BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026104
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KJ6|A Chain A, Nmr Solution Structure Of A Tubulin Folding Cofactor B
Obtained From Arabidopsis Thaliana: Northeast
Structural Genomics Consortium Target Ar3436a
Length = 97
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 61/83 (73%), Positives = 74/83 (89%)
Query: 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTD 73
V L +TH+NLKSFSAD RF QMSVE+VK+KLW+KCGTSVNSM+LELYDD+ +KVA L+D
Sbjct: 15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSD 74
Query: 74 NSRPLGFYSPLQGYRLHVIDLDP 96
+SRPLGF+SP G+RLH+IDLDP
Sbjct: 75 DSRPLGFFSPFDGFRLHIIDLDP 97
>pdb|1TOV|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly
Domain Of F53f4.3
Length = 98
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 61/90 (67%), Gaps = 4/90 (4%)
Query: 148 SNNYMEDLCSNITVGDRCEVDPGA---KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNG 204
S+ E+ NI VG+RCEV GA +RG V YVG A G WVG++YDEP+GK++G
Sbjct: 4 SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVG-ATKFKEGVWVGVKYDEPVGKNDG 62
Query: 205 IVKGVRYFECPPLHGAMVRPDKVKVGDYPE 234
V GVRYF+C P +G VRP VKVGD+PE
Sbjct: 63 SVAGVRYFDCDPKYGGFVRPVDVKVGDFPE 92
>pdb|1LPL|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly
Domain Of F53f4.3
Length = 95
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 61/90 (67%), Gaps = 4/90 (4%)
Query: 148 SNNYMEDLCSNITVGDRCEVDPGA---KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNG 204
S+ E+ NI VG+RCEV GA +RG V YVG A G WVG++YDEP+GK++G
Sbjct: 1 SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVG-ATKFKEGVWVGVKYDEPVGKNDG 59
Query: 205 IVKGVRYFECPPLHGAMVRPDKVKVGDYPE 234
V GVRYF+C P +G VRP VKVGD+PE
Sbjct: 60 SVAGVRYFDCDPKYGGFVRPVDVKVGDFPE 89
>pdb|4B6M|A Chain A, Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gly
Domain
pdb|4B6M|B Chain B, Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gly
Domain
Length = 84
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 57/76 (75%)
Query: 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 217
I VGDRC PG + G V++VG+ S+ PG+WVG+++DEP+GK +G VKG R F+C P
Sbjct: 5 TIHVGDRCLCRPGDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQPN 64
Query: 218 HGAMVRPDKVKVGDYP 233
+G +RPD+V+VGD+P
Sbjct: 65 YGGFLRPDQVEVGDFP 80
>pdb|1WHG|A Chain A, Solution Structure Of The Cap-Gly Domain In Mouse Tubulin
Specific Chaperone B
Length = 113
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 6/102 (5%)
Query: 133 EKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEV---DPGAKRGVVKYVGQAESIAPGF 189
E++ +Q + +LS + S I+VG RCEV D +RG V YVG + PG+
Sbjct: 9 EELRAQQEAEAAQRLSEEKAQ--ASAISVGSRCEVRAPDHSLRRGTVMYVGLTD-FKPGY 65
Query: 190 WVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGD 231
WVG++YDEPLGK++G V G RYFEC +GA V+P V VGD
Sbjct: 66 WVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGD 107
>pdb|2CP2|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 115CYLN2
Length = 95
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 153 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYF 212
+D + VG+R V+ G K GVV+Y+G+ + APG W G+ D+P+GK++G V GVRYF
Sbjct: 13 DDFLGDFVVGERVWVN-GVKPGVVQYLGETQ-FAPGQWAGVVLDDPVGKNDGAVGGVRYF 70
Query: 213 ECPPLHGAMVRPDKV 227
ECP L G RP K+
Sbjct: 71 ECPALQGIFTRPSKL 85
>pdb|2CP5|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 141
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 148 SNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVK 207
S+ E+ + VG+R V+ G K G ++++G+ + APG W GI DEP+GK++G V
Sbjct: 54 SSETQEEFVDDFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVA 111
Query: 208 GVRYFECPPLHGAMVRPDKV 227
GVRYF+C PL G RP K+
Sbjct: 112 GVRYFQCEPLKGIFTRPSKL 131
>pdb|2QK0|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
Length = 74
Score = 71.2 bits (173), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 157 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 216
S+ VG+R V+ G K G ++++G+ + APG W GI DEP+GK++G V GVRYF+C P
Sbjct: 2 SDFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEP 59
Query: 217 LHGAMVRPDK 226
L G RP K
Sbjct: 60 LKGIFTRPSK 69
>pdb|3RDV|A Chain A, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|B Chain B, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|C Chain C, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|D Chain D, Structure Of The Slain2c-Clipcg1 Complex
Length = 72
Score = 70.1 bits (170), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 161 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGA 220
VG+R V+ G K G ++++G+ + APG W GI DEP+GK++G V GVRYF+C PL G
Sbjct: 5 VGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGI 62
Query: 221 MVRPDKV 227
RP K+
Sbjct: 63 FTRPSKL 69
>pdb|2CP7|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse
Clip- 170RESTIN
Length = 84
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 157 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 216
S VG+R V+ G K G ++++G+ + APG W GI DEP+GK++G V GVRYF+C P
Sbjct: 6 SGFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEP 63
Query: 217 LHGAMVRPDKV 227
L G RP K+
Sbjct: 64 LKGIFTRPSKL 74
>pdb|2E3I|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 1
Length = 86
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 217
+ VG+R V+ G K G ++++G+ + APG W GI DEP+GK++G V GVRYF+C PL
Sbjct: 2 DFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59
Query: 218 HGAMVRPDKV 227
G RP K+
Sbjct: 60 KGIFTRPSKL 69
>pdb|1T0Y|A Chain A, Solution Structure Of A Ubiquitin-Like Domain From
Tubulin- Binding Cofactor B
Length = 122
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 7/120 (5%)
Query: 16 LRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNS 75
L +T +N F + ++P MS+ +K KL GT+V+SM ++L+D + LTD +
Sbjct: 9 LEIT-TNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGA 67
Query: 76 RPLGFYSPLQGYRLHVIDLDPSSVTSGGW-LEDTSLVEKYTISEEEYSKRDGTFRKFKEK 134
+ L GYR+H +D VT G +D S+VEKY +S++ Y KR + R +K+K
Sbjct: 68 KSLKDLGVRDGYRIHAVD-----VTGGNEDFKDESMVEKYEMSDDTYGKRTDSVRAWKKK 122
>pdb|2CP3|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 115CYLN2
Length = 84
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 157 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 216
S + +GDR V G K GVV+YVG+ + A G W G++ DEPLGK++G V G RYF+CPP
Sbjct: 6 SGLRLGDRVLVG-GTKTGVVRYVGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCPP 63
Query: 217 LHGAMVRPDKV-KVGDYP 233
G KV ++G P
Sbjct: 64 KFGLFAPIHKVIRIGSGP 81
>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 172
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
+ +GDR V G K GVV+++G+ + A G W G++ DEPLGK++G V G RYF+C P +
Sbjct: 39 LKIGDRVLVG-GTKAGVVRFLGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKY 96
Query: 219 GAMVRPDKVKVGDYPERDP 237
G KV +P P
Sbjct: 97 GLFAPVHKVTKIGFPSTTP 115
>pdb|1WHH|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Mouse
Clip170-Related 59kda Protein Clipr-59
Length = 102
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 161 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGA 220
VGD+ V G K+G+V++ G+ + APG+W GI+ D+P GKH+G V GVRYF C P HG
Sbjct: 28 VGDQVLV-AGQKQGIVRFYGKTD-FAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGV 85
Query: 221 MVRPDKV-KVGDYP 233
++ ++G P
Sbjct: 86 FAPASRIQRIGSGP 99
>pdb|2E3H|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 2
Length = 90
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
+ +GDR V G K GVV+++G+ + A G W G++ DEPLGK++G V G RYF+C P +
Sbjct: 2 LKIGDRVLVG-GTKAGVVRFLGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKY 59
Query: 219 GAMVRPDKVKVGDYPERDP 237
G KV +P P
Sbjct: 60 GLFAPVHKVTKIGFPSTTP 78
>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex With
Tubulin Tail
Length = 98
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
+ +GDR V G K GVV+++G+ + A G W G++ DEPLGK++G V G RYF+C P +
Sbjct: 10 LKIGDRVLVG-GTKAGVVRFLGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKY 67
Query: 219 GAMVRPDKVKVGDYPERDP 237
G KV +P P
Sbjct: 68 GLFAPVHKVTKIGFPSTTP 86
>pdb|2COY|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Dynactin
1
Length = 112
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 132 KEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWV 191
K V S+ PS S E + VG R EV RG V YVG A A G WV
Sbjct: 12 KRHVYSRTPSG-----SRMSAEASARPLRVGSRVEVIGKGHRGTVAYVG-ATLFATGKWV 65
Query: 192 GIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKV 229
G+ DE GK++G V+G +YF C HG VR +++V
Sbjct: 66 GVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQV 103
>pdb|2CP0|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 170-Related Protein Clipr59
Length = 95
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 217
+ +GDR +D G K G +++ G E A G WVG++ DEP GK++G V GVRYF CPP
Sbjct: 16 GLRLGDRVLLD-GQKTGTLRFCGTTE-FASGQWVGVELDEPEGKNDGSVGGVRYFICPPK 73
Query: 218 HGAMVRPDKV 227
G K+
Sbjct: 74 QGLFASVSKI 83
>pdb|1TXQ|A Chain A, Crystal Structure Of The Eb1 C-Terminal Domain Complexed
With The Cap-Gly Domain Of P150glued
pdb|2HQH|A Chain A, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|B Chain B, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|C Chain C, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|D Chain D, Crystal Structure Of P150glued And Clip-170
Length = 93
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
+ VG R EV RG V YVG A A G WVG+ DE GK++G V+G +YF C H
Sbjct: 13 LRVGSRVEVIGKGHRGTVAYVG-ATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 71
Query: 219 GAMVRPDKVKV 229
G VR +++V
Sbjct: 72 GIFVRQSQIQV 82
>pdb|2HKN|A Chain A, Crystal Structure Of The Cap-Gly Domain Of Human
Dynactin-1 (P150- Glued)
pdb|2HKN|B Chain B, Crystal Structure Of The Cap-Gly Domain Of Human
Dynactin-1 (P150- Glued)
pdb|2HKQ|B Chain B, Crystal Structure Of The C-Terminal Domain Of Human Eb1 In
Complex With The Cap-Gly Domain Of Human Dynactin-1
(P150-Glued)
pdb|3E2U|A Chain A, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|B Chain B, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|C Chain C, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|D Chain D, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
Length = 97
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
+ VG R EV RG V YVG A A G WVG+ DE GK++G V+G +YF C H
Sbjct: 13 LRVGSRVEVIGKGHRGTVAYVG-ATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 71
Query: 219 GAMVRPDKVKV 229
G VR +++V
Sbjct: 72 GIFVRQSQIQV 82
>pdb|3TQ7|P Chain P, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of
P150glued
pdb|3TQ7|Q Chain Q, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of
P150glued
Length = 71
Score = 60.1 bits (144), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
+ VG R EV RG V YVG A G WVG+ DE GK++G V+G +YF C H
Sbjct: 1 LRVGSRVEVIGKGHRGTVAYVGMT-LFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 59
Query: 219 GAMVRPDKVKV 229
G VR +++V
Sbjct: 60 GIFVRQSQIQV 70
>pdb|2HL3|A Chain A, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of
Human Dynactin-1 (P150-Glued) In Complex With Human Eb1
C- Terminal Hexapeptide
pdb|2HL3|B Chain B, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of
Human Dynactin-1 (P150-Glued) In Complex With Human Eb1
C- Terminal Hexapeptide
pdb|2HL5|C Chain C, Crystal Structure Of The C-Terminal Domain Of Human Eb1 In
Complex With The A49m Mutant Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|2HL5|D Chain D, Crystal Structure Of The C-Terminal Domain Of Human Eb1 In
Complex With The A49m Mutant Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
Length = 97
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
+ VG R EV RG V YVG A G WVG+ DE GK++G V+G +YF C H
Sbjct: 13 LRVGSRVEVIGKGHRGTVAYVGMT-LFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 71
Query: 219 GAMVRPDKVKV 229
G VR +++V
Sbjct: 72 GIFVRQSQIQV 82
>pdb|2COW|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Kinesin-
Like Protein Kif13b
Length = 100
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 172 KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK 228
K GVV+YVG A+ G WVG++ D P GK++G + G +YF C P +G +VRP +V+
Sbjct: 36 KTGVVRYVGPAD-FQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVR 91
>pdb|2COZ|A Chain A, Solution Structure Of The Cap-Gly Domain In Human
Centrosome-Associated Protein Cap350
Length = 122
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 133 EKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVG 192
E+ ++++PS L++ D + +GDR + + G++++ G+ S A GFW G
Sbjct: 11 EQQVTESPS-----LASVPTADELFDFHIGDRVLIG-NVQPGILRFKGET-SFAKGFWAG 63
Query: 193 IQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKV 227
++ D+P G +NG G+ YFEC HG P K+
Sbjct: 64 VELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKI 98
>pdb|2Z0W|A Chain A, Crystal Structure Of The 2nd Cap-Gly Domain In Human
Restin- Like Protein 2 Reveals A Swapped-Dimer
Length = 96
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
+ +G+R V G + G +++ G + APG+W GI+ ++P GK++G V GV+YF C P +
Sbjct: 11 LRLGERVLVV-GQRLGTIRFFGTT-NFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRY 68
Query: 219 GAMVRPDKVK 228
G P +V+
Sbjct: 69 GIFAPPSRVQ 78
>pdb|1WHJ|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse
1700024k14rik Hypothetical Protein
Length = 102
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 217
+ +GDR V G K G +++ G E A G W GI+ DEP GK+NG V V+YF+C P
Sbjct: 24 GLKLGDRV-VIAGQKVGTLRFCGTTE-FASGQWAGIELDEPEGKNNGSVGRVQYFKCAPK 81
Query: 218 HGAMVRPDKV 227
+G K+
Sbjct: 82 YGIFAPLSKI 91
>pdb|1WHK|A Chain A, Solution Structure Of The 3rd Cap-Gly Domain In Mouse
1700024k14rik Hypothetical Protein
Length = 91
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 175 VVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKV 227
V+YVG + A G W+G++ GK++G V RYF C P +G +VRP +V
Sbjct: 29 TVRYVGPTD-FASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRV 80
>pdb|4B6W|A Chain A, Architecture Of Trypanosoma Brucei Tubulin-Binding
Cofactor B
Length = 86
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTD 73
V + +THS + + R+ L ++ES+K+ ++ T L+L DD +
Sbjct: 3 VKVSLTHSASRXRVPEKRYGLAQTIESIKENVFTHFATPPEYXQLQLIDDRGITIEKNXA 62
Query: 74 NSRPLGFYSPLQGYRLHVIDLDPS 97
N + LG+Y + +HV+DL PS
Sbjct: 63 NDKQLGYYQCRDEFVIHVVDLQPS 86
>pdb|1V6E|A Chain A, Solution Structure Of A N-Terminal Ubiquitin-Like Domain
In Mouse Tubulin-Specific Chaperone B
Length = 95
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA 69
G V++ ++ S+L SF ++ R+ +++ K KL G+ + M LELY + +
Sbjct: 4 GSSGVMVFIS-SSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYS 62
Query: 70 ALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSG 102
L LG Y G R+HVID S +SG
Sbjct: 63 KLDQEDALLGSYPVDDGCRIHVIDHSGSGPSSG 95
>pdb|2KJR|A Chain A, Solution Nmr Structure Of The N-Terminal Ubiquitin-Like
Domain From Tubulin-Binding Cofactor B, Cg11242, From
Drosophila Melanogaster. Northeast Structural Genomics
Consortium Target Fr629a (Residues 8-92)
Length = 95
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 16 LRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNS 75
+ V++S+ + + +V+ ++V +K KL G +M ++++ +T V+ + +N
Sbjct: 18 VNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKG-DTCVSTMDNND 76
Query: 76 RPLGFYSPLQGYRLHVID 93
LG+Y+ G RLHV+D
Sbjct: 77 AQLGYYANSDGLRLHVVD 94
>pdb|3TK1|A Chain A, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
pdb|3TK1|B Chain B, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
Length = 330
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 78 LGFYSPLQGYRLHVIDLDPSSVTSGG-WLEDTSLVEKYTISEEEYSK 123
LG + QG+R+ V+ +DPSSV SGG L D + + + + + Y +
Sbjct: 76 LGMHLIEQGHRVAVLAVDPSSVRSGGSILGDKTRMARLAVHPDAYVR 122
>pdb|3O0G|D Chain D, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
pdb|3O0G|E Chain E, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
Length = 149
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 12 ESVLLRVTHSNLKSFSADVRFPLQ-MSVESVKDKLWRKCGTSVNSMS 57
++VLL + + ++ +PL+ VES K+ W +C + +N MS
Sbjct: 79 QAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSVINLMS 125
>pdb|1H4L|D Chain D, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
pdb|1H4L|E Chain E, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
Length = 147
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 12 ESVLLRVTHSNLKSFSADVRFPLQ-MSVESVKDKLWRKCGTSVNSMS 57
++VLL + + ++ +PL+ VES K+ W +C + +N MS
Sbjct: 77 QAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSVINLMS 123
>pdb|1UNG|D Chain D, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNG|E Chain E, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|D Chain D, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|E Chain E, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNL|D Chain D, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|1UNL|E Chain E, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin
Length = 208
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 12 ESVLLRVTHSNLKSFSADVRFPLQ-MSVESVKDKLWRKCGTSVNSMS 57
++VLL + + ++ +PL+ VES K+ W +C + +N MS
Sbjct: 124 QAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSVINLMS 170
>pdb|2WWW|A Chain A, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|B Chain B, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|C Chain C, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|D Chain D, Crystal Structure Of Methylmalonic Acidemia Type A Protein
Length = 349
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 85 QGYRLHVIDLDPSSVTSGGWL 105
+G++L V+ +DPSS TSGG L
Sbjct: 101 RGHKLSVLAVDPSSCTSGGSL 121
>pdb|3TW5|A Chain A, Crystal Structure Of The Gp42 Transglutaminase From
Phytophthora Sojae
pdb|3TW5|B Chain B, Crystal Structure Of The Gp42 Transglutaminase From
Phytophthora Sojae
Length = 367
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 117 SEEEYSKRDGT-FRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRG- 174
+ E+Y+K G + F + V +N ++ +D CS +T G C + G G
Sbjct: 60 AAEKYAKAFGKDVKTFMDAVSKKNGIDSQSGRKKCSSDDDCSTLTDGSSCSIRTGKTSGY 119
Query: 175 -VVKYVGQAESIAPGFWVGIQYDEPLGKHNGIV 206
+ + G + + +P + + P+ KHNG+
Sbjct: 120 CIPTWFGISHAWSPAAILETEPKCPV-KHNGVT 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,614,467
Number of Sequences: 62578
Number of extensions: 317561
Number of successful extensions: 478
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 38
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)