Query 026102
Match_columns 243
No_of_seqs 202 out of 1299
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:47:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026102.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026102hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1718 Dual specificity phosp 99.8 1.1E-20 2.5E-25 156.7 8.0 68 7-74 90-157 (198)
2 KOG1716 Dual specificity phosp 99.8 4.9E-19 1.1E-23 159.8 9.5 71 10-80 154-224 (285)
3 PF00782 DSPc: Dual specificit 99.8 5.8E-19 1.3E-23 140.5 8.1 63 8-70 70-132 (133)
4 smart00195 DSPc Dual specifici 99.8 1.2E-18 2.6E-23 139.8 8.8 62 10-71 77-138 (138)
5 cd00127 DSPc Dual specificity 99.7 5.5E-17 1.2E-21 129.5 8.4 60 10-69 80-139 (139)
6 KOG1717 Dual specificity phosp 99.7 2.7E-17 5.9E-22 145.2 7.1 71 3-73 239-313 (343)
7 PRK12361 hypothetical protein; 99.5 2.5E-14 5.4E-19 139.5 9.5 69 4-72 164-237 (547)
8 PTZ00242 protein tyrosine phos 99.5 4.1E-14 9E-19 118.5 9.0 60 11-71 98-157 (166)
9 KOG1719 Dual specificity phosp 99.5 6.2E-14 1.3E-18 115.3 7.2 70 2-71 96-169 (183)
10 PTZ00393 protein tyrosine phos 99.5 1.5E-13 3.3E-18 120.7 9.4 65 8-74 167-231 (241)
11 COG2453 CDC14 Predicted protei 99.3 2.6E-12 5.6E-17 108.8 7.0 64 6-71 100-164 (180)
12 KOG1720 Protein tyrosine phosp 99.3 1.1E-11 2.3E-16 106.6 8.2 67 4-70 140-206 (225)
13 smart00012 PTPc_DSPc Protein t 98.8 4.5E-08 9.8E-13 73.4 8.3 55 11-65 39-99 (105)
14 smart00404 PTPc_motif Protein 98.8 4.5E-08 9.8E-13 73.4 8.3 55 11-65 39-99 (105)
15 COG5350 Predicted protein tyro 98.5 1.3E-07 2.8E-12 78.0 5.7 61 3-63 82-146 (172)
16 cd00047 PTPc Protein tyrosine 98.4 6.5E-07 1.4E-11 77.7 7.2 55 11-65 166-225 (231)
17 smart00194 PTPc Protein tyrosi 98.4 1.1E-06 2.3E-11 77.7 7.8 55 11-65 193-252 (258)
18 KOG2836 Protein tyrosine phosp 98.3 2.2E-06 4.7E-11 69.6 7.4 63 5-69 90-153 (173)
19 PRK15375 pathogenicity island 97.9 2.2E-05 4.7E-10 75.9 7.4 57 14-70 469-527 (535)
20 PHA02742 protein tyrosine phos 97.7 0.00013 2.8E-09 66.6 7.8 49 12-60 230-283 (303)
21 PF00102 Y_phosphatase: Protei 97.7 8.3E-05 1.8E-09 63.6 5.9 54 12-65 171-229 (235)
22 PHA02740 protein tyrosine phos 97.6 0.00017 3.8E-09 65.8 7.6 49 12-60 222-275 (298)
23 PHA02747 protein tyrosine phos 97.6 0.00018 3.9E-09 66.0 7.1 51 12-62 230-285 (312)
24 PHA02746 protein tyrosine phos 97.5 0.00028 6.1E-09 65.1 6.9 50 12-61 248-302 (323)
25 PHA02738 hypothetical protein; 97.4 0.00044 9.5E-09 63.7 7.2 51 12-62 228-283 (320)
26 TIGR01244 conserved hypothetic 97.4 0.0006 1.3E-08 55.1 6.7 50 4-55 78-128 (135)
27 PF03162 Y_phosphatase2: Tyros 97.0 0.0013 2.8E-08 55.1 5.4 39 11-50 91-129 (164)
28 KOG2283 Clathrin coat dissocia 96.9 0.00069 1.5E-08 64.9 3.2 59 13-71 109-173 (434)
29 KOG2386 mRNA capping enzyme, g 96.9 0.00056 1.2E-08 64.5 2.2 73 13-85 126-198 (393)
30 KOG0792 Protein tyrosine phosp 96.7 0.0024 5.2E-08 66.2 5.9 57 13-69 1065-1129(1144)
31 COG2365 Protein tyrosine/serin 96.4 0.01 2.3E-07 52.8 7.3 54 12-65 137-190 (249)
32 COG5599 PTP2 Protein tyrosine 96.2 0.0029 6.3E-08 56.8 2.3 48 11-58 218-279 (302)
33 KOG0789 Protein tyrosine phosp 96.2 0.01 2.2E-07 55.6 6.0 51 11-61 299-355 (415)
34 KOG0790 Protein tyrosine phosp 95.8 0.0051 1.1E-07 58.8 2.3 50 12-61 452-509 (600)
35 PF03226 Yippee-Mis18: Yippee 94.7 0.024 5.3E-07 42.9 2.5 19 132-150 2-20 (96)
36 KOG0791 Protein tyrosine phosp 94.7 0.063 1.4E-06 50.2 5.6 54 12-65 288-346 (374)
37 PF04179 Init_tRNA_PT: Initiat 94.4 0.18 3.9E-06 48.8 8.3 58 11-68 376-449 (451)
38 PLN02727 NAD kinase 93.4 0.097 2.1E-06 54.4 4.6 40 3-42 331-372 (986)
39 KOG4228 Protein tyrosine phosp 93.2 0.17 3.6E-06 53.2 5.9 70 3-72 714-800 (1087)
40 PF14671 DSPn: Dual specificit 91.0 0.31 6.8E-06 40.0 4.0 43 11-53 66-112 (141)
41 PF01641 SelR: SelR domain; I 85.9 0.61 1.3E-05 37.4 2.4 67 128-219 33-104 (124)
42 PRK05508 methionine sulfoxide 85.8 0.89 1.9E-05 36.2 3.2 25 128-152 29-53 (119)
43 PRK00222 methionine sulfoxide 82.9 1.5 3.3E-05 36.0 3.5 66 128-218 39-109 (142)
44 KOG4228 Protein tyrosine phosp 82.3 1.6 3.4E-05 46.2 4.2 48 11-58 1018-1070(1087)
45 COG3453 Uncharacterized protei 82.0 4.9 0.00011 32.3 6.0 45 4-50 79-124 (130)
46 KOG4471 Phosphatidylinositol 3 79.9 2.8 6.2E-05 41.8 4.8 31 5-35 367-399 (717)
47 TIGR00357 methionine-R-sulfoxi 79.2 2.1 4.6E-05 34.8 3.1 25 128-152 36-60 (134)
48 KOG0793 Protein tyrosine phosp 77.3 2.4 5.2E-05 43.2 3.5 46 13-58 929-980 (1004)
49 smart00714 LITAF Possible memb 74.8 1.4 3E-05 31.1 0.8 18 198-215 49-66 (67)
50 PF09814 HECT_2: HECT-like Ubi 73.3 4.8 0.0001 37.1 4.3 19 131-149 105-123 (354)
51 PF10571 UPF0547: Uncharacteri 71.8 2.7 5.8E-05 24.5 1.4 21 203-226 2-23 (26)
52 TIGR02300 FYDLN_acid conserved 69.9 3 6.6E-05 33.6 1.8 34 199-232 7-41 (129)
53 PF09538 FYDLN_acid: Protein o 69.3 3.1 6.6E-05 32.6 1.7 32 199-230 7-39 (108)
54 PF13453 zf-TFIIB: Transcripti 69.3 2.8 6.1E-05 26.7 1.3 22 203-224 1-26 (41)
55 PF10601 zf-LITAF-like: LITAF- 68.3 2.4 5.3E-05 30.3 0.9 18 198-215 55-72 (73)
56 PRK05550 bifunctional methioni 66.9 5.6 0.00012 36.3 3.1 25 128-152 32-56 (283)
57 smart00400 ZnF_CHCC zinc finge 65.6 8 0.00017 26.0 3.0 32 15-48 23-54 (55)
58 PF12773 DZR: Double zinc ribb 64.8 3.8 8.3E-05 26.8 1.2 32 199-230 10-42 (50)
59 PF11648 RIG-I_C-RD: C-termina 64.8 3.1 6.6E-05 33.2 0.9 20 130-149 2-21 (123)
60 PF03861 ANTAR: ANTAR domain; 64.5 11 0.00023 25.6 3.5 26 26-51 15-40 (56)
61 PF10122 Mu-like_Com: Mu-like 64.0 2.4 5.1E-05 28.8 0.1 18 132-149 4-21 (51)
62 KOG1572 Predicted protein tyro 62.4 13 0.00027 33.3 4.4 40 10-50 147-186 (249)
63 PF13248 zf-ribbon_3: zinc-rib 62.2 2.9 6.3E-05 24.1 0.3 13 199-211 14-26 (26)
64 PF13408 Zn_ribbon_recom: Reco 62.0 5.4 0.00012 26.6 1.6 22 198-219 2-23 (58)
65 cd01523 RHOD_Lact_B Member of 61.7 11 0.00023 27.8 3.4 31 6-39 56-86 (100)
66 TIGR02098 MJ0042_CXXC MJ0042 f 61.1 10 0.00022 23.4 2.6 13 199-211 23-35 (38)
67 cd01518 RHOD_YceA Member of th 59.3 13 0.00028 27.5 3.4 28 9-39 59-86 (101)
68 PLN02160 thiosulfate sulfurtra 58.8 11 0.00024 30.1 3.2 29 9-40 79-107 (136)
69 PF06602 Myotub-related: Myotu 58.5 10 0.00023 35.5 3.4 27 3-29 222-249 (353)
70 PRK14018 trifunctional thiored 57.7 10 0.00022 37.5 3.3 24 127-150 413-436 (521)
71 PF13717 zinc_ribbon_4: zinc-r 56.9 6.5 0.00014 24.5 1.2 11 201-211 2-12 (36)
72 KOG4487 Uncharacterized conser 56.2 5.7 0.00012 30.7 1.0 39 178-220 6-51 (110)
73 COG0607 PspE Rhodanese-related 56.2 11 0.00024 27.8 2.6 26 9-36 59-84 (110)
74 PF03604 DNA_RNApol_7kD: DNA d 55.5 7.7 0.00017 23.7 1.3 23 204-227 3-27 (32)
75 KOG1089 Myotubularin-related p 54.8 29 0.00062 34.8 5.8 33 3-35 335-369 (573)
76 PF13240 zinc_ribbon_2: zinc-r 54.4 5.9 0.00013 22.3 0.6 21 203-226 1-22 (23)
77 cd01533 4RHOD_Repeat_2 Member 54.0 18 0.0004 27.1 3.6 26 11-39 66-91 (109)
78 PF08996 zf-DNA_Pol: DNA Polym 53.0 4.7 0.0001 34.3 0.1 12 216-227 43-55 (188)
79 PHA02540 61 DNA primase; Provi 52.7 74 0.0016 29.8 8.0 37 13-52 53-90 (337)
80 COG4738 Predicted transcriptio 52.3 17 0.00037 28.9 3.1 21 20-40 23-43 (124)
81 COG0229 Conserved domain frequ 51.9 18 0.00039 29.6 3.3 23 128-150 38-60 (140)
82 PF07282 OrfB_Zn_ribbon: Putat 50.2 8.1 0.00018 27.0 1.0 24 203-226 30-55 (69)
83 PF03119 DNA_ligase_ZBD: NAD-d 49.9 6.5 0.00014 23.2 0.4 10 203-212 1-10 (28)
84 COG3809 Uncharacterized protei 49.6 8.5 0.00018 28.6 1.0 21 202-222 2-25 (88)
85 PF01807 zf-CHC2: CHC2 zinc fi 49.3 21 0.00045 27.0 3.2 37 15-53 54-90 (97)
86 PF11781 RRN7: RNA polymerase 49.1 8.6 0.00019 24.1 0.8 23 202-226 9-34 (36)
87 PF03966 Trm112p: Trm112p-like 48.8 8.9 0.00019 27.1 1.0 14 196-209 48-61 (68)
88 PF14471 DUF4428: Domain of un 47.9 4.1 8.8E-05 27.5 -0.8 32 204-235 2-38 (51)
89 cd01448 TST_Repeat_1 Thiosulfa 47.6 35 0.00077 25.9 4.3 28 11-40 79-106 (122)
90 TIGR03865 PQQ_CXXCW PQQ-depend 47.2 22 0.00048 29.3 3.3 29 10-40 115-143 (162)
91 smart00531 TFIIE Transcription 46.4 9.9 0.00021 31.0 1.0 16 199-214 121-136 (147)
92 PF09297 zf-NADH-PPase: NADH p 45.6 7.2 0.00016 23.4 0.1 10 203-212 5-14 (32)
93 TIGR00373 conserved hypothetic 45.3 11 0.00023 31.3 1.1 22 204-226 112-137 (158)
94 COG2093 DNA-directed RNA polym 44.9 10 0.00022 26.9 0.8 20 200-219 17-36 (64)
95 PF13719 zinc_ribbon_5: zinc-r 44.2 29 0.00062 21.6 2.7 13 198-210 22-34 (37)
96 KOG3399 Predicted Yippee-type 44.2 11 0.00024 30.1 1.0 24 130-153 13-36 (122)
97 TIGR01391 dnaG DNA primase, ca 43.8 74 0.0016 30.4 6.7 37 15-53 55-91 (415)
98 PRK00420 hypothetical protein; 43.6 14 0.0003 29.2 1.4 11 199-209 38-48 (112)
99 PRK08351 DNA-directed RNA poly 42.6 13 0.00028 26.2 1.0 17 203-219 17-33 (61)
100 smart00659 RPOLCX RNA polymera 42.6 13 0.00028 24.3 1.0 13 199-211 17-29 (44)
101 TIGR00354 polC DNA polymerase, 42.5 15 0.00033 38.9 1.8 34 198-232 1009-1043(1095)
102 PF12760 Zn_Tnp_IS1595: Transp 42.1 11 0.00025 24.4 0.6 13 197-210 15-27 (46)
103 cd01520 RHOD_YbbB Member of th 41.6 31 0.00068 26.8 3.2 30 8-39 83-112 (128)
104 PRK03681 hypA hydrogenase nick 41.6 25 0.00054 27.5 2.6 29 198-226 67-96 (114)
105 PF00096 zf-C2H2: Zinc finger, 41.0 6 0.00013 21.4 -0.7 19 133-151 1-19 (23)
106 cd01528 RHOD_2 Member of the R 39.8 57 0.0012 23.9 4.3 27 11-40 58-84 (101)
107 PRK00432 30S ribosomal protein 39.5 16 0.00034 24.5 1.0 7 203-209 22-28 (50)
108 cd01444 GlpE_ST GlpE sulfurtra 39.0 51 0.0011 23.6 3.9 32 5-39 50-81 (96)
109 PRK00398 rpoP DNA-directed RNA 38.9 16 0.00035 23.6 1.0 12 201-212 21-32 (46)
110 PRK01415 hypothetical protein; 38.8 31 0.00066 30.9 3.0 29 8-39 168-196 (247)
111 PRK12380 hydrogenase nickel in 38.7 30 0.00066 27.0 2.7 29 197-226 66-95 (113)
112 PRK06266 transcription initiat 38.6 16 0.00034 31.0 1.1 12 201-212 136-147 (178)
113 PF06750 DiS_P_DiS: Bacterial 38.4 24 0.00051 26.6 1.9 31 199-229 31-70 (92)
114 PRK14714 DNA polymerase II lar 37.7 25 0.00053 38.4 2.6 25 200-229 666-691 (1337)
115 PF08772 NOB1_Zn_bind: Nin one 36.8 14 0.0003 26.9 0.4 13 198-210 21-33 (73)
116 PRK12554 undecaprenyl pyrophos 36.8 35 0.00076 31.0 3.1 26 20-47 166-191 (276)
117 PF07295 DUF1451: Protein of u 36.3 26 0.00057 28.8 2.0 26 199-225 110-138 (146)
118 COG4416 Com Mu-like prophage p 36.2 8.5 0.00018 26.5 -0.7 16 132-147 4-19 (60)
119 KOG0856 Predicted pilin-like t 35.8 28 0.00061 28.6 2.1 25 129-153 51-75 (146)
120 PRK06835 DNA replication prote 35.7 20 0.00043 33.3 1.4 24 199-225 96-119 (329)
121 PRK14714 DNA polymerase II lar 35.4 22 0.00047 38.8 1.8 9 133-141 668-676 (1337)
122 COG1933 Archaeal DNA polymeras 35.2 18 0.0004 32.3 1.0 39 197-238 163-202 (253)
123 PRK00142 putative rhodanese-re 34.9 39 0.00084 31.1 3.2 27 10-39 170-196 (314)
124 cd01522 RHOD_1 Member of the R 34.9 57 0.0012 24.9 3.7 28 9-39 62-89 (117)
125 PRK04023 DNA polymerase II lar 34.7 23 0.00049 37.8 1.7 32 199-231 1035-1067(1121)
126 TIGR00100 hypA hydrogenase nic 34.3 31 0.00067 27.0 2.1 28 198-226 67-95 (115)
127 COG1645 Uncharacterized Zn-fin 33.9 22 0.00048 28.8 1.2 13 198-210 41-53 (131)
128 COG3707 AmiR Response regulato 33.8 41 0.00088 29.1 2.9 22 30-51 151-172 (194)
129 COG5629 Predicted metal-bindin 33.5 21 0.00047 32.4 1.2 36 198-233 166-211 (321)
130 COG2888 Predicted Zn-ribbon RN 33.4 11 0.00024 26.5 -0.5 12 130-141 36-47 (61)
131 cd01526 RHOD_ThiF Member of th 32.8 52 0.0011 25.2 3.2 28 9-39 70-97 (122)
132 PF02673 BacA: Bacitracin resi 32.1 51 0.0011 29.6 3.4 26 20-47 160-185 (259)
133 cd01519 RHOD_HSP67B2 Member of 31.4 53 0.0011 24.0 2.9 27 10-39 65-91 (106)
134 COG0143 MetG Methionyl-tRNA sy 30.9 26 0.00056 35.0 1.4 26 201-230 142-168 (558)
135 PF09082 DUF1922: Domain of un 30.7 22 0.00047 25.6 0.6 19 132-151 3-21 (68)
136 KOG4784 Uncharacterized conser 30.7 40 0.00088 31.6 2.5 87 128-217 99-200 (348)
137 COG1675 TFA1 Transcription ini 30.3 28 0.0006 29.6 1.3 12 131-142 60-71 (176)
138 PF07754 DUF1610: Domain of un 30.0 31 0.00066 19.8 1.0 10 199-208 14-23 (24)
139 cd01529 4RHOD_Repeats Member o 30.0 57 0.0012 23.7 2.8 28 9-39 54-81 (96)
140 COG1571 Predicted DNA-binding 29.7 29 0.00062 33.5 1.4 44 182-227 333-377 (421)
141 PRK11032 hypothetical protein; 29.7 39 0.00084 28.3 2.0 26 199-225 122-150 (160)
142 PRK00281 undecaprenyl pyrophos 29.3 58 0.0013 29.4 3.3 26 20-47 164-189 (268)
143 PF13912 zf-C2H2_6: C2H2-type 29.2 12 0.00027 20.9 -0.7 21 132-152 1-21 (27)
144 PRK11827 hypothetical protein; 29.1 31 0.00067 24.2 1.1 15 200-215 7-21 (60)
145 COG3091 SprT Zn-dependent meta 29.0 24 0.00051 29.4 0.6 12 132-143 140-151 (156)
146 TIGR00853 pts-lac PTS system, 28.9 45 0.00096 25.1 2.1 13 11-23 3-15 (95)
147 PF14205 Cys_rich_KTR: Cystein 28.8 32 0.00069 23.7 1.1 10 201-210 4-13 (55)
148 PHA02325 hypothetical protein 28.7 29 0.00062 24.8 0.9 17 203-219 5-23 (72)
149 TIGR00753 undec_PP_bacA undeca 28.7 59 0.0013 29.1 3.2 26 20-47 160-185 (255)
150 cd01534 4RHOD_Repeat_3 Member 28.7 76 0.0016 23.0 3.3 26 11-39 56-81 (95)
151 PF13790 DUF4182: Domain of un 28.3 32 0.00068 22.0 1.0 18 199-216 1-18 (38)
152 PF08271 TF_Zn_Ribbon: TFIIB z 27.9 29 0.00063 22.1 0.8 17 198-214 16-32 (43)
153 PF02943 FeThRed_B: Ferredoxin 27.8 10 0.00022 29.7 -1.7 29 200-231 62-91 (108)
154 COG3478 Predicted nucleic-acid 27.7 29 0.00064 24.8 0.8 11 200-210 3-13 (68)
155 PRK05667 dnaG DNA primase; Val 27.7 2.3E+02 0.0049 28.5 7.4 42 14-57 56-97 (580)
156 cd01532 4RHOD_Repeat_1 Member 27.5 91 0.002 22.5 3.6 28 11-39 50-77 (92)
157 PRK05772 translation initiatio 27.4 54 0.0012 31.0 2.8 17 5-21 161-177 (363)
158 PRK14890 putative Zn-ribbon RN 26.7 19 0.00041 25.2 -0.2 12 130-141 34-45 (59)
159 PRK14715 DNA polymerase II lar 26.5 39 0.00084 37.3 1.8 32 198-231 1539-1571(1627)
160 smart00355 ZnF_C2H2 zinc finge 26.1 13 0.00028 19.7 -1.0 20 133-152 1-20 (26)
161 cd01447 Polysulfide_ST Polysul 26.0 65 0.0014 23.3 2.5 28 9-39 59-86 (103)
162 PF13894 zf-C2H2_4: C2H2-type 26.0 14 0.00031 19.4 -0.8 19 133-151 1-19 (24)
163 PF09151 DUF1936: Domain of un 25.9 35 0.00076 20.9 0.8 10 202-211 2-11 (36)
164 TIGR00512 salvage_mtnA S-methy 25.6 89 0.0019 29.2 3.9 17 5-21 137-157 (331)
165 PRK05320 rhodanese superfamily 25.5 69 0.0015 28.6 3.0 24 10-35 174-197 (257)
166 COG3677 Transposase and inacti 25.4 40 0.00086 27.1 1.3 31 196-226 25-62 (129)
167 PF13695 zf-3CxxC: Zinc-bindin 25.4 73 0.0016 24.1 2.7 35 198-232 2-53 (98)
168 PF02591 DUF164: Putative zinc 25.2 43 0.00094 22.5 1.3 33 176-210 22-55 (56)
169 PF14803 Nudix_N_2: Nudix N-te 24.9 30 0.00066 21.4 0.4 9 203-211 2-10 (34)
170 PF13720 Acetyltransf_11: Udp 24.9 2.8E+02 0.0061 20.2 5.8 35 20-54 26-63 (83)
171 PF06677 Auto_anti-p27: Sjogre 24.8 41 0.00089 21.7 1.1 10 199-208 32-41 (41)
172 PF03811 Zn_Tnp_IS1: InsA N-te 24.4 43 0.00093 20.9 1.1 12 128-139 25-36 (36)
173 PF10272 Tmpp129: Putative tra 24.2 35 0.00076 32.2 0.9 36 175-210 302-349 (358)
174 PHA03338 US22 family homolog; 23.8 1.1E+02 0.0023 28.3 3.9 50 4-53 147-199 (344)
175 KOG1088 Uncharacterized conser 23.7 43 0.00092 26.7 1.2 15 196-210 93-107 (124)
176 cd01530 Cdc25 Cdc25 phosphatas 23.7 59 0.0013 25.2 2.0 25 9-35 66-91 (121)
177 TIGR02094 more_P_ylases alpha- 23.3 1.2E+02 0.0025 30.7 4.4 36 12-50 161-199 (601)
178 PRK00564 hypA hydrogenase nick 22.7 65 0.0014 25.3 2.1 28 198-226 68-97 (117)
179 PF00581 Rhodanese: Rhodanese- 22.7 1.1E+02 0.0023 22.1 3.2 29 11-39 67-97 (113)
180 COG0735 Fur Fe2+/Zn2+ uptake r 22.6 3.8E+02 0.0082 21.6 6.6 50 23-73 20-70 (145)
181 PRK06393 rpoE DNA-directed RNA 22.5 42 0.00091 23.9 0.8 17 203-219 19-35 (64)
182 PRK04860 hypothetical protein; 22.5 46 0.001 27.7 1.2 18 130-147 141-158 (160)
183 PRK06036 translation initiatio 22.4 93 0.002 29.1 3.3 22 5-26 142-163 (339)
184 COG1996 RPC10 DNA-directed RNA 22.4 43 0.00093 22.6 0.8 13 130-142 4-16 (49)
185 cd01521 RHOD_PspE2 Member of t 22.3 1E+02 0.0022 23.1 3.0 30 8-39 61-91 (110)
186 TIGR02981 phageshock_pspE phag 22.2 1.1E+02 0.0024 23.1 3.2 26 11-39 58-83 (101)
187 PRK03824 hypA hydrogenase nick 22.2 69 0.0015 25.8 2.2 10 199-208 68-77 (135)
188 PF14698 ASL_C2: Argininosucci 21.9 1.7E+02 0.0037 20.7 3.9 25 26-51 4-28 (70)
189 PF07975 C1_4: TFIIH C1-like d 21.7 33 0.00072 23.2 0.2 25 130-154 19-43 (51)
190 PRK00241 nudC NADH pyrophospha 21.6 44 0.00094 29.8 1.0 34 196-229 94-129 (256)
191 PF14599 zinc_ribbon_6: Zinc-r 21.6 38 0.00083 23.8 0.5 31 198-228 27-59 (61)
192 PF06044 DRP: Dam-replacing fa 21.5 22 0.00048 31.8 -0.9 22 195-216 25-47 (254)
193 PF04606 Ogr_Delta: Ogr/Delta- 21.5 40 0.00087 22.0 0.5 9 203-211 1-9 (47)
194 KOG2691 RNA polymerase II subu 21.4 1.2E+02 0.0025 23.9 3.1 27 127-153 21-47 (113)
195 PF03853 YjeF_N: YjeF-related 20.8 49 0.0011 27.3 1.1 64 9-77 23-86 (169)
196 smart00109 C1 Protein kinase C 20.3 57 0.0012 20.3 1.1 25 202-227 12-37 (49)
197 PF12921 ATP13: Mitochondrial 20.2 1.8E+02 0.0038 23.1 4.1 43 27-73 57-102 (126)
198 PF06174 DUF987: Protein of un 20.2 43 0.00092 23.7 0.5 11 212-222 27-37 (66)
199 PHA00626 hypothetical protein 20.0 42 0.00091 23.3 0.4 26 203-228 2-34 (59)
No 1
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.83 E-value=1.1e-20 Score=156.66 Aligned_cols=68 Identities=24% Similarity=0.280 Sum_probs=63.6
Q ss_pred HHHcCCcEEEEeCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCC
Q 026102 7 LIGEERRGVFWFIALQECPGAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGFK 74 (243)
Q Consensus 7 ~i~~~~~VLVHC~~G~sRS~avv~AyLm~~~~~~~~~A~~~vr~~rp~~~pn~~f~~qL~~~~~~~~~ 74 (243)
.+.++|++||||.||+|||+++++||||+..++++.||+.++|++||.++||.||++||..||...+.
T Consensus 90 v~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g 157 (198)
T KOG1718|consen 90 VIMRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFG 157 (198)
T ss_pred HHhcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcC
Confidence 34457899999999999999999999999999999999999999999999999999999999997654
No 2
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.78 E-value=4.9e-19 Score=159.83 Aligned_cols=71 Identities=30% Similarity=0.312 Sum_probs=65.8
Q ss_pred cCCcEEEEeCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCCCCCCCH
Q 026102 10 EERRGVFWFIALQECPGAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGFKVNRGSP 80 (243)
Q Consensus 10 ~~~~VLVHC~~G~sRS~avv~AyLm~~~~~~~~~A~~~vr~~rp~~~pn~~f~~qL~~~~~~~~~~~~~~~ 80 (243)
.+++|||||.+|+|||+++++||||+.+++++++|+++|+++||.+.||.||+.||..|++++........
T Consensus 154 ~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~~~~ 224 (285)
T KOG1716|consen 154 KGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSPSQG 224 (285)
T ss_pred CCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCcccc
Confidence 35799999999999999999999999999999999999999999999999999999999999877665543
No 3
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.78 E-value=5.8e-19 Score=140.51 Aligned_cols=63 Identities=32% Similarity=0.442 Sum_probs=60.1
Q ss_pred HHcCCcEEEEeCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 026102 8 IGEERRGVFWFIALQECPGAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEE 70 (243)
Q Consensus 8 i~~~~~VLVHC~~G~sRS~avv~AyLm~~~~~~~~~A~~~vr~~rp~~~pn~~f~~qL~~~~~ 70 (243)
+.++++|||||.+|+|||+++++||||...++++++|+++|+++||.+.||++|++||..||+
T Consensus 70 ~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 70 ISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEK 132 (133)
T ss_dssp HHTTSEEEEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHH
T ss_pred hcccceeEEEeCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhc
Confidence 445679999999999999999999999999999999999999999999999999999999986
No 4
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.77 E-value=1.2e-18 Score=139.78 Aligned_cols=62 Identities=27% Similarity=0.358 Sum_probs=59.5
Q ss_pred cCCcEEEEeCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 026102 10 EERRGVFWFIALQECPGAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEM 71 (243)
Q Consensus 10 ~~~~VLVHC~~G~sRS~avv~AyLm~~~~~~~~~A~~~vr~~rp~~~pn~~f~~qL~~~~~~ 71 (243)
++++|||||.+|+|||+++++||||+..++++++|+++|+++||.+.||++|++||..||++
T Consensus 77 ~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 77 KGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred CCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 45799999999999999999999999999999999999999999999999999999999974
No 5
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.70 E-value=5.5e-17 Score=129.51 Aligned_cols=60 Identities=30% Similarity=0.433 Sum_probs=57.9
Q ss_pred cCCcEEEEeCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 026102 10 EERRGVFWFIALQECPGAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFE 69 (243)
Q Consensus 10 ~~~~VLVHC~~G~sRS~avv~AyLm~~~~~~~~~A~~~vr~~rp~~~pn~~f~~qL~~~~ 69 (243)
++++|||||.+|.|||+++++||||+..++++++|+++||+.||.+.||++|++||..||
T Consensus 80 ~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 80 KGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred cCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 467999999999999999999999999999999999999999999999999999999986
No 6
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.69 E-value=2.7e-17 Score=145.17 Aligned_cols=71 Identities=28% Similarity=0.293 Sum_probs=66.5
Q ss_pred HHHHHHHcCC----cEEEEeCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCC
Q 026102 3 VLISLIGEER----RGVFWFIALQECPGAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGF 73 (243)
Q Consensus 3 ~~i~~i~~~~----~VLVHC~~G~sRS~avv~AyLm~~~~~~~~~A~~~vr~~rp~~~pn~~f~~qL~~~~~~~~ 73 (243)
++|+||++.+ .|||||.+|+|||+||++||||++..+++.+|+++|+.++..|.||-+||-||..||++..
T Consensus 239 EAIsfIdeArsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlg 313 (343)
T KOG1717|consen 239 EAISFIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLG 313 (343)
T ss_pred HHHHHHHHhhccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhh
Confidence 4688888764 7999999999999999999999999999999999999999999999999999999999864
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.53 E-value=2.5e-14 Score=139.53 Aligned_cols=69 Identities=22% Similarity=0.243 Sum_probs=62.7
Q ss_pred HHHHHH----cCCcEEEEeCCCCchhHHHHHHHHHHh-CCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcC
Q 026102 4 LISLIG----EERRGVFWFIALQECPGAIITAYLMRT-EQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMG 72 (243)
Q Consensus 4 ~i~~i~----~~~~VLVHC~~G~sRS~avv~AyLm~~-~~~~~~~A~~~vr~~rp~~~pn~~f~~qL~~~~~~~ 72 (243)
+++||+ ++++|||||.+|+|||+++++||||.+ .++++++|+++||++||.+.||++++++|+.|++.+
T Consensus 164 a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~ 237 (547)
T PRK12361 164 AINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQG 237 (547)
T ss_pred HHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcC
Confidence 455655 467999999999999999999999976 589999999999999999999999999999999876
No 8
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.52 E-value=4.1e-14 Score=118.50 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=56.0
Q ss_pred CCcEEEEeCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 026102 11 ERRGVFWFIALQECPGAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEM 71 (243)
Q Consensus 11 ~~~VLVHC~~G~sRS~avv~AyLm~~~~~~~~~A~~~vr~~rp~~~pn~~f~~qL~~~~~~ 71 (243)
+++|+|||.+|+|||++++++|||...++++++|+.+|+++||.+ ++.+++.+|..|++.
T Consensus 98 g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~-i~~~Q~~~l~~~~~~ 157 (166)
T PTZ00242 98 PETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGA-INQTQLQFLKKYKPR 157 (166)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCC-chHHHHHHHHHHHHH
Confidence 778999999999999999999999998999999999999999986 479999999999864
No 9
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.49 E-value=6.2e-14 Score=115.26 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=64.9
Q ss_pred HHHHHHHHcC----CcEEEEeCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 026102 2 YVLISLIGEE----RRGVFWFIALQECPGAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEM 71 (243)
Q Consensus 2 ~~~i~~i~~~----~~VLVHC~~G~sRS~avv~AyLm~~~~~~~~~A~~~vr~~rp~~~pn~~f~~qL~~~~~~ 71 (243)
...++||.+. +.|+|||.||.+||++++++|||...+|++++|+++||+.||.+-..++.+..|.+|...
T Consensus 96 ~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~ 169 (183)
T KOG1719|consen 96 QKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQ 169 (183)
T ss_pred HHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHH
Confidence 4567888875 489999999999999999999999999999999999999999999999999999999875
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.48 E-value=1.5e-13 Score=120.71 Aligned_cols=65 Identities=17% Similarity=0.130 Sum_probs=58.7
Q ss_pred HHcCCcEEEEeCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCC
Q 026102 8 IGEERRGVFWFIALQECPGAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGFK 74 (243)
Q Consensus 8 i~~~~~VLVHC~~G~sRS~avv~AyLm~~~~~~~~~A~~~vr~~rp~~~pn~~f~~qL~~~~~~~~~ 74 (243)
+..++.|+|||.+|+|||++++++|||. .|+++++|+++||++||.+ +|..+++.|+.|++...+
T Consensus 167 l~~g~~VaVHC~AGlGRTGtl~AayLI~-~GmspeeAI~~VR~~RPgA-In~~Q~~fL~~y~~~~~k 231 (241)
T PTZ00393 167 IKNNRAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDRRKGA-INKRQLQFLKAYKKKKKK 231 (241)
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhccc
Confidence 3457789999999999999999999998 6999999999999999988 589999999999987543
No 11
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.33 E-value=2.6e-12 Score=108.77 Aligned_cols=64 Identities=19% Similarity=0.181 Sum_probs=47.0
Q ss_pred HHHHcCCcEEEEeCCCCchhHHHHHHHHHHhCCC-CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 026102 6 SLIGEERRGVFWFIALQECPGAIITAYLMRTEQL-SSEGALESLRQSCESVCPNDGFLEQLKMFEEM 71 (243)
Q Consensus 6 ~~i~~~~~VLVHC~~G~sRS~avv~AyLm~~~~~-~~~~A~~~vr~~rp~~~pn~~f~~qL~~~~~~ 71 (243)
+++.++++|||||++|+|||++|++||||.+.+. ..++|+..++.+||. ++....+++..++..
T Consensus 100 ~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r~~--~v~~~~q~~~~~e~~ 164 (180)
T COG2453 100 EALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRPG--AVVTEIQHLFELEQE 164 (180)
T ss_pred HHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCc--ccccHHHHHHHHHHH
Confidence 3334456999999999999999999999999665 567777777777776 555555555444443
No 12
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.28 E-value=1.1e-11 Score=106.58 Aligned_cols=67 Identities=15% Similarity=0.102 Sum_probs=58.0
Q ss_pred HHHHHHcCCcEEEEeCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 026102 4 LISLIGEERRGVFWFIALQECPGAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEE 70 (243)
Q Consensus 4 ~i~~i~~~~~VLVHC~~G~sRS~avv~AyLm~~~~~~~~~A~~~vr~~rp~~~pn~~f~~qL~~~~~ 70 (243)
++++..+++.|.|||.+|.+|++++++||||+.++++..||++.||..||.+...+....-|..|..
T Consensus 140 i~e~~~~~g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 140 IVENAEKGGKIAVHCKAGLGRTGTLIACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred HHHHHHhcCeEEEEeccCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 4555666789999999999999999999999999999999999999999998888777666655544
No 13
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.76 E-value=4.5e-08 Score=73.38 Aligned_cols=55 Identities=11% Similarity=0.024 Sum_probs=46.3
Q ss_pred CCcEEEEeCCCCchhHHHHHHHHHHhC------CCCHHHHHHHHHHhCCCCCCCHHHHHHH
Q 026102 11 ERRGVFWFIALQECPGAIITAYLMRTE------QLSSEGALESLRQSCESVCPNDGFLEQL 65 (243)
Q Consensus 11 ~~~VLVHC~~G~sRS~avv~AyLm~~~------~~~~~~A~~~vr~~rp~~~pn~~f~~qL 65 (243)
+++|+|||.+|+|||++++++|++... ..++.+++..+|..||....+.....-+
T Consensus 39 ~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~r~~~~~~~~q~~~~ 99 (105)
T smart00012 39 SGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQRPGMVQTFEQYLFL 99 (105)
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhhhhhCCcHHHHHHH
Confidence 569999999999999999999998763 3688999999999999888776555443
No 14
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.76 E-value=4.5e-08 Score=73.38 Aligned_cols=55 Identities=11% Similarity=0.024 Sum_probs=46.3
Q ss_pred CCcEEEEeCCCCchhHHHHHHHHHHhC------CCCHHHHHHHHHHhCCCCCCCHHHHHHH
Q 026102 11 ERRGVFWFIALQECPGAIITAYLMRTE------QLSSEGALESLRQSCESVCPNDGFLEQL 65 (243)
Q Consensus 11 ~~~VLVHC~~G~sRS~avv~AyLm~~~------~~~~~~A~~~vr~~rp~~~pn~~f~~qL 65 (243)
+++|+|||.+|+|||++++++|++... ..++.+++..+|..||....+.....-+
T Consensus 39 ~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~r~~~~~~~~q~~~~ 99 (105)
T smart00404 39 SGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQRPGMVQTFEQYLFL 99 (105)
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhhhhhCCcHHHHHHH
Confidence 569999999999999999999998763 3688999999999999888776555443
No 15
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.55 E-value=1.3e-07 Score=77.98 Aligned_cols=61 Identities=18% Similarity=0.113 Sum_probs=50.0
Q ss_pred HHHHHHHcC---CcEEEEeCCCCchhHHHH-HHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHH
Q 026102 3 VLISLIGEE---RRGVFWFIALQECPGAII-TAYLMRTEQLSSEGALESLRQSCESVCPNDGFLE 63 (243)
Q Consensus 3 ~~i~~i~~~---~~VLVHC~~G~sRS~avv-~AyLm~~~~~~~~~A~~~vr~~rp~~~pn~~f~~ 63 (243)
.+++|+++- ...||||.+|+|||+|++ +|-|.-...++..+..+.++..+|.+.||+..+.
T Consensus 82 ~i~DF~~~wp~~apllIHC~aGISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~Rlia 146 (172)
T COG5350 82 AIIDFADEWPRFAPLLIHCYAGISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIA 146 (172)
T ss_pred HHHHHHhcCccccceeeeeccccccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHH
Confidence 456777664 579999999999997765 3445667789999999999999999999998764
No 16
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.41 E-value=6.5e-07 Score=77.65 Aligned_cols=55 Identities=13% Similarity=0.033 Sum_probs=46.3
Q ss_pred CCcEEEEeCCCCchhHHHHHHHHHHhC-----CCCHHHHHHHHHHhCCCCCCCHHHHHHH
Q 026102 11 ERRGVFWFIALQECPGAIITAYLMRTE-----QLSSEGALESLRQSCESVCPNDGFLEQL 65 (243)
Q Consensus 11 ~~~VLVHC~~G~sRS~avv~AyLm~~~-----~~~~~~A~~~vr~~rp~~~pn~~f~~qL 65 (243)
.++|+|||.+|+|||+++++++++... ..++.+|+..||+.||.+..+.....-+
T Consensus 166 ~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~~v~~~~Qy~f~ 225 (231)
T cd00047 166 SGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQTEEQYIFL 225 (231)
T ss_pred CCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 468999999999999999999976543 5899999999999999888886554433
No 17
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.38 E-value=1.1e-06 Score=77.74 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=46.7
Q ss_pred CCcEEEEeCCCCchhHHHHHHHHHHh-----CCCCHHHHHHHHHHhCCCCCCCHHHHHHH
Q 026102 11 ERRGVFWFIALQECPGAIITAYLMRT-----EQLSSEGALESLRQSCESVCPNDGFLEQL 65 (243)
Q Consensus 11 ~~~VLVHC~~G~sRS~avv~AyLm~~-----~~~~~~~A~~~vr~~rp~~~pn~~f~~qL 65 (243)
.++|+|||.+|+|||+++++++++.. ...++.+++..||+.||.+..+..+..-+
T Consensus 193 ~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~~~Qy~f~ 252 (258)
T smart00194 193 TGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQTEEQYIFL 252 (258)
T ss_pred CCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 46899999999999999999987742 35799999999999999998887665443
No 18
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=98.31 E-value=2.2e-06 Score=69.57 Aligned_cols=63 Identities=17% Similarity=0.136 Sum_probs=48.6
Q ss_pred HHHHHcCC-cEEEEeCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 026102 5 ISLIGEER-RGVFWFIALQECPGAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFE 69 (243)
Q Consensus 5 i~~i~~~~-~VLVHC~~G~sRS~avv~AyLm~~~~~~~~~A~~~vr~~rp~~~pn~~f~~qL~~~~ 69 (243)
.+|-+.-+ .|-|||.||++|.+.+|+.-|+.. ||.+++|+++||++|..+ .|...+..|+.|.
T Consensus 90 ~~f~e~p~~cvavhcvaglgrapvlvalalie~-gmkyedave~ir~krrga-~n~kql~~lekyr 153 (173)
T KOG2836|consen 90 TKFREEPGCCVAVHCVAGLGRAPVLVALALIEA-GMKYEDAVEMIRQKRRGA-INSKQLLYLEKYR 153 (173)
T ss_pred HHHhhCCCCeEEEEeecccCcchHHHHHHHHHc-cccHHHHHHHHHHHhhcc-ccHHHHHHHHHhC
Confidence 44544433 688999999999999888777766 999999999999999754 5666555565553
No 19
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=97.95 E-value=2.2e-05 Score=75.92 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=50.2
Q ss_pred EEEEeCCCCchhHHHHHHHHHHhCC-CCHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHH
Q 026102 14 GVFWFIALQECPGAIITAYLMRTEQ-LSSEGALESLRQSCES-VCPNDGFLEQLKMFEE 70 (243)
Q Consensus 14 VLVHC~~G~sRS~avv~AyLm~~~~-~~~~~A~~~vr~~rp~-~~pn~~f~~qL~~~~~ 70 (243)
.+|||.||+|||++++++|+|+..+ .++++.+..+|..|+. +.-+..++..|...+.
T Consensus 469 PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qRng~MVQt~eQy~~l~~~~~ 527 (535)
T PRK15375 469 PMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSRNNRMLEDASQFVQLKAMQA 527 (535)
T ss_pred ceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcCCccccccHHHHHHHHHHHH
Confidence 5899999999999999999998655 5899999999999997 8888888888876654
No 20
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=97.69 E-value=0.00013 Score=66.62 Aligned_cols=49 Identities=10% Similarity=-0.018 Sum_probs=40.2
Q ss_pred CcEEEEeCCCCchhHHHHHHHHHH-----hCCCCHHHHHHHHHHhCCCCCCCHH
Q 026102 12 RRGVFWFIALQECPGAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDG 60 (243)
Q Consensus 12 ~~VLVHC~~G~sRS~avv~AyLm~-----~~~~~~~~A~~~vr~~rp~~~pn~~ 60 (243)
++|+|||.+|+|||+++++...+. ....++.+++..||+.|+.+..+..
T Consensus 230 ~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~ 283 (303)
T PHA02742 230 PPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQ 283 (303)
T ss_pred CCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHH
Confidence 589999999999999988766543 2246888999999999998877754
No 21
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=97.68 E-value=8.3e-05 Score=63.57 Aligned_cols=54 Identities=9% Similarity=-0.040 Sum_probs=45.3
Q ss_pred CcEEEEeCCCCchhHHHHHHHHHHh-----CCCCHHHHHHHHHHhCCCCCCCHHHHHHH
Q 026102 12 RRGVFWFIALQECPGAIITAYLMRT-----EQLSSEGALESLRQSCESVCPNDGFLEQL 65 (243)
Q Consensus 12 ~~VLVHC~~G~sRS~avv~AyLm~~-----~~~~~~~A~~~vr~~rp~~~pn~~f~~qL 65 (243)
++++|||..|++||++++++.+|.. ...++.+++..||+.||.+..+.....-+
T Consensus 171 ~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~~qy~f~ 229 (235)
T PF00102_consen 171 GPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSPEQYRFC 229 (235)
T ss_dssp SEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSHHHHHHH
T ss_pred cceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCCHHHHHHH
Confidence 5899999999999999998887742 24799999999999999998887655443
No 22
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=97.63 E-value=0.00017 Score=65.81 Aligned_cols=49 Identities=16% Similarity=-0.019 Sum_probs=40.5
Q ss_pred CcEEEEeCCCCchhHHHHHHHHHH-----hCCCCHHHHHHHHHHhCCCCCCCHH
Q 026102 12 RRGVFWFIALQECPGAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDG 60 (243)
Q Consensus 12 ~~VLVHC~~G~sRS~avv~AyLm~-----~~~~~~~~A~~~vr~~rp~~~pn~~ 60 (243)
++|+|||.+|+|||+++++..++. ....++.+++..+|+.|+.+..+..
T Consensus 222 ~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~ 275 (298)
T PHA02740 222 APIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLD 275 (298)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHH
Confidence 589999999999999988665443 3347899999999999998877754
No 23
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=97.58 E-value=0.00018 Score=66.03 Aligned_cols=51 Identities=10% Similarity=-0.085 Sum_probs=41.8
Q ss_pred CcEEEEeCCCCchhHHHHHHHHHH-----hCCCCHHHHHHHHHHhCCCCCCCHHHH
Q 026102 12 RRGVFWFIALQECPGAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDGFL 62 (243)
Q Consensus 12 ~~VLVHC~~G~sRS~avv~AyLm~-----~~~~~~~~A~~~vr~~rp~~~pn~~f~ 62 (243)
++|+|||.+|+|||+++++..++. ....+..+++..+|+.|+.+..+....
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY 285 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDY 285 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHH
Confidence 589999999999999998776432 335789999999999999988875433
No 24
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=97.48 E-value=0.00028 Score=65.07 Aligned_cols=50 Identities=10% Similarity=-0.115 Sum_probs=41.0
Q ss_pred CcEEEEeCCCCchhHHHHHHHHHH-----hCCCCHHHHHHHHHHhCCCCCCCHHH
Q 026102 12 RRGVFWFIALQECPGAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDGF 61 (243)
Q Consensus 12 ~~VLVHC~~G~sRS~avv~AyLm~-----~~~~~~~~A~~~vr~~rp~~~pn~~f 61 (243)
++|+|||.+|+|||+++++..++. ....++.+++..+|..|+.+..+...
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~Q 302 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQ 302 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHH
Confidence 589999999999999998765432 33478999999999999988877543
No 25
>PHA02738 hypothetical protein; Provisional
Probab=97.41 E-value=0.00044 Score=63.71 Aligned_cols=51 Identities=10% Similarity=-0.201 Sum_probs=40.3
Q ss_pred CcEEEEeCCCCchhHHHHHHHHHH-----hCCCCHHHHHHHHHHhCCCCCCCHHHH
Q 026102 12 RRGVFWFIALQECPGAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDGFL 62 (243)
Q Consensus 12 ~~VLVHC~~G~sRS~avv~AyLm~-----~~~~~~~~A~~~vr~~rp~~~pn~~f~ 62 (243)
++|+|||.+|+|||+++++.-++. ....++.+++..||+.|+.+..+....
T Consensus 228 ~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY 283 (320)
T PHA02738 228 PPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQY 283 (320)
T ss_pred CCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHH
Confidence 479999999999999877655332 334689999999999999887776444
No 26
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=97.36 E-value=0.0006 Score=55.06 Aligned_cols=50 Identities=10% Similarity=0.019 Sum_probs=37.6
Q ss_pred HHHHHHc-CCcEEEEeCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCC
Q 026102 4 LISLIGE-ERRGVFWFIALQECPGAIITAYLMRTEQLSSEGALESLRQSCESV 55 (243)
Q Consensus 4 ~i~~i~~-~~~VLVHC~~G~sRS~avv~AyLm~~~~~~~~~A~~~vr~~rp~~ 55 (243)
+.++++. .++||+||.+|. |++++.+.++.. .|++.+++++..+..--..
T Consensus 78 f~~~~~~~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~~ 128 (135)
T TIGR01244 78 FRAAIGAAEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYDL 128 (135)
T ss_pred HHHHHHhCCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCCc
Confidence 3444553 478999999999 987777655554 6899999999988765443
No 27
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=97.01 E-value=0.0013 Score=55.08 Aligned_cols=39 Identities=8% Similarity=0.100 Sum_probs=31.9
Q ss_pred CCcEEEEeCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHH
Q 026102 11 ERRGVFWFIALQECPGAIITAYLMRTEQLSSEGALESLRQ 50 (243)
Q Consensus 11 ~~~VLVHC~~G~sRS~avv~AyLm~~~~~~~~~A~~~vr~ 50 (243)
+.+|||||..|..|+++|++.|= +.+||++..|++..+.
T Consensus 91 n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 91 NYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRR 129 (164)
T ss_dssp G-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHH
T ss_pred CCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHH
Confidence 46999999999999999988876 6779999999988875
No 28
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=96.90 E-value=0.00069 Score=64.92 Aligned_cols=59 Identities=19% Similarity=0.149 Sum_probs=44.2
Q ss_pred cEEEEeCCCCchhHHHHHHHHHHhCCCC-HHHHHHHHHHhC---C--CCCCCHHHHHHHHHHHHc
Q 026102 13 RGVFWFIALQECPGAIITAYLMRTEQLS-SEGALESLRQSC---E--SVCPNDGFLEQLKMFEEM 71 (243)
Q Consensus 13 ~VLVHC~~G~sRS~avv~AyLm~~~~~~-~~~A~~~vr~~r---p--~~~pn~~f~~qL~~~~~~ 71 (243)
.|.|||.+|.+|++.+++||||+..-.. .++|+.+.-.+| . ...--+...+.+.-|+.+
T Consensus 109 VvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv~Y~~~~ 173 (434)
T KOG2283|consen 109 VVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYVGYFSRV 173 (434)
T ss_pred eEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHHHHHHHHH
Confidence 4579999999999999999999997664 999999999988 2 122233445555555553
No 29
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=96.86 E-value=0.00056 Score=64.51 Aligned_cols=73 Identities=15% Similarity=0.103 Sum_probs=58.6
Q ss_pred cEEEEeCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCCCCCCCHhHHHH
Q 026102 13 RGVFWFIALQECPGAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGFKVNRGSPIYKRF 85 (243)
Q Consensus 13 ~VLVHC~~G~sRS~avv~AyLm~~~~~~~~~A~~~vr~~rp~~~pn~~f~~qL~~~~~~~~~~~~~~~~~~~~ 85 (243)
=|+|||..|..|..-++.+|||...+++..+|+..+...||...=-...+..|...+.--....++.|.-..|
T Consensus 126 LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~~~p~~vs~p~~~~~ 198 (393)
T KOG2386|consen 126 LIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHDIFPFKVSCPSMPDW 198 (393)
T ss_pred EEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhcccccccccccCCCCcch
Confidence 4889999999999999999999999999999999999999877666778888877776554444433333333
No 30
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=96.74 E-value=0.0024 Score=66.16 Aligned_cols=57 Identities=11% Similarity=0.026 Sum_probs=44.1
Q ss_pred cEEEEeCCCCchhHHHHHHHHHH-----hCCCCHHHHHHHHHHhCCCCCCCHH---HHHHHHHHH
Q 026102 13 RGVFWFIALQECPGAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDG---FLEQLKMFE 69 (243)
Q Consensus 13 ~VLVHC~~G~sRS~avv~AyLm~-----~~~~~~~~A~~~vr~~rp~~~pn~~---f~~qL~~~~ 69 (243)
.|||||.||+|||+.++++=+|- ......-+.+..+|..|-.+.++.. |++|+.++.
T Consensus 1065 PilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQT~~QYkFVyevil~~ 1129 (1144)
T KOG0792|consen 1065 PILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQTLSQYKFVYEVILRV 1129 (1144)
T ss_pred CeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccchHHhhHHHHHHHHH
Confidence 79999999999999888554432 3356788999999999998888865 566665543
No 31
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=96.44 E-value=0.01 Score=52.78 Aligned_cols=54 Identities=15% Similarity=0.052 Sum_probs=42.6
Q ss_pred CcEEEEeCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHH
Q 026102 12 RRGVFWFIALQECPGAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQL 65 (243)
Q Consensus 12 ~~VLVHC~~G~sRS~avv~AyLm~~~~~~~~~A~~~vr~~rp~~~pn~~f~~qL 65 (243)
++||+||.+|.-|++.+++-|++...+..-..+-++++.-++......+-..+.
T Consensus 137 ~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~~~~~~~ 190 (249)
T COG2365 137 GPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERRGILEYV 190 (249)
T ss_pred CCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhHHHHHHH
Confidence 899999999999999999999988877777778888887777665555333443
No 32
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.20 E-value=0.0029 Score=56.84 Aligned_cols=48 Identities=19% Similarity=0.059 Sum_probs=30.7
Q ss_pred CCcEEEEeCCCCchhHHHHHHH-HHHhCCCC-------------HHHHHHHHHHhCCCCCCC
Q 026102 11 ERRGVFWFIALQECPGAIITAY-LMRTEQLS-------------SEGALESLRQSCESVCPN 58 (243)
Q Consensus 11 ~~~VLVHC~~G~sRS~avv~Ay-Lm~~~~~~-------------~~~A~~~vr~~rp~~~pn 58 (243)
.+.++|||.||+||+++.++.- ||+...-+ ..+.+..+|+.|-.+.-|
T Consensus 218 t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~LRsQRmkmVQn 279 (302)
T COG5599 218 TGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLSLRSQRMKMVQN 279 (302)
T ss_pred CCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999887655 44432211 223455666666444444
No 33
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.18 E-value=0.01 Score=55.57 Aligned_cols=51 Identities=8% Similarity=-0.038 Sum_probs=37.6
Q ss_pred CCcEEEEeCCCCchhHHHHHHH-HHHh--C---CCCHHHHHHHHHHhCCCCCCCHHH
Q 026102 11 ERRGVFWFIALQECPGAIITAY-LMRT--E---QLSSEGALESLRQSCESVCPNDGF 61 (243)
Q Consensus 11 ~~~VLVHC~~G~sRS~avv~Ay-Lm~~--~---~~~~~~A~~~vr~~rp~~~pn~~f 61 (243)
.+.++|||.+|+||++++++.. .|.. . .....+.+..+|..|+.+..+..+
T Consensus 299 ~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Q 355 (415)
T KOG0789|consen 299 QEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQ 355 (415)
T ss_pred CCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhH
Confidence 3689999999999999999644 3322 1 234888888899999877665443
No 34
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=95.84 E-value=0.0051 Score=58.80 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=38.3
Q ss_pred CcEEEEeCCCCchhHHHH-HHHHH---HhCC----CCHHHHHHHHHHhCCCCCCCHHH
Q 026102 12 RRGVFWFIALQECPGAII-TAYLM---RTEQ----LSSEGALESLRQSCESVCPNDGF 61 (243)
Q Consensus 12 ~~VLVHC~~G~sRS~avv-~AyLm---~~~~----~~~~~A~~~vr~~rp~~~pn~~f 61 (243)
+.|+|||.||++|+++++ |--|| +..| ++....+++||+.|..+...+..
T Consensus 452 gpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQ 509 (600)
T KOG0790|consen 452 GPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQ 509 (600)
T ss_pred CcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHh
Confidence 589999999999998865 44444 3334 67889999999999877655543
No 35
>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes. The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.
Probab=94.72 E-value=0.024 Score=42.90 Aligned_cols=19 Identities=26% Similarity=0.828 Sum_probs=18.2
Q ss_pred ceeccccceeccccccccc
Q 026102 132 AYRCKKCRRVVALQENVVD 150 (243)
Q Consensus 132 ~yrCrKCR~~Lf~~~~il~ 150 (243)
.|.|++|+..|+.+.+++.
T Consensus 2 vf~C~~C~t~l~ds~~lvs 20 (96)
T PF03226_consen 2 VFQCKNCKTILADSNELVS 20 (96)
T ss_pred EEECCCCCCCcCCHHHhee
Confidence 6899999999999999998
No 36
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=94.70 E-value=0.063 Score=50.23 Aligned_cols=54 Identities=15% Similarity=0.086 Sum_probs=39.4
Q ss_pred CcEEEEeCCCCchhHHHHHHH-HHHhCC----CCHHHHHHHHHHhCCCCCCCHHHHHHH
Q 026102 12 RRGVFWFIALQECPGAIITAY-LMRTEQ----LSSEGALESLRQSCESVCPNDGFLEQL 65 (243)
Q Consensus 12 ~~VLVHC~~G~sRS~avv~Ay-Lm~~~~----~~~~~A~~~vr~~rp~~~pn~~f~~qL 65 (243)
+.++|||.||++|+++.++-- |++..+ .+.-..+..+|..|+.+.++.....-|
T Consensus 288 ~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~~mVqte~Qyvfl 346 (374)
T KOG0791|consen 288 GPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARMLMVQTEDQYVFL 346 (374)
T ss_pred CceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhccccccchHHHHHHH
Confidence 478999999999999887543 444433 345567777888899898887655444
No 37
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=94.43 E-value=0.18 Score=48.77 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=48.1
Q ss_pred CCcEEEEeCCCCchhHHHHHHHHHHhCCCC----------------HHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 026102 11 ERRGVFWFIALQECPGAIITAYLMRTEQLS----------------SEGALESLRQSCESVCPNDGFLEQLKMF 68 (243)
Q Consensus 11 ~~~VLVHC~~G~sRS~avv~AyLm~~~~~~----------------~~~A~~~vr~~rp~~~pn~~f~~qL~~~ 68 (243)
+.+|||+|..|.-.|+.|++|.|+..++.+ ..+-|..|-+.+|.+.|..+.+++.-.|
T Consensus 376 ~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 376 GKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred CCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 568999999999999999999999876531 2235778888899999999999988665
No 38
>PLN02727 NAD kinase
Probab=93.45 E-value=0.097 Score=54.38 Aligned_cols=40 Identities=8% Similarity=-0.002 Sum_probs=32.0
Q ss_pred HHHHHH-H-cCCcEEEEeCCCCchhHHHHHHHHHHhCCCCHH
Q 026102 3 VLISLI-G-EERRGVFWFIALQECPGAIITAYLMRTEQLSSE 42 (243)
Q Consensus 3 ~~i~~i-~-~~~~VLVHC~~G~sRS~avv~AyLm~~~~~~~~ 42 (243)
.+.+++ + ..++||+||..|..|++++++.||.+..+....
T Consensus 331 ~fa~~l~~slpkPVLvHCKSGarRAGamvA~yl~~~~~~~~~ 372 (986)
T PLN02727 331 KFASLVSDSSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSAER 372 (986)
T ss_pred HHHHHHHhhcCCCEEEECCCCCchHHHHHHHHHHHHcccchh
Confidence 355666 3 257999999999999999999999987775433
No 39
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=93.18 E-value=0.17 Score=53.24 Aligned_cols=70 Identities=17% Similarity=0.085 Sum_probs=45.2
Q ss_pred HHHHHHHcC--------CcEEEEeCCCCchhHHHH-----HHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHH----HHH
Q 026102 3 VLISLIGEE--------RRGVFWFIALQECPGAII-----TAYLMRTEQLSSEGALESLRQSCESVCPNDGFL----EQL 65 (243)
Q Consensus 3 ~~i~~i~~~--------~~VLVHC~~G~sRS~avv-----~AyLm~~~~~~~~~A~~~vr~~rp~~~pn~~f~----~qL 65 (243)
.+++|++.. |.++|||.||+||+++.+ +..++.....+.-+-...+|..|+.+.-..... +.|
T Consensus 714 ~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~mVQt~eQYiFi~~Al 793 (1087)
T KOG4228|consen 714 GLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNMVQTEEQYIFIHEAL 793 (1087)
T ss_pred HHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccccccHHHHHHHHHHH
Confidence 356666553 689999999999999865 233333434567677788888888765554432 444
Q ss_pred HHHHHcC
Q 026102 66 KMFEEMG 72 (243)
Q Consensus 66 ~~~~~~~ 72 (243)
.++-..|
T Consensus 794 lE~~~~G 800 (1087)
T KOG4228|consen 794 LEACLCG 800 (1087)
T ss_pred HHHHhcC
Confidence 4444444
No 40
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=91.03 E-value=0.31 Score=39.95 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=30.5
Q ss_pred CCcEEEEeCCCCch----hHHHHHHHHHHhCCCCHHHHHHHHHHhCC
Q 026102 11 ERRGVFWFIALQEC----PGAIITAYLMRTEQLSSEGALESLRQSCE 53 (243)
Q Consensus 11 ~~~VLVHC~~G~sR----S~avv~AyLm~~~~~~~~~A~~~vr~~rp 53 (243)
.++.+||+...-.+ ++.++.+|+|...++++++|++-+...-|
T Consensus 66 ~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p 112 (141)
T PF14671_consen 66 KKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQP 112 (141)
T ss_dssp TTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT-
T ss_pred cCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 57899998766543 36678999999999999999999987754
No 41
>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....
Probab=85.90 E-value=0.61 Score=37.45 Aligned_cols=67 Identities=24% Similarity=0.410 Sum_probs=40.5
Q ss_pred CCCcceeccccceecccccccccCCCCCCcchhhhhhhccCCCCCCCCCCCCceeeeCcccc--cchhhc---ccccceE
Q 026102 128 NRTPAYRCKKCRRVVALQENVVDHIPGEGETAFEWHKRKSGNRFNRSDESECSSIFVEPLRW--MTAVEE---GALEGKL 202 (243)
Q Consensus 128 ~~~~~yrCrKCR~~Lf~~~~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~Fiepl~W--m~~~~~---~~~~GKL 202 (243)
.....|.|+.|...||.+++=.+... |=. | |-+|++. +....+ +...--+
T Consensus 33 ~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~--GWP----------------------S-F~~~i~~~~v~~~~D~s~g~~R~Ev 87 (124)
T PF01641_consen 33 KEEGIYVCAVCGTPLFSSDTKFDSGC--GWP----------------------S-FWQPIPGDAVKEREDFSHGMVRTEV 87 (124)
T ss_dssp TSSEEEEETTTS-EEEEGGGEETSSS--SSS----------------------E-ESSCSSTTSEEEEEEECTSSEEEEE
T ss_pred CCCEEEEcCCCCCccccCcccccCCc--CCc----------------------c-ccCcCChHHEEEeccccCCceEEEE
Confidence 35679999999999999886544322 211 1 4444432 222111 2344578
Q ss_pred eCCCCCCCccceeccCC
Q 026102 203 SCAHCEARLGYFNWSGI 219 (243)
Q Consensus 203 ~CPkC~~klGsf~w~G~ 219 (243)
.|.+|++.||.-=-.|-
T Consensus 88 ~C~~Cg~HLGHVF~DGp 104 (124)
T PF01641_consen 88 RCARCGSHLGHVFDDGP 104 (124)
T ss_dssp EETTTCCEEEEEESTSS
T ss_pred EecCCCCccccEeCCCC
Confidence 99999999997544553
No 42
>PRK05508 methionine sulfoxide reductase B; Provisional
Probab=85.79 E-value=0.89 Score=36.24 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=20.4
Q ss_pred CCCcceeccccceecccccccccCC
Q 026102 128 NRTPAYRCKKCRRVVALQENVVDHI 152 (243)
Q Consensus 128 ~~~~~yrCrKCR~~Lf~~~~il~H~ 152 (243)
.....|.|+-|...||.+++=.+..
T Consensus 29 ~~~G~Y~C~~Cg~pLF~S~~KfdSg 53 (119)
T PRK05508 29 FEKGTYVCKQCGAPLYRSEDKFKSG 53 (119)
T ss_pred CCCeEEEecCCCCccccccccccCC
Confidence 4567999999999999998765544
No 43
>PRK00222 methionine sulfoxide reductase B; Provisional
Probab=82.89 E-value=1.5 Score=35.99 Aligned_cols=66 Identities=21% Similarity=0.459 Sum_probs=40.3
Q ss_pred CCCcceeccccceecccccccccCCCCCCcchhhhhhhccCCCCCCCCCCCCceeeeCcccc--cchhhc---ccccceE
Q 026102 128 NRTPAYRCKKCRRVVALQENVVDHIPGEGETAFEWHKRKSGNRFNRSDESECSSIFVEPLRW--MTAVEE---GALEGKL 202 (243)
Q Consensus 128 ~~~~~yrCrKCR~~Lf~~~~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~Fiepl~W--m~~~~~---~~~~GKL 202 (243)
.....|.|+.|...||.+.+=.+...| =.+ |-+|+.. +....+ |...-.+
T Consensus 39 ~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~G--WPS-----------------------F~~~i~~~~V~~~~D~s~gm~RtEv 93 (142)
T PRK00222 39 KEKGIYVCIVCGEPLFSSDTKFDSGCG--WPS-----------------------FTKPIDEEAIRELRDTSHGMVRTEV 93 (142)
T ss_pred CCCeEEEecCCCchhcCCcccccCCCC--CcC-----------------------cCcccCCCceEEeeccCCCceEEEE
Confidence 456799999999999999765443322 111 3344422 111111 2223469
Q ss_pred eCCCCCCCccceeccC
Q 026102 203 SCAHCEARLGYFNWSG 218 (243)
Q Consensus 203 ~CPkC~~klGsf~w~G 218 (243)
.|-+|++.||.-=-.|
T Consensus 94 ~C~~Cg~HLGHVF~DG 109 (142)
T PRK00222 94 RCANCDSHLGHVFPDG 109 (142)
T ss_pred EeCCCCCccCcccCCC
Confidence 9999999999833355
No 44
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=82.28 E-value=1.6 Score=46.24 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=36.3
Q ss_pred CCcEEEEeCCCCchhHHHHHHHHH----HhCC-CCHHHHHHHHHHhCCCCCCC
Q 026102 11 ERRGVFWFIALQECPGAIITAYLM----RTEQ-LSSEGALESLRQSCESVCPN 58 (243)
Q Consensus 11 ~~~VLVHC~~G~sRS~avv~AyLm----~~~~-~~~~~A~~~vr~~rp~~~pn 58 (243)
.+++.|||.+|++||++.+++-++ +..+ ++.-++...+|..||.+.-.
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~mv~t 1070 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGMVDT 1070 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccccCc
Confidence 568999999999999877755433 3334 57778899999999876443
No 45
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.01 E-value=4.9 Score=32.28 Aligned_cols=45 Identities=7% Similarity=-0.122 Sum_probs=29.8
Q ss_pred HHHHHHc-CCcEEEEeCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHH
Q 026102 4 LISLIGE-ERRGVFWFIALQECPGAIITAYLMRTEQLSSEGALESLRQ 50 (243)
Q Consensus 4 ~i~~i~~-~~~VLVHC~~G~sRS~avv~AyLm~~~~~~~~~A~~~vr~ 50 (243)
+.+++++ ++.||.||..|- ||.++ .+.--...||+-+++.++=+.
T Consensus 79 f~~Al~eaegPVlayCrsGt-Rs~~l-y~~~~~~~gm~~de~~a~g~a 124 (130)
T COG3453 79 FQRALDEAEGPVLAYCRSGT-RSLNL-YGLGELDGGMSRDEIEALGQA 124 (130)
T ss_pred HHHHHHHhCCCEEeeecCCc-hHHHH-HHHHHHhcCCCHHHHHHHHHh
Confidence 4455555 579999999987 77444 222225668998887766444
No 46
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.86 E-value=2.8 Score=41.84 Aligned_cols=31 Identities=10% Similarity=0.039 Sum_probs=23.1
Q ss_pred HHHHHcCC-cEEEEeCCCCchhHHHH-HHHHHH
Q 026102 5 ISLIGEER-RGVFWFIALQECPGAII-TAYLMR 35 (243)
Q Consensus 5 i~~i~~~~-~VLVHC~~G~sRS~avv-~AyLm~ 35 (243)
++-++.++ .|||||.-|.-|++-++ +|-||-
T Consensus 367 a~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlL 399 (717)
T KOG4471|consen 367 ADKVESESRSVLVHCSDGWDRTAQLVSLAMLLL 399 (717)
T ss_pred HHHHhcCCceEEEEcCCCccchHHHHHHHHHHh
Confidence 44555554 79999999999998877 455554
No 47
>TIGR00357 methionine-R-sulfoxide reductase. This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.
Probab=79.24 E-value=2.1 Score=34.81 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=20.2
Q ss_pred CCCcceeccccceecccccccccCC
Q 026102 128 NRTPAYRCKKCRRVVALQENVVDHI 152 (243)
Q Consensus 128 ~~~~~yrCrKCR~~Lf~~~~il~H~ 152 (243)
.....|.|+.|...||.+++=.+..
T Consensus 36 ~~~G~Y~C~~Cg~pLF~S~~KfdSg 60 (134)
T TIGR00357 36 KEEGIYVDITCGEPLFSSEDKFDSG 60 (134)
T ss_pred CCCeEEEccCCCCccccccchhcCC
Confidence 3567999999999999998765543
No 48
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=77.33 E-value=2.4 Score=43.19 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=33.5
Q ss_pred cEEEEeCCCCchhHHHHHHHH-----HHh-CCCCHHHHHHHHHHhCCCCCCC
Q 026102 13 RGVFWFIALQECPGAIITAYL-----MRT-EQLSSEGALESLRQSCESVCPN 58 (243)
Q Consensus 13 ~VLVHC~~G~sRS~avv~AyL-----m~~-~~~~~~~A~~~vr~~rp~~~pn 58 (243)
.|+|||..|-+|+++-++-=| .+- ..++....++.||..||.+.-.
T Consensus 929 pIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~GmVaT 980 (1004)
T KOG0793|consen 929 PIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRPGMVAT 980 (1004)
T ss_pred ceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCCcceee
Confidence 699999999999987553322 221 1356777799999999976544
No 49
>smart00714 LITAF Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.
Probab=74.80 E-value=1.4 Score=31.10 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=15.6
Q ss_pred ccceEeCCCCCCCcccee
Q 026102 198 LEGKLSCAHCEARLGYFN 215 (243)
Q Consensus 198 ~~GKL~CPkC~~klGsf~ 215 (243)
.+..-+||+|++.||.|+
T Consensus 49 kd~~H~Cp~C~~~lg~~~ 66 (67)
T smart00714 49 KDVNHYCPNCGAFLGTYN 66 (67)
T ss_pred cCccEECCCCCCEeEEec
Confidence 466889999999999985
No 50
>PF09814 HECT_2: HECT-like Ubiquitin-conjugating enzyme (E2)-binding; InterPro: IPR019193 This entry consists of E3 ubiquitin-protein ligases which accept ubiquitin from specific E2 ubiquitin-conjugating enzymes, and transfer it to substrates, generally promoting their degradation by the proteasome [].
Probab=73.27 E-value=4.8 Score=37.07 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=16.2
Q ss_pred cceeccccceecccccccc
Q 026102 131 PAYRCKKCRRVVALQENVV 149 (243)
Q Consensus 131 ~~yrCrKCR~~Lf~~~~il 149 (243)
+.++|++|+..|.....+.
T Consensus 105 ~~~~C~~C~~~li~~~~~~ 123 (354)
T PF09814_consen 105 FSLCCRNCKNPLIPSRNFK 123 (354)
T ss_pred eEEECCCCCCcccCccccC
Confidence 6899999999998887654
No 51
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=71.81 E-value=2.7 Score=24.51 Aligned_cols=21 Identities=33% Similarity=0.710 Sum_probs=14.3
Q ss_pred eCCCCCCCccceeccCCCCC-CCCc
Q 026102 203 SCAHCEARLGYFNWSGIQCS-CGSW 226 (243)
Q Consensus 203 ~CPkC~~klGsf~w~G~kCs-CG~~ 226 (243)
.||.|++.| .-+-..|+ ||.-
T Consensus 2 ~CP~C~~~V---~~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 2 TCPECGAEV---PESAKFCPHCGYD 23 (26)
T ss_pred cCCCCcCCc---hhhcCcCCCCCCC
Confidence 488888887 33455786 8753
No 52
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=69.93 E-value=3 Score=33.59 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=26.2
Q ss_pred cceEeCCCCCCCccceeccCCCCC-CCCcccCcee
Q 026102 199 EGKLSCAHCEARLGYFNWSGIQCS-CGSWITPAFQ 232 (243)
Q Consensus 199 ~GKL~CPkC~~klGsf~w~G~kCs-CG~~v~Paf~ 232 (243)
-.|-.||+|++|.=-.|=.-..|. ||.-+.|+..
T Consensus 7 GtKr~Cp~cg~kFYDLnk~p~vcP~cg~~~~~~~~ 41 (129)
T TIGR02300 7 GTKRICPNTGSKFYDLNRRPAVSPYTGEQFPPEEA 41 (129)
T ss_pred CccccCCCcCccccccCCCCccCCCcCCccCcchh
Confidence 357889999999755555777895 9999988844
No 53
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=69.34 E-value=3.1 Score=32.60 Aligned_cols=32 Identities=31% Similarity=0.655 Sum_probs=24.5
Q ss_pred cceEeCCCCCCCccceeccCCCCC-CCCcccCc
Q 026102 199 EGKLSCAHCEARLGYFNWSGIQCS-CGSWITPA 230 (243)
Q Consensus 199 ~GKL~CPkC~~klGsf~w~G~kCs-CG~~v~Pa 230 (243)
--|-.||+|++|-=-.|=.-..|. ||+-+.|.
T Consensus 7 GtKR~Cp~CG~kFYDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 7 GTKRTCPSCGAKFYDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred CCcccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence 357889999999644444667896 99988877
No 54
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=69.28 E-value=2.8 Score=26.67 Aligned_cols=22 Identities=32% Similarity=0.877 Sum_probs=16.6
Q ss_pred eCCCCCCCccceeccCC---CC-CCC
Q 026102 203 SCAHCEARLGYFNWSGI---QC-SCG 224 (243)
Q Consensus 203 ~CPkC~~klGsf~w~G~---kC-sCG 224 (243)
+||+|+..|-.....+. .| +||
T Consensus 1 ~CP~C~~~l~~~~~~~~~id~C~~C~ 26 (41)
T PF13453_consen 1 KCPRCGTELEPVRLGDVEIDVCPSCG 26 (41)
T ss_pred CcCCCCcccceEEECCEEEEECCCCC
Confidence 49999999988888665 45 463
No 55
>PF10601 zf-LITAF-like: LITAF-like zinc ribbon domain; InterPro: IPR006629 Members of this family display a conserved zinc ribbon structure [] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS). The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [].
Probab=68.29 E-value=2.4 Score=30.31 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=15.1
Q ss_pred ccceEeCCCCCCCcccee
Q 026102 198 LEGKLSCAHCEARLGYFN 215 (243)
Q Consensus 198 ~~GKL~CPkC~~klGsf~ 215 (243)
.+-.-.||+|++.||.|.
T Consensus 55 kd~~H~Cp~C~~~lg~~~ 72 (73)
T PF10601_consen 55 KDVYHYCPNCGAFLGTYK 72 (73)
T ss_pred cCceEECCCCCCEeEEEe
Confidence 355789999999999885
No 56
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=66.90 E-value=5.6 Score=36.33 Aligned_cols=25 Identities=16% Similarity=0.414 Sum_probs=20.4
Q ss_pred CCCcceeccccceecccccccccCC
Q 026102 128 NRTPAYRCKKCRRVVALQENVVDHI 152 (243)
Q Consensus 128 ~~~~~yrCrKCR~~Lf~~~~il~H~ 152 (243)
.....|.|.-|...||.+++=.+..
T Consensus 32 ~~~G~y~c~~c~~~LF~s~~Kf~sg 56 (283)
T PRK05550 32 DEKGVYLCRRCGAPLFRSEDKFNSG 56 (283)
T ss_pred CCCcEEEcCCCCchhcCChhhccCC
Confidence 4567999999999999988765544
No 57
>smart00400 ZnF_CHCC zinc finger.
Probab=65.60 E-value=8 Score=26.01 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=24.1
Q ss_pred EEEeCCCCchhHHHHHHHHHHhCCCCHHHHHHHH
Q 026102 15 VFWFIALQECPGAIITAYLMRTEQLSSEGALESL 48 (243)
Q Consensus 15 LVHC~~G~sRS~avv~AyLm~~~~~~~~~A~~~v 48 (243)
..||.+ -+..+- +|.++|+.+++++.||++.|
T Consensus 23 ~~~Cf~-cg~gGd-~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGN-VISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCC-HHHHHHHHHCcCHHHHHHHh
Confidence 568874 344443 47888999999999999875
No 58
>PF12773 DZR: Double zinc ribbon
Probab=64.78 E-value=3.8 Score=26.83 Aligned_cols=32 Identities=28% Similarity=0.519 Sum_probs=21.2
Q ss_pred cceEeCCCCCCCccceeccCCCC-CCCCcccCc
Q 026102 199 EGKLSCAHCEARLGYFNWSGIQC-SCGSWITPA 230 (243)
Q Consensus 199 ~GKL~CPkC~~klGsf~w~G~kC-sCG~~v~Pa 230 (243)
.+-..||+|+++|....=....| .||+-+.|.
T Consensus 10 ~~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~ 42 (50)
T PF12773_consen 10 DDAKFCPHCGTPLPPPDQSKKICPNCGAENPPN 42 (50)
T ss_pred ccccCChhhcCChhhccCCCCCCcCCcCCCcCC
Confidence 45677888888888444444568 488776543
No 59
>PF11648 RIG-I_C-RD: C-terminal domain of RIG-I; InterPro: IPR021673 This family of proteins represents the regulatory domain RD of RIG-I, a protein which initiates a signalling cascade that provides essential antiviral protection for the host. The RD domain binds viral RNA, activating the RIG-I ATPase by RNA-dependent dimerisation. The structure of RD contains a zinc-binding domain and is thought to confer ligand specificity []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2RQB_A 3GA3_A 2W4R_D 3EQT_A 2RQA_A 2RMJ_A 3NCU_A 2QFD_C 2QFB_D 3TMI_A ....
Probab=64.75 E-value=3.1 Score=33.18 Aligned_cols=20 Identities=15% Similarity=0.526 Sum_probs=17.4
Q ss_pred Ccceeccccceecccccccc
Q 026102 130 TPAYRCKKCRRVVALQENVV 149 (243)
Q Consensus 130 ~~~yrCrKCR~~Lf~~~~il 149 (243)
...+-||||...+.++++|-
T Consensus 2 ~v~llC~kC~~~~C~~~DIr 21 (123)
T PF11648_consen 2 NVKLLCRKCKKFACSGSDIR 21 (123)
T ss_dssp GEEEEETTTTCEEEEGGGEE
T ss_pred ceEEECCCCCceeEchhheE
Confidence 35789999999999999983
No 60
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=64.46 E-value=11 Score=25.57 Aligned_cols=26 Identities=27% Similarity=0.206 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHh
Q 026102 26 GAIITAYLMRTEQLSSEGALESLRQS 51 (243)
Q Consensus 26 ~avv~AyLm~~~~~~~~~A~~~vr~~ 51 (243)
..-+.+.||..+|++.++|+..++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 44567889999999999999999865
No 61
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=64.05 E-value=2.4 Score=28.82 Aligned_cols=18 Identities=28% Similarity=0.737 Sum_probs=14.8
Q ss_pred ceeccccceecccccccc
Q 026102 132 AYRCKKCRRVVALQENVV 149 (243)
Q Consensus 132 ~yrCrKCR~~Lf~~~~il 149 (243)
.+||+.|.+.||...++.
T Consensus 4 eiRC~~CnklLa~~g~~~ 21 (51)
T PF10122_consen 4 EIRCGHCNKLLAKAGEVI 21 (51)
T ss_pred ceeccchhHHHhhhcCcc
Confidence 689999999999965443
No 62
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=62.44 E-value=13 Score=33.27 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=29.7
Q ss_pred cCCcEEEEeCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHH
Q 026102 10 EERRGVFWFIALQECPGAIITAYLMRTEQLSSEGALESLRQ 50 (243)
Q Consensus 10 ~~~~VLVHC~~G~sRS~avv~AyLm~~~~~~~~~A~~~vr~ 50 (243)
.+..+||||..|.-|.+.+|.. |=+-.+|++.-.++.-+.
T Consensus 147 ~N~P~Lihc~rGkhRtg~lVgc-lRklq~W~lssil~Ey~~ 186 (249)
T KOG1572|consen 147 RNYPILIHCKRGKHRTGCLVGC-LRKLQNWSLSSILDEYLR 186 (249)
T ss_pred cCCceEEecCCCCcchhhhHHH-HHHHhccchhHHHHHHHH
Confidence 3458999999999999877654 446667888777665443
No 63
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=62.22 E-value=2.9 Score=24.07 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=9.8
Q ss_pred cceEeCCCCCCCc
Q 026102 199 EGKLSCAHCEARL 211 (243)
Q Consensus 199 ~GKL~CPkC~~kl 211 (243)
.+--.||+|+++|
T Consensus 14 ~~~~fC~~CG~~L 26 (26)
T PF13248_consen 14 PDAKFCPNCGAKL 26 (26)
T ss_pred cccccChhhCCCC
Confidence 4566789898876
No 64
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=62.05 E-value=5.4 Score=26.55 Aligned_cols=22 Identities=32% Similarity=0.690 Sum_probs=18.7
Q ss_pred ccceEeCCCCCCCccceeccCC
Q 026102 198 LEGKLSCAHCEARLGYFNWSGI 219 (243)
Q Consensus 198 ~~GKL~CPkC~~klGsf~w~G~ 219 (243)
..|+|.|+.|+.++-...|.|.
T Consensus 2 l~g~l~C~~CG~~m~~~~~~~~ 23 (58)
T PF13408_consen 2 LSGLLRCGHCGSKMTRRKRKGK 23 (58)
T ss_pred CCCcEEcccCCcEeEEEECCCC
Confidence 4689999999999999888643
No 65
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=61.68 E-value=11 Score=27.79 Aligned_cols=31 Identities=0% Similarity=-0.008 Sum_probs=19.6
Q ss_pred HHHHcCCcEEEEeCCCCchhHHHHHHHHHHhCCC
Q 026102 6 SLIGEERRGVFWFIALQECPGAIITAYLMRTEQL 39 (243)
Q Consensus 6 ~~i~~~~~VLVHC~~G~sRS~avv~AyLm~~~~~ 39 (243)
..+..+..|+|+|..|. ||.. ++.. +...|.
T Consensus 56 ~~~~~~~~ivv~C~~G~-rs~~-aa~~-L~~~G~ 86 (100)
T cd01523 56 DQLPDDQEVTVICAKEG-SSQF-VAEL-LAERGY 86 (100)
T ss_pred hhCCCCCeEEEEcCCCC-cHHH-HHHH-HHHcCc
Confidence 44456678999999996 7643 3333 445554
No 66
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=61.13 E-value=10 Score=23.41 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=9.9
Q ss_pred cceEeCCCCCCCc
Q 026102 199 EGKLSCAHCEARL 211 (243)
Q Consensus 199 ~GKL~CPkC~~kl 211 (243)
.+++.||+|+..+
T Consensus 23 ~~~v~C~~C~~~~ 35 (38)
T TIGR02098 23 GGKVRCGKCGHVW 35 (38)
T ss_pred CCEEECCCCCCEE
Confidence 4588899988764
No 67
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=59.27 E-value=13 Score=27.47 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=18.3
Q ss_pred HcCCcEEEEeCCCCchhHHHHHHHHHHhCCC
Q 026102 9 GEERRGVFWFIALQECPGAIITAYLMRTEQL 39 (243)
Q Consensus 9 ~~~~~VLVHC~~G~sRS~avv~AyLm~~~~~ 39 (243)
.++..|+|+|..| .||... +.+| ...|.
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a-~~~L-~~~G~ 86 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA-SAYL-KERGF 86 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH-HHHH-HHhCC
Confidence 4566899999988 487543 3344 44454
No 68
>PLN02160 thiosulfate sulfurtransferase
Probab=58.83 E-value=11 Score=30.07 Aligned_cols=29 Identities=0% Similarity=-0.278 Sum_probs=19.2
Q ss_pred HcCCcEEEEeCCCCchhHHHHHHHHHHhCCCC
Q 026102 9 GEERRGVFWFIALQECPGAIITAYLMRTEQLS 40 (243)
Q Consensus 9 ~~~~~VLVHC~~G~sRS~avv~AyLm~~~~~~ 40 (243)
..+.+|+|||..|. ||... +.++...|.+
T Consensus 79 ~~~~~IivyC~sG~-RS~~A--a~~L~~~G~~ 107 (136)
T PLN02160 79 NPADDILVGCQSGA-RSLKA--TTELVAAGYK 107 (136)
T ss_pred CCCCcEEEECCCcH-HHHHH--HHHHHHcCCC
Confidence 45678999999995 87644 3334555543
No 69
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=58.48 E-value=10 Score=35.45 Aligned_cols=27 Identities=7% Similarity=-0.023 Sum_probs=19.4
Q ss_pred HHHHHHH-cCCcEEEEeCCCCchhHHHH
Q 026102 3 VLISLIG-EERRGVFWFIALQECPGAII 29 (243)
Q Consensus 3 ~~i~~i~-~~~~VLVHC~~G~sRS~avv 29 (243)
.+++.+. ++..|||||..|..|++-|+
T Consensus 222 ~i~~~l~~~~~~Vlvh~~dGwDrt~q~~ 249 (353)
T PF06602_consen 222 RIADLLHDEGSSVLVHCSDGWDRTSQLS 249 (353)
T ss_dssp HHHHHHHTT--EEEEECTTSSSHHHHHH
T ss_pred HHHHHhhccCceEEEEcCCCCcccHHHH
Confidence 4567774 45589999999999985544
No 70
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=57.71 E-value=10 Score=37.52 Aligned_cols=24 Identities=8% Similarity=-0.110 Sum_probs=19.7
Q ss_pred CCCCcceeccccceeccccccccc
Q 026102 127 DNRTPAYRCKKCRRVVALQENVVD 150 (243)
Q Consensus 127 ~~~~~~yrCrKCR~~Lf~~~~il~ 150 (243)
......|.|+.|...||.+.+=.+
T Consensus 413 ~~~~G~y~c~~c~~pLf~s~~Kf~ 436 (521)
T PRK14018 413 LFKPGIYVDVVSGEPLFSSADKYD 436 (521)
T ss_pred CCCCEEEEecCCCCccccCccccc
Confidence 446779999999999999976544
No 71
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=56.87 E-value=6.5 Score=24.49 Aligned_cols=11 Identities=27% Similarity=1.014 Sum_probs=9.2
Q ss_pred eEeCCCCCCCc
Q 026102 201 KLSCAHCEARL 211 (243)
Q Consensus 201 KL~CPkC~~kl 211 (243)
+|.||+|+++-
T Consensus 2 ~i~Cp~C~~~y 12 (36)
T PF13717_consen 2 IITCPNCQAKY 12 (36)
T ss_pred EEECCCCCCEE
Confidence 68899999874
No 72
>KOG4487 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.24 E-value=5.7 Score=30.70 Aligned_cols=39 Identities=28% Similarity=0.323 Sum_probs=27.1
Q ss_pred CCceeeeCcccccchhhcccc------cceEeCCCCCCCccceec-cCCC
Q 026102 178 ECSSIFVEPLRWMTAVEEGAL------EGKLSCAHCEARLGYFNW-SGIQ 220 (243)
Q Consensus 178 ~C~~~Fiepl~Wm~~~~~~~~------~GKL~CPkC~~klGsf~w-~G~k 220 (243)
.|.---++|+.||.-.++|.. .|.+.=| .+|.|+| +|.|
T Consensus 6 ~~~~~~~~~~~~m~~ElqG~~e~q~~f~gs~ds~----~~Gr~c~~D~~q 51 (110)
T KOG4487|consen 6 EKQTTVITPLGMMMLELQGELELQKDFLGSRDSP----NEGRFCEQDGEQ 51 (110)
T ss_pred ecccccccchHhhhhhhccccccchhhcccccCc----cccceeccCCCe
Confidence 344447899999998877643 3555555 6888888 6654
No 73
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=56.23 E-value=11 Score=27.79 Aligned_cols=26 Identities=15% Similarity=0.004 Sum_probs=17.8
Q ss_pred HcCCcEEEEeCCCCchhHHHHHHHHHHh
Q 026102 9 GEERRGVFWFIALQECPGAIITAYLMRT 36 (243)
Q Consensus 9 ~~~~~VLVHC~~G~sRS~avv~AyLm~~ 36 (243)
.+++.++|+|..|. || +.++.+|...
T Consensus 59 ~~~~~ivv~C~~G~-rS-~~aa~~L~~~ 84 (110)
T COG0607 59 PDDDPIVVYCASGV-RS-AAAAAALKLA 84 (110)
T ss_pred CCCCeEEEEeCCCC-Ch-HHHHHHHHHc
Confidence 34678999999998 77 4444444443
No 74
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=55.46 E-value=7.7 Score=23.71 Aligned_cols=23 Identities=35% Similarity=0.888 Sum_probs=11.5
Q ss_pred CCCCCCCccceec-cCCCCC-CCCcc
Q 026102 204 CAHCEARLGYFNW-SGIQCS-CGSWI 227 (243)
Q Consensus 204 CPkC~~klGsf~w-~G~kCs-CG~~v 227 (243)
|..|++.+. ... ...+|. ||..|
T Consensus 3 C~~Cg~~~~-~~~~~~irC~~CG~RI 27 (32)
T PF03604_consen 3 CGECGAEVE-LKPGDPIRCPECGHRI 27 (32)
T ss_dssp ESSSSSSE--BSTSSTSSBSSSS-SE
T ss_pred CCcCCCeeE-cCCCCcEECCcCCCeE
Confidence 556666665 223 445664 66655
No 75
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=54.77 E-value=29 Score=34.76 Aligned_cols=33 Identities=9% Similarity=-0.034 Sum_probs=23.4
Q ss_pred HHHHHHHcC-CcEEEEeCCCCchhHHHH-HHHHHH
Q 026102 3 VLISLIGEE-RRGVFWFIALQECPGAII-TAYLMR 35 (243)
Q Consensus 3 ~~i~~i~~~-~~VLVHC~~G~sRS~avv-~AyLm~ 35 (243)
.+.+.|..+ -.|||||.-|.-|+.-|+ +|=||-
T Consensus 335 ~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQllL 369 (573)
T KOG1089|consen 335 EIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQLLL 369 (573)
T ss_pred HHHHHHHhCCCeEEEEccCCcchhHHHHHHHHHHh
Confidence 356667755 589999999999986555 343443
No 76
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=54.36 E-value=5.9 Score=22.29 Aligned_cols=21 Identities=29% Similarity=0.702 Sum_probs=13.3
Q ss_pred eCCCCCCCccceeccCCCCC-CCCc
Q 026102 203 SCAHCEARLGYFNWSGIQCS-CGSW 226 (243)
Q Consensus 203 ~CPkC~~klGsf~w~G~kCs-CG~~ 226 (243)
.||+|+++|= =...-|+ ||+-
T Consensus 1 ~Cp~CG~~~~---~~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIE---DDAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCC---CcCcchhhhCCc
Confidence 4899999883 1333564 7653
No 77
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=54.01 E-value=18 Score=27.06 Aligned_cols=26 Identities=12% Similarity=-0.224 Sum_probs=17.0
Q ss_pred CCcEEEEeCCCCchhHHHHHHHHHHhCCC
Q 026102 11 ERRGVFWFIALQECPGAIITAYLMRTEQL 39 (243)
Q Consensus 11 ~~~VLVHC~~G~sRS~avv~AyLm~~~~~ 39 (243)
+..|+|+|..|. ||.. + +.+++..|.
T Consensus 66 ~~~ivv~C~~G~-rs~~-a-~~~L~~~G~ 91 (109)
T cd01533 66 RTPIVVNCAGRT-RSII-G-AQSLINAGL 91 (109)
T ss_pred CCeEEEECCCCc-hHHH-H-HHHHHHCCC
Confidence 458999999997 7633 3 344455565
No 78
>PF08996 zf-DNA_Pol: DNA Polymerase alpha zinc finger; InterPro: IPR015088 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like structure, followed by three turns, all of which involve proline. The resulting motif is a helix-turn-helix motif, in contrast to other zinc finger domains, which show anti-parallel sheet and helix conformation. Zinc binding occurs due to the presence of four cysteine residues positioned to bind the metal centre in a tetrahedral coordination geometry. The function of this domain is uncertain: it has been proposed that the zinc finger motif may be an essential part of the DNA binding domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0001882 nucleoside binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3FLO_D 1N5G_A 1K0P_A 1K18_A.
Probab=53.02 E-value=4.7 Score=34.29 Aligned_cols=12 Identities=42% Similarity=0.899 Sum_probs=4.2
Q ss_pred ccCCCCC-CCCcc
Q 026102 216 WSGIQCS-CGSWI 227 (243)
Q Consensus 216 w~G~kCs-CG~~v 227 (243)
++|..|+ |+...
T Consensus 43 ~~~~~C~~C~~~~ 55 (188)
T PF08996_consen 43 PSGLQCPNCSTPL 55 (188)
T ss_dssp TTEEEETTT--B-
T ss_pred cCcCcCCCCCCcC
Confidence 3444554 55533
No 79
>PHA02540 61 DNA primase; Provisional
Probab=52.72 E-value=74 Score=29.79 Aligned_cols=37 Identities=16% Similarity=0.027 Sum_probs=28.3
Q ss_pred cEEEEeC-CCCchhHHHHHHHHHHhCCCCHHHHHHHHHHhC
Q 026102 13 RGVFWFI-ALQECPGAIITAYLMRTEQLSSEGALESLRQSC 52 (243)
Q Consensus 13 ~VLVHC~-~G~sRS~avv~AyLm~~~~~~~~~A~~~vr~~r 52 (243)
....||. .|.+.. ++.|||...++++.||++.+-+..
T Consensus 53 ~~~yhCFgCGa~Gd---~i~Flme~e~lsf~Eav~~la~~~ 90 (337)
T PHA02540 53 GGVFKCHNCGYHRP---FGNFLKDYEPDLYREYIMERFKER 90 (337)
T ss_pred ceEEEecCCCCCCC---HHHHHHHhcCCChHHHHHHHHHHh
Confidence 3578996 466554 678999999999999998665443
No 80
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=52.25 E-value=17 Score=28.90 Aligned_cols=21 Identities=14% Similarity=-0.070 Sum_probs=17.8
Q ss_pred CCCchhHHHHHHHHHHhCCCC
Q 026102 20 ALQECPGAIITAYLMRTEQLS 40 (243)
Q Consensus 20 ~G~sRS~avv~AyLm~~~~~~ 40 (243)
.|++|+.|.+++||+...-.+
T Consensus 23 lgi~R~vA~tlv~L~~~~E~s 43 (124)
T COG4738 23 LGIPRNVATTLVCLAKGDEAS 43 (124)
T ss_pred cCCCchHHHHHHHHhcCcchh
Confidence 699999999999999875443
No 81
>COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=51.93 E-value=18 Score=29.56 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=19.0
Q ss_pred CCCcceeccccceeccccccccc
Q 026102 128 NRTPAYRCKKCRRVVALQENVVD 150 (243)
Q Consensus 128 ~~~~~yrCrKCR~~Lf~~~~il~ 150 (243)
.....|.|.-|...||.+++=.+
T Consensus 38 ~~~GiY~c~~cg~pLF~S~~Kfd 60 (140)
T COG0229 38 KEKGIYVCIVCGEPLFSSEDKFD 60 (140)
T ss_pred cCCceEEeecCCCcccccccccc
Confidence 35679999999999999987544
No 82
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=50.16 E-value=8.1 Score=26.98 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=14.4
Q ss_pred eCCCCCCCccc-eeccCCCCC-CCCc
Q 026102 203 SCAHCEARLGY-FNWSGIQCS-CGSW 226 (243)
Q Consensus 203 ~CPkC~~klGs-f~w~G~kCs-CG~~ 226 (243)
.||.|+.+... -+.....|+ ||..
T Consensus 30 ~C~~CG~~~~~~~~~r~~~C~~Cg~~ 55 (69)
T PF07282_consen 30 TCPRCGHRNKKRRSGRVFTCPNCGFE 55 (69)
T ss_pred CccCcccccccccccceEEcCCCCCE
Confidence 37777777666 444455665 6654
No 83
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=49.91 E-value=6.5 Score=23.18 Aligned_cols=10 Identities=30% Similarity=0.883 Sum_probs=5.7
Q ss_pred eCCCCCCCcc
Q 026102 203 SCAHCEARLG 212 (243)
Q Consensus 203 ~CPkC~~klG 212 (243)
+||.|+++|=
T Consensus 1 ~CP~C~s~l~ 10 (28)
T PF03119_consen 1 TCPVCGSKLV 10 (28)
T ss_dssp B-TTT--BEE
T ss_pred CcCCCCCEeE
Confidence 5999999985
No 84
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.57 E-value=8.5 Score=28.59 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=15.1
Q ss_pred EeCCCCCCCccceeccCC---CCC
Q 026102 202 LSCAHCEARLGYFNWSGI---QCS 222 (243)
Q Consensus 202 L~CPkC~~klGsf~w~G~---kCs 222 (243)
+.||.|++-|=.-.=+|. .|+
T Consensus 2 llCP~C~v~l~~~~rs~vEiD~CP 25 (88)
T COG3809 2 LLCPICGVELVMSVRSGVEIDYCP 25 (88)
T ss_pred cccCcCCceeeeeeecCceeeeCC
Confidence 568888888876666665 564
No 85
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=49.28 E-value=21 Score=26.98 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=25.2
Q ss_pred EEEeCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHHhCC
Q 026102 15 VFWFIALQECPGAIITAYLMRTEQLSSEGALESLRQSCE 53 (243)
Q Consensus 15 LVHC~~G~sRS~avv~AyLm~~~~~~~~~A~~~vr~~rp 53 (243)
+.||.+ -+..+- ++.++|...++++.+|++.+.+..-
T Consensus 54 ~~~Cf~-Cg~~Gd-~i~~v~~~~~~~f~eAv~~l~~~~~ 90 (97)
T PF01807_consen 54 RFKCFG-CGKGGD-VIDFVMKYEGCSFKEAVKWLAEEFG 90 (97)
T ss_dssp EEEETT-T--EE--HHHHHHHHHT--HHHHHHHHHHHHT
T ss_pred eEEECC-CCCCCc-HHhHHHHHhCCCHHHHHHHHHHHhC
Confidence 678874 556554 4778899999999999999987643
No 86
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=49.09 E-value=8.6 Score=24.05 Aligned_cols=23 Identities=35% Similarity=0.915 Sum_probs=15.1
Q ss_pred EeCCCCCCCccceec-cCC-CC-CCCCc
Q 026102 202 LSCAHCEARLGYFNW-SGI-QC-SCGSW 226 (243)
Q Consensus 202 L~CPkC~~klGsf~w-~G~-kC-sCG~~ 226 (243)
..|+.|+++ .|.. .|. -| +||+-
T Consensus 9 ~~C~~C~~~--~~~~~dG~~yC~~cG~~ 34 (36)
T PF11781_consen 9 EPCPVCGSR--WFYSDDGFYYCDRCGHQ 34 (36)
T ss_pred CcCCCCCCe--EeEccCCEEEhhhCceE
Confidence 458888888 4444 555 77 77763
No 87
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=48.85 E-value=8.9 Score=27.06 Aligned_cols=14 Identities=36% Similarity=0.859 Sum_probs=11.5
Q ss_pred ccccceEeCCCCCC
Q 026102 196 GALEGKLSCAHCEA 209 (243)
Q Consensus 196 ~~~~GKL~CPkC~~ 209 (243)
...+|.|.||+|+-
T Consensus 48 ~i~eg~L~Cp~c~r 61 (68)
T PF03966_consen 48 EIVEGELICPECGR 61 (68)
T ss_dssp ETTTTEEEETTTTE
T ss_pred cccCCEEEcCCCCC
Confidence 35789999999973
No 88
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=47.94 E-value=4.1 Score=27.52 Aligned_cols=32 Identities=31% Similarity=0.678 Sum_probs=23.5
Q ss_pred CCCCCCCcccee---c-cCCCC-CCCCcccCceeeec
Q 026102 204 CAHCEARLGYFN---W-SGIQC-SCGSWITPAFQLHK 235 (243)
Q Consensus 204 CPkC~~klGsf~---w-~G~kC-sCG~~v~Paf~l~~ 235 (243)
|+-|+.|+|-|. . +|.-| +|-.-++|.+.-.+
T Consensus 2 C~iCg~kigl~~~~k~~DG~iC~~C~~Kl~~~~~~~~ 38 (51)
T PF14471_consen 2 CAICGKKIGLFKRFKIKDGYICKDCLKKLSGFFSDVK 38 (51)
T ss_pred CCccccccccccceeccCccchHHHHHHhcCcccchh
Confidence 888999999988 4 78888 57766666654433
No 89
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=47.64 E-value=35 Score=25.88 Aligned_cols=28 Identities=11% Similarity=-0.244 Sum_probs=18.4
Q ss_pred CCcEEEEeCCCCchhHHHHHHHHHHhCCCC
Q 026102 11 ERRGVFWFIALQECPGAIITAYLMRTEQLS 40 (243)
Q Consensus 11 ~~~VLVHC~~G~sRS~avv~AyLm~~~~~~ 40 (243)
+..|+|+|..| +++++.++. +++..|.+
T Consensus 79 ~~~vv~~c~~g-~~~a~~~~~-~l~~~G~~ 106 (122)
T cd01448 79 DDTVVVYDDGG-GFFAARAWW-TLRYFGHE 106 (122)
T ss_pred CCEEEEECCCC-CccHHHHHH-HHHHcCCC
Confidence 56899999998 566566554 44554643
No 90
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=47.15 E-value=22 Score=29.31 Aligned_cols=29 Identities=21% Similarity=0.021 Sum_probs=21.0
Q ss_pred cCCcEEEEeCCCCchhHHHHHHHHHHhCCCC
Q 026102 10 EERRGVFWFIALQECPGAIITAYLMRTEQLS 40 (243)
Q Consensus 10 ~~~~VLVHC~~G~sRS~avv~AyLm~~~~~~ 40 (243)
++..|+|.|..|..||.. ++++++..|.+
T Consensus 115 ~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 456899999998878765 45666666643
No 91
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=46.39 E-value=9.9 Score=30.96 Aligned_cols=16 Identities=25% Similarity=0.675 Sum_probs=13.2
Q ss_pred cceEeCCCCCCCccce
Q 026102 199 EGKLSCAHCEARLGYF 214 (243)
Q Consensus 199 ~GKL~CPkC~~klGsf 214 (243)
.|++.||.|++.|=.+
T Consensus 121 ~~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 121 DGTFTCPRCGEELEED 136 (147)
T ss_pred CCcEECCCCCCEEEEc
Confidence 6789999999988543
No 92
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=45.61 E-value=7.2 Score=23.39 Aligned_cols=10 Identities=30% Similarity=0.654 Sum_probs=3.6
Q ss_pred eCCCCCCCcc
Q 026102 203 SCAHCEARLG 212 (243)
Q Consensus 203 ~CPkC~~klG 212 (243)
.||.|++..=
T Consensus 5 fC~~CG~~t~ 14 (32)
T PF09297_consen 5 FCGRCGAPTK 14 (32)
T ss_dssp B-TTT--BEE
T ss_pred ccCcCCcccc
Confidence 3555655553
No 93
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=45.34 E-value=11 Score=31.32 Aligned_cols=22 Identities=32% Similarity=0.756 Sum_probs=10.1
Q ss_pred CCCCCCCccceec---cCCCCC-CCCc
Q 026102 204 CAHCEARLGYFNW---SGIQCS-CGSW 226 (243)
Q Consensus 204 CPkC~~klGsf~w---~G~kCs-CG~~ 226 (243)
||+|+.|. +|+= .|-.|+ ||.-
T Consensus 112 Cp~c~~r~-tf~eA~~~~F~Cp~Cg~~ 137 (158)
T TIGR00373 112 CPNMCVRF-TFNEAMELNFTCPRCGAM 137 (158)
T ss_pred CCCCCcEe-eHHHHHHcCCcCCCCCCE
Confidence 55555544 2222 344554 5543
No 94
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=44.89 E-value=10 Score=26.86 Aligned_cols=20 Identities=20% Similarity=0.410 Sum_probs=16.6
Q ss_pred ceEeCCCCCCCccceeccCC
Q 026102 200 GKLSCAHCEARLGYFNWSGI 219 (243)
Q Consensus 200 GKL~CPkC~~klGsf~w~G~ 219 (243)
..-.||.|++.==+.+|.|+
T Consensus 17 d~e~CP~Cgs~~~te~W~G~ 36 (64)
T COG2093 17 DTEICPVCGSTDLTEEWFGL 36 (64)
T ss_pred CCccCCCCCCcccchhhccE
Confidence 34569999999779999995
No 95
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=44.23 E-value=29 Score=21.57 Aligned_cols=13 Identities=23% Similarity=0.485 Sum_probs=10.0
Q ss_pred ccceEeCCCCCCC
Q 026102 198 LEGKLSCAHCEAR 210 (243)
Q Consensus 198 ~~GKL~CPkC~~k 210 (243)
..+++.||+|+..
T Consensus 22 ~~~~vrC~~C~~~ 34 (37)
T PF13719_consen 22 GGRKVRCPKCGHV 34 (37)
T ss_pred CCcEEECCCCCcE
Confidence 4678999999864
No 96
>KOG3399 consensus Predicted Yippee-type zinc-binding protein [General function prediction only]
Probab=44.22 E-value=11 Score=30.14 Aligned_cols=24 Identities=17% Similarity=0.520 Sum_probs=21.4
Q ss_pred CcceeccccceecccccccccCCC
Q 026102 130 TPAYRCKKCRRVVALQENVVDHIP 153 (243)
Q Consensus 130 ~~~yrCrKCR~~Lf~~~~il~H~~ 153 (243)
...|+|+.|+.-|+..++++.+.-
T Consensus 13 ~~~y~C~~C~thla~~~dliSksf 36 (122)
T KOG3399|consen 13 HRLYSCAHCKTHLARHDDLISKSF 36 (122)
T ss_pred CceEeccCCcccccchhhcccccc
Confidence 468999999999999999998764
No 97
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=43.78 E-value=74 Score=30.36 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=28.0
Q ss_pred EEEeCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHHhCC
Q 026102 15 VFWFIALQECPGAIITAYLMRTEQLSSEGALESLRQSCE 53 (243)
Q Consensus 15 LVHC~~G~sRS~avv~AyLm~~~~~~~~~A~~~vr~~rp 53 (243)
..||. |-+..+- ++.++|+..++++.+|++.|.+...
T Consensus 55 ~~~Cf-~Cg~~Gd-~i~fv~~~~~~sf~eA~~~La~~~g 91 (415)
T TIGR01391 55 FYHCF-GCGAGGD-AIKFLMEIEGISFVEAVEELAKRAG 91 (415)
T ss_pred cEEEC-CCCCCCC-HHHHHHHHhCCCHHHHHHHHHHHcC
Confidence 47886 2333333 4789999999999999999987654
No 98
>PRK00420 hypothetical protein; Validated
Probab=43.62 E-value=14 Score=29.21 Aligned_cols=11 Identities=18% Similarity=0.564 Sum_probs=5.4
Q ss_pred cceEeCCCCCC
Q 026102 199 EGKLSCAHCEA 209 (243)
Q Consensus 199 ~GKL~CPkC~~ 209 (243)
+|+..||.|+.
T Consensus 38 ~g~~~Cp~Cg~ 48 (112)
T PRK00420 38 DGEVVCPVHGK 48 (112)
T ss_pred CCceECCCCCC
Confidence 44555555543
No 99
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=42.64 E-value=13 Score=26.21 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=15.2
Q ss_pred eCCCCCCCccceeccCC
Q 026102 203 SCAHCEARLGYFNWSGI 219 (243)
Q Consensus 203 ~CPkC~~klGsf~w~G~ 219 (243)
.||+|++.-=+-+|.|.
T Consensus 17 ~CP~Cgs~~~T~~W~G~ 33 (61)
T PRK08351 17 RCPVCGSRDLSDEWFDL 33 (61)
T ss_pred cCCCCcCCccccccccE
Confidence 49999999889999985
No 100
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=42.64 E-value=13 Score=24.27 Aligned_cols=13 Identities=23% Similarity=0.731 Sum_probs=10.7
Q ss_pred cceEeCCCCCCCc
Q 026102 199 EGKLSCAHCEARL 211 (243)
Q Consensus 199 ~GKL~CPkC~~kl 211 (243)
.+.+.||.|+.|+
T Consensus 17 ~~~irC~~CG~rI 29 (44)
T smart00659 17 KDVVRCRECGYRI 29 (44)
T ss_pred CCceECCCCCceE
Confidence 4678999999886
No 101
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=42.51 E-value=15 Score=38.87 Aligned_cols=34 Identities=21% Similarity=0.598 Sum_probs=27.2
Q ss_pred ccceEeCCCCCCCccceeccCCCCC-CCCcccCcee
Q 026102 198 LEGKLSCAHCEARLGYFNWSGIQCS-CGSWITPAFQ 232 (243)
Q Consensus 198 ~~GKL~CPkC~~klGsf~w~G~kCs-CG~~v~Paf~ 232 (243)
...+.-|.||++|-=.-=.+| +|. ||..+.+.++
T Consensus 1009 srQ~fRC~kC~~kYRR~PL~G-~C~kCGg~lilTV~ 1043 (1095)
T TIGR00354 1009 SRQEVRCTKCNTKYRRIPLVG-KCLKCGNNLTLTVS 1043 (1095)
T ss_pred hccceeecccCCccccCCCCC-cccccCCeEEEEEe
Confidence 456889999999988888888 895 9998866543
No 102
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=42.08 E-value=11 Score=24.44 Aligned_cols=13 Identities=31% Similarity=0.866 Sum_probs=10.1
Q ss_pred cccceEeCCCCCCC
Q 026102 197 ALEGKLSCAHCEAR 210 (243)
Q Consensus 197 ~~~GKL~CPkC~~k 210 (243)
|-+| ..||+|++.
T Consensus 15 W~~g-~~CP~Cg~~ 27 (46)
T PF12760_consen 15 WPDG-FVCPHCGST 27 (46)
T ss_pred CCCC-CCCCCCCCe
Confidence 4456 679999997
No 103
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=41.62 E-value=31 Score=26.82 Aligned_cols=30 Identities=7% Similarity=0.170 Sum_probs=20.1
Q ss_pred HHcCCcEEEEeCCCCchhHHHHHHHHHHhCCC
Q 026102 8 IGEERRGVFWFIALQECPGAIITAYLMRTEQL 39 (243)
Q Consensus 8 i~~~~~VLVHC~~G~sRS~avv~AyLm~~~~~ 39 (243)
+.++..|+|.|..|-.||..+ +++++..|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a--~~~L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSL--AWLLESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHH--HHHHHHcCC
Confidence 445568999998544576533 377777665
No 104
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=41.55 E-value=25 Score=27.54 Aligned_cols=29 Identities=17% Similarity=0.399 Sum_probs=18.0
Q ss_pred ccceEeCCCCCCCccceeccCCCCC-CCCc
Q 026102 198 LEGKLSCAHCEARLGYFNWSGIQCS-CGSW 226 (243)
Q Consensus 198 ~~GKL~CPkC~~klGsf~w~G~kCs-CG~~ 226 (243)
..++..|+.|+...-.-.+.-..|+ ||..
T Consensus 67 ~p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 96 (114)
T PRK03681 67 QEAECWCETCQQYVTLLTQRVRRCPQCHGD 96 (114)
T ss_pred eCcEEEcccCCCeeecCCccCCcCcCcCCC
Confidence 5678888888864433233335686 8854
No 105
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=40.98 E-value=6 Score=21.35 Aligned_cols=19 Identities=26% Similarity=0.735 Sum_probs=15.2
Q ss_pred eeccccceecccccccccC
Q 026102 133 YRCKKCRRVVALQENVVDH 151 (243)
Q Consensus 133 yrCrKCR~~Lf~~~~il~H 151 (243)
|.|..|.+..-+..++..|
T Consensus 1 y~C~~C~~~f~~~~~l~~H 19 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRH 19 (23)
T ss_dssp EEETTTTEEESSHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHH
Confidence 7899999988777776665
No 106
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=39.81 E-value=57 Score=23.89 Aligned_cols=27 Identities=4% Similarity=-0.080 Sum_probs=17.2
Q ss_pred CCcEEEEeCCCCchhHHHHHHHHHHhCCCC
Q 026102 11 ERRGVFWFIALQECPGAIITAYLMRTEQLS 40 (243)
Q Consensus 11 ~~~VLVHC~~G~sRS~avv~AyLm~~~~~~ 40 (243)
+.+|+|.|..|. ||... + ..+...|.+
T Consensus 58 ~~~vv~~c~~g~-rs~~~-~-~~l~~~G~~ 84 (101)
T cd01528 58 DKDIVVLCHHGG-RSMQV-A-QWLLRQGFE 84 (101)
T ss_pred CCeEEEEeCCCc-hHHHH-H-HHHHHcCCc
Confidence 678999999984 76444 3 333445543
No 107
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=39.51 E-value=16 Score=24.54 Aligned_cols=7 Identities=29% Similarity=1.018 Sum_probs=5.0
Q ss_pred eCCCCCC
Q 026102 203 SCAHCEA 209 (243)
Q Consensus 203 ~CPkC~~ 209 (243)
.||+|++
T Consensus 22 fCP~Cg~ 28 (50)
T PRK00432 22 FCPRCGS 28 (50)
T ss_pred cCcCCCc
Confidence 6777766
No 108
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=39.02 E-value=51 Score=23.57 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=19.1
Q ss_pred HHHHHcCCcEEEEeCCCCchhHHHHHHHHHHhCCC
Q 026102 5 ISLIGEERRGVFWFIALQECPGAIITAYLMRTEQL 39 (243)
Q Consensus 5 i~~i~~~~~VLVHC~~G~sRS~avv~AyLm~~~~~ 39 (243)
+..+.++..|+|+|..|. ||.. ++.+++..|.
T Consensus 50 ~~~~~~~~~ivv~c~~g~-~s~~--a~~~l~~~G~ 81 (96)
T cd01444 50 LGDLDRDRPVVVYCYHGN-SSAQ--LAQALREAGF 81 (96)
T ss_pred HhhcCCCCCEEEEeCCCC-hHHH--HHHHHHHcCC
Confidence 344556678999999664 4433 3444555554
No 109
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=38.88 E-value=16 Score=23.61 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=10.0
Q ss_pred eEeCCCCCCCcc
Q 026102 201 KLSCAHCEARLG 212 (243)
Q Consensus 201 KL~CPkC~~klG 212 (243)
.+.||.|++++=
T Consensus 21 ~~~Cp~CG~~~~ 32 (46)
T PRK00398 21 GVRCPYCGYRIL 32 (46)
T ss_pred ceECCCCCCeEE
Confidence 789999998763
No 110
>PRK01415 hypothetical protein; Validated
Probab=38.75 E-value=31 Score=30.86 Aligned_cols=29 Identities=7% Similarity=-0.153 Sum_probs=19.5
Q ss_pred HHcCCcEEEEeCCCCchhHHHHHHHHHHhCCC
Q 026102 8 IGEERRGVFWFIALQECPGAIITAYLMRTEQL 39 (243)
Q Consensus 8 i~~~~~VLVHC~~G~sRS~avv~AyLm~~~~~ 39 (243)
+.++++|+++|..|+ || ..++++|. ..|.
T Consensus 168 ~~k~k~Iv~yCtgGi-Rs-~kAa~~L~-~~Gf 196 (247)
T PRK01415 168 LLKGKKIAMVCTGGI-RC-EKSTSLLK-SIGY 196 (247)
T ss_pred hcCCCeEEEECCCCh-HH-HHHHHHHH-HcCC
Confidence 345678999999996 77 44456654 4454
No 111
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=38.68 E-value=30 Score=26.99 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=16.9
Q ss_pred cccceEeCCCCCCCccceeccCCCCC-CCCc
Q 026102 197 ALEGKLSCAHCEARLGYFNWSGIQCS-CGSW 226 (243)
Q Consensus 197 ~~~GKL~CPkC~~klGsf~w~G~kCs-CG~~ 226 (243)
+..++..|+.|+..-.. ......|+ ||..
T Consensus 66 ~vp~~~~C~~Cg~~~~~-~~~~~~CP~Cgs~ 95 (113)
T PRK12380 66 YKPAQAWCWDCSQVVEI-HQHDAQCPHCHGE 95 (113)
T ss_pred eeCcEEEcccCCCEEec-CCcCccCcCCCCC
Confidence 35678889999843322 11233586 8843
No 112
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=38.64 E-value=16 Score=31.00 Aligned_cols=12 Identities=25% Similarity=0.719 Sum_probs=6.4
Q ss_pred eEeCCCCCCCcc
Q 026102 201 KLSCAHCEARLG 212 (243)
Q Consensus 201 KL~CPkC~~klG 212 (243)
-..||.|++-|-
T Consensus 136 ~F~Cp~Cg~~L~ 147 (178)
T PRK06266 136 GFRCPQCGEMLE 147 (178)
T ss_pred CCcCCCCCCCCe
Confidence 355555555553
No 113
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=38.38 E-value=24 Score=26.64 Aligned_cols=31 Identities=29% Similarity=0.714 Sum_probs=19.6
Q ss_pred cceEeCCCCCCCccceec--------cCCCCC-CCCcccC
Q 026102 199 EGKLSCAHCEARLGYFNW--------SGIQCS-CGSWITP 229 (243)
Q Consensus 199 ~GKL~CPkC~~klGsf~w--------~G~kCs-CG~~v~P 229 (243)
.++=.||+|+.+|.-++. ..-+|. |++-+.+
T Consensus 31 ~~rS~C~~C~~~L~~~~lIPi~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 31 FPRSHCPHCGHPLSWWDLIPILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CCCCcCcCCCCcCcccccchHHHHHHhCCCCcccCCCCCh
Confidence 446678888888876542 333774 6766644
No 114
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=37.70 E-value=25 Score=38.38 Aligned_cols=25 Identities=28% Similarity=0.780 Sum_probs=14.5
Q ss_pred ceEeCCCCCCCccceeccCCCCC-CCCcccC
Q 026102 200 GKLSCAHCEARLGYFNWSGIQCS-CGSWITP 229 (243)
Q Consensus 200 GKL~CPkC~~klGsf~w~G~kCs-CG~~v~P 229 (243)
|...||+|++-.-. ..|+ ||+...|
T Consensus 666 ~~rkCPkCG~~t~~-----~fCP~CGs~te~ 691 (1337)
T PRK14714 666 GRRRCPSCGTETYE-----NRCPDCGTHTEP 691 (1337)
T ss_pred EEEECCCCCCcccc-----ccCcccCCcCCC
Confidence 55778888775421 1564 6666544
No 115
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=36.83 E-value=14 Score=26.94 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=5.9
Q ss_pred ccceEeCCCCCCC
Q 026102 198 LEGKLSCAHCEAR 210 (243)
Q Consensus 198 ~~GKL~CPkC~~k 210 (243)
...|+.||+|+.+
T Consensus 21 ~~~k~FCp~CGn~ 33 (73)
T PF08772_consen 21 DMTKQFCPKCGNA 33 (73)
T ss_dssp -SS--S-SSS--S
T ss_pred CCCceeCcccCCC
Confidence 3679999999875
No 116
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=36.76 E-value=35 Score=30.97 Aligned_cols=26 Identities=31% Similarity=0.192 Sum_probs=19.2
Q ss_pred CCCchhHHHHHHHHHHhCCCCHHHHHHH
Q 026102 20 ALQECPGAIITAYLMRTEQLSSEGALES 47 (243)
Q Consensus 20 ~G~sRS~avv~AyLm~~~~~~~~~A~~~ 47 (243)
=|+|||++-+.|-|+. |++-++|.++
T Consensus 166 PGiSRSG~TI~a~l~~--G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGLLL--GLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHHHc--CCCHHHHHHH
Confidence 4999998877775543 7888888543
No 117
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=36.31 E-value=26 Score=28.82 Aligned_cols=26 Identities=27% Similarity=0.767 Sum_probs=16.8
Q ss_pred cceEeCCCCCCCccceeccCC--CCC-CCC
Q 026102 199 EGKLSCAHCEARLGYFNWSGI--QCS-CGS 225 (243)
Q Consensus 199 ~GKL~CPkC~~klGsf~w~G~--kCs-CG~ 225 (243)
.|.+.|-+|+.++ .|+-.+. .|+ ||.
T Consensus 110 ~G~l~C~~Cg~~~-~~~~~~~l~~Cp~C~~ 138 (146)
T PF07295_consen 110 PGTLVCENCGHEV-ELTHPERLPPCPKCGH 138 (146)
T ss_pred CceEecccCCCEE-EecCCCcCCCCCCCCC
Confidence 6788888888877 4555443 554 554
No 118
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=36.16 E-value=8.5 Score=26.54 Aligned_cols=16 Identities=38% Similarity=0.841 Sum_probs=13.3
Q ss_pred ceeccccceecccccc
Q 026102 132 AYRCKKCRRVVALQEN 147 (243)
Q Consensus 132 ~yrCrKCR~~Lf~~~~ 147 (243)
.+||++|.++|+..+-
T Consensus 4 tiRC~~CnKlLa~a~~ 19 (60)
T COG4416 4 TIRCAKCNKLLAEAEG 19 (60)
T ss_pred eeehHHHhHHHHhccc
Confidence 5899999999987653
No 119
>KOG0856 consensus Predicted pilin-like transcription factor [Posttranslational modification, protein turnover, chaperones]
Probab=35.80 E-value=28 Score=28.57 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=20.6
Q ss_pred CCcceeccccceecccccccccCCC
Q 026102 129 RTPAYRCKKCRRVVALQENVVDHIP 153 (243)
Q Consensus 129 ~~~~yrCrKCR~~Lf~~~~il~H~~ 153 (243)
+...|.|-.|...||.++-=..+.-
T Consensus 51 e~GvY~C~~C~~pLykS~tKfdsgc 75 (146)
T KOG0856|consen 51 EEGVYVCAGCGTPLYKSTTKFDSGC 75 (146)
T ss_pred CCceEEEeecCCccccccccccCCC
Confidence 5679999999999999987666553
No 120
>PRK06835 DNA replication protein DnaC; Validated
Probab=35.75 E-value=20 Score=33.29 Aligned_cols=24 Identities=38% Similarity=0.975 Sum_probs=18.5
Q ss_pred cceEeCCCCCCCccceeccCCCCCCCC
Q 026102 199 EGKLSCAHCEARLGYFNWSGIQCSCGS 225 (243)
Q Consensus 199 ~GKL~CPkC~~klGsf~w~G~kCsCG~ 225 (243)
+-+-.||+|+.. |-+ .|.+|+|=.
T Consensus 96 ~~~y~Cp~C~dt-G~i--~~~~C~C~~ 119 (329)
T PRK06835 96 EMKYTCPKCKDT-GFI--NGKKCSCYK 119 (329)
T ss_pred CCCCCCCCCCCC-CCc--CCccccchh
Confidence 446689999998 755 577999954
No 121
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=35.37 E-value=22 Score=38.75 Aligned_cols=9 Identities=33% Similarity=0.826 Sum_probs=4.5
Q ss_pred eecccccee
Q 026102 133 YRCKKCRRV 141 (243)
Q Consensus 133 yrCrKCR~~ 141 (243)
++|.+|+..
T Consensus 668 rkCPkCG~~ 676 (1337)
T PRK14714 668 RRCPSCGTE 676 (1337)
T ss_pred EECCCCCCc
Confidence 455555543
No 122
>COG1933 Archaeal DNA polymerase II, large subunit [DNA replication, recombination, and repair]
Probab=35.19 E-value=18 Score=32.26 Aligned_cols=39 Identities=21% Similarity=0.597 Sum_probs=29.6
Q ss_pred cccceEeCCCCCCCccceeccCCCCC-CCCcccCceeeecCCc
Q 026102 197 ALEGKLSCAHCEARLGYFNWSGIQCS-CGSWITPAFQLHKSRV 238 (243)
Q Consensus 197 ~~~GKL~CPkC~~klGsf~w~G~kCs-CG~~v~Paf~l~~skV 238 (243)
-..-+..|-+|++|+|.--.+| +|. ||..+ -.-+++.+|
T Consensus 163 f~rq~~rc~~c~~k~rr~pl~g-~c~kcg~~~--~ltv~~g~v 202 (253)
T COG1933 163 FTRQEFRCVKCNTKFRRPPLDG-KCPICGGKI--VLTVSKGAI 202 (253)
T ss_pred hhhheeehHhhhhhhcCCCccc-cccccCCeE--EEEEeccHH
Confidence 3455889999999999999999 897 99855 344455443
No 123
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=34.94 E-value=39 Score=31.11 Aligned_cols=27 Identities=11% Similarity=0.178 Sum_probs=18.3
Q ss_pred cCCcEEEEeCCCCchhHHHHHHHHHHhCCC
Q 026102 10 EERRGVFWFIALQECPGAIITAYLMRTEQL 39 (243)
Q Consensus 10 ~~~~VLVHC~~G~sRS~avv~AyLm~~~~~ 39 (243)
++.+|+|+|..|+ || +.+++||.. .|.
T Consensus 170 kdk~IvvyC~~G~-Rs-~~aa~~L~~-~Gf 196 (314)
T PRK00142 170 KDKKVVMYCTGGI-RC-EKASAWMKH-EGF 196 (314)
T ss_pred CcCeEEEECCCCc-HH-HHHHHHHHH-cCC
Confidence 4568999999997 77 444556554 354
No 124
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=34.89 E-value=57 Score=24.93 Aligned_cols=28 Identities=11% Similarity=-0.014 Sum_probs=17.9
Q ss_pred HcCCcEEEEeCCCCchhHHHHHHHHHHhCCC
Q 026102 9 GEERRGVFWFIALQECPGAIITAYLMRTEQL 39 (243)
Q Consensus 9 ~~~~~VLVHC~~G~sRS~avv~AyLm~~~~~ 39 (243)
..+.+|+|+|..|. ||..++ .++...|.
T Consensus 62 ~~~~~ivv~C~~G~-rs~~aa--~~L~~~G~ 89 (117)
T cd01522 62 GKDRPVLLLCRSGN-RSIAAA--EAAAQAGF 89 (117)
T ss_pred CCCCeEEEEcCCCc-cHHHHH--HHHHHCCC
Confidence 35568999999985 776543 33444454
No 125
>PRK04023 DNA polymerase II large subunit; Validated
Probab=34.74 E-value=23 Score=37.80 Aligned_cols=32 Identities=25% Similarity=0.630 Sum_probs=18.8
Q ss_pred cceEeCCCCCCCccceeccCCCCC-CCCcccCce
Q 026102 199 EGKLSCAHCEARLGYFNWSGIQCS-CGSWITPAF 231 (243)
Q Consensus 199 ~GKL~CPkC~~klGsf~w~G~kCs-CG~~v~Paf 231 (243)
..+.-|.||++|-=.-=.+| +|. ||..+.+.+
T Consensus 1035 rQ~fRC~kC~~kYRR~PL~G-~C~kCGg~lilTV 1067 (1121)
T PRK04023 1035 RQEFRCTKCGAKYRRPPLSG-KCPKCGGNLILTV 1067 (1121)
T ss_pred ccceeecccCcccccCCCCC-cCccCCCeEEEEE
Confidence 44566666666655555566 663 666664443
No 126
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=34.26 E-value=31 Score=27.00 Aligned_cols=28 Identities=14% Similarity=0.355 Sum_probs=17.4
Q ss_pred ccceEeCCCCCCCccceeccCCCC-CCCCc
Q 026102 198 LEGKLSCAHCEARLGYFNWSGIQC-SCGSW 226 (243)
Q Consensus 198 ~~GKL~CPkC~~klGsf~w~G~kC-sCG~~ 226 (243)
..++..|+.|+... ........| +||..
T Consensus 67 ~p~~~~C~~Cg~~~-~~~~~~~~CP~Cgs~ 95 (115)
T TIGR00100 67 EPVECECEDCSEEV-SPEIDLYRCPKCHGI 95 (115)
T ss_pred eCcEEEcccCCCEE-ecCCcCccCcCCcCC
Confidence 46788899998433 232234568 48854
No 127
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=33.86 E-value=22 Score=28.83 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=10.6
Q ss_pred ccceEeCCCCCCC
Q 026102 198 LEGKLSCAHCEAR 210 (243)
Q Consensus 198 ~~GKL~CPkC~~k 210 (243)
..|+++||.|+-+
T Consensus 41 KdG~v~CPvC~~~ 53 (131)
T COG1645 41 KDGEVFCPVCGYR 53 (131)
T ss_pred eCCeEECCCCCce
Confidence 3789999999853
No 128
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=33.80 E-value=41 Score=29.09 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHh
Q 026102 30 TAYLMRTEQLSSEGALESLRQS 51 (243)
Q Consensus 30 ~AyLm~~~~~~~~~A~~~vr~~ 51 (243)
=+.||..+|++-+||++.+|..
T Consensus 151 KglLM~~~g~sE~EAy~~lR~~ 172 (194)
T COG3707 151 KGLLMKRRGLSEEEAYKLLRRT 172 (194)
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 4579999999999999999964
No 129
>COG5629 Predicted metal-binding protein [Function unknown]
Probab=33.51 E-value=21 Score=32.41 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=23.3
Q ss_pred ccceEeCCCCCCCcccee---------cc-CCCCCCCCcccCceee
Q 026102 198 LEGKLSCAHCEARLGYFN---------WS-GIQCSCGSWITPAFQL 233 (243)
Q Consensus 198 ~~GKL~CPkC~~klGsf~---------w~-G~kCsCG~~v~Paf~l 233 (243)
-+-||+|.+|+|+||--| |. ..-|+=.+.+-|.+-|
T Consensus 166 pNfklhCsfCnA~lGlpn~~s~~kl~r~~k~~I~~g~tKihP~~di 211 (321)
T COG5629 166 PNFKLHCSFCNARLGLPNDSSIRKLFRYNKEVIPNGCTKIHPHEDL 211 (321)
T ss_pred CCcceeeehhhhhhCCCCchhhhhhhhcchheecCCCcccCchHHH
Confidence 457999999999998644 42 3345433455565544
No 130
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=33.43 E-value=11 Score=26.46 Aligned_cols=12 Identities=50% Similarity=1.281 Sum_probs=9.2
Q ss_pred Ccceecccccee
Q 026102 130 TPAYRCKKCRRV 141 (243)
Q Consensus 130 ~~~yrCrKCR~~ 141 (243)
...|||.|||+.
T Consensus 36 ~~I~Rc~~CRk~ 47 (61)
T COG2888 36 VEIYRCAKCRKL 47 (61)
T ss_pred eeeehhhhHHHc
Confidence 567888888863
No 131
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=32.83 E-value=52 Score=25.21 Aligned_cols=28 Identities=4% Similarity=-0.139 Sum_probs=18.3
Q ss_pred HcCCcEEEEeCCCCchhHHHHHHHHHHhCCC
Q 026102 9 GEERRGVFWFIALQECPGAIITAYLMRTEQL 39 (243)
Q Consensus 9 ~~~~~VLVHC~~G~sRS~avv~AyLm~~~~~ 39 (243)
..++.|+|+|..|. ||...+ ..++..|.
T Consensus 70 ~~~~~ivv~C~~G~-rs~~aa--~~L~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTAV--RKLKELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHHHHH--HHHHHcCC
Confidence 44678999999996 775333 23455555
No 132
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=32.07 E-value=51 Score=29.57 Aligned_cols=26 Identities=35% Similarity=0.189 Sum_probs=19.6
Q ss_pred CCCchhHHHHHHHHHHhCCCCHHHHHHH
Q 026102 20 ALQECPGAIITAYLMRTEQLSSEGALES 47 (243)
Q Consensus 20 ~G~sRS~avv~AyLm~~~~~~~~~A~~~ 47 (243)
=|+|||++.+.+-++ .|++.++|.++
T Consensus 160 PGiSRSG~Ti~~~l~--~G~~r~~A~~f 185 (259)
T PF02673_consen 160 PGISRSGATITAGLL--LGLDREEAARF 185 (259)
T ss_pred CCcChHHHHHHHHHH--CCCCHHHHHHH
Confidence 599999888877544 37888888655
No 133
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=31.44 E-value=53 Score=24.03 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=18.1
Q ss_pred cCCcEEEEeCCCCchhHHHHHHHHHHhCCC
Q 026102 10 EERRGVFWFIALQECPGAIITAYLMRTEQL 39 (243)
Q Consensus 10 ~~~~VLVHC~~G~sRS~avv~AyLm~~~~~ 39 (243)
++..|+|+|..|. ||.. +++++...|.
T Consensus 65 ~~~~ivv~c~~g~-~s~~--~~~~l~~~G~ 91 (106)
T cd01519 65 KDKELIFYCKAGV-RSKA--AAELARSLGY 91 (106)
T ss_pred CCCeEEEECCCcH-HHHH--HHHHHHHcCC
Confidence 3568999999986 6533 3455666664
No 134
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.88 E-value=26 Score=35.05 Aligned_cols=26 Identities=31% Similarity=0.793 Sum_probs=20.5
Q ss_pred eEeCCCCCCCccceeccCCCC-CCCCcccCc
Q 026102 201 KLSCAHCEARLGYFNWSGIQC-SCGSWITPA 230 (243)
Q Consensus 201 KL~CPkC~~klGsf~w~G~kC-sCG~~v~Pa 230 (243)
+-.||+|+..-+ .|-|| .||.-..|.
T Consensus 142 ~g~cp~cg~~~a----rGD~Ce~Cg~~~~P~ 168 (558)
T COG0143 142 EGTCPKCGGEDA----RGDQCENCGRTLDPT 168 (558)
T ss_pred eccCCCcCcccc----CcchhhhccCcCCch
Confidence 457999997666 58999 699988774
No 135
>PF09082 DUF1922: Domain of unknown function (DUF1922); InterPro: IPR015166 Members of this family consist of a beta-sheet region followed by an alpha-helix and an unstructured C terminus. The beta-sheet region contains a CXCX...XCXC sequence with Cys residues located in two proximal loops and pointing towards each other. This precise function of this set of bacterial proteins is, as yet, unknown []. ; PDB: 1GH9_A.
Probab=30.74 E-value=22 Score=25.63 Aligned_cols=19 Identities=26% Similarity=0.667 Sum_probs=12.1
Q ss_pred ceeccccceecccccccccC
Q 026102 132 AYRCKKCRRVVALQENVVDH 151 (243)
Q Consensus 132 ~yrCrKCR~~Lf~~~~il~H 151 (243)
.||| +|++.|...+..-.|
T Consensus 3 ifrC-~Cgr~lya~e~~kTk 21 (68)
T PF09082_consen 3 IFRC-DCGRYLYAKEGAKTK 21 (68)
T ss_dssp EEEE-TTS--EEEETT-SEE
T ss_pred EEEe-cCCCEEEecCCccee
Confidence 6899 799999887765433
No 136
>KOG4784 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.71 E-value=40 Score=31.60 Aligned_cols=87 Identities=15% Similarity=0.326 Sum_probs=48.8
Q ss_pred CCCcceeccccceeccccccccc--CCCCC----CcchhhhhhhccCCCC--CCCCCCC-C---ceeee---Ccccccch
Q 026102 128 NRTPAYRCKKCRRVVALQENVVD--HIPGE----GETAFEWHKRKSGNRF--NRSDESE-C---SSIFV---EPLRWMTA 192 (243)
Q Consensus 128 ~~~~~yrCrKCR~~Lf~~~~il~--H~~~~----~~~~~~~~~~~~~~~~--~~~~~~~-C---~~~Fi---epl~Wm~~ 192 (243)
.....++|.+|+..+-.+.++.. --|.+ ....|..++-...+.. .-..+.. | .+||+ +..+|...
T Consensus 99 ~~~~s~~C~~C~e~ii~~r~~~~l~~lPSe~W~el~d~w~CH~~~p~~~s~~tl~PsE~~l~lG~sY~lin~~t~e~~~~ 178 (348)
T KOG4784|consen 99 DEPCSFHCLNCKEEIIGQRSYRSLNELPSENWTELPDCWSCHNDEPKNKSSLTLYPSENELYLGDSYLLINLATGEGVKT 178 (348)
T ss_pred CCCceeEeccCcceEeccchhhhhhhcChhhhhhcCceecccCCccccccccccccCcCceEeeccEEEEEcccccceec
Confidence 45789999999999987766632 22221 1111222220000000 1122333 3 47777 23466665
Q ss_pred hhcccccceEeCCCCCCCccceecc
Q 026102 193 VEEGALEGKLSCAHCEARLGYFNWS 217 (243)
Q Consensus 193 ~~~~~~~GKL~CPkC~~klGsf~w~ 217 (243)
.. -.-++.|.+|.+-||.+...
T Consensus 179 ~~---~~d~~~C~rC~~~lg~~~~~ 200 (348)
T KOG4784|consen 179 IA---GNDRVLCSRCKRCLGLFITK 200 (348)
T ss_pred cC---CCCchhhhhhHhhcCccccc
Confidence 32 36799999999999999763
No 137
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=30.26 E-value=28 Score=29.63 Aligned_cols=12 Identities=17% Similarity=-0.011 Sum_probs=7.1
Q ss_pred cceeccccceec
Q 026102 131 PAYRCKKCRRVV 142 (243)
Q Consensus 131 ~~yrCrKCR~~L 142 (243)
....|+|||...
T Consensus 60 ~li~~~k~rd~~ 71 (176)
T COG1675 60 GLISYRKKRDEE 71 (176)
T ss_pred CceEEEeecccC
Confidence 355677777544
No 138
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=30.02 E-value=31 Score=19.78 Aligned_cols=10 Identities=20% Similarity=0.740 Sum_probs=7.8
Q ss_pred cceEeCCCCC
Q 026102 199 EGKLSCAHCE 208 (243)
Q Consensus 199 ~GKL~CPkC~ 208 (243)
.-...||+|+
T Consensus 14 ~v~f~CPnCG 23 (24)
T PF07754_consen 14 AVPFPCPNCG 23 (24)
T ss_pred CceEeCCCCC
Confidence 4478899997
No 139
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=30.01 E-value=57 Score=23.65 Aligned_cols=28 Identities=14% Similarity=-0.137 Sum_probs=17.6
Q ss_pred HcCCcEEEEeCCCCchhHHHHHHHHHHhCCC
Q 026102 9 GEERRGVFWFIALQECPGAIITAYLMRTEQL 39 (243)
Q Consensus 9 ~~~~~VLVHC~~G~sRS~avv~AyLm~~~~~ 39 (243)
.++..|+|+|..|. ||+. ++.+| +..|.
T Consensus 54 ~~~~~ivv~c~~g~-~s~~-~~~~l-~~~G~ 81 (96)
T cd01529 54 GRATRYVLTCDGSL-LARF-AAQEL-LALGG 81 (96)
T ss_pred CCCCCEEEEeCChH-HHHH-HHHHH-HHcCC
Confidence 44568999998774 6644 34444 55554
No 140
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=29.70 E-value=29 Score=33.48 Aligned_cols=44 Identities=18% Similarity=0.460 Sum_probs=30.2
Q ss_pred eeeCcccccchhhcccccceEeCCCCCCCccceeccCCCCC-CCCcc
Q 026102 182 IFVEPLRWMTAVEEGALEGKLSCAHCEARLGYFNWSGIQCS-CGSWI 227 (243)
Q Consensus 182 ~Fiepl~Wm~~~~~~~~~GKL~CPkC~~klGsf~w~G~kCs-CG~~v 227 (243)
+.||.+.=..-. . ...-+-.||.|+.+.=|--=+|.+|. ||.-.
T Consensus 333 ~n~ek~~v~~l~-~-~~~~~p~Cp~Cg~~m~S~G~~g~rC~kCg~~~ 377 (421)
T COG1571 333 LNLEKFQVLKLA-R-YERVNPVCPRCGGRMKSAGRNGFRCKKCGTRA 377 (421)
T ss_pred eeEEEEEEEEee-e-eEEcCCCCCccCCchhhcCCCCcccccccccC
Confidence 666665433321 1 34556689999999877655689997 99865
No 141
>PRK11032 hypothetical protein; Provisional
Probab=29.66 E-value=39 Score=28.32 Aligned_cols=26 Identities=35% Similarity=0.848 Sum_probs=20.2
Q ss_pred cceEeCCCCCCCccceeccCC--CCC-CCC
Q 026102 199 EGKLSCAHCEARLGYFNWSGI--QCS-CGS 225 (243)
Q Consensus 199 ~GKL~CPkC~~klGsf~w~G~--kCs-CG~ 225 (243)
-|.|.|-+|+-++ .|...|. .|+ ||.
T Consensus 122 ~G~LvC~~Cg~~~-~~~~p~~i~pCp~C~~ 150 (160)
T PRK11032 122 LGNLVCEKCHHHL-AFYTPEVLPLCPKCGH 150 (160)
T ss_pred cceEEecCCCCEE-EecCCCcCCCCCCCCC
Confidence 6899999999998 7777555 674 664
No 142
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=29.30 E-value=58 Score=29.39 Aligned_cols=26 Identities=35% Similarity=0.256 Sum_probs=18.9
Q ss_pred CCCchhHHHHHHHHHHhCCCCHHHHHHH
Q 026102 20 ALQECPGAIITAYLMRTEQLSSEGALES 47 (243)
Q Consensus 20 ~G~sRS~avv~AyLm~~~~~~~~~A~~~ 47 (243)
=|+|||++-+.+-|+ .|++.++|.++
T Consensus 164 PGiSRSG~TI~~~l~--~G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGLL--LGLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 599999887777544 47788887543
No 143
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=29.16 E-value=12 Score=20.93 Aligned_cols=21 Identities=14% Similarity=0.572 Sum_probs=16.8
Q ss_pred ceeccccceecccccccccCC
Q 026102 132 AYRCKKCRRVVALQENVVDHI 152 (243)
Q Consensus 132 ~yrCrKCR~~Lf~~~~il~H~ 152 (243)
.|.|..|.+..-+..+++.|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~ 21 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHK 21 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHH
T ss_pred CCCCCccCCccCChhHHHHHh
Confidence 379999999887777777775
No 144
>PRK11827 hypothetical protein; Provisional
Probab=29.09 E-value=31 Score=24.18 Aligned_cols=15 Identities=27% Similarity=0.964 Sum_probs=12.0
Q ss_pred ceEeCCCCCCCcccee
Q 026102 200 GKLSCAHCEARLGYFN 215 (243)
Q Consensus 200 GKL~CPkC~~klGsf~ 215 (243)
.-|.||.|+.+| .|+
T Consensus 7 eILaCP~ckg~L-~~~ 21 (60)
T PRK11827 7 EIIACPVCNGKL-WYN 21 (60)
T ss_pred hheECCCCCCcC-eEc
Confidence 468999999998 454
No 145
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=29.00 E-value=24 Score=29.42 Aligned_cols=12 Identities=42% Similarity=0.996 Sum_probs=10.2
Q ss_pred ceeccccceecc
Q 026102 132 AYRCKKCRRVVA 143 (243)
Q Consensus 132 ~yrCrKCR~~Lf 143 (243)
.|||+||+-.|-
T Consensus 140 ~YrC~~C~gkL~ 151 (156)
T COG3091 140 VYRCGKCGGKLV 151 (156)
T ss_pred eEEeccCCceEE
Confidence 799999997764
No 146
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=28.89 E-value=45 Score=25.11 Aligned_cols=13 Identities=15% Similarity=-0.051 Sum_probs=11.5
Q ss_pred CCcEEEEeCCCCc
Q 026102 11 ERRGVFWFIALQE 23 (243)
Q Consensus 11 ~~~VLVHC~~G~s 23 (243)
..+|||-|.+|+|
T Consensus 3 ~~~ILl~C~~G~s 15 (95)
T TIGR00853 3 ETNILLLCAAGMS 15 (95)
T ss_pred ccEEEEECCCchh
Confidence 4589999999998
No 147
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=28.75 E-value=32 Score=23.71 Aligned_cols=10 Identities=20% Similarity=0.664 Sum_probs=7.4
Q ss_pred eEeCCCCCCC
Q 026102 201 KLSCAHCEAR 210 (243)
Q Consensus 201 KL~CPkC~~k 210 (243)
=|.||.|+.|
T Consensus 4 Wi~CP~CgnK 13 (55)
T PF14205_consen 4 WILCPICGNK 13 (55)
T ss_pred EEECCCCCCc
Confidence 4678888865
No 148
>PHA02325 hypothetical protein
Probab=28.73 E-value=29 Score=24.80 Aligned_cols=17 Identities=47% Similarity=1.048 Sum_probs=12.8
Q ss_pred eCCCCCCCc--cceeccCC
Q 026102 203 SCAHCEARL--GYFNWSGI 219 (243)
Q Consensus 203 ~CPkC~~kl--Gsf~w~G~ 219 (243)
.||||+|+- |.--|+|.
T Consensus 5 ~CPkC~A~WldgqhYWsgT 23 (72)
T PHA02325 5 ICPKCGARWLDGQHYWSGT 23 (72)
T ss_pred ccCccCCEeEcceeeeccC
Confidence 499999974 77777653
No 149
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=28.69 E-value=59 Score=29.14 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=18.7
Q ss_pred CCCchhHHHHHHHHHHhCCCCHHHHHHH
Q 026102 20 ALQECPGAIITAYLMRTEQLSSEGALES 47 (243)
Q Consensus 20 ~G~sRS~avv~AyLm~~~~~~~~~A~~~ 47 (243)
=|+|||++-+.|-|+ .|++-++|.++
T Consensus 160 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGLF--IGLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 499999887777544 36778887543
No 150
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=28.67 E-value=76 Score=22.95 Aligned_cols=26 Identities=12% Similarity=-0.144 Sum_probs=16.6
Q ss_pred CCcEEEEeCCCCchhHHHHHHHHHHhCCC
Q 026102 11 ERRGVFWFIALQECPGAIITAYLMRTEQL 39 (243)
Q Consensus 11 ~~~VLVHC~~G~sRS~avv~AyLm~~~~~ 39 (243)
+..|+|+|..|. ||.. ++.+| ...|.
T Consensus 56 ~~~iv~~c~~G~-rs~~-aa~~L-~~~G~ 81 (95)
T cd01534 56 GARIVLADDDGV-RADM-TASWL-AQMGW 81 (95)
T ss_pred CCeEEEECCCCC-hHHH-HHHHH-HHcCC
Confidence 457999999987 6643 33333 55554
No 151
>PF13790 DUF4182: Domain of unknown function (DUF4182)
Probab=28.27 E-value=32 Score=21.98 Aligned_cols=18 Identities=28% Similarity=0.761 Sum_probs=15.9
Q ss_pred cceEeCCCCCCCccceec
Q 026102 199 EGKLSCAHCEARLGYFNW 216 (243)
Q Consensus 199 ~GKL~CPkC~~klGsf~w 216 (243)
.|.|.|..|+.-+++|.=
T Consensus 1 MGtIvCq~C~~~Id~~e~ 18 (38)
T PF13790_consen 1 MGTIVCQHCNETIDHFET 18 (38)
T ss_pred CCEEEeccccceeeeecC
Confidence 378999999999999974
No 152
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=27.87 E-value=29 Score=22.08 Aligned_cols=17 Identities=29% Similarity=0.517 Sum_probs=12.4
Q ss_pred ccceEeCCCCCCCccce
Q 026102 198 LEGKLSCAHCEARLGYF 214 (243)
Q Consensus 198 ~~GKL~CPkC~~klGsf 214 (243)
..|.+.|++|+.-|...
T Consensus 16 ~~g~~vC~~CG~Vl~e~ 32 (43)
T PF08271_consen 16 ERGELVCPNCGLVLEEN 32 (43)
T ss_dssp TTTEEEETTT-BBEE-T
T ss_pred CCCeEECCCCCCEeecc
Confidence 58999999999877543
No 153
>PF02943 FeThRed_B: Ferredoxin thioredoxin reductase catalytic beta chain; InterPro: IPR004209 Ferredoxin thioredoxin reductase is a [4FE-4S] protein present in organisms performing oxygenic photosynthesis, and plays an important role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin), regulating enzymes by reduction of specific disulphide groups. It catalyses the light-dependent activation of several photosynthetis enzymes. Ferredoxin thioredoxin reductase is a heterodimer of subunit alpha and subunit beta. Subunit alpha is the variable subunit, and beta is the catalytic chain []. The structure of the beta subunit has been determined and found to fold around the FeS cluster [].; GO: 0008937 ferredoxin-NAD(P) reductase activity, 0055114 oxidation-reduction process; PDB: 2PUK_E 2PVD_A 2PVG_A 2PUO_A 2PU9_A 1DJ7_A 2PVO_A.
Probab=27.78 E-value=10 Score=29.74 Aligned_cols=29 Identities=28% Similarity=0.801 Sum_probs=13.3
Q ss_pred ceEeCCCCC-CCccceeccCCCCCCCCcccCce
Q 026102 200 GKLSCAHCE-ARLGYFNWSGIQCSCGSWITPAF 231 (243)
Q Consensus 200 GKL~CPkC~-~klGsf~w~G~kCsCG~~v~Paf 231 (243)
.++.|| |. .+---+ -.| .|-||-+++|.+
T Consensus 62 ~~iiCP-C~~~r~~~~-~~G-~ChC~Lf~~~e~ 91 (108)
T PF02943_consen 62 RDIICP-CVPYREDDI-EYG-HCHCGLFVSPEY 91 (108)
T ss_dssp -TTBSS--HHHHHH---------TTSSSB-TTS
T ss_pred CCeecC-CHHHHhhcc-ccc-cceEeeeECccc
Confidence 455566 55 443333 344 699999999987
No 154
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=27.65 E-value=29 Score=24.77 Aligned_cols=11 Identities=18% Similarity=0.748 Sum_probs=7.6
Q ss_pred ceEeCCCCCCC
Q 026102 200 GKLSCAHCEAR 210 (243)
Q Consensus 200 GKL~CPkC~~k 210 (243)
+...||||+.+
T Consensus 3 ~~~kCpKCgn~ 13 (68)
T COG3478 3 NAFKCPKCGNT 13 (68)
T ss_pred ccccCCCcCCc
Confidence 44459999764
No 155
>PRK05667 dnaG DNA primase; Validated
Probab=27.65 E-value=2.3e+02 Score=28.49 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=30.4
Q ss_pred EEEEeCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCC
Q 026102 14 GVFWFIALQECPGAIITAYLMRTEQLSSEGALESLRQSCESVCP 57 (243)
Q Consensus 14 VLVHC~~G~sRS~avv~AyLm~~~~~~~~~A~~~vr~~rp~~~p 57 (243)
-+.||.. -+.++ =++.++|...++++.+|+..+.+..-...|
T Consensus 56 ~~~~CF~-Cg~~G-d~i~fv~~~~~~sf~eAv~~La~~~gi~~~ 97 (580)
T PRK05667 56 QFYHCFG-CGAGG-DVIKFLMEYEGLSFVEAVEELADRAGIELP 97 (580)
T ss_pred CeEEECC-CCCCC-CHHHHHHHHhCCCHHHHHHHHHHHhCCCCC
Confidence 3679963 33343 357899999999999999999877644333
No 156
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=27.52 E-value=91 Score=22.50 Aligned_cols=28 Identities=11% Similarity=-0.179 Sum_probs=17.1
Q ss_pred CCcEEEEeCCCCchhHHHHHHHHHHhCCC
Q 026102 11 ERRGVFWFIALQECPGAIITAYLMRTEQL 39 (243)
Q Consensus 11 ~~~VLVHC~~G~sRS~avv~AyLm~~~~~ 39 (243)
+.+|+|.|..|...++..+ +..++..|.
T Consensus 50 ~~~ivl~c~~G~~~~s~~a-a~~L~~~G~ 77 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRA-ARRLSELGY 77 (92)
T ss_pred CCeEEEEeCCCCchHHHHH-HHHHHHcCc
Confidence 5689999998864434444 444444453
No 157
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=27.36 E-value=54 Score=31.00 Aligned_cols=17 Identities=6% Similarity=-0.124 Sum_probs=13.7
Q ss_pred HHHHHcCCcEEEEeCCC
Q 026102 5 ISLIGEERRGVFWFIAL 21 (243)
Q Consensus 5 i~~i~~~~~VLVHC~~G 21 (243)
.++|..+..||.||.+|
T Consensus 161 ~~~I~dg~~ILThcnsg 177 (363)
T PRK05772 161 LEKLNDGDTVLTQCNAG 177 (363)
T ss_pred HhhcCCCCEEEEecCCc
Confidence 56777777899999887
No 158
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=26.71 E-value=19 Score=25.19 Aligned_cols=12 Identities=50% Similarity=1.176 Sum_probs=9.3
Q ss_pred Ccceecccccee
Q 026102 130 TPAYRCKKCRRV 141 (243)
Q Consensus 130 ~~~yrCrKCR~~ 141 (243)
...+||.|||+.
T Consensus 34 ~~I~RC~~CRk~ 45 (59)
T PRK14890 34 VIIYRCEKCRKQ 45 (59)
T ss_pred eeEeechhHHhc
Confidence 448899999974
No 159
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=26.48 E-value=39 Score=37.26 Aligned_cols=32 Identities=25% Similarity=0.640 Sum_probs=26.7
Q ss_pred ccceEeCCCCCCCccceeccCCCCC-CCCcccCce
Q 026102 198 LEGKLSCAHCEARLGYFNWSGIQCS-CGSWITPAF 231 (243)
Q Consensus 198 ~~GKL~CPkC~~klGsf~w~G~kCs-CG~~v~Paf 231 (243)
...+.-| ||++|-=.--.+| +|. ||..+.+.+
T Consensus 1539 srQ~~RC-kC~~kyRR~PL~G-~C~kCGg~~ilTV 1571 (1627)
T PRK14715 1539 SRQEFRC-KCGAKYRRVPLKG-KCPKCGSKLILTV 1571 (1627)
T ss_pred hccceee-cCCCccccCCCCC-cCcccCCeEEEEE
Confidence 4568899 9999988888899 996 999996654
No 160
>smart00355 ZnF_C2H2 zinc finger.
Probab=26.06 E-value=13 Score=19.71 Aligned_cols=20 Identities=30% Similarity=0.858 Sum_probs=14.8
Q ss_pred eeccccceecccccccccCC
Q 026102 133 YRCKKCRRVVALQENVVDHI 152 (243)
Q Consensus 133 yrCrKCR~~Lf~~~~il~H~ 152 (243)
|.|..|........++..|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~ 20 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHM 20 (26)
T ss_pred CCCCCCcchhCCHHHHHHHH
Confidence 57889998877776666664
No 161
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=26.02 E-value=65 Score=23.29 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=18.1
Q ss_pred HcCCcEEEEeCCCCchhHHHHHHHHHHhCCC
Q 026102 9 GEERRGVFWFIALQECPGAIITAYLMRTEQL 39 (243)
Q Consensus 9 ~~~~~VLVHC~~G~sRS~avv~AyLm~~~~~ 39 (243)
..+.+|+|+|..|. ||.. +++++...|.
T Consensus 59 ~~~~~ivv~c~~g~-~s~~--~~~~l~~~G~ 86 (103)
T cd01447 59 AEDKPFVFYCASGW-RSAL--AGKTLQDMGL 86 (103)
T ss_pred CCCCeEEEEcCCCC-cHHH--HHHHHHHcCh
Confidence 45568999998884 6643 3455555553
No 162
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=26.00 E-value=14 Score=19.39 Aligned_cols=19 Identities=16% Similarity=0.602 Sum_probs=12.8
Q ss_pred eeccccceecccccccccC
Q 026102 133 YRCKKCRRVVALQENVVDH 151 (243)
Q Consensus 133 yrCrKCR~~Lf~~~~il~H 151 (243)
|.|..|.....+..++..|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H 19 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQH 19 (24)
T ss_dssp EE-SSTS-EESSHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHH
Confidence 6899999888777766655
No 163
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=25.86 E-value=35 Score=20.88 Aligned_cols=10 Identities=20% Similarity=0.667 Sum_probs=5.9
Q ss_pred EeCCCCCCCc
Q 026102 202 LSCAHCEARL 211 (243)
Q Consensus 202 L~CPkC~~kl 211 (243)
-.||||+.-+
T Consensus 2 hlcpkcgvgv 11 (36)
T PF09151_consen 2 HLCPKCGVGV 11 (36)
T ss_dssp -B-TTTSSSB
T ss_pred ccCCccCceE
Confidence 3699998654
No 164
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=25.61 E-value=89 Score=29.16 Aligned_cols=17 Identities=18% Similarity=-0.029 Sum_probs=13.9
Q ss_pred HHHHHcCC----cEEEEeCCC
Q 026102 5 ISLIGEER----RGVFWFIAL 21 (243)
Q Consensus 5 i~~i~~~~----~VLVHC~~G 21 (243)
.++|..+. .||.||..|
T Consensus 137 ~~~I~dg~~~~~~ILThcnsg 157 (331)
T TIGR00512 137 AALIKKGVAAPLRVLTHCNTG 157 (331)
T ss_pred HHHhcCCCCCCceEEeecCCc
Confidence 56777777 899999987
No 165
>PRK05320 rhodanese superfamily protein; Provisional
Probab=25.50 E-value=69 Score=28.58 Aligned_cols=24 Identities=4% Similarity=-0.178 Sum_probs=17.2
Q ss_pred cCCcEEEEeCCCCchhHHHHHHHHHH
Q 026102 10 EERRGVFWFIALQECPGAIITAYLMR 35 (243)
Q Consensus 10 ~~~~VLVHC~~G~sRS~avv~AyLm~ 35 (243)
++++|+++|..|+ || ..++++|..
T Consensus 174 kdk~IvvyC~~G~-Rs-~~Aa~~L~~ 197 (257)
T PRK05320 174 AGKTVVSFCTGGI-RC-EKAAIHMQE 197 (257)
T ss_pred CCCeEEEECCCCH-HH-HHHHHHHHH
Confidence 4678999999996 76 445566643
No 166
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=25.39 E-value=40 Score=27.06 Aligned_cols=31 Identities=29% Similarity=0.689 Sum_probs=20.0
Q ss_pred ccccceEeCCCCCC----Ccccee--ccCCCC-CCCCc
Q 026102 196 GALEGKLSCAHCEA----RLGYFN--WSGIQC-SCGSW 226 (243)
Q Consensus 196 ~~~~GKL~CPkC~~----klGsf~--w~G~kC-sCG~~ 226 (243)
+...++++||-|++ |+|.+. .+.-+| +|+.-
T Consensus 25 ~~~~~~~~cP~C~s~~~~k~g~~~~~~qRyrC~~C~~t 62 (129)
T COG3677 25 RMQITKVNCPRCKSSNVVKIGGIRRGHQRYKCKSCGST 62 (129)
T ss_pred hhhcccCcCCCCCccceeeECCccccccccccCCcCcc
Confidence 45678999998875 334433 355577 57753
No 167
>PF13695 zf-3CxxC: Zinc-binding domain
Probab=25.36 E-value=73 Score=24.06 Aligned_cols=35 Identities=26% Similarity=0.621 Sum_probs=24.3
Q ss_pred ccceEeCCCCCCCccc--------------eec--cCCCC-CCCCcccCcee
Q 026102 198 LEGKLSCAHCEARLGY--------------FNW--SGIQC-SCGSWITPAFQ 232 (243)
Q Consensus 198 ~~GKL~CPkC~~klGs--------------f~w--~G~kC-sCG~~v~Paf~ 232 (243)
..|++.|++|+-.=+| ++- -|.+| +|+....|-|.
T Consensus 2 ~~grF~C~~C~~~W~S~~v~i~f~~~~~g~v~~rv~~Q~C~~C~~~~~P~~~ 53 (98)
T PF13695_consen 2 AFGRFQCSKCSRGWTSAKVWILFHMYRGGQVNMRVFGQRCKKCNPLERPYFS 53 (98)
T ss_pred cEEEEECCCCCCCCccCEEEEEEEEcCCCeEEEEEECCCCCCCCCCCCccCc
Confidence 3577888887544332 332 68899 69999999885
No 168
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=25.23 E-value=43 Score=22.50 Aligned_cols=33 Identities=21% Similarity=0.548 Sum_probs=20.0
Q ss_pred CCCCceeeeC-cccccchhhcccccceEeCCCCCCC
Q 026102 176 ESECSSIFVE-PLRWMTAVEEGALEGKLSCAHCEAR 210 (243)
Q Consensus 176 ~~~C~~~Fie-pl~Wm~~~~~~~~~GKL~CPkC~~k 210 (243)
...|+.-+++ |...+.....+ ++-+.||+|+.=
T Consensus 22 ~~~C~gC~~~l~~~~~~~i~~~--~~i~~Cp~CgRi 55 (56)
T PF02591_consen 22 GGTCSGCHMELPPQELNEIRKG--DEIVFCPNCGRI 55 (56)
T ss_pred CCccCCCCEEcCHHHHHHHHcC--CCeEECcCCCcc
Confidence 4567655553 44444443332 678999999853
No 169
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=24.95 E-value=30 Score=21.36 Aligned_cols=9 Identities=33% Similarity=0.907 Sum_probs=4.1
Q ss_pred eCCCCCCCc
Q 026102 203 SCAHCEARL 211 (243)
Q Consensus 203 ~CPkC~~kl 211 (243)
+||+|+..|
T Consensus 2 fC~~CG~~l 10 (34)
T PF14803_consen 2 FCPQCGGPL 10 (34)
T ss_dssp B-TTT--B-
T ss_pred ccccccChh
Confidence 589998887
No 170
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=24.88 E-value=2.8e+02 Score=20.25 Aligned_cols=35 Identities=26% Similarity=0.250 Sum_probs=22.0
Q ss_pred CCCchh--HHHHHHH-HHHhCCCCHHHHHHHHHHhCCC
Q 026102 20 ALQECP--GAIITAY-LMRTEQLSSEGALESLRQSCES 54 (243)
Q Consensus 20 ~G~sRS--~avv~Ay-Lm~~~~~~~~~A~~~vr~~rp~ 54 (243)
.|+++. .++--|| +++..+.++++|++.+++..+.
T Consensus 26 ~Gfs~~~i~~l~~ayr~l~~~~~~~~~a~~~l~~~~~~ 63 (83)
T PF13720_consen 26 RGFSKEEISALRRAYRILFRSGLTLEEALEELEEEYPD 63 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccC
Confidence 455554 3444566 4455678999999999987654
No 171
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=24.76 E-value=41 Score=21.66 Aligned_cols=10 Identities=40% Similarity=1.182 Sum_probs=8.7
Q ss_pred cceEeCCCCC
Q 026102 199 EGKLSCAHCE 208 (243)
Q Consensus 199 ~GKL~CPkC~ 208 (243)
+|++.||.|+
T Consensus 32 ~g~~~Cv~C~ 41 (41)
T PF06677_consen 32 DGKIYCVSCG 41 (41)
T ss_pred CCCEECCCCC
Confidence 7899999985
No 172
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=24.39 E-value=43 Score=20.94 Aligned_cols=12 Identities=50% Similarity=1.185 Sum_probs=9.4
Q ss_pred CCCcceeccccc
Q 026102 128 NRTPAYRCKKCR 139 (243)
Q Consensus 128 ~~~~~yrCrKCR 139 (243)
...-.|||+.||
T Consensus 25 ~G~qryrC~~C~ 36 (36)
T PF03811_consen 25 SGHQRYRCKDCR 36 (36)
T ss_pred CCCEeEecCcCC
Confidence 345689999997
No 173
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=24.24 E-value=35 Score=32.24 Aligned_cols=36 Identities=31% Similarity=0.857 Sum_probs=27.3
Q ss_pred CCCCCceeeeCcc-------cccchhh-----cccccceEeCCCCCCC
Q 026102 175 DESECSSIFVEPL-------RWMTAVE-----EGALEGKLSCAHCEAR 210 (243)
Q Consensus 175 ~~~~C~~~Fiepl-------~Wm~~~~-----~~~~~GKL~CPkC~~k 210 (243)
....|..-|-.|| .|-..-- +.|+.||-.||-|.+|
T Consensus 302 ~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~ 349 (358)
T PF10272_consen 302 NEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAK 349 (358)
T ss_pred cCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccc
Confidence 3458999999999 4544421 2389999999999987
No 174
>PHA03338 US22 family homolog; Provisional
Probab=23.85 E-value=1.1e+02 Score=28.34 Aligned_cols=50 Identities=8% Similarity=-0.051 Sum_probs=33.8
Q ss_pred HHHHHHcCCc-EE-EEeCCCCchhHHHHHHH-HHHhCCCCHHHHHHHHHHhCC
Q 026102 4 LISLIGEERR-GV-FWFIALQECPGAIITAY-LMRTEQLSSEGALESLRQSCE 53 (243)
Q Consensus 4 ~i~~i~~~~~-VL-VHC~~G~sRS~avv~Ay-Lm~~~~~~~~~A~~~vr~~rp 53 (243)
+.+|+..+-+ |. +||.+|+.=|+-++-.| ++..++..++....+|.+.+-
T Consensus 147 ~eeFa~vGlR~vypihC~agl~esgill~R~w~~ir~~~g~dav~RFviR~HG 199 (344)
T PHA03338 147 AEDFAAIGFRFFYPIHCRAGLGEIGILLGRLWLLIRQGADADAVARFVVRAHG 199 (344)
T ss_pred HHHHHhhcceeEEEeccccccchhHHHHHHHHHHHHhhcCcchhhhhhhhccC
Confidence 3567666644 44 89999998887666555 444556677777777776654
No 175
>KOG1088 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.74 E-value=43 Score=26.75 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=12.3
Q ss_pred ccccceEeCCCCCCC
Q 026102 196 GALEGKLSCAHCEAR 210 (243)
Q Consensus 196 ~~~~GKL~CPkC~~k 210 (243)
...+|+|.||.|+-+
T Consensus 93 ~v~EG~l~CpetG~v 107 (124)
T KOG1088|consen 93 DVIEGELVCPETGRV 107 (124)
T ss_pred hhccceEecCCCCcE
Confidence 357899999999864
No 176
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=23.67 E-value=59 Score=25.19 Aligned_cols=25 Identities=12% Similarity=0.025 Sum_probs=15.6
Q ss_pred HcCCcEEEEeC-CCCchhHHHHHHHHHH
Q 026102 9 GEERRGVFWFI-ALQECPGAIITAYLMR 35 (243)
Q Consensus 9 ~~~~~VLVHC~-~G~sRS~avv~AyLm~ 35 (243)
.++..|+|||. .| .||+. ++.+|..
T Consensus 66 ~~~~~vv~yC~~sg-~rs~~-aa~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRGPR-MARHLRN 91 (121)
T ss_pred CCCCEEEEECCCcc-ccHHH-HHHHHHH
Confidence 34568999997 55 47654 3444443
No 177
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=23.34 E-value=1.2e+02 Score=30.71 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=29.1
Q ss_pred CcEEEEeCCCCchhHHHHHHHHHH---hCCCCHHHHHHHHHH
Q 026102 12 RRGVFWFIALQECPGAIITAYLMR---TEQLSSEGALESLRQ 50 (243)
Q Consensus 12 ~~VLVHC~~G~sRS~avv~AyLm~---~~~~~~~~A~~~vr~ 50 (243)
...+|||.-|. +++++++||+ ..++++++|+..++.
T Consensus 161 ~pdviH~ND~H---tal~~~el~r~l~~~~~~~~~a~~~~~~ 199 (601)
T TIGR02094 161 DPDVYHLNEGH---AAFVTLERIRELIAQGLSFEEAWEAVRK 199 (601)
T ss_pred CceEEEeCCch---HHHHHHHHHHHHHHcCCCHHHHHHhcCC
Confidence 46899999988 7999999875 357889998876654
No 178
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.68 E-value=65 Score=25.25 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=16.8
Q ss_pred ccceEeCCCCCCCccceec-cCCCCC-CCCc
Q 026102 198 LEGKLSCAHCEARLGYFNW-SGIQCS-CGSW 226 (243)
Q Consensus 198 ~~GKL~CPkC~~klGsf~w-~G~kCs-CG~~ 226 (243)
..++..|+.|+.. ..... .-.+|+ ||..
T Consensus 68 vp~~~~C~~Cg~~-~~~~~~~~~~CP~Cgs~ 97 (117)
T PRK00564 68 EKVELECKDCSHV-FKPNALDYGVCEKCHSK 97 (117)
T ss_pred cCCEEEhhhCCCc-cccCCccCCcCcCCCCC
Confidence 5678889888843 23332 223585 8854
No 179
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=22.66 E-value=1.1e+02 Score=22.15 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=17.0
Q ss_pred CCcEEEEeCCCCchhHHHH--HHHHHHhCCC
Q 026102 11 ERRGVFWFIALQECPGAII--TAYLMRTEQL 39 (243)
Q Consensus 11 ~~~VLVHC~~G~sRS~avv--~AyLm~~~~~ 39 (243)
+..|+|+|..|..-..+.. ++|++...|.
T Consensus 67 ~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~ 97 (113)
T PF00581_consen 67 DKDIVFYCSSGWRSGSAAAARVAWILKKLGF 97 (113)
T ss_dssp TSEEEEEESSSCHHHHHHHHHHHHHHHHTTT
T ss_pred cccceeeeecccccchhHHHHHHHHHHHcCC
Confidence 4479999977764443222 3455666554
No 180
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.56 E-value=3.8e+02 Score=21.57 Aligned_cols=50 Identities=24% Similarity=0.356 Sum_probs=39.6
Q ss_pred chhHHHHHHHHHHhCC-CCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCC
Q 026102 23 ECPGAIITAYLMRTEQ-LSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGF 73 (243)
Q Consensus 23 sRS~avv~AyLm~~~~-~~~~~A~~~vr~~rp~~~pn~~f~~qL~~~~~~~~ 73 (243)
.+.-..++.+|....+ .|.++.+..++...|.+.+ .-..+-|..|++.|.
T Consensus 20 T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~isl-aTVYr~L~~l~e~Gl 70 (145)
T COG0735 20 TPQRLAVLELLLEADGHLSAEELYEELREEGPGISL-ATVYRTLKLLEEAGL 70 (145)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCH-hHHHHHHHHHHHCCC
Confidence 4555677888887655 7999999999999998885 456678888888875
No 181
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=22.53 E-value=42 Score=23.87 Aligned_cols=17 Identities=18% Similarity=0.431 Sum_probs=14.8
Q ss_pred eCCCCCCCccceeccCC
Q 026102 203 SCAHCEARLGYFNWSGI 219 (243)
Q Consensus 203 ~CPkC~~klGsf~w~G~ 219 (243)
.||.|++.==+-+|.|+
T Consensus 19 ~Cp~Cgs~~~S~~w~G~ 35 (64)
T PRK06393 19 TCPVHGDEKTTTEWFGF 35 (64)
T ss_pred cCCCCCCCcCCcCcceE
Confidence 79999998668899996
No 182
>PRK04860 hypothetical protein; Provisional
Probab=22.48 E-value=46 Score=27.73 Aligned_cols=18 Identities=22% Similarity=0.853 Sum_probs=13.3
Q ss_pred Ccceeccccceecccccc
Q 026102 130 TPAYRCKKCRRVVALQEN 147 (243)
Q Consensus 130 ~~~yrCrKCR~~Lf~~~~ 147 (243)
...|+|++|++.|...++
T Consensus 141 ~~~YrC~~C~~~l~~~~~ 158 (160)
T PRK04860 141 EAVYRCRRCGETLVFKGE 158 (160)
T ss_pred CccEECCCCCceeEEecc
Confidence 456999999988865443
No 183
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=22.41 E-value=93 Score=29.14 Aligned_cols=22 Identities=9% Similarity=-0.158 Sum_probs=16.7
Q ss_pred HHHHHcCCcEEEEeCCCCchhH
Q 026102 5 ISLIGEERRGVFWFIALQECPG 26 (243)
Q Consensus 5 i~~i~~~~~VLVHC~~G~sRS~ 26 (243)
.++|..+..||.||..|..+++
T Consensus 142 ~~~I~~g~~ILThc~sg~lat~ 163 (339)
T PRK06036 142 AKLLEDGDTVLTHCNAGRLACV 163 (339)
T ss_pred HHHccCCCEEEEecCCcccccc
Confidence 4666666789999999976653
No 184
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=22.38 E-value=43 Score=22.56 Aligned_cols=13 Identities=38% Similarity=0.973 Sum_probs=8.6
Q ss_pred Ccceeccccceec
Q 026102 130 TPAYRCKKCRRVV 142 (243)
Q Consensus 130 ~~~yrCrKCR~~L 142 (243)
...|+|-+|.+.+
T Consensus 4 ~~~Y~C~~Cg~~~ 16 (49)
T COG1996 4 MMEYKCARCGREV 16 (49)
T ss_pred eEEEEhhhcCCee
Confidence 4567777777655
No 185
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=22.26 E-value=1e+02 Score=23.08 Aligned_cols=30 Identities=10% Similarity=-0.033 Sum_probs=18.2
Q ss_pred HHcCCcEEEEeCCCCc-hhHHHHHHHHHHhCCC
Q 026102 8 IGEERRGVFWFIALQE-CPGAIITAYLMRTEQL 39 (243)
Q Consensus 8 i~~~~~VLVHC~~G~s-RS~avv~AyLm~~~~~ 39 (243)
+..+..|+|+|..|.. ||+. + +..++..|.
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~-~-a~~l~~~G~ 91 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATK-A-ALKLAELGF 91 (110)
T ss_pred CCCCCeEEEEECCCCCchHHH-H-HHHHHHcCC
Confidence 4456789999998863 4433 2 234445454
No 186
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=22.22 E-value=1.1e+02 Score=23.07 Aligned_cols=26 Identities=8% Similarity=0.012 Sum_probs=15.9
Q ss_pred CCcEEEEeCCCCchhHHHHHHHHHHhCCC
Q 026102 11 ERRGVFWFIALQECPGAIITAYLMRTEQL 39 (243)
Q Consensus 11 ~~~VLVHC~~G~sRS~avv~AyLm~~~~~ 39 (243)
+..|+|+|..|. ||... +. +++..|.
T Consensus 58 ~~~vvlyC~~G~-rS~~a-a~-~L~~~G~ 83 (101)
T TIGR02981 58 NDTVKLYCNAGR-QSGMA-KD-ILLDMGY 83 (101)
T ss_pred CCeEEEEeCCCH-HHHHH-HH-HHHHcCC
Confidence 347889999995 66444 33 3344453
No 187
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.18 E-value=69 Score=25.77 Aligned_cols=10 Identities=40% Similarity=0.976 Sum_probs=6.1
Q ss_pred cceEeCCCCC
Q 026102 199 EGKLSCAHCE 208 (243)
Q Consensus 199 ~GKL~CPkC~ 208 (243)
..+..|+.|+
T Consensus 68 p~~~~C~~CG 77 (135)
T PRK03824 68 EAVLKCRNCG 77 (135)
T ss_pred ceEEECCCCC
Confidence 3566666666
No 188
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=21.86 E-value=1.7e+02 Score=20.70 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHh
Q 026102 26 GAIITAYLMRTEQLSSEGALESLRQS 51 (243)
Q Consensus 26 ~avv~AyLm~~~~~~~~~A~~~vr~~ 51 (243)
+|=++-||.++ |++|.+|...|-+.
T Consensus 4 ATdlAD~LVr~-GipFR~AH~iVg~~ 28 (70)
T PF14698_consen 4 ATDLADYLVRK-GIPFREAHHIVGRL 28 (70)
T ss_dssp HHHHHHHHHHT-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 45567788888 99999999887653
No 189
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=21.69 E-value=33 Score=23.23 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=15.7
Q ss_pred CcceeccccceecccccccccCCCC
Q 026102 130 TPAYRCKKCRRVVALQENVVDHIPG 154 (243)
Q Consensus 130 ~~~yrCrKCR~~Lf~~~~il~H~~~ 154 (243)
...|+|.+|....--+=|+.-|+.-
T Consensus 19 ~~~y~C~~C~~~FC~dCD~fiHE~L 43 (51)
T PF07975_consen 19 SSRYRCPKCKNHFCIDCDVFIHETL 43 (51)
T ss_dssp -EEE--TTTT--B-HHHHHTTTTTS
T ss_pred CCeEECCCCCCccccCcChhhhccc
Confidence 6799999999988777788888753
No 190
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=21.61 E-value=44 Score=29.84 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=23.8
Q ss_pred ccccceEeCCCCCCCccceec-cCCCC-CCCCcccC
Q 026102 196 GALEGKLSCAHCEARLGYFNW-SGIQC-SCGSWITP 229 (243)
Q Consensus 196 ~~~~GKL~CPkC~~klGsf~w-~G~kC-sCG~~v~P 229 (243)
.|....-+||.|++++-...- ....| +||...-|
T Consensus 94 ~w~~~~~fC~~CG~~~~~~~~~~~~~C~~c~~~~yp 129 (256)
T PRK00241 94 EFYRSHRFCGYCGHPMHPSKTEWAMLCPHCRERYYP 129 (256)
T ss_pred HHhhcCccccccCCCCeecCCceeEECCCCCCEECC
Confidence 466778899999999865433 33478 49976643
No 191
>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A.
Probab=21.60 E-value=38 Score=23.76 Aligned_cols=31 Identities=35% Similarity=0.747 Sum_probs=13.8
Q ss_pred ccceEeCCCCCCCcc-ceeccCCCCC-CCCccc
Q 026102 198 LEGKLSCAHCEARLG-YFNWSGIQCS-CGSWIT 228 (243)
Q Consensus 198 ~~GKL~CPkC~~klG-sf~w~G~kCs-CG~~v~ 228 (243)
....|.|-.|++|== .|-|-|.||+ ||.+-|
T Consensus 27 ~~v~IlCNDC~~~s~v~fH~lg~KC~~C~SYNT 59 (61)
T PF14599_consen 27 KKVWILCNDCNAKSEVPFHFLGHKCSHCGSYNT 59 (61)
T ss_dssp -EEEEEESSS--EEEEE--TT----TTTS---E
T ss_pred CEEEEECCCCCCccceeeeHhhhcCCCCCCccc
Confidence 356899999988632 4777999995 998743
No 192
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=21.53 E-value=22 Score=31.81 Aligned_cols=22 Identities=23% Similarity=0.560 Sum_probs=10.5
Q ss_pred cccccceEeCCCCCCC-ccceec
Q 026102 195 EGALEGKLSCAHCEAR-LGYFNW 216 (243)
Q Consensus 195 ~~~~~GKL~CPkC~~k-lGsf~w 216 (243)
+.|+....+||+|+++ |-.|.=
T Consensus 25 E~Wv~~n~yCP~Cg~~~L~~f~N 47 (254)
T PF06044_consen 25 EDWVAENMYCPNCGSKPLSKFEN 47 (254)
T ss_dssp HHHHHHH---TTT--SS-EE---
T ss_pred HHHHHHCCcCCCCCChhHhhccC
Confidence 4577889999999999 877754
No 193
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=21.46 E-value=40 Score=22.00 Aligned_cols=9 Identities=33% Similarity=1.143 Sum_probs=6.9
Q ss_pred eCCCCCCCc
Q 026102 203 SCAHCEARL 211 (243)
Q Consensus 203 ~CPkC~~kl 211 (243)
.||.|+++.
T Consensus 1 ~CP~Cg~~a 9 (47)
T PF04606_consen 1 RCPHCGSKA 9 (47)
T ss_pred CcCCCCCee
Confidence 489998864
No 194
>KOG2691 consensus RNA polymerase II subunit 9 [Transcription]
Probab=21.43 E-value=1.2e+02 Score=23.95 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=19.7
Q ss_pred CCCCcceeccccceecccccccccCCC
Q 026102 127 DNRTPAYRCKKCRRVVALQENVVDHIP 153 (243)
Q Consensus 127 ~~~~~~yrCrKCR~~Lf~~~~il~H~~ 153 (243)
.+....|.||.|..+-+..+.-+.-.+
T Consensus 21 ed~~L~laCrnCd~ve~A~s~~vY~~~ 47 (113)
T KOG2691|consen 21 EDRILLLACRNCDYVEEADSSRVYVNE 47 (113)
T ss_pred cccEEEEEecCCcceEecCCcceEcCC
Confidence 346789999999988777776665433
No 195
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=20.75 E-value=49 Score=27.31 Aligned_cols=64 Identities=11% Similarity=0.067 Sum_probs=46.6
Q ss_pred HcCCcEEEEeCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCCCCC
Q 026102 9 GEERRGVFWFIALQECPGAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGFKVNR 77 (243)
Q Consensus 9 ~~~~~VLVHC~~G~sRS~avv~AyLm~~~~~~~~~A~~~vr~~rp~~~pn~~f~~qL~~~~~~~~~~~~ 77 (243)
....+|+|-|-.|-+=.-++++|-.+...|+...= --..|.-..++.+..|++.++.++.++..
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 86 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV-----YLVGPPEKLSEDAKQQLEILKKMGIKIIE 86 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE-----EEEESSSSTSHHHHHHHHHHHHTT-EEES
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE-----EEEeccccCCHHHHHHHHHHHhcCCcEee
Confidence 34568999999999989889988888888876331 12234457889999999999999876543
No 196
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=20.29 E-value=57 Score=20.31 Aligned_cols=25 Identities=24% Similarity=0.515 Sum_probs=17.6
Q ss_pred EeCCCCCCCccceeccCCCCC-CCCcc
Q 026102 202 LSCAHCEARLGYFNWSGIQCS-CGSWI 227 (243)
Q Consensus 202 L~CPkC~~klGsf~w~G~kCs-CG~~v 227 (243)
..|-.|+..|.... .|.+|+ |+..+
T Consensus 12 ~~C~~C~~~i~~~~-~~~~C~~C~~~~ 37 (49)
T smart00109 12 TKCCVCRKSIWGSF-QGLRCSWCKVKC 37 (49)
T ss_pred CCccccccccCcCC-CCcCCCCCCchH
Confidence 45777888887654 688886 65543
No 197
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=20.22 E-value=1.8e+02 Score=23.05 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCCHHHH---HHHHHHhCCCCCCCHHHHHHHHHHHHcCC
Q 026102 27 AIITAYLMRTEQLSSEGA---LESLRQSCESVCPNDGFLEQLKMFEEMGF 73 (243)
Q Consensus 27 avv~AyLm~~~~~~~~~A---~~~vr~~rp~~~pn~~f~~qL~~~~~~~~ 73 (243)
||+.|| ..+-.+..| +.++.+++| +.....|..+|..|-....
T Consensus 57 AIv~sf---~~n~~i~~al~~vd~fs~~Y~-I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 57 AIVHSF---GYNGDIFSALKLVDFFSRKYP-IPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HHHHHH---HhcccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhc
Confidence 555665 223456666 556678888 7777999999999976543
No 198
>PF06174 DUF987: Protein of unknown function (DUF987); InterPro: IPR009329 This is a family of bacterial proteins that are related to the hypothetical protein YeeT.
Probab=20.19 E-value=43 Score=23.71 Aligned_cols=11 Identities=36% Similarity=1.177 Sum_probs=9.9
Q ss_pred cceeccCCCCC
Q 026102 212 GYFNWSGIQCS 222 (243)
Q Consensus 212 Gsf~w~G~kCs 222 (243)
|.|.|.|+-|.
T Consensus 27 GkY~W~Gs~~h 37 (66)
T PF06174_consen 27 GKYQWHGSVCH 37 (66)
T ss_pred ccceeeccccc
Confidence 78999999996
No 199
>PHA00626 hypothetical protein
Probab=20.05 E-value=42 Score=23.33 Aligned_cols=26 Identities=31% Similarity=0.707 Sum_probs=16.3
Q ss_pred eCCCCCCC----ccce-eccCC-CC-CCCCccc
Q 026102 203 SCAHCEAR----LGYF-NWSGI-QC-SCGSWIT 228 (243)
Q Consensus 203 ~CPkC~~k----lGsf-~w~G~-kC-sCG~~v~ 228 (243)
.||+|++. -|.- .|+.. +| .||..-+
T Consensus 2 ~CP~CGS~~Ivrcg~cr~~snrYkCkdCGY~ft 34 (59)
T PHA00626 2 SCPKCGSGNIAKEKTMRGWSDDYVCCDCGYNDS 34 (59)
T ss_pred CCCCCCCceeeeeceecccCcceEcCCCCCeec
Confidence 69999983 3332 34444 77 5887654
Done!