BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026100
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C7T|A Chain A, Crystal Structure Of The Ecdysone Phosphate Phosphatase,
Eppase, From Bombix Mori In Complex With Tungstate
pdb|3C7T|B Chain B, Crystal Structure Of The Ecdysone Phosphate Phosphatase,
Eppase, From Bombix Mori In Complex With Tungstate
pdb|3C7T|C Chain C, Crystal Structure Of The Ecdysone Phosphate Phosphatase,
Eppase, From Bombix Mori In Complex With Tungstate
pdb|3C7T|D Chain D, Crystal Structure Of The Ecdysone Phosphate Phosphatase,
Eppase, From Bombix Mori In Complex With Tungstate
Length = 263
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 17 DAHLSPLGWQQVGNLRKRVEASGLTQKIDLVITSPLLRTLQTAVGVFGGDGESQTDGIDA 76
D L+ LGW Q + + + +G++ I V SP LR ++TA G G + I
Sbjct: 57 DTPLTRLGWFQAQLVGEGMRMAGVS--IKHVYASPALRCVETAQGFLDGLRADPSVKIKV 114
Query: 77 HPSLTATATVNCPPII----AVELCRERLGV 103
P L + P I +ELC+ L V
Sbjct: 115 EPGLFEFKNWHMPKGIDFMTPIELCKAGLNV 145
>pdb|4ES8|A Chain A, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P212121
pdb|4ES8|B Chain B, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P212121
pdb|4ES9|A Chain A, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P21
pdb|4ES9|B Chain B, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P21
pdb|4ES9|C Chain C, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P21
pdb|4ES9|D Chain D, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P21
Length = 320
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 181 LLNDCQTSPNQELCPRFTNCEIRSVVIVDQSIRGSCYPGTISGELRLPADVAKENIPREE 240
LL+ + P +L F N +I V Q +G Y G + +L L +D + N +E
Sbjct: 190 LLSKVEKKPQGDLDVEFKNLKIIDVTNPSQLDKGVAYVGNKNVQLTLKSDDGRTNFEGDE 249
Query: 241 VS 242
+S
Sbjct: 250 IS 251
>pdb|3RCY|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|G Chain G, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|H Chain H, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
Length = 433
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 13/62 (20%)
Query: 6 GPEALLS--QEFFDAHLSPLGWQQVGNLRKRVEASGLTQKIDLVITSPLLRTLQTAVGVF 63
GPEA+ + ++ F H+ + + + +RV +SG TQ+ DL TA+G F
Sbjct: 47 GPEAMRAVIEDVFARHMEGENPENIELMFRRVYSSGFTQRPDL-----------TAIGAF 95
Query: 64 GG 65
G
Sbjct: 96 SG 97
>pdb|2L82|A Chain A, Solution Nmr Structure Of De Novo Designed Protein, P-Loop
Ntpase Fold, Northeast Structural Genomics Consortium
Target Or32
Length = 162
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 107 DKRRSISEYHSLFPAIDFKLIESEDDKLWKADAREPFEEVTARGME 152
D R +I E +P +D +I + DDK W D EE RG+E
Sbjct: 63 DFRENIREIWERYPQLDVVVIVTTDDKEWIKDF---IEEAKERGVE 105
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 3 GNNGPEALLSQEFFDAHLSPLGWQQVGNLRKRVEASGLTQKIDLVITSPLLRTLQTAVGV 62
G G AL Q +D + + + RK+V G +ID++ T+ L
Sbjct: 12 GGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNY 71
Query: 63 F-GGDGESQTDGIDAHPSLTATA 84
F G+G I H S TATA
Sbjct: 72 FRSGEGFLLVFSITEHESFTATA 94
>pdb|3F2I|A Chain A, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|B Chain B, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|C Chain C, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|D Chain D, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|E Chain E, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|F Chain F, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422
Length = 172
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 40 LTQKIDLVITSPLLRTLQTA 59
L ++ DL++TSPL+R QTA
Sbjct: 43 LGRQFDLIVTSPLIRARQTA 62
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 3 GNNGPEALLSQEFFDAHLSPLGWQQVGNLRKRVEASGLTQKIDLVITSPLLRTLQTAVGV 62
G G AL Q +D + + + RK+V G +ID++ T+ L
Sbjct: 16 GGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNY 75
Query: 63 F-GGDGESQTDGIDAHPSLTATA 84
F G+G I H S TATA
Sbjct: 76 FRSGEGFLLVFSITEHESFTATA 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,106,944
Number of Sequences: 62578
Number of extensions: 266249
Number of successful extensions: 638
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 635
Number of HSP's gapped (non-prelim): 12
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)