
Confidence 69999999999975 456666788999999999999999999999999887655433 22 33 34778999999
Q ss_pred ccccccccccCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCC
Q 026098 104 LVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLE 183 (243)
Q Consensus 104 i~~~l~~~~~~~~~~v~~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~ 183 (243)
+.++|.|.+++ .+++|.++|+|++| +|+.+|+++||++|+|+|++||+||+ +|+++|+++||
T Consensus 79 ~~~~l~~~~~~---~v~~K~~~saF~~t-------~L~~~L~~~gi~~vvi~G~~t~~CV~---~Ta~~A~~~Gy----- 140 (179)
T cd01015 79 ICDELAPQEDE---MVLVKKYASAFFGT-------SLAATLTARGVDTLIVAGCSTSGCIR---ATAVDAMQHGF----- 140 (179)
T ss_pred cccccCCCCCC---EEEecCccCCccCC-------cHHHHHHHcCCCEEEEeeecccHhHH---HHHHHHHHCCC-----
Confidence 99999987654 89999999999996 99999999999999999999999999 99999999999
Q ss_pred cEEEecCCcccCCcchhhhhhccccCCCchHHHHHHHHHHhhcCCcEEeeceeccc
Q 026098 184 DVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSFGA 239 (243)
Q Consensus 184 ~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~ga~V~~~~e~~~ 239 (243)
+|+|++|||++++.+.| ++++..+...++.|+++.|+++
T Consensus 141 ~v~vv~Da~a~~~~~~h-----------------~~al~~l~~~~~~v~~t~~~~~ 179 (179)
T cd01015 141 RPIVVRECVGDRAPAPH-----------------EANLFDIDNKYGDVVSTDDALA 179 (179)
T ss_pred eEEEeeccccCCCHHHH-----------------HHHHHHHHhhceeeccHHHHhC
Confidence 99999999999887655 6678899999999999999864
No 6
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=100.00 E-value=1.1e-36 Score=262.58 Aligned_cols=179 Identities=24% Similarity=0.346 Sum_probs=156.0
Q ss_pred ccccCCCCceEEEEEcccCccCCCCCCCCCCchhHHHHHHHHHHHHHHhhCCCcEEEEEecCCCCCCC------------
Q 026098 21 SLFLSGDVKTGLVLVDVVNGFCTVGSGNLPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPE------------ 88 (243)
Q Consensus 21 ~~~~~~~~~~ALlvID~QndF~~~~~g~l~~~~~~~iv~~i~~li~~~r~~g~pVv~~~d~h~~~~~~------------ 88 (243)
++-+++ +++|||||||||||+.+ |.++.++.++++++++++++++ .+.+|+|++++|++++..
T Consensus 5 ~~~~~~-~~~ALlVIDmQndF~~~--g~l~~~~~~~iv~~i~~l~~~~--~~~~Vi~~~d~h~~~~~~~~~~~~~~~~~~ 79 (212)
T PTZ00331 5 CITVSS-TNDALIIVDVQNDFCKG--GSLAVPDAEEVIPVINQVRQSH--HFDLVVATQDWHPPNHISFASNHGKPKILP 79 (212)
T ss_pred ccccCC-CCCEEEEEcCCCCCCCC--CccCCCCHHHHHHHHHHHHHhc--CCCEEEEecCcCCCCCcChhhcCCCCCccc
Confidence 345666 69999999999999975 6888888999999999999943 355799999999765431
Q ss_pred -----CCCCCCccCCCCCCcccccccccccCcceEEEecC------Ccccc-----cccccCCCcchHHHHHHhCCCCEE
Q 026098 89 -----PPYPPHCISGTDESNLVPELQWLENETNVTLRRKD------CIDGF-----LGSVEKDGSNVFVNWVKSNQIKNV 152 (243)
Q Consensus 89 -----~~~p~~~~~gt~g~~i~~~l~~~~~~~~~~v~~K~------~~saF-----~~t~~~~~~~~L~~~L~~~gi~~l 152 (243)
..||.||++||+|++|+++|.|.+. +.++.|+ +||+| ++| +|..+|+++||++|
T Consensus 80 ~~~~~~~~~~h~~~gs~g~~i~~~L~~~~~---~~vi~K~~~~~~~~~saF~~~~~~~t-------~L~~~L~~~gi~~l 149 (212)
T PTZ00331 80 DGTTQGLWPPHCVQGTKGAQLHKDLVVERI---DIIIRKGTNRDVDSYSAFDNDKGSKT-------GLAQILKAHGVRRV 149 (212)
T ss_pred CCCccCCCcccccCCCCcccCChhhccCCC---cEEEECCCCCCCceecCccCCCCCCc-------hHHHHHHHCCCCEE
Confidence 2699999999999999999988754 3788997 68999 775 99999999999999
Q ss_pred EEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHHHHHHhhcCCcEEe
Q 026098 153 LVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVV 232 (243)
Q Consensus 153 vi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~ga~V~ 232 (243)
+|||++||+||. +|+++|.++|| +|+|++|||++++.+.| +.++..|+..|++|+
T Consensus 150 vi~G~~t~~CV~---~Ta~~a~~~g~-----~v~vv~Da~~~~~~~~~-----------------~~al~~~~~~g~~v~ 204 (212)
T PTZ00331 150 FICGLAFDFCVL---FTALDAVKLGF-----KVVVLEDATRAVDPDAI-----------------SKQRAELLEAGVILL 204 (212)
T ss_pred EEEEeccCHHHH---HHHHHHHHCCC-----EEEEeCcCccCCCHHHH-----------------HHHHHHHHHCCCEEE
Confidence 999999999999 99999999999 99999999999988765 557889999999999
Q ss_pred eceeccc
Q 026098 233 SGVSFGA 239 (243)
Q Consensus 233 ~~~e~~~ 239 (243)
+++|+++
T Consensus 205 ~~~~~~~ 211 (212)
T PTZ00331 205 TSSDLVA 211 (212)
T ss_pred eHHHhhh
Confidence 9988864
No 7
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=100.00 E-value=1.7e-36 Score=259.48 Aligned_cols=179 Identities=17% Similarity=0.204 Sum_probs=152.8
Q ss_pred ccccccCCCCceEEEEEcccCccCCCCCCCCCCchhHHHHHHHHHHHHHHhhCCCcEEEEEecCCCCCCC-----CCCCC
Q 026098 19 QESLFLSGDVKTGLVLVDVVNGFCTVGSGNLPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPE-----PPYPP 93 (243)
Q Consensus 19 ~~~~~~~~~~~~ALlvID~QndF~~~~~g~l~~~~~~~iv~~i~~li~~~r~~g~pVv~~~d~h~~~~~~-----~~~p~ 93 (243)
..++.+++ +++|||||||||+|+.+. .....+.+.+++++++|++.||+.|+||||+++.|...... ..|+.
T Consensus 20 ~~~~~l~~-~~tALlvID~Q~~f~~~~--~~~~~~~~~~~~~i~~li~~ar~~g~pVi~t~~~~~~~~~~~~~~~~~~~~ 96 (203)
T cd01013 20 KVDWQIDP-KRAVLLVHDMQRYFLDFY--DESAEPVPQLIANIARLRDWCRQAGIPVVYTAQPGNQTPEQRALLNDFWGP 96 (203)
T ss_pred CCCCCCCC-CcEEEEEEeChhhhhCcc--ccccchHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCChhHHHHHHHHhhc
Confidence 44567777 599999999999999742 12345678899999999999999999999999655422111 25777
Q ss_pred CccCCCCCCcccccccccccCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccccchhhHHHH
Q 026098 94 HCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSA 173 (243)
Q Consensus 94 ~~~~gt~g~~i~~~l~~~~~~~~~~v~~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A 173 (243)
++..|++|++++++|.|.+++ .+++|.++|+|++| +|+.+|+++||++|+|+|++|++||+ +||++|
T Consensus 97 ~~~~~~~~~~~~~~l~~~~~d---~vi~K~~~saF~~T-------~L~~~Lr~~gi~~lii~Gv~T~~CV~---~Ta~~A 163 (203)
T cd01013 97 GLTASPEETKIVTELAPQPDD---TVLTKWRYSAFKRS-------PLLERLKESGRDQLIITGVYAHIGCL---STAVDA 163 (203)
T ss_pred cCCCCCCccccccccCCCCCC---EEEeCCCcCCcCCC-------CHHHHHHHcCCCEEEEEEeccChhHH---HHHHHH
Confidence 777789999999999987654 89999999999997 99999999999999999999999999 999999
Q ss_pred HHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHHHHHHhhcCCcEEeece
Q 026098 174 RNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGV 235 (243)
Q Consensus 174 ~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~ga~V~~~~ 235 (243)
+++|| +|+|++|||++++.+.| +++|..|..++++|++++
T Consensus 164 ~~~Gy-----~v~vv~Da~as~~~~~h-----------------~~al~~l~~~~a~v~~t~ 203 (203)
T cd01013 164 FMRDI-----QPFVVADAIADFSLEEH-----------------RMALKYAATRCAMVVSTD 203 (203)
T ss_pred HHCCC-----eEEEeccccCCCCHHHH-----------------HHHHHHHHhheeEeeecC
Confidence 99999 99999999999987755 667888999999999863
No 8
>PRK11440 putative hydrolase; Provisional
Probab=100.00 E-value=1.6e-36 Score=256.25 Aligned_cols=176 Identities=21% Similarity=0.253 Sum_probs=149.8
Q ss_pred cCCCCceEEEEEcccCccCCCCCCCCCCchhHHHHHHHHHHHHHHhhCCCcEEEEEecCCCCCCC-------CCCCCCcc
Q 026098 24 LSGDVKTGLVLVDVVNGFCTVGSGNLPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPE-------PPYPPHCI 96 (243)
Q Consensus 24 ~~~~~~~ALlvID~QndF~~~~~g~l~~~~~~~iv~~i~~li~~~r~~g~pVv~~~d~h~~~~~~-------~~~p~~~~ 96 (243)
+++ .++|||||||||+|+... |. ..+.+.+++++++|++.||+.|+||||+++.|.++.++ ...+.+|.
T Consensus 4 l~~-~~~ALlvID~Qn~f~~~~-~~--~~~~~~~i~~i~~l~~~ar~~g~pVi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (188)
T PRK11440 4 LNA-KTTALVVIDLQEGILPFA-GG--PHTADEVVARAARLAAKFRASGSPVVLVRVGWSADYAEALKQPVDAPSPAKVL 79 (188)
T ss_pred CCC-CCEEEEEEecccccccCC-CC--cchHHHHHHHHHHHHHHHHHcCCcEEEEecccCCchhhhccCccccccccccc
Confidence 455 589999999999999642 22 23567899999999999999999999999877655432 12356777
Q ss_pred CCCCCCcccccccccccCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHC
Q 026098 97 SGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNR 176 (243)
Q Consensus 97 ~gt~g~~i~~~l~~~~~~~~~~v~~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~ 176 (243)
.+++ +++.++|.|.+++ .++.|+++|+|++| +|+.+|+++||++|+|||++|++||. +|+++|+++
T Consensus 80 ~~~~-~~~~~~l~~~~~d---~vi~K~~~saF~~T-------~L~~~L~~~gi~~lii~Gv~T~~CV~---~Ta~~A~~~ 145 (188)
T PRK11440 80 PENW-WQHPAALGKTDSD---IEVTKRQWGAFYGT-------DLELQLRRRGIDTIVLCGISTNIGVE---STARNAWEL 145 (188)
T ss_pred CCcc-cccCcccCCCCCC---EEEecCCcCCCCCC-------CHHHHHHHCCCCEEEEeeechhHHHH---HHHHHHHHC
Confidence 7776 7999999988654 78999999999997 99999999999999999999999999 999999999
Q ss_pred CCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHHHHHHhhcCCcEEeeceeccc
Q 026098 177 GFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSFGA 239 (243)
Q Consensus 177 Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~ga~V~~~~e~~~ 239 (243)
|| +|+|++|||++++.+.| +.++..+..++++|.++.|+++
T Consensus 146 gy-----~v~vv~Da~as~~~~~h-----------------~~al~~~~~~~a~v~~~~~~~~ 186 (188)
T PRK11440 146 GF-----NLVIAEDACSAASAEQH-----------------QNSMNHIFPRIARVRSVEEILN 186 (188)
T ss_pred CC-----EEEEechhhcCCCHHHH-----------------HHHHHHHHhheeEEeeHHHHHh
Confidence 99 99999999999987755 5567777778999999998764
No 9
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=100.00 E-value=1.7e-36 Score=251.12 Aligned_cols=169 Identities=31% Similarity=0.528 Sum_probs=149.3
Q ss_pred eEEEEEcccCccCCCCCCCCCCchhHHHHHHHHHHHHHHhhCCCcEEEEEecCCCCCCC-----CCCCCCccCCCCCCcc
Q 026098 30 TGLVLVDVVNGFCTVGSGNLPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPE-----PPYPPHCISGTDESNL 104 (243)
Q Consensus 30 ~ALlvID~QndF~~~~~g~l~~~~~~~iv~~i~~li~~~r~~g~pVv~~~d~h~~~~~~-----~~~p~~~~~gt~g~~i 104 (243)
||||||||||+|+. +.+..++.+.+++++++|++++|+.|.||||+++.|...... ..|+.+|..|++|+++
T Consensus 1 TaLlvID~Q~~f~~---~~~~~~~~~~~i~~i~~l~~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l 77 (174)
T PF00857_consen 1 TALLVIDMQNDFIN---GSLAPPNAEAIIPNINRLLDAARAAGVPVIHTRDIHDSPHWSGPFEPKPWPPHCIPGSPGAEL 77 (174)
T ss_dssp EEEEEES-BHHHHT---STTTSTTHHHHHHHHHHHHHHHHHTTEEEEEEEESBSTTTTTTSGGHSCHTSCSBTTSGGGSB
T ss_pred CEEEEEeChhhhhc---CCccccCHHHHHHHHHHHHHHHHHhCCCeEEEEeeecccccccccccccccccccCCCCccce
Confidence 69999999999993 467778899999999999999999999999999888722221 3467899999999999
Q ss_pred cccccccccCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCc
Q 026098 105 VPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLED 184 (243)
Q Consensus 105 ~~~l~~~~~~~~~~v~~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ 184 (243)
.+++.|.+++ .++.|+++|+|+++ +|..+|+++|+++|+|+|++|++||. +|+++|+++|| +
T Consensus 78 ~~~l~~~~~~---~vi~K~~~saf~~t-------~L~~~L~~~gi~~vil~G~~t~~CV~---~Ta~~a~~~g~-----~ 139 (174)
T PF00857_consen 78 VPELAPQPGD---PVIEKNRYSAFFGT-------DLDEILRKRGIDTVILCGVATDVCVL---ATARDAFDRGY-----R 139 (174)
T ss_dssp HGGGHCHTTS---EEEEESSSSTTTTS-------SHHHHHHHTTESEEEEEEESTTTHHH---HHHHHHHHTT------E
T ss_pred eeEeeccccc---ceEEeecccccccc-------cccccccccccceEEEcccccCcEEe---hhHHHHHHCCC-----E
Confidence 9999998754 89999999999996 99999999999999999999999999 99999999999 9
Q ss_pred EEEecCCcccCCcchhhhhhccccCCCchHHHHHHHHHHhhcCCcEEeecee
Q 026098 185 VIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVS 236 (243)
Q Consensus 185 v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~ga~V~~~~e 236 (243)
|+|++|||++++.+.| ++++..|+..|++|+++.|
T Consensus 140 v~v~~Da~~~~~~~~h-----------------~~~l~~l~~~~~~v~t~~~ 174 (174)
T PF00857_consen 140 VIVVEDACASYSPEAH-----------------EAALEELRKRGAEVITSAE 174 (174)
T ss_dssp EEEEEEEEEBSSHHHH-----------------HHHHHHHHHHTSEEE-HHH
T ss_pred EEEEChhhcCCCHHHH-----------------HHHHHHHHhCCCEEEeCCC
Confidence 9999999999997755 6788999999999999865
No 10
>PLN02621 nicotinamidase
Probab=100.00 E-value=1.4e-35 Score=252.68 Aligned_cols=172 Identities=20% Similarity=0.230 Sum_probs=149.5
Q ss_pred ccCCCCceEEEEEcccCccCCCCCCCCCCchhHHHHHHHHHHHHHHhhCCCcEEEEEecCCCCCC----CCCCCCC-ccC
Q 026098 23 FLSGDVKTGLVLVDVVNGFCTVGSGNLPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVP----EPPYPPH-CIS 97 (243)
Q Consensus 23 ~~~~~~~~ALlvID~QndF~~~~~g~l~~~~~~~iv~~i~~li~~~r~~g~pVv~~~d~h~~~~~----~~~~p~~-~~~ 97 (243)
.+.+ +++|||+|||||+|.. ....+++++++|++.+|+.|+||||++++|.+... ...||.+ |.+
T Consensus 15 ~~~~-~~~aLlvID~Q~~f~~---------~~~~~v~~i~~Ll~~ar~~~~pVi~t~~~~~~~~~~~~~~~~~~~~~~~~ 84 (197)
T PLN02621 15 DPDP-KQAALLVIDMQNYFSS---------MAEPILPALLTTIDLCRRASIPVFFTRHSHKSPSDYGMLGEWWDGDLILD 84 (197)
T ss_pred CCCC-CCEEEEEEeChhhhhh---------hHHHHHHHHHHHHHHHHHCCCcEEEEeccCCCcchhhhhhhhcCCccccC
Confidence 4555 5999999999999974 13678999999999999999999999988854321 1246655 899
Q ss_pred CCCCCcccccccc-cccCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHC
Q 026098 98 GTDESNLVPELQW-LENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNR 176 (243)
Q Consensus 98 gt~g~~i~~~l~~-~~~~~~~~v~~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~ 176 (243)
|++|+++.++|.| .++ +.++.|+++|+|++| +|+.+|+++|+++|+|+|++||+||+ +|+++|+++
T Consensus 85 gs~g~~i~~~L~~~~~~---~~vi~K~~~saf~~t-------~L~~~L~~~gi~~lvi~Gv~T~~CV~---~Ta~~a~~~ 151 (197)
T PLN02621 85 GTTEAELMPEIGRVTGP---DEVVEKSTYSAFYNT-------RLEERLRKIGVKEVIVTGVMTNLCCE---TTAREAFVR 151 (197)
T ss_pred CCCccccchhccCCCCC---CEEEECCCcCCCCCC-------cHHHHHHHCCCCEEEEEecccchhHH---HHHHHHHHC
Confidence 9999999999988 443 378999999999996 99999999999999999999999999 999999999
Q ss_pred CCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHHHHHHhhcCCcEEeeceeccc
Q 026098 177 GFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSFGA 239 (243)
Q Consensus 177 Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~ga~V~~~~e~~~ 239 (243)
|| +|+|++|||++++.+.| +.++..|+..|+.|+++.++++
T Consensus 152 gy-----~v~v~~Da~as~~~~~h-----------------~~al~~~~~~~~~v~~~~~~~~ 192 (197)
T PLN02621 152 GF-----RVFFSTDATATANEELH-----------------EATLKNLAYGFAYLVDCDRLEA 192 (197)
T ss_pred CC-----EEEEeccccCCCCHHHH-----------------HHHHHHHHhhceEeecHHHHHH
Confidence 99 99999999999987755 5678888889999999988764
No 11
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.2e-35 Score=247.83 Aligned_cols=157 Identities=27% Similarity=0.392 Sum_probs=134.3
Q ss_pred CceEEEEEcccCccCCCCCCCCCCchh--HHHHHHHHHHHHHHhhCCCcEEEEEecCCCCCCCC----------CCCCCc
Q 026098 28 VKTGLVLVDVVNGFCTVGSGNLPDGQI--SEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPEP----------PYPPHC 95 (243)
Q Consensus 28 ~~~ALlvID~QndF~~~~~g~l~~~~~--~~iv~~i~~li~~~r~~g~pVv~~~d~h~~~~~~~----------~~p~~~ 95 (243)
+++|||+|||||+|+.+. |.+...+. ..+++++++|++.+|+.|.||||++++|.++.... .||.||
T Consensus 4 ~~~ALivID~Q~~f~~~~-~~~~~~~~~~~~i~~~i~~l~~~ar~~~~~vi~t~~~~~~~~~~~~~~~~~~~~~~~~~h~ 82 (205)
T COG1335 4 AKTALIVVDMQNDFMPGG-GSLAALGVDGRKIIPNIAALVDAARAAGQPVIATQDWHPADISSLAGSPESSKLFPWPRHD 82 (205)
T ss_pred cceEEEEEeeeccccCCC-CcccccCCchhhhHHHHHHHHHHHHHcCCeEEEecccCCCcccccccccccccCCCCcchh
Confidence 699999999999999974 33322222 47999999999999999999999999999864321 188999
Q ss_pred cCCCCCCcccccccccccC---cceEEEecC-CcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccccchhhHH
Q 026098 96 ISGTDESNLVPELQWLENE---TNVTLRRKD-CIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTL 171 (243)
Q Consensus 96 ~~gt~g~~i~~~l~~~~~~---~~~~v~~K~-~~saF~~t~~~~~~~~L~~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~ 171 (243)
.+|++|++++++|.|.... ....++.|. +||+|++| +|+.+||++||++|++||++||+||+ +|++
T Consensus 83 ~~g~~g~~~~~~l~~~~~~~~~~~~~~~~k~~~~saF~~T-------~L~~~Lr~~~i~~l~v~G~~td~CV~---~T~~ 152 (205)
T COG1335 83 VKGTPGAELLGELPPAVDDAQLVPEDVIFKKHGYSAFAGT-------DLDDILRNLGIDTVVVCGIATDICVL---ATAR 152 (205)
T ss_pred cCCCcchhhccccccccccccccceeeeccccccCcccCC-------CHHHHHHHCCCCEEEEeeeehhHHHH---HHHH
Confidence 9999999999999986540 012566676 99999997 99999999999999999999999999 9999
Q ss_pred HHHHCCCCCCCCcEEEecCCcccCCcchh
Q 026098 172 SARNRGFLAPLEDVIVYSRGCATYDFPVH 200 (243)
Q Consensus 172 ~A~~~Gy~~~~~~v~V~~Da~as~~~~~h 200 (243)
+|+++|| +|+|++|||++++.+.+
T Consensus 153 ~A~~~gy-----~v~v~~da~~~~~~~~~ 176 (205)
T COG1335 153 DAFDLGY-----QVTLVEDATAGSSLDRS 176 (205)
T ss_pred HHHHCCC-----eEEEehhhcccCCCChH
Confidence 9999999 99999999999996543
No 12
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=100.00 E-value=2.9e-33 Score=229.24 Aligned_cols=150 Identities=35% Similarity=0.526 Sum_probs=134.4
Q ss_pred EEEEEcccCccCCCCCCCCCCchhHHHHHHHHHHHHHHhhCCCcEEEEEecCCCCCCC---CCCCCCccCCCCCCccccc
Q 026098 31 GLVLVDVVNGFCTVGSGNLPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPE---PPYPPHCISGTDESNLVPE 107 (243)
Q Consensus 31 ALlvID~QndF~~~~~g~l~~~~~~~iv~~i~~li~~~r~~g~pVv~~~d~h~~~~~~---~~~p~~~~~gt~g~~i~~~ 107 (243)
|||||||||+|+.+. ....++.+.++++++++++.+|+.|+||||+++.+.++.++ ..|+.+|..|++|+++.++
T Consensus 1 aLliID~Q~~f~~~~--~~~~~~~~~~~~~i~~l~~~ar~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 78 (161)
T cd00431 1 ALLVVDMQNDFVPGG--GLLLPGADELVPNINRLLAAARAAGIPVIFTRDWHPPDDPEFAELLWPPHCVKGTEGAELVPE 78 (161)
T ss_pred CEEEEECcccCcCCC--CCcCccHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCCCcccccccCcccccCCCchhhcchh
Confidence 699999999999853 22226688999999999999999999999999877665543 2588999999999999999
Q ss_pred ccccccCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEE
Q 026098 108 LQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIV 187 (243)
Q Consensus 108 l~~~~~~~~~~v~~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V 187 (243)
|.+.++ +.+++|+++|+|+++ +|.++|+++|+++|+|+|++|++||+ +|+++|+++|| +|+|
T Consensus 79 l~~~~~---~~~i~K~~~saf~~t-------~l~~~L~~~~i~~vil~G~~t~~CV~---~T~~~a~~~G~-----~v~v 140 (161)
T cd00431 79 LAPLPD---DLVIEKTRYSAFYGT-------DLDELLRERGIDTLVVCGIATDICVL---ATARDALDLGY-----RVIV 140 (161)
T ss_pred hCCCCC---CEEEecCCcCCccCC-------CHHHHHHHCCCCEEEEEecCcChhHH---HHHHHHHHCCC-----EEEE
Confidence 987654 379999999999996 99999999999999999999999999 99999999999 9999
Q ss_pred ecCCcccCCcchh
Q 026098 188 YSRGCATYDFPVH 200 (243)
Q Consensus 188 ~~Da~as~~~~~h 200 (243)
++|||++++.+.|
T Consensus 141 i~Da~~s~~~~~~ 153 (161)
T cd00431 141 VEDACATRDEEDH 153 (161)
T ss_pred ehhhcccCChHHH
Confidence 9999999999877
No 13
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=100.00 E-value=1e-32 Score=226.41 Aligned_cols=143 Identities=27% Similarity=0.450 Sum_probs=126.8
Q ss_pred EEEEEcccCccCCCCCCCCCCchhHHHHHHHHHHHHHHhhCCCcEEEEEecCCCCCCCCCCCCCccCCCCCCcccccccc
Q 026098 31 GLVLVDVVNGFCTVGSGNLPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPEPPYPPHCISGTDESNLVPELQW 110 (243)
Q Consensus 31 ALlvID~QndF~~~~~g~l~~~~~~~iv~~i~~li~~~r~~g~pVv~~~d~h~~~~~~~~~p~~~~~gt~g~~i~~~l~~ 110 (243)
|||||||||+|+.+. ....+..+++++++++++.+|++|+||||+++.|.++.+ +..||+|+++.++|.+
T Consensus 1 aLlviD~Q~~f~~~~---~~~~~~~~~v~~i~~li~~~r~~~~~Vi~~~~~~~~~~~-------~~~gt~g~~l~~~l~~ 70 (155)
T cd01014 1 ALLVIDVQNGYFDGG---LPPLNNEAALENIAALIAAARAAGIPVIHVRHIDDEGGS-------FAPGSEGWEIHPELAP 70 (155)
T ss_pred CEEEEeCchhhhCCC---CCcCCHHHHHHHHHHHHHHHHHCCCeEEEEEeccCCCCC-------CCCCCCccccchhhcC
Confidence 699999999999742 222368899999999999999999999999976654321 4679999999999987
Q ss_pred cccCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecC
Q 026098 111 LENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSR 190 (243)
Q Consensus 111 ~~~~~~~~v~~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~D 190 (243)
.+. +.+++|+++|+|++| +|.++|+++|+++|+|+|++||+||+ +|+++|+++|| +|+|++|
T Consensus 71 ~~~---d~v~~K~~~saf~~t-------~l~~~L~~~gi~~viv~G~~td~CV~---~Ta~~a~~~g~-----~v~vi~D 132 (155)
T cd01014 71 LEG---ETVIEKTVPNAFYGT-------DLEEWLREAGIDHLVICGAMTEMCVD---TTVRSAFDLGY-----DVTVVAD 132 (155)
T ss_pred CCC---CEEEeCCCCCCcCCC-------CHHHHHHHCCCCEEEEEeeccchhHH---HHHHHHHHCCC-----cEEEecc
Confidence 654 378999999999996 99999999999999999999999999 99999999999 9999999
Q ss_pred CcccCCcchhh
Q 026098 191 GCATYDFPVHV 201 (243)
Q Consensus 191 a~as~~~~~h~ 201 (243)
||++++.+.|.
T Consensus 133 a~~s~~~~~~~ 143 (155)
T cd01014 133 ACATFDLPDHG 143 (155)
T ss_pred cccCCCcccCC
Confidence 99999998884
No 14
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=100.00 E-value=7.9e-33 Score=227.55 Aligned_cols=151 Identities=25% Similarity=0.383 Sum_probs=132.2
Q ss_pred EEEEEcccCccCCCCCCCCCCchhHHHHHHHHHHHHHHhhCCCcEEEEEecCCCCCCCCCCCCCccCCCCCCcccccccc
Q 026098 31 GLVLVDVVNGFCTVGSGNLPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPEPPYPPHCISGTDESNLVPELQW 110 (243)
Q Consensus 31 ALlvID~QndF~~~~~g~l~~~~~~~iv~~i~~li~~~r~~g~pVv~~~d~h~~~~~~~~~p~~~~~gt~g~~i~~~l~~ 110 (243)
|||||||||+|+.. . .+.+.++++++++++.||++|+||||++ |.+. +..++.++|.|
T Consensus 1 aLlvID~Q~~f~~~---~---~~~~~~~~~i~~l~~~ar~~g~pVi~~~--~~~~--------------~~g~~~~~l~~ 58 (157)
T cd01012 1 ALLLVDVQEKLAPA---I---KSFDELINNTVKLAKAAKLLDVPVILTE--QYPK--------------GLGPTVPELRE 58 (157)
T ss_pred CEEEEeCcHHHHHh---h---cCHHHHHHHHHHHHHHHHhcCCCEEEEe--eCCC--------------CCCCchHHHHh
Confidence 69999999999862 1 2378899999999999999999999998 5321 12378899987
Q ss_pred -cccCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEec
Q 026098 111 -LENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYS 189 (243)
Q Consensus 111 -~~~~~~~~v~~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~ 189 (243)
.++ +.+++|+++|+|++| +|+.+|+++|+++|+|+|++||+||. +|+++|+++|| +|+|++
T Consensus 59 ~~~~---~~vi~K~~~saf~~t-------~L~~~L~~~gi~~lii~G~~T~~CV~---~Ta~~a~~~g~-----~v~v~~ 120 (157)
T cd01012 59 VFPD---APVIEKTSFSCWEDE-------AFRKALKATGRKQVVLAGLETHVCVL---QTALDLLEEGY-----EVFVVA 120 (157)
T ss_pred hCCC---CCceecccccCcCCH-------HHHHHHHhcCCCEEEEEEeeccHHHH---HHHHHHHHCCC-----EEEEEe
Confidence 554 378999999999996 99999999999999999999999999 99999999999 999999
Q ss_pred CCcccCCcchhhhhhccccCCCchHHHHHHHHHHhhcCCcEEeeceecc
Q 026098 190 RGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSFG 238 (243)
Q Consensus 190 Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~ga~V~~~~e~~ 238 (243)
|||++++.+.| +.++..|+..|++|+++.+++
T Consensus 121 Da~as~~~~~h-----------------~~al~~~~~~~~~v~~~~~~~ 152 (157)
T cd01012 121 DACGSRSKEDH-----------------ELALARMRQAGAVLTTSESVL 152 (157)
T ss_pred eCCCCCCHHHH-----------------HHHHHHHHHCCCEEeeHHHHH
Confidence 99999998755 668889999999999988765
No 15
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=1.4e-29 Score=209.35 Aligned_cols=188 Identities=16% Similarity=0.203 Sum_probs=162.6
Q ss_pred hccCCCCccccccCCCCceEEEEEcccCccCCCCCCCCCCchhHHHHHHHHHHHHHHhhCCCcEEEEEecCCCCCC-C--
Q 026098 12 RNELPVEQESLFLSGDVKTGLVLVDVVNGFCTVGSGNLPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVP-E-- 88 (243)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~ALlvID~QndF~~~~~g~l~~~~~~~iv~~i~~li~~~r~~g~pVv~~~d~h~~~~~-~-- 88 (243)
+.++|.+.-.|++++ .+.+|||+||||.|+.+- +. ..+..+.++.||.+|-..|.++|+||+||. |+.... +
T Consensus 14 ~~~~p~nk~~w~~~p-~RavLLIhDMQ~YFv~~~-~~-~~~~~~~li~Ni~~Lr~~~~~~giPVvyTa--qp~~qs~~dr 88 (218)
T COG1535 14 AHDLPQNKVDWRFEP-KRAVLLIHDMQNYFVSPW-GE-NCPLMEQLIANIAKLRIWCKQAGIPVVYTA--QPGEQSPEDR 88 (218)
T ss_pred cccCcccccccccCc-ccceeeeehhHHhhcCCC-CC-CCccHHHHHHHHHHHHHHHHHcCCcEEEEe--cCCcCCHHHH
Confidence 467887778899999 599999999999999863 22 234789999999999999999999999998 544322 1
Q ss_pred ----CCCCCCccCCCCCCcccccccccccCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccc
Q 026098 89 ----PPYPPHCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVL 164 (243)
Q Consensus 89 ----~~~p~~~~~gt~g~~i~~~l~~~~~~~~~~v~~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lvi~Gv~Td~CV~ 164 (243)
..|++-...+....+++.+|.|..+| .++.|.+||+|+.+ +|.++||+.|+++|||+|+.+++|++
T Consensus 89 aLL~d~WGpgl~~~p~~~~vv~~l~P~~~D---~vL~kwrYsAF~~s-------~Llq~lr~~grdQLIItGVyaHigcl 158 (218)
T COG1535 89 ALLKDFWGPGLTASPEQQKVVDELAPGADD---TVLTKWRYSAFHRS-------PLLQMLREKGRDQLIITGVYAHIGCL 158 (218)
T ss_pred HHHHHhcCCCCCCChhhhhhHHhcCCCCCc---eEEeeeehhhhhcC-------hHHHHHHHcCCCcEEEeehhhhhhhh
Confidence 35877666666677888889887654 89999999999997 99999999999999999999999999
Q ss_pred cchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHHHHHHhhcCCcEEeeceeccc
Q 026098 165 DFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSFGA 239 (243)
Q Consensus 165 ~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~ga~V~~~~e~~~ 239 (243)
.|+.+|+-+++ ++.++.||.++++.+.| ...|..++++.+.|++++|++.
T Consensus 159 ---~TA~dAFm~di-----qpfmV~DAlaDfs~~~H-----------------~msLky~A~r~a~vv~Teell~ 208 (218)
T COG1535 159 ---TTATDAFMRDI-----QPFMVADALADFSEEEH-----------------RMSLKYVAGRCARVVMTEELLC 208 (218)
T ss_pred ---hhHHHHHHhcC-----cceeehhhhhhccHHHH-----------------HHHHHHHhcceeEEeeHHHHhh
Confidence 99999999999 99999999999999876 6689999999999999999875
No 16
>KOG4003 consensus Pyrazinamidase/nicotinamidase PNC1 [Defense mechanisms]
Probab=99.93 E-value=1.1e-25 Score=185.99 Aligned_cols=175 Identities=18% Similarity=0.237 Sum_probs=130.4
Q ss_pred eEEEEEcccCccCCCCCCCCC-CchhHHHHHHHHHHHHHHhhCCCcEEEEEecCCCCCC---------------------
Q 026098 30 TGLVLVDVVNGFCTVGSGNLP-DGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVP--------------------- 87 (243)
Q Consensus 30 ~ALlvID~QndF~~~~~g~l~-~~~~~~iv~~i~~li~~~r~~g~pVv~~~d~h~~~~~--------------------- 87 (243)
.+||||||||||+++. |.+. ....+..+..++.++..+.-.=..||+|.|||+.++-
T Consensus 2 ~~l~vvd~qndfi~~~-~~~~s~~E~~~~i~Pi~~lLq~~d~dw~~Vv~TKDwHP~~HiSF~~~h~~~~p~~~~t~~~~~ 80 (223)
T KOG4003|consen 2 KTLIVVDMQNDFISPL-GSLTSVPEGEELINPISDLLQDADRDWHRVVVTKDWHPSRHISFAKNHKDKEPYSTYTYHSPR 80 (223)
T ss_pred ceEEEEeccccccccc-cccccCCCchhhhccHHHHHHhcccccceEEEecccCcccceehhhhccCCCCCCCCcccCCC
Confidence 5899999999999963 4553 2233344445555554433222248999999987641
Q ss_pred -------C-CCCCCCccCCCCCCcccccccccccCcceEEEecC------CcccccccccCCCcchHHHHHHhCCCCEEE
Q 026098 88 -------E-PPYPPHCISGTDESNLVPELQWLENETNVTLRRKD------CIDGFLGSVEKDGSNVFVNWVKSNQIKNVL 153 (243)
Q Consensus 88 -------~-~~~p~~~~~gt~g~~i~~~l~~~~~~~~~~v~~K~------~~saF~~t~~~~~~~~L~~~L~~~gi~~lv 153 (243)
+ ..||.||+++|||.++++++..... ..++.|+ .||+|+...+- ..|+|..+|++++|+.|+
T Consensus 81 ~~d~V~~~~vl~p~HCv~ntwG~d~~~~~~~~~~---~~~I~KG~D~~~eSYSaF~D~~GR-~kt~L~~~L~k~~Id~V~ 156 (223)
T KOG4003|consen 81 PGDDVTQEGILWPVHCVKNTWGVDQIMDQVVTKH---IKIIDKGFDTDRESYSAFHDIWGR-HKTDLNKYLEKHHIDEVY 156 (223)
T ss_pred cCCchheeeecchhhhhccCCCCCcchhhhhhhh---eeecccCcchhHHHHHHHhhhccc-chhhHHHHHHHcCCCeEE
Confidence 0 1479999999999999999875432 3677887 38898754211 147999999999999999
Q ss_pred EEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHHHHHHhhc
Q 026098 154 VLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKG 226 (243)
Q Consensus 154 i~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~ 226 (243)
|+|+++|+||. .||++|...|| +.+|+.+|+++.+.+.|+. +-.....+++.++.-
T Consensus 157 IAGvA~DICVk---~TaL~A~~~~y-----~t~vI~E~~~Gsst~si~~---------~~~~F~k~k~e~IS~ 212 (223)
T KOG4003|consen 157 IAGVALDICVK---ATALSAAELGY-----KTTVILEYTRGSSTPSISD---------DPEVFNKVKEELISH 212 (223)
T ss_pred EeehhhHHHHH---HHHhhHHHhCc-----ceeeehhhhccCCCccccc---------CHHHHHHhhHHHhhc
Confidence 99999999999 99999999999 9999999999999987743 334445555555443
No 17
>KOG4044 consensus Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily) [General function prediction only]
Probab=99.73 E-value=3.4e-17 Score=134.19 Aligned_cols=149 Identities=25% Similarity=0.294 Sum_probs=115.0
Q ss_pred ccCCCCceEEEEEcccCccCCCCCCCCCCchhHHHHHHHHHHHHHHhhCCCcEEEEEecCCCCCCCCCCCCCccCCCCCC
Q 026098 23 FLSGDVKTGLVLVDVVNGFCTVGSGNLPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPEPPYPPHCISGTDES 102 (243)
Q Consensus 23 ~~~~~~~~ALlvID~QndF~~~~~g~l~~~~~~~iv~~i~~li~~~r~~g~pVv~~~d~h~~~~~~~~~p~~~~~gt~g~ 102 (243)
++.| .++++++.|||+.|.+ +++ -..++|.+..+|++++|..++|++.|. |+|... |
T Consensus 10 rl~P-~~t~fflCDmQEKFrp----ai~--yf~~iIs~~~rLl~aaril~vP~ivTE--qYP~gL----------G---- 66 (201)
T KOG4044|consen 10 RLNP-SSTVFFLCDMQEKFRP----AIP--YFPSIISVTTRLLAAARILQVPVIVTE--QYPEGL----------G---- 66 (201)
T ss_pred ecCC-CceEEEEechHhhhcc----cch--hhHHHHHHHHHHHHhhhhhCCcEEeec--cccccc----------c----
Confidence 4666 4999999999999997 454 367899999999999999999999998 665432 1
Q ss_pred cccccccccccCcceEEEecCCcccccccccCCCcchHHHHHHh-CCCCEEEEEeeecCcccccchhhHHHHHHCCCCCC
Q 026098 103 NLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKS-NQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAP 181 (243)
Q Consensus 103 ~i~~~l~~~~~~~~~~v~~K~~~saF~~t~~~~~~~~L~~~L~~-~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~ 181 (243)
..+++|...-.. ..+.|..+|.+.. +...-|.+ .|.++|+++|+.|++||. -|+.|+.++|.
T Consensus 67 ~TV~eLd~~g~~---~~~~KT~FSM~~p--------~v~~s~~~i~~~k~VvL~GiEthvCv~---qTa~dLl~rgl--- 129 (201)
T KOG4044|consen 67 KTVPELDIEGLK---LNLSKTKFSMVLP--------PVEDSLKDIFGGKTVVLFGIETHVCVL---QTALDLLERGL--- 129 (201)
T ss_pred ccchhhchhhhc---ccccccceeeeCc--------hHHHHHHhccCCCeEEEEecchheehH---HHHHHHHhCCc---
Confidence 123444322111 3578999999965 45666666 678899999999999999 79999999999
Q ss_pred CCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHHHHH
Q 026098 182 LEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLF 222 (243)
Q Consensus 182 ~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~ 222 (243)
+|+|+.|||+|++.-+. ..|.++|+++|..
T Consensus 130 --~VhvVaDacSSRs~~DR---------~~Al~r~rq~G~~ 159 (201)
T KOG4044|consen 130 --NVHVVADACSSRSNQDR---------DLALERMRQAGAN 159 (201)
T ss_pred --eEEEEeehhccccchhH---------HHHHHHHHhcCCc
Confidence 99999999999887432 1366667776543
No 18
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=56.37 E-value=11 Score=31.34 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=38.1
Q ss_pred hHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEec
Q 026098 139 VFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYS 189 (243)
Q Consensus 139 ~L~~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~ 189 (243)
.+.++|...|+..+..-|...|-|+- +-+..+.+.|+ +|+|++
T Consensus 90 ~i~~~l~~~gi~~~~~~g~EADDvIa---tla~~~~~~~~-----~v~IvS 132 (169)
T PF02739_consen 90 YIKELLEALGIPVLEVPGYEADDVIA---TLAKKASEEGF-----EVIIVS 132 (169)
T ss_dssp HHHHHHHHTTSEEEEETTB-HHHHHH---HHHHHHHHTTC-----EEEEE-
T ss_pred HHHHHHHHCCCCEecCCCCcHHHHHH---HHHhhhccCCC-----EEEEEc
Confidence 56788889999999999999999999 99999999999 998864
No 19
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=54.75 E-value=35 Score=32.55 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=44.8
Q ss_pred HHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHHH
Q 026098 141 VNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIG 220 (243)
Q Consensus 141 ~~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~ 220 (243)
....++.|++++++..-+.+.|.. .|..+...|+ +++|+...++...... -
T Consensus 109 ~~~a~~~G~~~~vtetssGN~G~a----lA~aaa~~Gl-----~~~V~mp~~s~~~k~~--------------------k 159 (419)
T TIGR01415 109 AYYAKIEGAKRLVTETGAGQWGSA----LSLAGALFGL-----ECKVFMVRVSFNQKPY--------------------R 159 (419)
T ss_pred HHHHHHcCCCeEEEecCchHHHHH----HHHHHHHcCC-----cEEEEEeCCCcccCHH--------------------H
Confidence 345567899998886445676654 7888888999 8877766533211111 1
Q ss_pred HHHhhcCCcEEeece
Q 026098 221 LFIAKGRGAKVVSGV 235 (243)
Q Consensus 221 l~~~~~~ga~V~~~~ 235 (243)
..+|+..||+|..+.
T Consensus 160 ~~~m~~~GA~Vi~~~ 174 (419)
T TIGR01415 160 KYLMELYGAEVIPSP 174 (419)
T ss_pred HHHHHHcCCEEEEEC
Confidence 358899999998754
No 20
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=50.69 E-value=35 Score=32.39 Aligned_cols=62 Identities=21% Similarity=0.209 Sum_probs=43.4
Q ss_pred HhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHHHHHHh
Q 026098 145 KSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIA 224 (243)
Q Consensus 145 ~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~ 224 (243)
++.|.+.+|+.--+.+.++- ||.-|...|+ +++|+.... +.+. +...++.|
T Consensus 102 ~~~Gk~~vIaetgaGnhG~A----~A~~aa~~Gl-----~c~I~mp~~---d~~r-----------------q~~nv~~m 152 (397)
T PRK04346 102 KRMGKKRIIAETGAGQHGVA----TATAAALLGL-----ECVIYMGAE---DVER-----------------QALNVFRM 152 (397)
T ss_pred HHcCCCeEEEecCcHHHHHH----HHHHHHHcCC-----cEEEEecCC---chhh-----------------hhhHHHHH
Confidence 55788888774555667775 8888889999 888877653 1110 12246789
Q ss_pred hcCCcEEeece
Q 026098 225 KGRGAKVVSGV 235 (243)
Q Consensus 225 ~~~ga~V~~~~ 235 (243)
+..||+|++..
T Consensus 153 ~~lGA~Vv~v~ 163 (397)
T PRK04346 153 KLLGAEVVPVT 163 (397)
T ss_pred HHCCCEEEEEC
Confidence 99999999865
No 21
>PLN02618 tryptophan synthase, beta chain
Probab=48.91 E-value=36 Score=32.43 Aligned_cols=63 Identities=17% Similarity=0.142 Sum_probs=44.9
Q ss_pred HHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHHHHHH
Q 026098 144 VKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFI 223 (243)
Q Consensus 144 L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~ 223 (243)
.++.|.+++|+.--+.+.|+- +|.-|...|+ +++|+..... .+. ....+..
T Consensus 114 A~~~g~~~vIaesgaGNhG~A----lA~aaa~~Gl-----~~~I~m~~~~---~~~-----------------~~~nv~~ 164 (410)
T PLN02618 114 AKRLGKKRIIAETGAGQHGVA----TATVCARFGL-----ECIVYMGAQD---MER-----------------QALNVFR 164 (410)
T ss_pred HHHcCCCEEEEEcCcHHHHHH----HHHHHHHcCC-----cEEEEEcCCc---hhh-----------------hhhhHHH
Confidence 345788888877556778887 7888888999 8888876632 110 1224568
Q ss_pred hhcCCcEEeece
Q 026098 224 AKGRGAKVVSGV 235 (243)
Q Consensus 224 ~~~~ga~V~~~~ 235 (243)
|+..||+|+...
T Consensus 165 mr~lGA~Vi~v~ 176 (410)
T PLN02618 165 MRLLGAEVRPVH 176 (410)
T ss_pred HHHCCCEEEEEe
Confidence 999999998873
No 22
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=48.44 E-value=55 Score=29.88 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=43.8
Q ss_pred HHHhCCCCEEEEEe-eecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHHHH
Q 026098 143 WVKSNQIKNVLVLG-ICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGL 221 (243)
Q Consensus 143 ~L~~~gi~~lvi~G-v~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l 221 (243)
..+++|+.+|+-+| ...|.|.- +|.-|..+|+ +++++.+...+.+.+.. ....-+
T Consensus 60 ~a~~~G~~~vvs~ggs~gN~g~a----lA~~a~~~Gl-----~~~iv~~~~~~~~~~~~---------------~~~~~~ 115 (337)
T TIGR01274 60 DAQAQGCTTLVSIGGIQSNQTRQ----VAAVAAHLGM-----KCVLVQENWVNYSDAVY---------------DRVGNI 115 (337)
T ss_pred HHHHcCCCEEEECCCCcchHHHH----HHHHHHHcCC-----cEEEEeccCCCccccch---------------hccchH
Confidence 34568999988775 44576765 8888999999 88877655433222110 011124
Q ss_pred HHhhcCCcEEeece
Q 026098 222 FIAKGRGAKVVSGV 235 (243)
Q Consensus 222 ~~~~~~ga~V~~~~ 235 (243)
.+++..||+|+.+.
T Consensus 116 ~~~~~~GA~v~~v~ 129 (337)
T TIGR01274 116 QLSRIMGADVRLDP 129 (337)
T ss_pred HHHHHcCCEEEEeC
Confidence 46788898887653
No 23
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=48.13 E-value=59 Score=30.15 Aligned_cols=63 Identities=19% Similarity=0.152 Sum_probs=41.4
Q ss_pred HHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHHHHHH
Q 026098 144 VKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFI 223 (243)
Q Consensus 144 L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~ 223 (243)
.++.|.+.+++.+-..|.|.. +|.-|...|+ +++|+.........+ ..+.+
T Consensus 77 a~~~g~~~vv~~~ssGN~g~a----lA~~a~~~G~-----~~~ivvp~~~~~~~~--------------------~~~~~ 127 (365)
T cd06446 77 AKRMGKKRVIAETGAGQHGVA----TATACALFGL-----ECEIYMGAVDVERQP--------------------LNVFR 127 (365)
T ss_pred HHHcCCCeEEEecCchHHHHH----HHHHHHHhCC-----CeEEEEcCCcccccc--------------------chHHH
Confidence 447888888875555677766 7888888999 887776543211111 12346
Q ss_pred hhcCCcEEeece
Q 026098 224 AKGRGAKVVSGV 235 (243)
Q Consensus 224 ~~~~ga~V~~~~ 235 (243)
++..||+|+.+.
T Consensus 128 ~~~~GAeV~~~~ 139 (365)
T cd06446 128 MELLGAEVVPVP 139 (365)
T ss_pred HHHCCCEEEEeC
Confidence 788888887654
No 24
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=47.56 E-value=66 Score=29.35 Aligned_cols=40 Identities=8% Similarity=0.134 Sum_probs=30.4
Q ss_pred HHHhCCCCEEEEEe-eecCcccccchhhHHHHHHCCCCCCCCcEEEecCC
Q 026098 143 WVKSNQIKNVLVLG-ICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRG 191 (243)
Q Consensus 143 ~L~~~gi~~lvi~G-v~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da 191 (243)
..+++|+++|+-+| ...|.|.. +|.-+..+|+ +++++.+.
T Consensus 61 ~a~~~G~~~vvs~G~s~GN~g~a----lA~aa~~~G~-----~~~iv~~~ 101 (337)
T PRK12390 61 DALAQGADTLVSIGGVQSNHTRQ----VAAVAAHLGM-----KCVLVQEN 101 (337)
T ss_pred HHHHcCCCEEEEeCCCccHHHHH----HHHHHHHcCC-----eEEEEeCC
Confidence 34468999988876 44566665 8888999999 88887644
No 25
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=47.26 E-value=41 Score=31.96 Aligned_cols=63 Identities=21% Similarity=0.150 Sum_probs=42.9
Q ss_pred HHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHHHHHH
Q 026098 144 VKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFI 223 (243)
Q Consensus 144 L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~ 223 (243)
.++.|.+.+|+.--+.+.++- +|.-|...|+ +++|+...... +. +...+..
T Consensus 105 A~~~G~~~vI~etgsGnhG~A----~A~aaa~~Gl-----~~~I~m~~~d~---~~-----------------q~~nv~~ 155 (402)
T PRK13028 105 AKRMGKKRLIAETGAGQHGVA----TATAAALFGL-----ECEIYMGEVDI---ER-----------------QHPNVFR 155 (402)
T ss_pred HHHcCCCeEEEecCcHHHHHH----HHHHHHHcCC-----CEEEEECCCcc---hh-----------------hHHHHHH
Confidence 345787888775555666766 7888888999 88888654311 10 0123668
Q ss_pred hhcCCcEEeece
Q 026098 224 AKGRGAKVVSGV 235 (243)
Q Consensus 224 ~~~~ga~V~~~~ 235 (243)
|+..||+|+...
T Consensus 156 mr~~GAeVi~v~ 167 (402)
T PRK13028 156 MKLLGAEVVPVT 167 (402)
T ss_pred HHHcCCEEEEEc
Confidence 999999998765
No 26
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=46.76 E-value=50 Score=31.59 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=43.0
Q ss_pred HHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHHHH
Q 026098 142 NWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGL 221 (243)
Q Consensus 142 ~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l 221 (243)
...++.|+++++...-+.+.|.. .|..+...|+ +++|+..-++ +...- . -.
T Consensus 119 ~~a~~~G~~~~vtetgsGN~G~a----lA~aaa~~Gl-----~~~V~mp~~s-~~~k~--~-----------------r~ 169 (427)
T PRK12391 119 YYNKKEGIKRLTTETGAGQWGSA----LALACALFGL-----ECTVFMVRVS-YEQKP--Y-----------------RR 169 (427)
T ss_pred HHHHHCCCCEEEEccCchHHHHH----HHHHHHHcCC-----cEEEEEecCC-cccCH--H-----------------HH
Confidence 34577898888774444566655 7788888999 8888766432 22110 0 12
Q ss_pred HHhhcCCcEEeece
Q 026098 222 FIAKGRGAKVVSGV 235 (243)
Q Consensus 222 ~~~~~~ga~V~~~~ 235 (243)
.+|+..||+|+.+.
T Consensus 170 ~~mr~~GA~Vi~~~ 183 (427)
T PRK12391 170 SLMETYGAEVIPSP 183 (427)
T ss_pred HHHHHCCCEEEEEC
Confidence 48899999998864
No 27
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=44.01 E-value=59 Score=29.64 Aligned_cols=39 Identities=21% Similarity=0.403 Sum_probs=28.3
Q ss_pred HHhCCCCEEEEE-eeecCcccccchhhHHHHHHCCCCCCCCcEEEecCC
Q 026098 144 VKSNQIKNVLVL-GICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRG 191 (243)
Q Consensus 144 L~~~gi~~lvi~-Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da 191 (243)
.+++|+++|+.+ +..+|.+.- .|.-|..+|+ +++++...
T Consensus 65 a~~~G~~~vv~~~~ssGN~g~a----lA~~a~~~G~-----~~~ivvp~ 104 (329)
T PRK14045 65 ALSRGADVVITVGAVHSNHAFV----TGLAAKKLGL-----DAVLVLRG 104 (329)
T ss_pred HHHcCCCEEEEeCccHHHHHHH----HHHHHHHcCC-----eEEEEEeC
Confidence 345788988864 555565554 8888888999 77777663
No 28
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=43.61 E-value=59 Score=29.16 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=30.0
Q ss_pred HHhCCCCEEEEEe-eecCcccccchhhHHHHHHCCCCCCCCcEEEecCCc
Q 026098 144 VKSNQIKNVLVLG-ICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGC 192 (243)
Q Consensus 144 L~~~gi~~lvi~G-v~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~ 192 (243)
.+++|+++|+-+| ...|.+.- .|.-+..+|| +++++.+..
T Consensus 51 a~~~g~~~vv~~g~ssGN~g~a----lA~~a~~~G~-----~~~ivvp~~ 91 (311)
T TIGR01275 51 ALSKGADTVITVGAIQSNHARA----TALAAKKLGL-----DAVLVLREK 91 (311)
T ss_pred HHHcCCCEEEEcCCchhHHHHH----HHHHHHHhCC-----ceEEEecCC
Confidence 3457889898886 55566665 7777888999 888877763
No 29
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=42.11 E-value=85 Score=29.40 Aligned_cols=63 Identities=21% Similarity=0.141 Sum_probs=41.4
Q ss_pred HHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHHHHHH
Q 026098 144 VKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFI 223 (243)
Q Consensus 144 L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~ 223 (243)
.++.|.+++++..-+.+.|+. .|..+...|+ +++|+...... +.. ...+..
T Consensus 93 a~~~g~~~vi~e~ssGN~G~a----lA~~a~~~Gl-----~~~Iv~p~~~~-~~~-------------------~~~~~~ 143 (385)
T TIGR00263 93 AKRMGKKRIIAETGAGQHGVA----TATAAALLGL-----DCEVYMGAEDV-ERQ-------------------KPNVFR 143 (385)
T ss_pred HHHcCCCEEEEEcCcHHHHHH----HHHHHHHcCC-----CEEEEecCCcc-ccc-------------------chHHHH
Confidence 345678888875555667765 7888888999 88887654311 110 112457
Q ss_pred hhcCCcEEeece
Q 026098 224 AKGRGAKVVSGV 235 (243)
Q Consensus 224 ~~~~ga~V~~~~ 235 (243)
|+..||+|+...
T Consensus 144 ~~~~GA~Vv~v~ 155 (385)
T TIGR00263 144 MELLGAKVIPVT 155 (385)
T ss_pred HHHcCCEEEEEC
Confidence 888899988754
No 30
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=40.39 E-value=51 Score=33.00 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=44.0
Q ss_pred HHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHHHHHH
Q 026098 144 VKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFI 223 (243)
Q Consensus 144 L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~ 223 (243)
.++.|.+++++..-+.+.++- +|.-|...|+ +++|+...... +. +...+..
T Consensus 313 a~~~g~~~vi~e~gsGnhG~A----~A~~aa~~Gl-----~~~I~m~~~~~---~~-----------------~~~nv~~ 363 (610)
T PRK13803 313 AKRMGKTRIIAETGAGQHGVA----TATACALFGL-----KCTIFMGEEDI---KR-----------------QALNVER 363 (610)
T ss_pred HHHcCCCEEEEecChHHHHHH----HHHHHHHcCC-----cEEEEEeCCcc---cc-----------------hhhHHHH
Confidence 345788888875555777776 8888888999 88887654421 10 1123568
Q ss_pred hhcCCcEEeece
Q 026098 224 AKGRGAKVVSGV 235 (243)
Q Consensus 224 ~~~~ga~V~~~~ 235 (243)
|+..||+|+...
T Consensus 364 m~~~GA~Vi~v~ 375 (610)
T PRK13803 364 MKLLGANVIPVL 375 (610)
T ss_pred HHHCCCEEEEEC
Confidence 999999998764
No 31
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=39.31 E-value=41 Score=31.28 Aligned_cols=43 Identities=23% Similarity=0.240 Sum_probs=36.6
Q ss_pred CCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchh
Q 026098 149 IKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVH 200 (243)
Q Consensus 149 i~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h 200 (243)
..+|+|+|-+ -+|=. .|++.++++|| .|+++-+.+-++....+
T Consensus 2 ~~~VLVtGga-GyiGs---ht~l~L~~~gy-----~v~~vDNl~n~~~~sl~ 44 (343)
T KOG1371|consen 2 GKHVLVTGGA-GYIGS---HTVLALLKRGY-----GVVIVDNLNNSYLESLK 44 (343)
T ss_pred CcEEEEecCC-cceeh---HHHHHHHhCCC-----cEEEEecccccchhHHH
Confidence 4688999987 56777 79999999999 99999999999876654
No 32
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=38.46 E-value=74 Score=32.55 Aligned_cols=64 Identities=16% Similarity=0.059 Sum_probs=44.9
Q ss_pred HHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHHHHH
Q 026098 143 WVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLF 222 (243)
Q Consensus 143 ~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~ 222 (243)
..++.|.+++|+.--+.+.|+. +|.-+...|+ +++|+......... ..-+.
T Consensus 373 ~A~~~G~~~~IvetssGNhG~A----lA~aaA~~Gl-----~c~Ivmp~~~~~~~--------------------~~nv~ 423 (695)
T PRK13802 373 LVKRMGKTRVIAETGAGQHGVA----TATVCAMLGL-----KCRIYMGQIDARRQ--------------------ALNVA 423 (695)
T ss_pred HHHHcCCCCEEEEECcHHHHHH----HHHHHHHcCC-----CEEEEEeCCccccc--------------------HHHHH
Confidence 4445788888877667777876 7888888999 88887765422111 11356
Q ss_pred HhhcCCcEEeece
Q 026098 223 IAKGRGAKVVSGV 235 (243)
Q Consensus 223 ~~~~~ga~V~~~~ 235 (243)
.|+..||+|+.+.
T Consensus 424 ~mr~lGAeVi~v~ 436 (695)
T PRK13802 424 RMRMLGAEVVEVT 436 (695)
T ss_pred HHHHcCCEEEEEC
Confidence 8999999998754
No 33
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=37.91 E-value=36 Score=31.44 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=34.1
Q ss_pred EEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchh
Q 026098 151 NVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVH 200 (243)
Q Consensus 151 ~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h 200 (243)
+|+|+|-+.=+.- .|++.+++.|| +|+|+-++|.+......
T Consensus 2 ~iLVtGGAGYIGS----Htv~~Ll~~G~-----~vvV~DNL~~g~~~~v~ 42 (329)
T COG1087 2 KVLVTGGAGYIGS----HTVRQLLKTGH-----EVVVLDNLSNGHKIALL 42 (329)
T ss_pred eEEEecCcchhHH----HHHHHHHHCCC-----eEEEEecCCCCCHHHhh
Confidence 6888888865554 49999999999 99999999998776655
No 34
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=37.31 E-value=98 Score=27.71 Aligned_cols=42 Identities=10% Similarity=0.170 Sum_probs=31.2
Q ss_pred HHhCCCCEEEEEe-eecCcccccchhhHHHHHHCCCCCCCCcEEEecCCccc
Q 026098 144 VKSNQIKNVLVLG-ICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCAT 194 (243)
Q Consensus 144 L~~~gi~~lvi~G-v~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as 194 (243)
.+++|+++|+-+| -..|.+.- .|..+..+|+ +++++.+...+
T Consensus 47 a~~~g~~~vv~~ggs~GN~g~a----lA~~a~~~G~-----~~~i~v~~~~~ 89 (307)
T cd06449 47 ALAKGADTLVTVGGIQSNHTRQ----VAAVAAKLGL-----KCVLVQENWVP 89 (307)
T ss_pred HHHcCCCEEEECCCchhHHHHH----HHHHHHHcCC-----eEEEEecCCCC
Confidence 3458888888886 45566655 8888889999 88887776544
No 35
>PRK06381 threonine synthase; Validated
Probab=36.53 E-value=1.4e+02 Score=26.93 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=41.9
Q ss_pred HHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHH
Q 026098 140 FVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHI 219 (243)
Q Consensus 140 L~~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~ 219 (243)
+-..++++|.++|+ ++-+.|.++- .|.-|...|| +++|+.....+ ..
T Consensus 54 ~l~~a~~~g~~~lv-~aSsGN~g~a----lA~~aa~~G~-----~~~ivvp~~~~--~~--------------------- 100 (319)
T PRK06381 54 HVRRAMRLGYSGIT-VGTCGNYGAS----IAYFARLYGL-----KAVIFIPRSYS--NS--------------------- 100 (319)
T ss_pred HHHHHHHcCCCEEE-EeCCcHHHHH----HHHHHHHcCC-----cEEEEECCCCC--HH---------------------
Confidence 33445668877765 5667777776 7778888999 88887765432 11
Q ss_pred HHHHhhcCCcEEeece
Q 026098 220 GLFIAKGRGAKVVSGV 235 (243)
Q Consensus 220 ~l~~~~~~ga~V~~~~ 235 (243)
-+..++..||+|+...
T Consensus 101 ~~~~l~~~GA~V~~~~ 116 (319)
T PRK06381 101 RVKEMEKYGAEIIYVD 116 (319)
T ss_pred HHHHHHHcCCEEEEcC
Confidence 1346788888887654
No 36
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=34.63 E-value=1.1e+02 Score=27.73 Aligned_cols=42 Identities=7% Similarity=0.134 Sum_probs=29.6
Q ss_pred HHhCCCCEEEEEee-ecCcccccchhhHHHHHHCCCCCCCCcEEEecCCccc
Q 026098 144 VKSNQIKNVLVLGI-CTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCAT 194 (243)
Q Consensus 144 L~~~gi~~lvi~Gv-~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as 194 (243)
.++.|+++|+-+|- ..|.+.- .|.-+...|+ +++|+.+...+
T Consensus 59 a~~~g~~~vvt~g~s~gN~g~a----lA~~a~~~G~-----~~~i~vp~~~~ 101 (331)
T PRK03910 59 ALAQGADTLITAGAIQSNHARQ----TAAAAAKLGL-----KCVLLLENPVP 101 (331)
T ss_pred HHHcCCCEEEEcCcchhHHHHH----HHHHHHHhCC-----cEEEEEcCCCC
Confidence 33578898886653 3355554 7888888999 88887776654
No 37
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=33.30 E-value=1.2e+02 Score=25.83 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=40.1
Q ss_pred HHHHHhCCC--CEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHH
Q 026098 141 VNWVKSNQI--KNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHH 218 (243)
Q Consensus 141 ~~~L~~~gi--~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~ 218 (243)
-..+++.|. ...+++.-..|.++- .+.-+...|+ +++++.+.-.+ ..
T Consensus 39 l~~a~~~g~~~~~~vv~~ssGN~g~a----lA~~a~~~g~-----~~~v~~p~~~~---~~------------------- 87 (244)
T cd00640 39 ILLAEEEGKLPKGVIIESTGGNTGIA----LAAAAARLGL-----KCTIVMPEGAS---PE------------------- 87 (244)
T ss_pred HHHHHHcCCCCCCEEEEeCCcHHHHH----HHHHHHHcCC-----CEEEEECCCCC---HH-------------------
Confidence 344445663 455666655777765 7777777999 88877665441 11
Q ss_pred HHHHHhhcCCcEEeece
Q 026098 219 IGLFIAKGRGAKVVSGV 235 (243)
Q Consensus 219 ~~l~~~~~~ga~V~~~~ 235 (243)
-+.+++..|++|....
T Consensus 88 -~~~~~~~~Ga~v~~~~ 103 (244)
T cd00640 88 -KVAQMRALGAEVVLVP 103 (244)
T ss_pred -HHHHHHHCCCEEEEEC
Confidence 1346777888887754
No 38
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=32.42 E-value=1.7e+02 Score=26.30 Aligned_cols=63 Identities=19% Similarity=0.121 Sum_probs=41.1
Q ss_pred HHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHH
Q 026098 140 FVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHI 219 (243)
Q Consensus 140 L~~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~ 219 (243)
+-..+.+.|.++|+.+ ...|.|+- .|.-+...|+ +++++.+...+ ..
T Consensus 61 ~l~~a~~~g~~~vv~~-SsGN~g~a----lA~~a~~~G~-----~~~ivvp~~~~--~~--------------------- 107 (324)
T cd01563 61 AVSKAKELGVKAVACA-STGNTSAS----LAAYAARAGI-----KCVVFLPAGKA--LG--------------------- 107 (324)
T ss_pred HHHHHHHcCCCEEEEe-CCCHHHHH----HHHHHHHcCC-----ceEEEEeCCCC--HH---------------------
Confidence 3344445677776654 67777776 6778888999 88887765442 11
Q ss_pred HHHHhhcCCcEEeece
Q 026098 220 GLFIAKGRGAKVVSGV 235 (243)
Q Consensus 220 ~l~~~~~~ga~V~~~~ 235 (243)
-+..++..||+|+.+.
T Consensus 108 k~~~l~~~GA~Vi~~~ 123 (324)
T cd01563 108 KLAQALAYGATVLAVE 123 (324)
T ss_pred HHHHHHHcCCEEEEEC
Confidence 1336777888888654
No 39
>PRK08329 threonine synthase; Validated
Probab=31.31 E-value=1.9e+02 Score=26.55 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=30.2
Q ss_pred hHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCC
Q 026098 139 VFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRG 191 (243)
Q Consensus 139 ~L~~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da 191 (243)
.+-..+++.|.++|+.+. ..|.+.. .|.-|...|+ +++|+...
T Consensus 94 ~~i~~a~~~g~~~vv~aS-sGN~g~a----lA~~aa~~G~-----~~~v~vp~ 136 (347)
T PRK08329 94 VTVAKLKEEGINEVVIDS-SGNAALS----LALYSLSEGI-----KVHVFVSY 136 (347)
T ss_pred HHHHHHHHcCCCEEEEEC-CCcHHHH----HHHHHHHcCC-----cEEEEECC
Confidence 334456678999888876 6677766 6667777999 77776543
No 40
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=30.61 E-value=1.9e+02 Score=25.51 Aligned_cols=45 Identities=7% Similarity=0.141 Sum_probs=31.4
Q ss_pred HHHHHHhCCCC---EEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcc
Q 026098 140 FVNWVKSNQIK---NVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCA 193 (243)
Q Consensus 140 L~~~L~~~gi~---~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~a 193 (243)
+-..+++.|.. +.+++.-..|.|.- .|.-|...|+ +++|+.....
T Consensus 40 ~l~~a~~~g~~~~~~~vv~~SsGN~g~a----lA~~a~~~G~-----~~~i~vp~~~ 87 (291)
T cd01561 40 MIEDAEKRGLLKPGTTIIEPTSGNTGIG----LAMVAAAKGY-----RFIIVMPETM 87 (291)
T ss_pred HHHHHHHcCCCCCCCEEEEeCCChHHHH----HHHHHHHcCC-----eEEEEECCCC
Confidence 33445556652 45677888888876 7888888999 8888776543
No 41
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=29.78 E-value=1e+02 Score=24.01 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=34.9
Q ss_pred hHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCC
Q 026098 139 VFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRG 191 (243)
Q Consensus 139 ~L~~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da 191 (243)
++.+++.+++++.++|+.-.+|+.-. +..+.++|. +|+++.-.
T Consensus 90 d~~~~~~~~~~d~ivLvSgD~Df~~~-----i~~lr~~G~-----~V~v~~~~ 132 (149)
T cd06167 90 DALELAYKRRIDTIVLVSGDSDFVPL-----VERLRELGK-----RVIVVGFE 132 (149)
T ss_pred HHHHHhhhcCCCEEEEEECCccHHHH-----HHHHHHcCC-----EEEEEccC
Confidence 45566667799999999988876655 888999999 99998765
No 42
>PRK07591 threonine synthase; Validated
Probab=27.59 E-value=2.2e+02 Score=27.05 Aligned_cols=64 Identities=13% Similarity=0.040 Sum_probs=41.5
Q ss_pred hHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHH
Q 026098 139 VFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHH 218 (243)
Q Consensus 139 ~L~~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~ 218 (243)
.+-..+++.|.++| +++-..|.+.. .|.-|...|+ +++|+.....+ ..
T Consensus 127 ~~v~~A~~~g~~~v-v~aSsGN~g~a----lA~~aa~~Gl-----~~~I~vP~~~~---~~------------------- 174 (421)
T PRK07591 127 VALTAARELGFTTV-ACASTGNLANS----VAAHAARAGL-----DSCVFIPADLE---AG------------------- 174 (421)
T ss_pred HHHHHHHHcCCCEE-EEeCCCHHHHH----HHHHHHHcCC-----CEEEEEcCCCC---HH-------------------
Confidence 33445667898887 56788888776 5666667999 77776554221 11
Q ss_pred HHHHHhhcCCcEEeece
Q 026098 219 IGLFIAKGRGAKVVSGV 235 (243)
Q Consensus 219 ~~l~~~~~~ga~V~~~~ 235 (243)
-+..++..||+|+...
T Consensus 175 -k~~~~~~~GA~Vi~v~ 190 (421)
T PRK07591 175 -KIVGTLVYGPTLVAVD 190 (421)
T ss_pred -HHHHHHHcCCEEEEEC
Confidence 1346778888887643
No 43
>PRK05973 replicative DNA helicase; Provisional
Probab=27.04 E-value=1.2e+02 Score=26.72 Aligned_cols=47 Identities=11% Similarity=0.031 Sum_probs=31.6
Q ss_pred eEEEEEcccCccCCCCCCCCCCchhHHHHHHHHHHHHHHhhCCCcEEEEEecCC
Q 026098 30 TGLVLVDVVNGFCTVGSGNLPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHY 83 (243)
Q Consensus 30 ~ALlvID~QndF~~~~~g~l~~~~~~~iv~~i~~li~~~r~~g~pVv~~~d~h~ 83 (243)
.-+||||....|... ...+ .+...+..|...+++.|++||.+...+.
T Consensus 148 ~~lVVIDsLq~l~~~----~~~~---el~~~~~~Lk~~Ak~~gitvIl~sQl~r 194 (237)
T PRK05973 148 GTLVVIDYLQLLDQR----REKP---DLSVQVRALKSFARERGLIIVFISQIDR 194 (237)
T ss_pred CCEEEEEcHHHHhhc----ccch---hHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 359999998777531 1111 2333456678888999999999985544
No 44
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=26.96 E-value=4.3e+02 Score=24.72 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=46.3
Q ss_pred chHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchh
Q 026098 138 NVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVH 200 (243)
Q Consensus 138 ~~L~~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h 200 (243)
.+|-+.+.+.+-.-|+-+|+++.--+. .++....+.|- .=+++--|+++++.+..
T Consensus 137 ~plik~iA~~~kPiIlSTGma~~~ei~---~av~~~r~~g~-----~~i~LLhC~s~YPap~e 191 (347)
T COG2089 137 LPLIKYIAKKGKPIILSTGMATIEEIE---EAVAILRENGN-----PDIALLHCTSAYPAPFE 191 (347)
T ss_pred hHHHHHHHhcCCCEEEEcccccHHHHH---HHHHHHHhcCC-----CCeEEEEecCCCCCCHH
Confidence 367788888888899999999999999 88888888888 66777789999988754
No 45
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=26.89 E-value=1.7e+02 Score=24.66 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=69.8
Q ss_pred ceEEEEEcccCccCCCCCCCCCCchhHHHHHHHHHHHHHHhhCCCcEEEEEecCCCCCCCCCCCCCccCCCCCCcccccc
Q 026098 29 KTGLVLVDVVNGFCTVGSGNLPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPEPPYPPHCISGTDESNLVPEL 108 (243)
Q Consensus 29 ~~ALlvID~QndF~~~~~g~l~~~~~~~iv~~i~~li~~~r~~g~pVv~~~d~h~~~~~~~~~p~~~~~gt~g~~i~~~l 108 (243)
..-=|++|+=|..+.-. . .+.-+.+.+.+...+++|+-++.+... . .. .=.-+.+.|
T Consensus 27 Gikgvi~DlDNTLv~wd-----~---~~~tpe~~~W~~e~k~~gi~v~vvSNn-~---e~-----------RV~~~~~~l 83 (175)
T COG2179 27 GIKGVILDLDNTLVPWD-----N---PDATPELRAWLAELKEAGIKVVVVSNN-K---ES-----------RVARAAEKL 83 (175)
T ss_pred CCcEEEEeccCceeccc-----C---CCCCHHHHHHHHHHHhcCCEEEEEeCC-C---HH-----------HHHhhhhhc
Confidence 34457889999988621 1 122345678888999999887766521 0 00 000011112
Q ss_pred cccccCcceEEEecCCcccccccccCCCcchHHHHHHhCC--CCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEE
Q 026098 109 QWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQ--IKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVI 186 (243)
Q Consensus 109 ~~~~~~~~~~v~~K~~~saF~~t~~~~~~~~L~~~L~~~g--i~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~ 186 (243)
.. +.+..-.. +|.. .|...|++.+ .++++++|=. .. +-++.+.-.|+ .++
T Consensus 84 ~v------~fi~~A~K--P~~~--------~fr~Al~~m~l~~~~vvmVGDq----L~---TDVlggnr~G~-----~tI 135 (175)
T COG2179 84 GV------PFIYRAKK--PFGR--------AFRRALKEMNLPPEEVVMVGDQ----LF---TDVLGGNRAGM-----RTI 135 (175)
T ss_pred CC------ceeecccC--ccHH--------HHHHHHHHcCCChhHEEEEcch----hh---hhhhcccccCc-----EEE
Confidence 11 12322222 2222 7888899865 5889999955 34 67888999999 999
Q ss_pred EecCCcccCC
Q 026098 187 VYSRGCATYD 196 (243)
Q Consensus 187 V~~Da~as~~ 196 (243)
+|+-...+-.
T Consensus 136 lV~Pl~~~d~ 145 (175)
T COG2179 136 LVEPLVAPDG 145 (175)
T ss_pred EEEEeccccc
Confidence 9887665533
No 46
>PRK10098 putative dehydrogenase; Provisional
Probab=26.31 E-value=1.2e+02 Score=28.33 Aligned_cols=65 Identities=11% Similarity=0.050 Sum_probs=42.2
Q ss_pred hHHhhhhc-cCCCCccccccCCCCceEEEEEcccCccCCCCCCCCCCchhHHHHHHHHHHHHHHhhCCCcEEEEEecCC
Q 026098 6 KTIDLLRN-ELPVEQESLFLSGDVKTGLVLVDVVNGFCTVGSGNLPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHY 83 (243)
Q Consensus 6 ~~~~~~~~-~~~~~~~~~~~~~~~~~ALlvID~QndF~~~~~g~l~~~~~~~iv~~i~~li~~~r~~g~pVv~~~d~h~ 83 (243)
.-+++++. .+-+..++ ++-. ...++++||-||.|-.. .....+...++.+|+.|+-+|.+++.|.
T Consensus 55 ~Y~~~l~~G~i~~~~~~-~v~~-~~~a~~~vDg~~g~G~~-----------a~~~Am~~aie~Ar~~Gi~~v~vrnS~H 120 (350)
T PRK10098 55 SYVRSWSQGHLQLNHHA-KIVK-DAGAVLTLDGDRGFGQV-----------VAHEAMALGIERARQHGICAVALRNSHH 120 (350)
T ss_pred HHHHHHHcCCcCCCCCe-EEEe-cCCcEEEEECCCCccHH-----------HHHHHHHHHHHHHHHhCEEEEEEecCCC
Confidence 34555552 22232333 3333 47799999999998752 1223467889999999999998886444
No 47
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=26.27 E-value=2.2e+02 Score=25.70 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=39.4
Q ss_pred HHhCC---CCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHHHH
Q 026098 144 VKSNQ---IKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIG 220 (243)
Q Consensus 144 L~~~g---i~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~ 220 (243)
+.+.| .++|+-++ ..|.++. .|..+..+|| +++|+.....+ .. -
T Consensus 43 a~~~g~~~~~~vv~aS-sGN~g~a----lA~~a~~~G~-----~~~iv~p~~~~--~~---------------------k 89 (316)
T cd06448 43 SAKQGLNECVHVVCSS-GGNAGLA----AAYAARKLGV-----PCTIVVPESTK--PR---------------------V 89 (316)
T ss_pred HHHhhcccCCeEEEeC-CcHHHHH----HHHHHHHcCC-----CEEEEECCCCC--HH---------------------H
Confidence 34455 67777776 5677776 7788888999 88887776532 11 1
Q ss_pred HHHhhcCCcEEeec
Q 026098 221 LFIAKGRGAKVVSG 234 (243)
Q Consensus 221 l~~~~~~ga~V~~~ 234 (243)
+..|+..||+|+..
T Consensus 90 ~~~l~~~GA~v~~~ 103 (316)
T cd06448 90 VEKLRDEGATVVVH 103 (316)
T ss_pred HHHHHHcCCEEEEE
Confidence 34677788888764
No 48
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=26.17 E-value=1.1e+02 Score=24.82 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=36.0
Q ss_pred ccCCCCceEEEEEcccCccCCCCCCCCCCchhHHHHHHHHHHHHHHhhCCCcEEEEEecCC
Q 026098 23 FLSGDVKTGLVLVDVVNGFCTVGSGNLPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHY 83 (243)
Q Consensus 23 ~~~~~~~~ALlvID~QndF~~~~~g~l~~~~~~~iv~~i~~li~~~r~~g~pVv~~~d~h~ 83 (243)
=++|+..+++-++|+....+.-. ...++. ...+++...+.|.|||...|..+
T Consensus 36 GiDPG~ttgiAildL~G~~l~l~----S~R~~~-----~~evi~~I~~~G~PviVAtDV~p 87 (138)
T PF04312_consen 36 GIDPGTTTGIAILDLDGELLDLK----SSRNMS-----RSEVIEWISEYGKPVIVATDVSP 87 (138)
T ss_pred EECCCceeEEEEEecCCcEEEEE----eecCCC-----HHHHHHHHHHcCCEEEEEecCCC
Confidence 36788899999999998887632 112221 24556666788999998887544
No 49
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=26.02 E-value=74 Score=27.75 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=36.8
Q ss_pred hHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEec
Q 026098 139 VFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYS 189 (243)
Q Consensus 139 ~L~~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~ 189 (243)
.+.++|+..|+..+..-|...|-++- +-|..+...|+ +++|++
T Consensus 89 ~~~~~l~~~gi~~i~~~~~EADD~ia---~la~~~~~~g~-----~~~I~S 131 (240)
T cd00008 89 LIKELLEALGIPVLEIEGYEADDVIG---TLAKKAEAEGY-----KVVIVS 131 (240)
T ss_pred HHHHHHHHCCCCEEecCCcCHHHHHH---HHHHHHHHcCC-----eEEEEe
Confidence 67788889999999999999988887 77788888899 888876
No 50
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=25.53 E-value=1.3e+02 Score=28.55 Aligned_cols=69 Identities=20% Similarity=0.131 Sum_probs=45.7
Q ss_pred hHHHHHH--hCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHH
Q 026098 139 VFVNWVK--SNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLM 216 (243)
Q Consensus 139 ~L~~~L~--~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~ 216 (243)
.+...|- +.|.+.||-=--+....|. ||......|. +++|..-|-.-..
T Consensus 159 av~QallakrlGkknviaETGAGQhGva----tA~a~a~FGl-----~C~v~mgAed~~r-------------------- 209 (477)
T KOG1395|consen 159 AVAQALLAKRLGKKNVIAETGAGQHGVA----TATACAKFGL-----DCTVYMGAEDYRR-------------------- 209 (477)
T ss_pred HHHHHHHHHHhcccceeeccCCCccchH----HHHHHHHhCC-----ceEEEechhHHHH--------------------
Confidence 5555443 3788888865555555555 7777777888 8888665432211
Q ss_pred HHHHHHHhhcCCcEEeecee
Q 026098 217 HHIGLFIAKGRGAKVVSGVS 236 (243)
Q Consensus 217 ~~~~l~~~~~~ga~V~~~~e 236 (243)
+....++|+..||+|.++..
T Consensus 210 qalnvfrmrllGAkV~pv~s 229 (477)
T KOG1395|consen 210 QALNVFRMRLLGAKVHPVTS 229 (477)
T ss_pred HHHHHHHHHHhCceEeecCC
Confidence 13356899999999998754
No 51
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=25.25 E-value=1.1e+02 Score=28.32 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=33.3
Q ss_pred CCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcc
Q 026098 147 NQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCA 193 (243)
Q Consensus 147 ~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~a 193 (243)
.|++++|=+|-.-++-++ .||.-|..+|+ +.+++-+.-.
T Consensus 62 ~g~dTlvT~GgiQSNh~r---~tAavA~~lGl-----~~v~ile~~~ 100 (323)
T COG2515 62 KGADTLVTYGGIQSNHVR---QTAAVAAKLGL-----KCVLILENIE 100 (323)
T ss_pred cCCcEEEEecccchhHHH---HHHHHHHhcCC-----cEEEEEeccc
Confidence 799999999999999999 89999999999 6666555444
No 52
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=25.15 E-value=1.2e+02 Score=24.47 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=22.3
Q ss_pred ceEEEEEcccCccCCCCCCCCCCchhHHHHHHHHHHHHHHhhCCCcEEEEE
Q 026098 29 KTGLVLVDVVNGFCTVGSGNLPDGQISEMVDESVRLARVFCEKKWPVFAFL 79 (243)
Q Consensus 29 ~~ALlvID~QndF~~~~~g~l~~~~~~~iv~~i~~li~~~r~~g~pVv~~~ 79 (243)
+.-|||||--..+... ........-.-++.|.+.+++.|..|+.+.
T Consensus 141 ~~~lvviD~l~~~~~~-----~~~~~~~~~~~~~~l~~la~~~~~~vi~v~ 186 (193)
T PF13481_consen 141 GPDLVVIDPLQSLHDG-----DENSNSAVAQLMQELKRLAKEYGVAVILVH 186 (193)
T ss_dssp --SEEEEE-GGGG--S------TT-HHHHHHHHHHHHHHHHHH--EEEEEE
T ss_pred CCcEEEEcCHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 3569999999998873 111122222333444444566788888887
No 53
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=25.03 E-value=88 Score=27.44 Aligned_cols=37 Identities=14% Similarity=0.043 Sum_probs=28.3
Q ss_pred HHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEec
Q 026098 143 WVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYS 189 (243)
Q Consensus 143 ~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~ 189 (243)
..++++.++| +++-..|.|.- .|..+...|+ +++++.
T Consensus 50 ~a~~~~~~~v-v~assGN~g~a----~A~~a~~~g~-----~~~i~~ 86 (306)
T PF00291_consen 50 RAKEKGGRTV-VGASSGNHGRA----LAYAAARLGL-----KCTIVV 86 (306)
T ss_dssp HHHHTTTSEE-EEESSSHHHHH----HHHHHHHHTC-----EEEEEE
T ss_pred hcccccccee-eeeccCCceeh----hhhhhhhccc-----cceeee
Confidence 3445677888 77888888887 6777777899 888877
No 54
>PRK08197 threonine synthase; Validated
Probab=24.85 E-value=3.4e+02 Score=25.34 Aligned_cols=63 Identities=14% Similarity=0.058 Sum_probs=40.4
Q ss_pred hHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcchhhhhhccccCCCchHHHHH
Q 026098 139 VFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHH 218 (243)
Q Consensus 139 ~L~~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~~h~a~~~~~~~~~~~~~~~~ 218 (243)
.+.....+.|.++|+ +.-+.|.+.. .|.-+...|+ +++|+-....+. .
T Consensus 117 ~~i~~a~~~g~~~vv-~aSsGN~g~a----lA~~aa~~G~-----~~~v~vp~~~~~---~------------------- 164 (394)
T PRK08197 117 VGVSRAKELGVKHLA-MPTNGNAGAA----WAAYAARAGI-----RATIFMPADAPE---I------------------- 164 (394)
T ss_pred HHHHHHHHcCCCEEE-EeCCcHHHHH----HHHHHHHcCC-----cEEEEEcCCCCH---H-------------------
Confidence 334445568877655 4556677766 6777778999 777776643321 1
Q ss_pred HHHHHhhcCCcEEeec
Q 026098 219 IGLFIAKGRGAKVVSG 234 (243)
Q Consensus 219 ~~l~~~~~~ga~V~~~ 234 (243)
-+..++.+||+|+..
T Consensus 165 -k~~~~~~~GA~Vi~v 179 (394)
T PRK08197 165 -TRLECALAGAELYLV 179 (394)
T ss_pred -HHHHHHHcCCEEEEE
Confidence 134677888888765
No 55
>smart00475 53EXOc 5'-3' exonuclease.
Probab=23.93 E-value=91 Score=27.68 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=36.9
Q ss_pred hHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEec
Q 026098 139 VFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYS 189 (243)
Q Consensus 139 ~L~~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~ 189 (243)
.+.++|+..|+..+..-|...|-.+- +-++.+...|+ .++|++
T Consensus 88 ~~~~~l~~~gi~~i~~~g~EADD~ia---tla~~~~~~g~-----~~~IvS 130 (259)
T smart00475 88 LIKELLDALGIPVLEVEGYEADDVIA---TLAKKAEAEGY-----EVRIVS 130 (259)
T ss_pred HHHHHHHHCCCCEEeeCCcCHHHHHH---HHHHHHHhCCC-----eEEEEe
Confidence 57788889999999999998888887 77888888899 888876
No 56
>PRK06721 threonine synthase; Reviewed
Probab=23.79 E-value=2.3e+02 Score=26.12 Aligned_cols=41 Identities=10% Similarity=0.067 Sum_probs=28.0
Q ss_pred HHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCc
Q 026098 142 NWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGC 192 (243)
Q Consensus 142 ~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~ 192 (243)
...+++|.++|+.+ -..|.+.- .|.-+...|+ +++|+....
T Consensus 68 ~~a~~~g~~~vV~a-SsGN~G~a----lA~~aa~~G~-----~~~vvvp~~ 108 (352)
T PRK06721 68 AKAKEEGSEAIICA-STGNTSAS----AAAYAARLGM-----KCIIVIPEG 108 (352)
T ss_pred HHHHHCCCCEEEEE-CCcHHHHH----HHHHHHHCCC-----cEEEEECCC
Confidence 34556787766554 57777766 6667778999 888776543
No 57
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=23.59 E-value=1.7e+02 Score=23.81 Aligned_cols=36 Identities=17% Similarity=0.363 Sum_probs=24.8
Q ss_pred CceEEEEEcccCccCCCCCCCCCCchhHHHHHHHHHHHHHHhhCCCcEEEEE
Q 026098 28 VKTGLVLVDVVNGFCTVGSGNLPDGQISEMVDESVRLARVFCEKKWPVFAFL 79 (243)
Q Consensus 28 ~~~ALlvID~QndF~~~~~g~l~~~~~~~iv~~i~~li~~~r~~g~pVv~~~ 79 (243)
.+.|++|||...+... ...+.+..++..+.|++.+.
T Consensus 94 ~D~ailvVda~~g~~~----------------~~~~~l~~~~~~~~p~ivvl 129 (188)
T PF00009_consen 94 ADIAILVVDANDGIQP----------------QTEEHLKILRELGIPIIVVL 129 (188)
T ss_dssp SSEEEEEEETTTBSTH----------------HHHHHHHHHHHTT-SEEEEE
T ss_pred cccceeeeeccccccc----------------ccccccccccccccceEEee
Confidence 4778999998866332 34667777888899976654
No 58
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=23.29 E-value=1.3e+02 Score=26.68 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=35.1
Q ss_pred CceEEEEEcccC-ccCCCCCCCCCCchhHHHHHHHHHHHHHHhhCCCcEEEEEe
Q 026098 28 VKTGLVLVDVVN-GFCTVGSGNLPDGQISEMVDESVRLARVFCEKKWPVFAFLD 80 (243)
Q Consensus 28 ~~~ALlvID~Qn-dF~~~~~g~l~~~~~~~iv~~i~~li~~~r~~g~pVv~~~d 80 (243)
.++.|++||.|- .|-.-+ .+ -++...+....+-+..+|..|.|||-...
T Consensus 64 krpIv~lVD~~sQa~grre--El--lGi~~alAhla~a~a~AR~~GHpvI~Lv~ 113 (234)
T PF06833_consen 64 KRPIVALVDVPSQAYGRRE--EL--LGINQALAHLAKAYALARLAGHPVIGLVY 113 (234)
T ss_pred CCCEEEEEeCCccccchHH--HH--hhHHHHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 488999999983 332210 11 25667777888889999999999997663
No 59
>PLN00011 cysteine synthase
Probab=23.24 E-value=3.2e+02 Score=24.72 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=26.5
Q ss_pred CCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCccc
Q 026098 149 IKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCAT 194 (243)
Q Consensus 149 i~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as 194 (243)
.++| |+....|.|.. .|.-|...|+ +++++.....+
T Consensus 69 ~~~v-v~aSsGN~g~a----lA~~a~~~G~-----~~~ivvp~~~~ 104 (323)
T PLN00011 69 KSTL-IEATAGNTGIG----LACIGAARGY-----KVILVMPSTMS 104 (323)
T ss_pred CcEE-EEeCCChHHHH----HHHHHHHcCC-----eEEEEeCCCCC
Confidence 4565 46788888876 7778888999 88877765543
No 60
>PRK09482 flap endonuclease-like protein; Provisional
Probab=22.99 E-value=79 Score=28.20 Aligned_cols=43 Identities=12% Similarity=0.033 Sum_probs=38.3
Q ss_pred hHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEec
Q 026098 139 VFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYS 189 (243)
Q Consensus 139 ~L~~~L~~~gi~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~ 189 (243)
.+.++|...|+..+..-|+..|-++- +-+..+.+.|+ +|++++
T Consensus 88 ~i~~~l~~~gi~~~~~~g~EADDvIa---tla~~~~~~~~-----~v~I~S 130 (256)
T PRK09482 88 AIRAAFEELGIDSWHADGNEADDLIA---TLAVKVAQAGH-----QATIVS 130 (256)
T ss_pred HHHHHHHhCCCCEeccCCcCHHHHHH---HHHHHHHHCCC-----eEEEEE
Confidence 56788888999999999999999998 88888889999 999886
No 61
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=21.21 E-value=2.6e+02 Score=23.54 Aligned_cols=48 Identities=21% Similarity=0.233 Sum_probs=30.3
Q ss_pred ceEEEEEcccCccCCCCCCCCCCchhHHHHHHHHHHHHHHhhCCCcEEEEE
Q 026098 29 KTGLVLVDVVNGFCTVGSGNLPDGQISEMVDESVRLARVFCEKKWPVFAFL 79 (243)
Q Consensus 29 ~~ALlvID~QndF~~~~~g~l~~~~~~~iv~~i~~li~~~r~~g~pVv~~~ 79 (243)
+.-+||||....+... .........+-.-+.+|-..+++.+++|+.+.
T Consensus 123 ~~~~vvID~l~~l~~~---~~~~~~~~~~~~~~~~L~~la~~~~~~ii~~~ 170 (242)
T cd00984 123 GLGLIVIDYLQLMSGS---KKKGNRQQEVAEISRSLKLLAKELNVPVIALS 170 (242)
T ss_pred CCCEEEEcCchhcCCC---CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEec
Confidence 4569999988876542 11112223333344566667788999999887
No 62
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=21.17 E-value=1.4e+02 Score=26.44 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=42.6
Q ss_pred CceEEEEEcccC-----ccCCCCC------CCCCCchhHHHHHHHHHHHHHHhh-CCCcEEEEEecCCCC
Q 026098 28 VKTGLVLVDVVN-----GFCTVGS------GNLPDGQISEMVDESVRLARVFCE-KKWPVFAFLDTHYPD 85 (243)
Q Consensus 28 ~~~ALlvID~Qn-----dF~~~~~------g~l~~~~~~~iv~~i~~li~~~r~-~g~pVv~~~d~h~~~ 85 (243)
.++.++-+|=|+ ||..+++ |+..++....-+...+++++.+.. .+.-+||+...|+.|
T Consensus 80 Pns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsD 149 (237)
T PF00837_consen 80 PNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSD 149 (237)
T ss_pred CCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCC
Confidence 577788888888 7876542 444556666777788888888876 456789999888754
No 63
>PRK06110 hypothetical protein; Provisional
Probab=20.54 E-value=2.9e+02 Score=24.96 Aligned_cols=34 Identities=9% Similarity=0.047 Sum_probs=25.8
Q ss_pred CEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCc
Q 026098 150 KNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGC 192 (243)
Q Consensus 150 ~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~ 192 (243)
..-+++.-..|.|.. .|.-+...|+ +++|+.+..
T Consensus 70 ~~~vv~aSsGN~g~a----lA~~a~~~G~-----~~~ivvp~~ 103 (322)
T PRK06110 70 VRGVISATRGNHGQS----VAFAARRHGL-----AATIVVPHG 103 (322)
T ss_pred CceEEEECCCHHHHH----HHHHHHHcCC-----CEEEEEcCC
Confidence 344788888888876 7888888999 888875554
No 64
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=20.33 E-value=5e+02 Score=23.05 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=36.7
Q ss_pred hHHHHHHhCCC----CEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCcccCCcc
Q 026098 139 VFVNWVKSNQI----KNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFP 198 (243)
Q Consensus 139 ~L~~~L~~~gi----~~lvi~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~v~V~~Da~as~~~~ 198 (243)
.+.+.++..+. .+++|-|+= + |-+ .+++-+.+.|. +|+-++|...++-.+
T Consensus 24 ~~~~~~~~~~~~l~g~~vaIqGfG-n--VG~--~~a~~L~e~Ga-----kvvaVsD~~G~i~~~ 77 (254)
T cd05313 24 FVEEMLKDRNETLKGKRVAISGSG-N--VAQ--YAAEKLLELGA-----KVVTLSDSKGYVYDP 77 (254)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCC-H--HHH--HHHHHHHHCCC-----EEEEEECCCceEECC
Confidence 34566666555 599999983 3 333 58999999999 999999977775544
No 65
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=20.14 E-value=5.9e+02 Score=22.82 Aligned_cols=31 Identities=16% Similarity=-0.072 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHhhCCCcEEEEEecCCC
Q 026098 54 ISEMVDESVRLARVFCEKKWPVFAFLDTHYP 84 (243)
Q Consensus 54 ~~~iv~~i~~li~~~r~~g~pVv~~~d~h~~ 84 (243)
-......+|..++.+.+.|..=|.+.|.|..
T Consensus 32 R~~mt~evnAaiega~~aGa~eVvV~DsHg~ 62 (265)
T PF04951_consen 32 RRLMTREVNAAIEGAFEAGATEVVVNDSHGS 62 (265)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEEEE-STT
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEecCCC
Confidence 3556778899999999999999999999975
Done!