BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026104
(243 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q20728|TBCB_CAEEL Tubulin-specific chaperone B OS=Caenorhabditis elegans GN=F53F4.3
PE=1 SV=1
Length = 229
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 14/225 (6%)
Query: 16 LRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNS 75
L +T +N F + ++P MS+ +K KL GT+V+SM ++L+D + LTD +
Sbjct: 7 LEIT-TNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGA 65
Query: 76 RPLGFYSPLQGYRLHVIDLDPSSVTSGGW-LEDTSLVEKYTISEEEYSKRDGTFRKFKEK 134
+ L GYR+H +D VT G +D S+VEKY +S++ Y KR + R +K+K
Sbjct: 66 KSLKDLGVRDGYRIHAVD-----VTGGNEDFKDESMVEKYEMSDDTYGKRTDSVRAWKKK 120
Query: 135 VLSQNPSA--VENKLSNNYMEDLCSNITVGDRCEVDPGA---KRGVVKYVGQAESIAPGF 189
+ + SA +EN+ S+ E+ NI VG+RCEV GA +RG V YVG A G
Sbjct: 121 MQEEQGSAAPMENE-SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVG-ATKFKEGV 178
Query: 190 WVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPE 234
WVG++YDEP+GK++G V GVRYF+C P +G VRP VKVGD+PE
Sbjct: 179 WVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPVDVKVGDFPE 223
>sp|Q9D1E6|TBCB_MOUSE Tubulin-folding cofactor B OS=Mus musculus GN=Tbcb PE=1 SV=2
Length = 244
Score = 147 bits (371), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 121/228 (53%), Gaps = 18/228 (7%)
Query: 21 SNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGF 80
S+L SF ++ R+ +++ K KL G+ + M LELY + + L LG
Sbjct: 17 SSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGS 76
Query: 81 YSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF--------- 131
Y G R+HVID S G ED S VEKY IS E Y +R T R F
Sbjct: 77 YPVDDGCRIHVID---HSGVRLGEYEDVSKVEKYEISPEAYERRQNTVRSFMKRSKLGPY 133
Query: 132 KEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEV---DPGAKRGVVKYVGQAESIAPG 188
E++ +Q + +LS + S I+VG RCEV D +RG V YVG + PG
Sbjct: 134 NEELRAQQEAEAAQRLSEEKAQ--ASAISVGSRCEVRAPDHSLRRGTVMYVGLTD-FKPG 190
Query: 189 FWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERD 236
+WVG++YDEPLGK++G V G RYFEC +GA V+P V VGD+PE D
Sbjct: 191 YWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGDFPEED 238
>sp|Q5E951|TBCB_BOVIN Tubulin-folding cofactor B OS=Bos taurus GN=TBCB PE=2 SV=1
Length = 244
Score = 140 bits (354), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 120/226 (53%), Gaps = 14/226 (6%)
Query: 21 SNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGF 80
S+L SF + R+ ++V K KL G+ + M LELY + L + LG
Sbjct: 17 SSLNSFRSQKRYSRSLTVAEFKCKLQLVVGSPASCMELELYGPDDKFCCKLDQDDALLGS 76
Query: 81 YSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF--KEKVLSQ 138
Y G R+HVID + + G ED S VEKY IS+E Y +R + R F + K+
Sbjct: 77 YPVDDGCRIHVIDHSGARL---GEYEDISKVEKYEISQEAYEQRQDSIRSFLKRNKLGRF 133
Query: 139 NPSAVENKLSNNYM-----EDLCSNITVGDRCEV-DPGA--KRGVVKYVGQAESIAPGFW 190
N + + N E S I VG RCEV PG +RG V YVG + PG+W
Sbjct: 134 NEEERAQQEAENSQRLIEEEAQASTIPVGSRCEVRTPGQPPRRGTVMYVGLTD-FKPGYW 192
Query: 191 VGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERD 236
+GI+YDEPLGK++G V G RYFEC +GA V+P V VGD+PE D
Sbjct: 193 IGIRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSVVTVGDFPEED 238
>sp|Q99426|TBCB_HUMAN Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2
Length = 244
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 123/233 (52%), Gaps = 15/233 (6%)
Query: 21 SNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGF 80
S+L +F ++ R+ +++ K KL G+ + M LELY + + L LG
Sbjct: 17 SSLNTFRSEKRYSRSLTIAEFKCKLELLVGSPASCMELELYGVDDKFYSKLDQEDALLGS 76
Query: 81 YSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF-KEKVLSQN 139
Y G R+HVID + + G ED S VEKYTIS+E Y +R T R F K L +
Sbjct: 77 YPVDDGCRIHVIDHSGARL---GEYEDVSRVEKYTISQEAYDQRQDTVRSFLKRSKLGRY 133
Query: 140 PSAVENKLSNNYMEDLC------SNITVGDRCEVDPGA---KRGVVKYVGQAESIAPGFW 190
+ + L S+I VG RCEV +RG V YVG + PG+W
Sbjct: 134 NEEERAQQEAEAAQRLAEEKAQASSIPVGSRCEVRAAGQSPRRGTVMYVGLTD-FKPGYW 192
Query: 191 VGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI 243
+G++YDEPLGK++G V G RYFEC +GA V+P V VGD+PE D + DEI
Sbjct: 193 IGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPAVVTVGDFPEED-YGLDEI 244
>sp|Q54Z01|TBCB_DICDI Tubulin-specific chaperone B OS=Dictyostelium discoideum GN=tbcb
PE=3 SV=1
Length = 270
Score = 130 bits (328), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 127/242 (52%), Gaps = 21/242 (8%)
Query: 13 SVLLRVTHSNLKSFSADVR----FPLQMSVESVKDKLWRKCGTSVNSMSLELYDDT--NT 66
+V L +THS L S F L + ++ K+KL+R GT M L L D+ N
Sbjct: 31 NVRLEITHSVLTGESLGTNNFKNFSLDLKIKDFKEKLYRFVGTEPKYMELILRDENKVND 90
Query: 67 KVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDG 126
D+ + LG Y P G +H+ID DP++ S L+D S K ISEE+Y+KR+G
Sbjct: 91 ICKIDDDDDKTLGSYEPKDGMNVHIIDKDPNNFVS--ELQDISKAPKPVISEEDYNKREG 148
Query: 127 TFRKFKEKVLSQNPSAVENKLSNNYMEDLCS------NITVGDRCEV---DP---GAKRG 174
T++K+KE+ + + + I VGDRC+V DP + G
Sbjct: 149 TYKKWKEENQLKKENDTTATTVTATTTTTNNATDTEIEIKVGDRCKVISDDPTNYDERLG 208
Query: 175 VVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPE 234
V+YVG E + G W+G++ D PLGK++G VKG +YF+C P +G +P V VGDYPE
Sbjct: 209 KVQYVGTVE-FSSGVWIGVELDLPLGKNDGSVKGKQYFQCSPKYGCFAKPKNVLVGDYPE 267
Query: 235 RD 236
+
Sbjct: 268 EE 269
>sp|Q9UDT6|CLIP2_HUMAN CAP-Gly domain-containing linker protein 2 OS=Homo sapiens GN=CLIP2
PE=1 SV=1
Length = 1046
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 153 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYF 212
+D + VG+R V+ G K GVV+Y+G+ + APG W G+ D+P+GK++G V GVRYF
Sbjct: 73 DDFLGDFVVGERVWVN-GVKPGVVQYLGETQ-FAPGQWAGVVLDDPVGKNDGAVGGVRYF 130
Query: 213 ECPPLHGAMVRPDKV 227
ECP L G RP K+
Sbjct: 131 ECPALQGIFTRPSKL 145
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 217
++ +GDR V G K GVV+YVG+ + A G W G++ DEPLGK++G V G RYF+CPP
Sbjct: 218 DLRLGDRVLVG-GTKTGVVRYVGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPK 275
Query: 218 HGAMVRPDKVKVGDYPERDP 237
G KV +P P
Sbjct: 276 FGLFAPIHKVIRIGFPSTSP 295
>sp|Q9Z0H8|CLIP2_MOUSE CAP-Gly domain-containing linker protein 2 OS=Mus musculus GN=Clip2
PE=1 SV=2
Length = 1047
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 153 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYF 212
+D + VG+R V+ G K GVV+Y+G+ + APG W G+ D+P+GK++G V GVRYF
Sbjct: 74 DDFLGDFVVGERVWVN-GVKPGVVQYLGETQ-FAPGQWAGVVLDDPVGKNDGAVGGVRYF 131
Query: 213 ECPPLHGAMVRPDKV 227
ECP L G RP K+
Sbjct: 132 ECPALQGIFTRPSKL 146
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 217
++ +GDR V G K GVV+YVG+ + A G W G++ DEPLGK++G V G RYF+CPP
Sbjct: 219 DLHLGDRVLVG-GTKTGVVRYVGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPK 276
Query: 218 HGAMVRPDKVKVGDYPERDP 237
G KV +P P
Sbjct: 277 FGLFAPIHKVIRIGFPSTSP 296
>sp|O55156|CLIP2_RAT CAP-Gly domain-containing linker protein 2 OS=Rattus norvegicus
GN=Clip2 PE=1 SV=1
Length = 1046
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 153 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYF 212
+D + VG+R V+ G K GVV+Y+G+ + APG W G+ D+P+GK++G V G+RYF
Sbjct: 74 DDFLGDFVVGERVWVN-GVKPGVVQYLGETQ-FAPGQWAGVVLDDPVGKNDGAVGGLRYF 131
Query: 213 ECPPLHGAMVRPDKV 227
ECP L G RP K+
Sbjct: 132 ECPALQGIFTRPSKL 146
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 217
++ +GDR V G K GVV+YVG+ + A G W G++ DEPLGK++G V G RYF+CPP
Sbjct: 219 DLHLGDRVLVG-GTKTGVVRYVGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPK 276
Query: 218 HGAMVRPDKVKVGDYPERDP 237
G KV +P P
Sbjct: 277 FGLFAPIHKVIRIGFPSTSP 296
>sp|Q10235|ALP11_SCHPO Cell polarity protein alp11 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=alp11 PE=1 SV=1
Length = 234
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 11/143 (7%)
Query: 105 LEDTSLVEKYTISEEEYSKRDGTFRKFKEK--VLSQNPSAVENKLSNNY-----MEDLCS 157
+D S V+KY + E+Y R + +K++ + NP +K S + DL
Sbjct: 93 FDDLSQVDKYVMPREQYENRTDSVYAWKKRNQLGRFNPDFEASKASRQESLKRELVDLQK 152
Query: 158 NITVGDRCEVDPGAKRGVVKYVGQAESIA-PGFWVGIQYDEPLGKHNGIVKGVRYFECPP 216
N+ RC G + G ++Y+G I WVG+++DEP+GK++G V G RYF
Sbjct: 153 NLN--SRC-CAAGERYGTIRYIGLVPEINNDNLWVGVEFDEPVGKNDGTVSGKRYFNAKN 209
Query: 217 LHGAMVRPDKVKVGDYPERDPFE 239
HG+ +R +V+VGD+P D E
Sbjct: 210 KHGSFLRSSEVEVGDFPPEDILE 232
>sp|Q96DZ5|CLIP3_HUMAN CAP-Gly domain-containing linker protein 3 OS=Homo sapiens GN=CLIP3
PE=1 SV=3
Length = 547
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 161 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGA 220
VGD+ V G K+G+V++ G+ + APG+W GI+ D+P GKH+G V GVRYF CPP HG
Sbjct: 418 VGDQVLVA-GQKQGIVRFYGKTD-FAPGYWYGIELDQPTGKHDGSVFGVRYFTCPPRHGV 475
Query: 221 MVRPDKVK 228
+++
Sbjct: 476 FAPASRIQ 483
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 217
+ +GDR +D G K G +++ G E A G WVG++ DEP GK++G V GVRYF CPP
Sbjct: 293 GLRLGDRVLLD-GQKTGTLRFCGTTE-FASGQWVGVELDEPEGKNDGSVGGVRYFICPPK 350
Query: 218 HGAMVRPDKV-KVGDYP 233
G K+ K D P
Sbjct: 351 QGLFASVSKISKAVDAP 367
>sp|Q5R686|CLIP3_PONAB CAP-Gly domain-containing linker protein 3 OS=Pongo abelii GN=CLIP3
PE=2 SV=1
Length = 547
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 161 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGA 220
VGD+ V G K+G+V++ G+ + APG+W GI+ D+P GKH+G V GVRYF CPP HG
Sbjct: 418 VGDQVLVA-GQKQGIVRFYGKTD-FAPGYWYGIELDQPTGKHDGSVFGVRYFTCPPRHGV 475
Query: 221 MVRPDKVK 228
+++
Sbjct: 476 FAPASRIQ 483
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 217
+ +GDR +D G K G +++ G E A G WVG++ DEP GK++G V GVRYF CPP
Sbjct: 293 GLRLGDRVLLD-GQKTGTLRFCGTTE-FASGQWVGVELDEPEGKNDGSVGGVRYFICPPK 350
Query: 218 HGAMVRPDKV-KVGDYP 233
G K+ K D P
Sbjct: 351 QGLFASVSKISKAVDAP 367
>sp|O42184|CLIP1_CHICK CAP-Gly domain-containing linker protein 1 OS=Gallus gallus
GN=CLIP1 PE=2 SV=1
Length = 1433
Score = 70.1 bits (170), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 8/90 (8%)
Query: 153 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYF 212
+D + VG+R V+ G K G ++++G+ + APG W GI DEP+GK++G V GVRYF
Sbjct: 53 DDFVDDFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVAGVRYF 110
Query: 213 ECPPLHGAMVRPDKVKVGDYPERDPFEEDE 242
+C PL G RP K+ R EDE
Sbjct: 111 QCEPLRGIFTRPSKL------SRKVLTEDE 134
Score = 63.5 bits (153), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
+ +GDR V G K GVV+++G+ + A G W G++ DEPLGK++G V G RYF+C P +
Sbjct: 215 LKIGDRVLVG-GTKAGVVRFLGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPRY 272
Query: 219 GAMVRPDKVKVGDYPERDP 237
G KV +P P
Sbjct: 273 GLFAPVHKVTKIGFPSTTP 291
>sp|Q922J3|CLIP1_MOUSE CAP-Gly domain-containing linker protein 1 OS=Mus musculus GN=Clip1
PE=1 SV=1
Length = 1391
Score = 70.1 bits (170), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 148 SNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVK 207
S+ E+ + VG+R V+ G K G ++++G+ + APG W GI DEP+GK++G V
Sbjct: 47 SSETQEEFVDDFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVA 104
Query: 208 GVRYFECPPLHGAMVRPDKV 227
GVRYF+C PL G RP K+
Sbjct: 105 GVRYFQCEPLKGIFTRPSKL 124
Score = 63.5 bits (153), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
+ VGDR V G K GVV+++G+ + A G W G++ DEPLGK++G V G RYF+C P +
Sbjct: 211 LKVGDRVLVG-GTKAGVVRFLGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKY 268
Query: 219 GAMVRPDKVKVGDYPERDP 237
G KV +P P
Sbjct: 269 GLFAPVHKVTKIGFPSTTP 287
>sp|P30622|CLIP1_HUMAN CAP-Gly domain-containing linker protein 1 OS=Homo sapiens GN=CLIP1
PE=1 SV=2
Length = 1438
Score = 70.1 bits (170), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 148 SNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVK 207
S+ E+ + VG+R V+ G K G ++++G+ + APG W GI DEP+GK++G V
Sbjct: 47 SSETQEEFVDDFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVA 104
Query: 208 GVRYFECPPLHGAMVRPDKV 227
GVRYF+C PL G RP K+
Sbjct: 105 GVRYFQCEPLKGIFTRPSKL 124
Score = 63.2 bits (152), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
+ +GDR V G K GVV+++G+ + A G W G++ DEPLGK++G V G RYF+C P +
Sbjct: 212 LKIGDRVLVG-GTKAGVVRFLGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKY 269
Query: 219 GAMVRPDKVKVGDYPERDP 237
G KV +P P
Sbjct: 270 GLFAPVHKVTKIGFPSTTP 288
>sp|Q01397|DYNA_NEUCR Dynactin, 150 kDa isoform OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ro-3
PE=3 SV=3
Length = 1367
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 159 ITVGDRCEVDPGAKR-GVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 217
+ VG + E+ G+ R V+YVG+ + APG WVGI+ DEP GK++G V+G RYF C
Sbjct: 6 VAVGQKIELADGSGRTAFVRYVGET-AFAPGTWVGIELDEPSGKNDGSVQGERYFNCEMG 64
Query: 218 HGAMVRPDKVKV 229
+G VRP V
Sbjct: 65 YGMFVRPTTFNV 76
>sp|B9EHT4|CLIP3_MOUSE CAP-Gly domain-containing linker protein 3 OS=Mus musculus GN=Clip3
PE=1 SV=1
Length = 547
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 161 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGA 220
VGD+ V G K+G+V++ G+ + APG+W GI+ D+P GKH+G V GVRYF C P HG
Sbjct: 418 VGDQVLVA-GQKQGIVRFYGKTD-FAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGV 475
Query: 221 MVRPDKVK 228
+++
Sbjct: 476 FAPASRIQ 483
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 217
+ +GDR +D G K G +++ G E A G WVG++ DEP GK++G V GVRYF CPP
Sbjct: 293 GLRLGDRVLLD-GQKTGTLRFCGTTE-FASGQWVGVELDEPEGKNDGSVGGVRYFICPPK 350
Query: 218 HGAMVRPDKV-KVGDYP 233
G KV K D P
Sbjct: 351 QGLFASVSKVSKAVDAP 367
>sp|Q5U243|CLIP3_XENLA CAP-Gly domain-containing linker protein 3 OS=Xenopus laevis
GN=clip3 PE=2 SV=1
Length = 534
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
I +GD+ V G K+G+V++ G+ + APG+W GI+ ++P GKH+G V GVRYF C +
Sbjct: 403 IEIGDQVLVA-GQKQGIVRFYGKTD-FAPGYWFGIELEKPTGKHDGSVFGVRYFTCSAKN 460
Query: 219 GAMVRPDKVKVGDYPERDP 237
G P +V+ P +DP
Sbjct: 461 GVFAPPSRVQRMGGP-KDP 478
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
+ +GDR +D K G +++ G E A G WVG++ DEP GK++G V G+RYF CPP
Sbjct: 284 LKLGDRILLD-AEKAGTLRFCGTTE-FASGQWVGVELDEPDGKNDGSVGGIRYFICPPKQ 341
Query: 219 GAMVRPDKV-KVGDYP 233
G K+ K D P
Sbjct: 342 GIFAPVSKISKAPDQP 357
>sp|Q9VJE5|CL190_DROME Restin homolog OS=Drosophila melanogaster GN=CLIP-190 PE=1 SV=1
Length = 1690
Score = 62.0 bits (149), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 157 SNITVGDRCEVDPG--AKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFEC 214
+ + VGDR V G ++ G+++Y+G+ + APG W G++ DEP GK++G V +RYFEC
Sbjct: 235 NGMAVGDRVIVSSGFGSRPGILRYLGETQ-FAPGNWCGVELDEPSGKNDGTVDDIRYFEC 293
Query: 215 PPLHGAMVRPDKVKV 229
P +G V KV +
Sbjct: 294 KPKYGVFVPIAKVSL 308
Score = 47.4 bits (111), Expect = 9e-05, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 139 NPSAVENKLSNNYMEDLCSN---ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQY 195
N S++ + ++N L +N +G R + G + G + ++G A G W G+
Sbjct: 100 NLSSINSAYTDNSSAVLTANTEQFIIGQRVWLG-GTRPGQIAFIGDTH-FAAGEWAGVVL 157
Query: 196 DEPLGKHNGIVKGVRYFECPPLHGAMVR 223
DEP GK++G V G RYF+C P G R
Sbjct: 158 DEPNGKNDGCVSGKRYFQCEPKRGIFSR 185
>sp|Q9NQT8|KI13B_HUMAN Kinesin-like protein KIF13B OS=Homo sapiens GN=KIF13B PE=1 SV=1
Length = 1826
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 172 KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGD 231
K GVV+YVG A+ G WVG++ D P GK++G + G +YF C P +G +VRP +V+
Sbjct: 1713 KTGVVRYVGPAD-FQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRAT 1771
Query: 232 YPER 235
P R
Sbjct: 1772 GPVR 1775
>sp|Q5VT06|CE350_HUMAN Centrosome-associated protein 350 OS=Homo sapiens GN=CEP350 PE=1 SV=1
Length = 3117
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 161 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGA 220
+GDR + + G++++ G+ S A GFW G++ D+P G +NG G+ YFEC HG
Sbjct: 2499 IGDRVLIG-NVQPGILRFKGET-SFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGI 2556
Query: 221 MVRPDKV 227
P K+
Sbjct: 2557 FAPPQKI 2563
>sp|P53904|TBCB_YEAST Tubulin-specific chaperone B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ALF1 PE=1 SV=1
Length = 254
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 17/215 (7%)
Query: 32 FPLQMSVESVKDKLWRKCGTSVNSMSLEL---YDD----TNTKVAALTDNSRPLGFYSPL 84
P + + KD+L+ G M + + YD+ + K A ++ F
Sbjct: 17 LPNSLKLRQFKDRLYHVTGVEPEDMEIVVKRQYDNKEIYSTKKGGAYSNEDEDANFLKGE 76
Query: 85 QGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKE-------KVLS 137
+ + V D + S+++ + + ISEE+Y +RD + ++K
Sbjct: 77 EELIVVVTDSNAQSISNQLATQAEGIPSMEVISEEDYLRRDQSVLRWKMAHGYGRFNAAQ 136
Query: 138 QNPSAVENKLSNNYM-EDLCSNITVGDRCEVDPGAKR-GVVKYVGQAESIAPGFWVGIQY 195
Q+ A K Y E L + I R VD A R +++YVG G W G+++
Sbjct: 137 QSQRAALAKQDEAYAREQLTAAIGRHCRVTVDGSAPREAILRYVGPLPLDVMGTWCGVEF 196
Query: 196 DEPLGKHNGIVKGVRYF-ECPPLHGAMVRPDKVKV 229
E GK++G + GV F P HG+ VRP V++
Sbjct: 197 PEAAGKNDGRINGVTLFGPVAPGHGSFVRPRAVEI 231
>sp|Q14203|DCTN1_HUMAN Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 SV=3
Length = 1278
Score = 59.7 bits (143), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/98 (39%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 132 KEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWV 191
K V S+ PS S E + VG R EV RG V YVG A A G WV
Sbjct: 5 KRHVYSRTPSG-----SRMSAEASARPLRVGSRVEVIGKGHRGTVAYVG-ATLFATGKWV 58
Query: 192 GIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKV 229
G+ DE GK++G V+G +YF C HG VR +++V
Sbjct: 59 GVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQV 96
>sp|Q8CI96|CLIP4_MOUSE CAP-Gly domain-containing linker protein 4 OS=Mus musculus GN=Clip4
PE=1 SV=1
Length = 704
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 16/107 (14%)
Query: 133 EKVLSQNPS-----------AVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQ 181
+K LS++PS + + +N++ E + +G+R V G + G +K+ G
Sbjct: 450 KKTLSKSPSLPSRASAGLKSSATSAANNSHHE---GALHLGERVLV-VGQRVGTIKFFGT 505
Query: 182 AESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK 228
+ APG+W GI+ ++P GK++G V GV+YF C P +G P +V+
Sbjct: 506 T-NFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQ 551
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
+ +GDR V G K G +++ G E A G W GI+ DEP GK+NG V V+YF+C P +
Sbjct: 283 LKLGDRV-VIAGQKVGTLRFCGTTE-FASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKY 340
Query: 219 GAMVRPDKV 227
G K+
Sbjct: 341 GIFAPLSKI 349
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 174 GVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKV 227
V+YVG + A G W+G++ GK++G V RYF C P +G +VRP +V
Sbjct: 637 ATVRYVGPTD-FASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRV 689
>sp|Q66HD5|CLIP4_RAT CAP-Gly domain-containing linker protein 4 OS=Rattus norvegicus
GN=Clip4 PE=2 SV=1
Length = 599
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
+ +G+R V G + G +K+ G + APG+W GI+ ++P GK++G V GV+YF C P +
Sbjct: 485 LRLGERVLV-VGQRVGTIKFFGTT-NFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRY 542
Query: 219 GAMVRPDKVK 228
G P +V+
Sbjct: 543 GIFAPPSRVQ 552
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
+ +GDR V G K G +++ G E A G W GI+ DEP GK+NG V V+YF+C P +
Sbjct: 283 LKLGDRV-VIAGQKVGTLRFCGTTE-FASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKY 340
Query: 219 GAMVRPDKV-KVGD 231
G K+ KV D
Sbjct: 341 GIFAPLSKITKVKD 354
>sp|P28023|DCTN1_RAT Dynactin subunit 1 OS=Rattus norvegicus GN=Dctn1 PE=2 SV=2
Length = 1280
Score = 58.5 bits (140), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
+ VG R EV RG V YVG A A G WVG+ DE GK++G V+G +YF C H
Sbjct: 27 LRVGSRVEVIGKGHRGTVAYVG-ATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 85
Query: 219 GAMVRPDKVKV 229
G VR +++V
Sbjct: 86 GIFVRQSQIQV 96
>sp|Q6PCJ1|DCTN1_XENLA Dynactin subunit 1 OS=Xenopus laevis GN=dctn1 PE=2 SV=1
Length = 1232
Score = 58.5 bits (140), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
+ VG R EV RG V YVG A A G WVG+ D+ GK++G V+G RYF C H
Sbjct: 10 LKVGSRVEVIGKGYRGTVAYVG-ATLFATGKWVGVILDDSKGKNDGTVQGRRYFTCEENH 68
Query: 219 GAMVRPDKVKV 229
G VR +++V
Sbjct: 69 GIFVRQSQIQV 79
>sp|Q8N3C7|CLIP4_HUMAN CAP-Gly domain-containing linker protein 4 OS=Homo sapiens GN=CLIP4
PE=1 SV=1
Length = 705
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 19/122 (15%)
Query: 119 EEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITV---GDRCEVD------- 168
+ Y K+ K K +S++PS LS+ L S+ T RCE +
Sbjct: 438 QSYPKKQNAISSNK-KTMSKSPS-----LSSRASAGLNSSATSTANNSRCEGELRLGERV 491
Query: 169 --PGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDK 226
G + G +++ G + APG+W GI+ ++P GK++G V GV+YF C P +G P +
Sbjct: 492 LVVGQRLGTIRFFGTT-NFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSR 550
Query: 227 VK 228
V+
Sbjct: 551 VQ 552
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
+ +GDR V G K G +++ G E A G W GI+ DEP GK+NG V V+YF+C P +
Sbjct: 283 LKLGDRV-VIAGQKVGTLRFCGTTE-FASGQWAGIELDEPEGKNNGSVGKVQYFKCAPKY 340
Query: 219 GAMVRPDKV 227
G K+
Sbjct: 341 GIFAPLSKI 349
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 174 GVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKV 227
G V+YVG + A G W+G++ GK++G V RYF C P HG +VRP +V
Sbjct: 638 GTVRYVGPTD-FASGIWLGLELRSAKGKNDGSVGDKRYFTCKPNHGVLVRPSRV 690
>sp|O08788|DCTN1_MOUSE Dynactin subunit 1 OS=Mus musculus GN=Dctn1 PE=1 SV=3
Length = 1281
Score = 58.5 bits (140), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
+ VG R EV RG V YVG A A G WVG+ DE GK++G V+G +YF C H
Sbjct: 27 LRVGSRVEVIGKGHRGTVAYVG-ATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 85
Query: 219 GAMVRPDKVKV 229
G VR +++V
Sbjct: 86 GIFVRQSQIQV 96
>sp|P13496|DCTN1_DROME Dynactin subunit 1 OS=Drosophila melanogaster GN=Gl PE=1 SV=2
Length = 1265
Score = 58.5 bits (140), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 217
N+ VG R E+ G V YVG S A G WVG+ DEP GK++G +KG +YF+C
Sbjct: 5 NLKVGARVELTGKDLLGTVAYVGMT-SFAVGKWVGVVLDEPKGKNSGSIKGQQYFQCDEN 63
Query: 218 HGAMVRPDKVKV 229
G VRP ++++
Sbjct: 64 CGMFVRPTQLRL 75
>sp|P35458|DCTN1_CHICK Dynactin subunit 1 OS=Gallus gallus GN=DCTN1 PE=2 SV=2
Length = 1224
Score = 58.2 bits (139), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
+ VG R EV RG V YVG A A G WVG+ DE GK++G V+G +YF C H
Sbjct: 28 LKVGSRVEVIGKGHRGTVAYVG-ATLXATGKWVGVILDEAKGKNDGTVQGRKYFTCEENH 86
Query: 219 GAMVRPDKVKV 229
G VR +++V
Sbjct: 87 GIFVRQSQIQV 97
>sp|Q5U378|TBCE_DANRE Tubulin-specific chaperone E OS=Danio rerio GN=tbce PE=2 SV=2
Length = 521
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 160 TVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEP-LGKHNGIVKGVRYFEC-PPL 217
VG R D +RG V+YVG A G W+G+++D P GKH+G GVRYF C P
Sbjct: 6 AVGRRVCCD--GERGTVRYVGPVPPTA-GVWLGVEWDHPERGKHDGSHDGVRYFTCRHPT 62
Query: 218 HGAMVRPDKVKVG-DY 232
G+ VRP K G DY
Sbjct: 63 GGSFVRPQKASFGVDY 78
>sp|Q8CIV8|TBCE_MOUSE Tubulin-specific chaperone E OS=Mus musculus GN=Tbce PE=1 SV=1
Length = 524
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 152 MEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEP-LGKHNGIVKGVR 210
M D+ +G R EV+ + V++ G +A G W+G+++D P GKH+G +G
Sbjct: 1 MSDILPLDVIGRRVEVN--GEYATVRFCGAVPPVA-GLWLGVEWDNPERGKHDGSHEGTM 57
Query: 211 YFEC-PPLHGAMVRPDKVKVGD 231
YF+C P G+ VRP KV GD
Sbjct: 58 YFKCRHPTGGSFVRPSKVNFGD 79
>sp|Q5RBD9|TBCE_PONAB Tubulin-specific chaperone E OS=Pongo abelii GN=TBCE PE=2 SV=1
Length = 527
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 152 MEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEP-LGKHNGIVKGVR 210
M D + +G R EV+ + V++ G +A G W+G+++D P GKH+G +G
Sbjct: 1 MSDTLTADVIGQRVEVN--GEHATVRFAGVVPPVA-GPWLGVEWDNPERGKHDGSHEGTV 57
Query: 211 YFEC-PPLHGAMVRPDKVKVG 230
YF+C P G+ +RP+KV G
Sbjct: 58 YFQCRHPTGGSFIRPNKVNFG 78
>sp|Q5FVQ9|TBCE_RAT Tubulin-specific chaperone E OS=Rattus norvegicus GN=Tbce PE=2 SV=1
Length = 524
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 152 MEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEP-LGKHNGIVKGVR 210
M D+ +G R EV+ + V++ G +A G W+G+++D P GKH+G +G
Sbjct: 1 MSDILPLDVIGRRVEVN--GEYATVRFCGAVPPVA-GLWLGVEWDNPERGKHDGSHEGTM 57
Query: 211 YFEC-PPLHGAMVRPDKVKVGD 231
YF+C P G+ VRP+ V G+
Sbjct: 58 YFKCRHPTGGSFVRPNIVNFGE 79
>sp|Q15813|TBCE_HUMAN Tubulin-specific chaperone E OS=Homo sapiens GN=TBCE PE=1 SV=1
Length = 527
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 152 MEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEP-LGKHNGIVKGVR 210
M D + +G R EV+ + V++ G +A G W+G+++D P GKH+G +G
Sbjct: 1 MSDTLTADVIGRRVEVN--GEHATVRFAGVVPPVA-GPWLGVEWDNPERGKHDGSHEGTV 57
Query: 211 YFEC-PPLHGAMVRPDKVKVG 230
YF+C P G+ +RP+KV G
Sbjct: 58 YFKCRHPTGGSFIRPNKVNFG 78
>sp|Q32KS0|TBCE_BOVIN Tubulin-specific chaperone E OS=Bos taurus GN=TBCE PE=2 SV=1
Length = 528
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 152 MEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEP-LGKHNGIVKGVR 210
M ++ +G R EV+ + V++ G +A G W+G+++D P GKH+G +G
Sbjct: 1 MNSTSTSDVIGRRVEVN--GEHATVRFSGLVPPVA-GLWLGVEWDNPERGKHDGSHEGTV 57
Query: 211 YFEC-PPLHGAMVRPDKVKVG 230
YF+C P G+ +RP KV G
Sbjct: 58 YFKCRHPTAGSFIRPHKVNFG 78
>sp|Q5U508|TBCE_XENLA Tubulin-specific chaperone E OS=Xenopus laevis GN=tbce PE=2 SV=1
Length = 522
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 174 GVVKYVGQAESIAPGFWVGIQYDEPL-GKHNGIVKGVRYFECP-PLHGAMVRPDKVKVG 230
V+YVG PG W+G+++D L GKHNG +G +YF C P G+ +R K G
Sbjct: 21 ATVRYVGNVPP-TPGLWLGVEWDNHLRGKHNGTHEGTKYFTCSHPTGGSFIRLKKANFG 78
>sp|Q55CN0|TBCE_DICDI Tubulin-specific chaperone E OS=Dictyostelium discoideum GN=tbce
PE=3 SV=1
Length = 525
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 161 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEP-LGKHNGIVKGVRYFECPPL-H 218
+G+R + D G+ G ++Y G+ + G W GI++D+P GKH G VKG +YF+C
Sbjct: 15 IGERVKGDDGS-VGTIRYQGKVDGF-EGNWYGIEWDDPKRGKHQGTVKGKQYFKCINKGS 72
Query: 219 GAMVRPDKVKVGD 231
G+ ++ +K+ G+
Sbjct: 73 GSFMKYEKLIKGE 85
>sp|O42667|SSM4_SCHPO Microtubule-associated protein ssm4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssm4 PE=1 SV=1
Length = 670
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 157 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 216
S ++VGD EV + G+V++ G + G W+G++ GK++G VKG RYF C
Sbjct: 2 SYLSVGD--EVLIRGELGIVRFAGSTD-FESGIWLGVELLNGKGKNDGSVKGKRYFSCEK 58
Query: 217 LHGAMVRPDKVKVGDYP 233
G VR V P
Sbjct: 59 GKGIFVRACSSNVMKRP 75
>sp|P33420|NIP80_YEAST Protein NIP100 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NIP100 PE=1 SV=2
Length = 868
Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 173 RGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFE 213
+G VK++G+ + A G W GI+ D+PLGK++G G+RYF+
Sbjct: 27 KGRVKFIGETQ-FAKGIWYGIELDKPLGKNDGSANGIRYFD 66
>sp|P34531|YM92_CAEEL Uncharacterized protein M01A8.2 OS=Caenorhabditis elegans
GN=M01A8.2 PE=4 SV=4
Length = 937
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 173 RGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHG 219
+G ++YVG G + GI+ EP GKH+G +GV YF P HG
Sbjct: 32 KGFLRYVGPIHG-KDGMFCGIELLEPNGKHDGTFQGVSYFIATPYHG 77
>sp|A4XTN0|DNAE2_PSEMY Error-prone DNA polymerase OS=Pseudomonas mendocina (strain ymp)
GN=dnaE2 PE=3 SV=1
Length = 1026
Score = 40.0 bits (92), Expect = 0.013, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 74 NSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDG--TF 128
NS P+GFYSP LQ R H I++ P+ V W D SL E+ + R G
Sbjct: 748 NSWPMGFYSPDQVLQDARRHGIEVRPADVRHSAW--DCSLEPS---DGEQPAIRLGLRLL 802
Query: 129 RKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDR---CEVDPGAKRGV 175
R F+E+ + A ++DLC T+ R C D GA RG+
Sbjct: 803 RGFREED-ALRIEATRQAAPFTDVDDLCRRATLDARARECLADAGALRGL 851
>sp|A1KCL7|DNAE2_AZOSB Error-prone DNA polymerase OS=Azoarcus sp. (strain BH72) GN=dnaE2
PE=3 SV=1
Length = 1064
Score = 37.0 bits (84), Expect = 0.12, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 6/40 (15%)
Query: 74 NSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGW---LED 107
NS+P+GFY+P LQ R H +++ P VT+ W LED
Sbjct: 781 NSQPMGFYAPAQLLQDARRHGVEVRPVDVTASAWDATLED 820
>sp|P11709|BIK1_YEAST Nuclear fusion protein BIK1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BIK1 PE=1 SV=1
Length = 440
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 169 PGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECP-PLHGAMVRPDKV 227
P RG +KYVG ++ A G + G+ +GK++G G +YF+ P G ++ KV
Sbjct: 15 PNLGRGQLKYVGPVDTKA-GMFAGVDLLANIGKNDGSFMGKKYFQTEYPQSGLFIQLQKV 73
>sp|Q9I5Q2|DNAE2_PSEAE Error-prone DNA polymerase OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dnaE2 PE=3
SV=1
Length = 1031
Score = 34.3 bits (77), Expect = 0.82, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 74 NSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGWLEDTSL 110
NS P+GFYSP LQ R H + P V GW D SL
Sbjct: 752 NSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGW--DCSL 789
>sp|P39937|PAC2_YEAST Protein PAC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PAC2 PE=1 SV=1
Length = 518
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 161 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDE-PLGKHNGIVKGVRYFECP-PLH 218
+GDR ++ G +K++G + G+++D+ GKH+G + + YF+ P
Sbjct: 5 IGDRLKI--GGYFCTIKFIGVIKPWPSVKAYGVEWDDHSRGKHSGTIDDIHYFDVQIPNS 62
Query: 219 GAMVRPDKVK 228
G+ ++ K+K
Sbjct: 63 GSFLKESKIK 72
>sp|Q7WHW8|DNAE2_BORBR Error-prone DNA polymerase OS=Bordetella bronchiseptica (strain
ATCC BAA-588 / NCTC 13252 / RB50) GN=dnaE2 PE=3 SV=1
Length = 1052
Score = 32.7 bits (73), Expect = 2.1, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 68 VAALTDNSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGW 104
+AAL NS+P+GFY+P +Q R H + + P+ V GW
Sbjct: 762 LAALL-NSQPMGFYAPAQLVQDARRHGVRVLPADVLYSGW 800
>sp|Q7W9W1|DNAE2_BORPA Error-prone DNA polymerase OS=Bordetella parapertussis (strain
12822 / ATCC BAA-587 / NCTC 13253) GN=dnaE2 PE=3 SV=1
Length = 1052
Score = 32.7 bits (73), Expect = 2.1, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 68 VAALTDNSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGW 104
+AAL NS+P+GFY+P +Q R H + + P+ V GW
Sbjct: 762 LAALL-NSQPMGFYAPAQLVQDARRHGVRVLPADVLYSGW 800
>sp|Q48IB1|DNAE2_PSE14 Error-prone DNA polymerase OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=dnaE2 PE=3 SV=1
Length = 1031
Score = 32.7 bits (73), Expect = 2.6, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 74 NSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGWLEDTSL 110
NS P+GFYSP LQ R H I++ P V W D SL
Sbjct: 749 NSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDW--DCSL 786
>sp|Q4ZTG0|DNAE2_PSEU2 Error-prone DNA polymerase OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=dnaE2 PE=3 SV=1
Length = 1031
Score = 32.7 bits (73), Expect = 2.7, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 74 NSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGWLEDTSL 110
NS P+GFYSP LQ R H I++ P V W D SL
Sbjct: 749 NSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDW--DCSL 786
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,313,624
Number of Sequences: 539616
Number of extensions: 3938996
Number of successful extensions: 6424
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 6336
Number of HSP's gapped (non-prelim): 80
length of query: 243
length of database: 191,569,459
effective HSP length: 114
effective length of query: 129
effective length of database: 130,053,235
effective search space: 16776867315
effective search space used: 16776867315
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)