Query 026103
Match_columns 243
No_of_seqs 261 out of 1368
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 05:40:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026103.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026103hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 2.2E-25 7.5E-30 160.6 5.9 60 66-125 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 88.1 0.33 1.1E-05 35.6 2.9 28 62-91 3-31 (77)
3 1u3e_M HNH homing endonuclease 72.2 0.58 2E-05 38.3 -0.7 39 67-108 109-147 (174)
4 3jtz_A Integrase; four strande 72.1 7.7 0.00026 28.5 5.5 44 70-113 28-75 (88)
5 1z1b_A Integrase; protein-DNA 69.2 5.5 0.00019 34.3 4.8 41 69-113 15-55 (356)
6 3ju0_A Phage integrase; four s 55.8 18 0.00063 27.5 5.0 44 70-113 28-75 (108)
7 1kcq_A Gelsolin, brevin, ADF, 24.4 1E+02 0.0036 22.4 4.6 36 77-112 28-63 (104)
8 2ftc_I Mitochondrial ribosomal 24.3 1E+02 0.0036 23.7 4.7 37 77-115 79-115 (118)
9 1svq_A Severin; actin-binding; 24.1 90 0.0031 23.3 4.3 34 79-112 40-73 (114)
10 1x60_A Sporulation-specific N- 23.7 44 0.0015 22.9 2.3 21 89-109 46-66 (79)
11 2bn8_A CEDA, cell division act 23.1 37 0.0013 24.7 1.7 38 64-104 37-74 (87)
12 1uta_A FTSN, MSGA, cell divisi 21.7 79 0.0027 21.9 3.3 22 88-109 45-66 (81)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.91 E-value=2.2e-25 Score=160.57 Aligned_cols=60 Identities=47% Similarity=0.738 Sum_probs=56.9
Q ss_pred ceeEeEECCCCeEEEEEeecCC-CeEEeccCCCCHHHHHHHHHHHHHHhcCCCccCCCCCC
Q 026103 66 IFRGVRMRNNNKWVCELREPNK-QTRIWLGTYPSPEMAARAHDVAALALRGKSACLNFADS 125 (243)
Q Consensus 66 ~yrGVr~r~~GkW~AeIr~~~~-~kri~LGtf~t~EeAA~AyD~Aa~~~~G~~a~~NFp~s 125 (243)
+||||++|++|||+|+|++|.+ +++||||+|+|+||||+|||.|+++++|..+++|||++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 5999988889999999999975 79999999999999999999999999999999999975
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=88.11 E-value=0.33 Score=35.62 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=21.9
Q ss_pred CCCCceeEe-EECCCCeEEEEEeecCCCeEE
Q 026103 62 TRHPIFRGV-RMRNNNKWVCELREPNKQTRI 91 (243)
Q Consensus 62 ~~~s~yrGV-r~r~~GkW~AeIr~~~~~kri 91 (243)
+..|+|.|| +....+.|+|.-.+ ++++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence 567999999 66677999999998 55543
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=72.22 E-value=0.58 Score=38.27 Aligned_cols=39 Identities=10% Similarity=0.008 Sum_probs=28.9
Q ss_pred eeEeEECCCCeEEEEEeecCCCeEEeccCCCCHHHHHHHHHH
Q 026103 67 FRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMAARAHDV 108 (243)
Q Consensus 67 yrGVr~r~~GkW~AeIr~~~~~kri~LGtf~t~EeAA~AyD~ 108 (243)
++||.....++|.+.|.. . +.++||.|.|.+|||++|.+
T Consensus 109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~Gv 147 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELGL 147 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHTC
T ss_pred eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHCc
Confidence 466632334568888887 4 56789999999999999643
No 4
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=72.11 E-value=7.7 Score=28.46 Aligned_cols=44 Identities=27% Similarity=0.441 Sum_probs=30.7
Q ss_pred eEECCCC--eEEEEEeecCCCeEEeccCCC--CHHHHHHHHHHHHHHh
Q 026103 70 VRMRNNN--KWVCELREPNKQTRIWLGTYP--SPEMAARAHDVAALAL 113 (243)
Q Consensus 70 Vr~r~~G--kW~AeIr~~~~~kri~LGtf~--t~EeAA~AyD~Aa~~~ 113 (243)
++-++.| .|+-+.+..++.+++-||.|+ |.++|....+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 3555554 499998886667789999997 4777776666555444
No 5
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=69.21 E-value=5.5 Score=34.28 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=29.2
Q ss_pred EeEECCCCeEEEEEeecCCCeEEeccCCCCHHHHHHHHHHHHHHh
Q 026103 69 GVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMAARAHDVAALAL 113 (243)
Q Consensus 69 GVr~r~~GkW~AeIr~~~~~kri~LGtf~t~EeAA~AyD~Aa~~~ 113 (243)
||+.++.|.|..+.+. .||++.+|. |..+|......+...+
T Consensus 15 ~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 5766777899877654 788899996 8888776655544433
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=55.76 E-value=18 Score=27.46 Aligned_cols=44 Identities=30% Similarity=0.367 Sum_probs=29.5
Q ss_pred eEECCCC--eEEEEEeecCCCeEEeccCCCC--HHHHHHHHHHHHHHh
Q 026103 70 VRMRNNN--KWVCELREPNKQTRIWLGTYPS--PEMAARAHDVAALAL 113 (243)
Q Consensus 70 Vr~r~~G--kW~AeIr~~~~~kri~LGtf~t--~EeAA~AyD~Aa~~~ 113 (243)
++-++.| .|+-+.+..++.+++-||.|+. ..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 3555554 4999888866667888999974 666666555544433
No 7
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=24.39 E-value=1e+02 Score=22.43 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=28.8
Q ss_pred eEEEEEeecCCCeEEeccCCCCHHHHHHHHHHHHHH
Q 026103 77 KWVCELREPNKQTRIWLGTYPSPEMAARAHDVAALA 112 (243)
Q Consensus 77 kW~AeIr~~~~~kri~LGtf~t~EeAA~AyD~Aa~~ 112 (243)
.--+.|-+..+.-.+|.|...+..|...|-+.|...
T Consensus 28 s~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~i 63 (104)
T 1kcq_A 28 NGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGI 63 (104)
T ss_dssp TTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 334677776677889999999999999998887543
No 8
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=24.28 E-value=1e+02 Score=23.69 Aligned_cols=37 Identities=16% Similarity=0.047 Sum_probs=29.2
Q ss_pred eEEEEEeecCCCeEEeccCCCCHHHHHHHHHHHHHHhcC
Q 026103 77 KWVCELREPNKQTRIWLGTYPSPEMAARAHDVAALALRG 115 (243)
Q Consensus 77 kW~AeIr~~~~~kri~LGtf~t~EeAA~AyD~Aa~~~~G 115 (243)
.|+|.|.. ...-+-++...+++.|..|...|+.+|=+
T Consensus 79 ~wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 79 HYVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 59999986 55555577768899999999999987743
No 9
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=24.08 E-value=90 Score=23.34 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=28.0
Q ss_pred EEEEeecCCCeEEeccCCCCHHHHHHHHHHHHHH
Q 026103 79 VCELREPNKQTRIWLGTYPSPEMAARAHDVAALA 112 (243)
Q Consensus 79 ~AeIr~~~~~kri~LGtf~t~EeAA~AyD~Aa~~ 112 (243)
-+.|-+..+.-++|.|...+..|-++|-..|...
T Consensus 40 D~FILd~g~~iyvW~G~~ss~~Ek~~A~~~a~~i 73 (114)
T 1svq_A 40 DCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAI 73 (114)
T ss_dssp SEEEEEETTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred CeEEEecCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 4677776677899999999999999998887653
No 10
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=23.70 E-value=44 Score=22.92 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=17.1
Q ss_pred eEEeccCCCCHHHHHHHHHHH
Q 026103 89 TRIWLGTYPSPEMAARAHDVA 109 (243)
Q Consensus 89 kri~LGtf~t~EeAA~AyD~A 109 (243)
-|+++|.|.+.++|..+-+.-
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L 66 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARA 66 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHH
Confidence 478899999999998886543
No 11
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=23.08 E-value=37 Score=24.73 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=25.2
Q ss_pred CCceeEeEECCCCeEEEEEeecCCCeEEeccCCCCHHHHHH
Q 026103 64 HPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMAAR 104 (243)
Q Consensus 64 ~s~yrGVr~r~~GkW~AeIr~~~~~kri~LGtf~t~EeAA~ 104 (243)
--+||-|+.-+ |||+|.+.. ...-..--.|..+|.|-|
T Consensus 37 md~frdvw~lr-gkyvafvl~--ge~frrspafsvpesaqr 74 (87)
T 2bn8_A 37 MDSFRDVWMLR-GKYVAFVLM--GESFLRSPAFTVPESAQR 74 (87)
T ss_dssp TTTCTTEEEET-TEEEEBCCS--SSCCCBCCCBSSHHHHHH
T ss_pred cccchhheeec-cceEEEEEe--chhhccCCccCCcHHHHH
Confidence 34699997554 899998876 222222346778877765
No 12
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=21.70 E-value=79 Score=21.87 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=17.5
Q ss_pred CeEEeccCCCCHHHHHHHHHHH
Q 026103 88 QTRIWLGTYPSPEMAARAHDVA 109 (243)
Q Consensus 88 ~kri~LGtf~t~EeAA~AyD~A 109 (243)
--|+.+|-|.+.++|..+-+.-
T Consensus 45 ~yRV~vGpf~s~~~A~~~~~~L 66 (81)
T 1uta_A 45 WNRVVIGPVKGKENADSTLNRL 66 (81)
T ss_dssp SEEEEESSCBTTTHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHH
Confidence 4578899999999998876543
Done!