Query 026104
Match_columns 243
No_of_seqs 215 out of 1080
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:49:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026104.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026104hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3206 Alpha-tubulin folding 100.0 3.4E-70 7.4E-75 463.1 18.8 225 13-243 1-234 (234)
2 PF01302 CAP_GLY: CAP-Gly doma 99.9 9.2E-27 2E-31 169.0 7.8 68 161-228 1-69 (69)
3 PF14560 Ubiquitin_2: Ubiquiti 99.9 1.6E-24 3.4E-29 163.3 10.1 86 13-98 1-87 (87)
4 cd01789 Alp11_N Ubiquitin-like 99.9 9.7E-24 2.1E-28 158.5 10.7 84 13-97 1-84 (84)
5 KOG0971 Microtubule-associated 99.8 1.5E-19 3.2E-24 179.1 6.5 73 156-229 3-75 (1243)
6 COG5244 NIP100 Dynactin comple 99.8 2.6E-19 5.6E-24 168.1 6.7 67 158-227 3-69 (669)
7 KOG3207 Beta-tubulin folding c 99.6 4.2E-16 9.2E-21 146.4 7.1 70 158-230 2-73 (505)
8 KOG4568 Cytoskeleton-associate 99.6 8E-16 1.7E-20 152.2 4.7 74 154-229 13-86 (664)
9 cd01806 Nedd8 Nebb8-like ubiq 99.4 8.5E-13 1.8E-17 95.7 7.5 72 14-94 1-72 (76)
10 PTZ00044 ubiquitin; Provisiona 99.4 8.7E-13 1.9E-17 96.2 7.2 71 14-93 1-71 (76)
11 cd01809 Scythe_N Ubiquitin-lik 99.4 9.4E-13 2E-17 94.5 7.2 71 14-93 1-71 (72)
12 cd01791 Ubl5 UBL5 ubiquitin-li 99.4 1.3E-12 2.9E-17 95.7 7.8 71 13-92 1-71 (73)
13 cd01812 BAG1_N Ubiquitin-like 99.4 1.6E-12 3.4E-17 93.3 7.0 69 14-92 1-69 (71)
14 cd01793 Fubi Fubi ubiquitin-li 99.3 3.8E-12 8.2E-17 92.9 7.1 68 14-92 1-68 (74)
15 cd01799 Hoil1_N Ubiquitin-like 99.3 4.2E-12 9E-17 93.5 7.0 60 26-92 13-73 (75)
16 cd01800 SF3a120_C Ubiquitin-li 99.3 3.7E-12 7.9E-17 93.6 6.2 65 23-94 5-69 (76)
17 cd01807 GDX_N ubiquitin-like d 99.3 6.5E-12 1.4E-16 91.6 7.3 71 14-93 1-71 (74)
18 cd01803 Ubiquitin Ubiquitin. U 99.3 6.3E-12 1.4E-16 91.1 7.2 71 14-93 1-71 (76)
19 cd01797 NIRF_N amino-terminal 99.3 1.3E-11 2.8E-16 91.4 7.0 71 14-93 1-73 (78)
20 cd01790 Herp_N Homocysteine-re 99.3 1E-11 2.3E-16 92.3 6.5 72 14-92 2-77 (79)
21 cd01802 AN1_N ubiquitin-like d 99.3 2.2E-11 4.9E-16 94.8 8.1 74 11-93 25-98 (103)
22 cd01794 DC_UbP_C dendritic cel 99.3 1.5E-11 3.4E-16 89.2 6.5 63 23-92 6-68 (70)
23 cd01798 parkin_N amino-termina 99.2 1.8E-11 4E-16 88.1 6.8 68 16-92 1-68 (70)
24 cd01796 DDI1_N DNA damage indu 99.2 1.7E-11 3.7E-16 89.0 6.3 63 24-92 8-70 (71)
25 cd01808 hPLIC_N Ubiquitin-like 99.2 2.6E-11 5.7E-16 87.6 6.9 69 14-92 1-69 (71)
26 KOG0005 Ubiquitin-like protein 99.2 8E-12 1.7E-16 87.4 3.7 64 22-92 7-70 (70)
27 cd01804 midnolin_N Ubiquitin-l 99.2 3.7E-11 8.1E-16 88.8 7.5 71 14-94 2-72 (78)
28 cd01813 UBP_N UBP ubiquitin pr 99.2 4.6E-11 1E-15 87.6 7.4 72 14-92 1-72 (74)
29 cd01810 ISG15_repeat2 ISG15 ub 99.2 4.4E-11 9.5E-16 87.2 6.8 69 16-93 1-69 (74)
30 cd01792 ISG15_repeat1 ISG15 ub 99.2 4.7E-11 1E-15 88.5 7.0 73 14-93 3-75 (80)
31 PF00240 ubiquitin: Ubiquitin 99.2 6.4E-11 1.4E-15 84.5 6.9 63 23-92 3-65 (69)
32 cd01805 RAD23_N Ubiquitin-like 99.2 1.1E-10 2.3E-15 85.2 7.6 74 14-96 1-76 (77)
33 KOG4568 Cytoskeleton-associate 99.1 1.1E-11 2.4E-16 123.1 0.9 77 156-234 152-228 (664)
34 KOG3556 Familial cylindromatos 99.1 1.9E-10 4.2E-15 109.9 6.8 80 156-236 233-322 (724)
35 cd01795 USP48_C USP ubiquitin- 99.1 1.3E-10 2.7E-15 89.4 4.4 82 29-121 18-99 (107)
36 cd01815 BMSC_UbP_N Ubiquitin-l 99.0 4.9E-10 1.1E-14 82.5 4.5 54 33-93 18-74 (75)
37 smart00213 UBQ Ubiquitin homol 99.0 1.1E-09 2.4E-14 76.1 6.2 64 14-87 1-64 (64)
38 KOG0241 Kinesin-like protein [ 99.0 3.6E-10 7.7E-15 113.9 3.8 69 156-230 1628-1696(1714)
39 cd01769 UBL Ubiquitin-like dom 98.9 3.8E-09 8.3E-14 74.3 6.8 62 25-93 7-68 (69)
40 cd01763 Sumo Small ubiquitin-r 98.9 9.1E-09 2E-13 77.5 8.7 75 9-92 7-81 (87)
41 KOG0004 Ubiquitin/40S ribosoma 98.8 2.6E-09 5.6E-14 88.1 3.2 70 15-93 2-71 (156)
42 KOG0010 Ubiquitin-like protein 98.7 2.4E-08 5.2E-13 95.4 6.9 75 12-96 14-88 (493)
43 KOG0003 Ubiquitin/60s ribosoma 98.7 2.7E-09 5.8E-14 83.0 0.1 64 23-93 8-71 (128)
44 TIGR00601 rad23 UV excision re 98.7 4.2E-08 9E-13 92.4 7.7 74 14-96 1-77 (378)
45 PLN02560 enoyl-CoA reductase 98.7 8.9E-08 1.9E-12 87.9 8.6 81 15-97 2-86 (308)
46 cd01814 NTGP5 Ubiquitin-like N 98.6 3E-08 6.4E-13 78.1 3.2 76 13-96 4-92 (113)
47 PF11976 Rad60-SLD: Ubiquitin- 98.5 6.7E-07 1.5E-11 64.3 6.8 70 14-92 1-71 (72)
48 cd01811 OASL_repeat1 2'-5' oli 98.2 1E-05 2.2E-10 59.2 7.6 68 27-97 12-79 (80)
49 KOG0011 Nucleotide excision re 98.2 3E-06 6.6E-11 77.7 5.8 72 14-94 1-74 (340)
50 cd01801 Tsc13_N Ubiquitin-like 98.2 5.4E-06 1.2E-10 60.9 6.0 57 33-94 20-77 (77)
51 KOG4248 Ubiquitin-like protein 97.9 1.3E-05 2.9E-10 82.3 5.9 73 14-96 3-75 (1143)
52 cd00196 UBQ Ubiquitin-like pro 97.8 0.00011 2.3E-09 48.1 6.4 61 26-93 8-68 (69)
53 PF11543 UN_NPL4: Nuclear pore 97.6 7.1E-05 1.5E-09 55.8 4.2 75 13-92 4-78 (80)
54 KOG0001 Ubiquitin and ubiquiti 97.6 0.00038 8.2E-09 48.1 7.3 65 23-94 7-71 (75)
55 PF13881 Rad60-SLD_2: Ubiquiti 97.4 0.00083 1.8E-08 53.1 7.5 72 14-94 3-88 (111)
56 cd01788 ElonginB Ubiquitin-lik 97.3 0.00091 2E-08 52.9 7.0 49 28-83 14-62 (119)
57 cd06406 PB1_P67 A PB1 domain i 96.4 0.0098 2.1E-07 44.4 5.6 48 13-66 4-51 (80)
58 PF08817 YukD: WXG100 protein 96.1 0.0086 1.9E-07 44.0 4.2 73 13-91 2-78 (79)
59 KOG1872 Ubiquitin-specific pro 96.1 0.016 3.6E-07 55.7 7.1 73 14-95 4-76 (473)
60 KOG3493 Ubiquitin-like protein 96.0 0.0028 6.1E-08 45.3 1.1 62 23-91 9-70 (73)
61 KOG2982 Uncharacterized conser 95.8 0.016 3.4E-07 53.7 5.2 66 27-92 349-415 (418)
62 KOG4495 RNA polymerase II tran 95.3 0.012 2.7E-07 45.2 2.3 49 30-83 16-64 (110)
63 PF00789 UBX: UBX domain; Int 95.2 0.21 4.5E-06 36.4 8.7 77 10-92 3-81 (82)
64 smart00666 PB1 PB1 domain. Pho 94.9 0.12 2.6E-06 37.5 6.6 53 14-69 2-54 (81)
65 PF14836 Ubiquitin_3: Ubiquiti 94.6 0.56 1.2E-05 35.6 9.7 68 26-95 14-81 (88)
66 PF13019 Telomere_Sde2: Telome 94.0 0.29 6.2E-06 41.2 7.7 65 14-83 1-69 (162)
67 cd06407 PB1_NLP A PB1 domain i 94.0 0.33 7.1E-06 36.2 7.2 43 27-69 11-54 (82)
68 PTZ00243 ABC transporter; Prov 93.6 0.083 1.8E-06 58.3 4.7 59 156-214 122-196 (1560)
69 KOG1639 Steroid reductase requ 93.5 0.18 3.9E-06 45.3 5.9 68 26-97 13-82 (297)
70 PF00564 PB1: PB1 domain; Int 93.1 0.35 7.6E-06 35.1 6.0 54 14-69 2-55 (84)
71 PRK10708 hypothetical protein; 92.9 0.55 1.2E-05 32.8 6.2 56 159-225 1-61 (62)
72 PF10781 DSRB: Dextransucrase 92.6 0.65 1.4E-05 32.4 6.3 56 159-225 1-61 (62)
73 cd01774 Faf1_like2_UBX Faf1 ik 92.2 1.1 2.3E-05 33.6 7.6 80 11-94 2-85 (85)
74 cd05992 PB1 The PB1 domain is 91.9 0.71 1.5E-05 33.2 6.3 43 27-69 11-54 (81)
75 cd06398 PB1_Joka2 The PB1 doma 90.9 1.3 2.7E-05 33.8 7.0 36 34-69 23-59 (91)
76 cd06397 PB1_UP1 Uncharacterize 89.9 1.5 3.2E-05 32.8 6.3 63 15-81 2-64 (82)
77 KOG4583 Membrane-associated ER 89.4 0.19 4.2E-06 46.8 1.7 67 9-82 5-73 (391)
78 KOG0006 E3 ubiquitin-protein l 89.2 1.1 2.5E-05 41.6 6.5 62 28-96 16-77 (446)
79 cd06408 PB1_NoxR The PB1 domai 89.1 1.8 4E-05 32.7 6.5 50 14-68 3-52 (86)
80 smart00166 UBX Domain present 88.6 5.2 0.00011 29.0 8.5 74 12-91 3-78 (80)
81 cd01772 SAKS1_UBX SAKS1-like U 88.3 4.5 9.7E-05 29.6 8.1 75 13-92 4-78 (79)
82 cd06396 PB1_NBR1 The PB1 domai 88.0 3 6.5E-05 31.2 6.9 50 14-68 1-52 (81)
83 COG5417 Uncharacterized small 87.9 2.4 5.2E-05 31.3 6.2 69 14-91 7-80 (81)
84 cd06411 PB1_p51 The PB1 domain 87.1 1.3 2.8E-05 32.9 4.5 41 26-66 7-47 (78)
85 cd01771 Faf1_UBX Faf1 UBX doma 86.6 8.9 0.00019 28.3 8.8 77 11-92 2-78 (80)
86 PF08337 Plexin_cytopl: Plexin 86.1 3.4 7.5E-05 41.0 8.2 84 11-95 187-290 (539)
87 cd01767 UBX UBX (ubiquitin reg 83.6 9.1 0.0002 27.5 7.6 71 14-91 3-74 (77)
88 cd01770 p47_UBX p47-like ubiqu 82.4 13 0.00028 27.3 8.1 71 13-89 4-75 (79)
89 KOG1769 Ubiquitin-like protein 81.6 14 0.00031 28.6 8.2 74 11-93 18-91 (99)
90 cd06409 PB1_MUG70 The MUG70 pr 80.5 8.1 0.00018 29.2 6.5 47 23-69 8-57 (86)
91 PF14732 UAE_UbL: Ubiquitin/SU 77.8 2.7 5.8E-05 31.6 3.2 57 34-95 7-70 (87)
92 PF10302 DUF2407: DUF2407 ubiq 75.7 10 0.00022 29.1 5.9 48 14-67 3-54 (97)
93 cd06404 PB1_aPKC PB1 domain is 75.1 16 0.00035 27.5 6.6 66 27-92 11-81 (83)
94 PF14533 USP7_C2: Ubiquitin-sp 73.6 14 0.00031 32.1 7.0 79 13-94 20-101 (213)
95 PRK08364 sulfur carrier protei 72.3 32 0.00069 24.4 7.6 50 27-92 15-64 (70)
96 PF00788 RA: Ras association ( 72.2 16 0.00034 26.4 6.1 66 12-78 3-71 (93)
97 KOG0013 Uncharacterized conser 71.0 10 0.00022 33.4 5.4 58 31-95 162-221 (231)
98 cd01773 Faf1_like1_UBX Faf1 ik 69.9 43 0.00093 25.0 7.9 77 13-94 5-81 (82)
99 PF09926 DUF2158: Uncharacteri 68.4 23 0.0005 24.3 5.7 43 159-202 1-43 (53)
100 cd00754 MoaD Ubiquitin domain 66.2 26 0.00056 24.7 6.0 53 28-92 18-74 (80)
101 PF10209 DUF2340: Uncharacteri 64.7 18 0.00038 29.2 5.2 31 32-62 22-63 (122)
102 PF11470 TUG-UBL1: GLUT4 regul 64.7 16 0.00035 26.0 4.5 59 25-90 6-64 (65)
103 cd06410 PB1_UP2 Uncharacterize 64.4 31 0.00068 26.4 6.4 36 27-63 24-59 (97)
104 PRK06437 hypothetical protein; 61.0 34 0.00074 24.1 5.7 51 27-93 12-62 (67)
105 KOG4250 TANK binding protein k 57.3 19 0.00041 37.0 5.1 38 24-61 323-360 (732)
106 cd01775 CYR1_RA Ubiquitin doma 54.0 1E+02 0.0022 23.9 7.7 46 13-62 4-50 (97)
107 cd00565 ThiS ThiaminS ubiquiti 53.1 57 0.0012 22.5 5.7 52 29-92 8-59 (65)
108 PF08825 E2_bind: E2 binding d 53.0 4.4 9.6E-05 30.3 -0.0 63 30-95 1-72 (84)
109 TIGR01683 thiS thiamine biosyn 51.5 59 0.0013 22.4 5.6 52 29-92 7-58 (64)
110 TIGR02958 sec_mycoba_snm4 secr 50.5 96 0.0021 30.2 8.7 74 13-93 2-79 (452)
111 COG3462 Predicted membrane pro 46.1 7.5 0.00016 30.7 0.2 17 113-129 100-116 (117)
112 PRK05659 sulfur carrier protei 45.3 92 0.002 21.3 5.8 53 29-93 9-61 (66)
113 PRK07440 hypothetical protein; 43.3 1.2E+02 0.0026 21.5 7.0 53 29-93 13-65 (70)
114 PRK06083 sulfur carrier protei 41.4 1.5E+02 0.0032 22.1 7.1 66 9-93 14-79 (84)
115 PF09379 FERM_N: FERM N-termin 41.2 1.2E+02 0.0027 21.2 7.4 58 25-84 6-65 (80)
116 PRK06488 sulfur carrier protei 39.4 1.1E+02 0.0024 20.9 5.5 51 30-93 10-60 (65)
117 smart00295 B41 Band 4.1 homolo 38.3 1.5E+02 0.0033 24.3 7.1 37 26-62 14-51 (207)
118 PF09851 SHOCT: Short C-termin 37.6 18 0.00039 21.8 0.9 15 115-129 16-30 (31)
119 smart00739 KOW KOW (Kyprides, 37.5 39 0.00084 18.8 2.4 18 159-176 2-19 (28)
120 PF12436 USP7_ICP0_bdg: ICP0-b 36.2 1E+02 0.0022 27.3 6.0 48 14-61 177-225 (249)
121 smart00314 RA Ras association 35.8 1.7E+02 0.0037 21.2 7.5 42 12-54 3-44 (90)
122 TIGR00739 yajC preprotein tran 34.9 39 0.00085 25.2 2.6 27 154-181 33-59 (84)
123 cd06402 PB1_p62 The PB1 domain 34.5 1.1E+02 0.0023 23.1 5.0 36 34-69 25-61 (87)
124 TIGR02266 gmx_TIGR02266 Myxoco 33.6 1.2E+02 0.0027 21.9 5.2 41 157-198 35-83 (96)
125 PF08783 DWNN: DWNN domain; I 33.4 67 0.0015 23.5 3.6 39 27-65 11-51 (74)
126 cd01787 GRB7_RA RA (RAS-associ 32.1 1.4E+02 0.003 22.5 5.2 39 13-55 4-42 (85)
127 cd01782 AF6_RA_repeat1 Ubiquit 31.8 2.6E+02 0.0057 22.2 8.2 66 12-78 22-92 (112)
128 PRK05863 sulfur carrier protei 30.6 1.8E+02 0.0038 20.1 5.3 51 29-92 9-59 (65)
129 PF14801 GCD14_N: tRNA methylt 29.1 35 0.00076 23.6 1.4 46 158-206 5-52 (54)
130 PF14533 USP7_C2: Ubiquitin-sp 28.8 1.1E+02 0.0023 26.6 4.7 51 12-62 116-172 (213)
131 COG5227 SMT3 Ubiquitin-like pr 28.8 1.5E+02 0.0032 22.8 4.8 71 13-92 24-94 (103)
132 PF15290 Syntaphilin: Golgi-lo 28.7 24 0.00052 32.4 0.7 21 201-221 22-52 (305)
133 cd02413 40S_S3_KH K homology R 27.8 2.2E+02 0.0048 20.9 5.6 27 34-60 48-74 (81)
134 PRK05886 yajC preprotein trans 27.0 61 0.0013 25.5 2.6 35 154-196 34-68 (109)
135 PRK08053 sulfur carrier protei 26.8 2.2E+02 0.0047 19.6 6.0 53 28-92 8-60 (66)
136 PRK06531 yajC preprotein trans 26.6 60 0.0013 25.7 2.5 27 154-181 32-58 (113)
137 TIGR01682 moaD molybdopterin c 26.6 2E+02 0.0043 20.5 5.2 23 28-50 18-41 (80)
138 smart00455 RBD Raf-like Ras-bi 26.4 2.1E+02 0.0046 20.3 5.2 36 26-61 10-45 (70)
139 PF15044 CLU_N: Mitochondrial 26.4 1.3E+02 0.0029 21.7 4.2 55 32-93 1-57 (76)
140 PRK05585 yajC preprotein trans 26.3 63 0.0014 25.2 2.6 27 154-181 48-74 (106)
141 PF10016 DUF2259: Predicted se 26.0 43 0.00093 28.9 1.7 27 79-105 3-34 (198)
142 cd01817 RGS12_RBD Ubiquitin do 25.7 2.7E+02 0.0059 20.4 5.6 51 27-79 11-61 (73)
143 PF02017 CIDE-N: CIDE-N domain 25.6 1.1E+02 0.0023 22.7 3.5 33 35-68 20-52 (78)
144 CHL00141 rpl24 ribosomal prote 25.2 80 0.0017 23.5 2.9 23 157-179 7-32 (83)
145 PF10790 DUF2604: Protein of U 25.0 77 0.0017 22.9 2.6 56 31-92 11-69 (76)
146 PRK07696 sulfur carrier protei 25.0 2.4E+02 0.0053 19.6 5.5 53 29-93 9-62 (67)
147 PF10500 SR-25: Nuclear RNA-sp 24.4 30 0.00066 30.6 0.5 22 115-142 159-180 (225)
148 PF14001 YdfZ: YdfZ protein 24.2 93 0.002 22.2 2.8 22 158-179 9-30 (64)
149 cd01760 RBD Ubiquitin-like dom 24.0 1.8E+02 0.004 20.9 4.5 37 27-63 11-47 (72)
150 PRK12281 rplX 50S ribosomal pr 23.6 90 0.002 22.8 2.8 23 157-179 5-30 (76)
151 TIGR01584 citF citrate lyase, 23.3 1E+02 0.0022 30.5 3.9 21 34-54 445-465 (492)
152 PF12949 HeH: HeH/LEM domain; 22.8 59 0.0013 20.4 1.5 16 33-48 1-16 (35)
153 KOG4147 Uncharacterized conser 22.6 79 0.0017 25.1 2.5 58 32-89 29-108 (127)
154 COG5466 Predicted small metal- 22.5 66 0.0014 22.6 1.8 19 207-225 1-22 (59)
155 smart00266 CAD Domains present 22.2 2E+02 0.0044 21.1 4.4 34 34-68 17-50 (74)
156 cd01615 CIDE_N CIDE_N domain, 22.0 2E+02 0.0043 21.3 4.4 34 34-68 19-52 (78)
157 PF12436 USP7_ICP0_bdg: ICP0-b 21.8 2E+02 0.0043 25.5 5.3 84 11-95 66-153 (249)
158 cd06539 CIDE_N_A CIDE_N domain 20.8 2.3E+02 0.0049 21.1 4.4 34 34-68 19-52 (78)
159 cd04712 BAH_DCM_I BAH, or Brom 20.5 2.3E+02 0.0049 22.7 4.8 65 157-233 4-68 (130)
160 PF00276 Ribosomal_L23: Riboso 20.3 2E+02 0.0044 21.5 4.3 36 27-62 22-57 (91)
161 cd01768 RA RA (Ras-associating 20.1 3.3E+02 0.0072 19.3 8.8 53 27-79 14-68 (87)
No 1
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-70 Score=463.12 Aligned_cols=225 Identities=45% Similarity=0.790 Sum_probs=198.7
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
+|.|+|+|++.. +..|+|+++++||.+||.||+..||+++++|+|+|++.+++.+..|+++++.|++|+..||.+|||+
T Consensus 1 ~v~v~Iss~~~~-~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi 79 (234)
T KOG3206|consen 1 MVRVVISSSLND-FRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVI 79 (234)
T ss_pred CeEEEEeccccc-chhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence 589999877554 4899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcccCCCccccCCcceeeecCHHHHhcchhhHHHHHHHhhc--CCCchhhhcc----ccchhhhhcCCCCCCCEEE
Q 026104 93 DLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLS--QNPSAVENKL----SNNYMEDLCSNITVGDRCE 166 (243)
Q Consensus 93 D~~p~s~~~~~~l~d~s~veky~msee~Y~~r~dtvr~~kk~~~~--~~p~~~~~~~----~~~~~~~~~~~~~vG~rv~ 166 (243)
|.++.|+++ ++|+|.||||+||+|+|.+|+||||+||++++. ||.+...++. +....+.....+.||.||+
T Consensus 80 D~~~~~~~~---~~d~s~veky~iSee~Y~qRtdSvr~~kk~~~~gryn~~~~~q~ea~~~~~~~e~~~~~~i~vG~rCe 156 (234)
T KOG3206|consen 80 DSNAQSISN---TEDESIVEKYEISEEDYLQRTDSVRRFKKKHGYGRYNAEEQAQAEAEAKQDLAEERAQATIAVGRRCE 156 (234)
T ss_pred ecCcccccc---ccccccceeeecCHHHHhhhhHHHHHHHHHhcccccchhhhhHHHHHhHHHHHHHHHhhccccCCeeE
Confidence 999988753 899999999999999999999999999999875 5544322111 1111112233499999999
Q ss_pred Ec-CC--CceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCCCCCCCCCCCCCC
Q 026104 167 VD-PG--AKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI 243 (243)
Q Consensus 167 v~-~~--~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f~~~d~~~~dE~ 243 (243)
|. ++ +|||+|||+|++++ ++|+||||++|||+|||||+++|+|||+|+|+||.||+|..|++|||||.| |++|||
T Consensus 157 Vtv~G~~~Rrg~vrYvG~~~~-k~G~wiGVeydEplGKnDGsv~G~ryF~c~p~yGgfVrP~~V~VgdfpeeD-~~~DEi 234 (234)
T KOG3206|consen 157 VTVPGQAPRRGTVRYVGPLEF-KPGYWIGVEYDEPLGKNDGSVNGKRYFECAPKYGGFVRPRAVTVGDFPEED-FSDDEI 234 (234)
T ss_pred EecCCCCCcceEEEEecccCC-CCceEEEEecCCccccCCCcccceEeeecCCccCCccccceeeecCCChhh-cccccC
Confidence 96 55 69999999999998 999999999999999999999999999999999999999999999999988 888887
No 2
>PF01302 CAP_GLY: CAP-Gly domain; InterPro: IPR000938 Cytoskeleton-associated proteins (CAP) are made of three distinct parts, an N-terminal section that is most probably globular and contains the CAP-Gly domain, a large central region predicted to be in an alpha-helical coiled-coil conformation and, finally, a short C-terminal globular domain. The CAP-Gly domain is a conserved, glycine-rich domain of about 42 residues found in some CAPs []. Proteins known to contain this domain include restin (also known as cytoplasmic linker protein-170 or CLIP-170), a 160 kDa protein associated with intermediate filaments and that links endocytic vesicles to microtubules; vertebrate dynactin (150 kDa dynein-associated polypeptide; DAP) and Drosophila glued, a major component of activator I; yeast protein BIK1, which seems to be required for the formation or stabilisation of microtubules during mitosis and for spindle pole body fusion during conjugation; yeast protein NIP100 (NIP80); human protein CKAP1/TFCB; Schizosaccharomyces pombe protein alp11 and Caenorhabditis elegans hypothetical protein F53F4.3. The latter proteins contain a N-terminal ubiquitin domain and a C-terminal CAP-Gly domain. The crystal structure of the CAP-Gly domain of C. elegans F53F4.3 protein, solved by single wavelength sulphur-anomalous phasing, revealed a novel protein fold containing three beta-sheets. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Residues in the groove are highly conserved as measured from the information content of the aligned sequences. The C-terminal tail of another molecule in the crystal is bound in this groove []. ; PDB: 2CP6_A 2E4H_A 2E3H_A 3E2U_B 2HL3_B 3TQ7_Q 2HKQ_B 2HQH_A 2HKN_B 2HL5_C ....
Probab=99.94 E-value=9.2e-27 Score=169.01 Aligned_cols=68 Identities=59% Similarity=1.205 Sum_probs=60.5
Q ss_pred CCCEEEEc-CCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcc
Q 026104 161 VGDRCEVD-PGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK 228 (243)
Q Consensus 161 vG~rv~v~-~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~ 228 (243)
||+||+|. +..++|+|||+|+++..++|.|+|||||+|.|+|||+++|+|||+|+|+||+||++++|+
T Consensus 1 VG~rV~v~~~~~~~G~vryiG~~~~~~~g~~vGVEld~~~G~~dGt~~G~rYF~c~~~~G~Fv~~~~v~ 69 (69)
T PF01302_consen 1 VGDRVRVDDPGGRRGTVRYIGPVPGFKSGIWVGVELDEPRGKNDGTVKGKRYFECPPNHGIFVRPSKVE 69 (69)
T ss_dssp TTSEEEESSTTTEEEEEEEEEE-SSSSSSEEEEEEESSSTSSBSSEETTEESS-SSTTTEEEEEGGGE-
T ss_pred CCCEEEEeeCCCCEEEEEEEeeCCCCCCCEEEEEEEcCCCCCCCcEECCEEEeeeCCCCEEEecHHHCC
Confidence 79999993 358999999999999547899999999999999999999999999999999999999885
No 3
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=99.91 E-value=1.6e-24 Score=163.32 Aligned_cols=86 Identities=38% Similarity=0.574 Sum_probs=75.5
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEE-cCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELY-DDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~-~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV 91 (243)
+|+|+|||++...++.|+||+++|||++||+||+.+||+||++|+|.++ +.++..+..+++|+++|++||+++|++|||
T Consensus 1 ~v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V 80 (87)
T PF14560_consen 1 VVKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV 80 (87)
T ss_dssp EEEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred CEEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence 5899999998877899999999999999999999999999999999999 567778888999999999999999999999
Q ss_pred eecCCCc
Q 026104 92 IDLDPSS 98 (243)
Q Consensus 92 vD~~p~s 98 (243)
+|++|+|
T Consensus 81 ~D~~p~s 87 (87)
T PF14560_consen 81 VDTNPSS 87 (87)
T ss_dssp EE-T---
T ss_pred EeCCCCC
Confidence 9999976
No 4
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.90 E-value=9.7e-24 Score=158.52 Aligned_cols=84 Identities=33% Similarity=0.536 Sum_probs=77.5
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
+|+|+|+++. +.++.|+||+++|||++||+||+.+||+||+.|+|+++++.+..++.|++|+++|++|++++|++|||+
T Consensus 1 ~v~v~i~~~~-~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 1 TVTVNITSSA-DSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred CEEEEEEeCC-CceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 4789998775 678999999999999999999999999999999999998887777778999999999999999999999
Q ss_pred ecCCC
Q 026104 93 DLDPS 97 (243)
Q Consensus 93 D~~p~ 97 (243)
|++|.
T Consensus 80 D~~p~ 84 (84)
T cd01789 80 DVSGT 84 (84)
T ss_pred eCCCC
Confidence 99984
No 5
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=99.78 E-value=1.5e-19 Score=179.10 Aligned_cols=73 Identities=47% Similarity=0.805 Sum_probs=68.7
Q ss_pred cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCccc
Q 026104 156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKV 229 (243)
Q Consensus 156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~ 229 (243)
...++||.||+|..++.+|+|.|||.+.| ..|.||||-||||.||||||++|.+||+|++|||+|||++.|.+
T Consensus 3 ~r~lkvG~RVevtgknl~G~VayvG~T~F-A~G~WvGVvLDep~GKNnGsVqg~qYF~Cd~ncG~FVr~sq~r~ 75 (1243)
T KOG0971|consen 3 PRSLKVGTRVEVTGKNLQGTVAYVGQTQF-AEGKWVGVVLDEPKGKNNGSVQGVQYFECDENCGVFVRSSQVRE 75 (1243)
T ss_pred CccccccceEEeccCCccceEEEeccccc-ccCceEEEEeccccCCCCCcccceeeEecCCCcceEeehhhhHH
Confidence 45799999999986688999999999999 89999999999999999999999999999999999999999654
No 6
>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]
Probab=99.77 E-value=2.6e-19 Score=168.15 Aligned_cols=67 Identities=40% Similarity=0.916 Sum_probs=63.0
Q ss_pred CCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCc
Q 026104 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKV 227 (243)
Q Consensus 158 ~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v 227 (243)
-+.|||||.|. +..|+|||+|.+.+ ..|+|+|||||.|+||||||++|+|||.|...||+|+||..=
T Consensus 3 ~lSv~D~Vll~--~~~g~VrfiG~t~f-~~GiW~GlELd~p~GkNDGSvnGvRYF~Ckk~~giFir~~~~ 69 (669)
T COG5244 3 LLSVNDRVLLG--DKFGTVRFIGKTKF-KDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRPDDD 69 (669)
T ss_pred eeecCCEEEec--cccceEEEeeeccc-ccceEEEEEecCCCCCCCCccCceEEEEecCCcceEEecCch
Confidence 47899999996 78999999999999 999999999999999999999999999999999999998653
No 7
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4.2e-16 Score=146.42 Aligned_cols=70 Identities=37% Similarity=0.873 Sum_probs=65.2
Q ss_pred CCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCC-CccCcEECCEEeeec-CCCceeeecCCCcccC
Q 026104 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPL-GKHNGIVKGVRYFEC-PPLHGAMVRPDKVKVG 230 (243)
Q Consensus 158 ~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~-GkndGs~~G~rYF~c-~~~~G~Fv~~~~v~~g 230 (243)
.+.+|+|++|. ...+||||+|.|++ -++-|+|||||+|. |||||+++|+|||.| .|+-|+|++|.+|..+
T Consensus 2 ~~~IG~RvkI~--~~~~Tvr~iG~V~g-~~~~w~GvEWDd~~RGKH~G~vdgk~YF~~q~P~GGSFik~~kV~~p 73 (505)
T KOG3207|consen 2 TMEIGTRVKIG--GEIATVRYIGEVEG-NNSKWYGVEWDDPVRGKHDGIVDGKRYFQTQHPNGGSFIKPGKVKFP 73 (505)
T ss_pred ceeccceEEEc--CEEEEEEEEEEEcC-CCCcceeeEecCCCccccCceecceeeeeeecCCCccccCCccCCCC
Confidence 36799999996 79999999999999 56699999999997 999999999999999 8999999999999876
No 8
>KOG4568 consensus Cytoskeleton-associated protein and related proteins [Cytoskeleton; General function prediction only]
Probab=99.58 E-value=8e-16 Score=152.19 Aligned_cols=74 Identities=35% Similarity=0.731 Sum_probs=68.4
Q ss_pred hhcCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCccc
Q 026104 154 DLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKV 229 (243)
Q Consensus 154 ~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~ 229 (243)
.....+.||.+|.|. +..+|.|||+|++++ ..|+|+||+|++|.|||||+|.|+|||.|.+++|+|+++-+.+.
T Consensus 13 ~~~~~~~ig~~v~v~-~~~~G~v~y~G~t~f-~~G~w~GveL~~p~GKNdGsv~G~rYF~ce~~kgif~~~~~~t~ 86 (664)
T KOG4568|consen 13 DDLGQFIIGRRVWVN-NVELGFVRYAGETDF-AKGIWAGVELLEPKGKNDGSVHGKRYFQCEPKKGIFFRQGRGTA 86 (664)
T ss_pred hhhhhhhhcceEEec-CCcceeeeeccCccc-ccceeeceeeccccCCCCcccchhhhhccccccceeeccccccc
Confidence 445678999999997 689999999999999 99999999999999999999999999999999999998877654
No 9
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.40 E-value=8.5e-13 Score=95.71 Aligned_cols=72 Identities=18% Similarity=0.284 Sum_probs=62.0
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++|.|+. +.++..+++++++.||++||++|+..+|+||+.|+|.+ +|+. | +|+.+|++|++++|++||++=
T Consensus 1 m~i~v~~--~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~---~g~~---L-~d~~tl~~~~i~~g~~i~l~~ 71 (76)
T cd01806 1 MLIKVKT--LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQ---M-NDDKTAADYKLEGGSVLHLVL 71 (76)
T ss_pred CEEEEEe--CCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEE---CCeE---c-cCCCCHHHcCCCCCCEEEEEE
Confidence 3577763 44567889999999999999999999999999999997 5776 3 677899999999999999985
Q ss_pred c
Q 026104 94 L 94 (243)
Q Consensus 94 ~ 94 (243)
.
T Consensus 72 ~ 72 (76)
T cd01806 72 A 72 (76)
T ss_pred E
Confidence 3
No 10
>PTZ00044 ubiquitin; Provisional
Probab=99.40 E-value=8.7e-13 Score=96.21 Aligned_cols=71 Identities=20% Similarity=0.301 Sum_probs=61.8
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++|+|+ .+.+....+++++++||++||++|+..+|+||++|+|++ +|+. | +|+.+|++|++++|++||++=
T Consensus 1 m~i~vk--~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~---~g~~---L-~d~~~l~~~~i~~~~~i~l~~ 71 (76)
T PTZ00044 1 MQILIK--TLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIY---SGKQ---M-SDDLKLSDYKVVPGSTIHMVL 71 (76)
T ss_pred CEEEEE--eCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEE---CCEE---c-cCCCcHHHcCCCCCCEEEEEE
Confidence 357787 345567889999999999999999999999999999997 6776 3 588899999999999999974
No 11
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.40 E-value=9.4e-13 Score=94.52 Aligned_cols=71 Identities=18% Similarity=0.309 Sum_probs=61.9
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
|+|+|+. +.+....+++++++||++||++|+..+|+||+.|+|.+ +|+. .+|+.+|++|++++|++||++-
T Consensus 1 i~i~vk~--~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~---~g~~----L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKT--LDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIY---SGRV----LKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCEE----CCCcCcHHHCCCCCCCEEEEEe
Confidence 5788874 44557889999999999999999999999999999998 5764 4678999999999999999974
No 12
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.39 E-value=1.3e-12 Score=95.66 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=62.1
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
+|.|+|+ ++.++...++++++.||++||++|+...|+||+.|||++ .|+. .+|+++|++||+++|++||+-
T Consensus 1 ~~~i~vk--t~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~---~Gk~----L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 1 MIEVVCN--DRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKK---WYTI----FKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred CEEEEEE--CCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEe---CCcC----CCCCCCHHHcCCCCCCEEEEE
Confidence 4778887 455678888999999999999999999999999999998 4764 477889999999999999984
No 13
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.37 E-value=1.6e-12 Score=93.31 Aligned_cols=69 Identities=19% Similarity=0.270 Sum_probs=60.7
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
|+|.|+++ ++..++++++++||.+||++|+..+|+||+.|+|.+ .|+. | +|+++|++|++++|++|||+
T Consensus 1 i~i~vk~~---g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~---~g~~---l-~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG---GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIF---KGKE---R-DDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC---CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEee---CCcc---c-CccCcHHHcCCCCCCEEEEe
Confidence 57888865 457889999999999999999999999999999998 4665 3 57789999999999999986
No 14
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.33 E-value=3.8e-12 Score=92.86 Aligned_cols=68 Identities=19% Similarity=0.137 Sum_probs=59.8
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
++|+|+. . ....+.++++.||++||++|+..+|||+++|+|++ .|+. .+|+.+|++|+++++++||++
T Consensus 1 mqi~vk~--~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~---~Gk~----L~D~~tL~~~~i~~~~tl~l~ 68 (74)
T cd01793 1 MQLFVRA--Q--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLL---AGVP----LEDDATLGQCGVEELCTLEVA 68 (74)
T ss_pred CEEEEEC--C--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEE---CCeE----CCCCCCHHHcCCCCCCEEEEE
Confidence 4678874 2 35678889999999999999999999999999999 6876 368899999999999999997
No 15
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.32 E-value=4.2e-12 Score=93.50 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=53.0
Q ss_pred ceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCC-CCcEEEEe
Q 026104 26 FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPL-QGYRLHVI 92 (243)
Q Consensus 26 ~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~-dg~~IhVv 92 (243)
....+.+++++||++||+||+.++||||++||| + .|+. |.+|+++|++|+++ +|.++|+-
T Consensus 13 ~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~---~G~~---L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 13 VTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-V---IGQR---LARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred CeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-E---cCCe---eCCCcCCHHHcCCCCCCCEEEEE
Confidence 356788999999999999999999999999999 6 4666 45788999999999 88999873
No 16
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.31 E-value=3.7e-12 Score=93.56 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=57.4
Q ss_pred CCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEeec
Q 026104 23 LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (243)
Q Consensus 23 ~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD~ 94 (243)
+.+...++.+++++||++||++|+..+||||++|+|++ .|+. .+|+++|++|++++|++|||+=.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~---~G~~----L~d~~tL~~~~i~~g~~l~v~~~ 69 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQY---EGIF----IKDSNSLAYYNLANGTIIHLQLK 69 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE---CCEE----cCCCCcHHHcCCCCCCEEEEEEe
Confidence 45567888999999999999999999999999999998 4654 46789999999999999999753
No 17
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.31 E-value=6.5e-12 Score=91.57 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=61.5
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++|+|+. +.+....+.++++.||++||++|+..+|+|+++|+|++ .|+. | +|+.+|++|+++++++||++=
T Consensus 1 m~i~vk~--~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~---~G~~---L-~d~~~L~~~~i~~~~~l~l~~ 71 (74)
T cd01807 1 MFLTVKL--LQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLF---KGKA---L-ADDKRLSDYSIGPNAKLNLVV 71 (74)
T ss_pred CEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEE---CCEE---C-CCCCCHHHCCCCCCCEEEEEE
Confidence 3677773 44567778899999999999999999999999999998 6877 3 678999999999999999984
No 18
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.31 E-value=6.3e-12 Score=91.11 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=60.7
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++|+|. .+.++...+.+++++||++||++|+..+|+||+.|+|.+ +|+. .+|+.+|++|++++|++||++=
T Consensus 1 m~i~v~--~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~---~g~~----L~d~~~L~~~~i~~~~~i~l~~ 71 (76)
T cd01803 1 MQIFVK--TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLVL 71 (76)
T ss_pred CEEEEE--cCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEE---CCEE----CCCCCcHHHcCCCCCCEEEEEE
Confidence 357776 344566778999999999999999999999999999997 5765 3678899999999999999974
No 19
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.27 E-value=1.3e-11 Score=91.43 Aligned_cols=71 Identities=11% Similarity=0.130 Sum_probs=60.3
Q ss_pred EEEEEEeCCCCCce-eEEE-cCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104 14 VLLRVTHSNLKSFS-ADVR-FPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (243)
Q Consensus 14 v~v~It~s~~~~~~-~e~r-~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV 91 (243)
++|+|+ ++.++. ..+. +++++||++||++|+..+|+|+++|||++ .|+. .+|+.+|++||+++|++||+
T Consensus 1 M~I~vk--~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~---~Gk~----L~D~~tL~~y~i~~~~~i~l 71 (78)
T cd01797 1 MWIQVR--TMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFY---RGKQ----MEDGHTLFDYNVGLNDIIQL 71 (78)
T ss_pred CEEEEE--cCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEe---CCEE----CCCCCCHHHcCCCCCCEEEE
Confidence 367787 345554 4674 78999999999999999999999999998 6876 37899999999999999999
Q ss_pred ee
Q 026104 92 ID 93 (243)
Q Consensus 92 vD 93 (243)
.=
T Consensus 72 ~~ 73 (78)
T cd01797 72 LV 73 (78)
T ss_pred EE
Confidence 64
No 20
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.27 E-value=1e-11 Score=92.30 Aligned_cols=72 Identities=18% Similarity=0.063 Sum_probs=62.5
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhC--CCCCceEEEEEcCCCCeeeecCCCCCccCCCC--CCCCcEE
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCG--TSVNSMSLELYDDTNTKVAALTDNSRPLGFYS--PLQGYRL 89 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tG--ipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~--i~dg~~I 89 (243)
|+|+|++++...+..++.+++++||.+||++|+...+ .+|++|||++ .|+. ++|+.+|++|. +.+|.+|
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy---~GKi----LkD~~tL~~~~~~~~~~~ti 74 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIY---SGKL----LPDHLKLRDVLRKQDEYHMV 74 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEE---cCee----ccchhhHHHHhhcccCCceE
Confidence 7899998776655677888999999999999999885 4579999999 6986 37889999996 9999999
Q ss_pred EEe
Q 026104 90 HVI 92 (243)
Q Consensus 90 hVv 92 (243)
|+|
T Consensus 75 HLV 77 (79)
T cd01790 75 HLV 77 (79)
T ss_pred EEE
Confidence 997
No 21
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.26 E-value=2.2e-11 Score=94.83 Aligned_cols=74 Identities=23% Similarity=0.231 Sum_probs=64.9
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
...++|+|+ .+.+....+.++++.||++||++|+..+|+|+++|+|++ +|+. .+|+.+|++|++++|++||
T Consensus 25 ~~~M~I~Vk--~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~---~Gk~----L~D~~tL~dy~I~~~stL~ 95 (103)
T cd01802 25 YDTMELFIE--TLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIW---NNME----LEDEYCLNDYNISEGCTLK 95 (103)
T ss_pred CCCEEEEEE--cCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEE---CCEE----CCCCCcHHHcCCCCCCEEE
Confidence 346899998 455667788999999999999999999999999999998 6876 3788999999999999999
Q ss_pred Eee
Q 026104 91 VID 93 (243)
Q Consensus 91 VvD 93 (243)
++=
T Consensus 96 l~~ 98 (103)
T cd01802 96 LVL 98 (103)
T ss_pred EEE
Confidence 974
No 22
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.25 E-value=1.5e-11 Score=89.20 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=56.8
Q ss_pred CCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 23 LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 23 ~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
+.++...+.++++.||.+||++|+..+|+|+++|+|++ .|+. .+|+.+|++|++++|++|||+
T Consensus 6 ~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~---~G~~----L~D~~~l~~~~i~~~~tv~~~ 68 (70)
T cd01794 6 STGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFF---SGKL----LTDKTRLQETKIQKDYVVQVI 68 (70)
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEE---CCeE----CCCCCCHHHcCCCCCCEEEEE
Confidence 44567788899999999999999999999999999998 6876 478899999999999999996
No 23
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.25 E-value=1.8e-11 Score=88.14 Aligned_cols=68 Identities=13% Similarity=0.185 Sum_probs=59.1
Q ss_pred EEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 16 LRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 16 v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
|+|+ .+.+....+.++++.||++||++|+..+|+|+++|+|++ .|+. | +|+.+|++|++++|++|||+
T Consensus 1 i~vk--~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~---~G~~---L-~d~~~l~~~~i~~~stl~l~ 68 (70)
T cd01798 1 VYVR--TNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIF---AGKE---L-RNTTTIQECDLGQQSILHAV 68 (70)
T ss_pred CEEE--cCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEE---CCeE---C-CCCCcHHHcCCCCCCEEEEE
Confidence 3555 345567778899999999999999999999999999998 6877 3 77899999999999999997
No 24
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.24 E-value=1.7e-11 Score=88.98 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=55.4
Q ss_pred CCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 24 KSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 24 ~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
.+....+.+++++||++||++|+..+|+|+++|+|++ .|+. |.++..+|++|++++|+.||+-
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~---~Gk~---L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLIY---NGRE---LVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEE---CCeE---ccCCcccHHHcCCCCCCEEEEe
Confidence 3456788999999999999999999999999999998 6887 4455689999999999999973
No 25
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.23 E-value=2.6e-11 Score=87.63 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=59.1
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
|+|+|++. .+. .++.+++++||++||++|+..+|+|+++|+|.+ +|+. | +|+.+|.+||+++|++||++
T Consensus 1 ~~i~vk~~--~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~---~Gk~---L-~d~~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 1 IKVTVKTP--KDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIF---AGKI---L-KDTDTLTQHNIKDGLTVHLV 69 (71)
T ss_pred CEEEEEcC--CCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEE---CCeE---c-CCCCcHHHcCCCCCCEEEEE
Confidence 46778743 444 478889999999999999999999999999988 6776 3 67789999999999999986
No 26
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=8e-12 Score=87.36 Aligned_cols=64 Identities=19% Similarity=0.314 Sum_probs=59.6
Q ss_pred CCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 22 NLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 22 ~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
.++.+..|+.++|..+|+.+|+++++..||||.+|||++ .|++ .+|+.+-..|++.-|+.+|++
T Consensus 7 tLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~---~gkq----m~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 7 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---AGKQ----MNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred eeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhh---cccc----ccccccHHHhhhccceeEeeC
Confidence 577788999999999999999999999999999999999 6887 478999999999999999985
No 27
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.22 E-value=3.7e-11 Score=88.78 Aligned_cols=71 Identities=17% Similarity=0.235 Sum_probs=60.5
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++|+|+. +.++..++.++++.||++||++|+..+|+|++.|||++ .|+. | +|+ +|++||+++|++|||+=
T Consensus 2 m~I~Vk~--~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~---~Gk~---L-~d~-~L~~~gi~~~~~i~l~~ 71 (78)
T cd01804 2 MNLNIHS--TTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLH---RETR---L-SSG-KLQDLGLGDGSKLTLVP 71 (78)
T ss_pred eEEEEEE--CCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEE---CCcC---C-CCC-cHHHcCCCCCCEEEEEe
Confidence 5788873 44567788999999999999999999999999999998 5775 3 455 89999999999999985
Q ss_pred c
Q 026104 94 L 94 (243)
Q Consensus 94 ~ 94 (243)
+
T Consensus 72 ~ 72 (78)
T cd01804 72 T 72 (78)
T ss_pred e
Confidence 3
No 28
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.21 E-value=4.6e-11 Score=87.62 Aligned_cols=72 Identities=10% Similarity=0.004 Sum_probs=60.7
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
|+|.|+++. ...+++++++.||++||++|+..||+||++|+|.+..-.|+. ..|+.+|++|++++|..|+|+
T Consensus 1 ~~i~vk~~g---~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~----l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKWGG---QEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKP----AEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEECC---EEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCc----CCCCcCHHHcCCCCCCEEEEE
Confidence 467888654 367889999999999999999999999999999972113654 468899999999999999986
No 29
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.20 E-value=4.4e-11 Score=87.23 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=59.3
Q ss_pred EEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 16 LRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 16 v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
|+|+ ++.+....+.++++.||.+||++|+..+|+|+++|+|++ .|+. | .|+++|++|+++++++||++=
T Consensus 1 i~vk--~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~---~G~~---L-~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVR--NDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSF---EGRP---M-EDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEE--CCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEE---CCEE---C-CCCCCHHHcCCCCCCEEEEEE
Confidence 4566 345567778889999999999999999999999999998 6877 3 577999999999999999863
No 30
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.20 E-value=4.7e-11 Score=88.47 Aligned_cols=73 Identities=19% Similarity=0.141 Sum_probs=61.5
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++|+|+. +.++...+.++++.||.+||++|+..+|+|++.|||.+.. .|+. .+|+.+|++||+++|++|||+=
T Consensus 3 ~~i~Vk~--~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~-~G~~----L~D~~tL~~~gi~~gs~l~l~~ 75 (80)
T cd01792 3 WDLKVKM--LGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLD-SREV----LQDGVPLVSQGLGPGSTVLLVV 75 (80)
T ss_pred eEEEEEe--CCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEecc-CCCC----CCCCCCHHHcCCCCCCEEEEEE
Confidence 7888873 4556778899999999999999999999999999995321 5665 3677899999999999999974
No 31
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.18 E-value=6.4e-11 Score=84.55 Aligned_cols=63 Identities=19% Similarity=0.304 Sum_probs=57.6
Q ss_pred CCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 23 LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 23 ~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
+++...++.++++.||.+||++|+..+|+|++.|+|.+ .|+. | +|+.+|++|++.+|++|||+
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~---~G~~---L-~d~~tL~~~~i~~~~~I~l~ 65 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIY---NGKE---L-DDDKTLSDYGIKDGSTIHLV 65 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEE---TTEE---E-STTSBTGGGTTSTTEEEEEE
T ss_pred CCCcEEEEEECCCCCHHHhhhhcccccccccccceeee---eeec---c-cCcCcHHHcCCCCCCEEEEE
Confidence 34567889999999999999999999999999999999 6876 3 89999999999999999986
No 32
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.17 E-value=1.1e-10 Score=85.25 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=62.4
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCC--CCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGT--SVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGi--pp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV 91 (243)
++|+|+. +.+....+.++++.||.+||++|+..+|+ |++.|+|.+ +|+. | +|+.+|++|++++|++|++
T Consensus 1 m~i~vk~--~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~---~G~~---L-~d~~~L~~~~i~~~~~i~~ 71 (77)
T cd01805 1 MKITFKT--LKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIY---SGKI---L-KDDTTLEEYKIDEKDFVVV 71 (77)
T ss_pred CEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEE---CCEE---c-cCCCCHHHcCCCCCCEEEE
Confidence 4677774 44556778899999999999999999999 999999998 5776 3 6779999999999999998
Q ss_pred eecCC
Q 026104 92 IDLDP 96 (243)
Q Consensus 92 vD~~p 96 (243)
+=..|
T Consensus 72 ~~~~~ 76 (77)
T cd01805 72 MVSKP 76 (77)
T ss_pred EEecC
Confidence 75543
No 33
>KOG4568 consensus Cytoskeleton-associated protein and related proteins [Cytoskeleton; General function prediction only]
Probab=99.13 E-value=1.1e-11 Score=123.06 Aligned_cols=77 Identities=39% Similarity=0.719 Sum_probs=72.3
Q ss_pred cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCCCCC
Q 026104 156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPE 234 (243)
Q Consensus 156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f~~ 234 (243)
...+.+|+|+.+. +...|++||.|.+.+ ..|-|+|||||+|+|+|||++.+++||+|++.||.|.+..+|.-+.++.
T Consensus 152 ~~~l~v~dr~l~~-gq~~~~~r~~~~t~f-a~g~w~~~elde~~~~~d~sv~k~~~~~~k~ky~~f~~v~kv~~~~~~~ 228 (664)
T KOG4568|consen 152 MLGLRVGDRVLVG-GQKSGTLRYSGHTKF-ASGSWLGVELDEPVGKNDGSVGKVRYFQCKPKYGKFAPVQKVFKIEVTI 228 (664)
T ss_pred ccccccccceeec-Ccccchhhhhccccc-cCCcccchhcccccccccccccccccccCcchhcchhHHHHHhhccccc
Confidence 4679999999997 789999999999999 9999999999999999999999999999999999999999998887764
No 34
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=99.08 E-value=1.9e-10 Score=109.88 Aligned_cols=80 Identities=24% Similarity=0.507 Sum_probs=71.4
Q ss_pred cCCCCCCCEEEEc-CC---CceeEEEEecccCCCCCccEEEEEEeCC-----CCccCcEECCEEeeecCCCceeeecCCC
Q 026104 156 CSNITVGDRCEVD-PG---AKRGVVKYVGQAESIAPGFWVGIQYDEP-----LGKHNGIVKGVRYFECPPLHGAMVRPDK 226 (243)
Q Consensus 156 ~~~~~vG~rv~v~-~~---~~~G~vryvG~~~~~~~g~w~GVelDep-----~GkndGs~~G~rYF~c~~~~G~Fv~~~~ 226 (243)
...++||+-|+|. ++ ..+|+|||||..|. ..|+|+|||+++. .+..||++.|.|||+|..+...||+...
T Consensus 233 ~~~L~IGslveV~np~~~~~~ygvVrWIG~pP~-~~~Vl~gve~edet~~~~~~~~dgs~~g~Rlftc~d~~a~Fv~~~s 311 (724)
T KOG3556|consen 233 ILNLKIGSLVEVENPETMRRVYGVVRWIGEPPE-ASGVLYGVEFEDETSQWPSSNQDGSSSGDRLFTCFDTNANFVMSGS 311 (724)
T ss_pred cccceecceEEecCCccccccceeeEecccCCc-ccCceEeeeecCccccCccccccCcccCceeeeeccccceeeEcCC
Confidence 3469999999996 32 57999999999998 8999999999975 4789999999999999999999999999
Q ss_pred cccC-CCCCCC
Q 026104 227 VKVG-DYPERD 236 (243)
Q Consensus 227 v~~g-~f~~~d 236 (243)
+++. .|..++
T Consensus 312 cs~d~rfa~l~ 322 (724)
T KOG3556|consen 312 CSVDPRFARLY 322 (724)
T ss_pred CCcCcccchhc
Confidence 9998 588766
No 35
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.07 E-value=1.3e-10 Score=89.44 Aligned_cols=82 Identities=13% Similarity=0.202 Sum_probs=65.8
Q ss_pred EEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEeecCCCcccCCCccccC
Q 026104 29 DVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDT 108 (243)
Q Consensus 29 e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD~~p~s~~~~~~l~d~ 108 (243)
.+.++++.||++||.+|.+++|++|.+|+|++ +|+. |.||.++|++||+.++++|++.-++|..--. ..+|+
T Consensus 18 ~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~---dG~~---L~DDsrTLssyGv~sgSvl~LlideP~~d~~--~~~~~ 89 (107)
T cd01795 18 ALLVSANQTLKELKIQIMHAFSVAPFDQNLSI---DGKI---LSDDCATLGTLGVIPESVILLKADEPIADYA--AMDDV 89 (107)
T ss_pred eEEeCccccHHHHHHHHHHHhcCCcccceeee---cCce---eccCCccHHhcCCCCCCEEEEEecCCcccHH--HHHHH
Confidence 34578999999999999999999999999999 5773 7899999999999999999998878743211 14554
Q ss_pred CcceeeecCHHHH
Q 026104 109 SLVEKYTISEEEY 121 (243)
Q Consensus 109 s~veky~msee~Y 121 (243)
-+| -|+||-|
T Consensus 90 ~~~---~~~~~~~ 99 (107)
T cd01795 90 MQV---CMPEEGF 99 (107)
T ss_pred HHh---cCccccc
Confidence 444 5666654
No 36
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=98.99 E-value=4.9e-10 Score=82.47 Aligned_cols=54 Identities=19% Similarity=0.305 Sum_probs=47.6
Q ss_pred CCCCCHHHHHHHHHhHh--CCC-CCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 33 PLQMSVESVKDKLWRKC--GTS-VNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 33 ~~~~TV~~LK~KLe~~t--Gip-p~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
+-+.||.+||+||+..+ |++ +++|||++ .|+. ++|+++|++|+|++|++||++-
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy---~GKi----L~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIH---CGRK----LKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEEe---CCcC----CCCCCcHHHcCCCCCCEEEEEe
Confidence 45899999999999996 575 99999999 6886 3788999999999999999973
No 37
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=98.99 E-value=1.1e-09 Score=76.07 Aligned_cols=64 Identities=20% Similarity=0.246 Sum_probs=54.5
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY 87 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~ 87 (243)
++|+|++.. ...+++++++.||++||++|+..+|+|++.|+|.+ .|+. | .|+++|++|++++|+
T Consensus 1 ~~i~vk~~~---~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~---~g~~---L-~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD---GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIY---KGKV---L-EDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC---ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE---CCEE---C-CCCCCHHHcCCcCCC
Confidence 467887655 36788999999999999999999999999999998 5665 3 567999999999874
No 38
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=98.96 E-value=3.6e-10 Score=113.87 Aligned_cols=69 Identities=29% Similarity=0.433 Sum_probs=60.7
Q ss_pred cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccC
Q 026104 156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG 230 (243)
Q Consensus 156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g 230 (243)
..-+-.|.||.+. ....++|||+|+..|. + |||||.|.|||||++.|++||.|.|+||+||+++++..-
T Consensus 1628 pew~~~ge~v~~~-~h~t~v~r~vg~tefq-~----gveld~p~gkndgs~gg~qyfrc~p~~g~~vr~s~~~~~ 1696 (1714)
T KOG0241|consen 1628 PEWRGFGERVVTV-EHTTNVLRDVGFTEFQ-G----GVELDDPDGKNDGSAGGLQYFRCLPNKGGGVRVSDGLHH 1696 (1714)
T ss_pred chhhhcCceeEEe-ecccceeeecchhhcc-C----cccccCCCCCcCccccceeEEeecCCCCCcccchhhccC
Confidence 3457789999986 3678899999999993 3 999999999999999999999999999999999987643
No 39
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.92 E-value=3.8e-09 Score=74.33 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=55.3
Q ss_pred CceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 25 SFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 25 ~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++...+++++++||++||++|+..+|+|++.|+|.+ .|+. | +|+.+|++|++.+++.|+|.+
T Consensus 7 ~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~---~g~~---l-~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 7 GKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIY---AGKI---L-KDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE---CCcC---C-CCcCCHHHCCCCCCCEEEEEE
Confidence 456788999999999999999999999999999977 5665 3 678899999999999999986
No 40
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=98.90 E-value=9.1e-09 Score=77.52 Aligned_cols=75 Identities=13% Similarity=0.191 Sum_probs=65.8
Q ss_pred cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (243)
Q Consensus 9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~ 88 (243)
..+..|.|+|.+ ..+..+.+++.++.|+..||++++...|+|+++|+|+| +|+.+ +++.|+.+|++++|.+
T Consensus 7 ~~~~~i~I~v~~--~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f---~G~~L----~~~~T~~~l~m~d~d~ 77 (87)
T cd01763 7 EISEHINLKVKG--QDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLF---DGQRI----RDNQTPDDLGMEDGDE 77 (87)
T ss_pred CCCCeEEEEEEC--CCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEE---CCeEC----CCCCCHHHcCCCCCCE
Confidence 345578999974 45667889999999999999999999999999999999 78873 6788999999999999
Q ss_pred EEEe
Q 026104 89 LHVI 92 (243)
Q Consensus 89 IhVv 92 (243)
|||+
T Consensus 78 I~v~ 81 (87)
T cd01763 78 IEVM 81 (87)
T ss_pred EEEE
Confidence 9997
No 41
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=2.6e-09 Score=88.09 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=61.1
Q ss_pred EEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 15 ~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
.|+|. .++++..-+...++.||..+|+||+..+||||++|||++ .|+++ .|..+|++|+|+.-++||++=
T Consensus 2 ~ifVk--~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlif---ag~qL----edgrtlSDY~Iqkestl~l~l 71 (156)
T KOG0004|consen 2 QIFVK--TLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQL----EDGRTLSDYNIQKESTLHLVL 71 (156)
T ss_pred ccchh--hccccceeeeecccccHHHHHHhhhcccCCCchhhhhhh---hhccc----ccCCccccccccccceEEEEE
Confidence 56776 355556777889999999999999999999999999999 78873 567999999999999999985
No 42
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.71 E-value=2.4e-08 Score=95.37 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=67.4
Q ss_pred ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (243)
Q Consensus 12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV 91 (243)
+.|+|+|++... ..+..++...||.+||++|..++++++++++|+| .|+. ++|+.+|..|+|+||.+||+
T Consensus 14 ~~irV~Vkt~~d---k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIf---aGrI----LKD~dTL~~~gI~Dg~TvHL 83 (493)
T KOG0010|consen 14 SLIRVTVKTPKD---KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIY---AGRI----LKDDDTLKQYGIQDGHTVHL 83 (493)
T ss_pred ceeEEEEecCCc---ceeEecccchHHHHHHHHHHHhcCCChhHeeeee---cCcc----ccChhhHHHcCCCCCcEEEE
Confidence 469999997654 5678889999999999999999999999999999 6986 37999999999999999999
Q ss_pred eecCC
Q 026104 92 IDLDP 96 (243)
Q Consensus 92 vD~~p 96 (243)
|-..+
T Consensus 84 Vik~~ 88 (493)
T KOG0010|consen 84 VIKSQ 88 (493)
T ss_pred EeccC
Confidence 98765
No 43
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=2.7e-09 Score=83.01 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=58.1
Q ss_pred CCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 23 LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 23 ~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
+.++.+.+.+.|+.||..||+++...+||||++|+|++ +|++ .+|..+|+.||++.-++||++=
T Consensus 8 ~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~---~~k~----LED~~Tla~Y~i~~~~Tl~~~~ 71 (128)
T KOG0003|consen 8 LTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLADYNIQKESTLHLVL 71 (128)
T ss_pred eeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHh---cccc----cccCCcccccCccchhhhhhhH
Confidence 56667778889999999999999999999999999999 6876 3899999999999999999874
No 44
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.69 E-value=4.2e-08 Score=92.39 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=63.9
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhC---CCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCG---TSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tG---ipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
|+|+|+ ++.+...++.+++++||.+||++|+..+| +|++.|||++ .|+. ++|+++|.+|+|+++..|+
T Consensus 1 MkItVK--tl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy---~Gki----L~Dd~tL~dy~I~e~~~Iv 71 (378)
T TIGR00601 1 MTLTFK--TLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIY---SGKI----LSDDKTVREYKIKEKDFVV 71 (378)
T ss_pred CEEEEE--eCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEE---CCEE----CCCCCcHHHcCCCCCCEEE
Confidence 468887 46667788999999999999999999999 9999999998 6876 3688899999999999888
Q ss_pred EeecCC
Q 026104 91 VIDLDP 96 (243)
Q Consensus 91 VvD~~p 96 (243)
|.=..+
T Consensus 72 vmv~k~ 77 (378)
T TIGR00601 72 VMVSKP 77 (378)
T ss_pred EEeccC
Confidence 876543
No 45
>PLN02560 enoyl-CoA reductase
Probab=98.66 E-value=8.9e-08 Score=87.94 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=64.1
Q ss_pred EEEEEeCCCCCcee---EEEcCCCCCHHHHHHHHHhHhCC-CCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 15 LLRVTHSNLKSFSA---DVRFPLQMSVESVKDKLWRKCGT-SVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 15 ~v~It~s~~~~~~~---e~r~~~~~TV~~LK~KLe~~tGi-pp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
+|.|+.. +++.. ++.++++.||++||++|+...|+ +++.|||.+.+.+|+......+|+++|.+||+++|++|+
T Consensus 2 ~I~Vk~~--~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy 79 (308)
T PLN02560 2 KVTVVSR--SGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVV 79 (308)
T ss_pred EEEEEcC--CCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEE
Confidence 4666632 23343 68889999999999999999997 899999999755554322234678899999999999999
Q ss_pred EeecCCC
Q 026104 91 VIDLDPS 97 (243)
Q Consensus 91 VvD~~p~ 97 (243)
|-|..|.
T Consensus 80 ~kDLGpQ 86 (308)
T PLN02560 80 FKDLGPQ 86 (308)
T ss_pred EEeCCCc
Confidence 9999884
No 46
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.60 E-value=3e-08 Score=78.10 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=59.8
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHH-----hHhCCC--CCceEEEEEcCCCCeeeecCCCCCccCCCC---
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLW-----RKCGTS--VNSMSLELYDDTNTKVAALTDNSRPLGFYS--- 82 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe-----~~tGip--p~~qrL~l~~~~g~~~~~l~~d~~~L~~y~--- 82 (243)
.|.|....++-+. .--.+|+++.||++||+||+ .++|+| +++|+|++ .|+. ++|+++|++|+
T Consensus 4 ~~e~kfrl~dg~d-igp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIy---sGKi----LeD~~TL~d~~~p~ 75 (113)
T cd01814 4 QIEIKFRLYDGSD-IGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLIS---AGKI----LENSKTVGECRSPV 75 (113)
T ss_pred cEEEEEEccCCCc-cCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEe---CCee----cCCCCcHHHhCCcc
Confidence 3555555444321 34578999999999999999 677888 99999999 7987 37899999999
Q ss_pred ---CCCCcEEEEeecCC
Q 026104 83 ---PLQGYRLHVIDLDP 96 (243)
Q Consensus 83 ---i~dg~~IhVvD~~p 96 (243)
+....++||+=-.|
T Consensus 76 g~~~~~~~TmHvvlr~~ 92 (113)
T cd01814 76 GDIAGGVITMHVVVQPP 92 (113)
T ss_pred cccCCCceEEEEEecCC
Confidence 88889999986433
No 47
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.45 E-value=6.7e-07 Score=64.27 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=60.1
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCC-CceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSV-NSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp-~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
|+|.|++.+ +.....++.++.|++.|++++....|+|+ +.++|.| +|+.+ +.+.|+.+|++++|..|+|+
T Consensus 1 I~i~v~~~~--~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~f---dG~~L----~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQD--GKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIF---DGKRL----DPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETT--SEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEE---TTEEE-----TTSCHHHHT-STTEEEEEE
T ss_pred CEEEEEeCC--CCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEE---CCEEc----CCCCCHHHCCCCCCCEEEEE
Confidence 678887654 34788899999999999999999999999 9999999 78873 67789999999999999985
No 48
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.17 E-value=1e-05 Score=59.22 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=60.9
Q ss_pred eeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEeecCCC
Q 026104 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPS 97 (243)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD~~p~ 97 (243)
...++++|.-+|-.||+||..--|++- .|||.|..+.|+.. +..+..+|++|||=....|.|.+|.|.
T Consensus 12 dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rq--lL~s~~sLA~yGiFs~~~i~lleT~p~ 79 (80)
T cd01811 12 DWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQ--LLSSRKSLADYGIFSKTNICLLETFPP 79 (80)
T ss_pred ceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccc--cccccccHhhhcceeccEEEEEecCCC
Confidence 467899999999999999999999987 99999999887653 568999999999999999999999874
No 49
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.16 E-value=3e-06 Score=77.66 Aligned_cols=72 Identities=18% Similarity=0.157 Sum_probs=63.8
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhC--CCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCG--TSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tG--ipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV 91 (243)
++|+|+ +|++..+++++.|+.||.++|.||+...| .|++.|+|++ +|+. +.|+.+++.|++.+..-|.|
T Consensus 1 m~lt~K--tL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy---~Gki----L~D~~tv~Eykv~E~~fiVv 71 (340)
T KOG0011|consen 1 MKLTVK--TLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIY---SGKI----LKDETTVGEYKVKEKKFIVV 71 (340)
T ss_pred CeeEee--eccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeee---ccee----ccCCcchhhhccccCceEEE
Confidence 467887 78888999999999999999999999999 9999999999 7886 48999999999999977666
Q ss_pred eec
Q 026104 92 IDL 94 (243)
Q Consensus 92 vD~ 94 (243)
.=+
T Consensus 72 Mls 74 (340)
T KOG0011|consen 72 MLS 74 (340)
T ss_pred EEe
Confidence 443
No 50
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.16 E-value=5.4e-06 Score=60.87 Aligned_cols=57 Identities=23% Similarity=0.198 Sum_probs=48.0
Q ss_pred CCCCCHHHHHHHHHhHhCC-CCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEeec
Q 026104 33 PLQMSVESVKDKLWRKCGT-SVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (243)
Q Consensus 33 ~~~~TV~~LK~KLe~~tGi-pp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD~ 94 (243)
+++.||.+||..|+...+. +++.|||.+. ..|+. | .|+.+|.+||+.+|.+|||-|.
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~-~~g~~---L-~d~~tL~~~gv~~g~~lyvKDL 77 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLE-PKGKS---L-KDDDTLVDLGVGAGATLYVRDL 77 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeC-CCCcc---c-CCcccHhhcCCCCCCEEEEeeC
Confidence 7889999999999999875 7999999864 35655 3 5677899999999999999884
No 51
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=1.3e-05 Score=82.33 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=65.3
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++|.|+ +|..+..+.-+...+||.+||..|...+.|+...|||++ .|++ +.|++++..|+| ||-+|||+|
T Consensus 3 ~~v~vk--tld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~---~grv----l~~~k~vq~~~v-dgk~~hlve 72 (1143)
T KOG4248|consen 3 PNVLVK--TLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIY---QGRV----LQDDKKVQEYNV-DGKVIHLVE 72 (1143)
T ss_pred cceeee--ecccceeEEEechHHHHHHHHHHHHHhcccccccceeee---ccee----eccchhhhhccC-CCeEEEeec
Confidence 457777 577788899999999999999999999999999999999 6887 379999999999 999999999
Q ss_pred cCC
Q 026104 94 LDP 96 (243)
Q Consensus 94 ~~p 96 (243)
--|
T Consensus 73 rpp 75 (1143)
T KOG4248|consen 73 RPP 75 (1143)
T ss_pred cCC
Confidence 654
No 52
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.77 E-value=0.00011 Score=48.13 Aligned_cols=61 Identities=21% Similarity=0.253 Sum_probs=51.2
Q ss_pred ceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 26 FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 26 ~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
....+++++..|+.+||.+|...+|++++.|+|.+ .|.. ..+...+..|++.++.+|++..
T Consensus 8 ~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~---~~~~----~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 8 KTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLV---NGKI----LPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEE---CCeE----CCCCCcHHHcCCCCCCEEEEEe
Confidence 35678889999999999999999999999999988 4544 2455556799999999999875
No 53
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.63 E-value=7.1e-05 Score=55.75 Aligned_cols=75 Identities=17% Similarity=0.206 Sum_probs=40.7
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
.+-|.|.+..- ..-+.++++.|+++||+||...+++|+..|.|.........+ ..++.++|+++|++.|..|.+.
T Consensus 4 ~milRvrS~dG---~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l--~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 4 SMILRVRSKDG---MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEEL--KSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp --EEEEE-SSE---EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCS--SS-TT-CCCCT---TT-EEE--
T ss_pred cEEEEEECCCC---CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCccc--ccCCcCCHHHcCCCCccEEEEe
Confidence 35566665544 233457899999999999999999999999886532211222 1357899999999999988763
No 54
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.59 E-value=0.00038 Score=48.09 Aligned_cols=65 Identities=23% Similarity=0.305 Sum_probs=54.6
Q ss_pred CCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEeec
Q 026104 23 LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (243)
Q Consensus 23 ~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD~ 94 (243)
+.++.......+..+|..+|.+|+...|+++..|+|.+ .|+. ..|+.+|.+|+|..+.++|+.-.
T Consensus 7 ~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~---~~~~----l~d~~~l~~~~i~~~~~~~l~~~ 71 (75)
T KOG0001|consen 7 LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIF---GGKP----LEDGRTLADYNIQEGSTLHLVLS 71 (75)
T ss_pred cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEE---CCEE----CcCCCcHHHhCCCCCCEEEEEEe
Confidence 44456667788999999999999999999999999888 4544 35669999999999999998753
No 55
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.38 E-value=0.00083 Score=53.06 Aligned_cols=72 Identities=15% Similarity=0.254 Sum_probs=49.6
Q ss_pred EEEEEEeCCCCCc-eeEEEcCCCCCHHHHHHHHHhH-------hCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCC
Q 026104 14 VLLRVTHSNLKSF-SADVRFPLQMSVESVKDKLWRK-------CGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQ 85 (243)
Q Consensus 14 v~v~It~s~~~~~-~~e~r~~~~~TV~~LK~KLe~~-------tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~d 85 (243)
|.|.... ..+. ..+.+|++++||.+||++|... .=..++.+||++ .|+. ++|+++|+++.+..
T Consensus 3 i~lkf~l--~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~---~Gri----L~d~~tL~~~~~~~ 73 (111)
T PF13881_consen 3 IELKFRL--ADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIY---AGRI----LEDNKTLSDCRLPS 73 (111)
T ss_dssp EEEEEEE--TTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEE---TTEE----E-SSSBTGGGT--T
T ss_pred EEEEEEE--eCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEe---CCee----cCCcCcHHHhCCCC
Confidence 5554442 2344 6789999999999999999743 234568999999 7986 37999999998776
Q ss_pred Cc------EEEEeec
Q 026104 86 GY------RLHVIDL 94 (243)
Q Consensus 86 g~------~IhVvD~ 94 (243)
|. ++||+=.
T Consensus 74 ~~~~~~~~vmHlvvr 88 (111)
T PF13881_consen 74 GETPGGPTVMHLVVR 88 (111)
T ss_dssp TSETT--EEEEEEE-
T ss_pred CCCCCCCEEEEEEec
Confidence 54 6888864
No 56
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=97.32 E-value=0.00091 Score=52.95 Aligned_cols=49 Identities=14% Similarity=0.003 Sum_probs=42.0
Q ss_pred eEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCC
Q 026104 28 ADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP 83 (243)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i 83 (243)
.=..-.++.||.+||.+|+-++-.||++|||. . ++. +.+|+++|++||+
T Consensus 14 iF~dakes~tVlelK~~iegI~k~pp~dQrL~-k--d~q----vLeD~kTL~d~g~ 62 (119)
T cd01788 14 IFTDAKESTTVYELKRIVEGILKRPPEDQRLY-K--DDQ----LLDDGKTLGDCGF 62 (119)
T ss_pred EEeecCCcccHHHHHHHHHHHhcCChhHheee-c--Cce----eecccccHHHcCc
Confidence 33456799999999999999999999999998 3 443 3599999999999
No 57
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=96.38 E-value=0.0098 Score=44.37 Aligned_cols=48 Identities=10% Similarity=0.160 Sum_probs=41.7
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCC
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNT 66 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~ 66 (243)
+|+|+.+- .+-+|+++.++..+|.+||..+.++|++.++|++++.+..
T Consensus 4 vvKV~f~~------tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~ 51 (80)
T cd06406 4 VVKVHFKY------TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEASG 51 (80)
T ss_pred EEEEEEEE------EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCCC
Confidence 57777762 5779999999999999999999999999999999986543
No 58
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.12 E-value=0.0086 Score=43.98 Aligned_cols=73 Identities=16% Similarity=0.121 Sum_probs=47.7
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCce----EEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSM----SLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~q----rL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~ 88 (243)
.++|.|...+ .+..+..+|.+.+|.+|..-|-...+.+.... ...|....|.. .+++.+|.++++.||..
T Consensus 2 ~~rVtv~~~~--~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~----L~~~~tL~~~gV~dGd~ 75 (79)
T PF08817_consen 2 LCRVTVDAGN--GRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRP----LDPDQTLADAGVRDGDV 75 (79)
T ss_dssp EEEEEEE-TT----EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEE----EETTSBCGGGT--TT-E
T ss_pred EEEEEEEcCC--CcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcc----cCCcCcHhHcCCCCCCE
Confidence 4778886433 35889999999999999999999988755332 25554334543 37899999999999999
Q ss_pred EEE
Q 026104 89 LHV 91 (243)
Q Consensus 89 IhV 91 (243)
+++
T Consensus 76 L~L 78 (79)
T PF08817_consen 76 LVL 78 (79)
T ss_dssp EEE
T ss_pred EEe
Confidence 876
No 59
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.016 Score=55.72 Aligned_cols=73 Identities=10% Similarity=0.112 Sum_probs=57.3
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
..|.|+++. ..+..+ .++.+.|..-||++|+..||++|+.|++.++ |.. ..|+-.++...|++|++||+.=
T Consensus 4 ~~v~VKW~g-k~y~v~-~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vK---Gg~----a~dd~~~~al~iKpn~~lmMmG 74 (473)
T KOG1872|consen 4 DTVIVKWGG-KKYPVE-TLSTDETPSVLKAQLFALTGVPPERQKVMVK---GGL----AKDDVDWGALQIKPNETLMMMG 74 (473)
T ss_pred ceEeeeecC-ccccce-eccCCCchHHHHHHHHHhcCCCccceeEEEe---ccc----ccccccccccccCCCCEEEeec
Confidence 356676542 223322 3789999999999999999999999999885 554 3677788999999999999986
Q ss_pred cC
Q 026104 94 LD 95 (243)
Q Consensus 94 ~~ 95 (243)
+.
T Consensus 75 t~ 76 (473)
T KOG1872|consen 75 TA 76 (473)
T ss_pred cc
Confidence 54
No 60
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.0028 Score=45.35 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=49.8
Q ss_pred CCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104 23 LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (243)
Q Consensus 23 ~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV 91 (243)
--++...++..++.||+++|.-|...||+-|+...|.= ...+.+|.-+|++|-+.+|+.+.+
T Consensus 9 rLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k-------~~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 9 RLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKK-------WYTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred hcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHh-------hhhhhhcccceeeEEeccCccEEE
Confidence 33456677889999999999999999999998776552 122468999999999999997654
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.016 Score=53.72 Aligned_cols=66 Identities=20% Similarity=0.177 Sum_probs=54.9
Q ss_pred eeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeee-ecCCCCCccCCCCCCCCcEEEEe
Q 026104 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA-ALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~-~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
..++-+...-||.+++.+|++..|+.+..|||.+-+.+|+.-. +-.+-+.+|-+|+|++|..+.|.
T Consensus 349 ~~s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 349 IASGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred ccceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 3456678889999999999999999999999999988887531 11255789999999999998774
No 62
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=95.29 E-value=0.012 Score=45.23 Aligned_cols=49 Identities=24% Similarity=0.154 Sum_probs=41.2
Q ss_pred EEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCC
Q 026104 30 VRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP 83 (243)
Q Consensus 30 ~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i 83 (243)
+.-.++-||-+||.||+-++--|++.|||...+.+ + |.+|.++|++-|.
T Consensus 16 ~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~e--q---lL~D~ktL~d~gf 64 (110)
T KOG4495|consen 16 TDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTE--Q---LLDDGKTLGDCGF 64 (110)
T ss_pred eecCccccHHHHHHHHHHHHhCCCcchheeecCHH--H---Hhhccchhhhccc
Confidence 44578999999999999999999999999986433 2 5689999999843
No 63
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=95.23 E-value=0.21 Score=36.41 Aligned_cols=77 Identities=21% Similarity=0.165 Sum_probs=57.7
Q ss_pred CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCc-eEEEEEcCCCCeeeecCCC-CCccCCCCCCCCc
Q 026104 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNS-MSLELYDDTNTKVAALTDN-SRPLGFYSPLQGY 87 (243)
Q Consensus 10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~-qrL~l~~~~g~~~~~l~~d-~~~L~~y~i~dg~ 87 (243)
+...++|.|.-.+ +....++|.++.||.+|.+-|......+... -+|.- .--+.. +..+ +++|.+.++.+..
T Consensus 3 ~~~~~~I~vRlpd--G~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~--~~Pr~~--l~~~~~~tl~e~~l~p~~ 76 (82)
T PF00789_consen 3 ESDVVRIQVRLPD--GSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELIT--AFPRRE--LTDEDSKTLEEAGLLPSA 76 (82)
T ss_dssp TSSEEEEEEEETT--STEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEE--SSSTEE--CCSTTTSBTCCCTTSSCE
T ss_pred CCCEEEEEEECCC--CCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEe--CCCCcC--CCccccccHHHhcCCCCe
Confidence 4567888888554 4578999999999999999999998888764 45543 222332 2233 5999999999999
Q ss_pred EEEEe
Q 026104 88 RLHVI 92 (243)
Q Consensus 88 ~IhVv 92 (243)
.|+|.
T Consensus 77 ~l~v~ 81 (82)
T PF00789_consen 77 TLIVE 81 (82)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99884
No 64
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=94.90 E-value=0.12 Score=37.51 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=42.6
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA 69 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~ 69 (243)
++|.+... +.....++++++|..+|+.+|...++.+....+|.+.|.+|..+.
T Consensus 2 ~~vK~~~~---~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~ 54 (81)
T smart00666 2 VDVKLRYG---GETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVS 54 (81)
T ss_pred ccEEEEEC---CEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEE
Confidence 34555432 235667789999999999999999999989999999998887654
No 65
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=94.63 E-value=0.56 Score=35.62 Aligned_cols=68 Identities=9% Similarity=0.008 Sum_probs=49.5
Q ss_pred ceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEeecC
Q 026104 26 FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 95 (243)
Q Consensus 26 ~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD~~ 95 (243)
....+.|+...||+.++..+...+.| +...||.-+...+.. ..|.+...||.+-++.+|..|.+.--|
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~-e~L~~~~~Tv~da~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSY-ELLNNPEITVEDAGLYDGQVVLIEERN 81 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCE-EEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcch-hhhCCCCccHHHccCcCCCEEEEEeec
Confidence 36778999999999999999999999 888999987655543 346778899999999999987776544
No 66
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=94.04 E-value=0.29 Score=41.22 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=45.8
Q ss_pred EEEEEEeCCCCC----ceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCC
Q 026104 14 VLLRVTHSNLKS----FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP 83 (243)
Q Consensus 14 v~v~It~s~~~~----~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i 83 (243)
|+|+|++ +.+ ....+.++.+.||++|+.+|...+++++..| +.|+...++.+. ..++..+..+..
T Consensus 1 i~Vlvss--~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~-~~L~~~~n~~l~--~~~~~~~s~l~~ 69 (162)
T PF13019_consen 1 INVLVSS--FDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQ-LYLTTNSNGQLS--PSSDIPLSSLLS 69 (162)
T ss_pred CeEEEec--CCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccce-eEEEEeCCCeeC--CCccccHHhhcc
Confidence 5788874 333 3577888999999999999999999999987 555544444432 245555555543
No 67
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=94.01 E-value=0.33 Score=36.23 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=38.1
Q ss_pred eeEEEcCCCCCHHHHHHHHHhHhCCCC-CceEEEEEcCCCCeee
Q 026104 27 SADVRFPLQMSVESVKDKLWRKCGTSV-NSMSLELYDDTNTKVA 69 (243)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGipp-~~qrL~l~~~~g~~~~ 69 (243)
.+-.|+++++++.+|+++|..++++.. +...|.+.|.+|..+.
T Consensus 11 ~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ 54 (82)
T cd06407 11 KIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVL 54 (82)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEE
Confidence 677899999999999999999999987 7889999998887653
No 68
>PTZ00243 ABC transporter; Provisional
Probab=93.55 E-value=0.083 Score=58.32 Aligned_cols=59 Identities=24% Similarity=0.416 Sum_probs=48.0
Q ss_pred cCCCCCCCEEEEc-CCCceeEEEEecccCCC-CCccEEEEEEeCC-C-------------CccCcEECCEEeeec
Q 026104 156 CSNITVGDRCEVD-PGAKRGVVKYVGQAESI-APGFWVGIQYDEP-L-------------GKHNGIVKGVRYFEC 214 (243)
Q Consensus 156 ~~~~~vG~rv~v~-~~~~~G~vryvG~~~~~-~~g~w~GVelDep-~-------------GkndGs~~G~rYF~c 214 (243)
+=+-.||.||-+. ...-+|++||||.+... .++.++||||.-| . +-|+|.+.|-+.|..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1560)
T PTZ00243 122 AWNCMVGAEVVSTLDASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTP 196 (1560)
T ss_pred ccccccccEEEeeccccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCc
Confidence 4457799999996 34789999999999774 3779999999965 1 238999999999987
No 69
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=93.53 E-value=0.18 Score=45.27 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=53.5
Q ss_pred ceeEEEcCCCCCHHHHHHH-HHhHhCCCCCceEEEEEcC-CCCeeeecCCCCCccCCCCCCCCcEEEEeecCCC
Q 026104 26 FSADVRFPLQMSVESVKDK-LWRKCGTSVNSMSLELYDD-TNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPS 97 (243)
Q Consensus 26 ~~~e~r~~~~~TV~~LK~K-Le~~tGipp~~qrL~l~~~-~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD~~p~ 97 (243)
+..++..+.+-||.+|+.+ +.....+.|..+|+.|+-. .|+.+ -|+.+|.+|+..+|.+|.|-|..|.
T Consensus 13 ~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl----~~~s~l~e~~~~s~~~i~vKDLGpQ 82 (297)
T KOG1639|consen 13 RIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPL----IDNSKLQEYGDGSGATIYVKDLGPQ 82 (297)
T ss_pred eeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccc----cchhHHHHhccCCCCEEEEeccCCc
Confidence 4456778889999999955 5556788898888888654 45553 4566699999999999999999884
No 70
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=93.06 E-value=0.35 Score=35.08 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=42.5
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA 69 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~ 69 (243)
|.|.+....- ....+.++.+.|..+|+.+|...+|.++...+|.+.|.+|..+.
T Consensus 2 ~~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~ 55 (84)
T PF00564_consen 2 VRVKVRYGGD--IRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVT 55 (84)
T ss_dssp EEEEEEETTE--EEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEE
T ss_pred EEEEEEECCe--eEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEE
Confidence 5566654432 11236688999999999999999999999999999999997664
No 71
>PRK10708 hypothetical protein; Provisional
Probab=92.90 E-value=0.55 Score=32.77 Aligned_cols=56 Identities=30% Similarity=0.492 Sum_probs=43.5
Q ss_pred CCCCCEEEEc-CC--CceeEEEEecccCCCCCccEEEEEEeC-CCCccCcEECCEEeeec-CCCceeeecCC
Q 026104 159 ITVGDRCEVD-PG--AKRGVVKYVGQAESIAPGFWVGIQYDE-PLGKHNGIVKGVRYFEC-PPLHGAMVRPD 225 (243)
Q Consensus 159 ~~vG~rv~v~-~~--~~~G~vryvG~~~~~~~g~w~GVelDe-p~GkndGs~~G~rYF~c-~~~~G~Fv~~~ 225 (243)
++|++||.|. .| .|.|+|.-+- ++ ..|++.=|.|++ |. |+-||.- ...-|+||.|.
T Consensus 1 MkvnD~VtVKTDG~~rR~G~iLavE--~F-~EG~MyLvaL~dYP~--------GiWFFNE~~~~~G~FVep~ 61 (62)
T PRK10708 1 MKVNDRVTVKTDGGPRRPGVVLAVE--EF-SEGTMYLVSLEDYPL--------GIWFFNEAGHQDGIFVEKA 61 (62)
T ss_pred CccccEEEEecCCCccccceEEEEe--ec-cCcEEEEEEcCcCCC--------ceEEEeccCCCCceEeccc
Confidence 4789999996 23 5789999884 34 789999999987 53 6778866 77889999874
No 72
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=92.60 E-value=0.65 Score=32.41 Aligned_cols=56 Identities=27% Similarity=0.504 Sum_probs=43.4
Q ss_pred CCCCCEEEEcC-C--CceeEEEEecccCCCCCccEEEEEEeC-CCCccCcEECCEEeeec-CCCceeeecCC
Q 026104 159 ITVGDRCEVDP-G--AKRGVVKYVGQAESIAPGFWVGIQYDE-PLGKHNGIVKGVRYFEC-PPLHGAMVRPD 225 (243)
Q Consensus 159 ~~vG~rv~v~~-~--~~~G~vryvG~~~~~~~g~w~GVelDe-p~GkndGs~~G~rYF~c-~~~~G~Fv~~~ 225 (243)
++|++||.|.. | .|.|+|.-+- ++ ..|++.=|.|++ |. |+-||.- ....|+||.|.
T Consensus 1 MkvnD~VtVKTDG~~rR~G~ilavE--~F-~EG~MYLvaL~dYP~--------GiWFFNE~~~~dG~FVep~ 61 (62)
T PF10781_consen 1 MKVNDRVTVKTDGGPRREGVILAVE--PF-NEGTMYLVALEDYPA--------GIWFFNEKDSPDGTFVEPR 61 (62)
T ss_pred CccccEEEEecCCcccccceEEEEe--ec-cCcEEEEEEcCcCCc--------ceEEEecCCCCCcEEeeec
Confidence 47899999962 3 5789998884 34 789999999987 53 6778865 77889999875
No 73
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=92.19 E-value=1.1 Score=33.64 Aligned_cols=80 Identities=15% Similarity=0.108 Sum_probs=56.3
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeec----CCCCCccCCCCCCCC
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAAL----TDNSRPLGFYSPLQG 86 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l----~~d~~~L~~y~i~dg 86 (243)
...++|.|.-. .+...++||..+.||..|..=++.. |-.|..-+|..-.+ -+.+..+ .+.+.||.+-|+.+.
T Consensus 2 ~~~~~I~iRlp--~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FP-rr~~~~~~~~~~~~~~TL~eaGL~~s 77 (85)
T cd01774 2 PDTVKIVFKLP--NGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFP-RRVLPCLPSEGDPPPPTLLEAGLSNS 77 (85)
T ss_pred CceEEEEEECC--CCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCC-CccccccccccCcCCCCHHHcCCCCc
Confidence 34678888733 4458899999999999999999654 44556666655222 1333222 245779999999999
Q ss_pred cEEEEeec
Q 026104 87 YRLHVIDL 94 (243)
Q Consensus 87 ~~IhVvD~ 94 (243)
..+.|.|+
T Consensus 78 ~~L~V~d~ 85 (85)
T cd01774 78 EVLFVQDL 85 (85)
T ss_pred cEEEEecC
Confidence 98888873
No 74
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=91.91 E-value=0.71 Score=33.19 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=36.8
Q ss_pred eeEEEcC-CCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeee
Q 026104 27 SADVRFP-LQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA 69 (243)
Q Consensus 27 ~~e~r~~-~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~ 69 (243)
...++++ .+.|..+|+++|...++.+...-+|.+.|.+|..+.
T Consensus 11 ~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~ 54 (81)
T cd05992 11 IRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVT 54 (81)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEE
Confidence 4567777 999999999999999999987888999988886653
No 75
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=90.91 E-value=1.3 Score=33.79 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHhHhCCCC-CceEEEEEcCCCCeee
Q 026104 34 LQMSVESVKDKLWRKCGTSV-NSMSLELYDDTNTKVA 69 (243)
Q Consensus 34 ~~~TV~~LK~KLe~~tGipp-~~qrL~l~~~~g~~~~ 69 (243)
++++..+|++||...+.+++ ....|.+.|.+|..+.
T Consensus 23 ~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~ 59 (91)
T cd06398 23 LDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVT 59 (91)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEE
Confidence 36999999999999999998 7788899998888764
No 76
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=89.89 E-value=1.5 Score=32.85 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=44.6
Q ss_pred EEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCC
Q 026104 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFY 81 (243)
Q Consensus 15 ~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y 81 (243)
+..|+.+.. ..-+.++..-|+..|++||+..+.+|+..--|.+.|.+|..+. |.++......|
T Consensus 2 ~fKv~~~g~---~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~IT-lssd~eL~d~~ 64 (82)
T cd06397 2 QFKSSFLGD---TRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEIT-LSSNKELQDFY 64 (82)
T ss_pred eEEEEeCCc---eEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEE-ecchHHHHHHH
Confidence 345555544 2234467789999999999999999998899999888877764 44444333333
No 77
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=89.43 E-value=0.19 Score=46.78 Aligned_cols=67 Identities=13% Similarity=0.016 Sum_probs=52.9
Q ss_pred cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCC--CceEEEEEcCCCCeeeecCCCCCccCCCC
Q 026104 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSV--NSMSLELYDDTNTKVAALTDNSRPLGFYS 82 (243)
Q Consensus 9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp--~~qrL~l~~~~g~~~~~l~~d~~~L~~y~ 82 (243)
..+.-|.+.|++++-+-+..++..+..|||+.||.-|+.+.=-.| .+|||++ +|+. +.|...|.++-
T Consensus 5 ~~e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliY---sgkl----lld~qcl~d~l 73 (391)
T KOG4583|consen 5 IFEFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIY---SGKL----LLDHQCLTDWL 73 (391)
T ss_pred cCCcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHh---hccc----cccchhHHHHH
Confidence 345569999998887777889999999999999999999865554 7899999 6875 46666666653
No 78
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=89.25 E-value=1.1 Score=41.60 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=45.6
Q ss_pred eEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEeecCC
Q 026104 28 ADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP 96 (243)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD~~p 96 (243)
..+.++.+..|.+||+-.+..+|+|+++.+++| .|+.+ .++.++..--+.--+.+|++-.+|
T Consensus 16 l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viF---aGKeL----s~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 16 LPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIF---AGKEL----SNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred eeEEEecCCCHHHHHHHHHHhhCCChhheEEEE---ecccc----ccCceeecccccccchhhhhccCc
Confidence 455667788999999999999999999999999 68874 455555533333334567776666
No 79
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=89.13 E-value=1.8 Score=32.70 Aligned_cols=50 Identities=14% Similarity=0.264 Sum_probs=37.5
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKV 68 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~ 68 (243)
|+|.|.- .+-..-++++++++..+|.+||..++|+. +..+|.+.|. |..+
T Consensus 3 ikVKv~~---~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE-GD~i 52 (86)
T cd06408 3 IRVKVHA---QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD-GDMI 52 (86)
T ss_pred EEEEEEe---cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC-CCCc
Confidence 4555531 22256789999999999999999999995 5667777776 6543
No 80
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=88.56 E-value=5.2 Score=29.04 Aligned_cols=74 Identities=15% Similarity=0.149 Sum_probs=49.8
Q ss_pred ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCC-C-CCccCCCCCCCCcEE
Q 026104 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTD-N-SRPLGFYSPLQGYRL 89 (243)
Q Consensus 12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~-d-~~~L~~y~i~dg~~I 89 (243)
...+|.|.-. .+...+++|+.+.||.+|.+-+....+.....-+|.- .--+.. +.+ | +++|.+.++.+...|
T Consensus 3 ~~~~I~iRlP--dG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t--~~Prk~--l~~~d~~~tL~e~gL~p~~~l 76 (80)
T smart00166 3 DQCRLQIRLP--DGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNS--PFPRRT--FTKDDYSKTLLELALLPSSTL 76 (80)
T ss_pred CeEEEEEEcC--CCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEe--CCCCcC--CccccccCCHHHCCCCCceEE
Confidence 3567777633 3347899999999999999999666665544444433 222222 222 2 689999998888877
Q ss_pred EE
Q 026104 90 HV 91 (243)
Q Consensus 90 hV 91 (243)
.|
T Consensus 77 ~v 78 (80)
T smart00166 77 VL 78 (80)
T ss_pred EE
Confidence 66
No 81
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=88.34 E-value=4.5 Score=29.56 Aligned_cols=75 Identities=15% Similarity=0.117 Sum_probs=49.6
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
..+|.|.-. .+....++|+.+.||.+|.+-+....+.+ .. ..|...--+......+.+.+|.+.|+.+-..|+|.
T Consensus 4 ~~~i~iRlp--~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~--f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 4 ETRIQIRLL--DGTTLKQTFKAREQLAAVRLFVELNTGNG-GP--FTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred EEEEEEECC--CCCEEEEEeCCCChHHHHHHHHHHcCCCC-CC--EEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence 466777633 33478899999999999999998776543 22 23332222222112234789999999999888874
No 82
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=87.98 E-value=3 Score=31.19 Aligned_cols=50 Identities=22% Similarity=0.227 Sum_probs=38.5
Q ss_pred EEEEEEeCCCCCceeEEEcCC--CCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCee
Q 026104 14 VLLRVTHSNLKSFSADVRFPL--QMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKV 68 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~--~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~ 68 (243)
|+|.++...- ..-.++++ ++|+.+|++.+...++++ .-.|.+.|.+|..+
T Consensus 1 V~vKaty~~d---~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKYlDde~e~v 52 (81)
T cd06396 1 VNLKVTYNGE---SQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKYVDEENEEV 52 (81)
T ss_pred CEEEEEECCe---EEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEEEcCCCCEE
Confidence 4556654432 56678888 899999999999999999 66777777777665
No 83
>COG5417 Uncharacterized small protein [Function unknown]
Probab=87.93 E-value=2.4 Score=31.32 Aligned_cols=69 Identities=23% Similarity=0.410 Sum_probs=47.7
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeee-----ecCCCCCccCCCCCCCCcE
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA-----ALTDNSRPLGFYSPLQGYR 88 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~-----~l~~d~~~L~~y~i~dg~~ 88 (243)
|.|..||=+ +....+|++...+|..|=.-+.+ .++++..+-+|..+- .+..++..|.+|++.+|.+
T Consensus 7 VTvD~t~y~--g~~yDLrl~d~~pikklIdivwe-------~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~ 77 (81)
T COG5417 7 VTVDFTNYN--GGTYDLRLPDYLPIKKLIDIVWE-------SLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDI 77 (81)
T ss_pred EEEEeEecC--CceEEEeccccchHHHHHHHHHH-------HhhccccccCCCEEEEeccceEecCCceEEeccccCCCE
Confidence 444456443 55789999999999877665544 455555555555442 2456788899999999998
Q ss_pred EEE
Q 026104 89 LHV 91 (243)
Q Consensus 89 IhV 91 (243)
+.+
T Consensus 78 Lei 80 (81)
T COG5417 78 LEI 80 (81)
T ss_pred EEe
Confidence 764
No 84
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=87.10 E-value=1.3 Score=32.90 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=36.9
Q ss_pred ceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCC
Q 026104 26 FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNT 66 (243)
Q Consensus 26 ~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~ 66 (243)
+.+-+++++..+.++|.++|......+|+..+|++++.++.
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~ 47 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGED 47 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCC
Confidence 35678999999999999999999999999999999987554
No 85
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=86.56 E-value=8.9 Score=28.27 Aligned_cols=77 Identities=14% Similarity=0.011 Sum_probs=54.7
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
+..++|.|.- ..+...++||..+.|++.|-.=+... |.++..-+|.=-- --+.+. -.+.+.+|.+.|+....+|.
T Consensus 2 ~~~~~i~iRl--P~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~f-PRk~~~-~~d~~~TL~e~gL~p~~~L~ 76 (80)
T cd01771 2 EPISKLRVRT--PSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSW-PRRDLT-QLDPNFTLLELKLYPQETLI 76 (80)
T ss_pred CCeEEEEEEC--CCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCC-CCCCCc-CCCCCCcHHHcCCCCCcEEE
Confidence 4678888883 34458899999999999999988764 7777666654321 223322 12446799999998888877
Q ss_pred Ee
Q 026104 91 VI 92 (243)
Q Consensus 91 Vv 92 (243)
|.
T Consensus 77 Ve 78 (80)
T cd01771 77 LE 78 (80)
T ss_pred EE
Confidence 74
No 86
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=86.14 E-value=3.4 Score=41.04 Aligned_cols=84 Identities=18% Similarity=0.237 Sum_probs=53.8
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHh--CCC------CCceEEEEEcCCCCeeeecCCCC-------
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKC--GTS------VNSMSLELYDDTNTKVAALTDNS------- 75 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~t--Gip------p~~qrL~l~~~~g~~~~~l~~d~------- 75 (243)
...+.|.|.......-....++=.-.||.|+|+||-... ++| +.++.|+.+.+.+..+. |.+++
T Consensus 187 ~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~i-L~D~D~ts~~~~ 265 (539)
T PF08337_consen 187 YKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLI-LQDEDSTSKVEG 265 (539)
T ss_dssp S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEE-ESSSSTTSEEET
T ss_pred eEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCccc-ccCCCCCcccCC
Confidence 345777765433333357788888899999999976542 322 47789999876543322 22221
Q ss_pred -----CccCCCCCCCCcEEEEeecC
Q 026104 76 -----RPLGFYSPLQGYRLHVIDLD 95 (243)
Q Consensus 76 -----~~L~~y~i~dg~~IhVvD~~ 95 (243)
.||..|+|.||++|-++...
T Consensus 266 ~wkrLNTL~HY~V~dga~vaLv~k~ 290 (539)
T PF08337_consen 266 GWKRLNTLAHYKVPDGATVALVPKQ 290 (539)
T ss_dssp TEEE--BHHHHT--TTEEEEEEES-
T ss_pred CceEeccHhhcCCCCCceEEEeecc
Confidence 38999999999999999863
No 87
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=83.62 E-value=9.1 Score=27.48 Aligned_cols=71 Identities=10% Similarity=0.075 Sum_probs=44.8
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcC-CCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDD-TNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~-~g~~~~~l~~d~~~L~~y~i~dg~~IhV 91 (243)
.+|.|.-.+ +...++||+.+.||.+|.+=+.....- +..-. |... ..+.+. -.+.+.+|.+.|+.+. .+.|
T Consensus 3 t~i~iRlpd--G~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~--L~t~~Pr~~~~-~~~~~~TL~e~gL~~s-~~~~ 74 (77)
T cd01767 3 TKIQIRLPD--GKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFT--LMTSFPRRVLT-DLDYELTLQEAGLVNE-VVFQ 74 (77)
T ss_pred EEEEEEcCC--CCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEE--EEeCCCCccCC-CCCccCcHHHcCCccc-eEEE
Confidence 456666333 347899999999999999998876543 22233 3322 223321 1136889999999854 4444
No 88
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=82.39 E-value=13 Score=27.26 Aligned_cols=71 Identities=14% Similarity=0.074 Sum_probs=46.6
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCC-CceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSV-NSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp-~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I 89 (243)
..+|.|.-. .+....+||+.+.||.+|.+=+....+.+. ..-.|.--. ..+. +.+++.+|.+-|+.+.+.+
T Consensus 4 ~t~iqiRlp--dG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~f-P~k~---l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 4 TTSIQIRLA--DGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAF-PVKE---LSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eeEEEEECC--CCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCC-CCcc---cCCCCCcHHHCCCcCcEEE
Confidence 456667633 345788999999999999999998765332 223332211 2343 4466889999998865543
No 89
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=81.58 E-value=14 Score=28.60 Aligned_cols=74 Identities=12% Similarity=0.196 Sum_probs=60.5
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
+.-|+|.|.. -.......++..+.++.-|..--....|++.++-|..| +|+.+ .+..|=.++.+++|..|-
T Consensus 18 ~~hi~LKV~g--qd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlF---dG~rI----~~~~TP~~L~mEd~D~Ie 88 (99)
T KOG1769|consen 18 SEHINLKVKG--QDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLF---DGQRI----RETHTPADLEMEDGDEIE 88 (99)
T ss_pred cceEEEEEec--CCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEE---CCcCc----CCCCChhhhCCcCCcEEE
Confidence 4569999973 22235678899999999999999999999999999888 78774 566788899999999988
Q ss_pred Eee
Q 026104 91 VID 93 (243)
Q Consensus 91 VvD 93 (243)
|.=
T Consensus 89 v~~ 91 (99)
T KOG1769|consen 89 VVQ 91 (99)
T ss_pred EEe
Confidence 763
No 90
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=80.53 E-value=8.1 Score=29.16 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=40.7
Q ss_pred CCCceeEEEcCCCCCHHHHHHHHHhHhCCCC---CceEEEEEcCCCCeee
Q 026104 23 LKSFSADVRFPLQMSVESVKDKLWRKCGTSV---NSMSLELYDDTNTKVA 69 (243)
Q Consensus 23 ~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp---~~qrL~l~~~~g~~~~ 69 (243)
.+++.+-.++.+++.+.+|++-|....|+.. ..-.|.+.|.+|..+.
T Consensus 8 ~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~Vl 57 (86)
T cd06409 8 PKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVL 57 (86)
T ss_pred CCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEEE
Confidence 4667888899999999999999999999997 5788899888887653
No 91
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=77.83 E-value=2.7 Score=31.56 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHH-HhHhCCCCCceEEEEEcCCCCeeee------cCCCCCccCCCCCCCCcEEEEeecC
Q 026104 34 LQMSVESVKDKL-WRKCGTSVNSMSLELYDDTNTKVAA------LTDNSRPLGFYSPLQGYRLHVIDLD 95 (243)
Q Consensus 34 ~~~TV~~LK~KL-e~~tGipp~~qrL~l~~~~g~~~~~------l~~d~~~L~~y~i~dg~~IhVvD~~ 95 (243)
..+|+.+|-+++ ....|.......+ .++.+.. -....++|+.+|+.+|+.+.|.|-.
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg~~~P~v~~-----~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D~~ 70 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLGMNEPDVSV-----GGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDDFD 70 (87)
T ss_dssp TT-BHHHHHHHCCCCCS--SSEEEEE-----S-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEETT
T ss_pred hhCcHHHHHHHHHHhccCCCCCEEEe-----CCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEEcC
Confidence 479999999985 4477776644332 2222221 1234789999999999999999954
No 92
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=75.72 E-value=10 Score=29.13 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=32.5
Q ss_pred EEEEEEeCCCCCceeEEEcC--CCCCHHHHHHHHHhHhCCCCCce--EEEEEcCCCCe
Q 026104 14 VLLRVTHSNLKSFSADVRFP--LQMSVESVKDKLWRKCGTSVNSM--SLELYDDTNTK 67 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~--~~~TV~~LK~KLe~~tGipp~~q--rL~l~~~~g~~ 67 (243)
|.|.++. .+. -.++.++ ...|+..||..|....+-.++.. ||++ +|+.
T Consensus 3 l~IRFs~-sip--Dl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~---~Gr~ 54 (97)
T PF10302_consen 3 LTIRFSD-SIP--DLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIY---AGRL 54 (97)
T ss_pred EEEEECC-CCC--CceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeee---cCcc
Confidence 4555543 232 2455556 88999999999999996555555 5555 6876
No 93
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=75.12 E-value=16 Score=27.45 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=45.4
Q ss_pred eeEEEcCCCCCHHHHHHHHHhHhCCCCC-ceEEEEEcCCCCeeeecCC----CCCccCCCCCCCCcEEEEe
Q 026104 27 SADVRFPLQMSVESVKDKLWRKCGTSVN-SMSLELYDDTNTKVAALTD----NSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGipp~-~qrL~l~~~~g~~~~~l~~----d~~~L~~y~i~dg~~IhVv 92 (243)
..-.+++++.|..+|++|+..++..... .-++...|.+|..+..-.+ ..-.|-.-+=.++-.|||-
T Consensus 11 i~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~~~l~ihvf 81 (83)
T cd06404 11 IMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYELNKDSELNIHVF 81 (83)
T ss_pred EEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHhcCcccEEEEec
Confidence 4567889999999999999999999874 5677788888877542111 1112333344455677774
No 94
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=73.55 E-value=14 Score=32.05 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=40.9
Q ss_pred eEEEEEEeCCCCCc-eeEEEcCCCCCHHHHHHHHHhHhCCCCC-ceEEEEEcC-CCCeeeecCCCCCccCCCCCCCCcEE
Q 026104 13 SVLLRVTHSNLKSF-SADVRFPLQMSVESVKDKLWRKCGTSVN-SMSLELYDD-TNTKVAALTDNSRPLGFYSPLQGYRL 89 (243)
Q Consensus 13 ~v~v~It~s~~~~~-~~e~r~~~~~TV~~LK~KLe~~tGipp~-~qrL~l~~~-~g~~~~~l~~d~~~L~~y~i~dg~~I 89 (243)
.++|+...+++... ..++.++++-||.+|.++|....+++.+ ..+|-+..- +++... ....+.+|... .+...+
T Consensus 20 ~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~-~~~~d~~i~~l--~~~~~~ 96 (213)
T PF14533_consen 20 QFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYK-ILSEDEPISSL--NDYITL 96 (213)
T ss_dssp -EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEE-EE-TTSBGGGS----TTEE
T ss_pred EEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEe-ecCCCCchhhc--cCccee
Confidence 47776654444433 5889999999999999999999999876 446655543 444433 33466666666 333345
Q ss_pred EEeec
Q 026104 90 HVIDL 94 (243)
Q Consensus 90 hVvD~ 94 (243)
.+...
T Consensus 97 r~E~i 101 (213)
T PF14533_consen 97 RIEEI 101 (213)
T ss_dssp EEEE-
T ss_pred eeecC
Confidence 55443
No 95
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=72.35 E-value=32 Score=24.38 Aligned_cols=50 Identities=14% Similarity=0.154 Sum_probs=35.9
Q ss_pred eeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
..++.++...|+.+|-+.| |+++....+.+ +|..+. .++.+++|.+|-++
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~v---Ng~iv~---------~~~~l~~gD~Veii 64 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKV---NGKVAL---------EDDPVKDGDYVEVI 64 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEE---CCEECC---------CCcCcCCCCEEEEE
Confidence 3466778899999998877 77776655555 565531 35668888888776
No 96
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=72.19 E-value=16 Score=26.43 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=40.4
Q ss_pred ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCC--ceEEE-EEcCCCCeeeecCCCCCcc
Q 026104 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVN--SMSLE-LYDDTNTKVAALTDNSRPL 78 (243)
Q Consensus 12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~--~qrL~-l~~~~g~~~~~l~~d~~~L 78 (243)
.+|+|+............++++++.|..+|-..+-.++|++.+ +=.|. +....|.. -.|.++..+|
T Consensus 3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~e-r~L~~~E~pl 71 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEE-RPLDDDECPL 71 (93)
T ss_dssp EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEE-EEETTTSBHH
T ss_pred eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEE-EEcCCCCchH
Confidence 4677777422211126778999999999999999999999433 33452 22223322 2355555443
No 97
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.04 E-value=10 Score=33.40 Aligned_cols=58 Identities=22% Similarity=0.188 Sum_probs=47.6
Q ss_pred EcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCC--cEEEEeecC
Q 026104 31 RFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG--YRLHVIDLD 95 (243)
Q Consensus 31 r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg--~~IhVvD~~ 95 (243)
..+.-.|+.++|.+|+...|+.|-+|++.+ +|.++ -+...|..-.++.| ..|.++-..
T Consensus 162 ta~~~Dtv~eik~~L~Aaeg~D~~sQrif~---Sg~~l----~dkt~LeEc~iekg~rYvlqviVlq 221 (231)
T KOG0013|consen 162 TAPHYDTVGEIKRALRAAEGVDPLSQRIFF---SGGVL----VDKTDLEECKIEKGQRYVLQVIVLQ 221 (231)
T ss_pred cccCcCcHHHHHHHHHHhhccchhhheeec---cCCce----eccccceeeeecCCCEEEEEEEecc
Confidence 345678999999999999999999999887 67764 57778899999999 667776544
No 98
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=69.86 E-value=43 Score=24.97 Aligned_cols=77 Identities=12% Similarity=0.007 Sum_probs=55.5
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
.-+|.|+- ..+...|+||..+.||..|-.=+.. -|.++..-+|.=-.+ -+.+.. .+.+.+|.+.|+.+-.+|.|.
T Consensus 5 ~t~i~vRl--P~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FP-Rr~~~~-~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 5 KARLMLRY--PDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFP-RRKLSH-LDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred eeEEEEEC--CCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCC-CcccCC-cccCCCHHHcCCCCCcEEEEe
Confidence 35667763 3445899999999999999987777 477777666654222 233332 344689999999999999998
Q ss_pred ec
Q 026104 93 DL 94 (243)
Q Consensus 93 D~ 94 (243)
|-
T Consensus 80 ~r 81 (82)
T cd01773 80 ER 81 (82)
T ss_pred cC
Confidence 74
No 99
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=68.42 E-value=23 Score=24.25 Aligned_cols=43 Identities=30% Similarity=0.518 Sum_probs=32.6
Q ss_pred CCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCcc
Q 026104 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKH 202 (243)
Q Consensus 159 ~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~Gkn 202 (243)
+++||.|++.+|+-+=||.++|+... ..+.|+=-.|-+..|..
T Consensus 1 f~~GDvV~LKSGGp~MTV~~v~~~~~-~~~~~v~C~WFd~~~~~ 43 (53)
T PF09926_consen 1 FKIGDVVQLKSGGPRMTVTEVGPNAG-ASGGWVECQWFDGHGEQ 43 (53)
T ss_pred CCCCCEEEEccCCCCeEEEEcccccc-CCCCeEEEEeCCCCCcc
Confidence 57899999988888999999999866 56666666665544443
No 100
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=66.17 E-value=26 Score=24.74 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=36.1
Q ss_pred eEEEcCCCCCHHHHHHHHHhHhCC----CCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 28 ADVRFPLQMSVESVKDKLWRKCGT----SVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGi----pp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
.++.++...||.+|.+.|....+- ......+.+ +|+.+. .++.+++|.+|.++
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~v---Ng~~v~---------~~~~l~~gD~v~i~ 74 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGLLEELLARVRIAV---NGEYVR---------LDTPLKDGDEVAII 74 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEE---CCeEcC---------CCcccCCCCEEEEe
Confidence 566777799999999999887542 223334444 454421 45678999998886
No 101
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=64.67 E-value=18 Score=29.16 Aligned_cols=31 Identities=13% Similarity=0.279 Sum_probs=22.4
Q ss_pred cCC-CCCHHHHHHHHHh----HhCCCC------CceEEEEEc
Q 026104 32 FPL-QMSVESVKDKLWR----KCGTSV------NSMSLELYD 62 (243)
Q Consensus 32 ~~~-~~TV~~LK~KLe~----~tGipp------~~qrL~l~~ 62 (243)
+++ +.|+.+|++.+.. ..|.+| +.|+|....
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~A 63 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKA 63 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecC
Confidence 777 9999998876544 467766 677777653
No 102
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=64.65 E-value=16 Score=25.98 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=37.0
Q ss_pred CceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 25 SFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 25 ~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
.+...+++.|+.|+.++=+.--.++|++++.=.|.+ .++.+ |-+.+...-|+..|+.+.
T Consensus 6 ~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h---~~k~l----dlslp~R~snL~n~akLe 64 (65)
T PF11470_consen 6 FRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKH---NNKPL----DLSLPFRLSNLPNNAKLE 64 (65)
T ss_dssp S-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEE---TTEEE----SSS-BHHHH---SS-EEE
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEE---CCEEe----ccccceeecCCCCCCEEe
Confidence 356778899999999999999999999999778877 44442 566777777777777654
No 103
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=64.37 E-value=31 Score=26.44 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=30.0
Q ss_pred eeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcC
Q 026104 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDD 63 (243)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~ 63 (243)
..-+.++.++|..+|+.||..+++++.. +.|.+.-+
T Consensus 24 tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~Lp 59 (97)
T cd06410 24 TRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQLP 59 (97)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEEcC
Confidence 4456789999999999999999999987 77777533
No 104
>PRK06437 hypothetical protein; Provisional
Probab=60.96 E-value=34 Score=24.15 Aligned_cols=51 Identities=8% Similarity=0.137 Sum_probs=37.5
Q ss_pred eeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
-.++.++...|+.+|=+.| |++++..-+.+ +|..+ . .++.+++|.+|-++-
T Consensus 12 ~~~~~i~~~~tv~dLL~~L----gi~~~~vaV~v---Ng~iv----~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 12 NKTIEIDHELTVNDIIKDL----GLDEEEYVVIV---NGSPV----L-----EDHNVKKEDDVLILE 62 (67)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEE---CCEEC----C-----CceEcCCCCEEEEEe
Confidence 3567778899999987665 88887776665 67653 1 566788999888764
No 105
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=57.35 E-value=19 Score=36.97 Aligned_cols=38 Identities=11% Similarity=0.151 Sum_probs=34.7
Q ss_pred CCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEE
Q 026104 24 KSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELY 61 (243)
Q Consensus 24 ~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~ 61 (243)
.+..++.-++++.|+..|+++|+.-||||...|.|.+.
T Consensus 323 ~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e 360 (732)
T KOG4250|consen 323 QATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFE 360 (732)
T ss_pred cceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeee
Confidence 33478889999999999999999999999999999995
No 106
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=53.98 E-value=1e+02 Score=23.86 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=37.2
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCC-CceEEEEEc
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSV-NSMSLELYD 62 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp-~~qrL~l~~ 62 (243)
.|+|+=. +.+ ...+..+++.|+.||=..|..++.+++ ...+|.++-
T Consensus 4 ~IRIFr~--D~T--f~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~ 50 (97)
T cd01775 4 CIRVFRS--DGT--FTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKK 50 (97)
T ss_pred EEEEEec--CCc--EEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEE
Confidence 4666654 222 677889999999999999999999988 788999974
No 107
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=53.10 E-value=57 Score=22.48 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=35.3
Q ss_pred EEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 29 DVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 29 e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
++.++..+|+.+|.++| ++++....+.+ +|+.+. ...-..+.+++|.+|-++
T Consensus 8 ~~~~~~~~tv~~ll~~l----~~~~~~i~V~v---Ng~~v~-----~~~~~~~~L~~gD~V~ii 59 (65)
T cd00565 8 PREVEEGATLAELLEEL----GLDPRGVAVAL---NGEIVP-----RSEWASTPLQDGDRIEIV 59 (65)
T ss_pred EEEcCCCCCHHHHHHHc----CCCCCcEEEEE---CCEEcC-----HHHcCceecCCCCEEEEE
Confidence 46678899999999887 46777776665 666532 112233567888888776
No 108
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=52.95 E-value=4.4 Score=30.35 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=39.4
Q ss_pred EEcCCCCCHHHHHHHHHhHh--C-----CCCCceEEEEEcCCCCee--eecCCCCCccCCCCCCCCcEEEEeecC
Q 026104 30 VRFPLQMSVESVKDKLWRKC--G-----TSVNSMSLELYDDTNTKV--AALTDNSRPLGFYSPLQGYRLHVIDLD 95 (243)
Q Consensus 30 ~r~~~~~TV~~LK~KLe~~t--G-----ipp~~qrL~l~~~~g~~~--~~l~~d~~~L~~y~i~dg~~IhVvD~~ 95 (243)
+.++++||+.+|=+.|...- . +....-.|.+... ..+ ..-.+=+++|.+. +.+|..|+|.|..
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~p--p~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD~~ 72 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSP--PSLEEATRPNLSKKLKEL-LSDGEEITVTDPT 72 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSS--HHHHHHTGGGGSSBTTTT-HHSSEEEEEEETT
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCC--HHHHHHhhhhhhhhHHHH-hcCCCEEEEECCC
Confidence 36799999999999988762 1 1122223333111 000 0112347899999 9999999999964
No 109
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=51.51 E-value=59 Score=22.37 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=33.8
Q ss_pred EEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 29 DVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 29 e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
++.++..+||.+|.+.| ++++....+.+ +|..+. ...-..+.+++|.+|-++
T Consensus 7 ~~~~~~~~tv~~ll~~l----~~~~~~v~v~v---N~~iv~-----~~~~~~~~L~~gD~veii 58 (64)
T TIGR01683 7 PVEVEDGLTLAALLESL----GLDPRRVAVAV---NGEIVP-----RSEWDDTILKEGDRIEIV 58 (64)
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCeEEEEE---CCEEcC-----HHHcCceecCCCCEEEEE
Confidence 56678889999999876 56665555555 555431 112334567888887776
No 110
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=50.51 E-value=96 Score=30.17 Aligned_cols=74 Identities=15% Similarity=0.132 Sum_probs=59.1
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCC----CCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGT----SVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGi----pp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~ 88 (243)
..+|+|.... +..+.-+|.+..+.+|=--|-++.|= +.....-.|...+|.. .+.+++|.+-++.||..
T Consensus 2 l~RVtV~~~~---~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~p----L~~~~sL~~~gV~DG~~ 74 (452)
T TIGR02958 2 LCRVTVLAGR---RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSP----LDPDASLAEAGVRDGEL 74 (452)
T ss_pred eEEEEEeeCC---eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCC----CCCCCCHHHcCCCCCCe
Confidence 4678886332 46888899999999999999999976 4446677777667766 37899999999999999
Q ss_pred EEEee
Q 026104 89 LHVID 93 (243)
Q Consensus 89 IhVvD 93 (243)
+++.=
T Consensus 75 L~L~p 79 (452)
T TIGR02958 75 LVLVP 79 (452)
T ss_pred EEEee
Confidence 99874
No 111
>COG3462 Predicted membrane protein [Function unknown]
Probab=46.07 E-value=7.5 Score=30.74 Aligned_cols=17 Identities=47% Similarity=0.524 Sum_probs=14.9
Q ss_pred eeecCHHHHhcchhhHH
Q 026104 113 KYTISEEEYSKRDGTFR 129 (243)
Q Consensus 113 ky~msee~Y~~r~dtvr 129 (243)
|=++|||||.++-+|++
T Consensus 100 kGEItEEEY~r~~~~ir 116 (117)
T COG3462 100 KGEITEEEYRRIIRTIR 116 (117)
T ss_pred cCCCCHHHHHHHHHHhc
Confidence 45899999999999876
No 112
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=45.29 E-value=92 Score=21.29 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=36.3
Q ss_pred EEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 29 DVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 29 e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
.+.++...||.+|-.. .|++++..-+.+ +|..+. ...-.+..+++|++|-++-
T Consensus 9 ~~~~~~~~tl~~lL~~----l~~~~~~vav~v---Ng~iv~-----r~~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 9 PRELPDGESVAALLAR----EGLAGRRVAVEV---NGEIVP-----RSQHASTALREGDVVEIVH 61 (66)
T ss_pred EEEcCCCCCHHHHHHh----cCCCCCeEEEEE---CCeEeC-----HHHcCcccCCCCCEEEEEE
Confidence 4567888999988765 488888777776 565532 1223455678999888763
No 113
>PRK07440 hypothetical protein; Provisional
Probab=43.33 E-value=1.2e+02 Score=21.55 Aligned_cols=53 Identities=13% Similarity=0.131 Sum_probs=37.2
Q ss_pred EEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 29 DVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 29 e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++.++..+||.+|-..| |+++...-+.+ +|..+. ...-.++.+++|.+|-|+-
T Consensus 13 ~~~~~~~~tl~~lL~~l----~~~~~~vav~~---N~~iv~-----r~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 13 TRTCSSGTSLPDLLQQL----GFNPRLVAVEY---NGEILH-----RQFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred EEEcCCCCCHHHHHHHc----CCCCCeEEEEE---CCEEeC-----HHHcCceecCCCCEEEEEE
Confidence 46778899999887644 67887777777 566542 2234556688998888874
No 114
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=41.40 E-value=1.5e+02 Score=22.07 Aligned_cols=66 Identities=9% Similarity=0.095 Sum_probs=43.9
Q ss_pred cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (243)
Q Consensus 9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~ 88 (243)
.+...++|.| |- -.+.++...||.+|=+.| ++++...-+.+ +|..+. ...-..+-+++|.+
T Consensus 14 ~~~~~m~I~V---NG----~~~~~~~~~tl~~LL~~l----~~~~~~vAVev---Ng~iVp-----r~~w~~t~L~egD~ 74 (84)
T PRK06083 14 AAMVLITISI---ND----QSIQVDISSSLAQIIAQL----SLPELGCVFAI---NNQVVP-----RSEWQSTVLSSGDA 74 (84)
T ss_pred CCCceEEEEE---CC----eEEEcCCCCcHHHHHHHc----CCCCceEEEEE---CCEEeC-----HHHcCcccCCCCCE
Confidence 4444566666 21 356778899998887654 77877777777 676542 23455666889998
Q ss_pred EEEee
Q 026104 89 LHVID 93 (243)
Q Consensus 89 IhVvD 93 (243)
|.|+-
T Consensus 75 IEIv~ 79 (84)
T PRK06083 75 ISLFQ 79 (84)
T ss_pred EEEEE
Confidence 88874
No 115
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=41.24 E-value=1.2e+02 Score=21.17 Aligned_cols=58 Identities=10% Similarity=0.061 Sum_probs=42.3
Q ss_pred CceeEEEcCCCCCHHHHHHHHHhHhCCCCCce-EEEE-EcCCCCeeeecCCCCCccCCCCCC
Q 026104 25 SFSADVRFPLQMSVESVKDKLWRKCGTSVNSM-SLEL-YDDTNTKVAALTDNSRPLGFYSPL 84 (243)
Q Consensus 25 ~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~q-rL~l-~~~~g~~~~~l~~d~~~L~~y~i~ 84 (243)
+...+..++++.|+.+|=+++-.+.|+.-... -|.+ .+.++.... .+.+++|..+...
T Consensus 6 ~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~w--L~~~k~l~~q~~~ 65 (80)
T PF09379_consen 6 GTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHW--LDLDKKLKKQLKK 65 (80)
T ss_dssp EEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEE--E-SSSBGGGSTBT
T ss_pred CCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCccee--ccCcccHHHHcCC
Confidence 34677889999999999999999999986544 6777 455665543 3566777776655
No 116
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=39.43 E-value=1.1e+02 Score=20.95 Aligned_cols=51 Identities=10% Similarity=0.166 Sum_probs=33.3
Q ss_pred EEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 30 VRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 30 ~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
+.++ ..|+.+|.+.| +++++...+.+ ++..+ ......+..+++|.+|-++-
T Consensus 10 ~~~~-~~tl~~Ll~~l----~~~~~~vavav---N~~iv-----~~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 10 LQTE-ATTLALLLAEL----DYEGNWLATAV---NGELV-----HKEARAQFVLHEGDRIEILS 60 (65)
T ss_pred EEcC-cCcHHHHHHHc----CCCCCeEEEEE---CCEEc-----CHHHcCccccCCCCEEEEEE
Confidence 3443 46999998776 67775555565 55543 12344567789999988763
No 117
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=38.34 E-value=1.5e+02 Score=24.27 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=28.7
Q ss_pred ceeEEEcCCCCCHHHHHHHHHhHhCCCCCce-EEEEEc
Q 026104 26 FSADVRFPLQMSVESVKDKLWRKCGTSVNSM-SLELYD 62 (243)
Q Consensus 26 ~~~e~r~~~~~TV~~LK~KLe~~tGipp~~q-rL~l~~ 62 (243)
...++++++++|+.+|.+.+-...|++.... -|.+.+
T Consensus 14 ~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~ 51 (207)
T smart00295 14 TTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFED 51 (207)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEc
Confidence 3678999999999999999999999954222 444443
No 118
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=37.57 E-value=18 Score=21.81 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=11.9
Q ss_pred ecCHHHHhcchhhHH
Q 026104 115 TISEEEYSKRDGTFR 129 (243)
Q Consensus 115 ~msee~Y~~r~dtvr 129 (243)
.||+|||+++..-++
T Consensus 16 ~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 16 EISEEEYEQKKARLL 30 (31)
T ss_pred CCCHHHHHHHHHHHh
Confidence 599999999876554
No 119
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=37.50 E-value=39 Score=18.85 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=12.9
Q ss_pred CCCCCEEEEcCCCceeEE
Q 026104 159 ITVGDRCEVDPGAKRGVV 176 (243)
Q Consensus 159 ~~vG~rv~v~~~~~~G~v 176 (243)
+.+|++|.|..+...|.+
T Consensus 2 ~~~G~~V~I~~G~~~g~~ 19 (28)
T smart00739 2 FEVGDTVRVIAGPFKGKV 19 (28)
T ss_pred CCCCCEEEEeECCCCCcE
Confidence 678999999756555443
No 120
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=36.20 E-value=1e+02 Score=27.34 Aligned_cols=48 Identities=6% Similarity=0.060 Sum_probs=31.9
Q ss_pred EEEEEEeCCCCC-ceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEE
Q 026104 14 VLLRVTHSNLKS-FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELY 61 (243)
Q Consensus 14 v~v~It~s~~~~-~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~ 61 (243)
|.|.++...... ...++.++..+|..+|.+++..+.|++|...||.-.
T Consensus 177 v~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~~ 225 (249)
T PF12436_consen 177 VEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFTV 225 (249)
T ss_dssp EEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE--
T ss_pred EEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEe
Confidence 556554322222 367888999999999999999999999988887664
No 121
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=35.75 E-value=1.7e+02 Score=21.15 Aligned_cols=42 Identities=12% Similarity=0.036 Sum_probs=32.4
Q ss_pred ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCC
Q 026104 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVN 54 (243)
Q Consensus 12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~ 54 (243)
.+|+|+... ........+.+++++|..++-..+..++|++.+
T Consensus 3 ~~lrV~~~~-~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~ 44 (90)
T smart00314 3 FVLRVYVDD-LPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDD 44 (90)
T ss_pred eEEEEeccc-CCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCC
Confidence 467777742 122236788999999999999999999999864
No 122
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=34.92 E-value=39 Score=25.15 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=22.0
Q ss_pred hhcCCCCCCCEEEEcCCCceeEEEEecc
Q 026104 154 DLCSNITVGDRCEVDPGAKRGVVKYVGQ 181 (243)
Q Consensus 154 ~~~~~~~vG~rv~v~~~~~~G~vryvG~ 181 (243)
+....+++|++|... ++..|+|.-++.
T Consensus 33 ~m~~~L~~Gd~VvT~-gGi~G~V~~i~d 59 (84)
T TIGR00739 33 KLIESLKKGDKVLTI-GGIIGTVTKIAE 59 (84)
T ss_pred HHHHhCCCCCEEEEC-CCeEEEEEEEeC
Confidence 345679999999987 789999998853
No 123
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=34.47 E-value=1.1e+02 Score=23.13 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHhHh-CCCCCceEEEEEcCCCCeee
Q 026104 34 LQMSVESVKDKLWRKC-GTSVNSMSLELYDDTNTKVA 69 (243)
Q Consensus 34 ~~~TV~~LK~KLe~~t-Gipp~~qrL~l~~~~g~~~~ 69 (243)
.+.|..+|++++..++ +...+.-.|.++|.+|..+.
T Consensus 25 ~~~s~~~L~~~V~~~f~~l~~~~ftlky~DeeGDlvt 61 (87)
T cd06402 25 VSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEEGDLVA 61 (87)
T ss_pred CCcCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEe
Confidence 4577899999999998 55567788999999998875
No 124
>TIGR02266 gmx_TIGR02266 Myxococcus xanthus paralogous domain TIGR02266. This domain is related to Type IV pilus assembly protein PilZ (Pfam model pfam07238). It is found in at least 12 copies in Myxococcus xanthus DK 1622.
Probab=33.65 E-value=1.2e+02 Score=21.85 Aligned_cols=41 Identities=29% Similarity=0.575 Sum_probs=27.2
Q ss_pred CCCCCCCEEEEc---CC-----CceeEEEEecccCCCCCccEEEEEEeCC
Q 026104 157 SNITVGDRCEVD---PG-----AKRGVVKYVGQAESIAPGFWVGIQYDEP 198 (243)
Q Consensus 157 ~~~~vG~rv~v~---~~-----~~~G~vryvG~~~~~~~g~w~GVelDep 198 (243)
..+.+|++|.+. ++ ...|.|+|+-+... ...+++||+|.+.
T Consensus 35 ~~~~~g~~v~l~l~l~~~~~~i~~~g~Vv~~~~~~~-~~~~~~Gv~F~~~ 83 (96)
T TIGR02266 35 KPLAVGTRVELKLTLPGGERPVELKGVVAWVRPAAD-GGPPGMGVRFEDL 83 (96)
T ss_pred CCcCCCCEEEEEEEcCCCCeEEEEEEEEEEeCCCCC-CCCCeeEEEeccC
Confidence 467889988884 33 24788888854322 1236899999764
No 125
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=33.38 E-value=67 Score=23.50 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=27.5
Q ss_pred eeEEEcC-CCCCHHHHHHHHHhHhCC-CCCceEEEEEcCCC
Q 026104 27 SADVRFP-LQMSVESVKDKLWRKCGT-SVNSMSLELYDDTN 65 (243)
Q Consensus 27 ~~e~r~~-~~~TV~~LK~KLe~~tGi-pp~~qrL~l~~~~g 65 (243)
...+-|+ .+++|.+||..|-...+. ...+-.|.++++..
T Consensus 11 ~~~i~fdG~~Isv~dLKr~I~~~~~lg~~~dfdL~i~na~t 51 (74)
T PF08783_consen 11 YDTITFDGTSISVFDLKREIIEKKKLGKGTDFDLVIYNAQT 51 (74)
T ss_dssp EEEEEESSSEEEHHHHHHHHHHHHT---TTTEEEEEEESSS
T ss_pred ccEEEECCCeeEHHHHHHHHHHHhCCCcCCcCCEEEECCCC
Confidence 3445565 589999999999887776 55567888887643
No 126
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=32.09 E-value=1.4e+02 Score=22.52 Aligned_cols=39 Identities=18% Similarity=0.068 Sum_probs=29.2
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCc
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNS 55 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~ 55 (243)
+|+|+.. +.+ +..+-++..||..++++.|..+.++.++.
T Consensus 4 vvkv~~~--Dg~--sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~ 42 (85)
T cd01787 4 VVKVYSE--DGA--SKSLEVDERMTARDVCQLLVDKNHCQDDS 42 (85)
T ss_pred EEEEEec--CCC--eeEEEEcCCCcHHHHHHHHHHHhCCCCCC
Confidence 4566653 333 44566799999999999999999987643
No 127
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=31.85 E-value=2.6e+02 Score=22.16 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=44.6
Q ss_pred ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCC-----CCceEEEEEcCCCCeeeecCCCCCcc
Q 026104 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTS-----VNSMSLELYDDTNTKVAALTDNSRPL 78 (243)
Q Consensus 12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGip-----p~~qrL~l~~~~g~~~~~l~~d~~~L 78 (243)
++++.+..-...+...--+|++..+|..++-+-|-.++-+. +..--|.....+|.. ..|.+++.+|
T Consensus 22 gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~nGe~-RKL~d~E~PL 92 (112)
T cd01782 22 GVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHENGEE-RRLLDDEKPL 92 (112)
T ss_pred eEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEecCCce-EEcCCcCCCe
Confidence 57888887555443467799999999999999999998855 444455555555532 2355555554
No 128
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=30.58 E-value=1.8e+02 Score=20.12 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=34.7
Q ss_pred EEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 29 DVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 29 e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
.+.++...||.+|=..| |+++..--+.+ ++..+- .+ ....+ +++|.+|-++
T Consensus 9 ~~~~~~~~tl~~ll~~l----~~~~~~vav~~---N~~iv~---r~--~~~~~-L~~gD~ieIv 59 (65)
T PRK05863 9 QVEVDEQTTVAALLDSL----GFPEKGIAVAV---DWSVLP---RS--DWATK-LRDGARLEVV 59 (65)
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCcEEEEE---CCcCcC---hh--Hhhhh-cCCCCEEEEE
Confidence 56678889988876654 88888888887 555431 11 12234 8899998876
No 129
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=29.12 E-value=35 Score=23.58 Aligned_cols=46 Identities=20% Similarity=0.340 Sum_probs=23.0
Q ss_pred CCCCCCEEEEc-CCCceeEEEEecccCCC-CCccEEEEEEeCCCCccCcEE
Q 026104 158 NITVGDRCEVD-PGAKRGVVKYVGQAESI-APGFWVGIQYDEPLGKHNGIV 206 (243)
Q Consensus 158 ~~~vG~rv~v~-~~~~~G~vryvG~~~~~-~~g~w~GVelDep~GkndGs~ 206 (243)
.+..|+||++. +..++=||.-. ++. -.-.+=.|.-|+-+|+.+||+
T Consensus 5 pf~~GdrVQlTD~Kgr~~Ti~L~---~G~~fhThrG~i~HDdlIG~~eGsV 52 (54)
T PF14801_consen 5 PFRAGDRVQLTDPKGRKHTITLE---PGGEFHTHRGAIRHDDLIGRPEGSV 52 (54)
T ss_dssp S--TT-EEEEEETT--EEEEE-----TT-EEEETTEEEEHHHHTT--TTEE
T ss_pred CCCCCCEEEEccCCCCeeeEEEC---CCCeEEcCccccchhheecCCCcEE
Confidence 58899999996 33555555433 110 022445577888888888886
No 130
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=28.85 E-value=1.1e+02 Score=26.58 Aligned_cols=51 Identities=10% Similarity=0.075 Sum_probs=30.4
Q ss_pred ceEEEEEEeCCCCCc---eeEEEcCCCCCHHHHHHHHHhHhCCCC---CceEEEEEc
Q 026104 12 ESVLLRVTHSNLKSF---SADVRFPLQMSVESVKDKLWRKCGTSV---NSMSLELYD 62 (243)
Q Consensus 12 ~~v~v~It~s~~~~~---~~e~r~~~~~TV~~LK~KLe~~tGipp---~~qrL~l~~ 62 (243)
..|.|+--+...... +.-.++.++.|.+++|+||..++|++- +..++.+..
T Consensus 116 ~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~keF~K~Kfaiv~ 172 (213)
T PF14533_consen 116 KLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKEFEKWKFAIVQ 172 (213)
T ss_dssp EEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHHHTT-EEEEEE
T ss_pred eEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhhheeEEEEEEe
Confidence 445554434433322 455778899999999999999999997 556777754
No 131
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=28.78 E-value=1.5e+02 Score=22.85 Aligned_cols=71 Identities=11% Similarity=0.185 Sum_probs=52.6
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
-|+|.|.-... ..+-..+-++.|...|-.-.....|-.-+.-|+.+ +|+.+ +-+++-++++++++..|.++
T Consensus 24 hinLkvv~qd~--telfFkiKktT~f~klm~af~~rqGK~m~slRfL~---dG~rI----~~dqTP~dldmEdnd~iEav 94 (103)
T COG5227 24 HINLKVVDQDG--TELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLF---DGKRI----DLDQTPGDLDMEDNDEIEAV 94 (103)
T ss_pred ccceEEecCCC--CEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEE---cceec----CCCCChhhcCCccchHHHHH
Confidence 46777652222 23445667888888888888888999999999888 78764 55778889999998877655
No 132
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=28.71 E-value=24 Score=32.39 Aligned_cols=21 Identities=38% Similarity=0.705 Sum_probs=16.2
Q ss_pred ccCcEECC----------EEeeecCCCceee
Q 026104 201 KHNGIVKG----------VRYFECPPLHGAM 221 (243)
Q Consensus 201 kndGs~~G----------~rYF~c~~~~G~F 221 (243)
-|.||++| .||-.|+.|||+=
T Consensus 22 snSgS~KgSd~Sp~~rr~~rY~~C~dNHGik 52 (305)
T PF15290_consen 22 SNSGSCKGSDSSPTMRRSGRYMSCGDNHGIK 52 (305)
T ss_pred CCCccccCCCCCCCCCCCCceeecccCCCCC
Confidence 45566665 6899999999973
No 133
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=27.77 E-value=2.2e+02 Score=20.85 Aligned_cols=27 Identities=7% Similarity=0.051 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHhHhCCCCCceEEEE
Q 026104 34 LQMSVESVKDKLWRKCGTSVNSMSLEL 60 (243)
Q Consensus 34 ~~~TV~~LK~KLe~~tGipp~~qrL~l 60 (243)
...++.+|++.|+..+|++..+-.+.+
T Consensus 48 ~G~~i~~L~~~L~k~~~~~~~~i~v~~ 74 (81)
T cd02413 48 KGRRIRELTSLVQKRFNFPEGSVELYA 74 (81)
T ss_pred CchhHHHHHHHHHHHhCCCCCeEEEEE
Confidence 568899999999999999888877744
No 134
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=27.00 E-value=61 Score=25.52 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=26.7
Q ss_pred hhcCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEe
Q 026104 154 DLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYD 196 (243)
Q Consensus 154 ~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelD 196 (243)
+...++++|++|.-. ++..|+|.-++. -++-||+.
T Consensus 34 ~m~~~Lk~GD~VvT~-gGi~G~V~~I~d-------~~v~leia 68 (109)
T PRK05886 34 DLHESLQPGDRVHTT-SGLQATIVGITD-------DTVDLEIA 68 (109)
T ss_pred HHHHhcCCCCEEEEC-CCeEEEEEEEeC-------CEEEEEEC
Confidence 345679999999987 789999998852 35667664
No 135
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=26.77 E-value=2.2e+02 Score=19.63 Aligned_cols=53 Identities=8% Similarity=0.113 Sum_probs=34.3
Q ss_pred eEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 28 ADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
.++.++..+||.+|-+.| +.++....+.+ ++..+. ...-..+-+++|.+|-++
T Consensus 8 ~~~~~~~~~tl~~ll~~l----~~~~~~vaVav---N~~iv~-----r~~w~~~~L~~gD~Ieii 60 (66)
T PRK08053 8 QPMQCAAGQTVHELLEQL----NQLQPGAALAI---NQQIIP-----REQWAQHIVQDGDQILLF 60 (66)
T ss_pred eEEEcCCCCCHHHHHHHc----CCCCCcEEEEE---CCEEeC-----hHHcCccccCCCCEEEEE
Confidence 356778899999988654 55555566666 555431 122344557888888776
No 136
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=26.63 E-value=60 Score=25.70 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=22.1
Q ss_pred hhcCCCCCCCEEEEcCCCceeEEEEecc
Q 026104 154 DLCSNITVGDRCEVDPGAKRGVVKYVGQ 181 (243)
Q Consensus 154 ~~~~~~~vG~rv~v~~~~~~G~vryvG~ 181 (243)
+...++++|++|.-. |+..|+|.-++.
T Consensus 32 em~~sLk~GD~VvT~-GGi~G~V~~I~~ 58 (113)
T PRK06531 32 NQLNAIQKGDEVVTI-GGLYGTVDEVDT 58 (113)
T ss_pred HHHHhcCCCCEEEEC-CCcEEEEEEEec
Confidence 345679999999987 799999988853
No 137
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=26.56 E-value=2e+02 Score=20.45 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=18.8
Q ss_pred eEEEcCCC-CCHHHHHHHHHhHhC
Q 026104 28 ADVRFPLQ-MSVESVKDKLWRKCG 50 (243)
Q Consensus 28 ~e~r~~~~-~TV~~LK~KLe~~tG 50 (243)
.++.++.. .||.+|++.|....+
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p 41 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGP 41 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCc
Confidence 46778877 899999999988764
No 138
>smart00455 RBD Raf-like Ras-binding domain.
Probab=26.44 E-value=2.1e+02 Score=20.28 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=31.8
Q ss_pred ceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEE
Q 026104 26 FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELY 61 (243)
Q Consensus 26 ~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~ 61 (243)
+..-..+-|++||.++=+++-.+-|+.|+...|.+.
T Consensus 10 ~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~ 45 (70)
T smart00455 10 QRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLR 45 (70)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEc
Confidence 355667789999999999999999999999999885
No 139
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=26.39 E-value=1.3e+02 Score=21.71 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=37.4
Q ss_pred cCCCCCHHHHHHHHHhHhCCCC-CceEEEEEcCCCCeeeecCCCCCccCCC-CCCCCcEEEEee
Q 026104 32 FPLQMSVESVKDKLWRKCGTSV-NSMSLELYDDTNTKVAALTDNSRPLGFY-SPLQGYRLHVID 93 (243)
Q Consensus 32 ~~~~~TV~~LK~KLe~~tGipp-~~qrL~l~~~~g~~~~~l~~d~~~L~~y-~i~dg~~IhVvD 93 (243)
++++.+|.+|++-|....-+.. .+-.|.+ .|.. | ++-..|+++ ++++|+.|+|+-
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~---~g~~---L-~~~~el~~i~~~~~~~~L~lve 57 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEH---NGQR---L-DDFVELSEIEGIKDGCVLELVE 57 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEE---CCCc---c-CCchhhhhhhCCCCCcEEEEEe
Confidence 3678899999998887755333 4556666 5655 3 566666666 477788877774
No 140
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=26.35 E-value=63 Score=25.15 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=22.0
Q ss_pred hhcCCCCCCCEEEEcCCCceeEEEEecc
Q 026104 154 DLCSNITVGDRCEVDPGAKRGVVKYVGQ 181 (243)
Q Consensus 154 ~~~~~~~vG~rv~v~~~~~~G~vryvG~ 181 (243)
+....+++|++|... ++.+|+|.-+..
T Consensus 48 ~~~~~Lk~Gd~VvT~-gGi~G~Vv~i~~ 74 (106)
T PRK05585 48 KMLSSLAKGDEVVTN-GGIIGKVTKVSE 74 (106)
T ss_pred HHHHhcCCCCEEEEC-CCeEEEEEEEeC
Confidence 445679999999987 789999988743
No 141
>PF10016 DUF2259: Predicted secreted protein (DUF2259); InterPro: IPR018725 Members of this family of hypothetical bacterial proteins have no known function.
Probab=25.96 E-value=43 Score=28.93 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=21.5
Q ss_pred CCCCCCCC-----cEEEEeecCCCcccCCCcc
Q 026104 79 GFYSPLQG-----YRLHVIDLDPSSVTSGGWL 105 (243)
Q Consensus 79 ~~y~i~dg-----~~IhVvD~~p~s~~~~~~l 105 (243)
+.||++|| +.|.|+|++-+++...+-+
T Consensus 3 ~qyGvqDgSgfPyA~i~vvDv~~n~fv~~~~~ 34 (198)
T PF10016_consen 3 EQYGVQDGSGFPYAEIYVVDVATNRFVPGGPF 34 (198)
T ss_pred ceeeeecCCCCeeEEEEEEECCCCCCcCCceE
Confidence 56888887 4799999998888776555
No 142
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=25.69 E-value=2.7e+02 Score=20.37 Aligned_cols=51 Identities=22% Similarity=0.173 Sum_probs=38.0
Q ss_pred eeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccC
Q 026104 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLG 79 (243)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~ 79 (243)
..-..+-|.+||.++=.|+-++=|++++.-.+.+. +++....++.|...|.
T Consensus 11 ~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~--g~~k~l~~~qD~~~L~ 61 (73)
T cd01817 11 TTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLV--GGDKPLVLDQDSSVLA 61 (73)
T ss_pred eEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEe--cCCcccccCCccceee
Confidence 34455679999999999999999999999998886 3334334555655553
No 143
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=25.62 E-value=1.1e+02 Score=22.71 Aligned_cols=33 Identities=24% Similarity=0.239 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCee
Q 026104 35 QMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKV 68 (243)
Q Consensus 35 ~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~ 68 (243)
.-++.+|+.|--.+++++...-+|.|. .+|..+
T Consensus 20 A~sL~eL~~K~~~~l~~~~~~~~lvL~-eDGT~V 52 (78)
T PF02017_consen 20 ASSLEELLEKACDKLQLPEEPVRLVLE-EDGTEV 52 (78)
T ss_dssp ESSHHHHHHHHHHHHT-SSSTCEEEET-TTTCBE
T ss_pred cCCHHHHHHHHHHHhCCCCcCcEEEEe-CCCcEE
Confidence 478999999999999999988899885 577764
No 144
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=25.25 E-value=80 Score=23.49 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=17.7
Q ss_pred CCCCCCCEEEEcCC---CceeEEEEe
Q 026104 157 SNITVGDRCEVDPG---AKRGVVKYV 179 (243)
Q Consensus 157 ~~~~vG~rv~v~~~---~~~G~vryv 179 (243)
..+..||+|.|..| +..|+|..|
T Consensus 7 ~~I~~GD~V~Vi~G~dKGK~G~V~~V 32 (83)
T CHL00141 7 MHVKIGDTVKIISGSDKGKIGEVLKI 32 (83)
T ss_pred CcccCCCEEEEeEcCCCCcEEEEEEE
Confidence 36899999999644 567777776
No 145
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=25.05 E-value=77 Score=22.88 Aligned_cols=56 Identities=16% Similarity=0.264 Sum_probs=38.3
Q ss_pred EcCCCCCHHHHHHHHHhHh---CCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 31 RFPLQMSVESVKDKLWRKC---GTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 31 r~~~~~TV~~LK~KLe~~t---Gipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
.-.+...+--..+|--..+ |-|++.- +|+|.+|.. .+-++.+++||+..|..+.+.
T Consensus 11 EANvnaPLh~v~akALe~sgNvgQP~ENW--ElkDe~G~v----lD~~kKveD~GftngvkLFLs 69 (76)
T PF10790_consen 11 EANVNAPLHPVRAKALEQSGNVGQPPENW--ELKDESGQV----LDVNKKVEDFGFTNGVKLFLS 69 (76)
T ss_pred ecCCCCcchHHHHHHHhhccccCCCcccc--eeeccCCcE----eeccchhhhccccccceEEEE
Confidence 3345555555666654444 4555554 478888876 377899999999999887764
No 146
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=25.02 E-value=2.4e+02 Score=19.62 Aligned_cols=53 Identities=9% Similarity=0.125 Sum_probs=35.1
Q ss_pred EEEcCCC-CCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 29 DVRFPLQ-MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 29 e~r~~~~-~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++.++.. .||.+|-+. .|++++..-+.+ ++..+. ...-..+.+++|.+|.++-
T Consensus 9 ~~~~~~~~~tv~~lL~~----l~~~~~~vav~v---N~~iv~-----r~~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 9 QIEVPESVKTVAELLTH----LELDNKIVVVER---NKDILQ-----KDDHTDTSVFDGDQIEIVT 62 (67)
T ss_pred EEEcCCCcccHHHHHHH----cCCCCCeEEEEE---CCEEeC-----HHHcCceecCCCCEEEEEE
Confidence 4566666 688877654 477888777777 566542 2234556688999888763
No 147
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=24.45 E-value=30 Score=30.61 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=18.2
Q ss_pred ecCHHHHhcchhhHHHHHHHhhcCCCch
Q 026104 115 TISEEEYSKRDGTFRKFKEKVLSQNPSA 142 (243)
Q Consensus 115 ~msee~Y~~r~dtvr~~kk~~~~~~p~~ 142 (243)
-|+.|||++|+.++|. .+||+.
T Consensus 159 PmTkEEyearQSvIRr------VvDpET 180 (225)
T PF10500_consen 159 PMTKEEYEARQSVIRR------VVDPET 180 (225)
T ss_pred CCCHHHHHHHHhhhee------eecCCC
Confidence 5999999999988875 378874
No 148
>PF14001 YdfZ: YdfZ protein
Probab=24.20 E-value=93 Score=22.23 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=18.6
Q ss_pred CCCCCCEEEEcCCCceeEEEEe
Q 026104 158 NITVGDRCEVDPGAKRGVVKYV 179 (243)
Q Consensus 158 ~~~vG~rv~v~~~~~~G~vryv 179 (243)
.|..|+||++...+..|+|+-|
T Consensus 9 ~i~~G~rVMiagtG~~gvikAi 30 (64)
T PF14001_consen 9 AITTGSRVMIAGTGATGVIKAI 30 (64)
T ss_pred cCCCCCEEEEcCCCcccEEeee
Confidence 5889999999755788888877
No 149
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=24.04 E-value=1.8e+02 Score=20.93 Aligned_cols=37 Identities=24% Similarity=0.141 Sum_probs=32.1
Q ss_pred eeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcC
Q 026104 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDD 63 (243)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~ 63 (243)
..-..+-|++||.++=+++-.+-|+.|+.=.|.+...
T Consensus 11 ~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~ 47 (72)
T cd01760 11 RTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGL 47 (72)
T ss_pred eEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecC
Confidence 4556678999999999999999999999999988743
No 150
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=23.65 E-value=90 Score=22.83 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=17.9
Q ss_pred CCCCCCCEEEEcCC---CceeEEEEe
Q 026104 157 SNITVGDRCEVDPG---AKRGVVKYV 179 (243)
Q Consensus 157 ~~~~vG~rv~v~~~---~~~G~vryv 179 (243)
..|..||+|.|..| +..|+|..+
T Consensus 5 ~~I~kGD~V~Vi~G~dKGK~G~V~~V 30 (76)
T PRK12281 5 LKVKKGDMVKVIAGDDKGKTGKVLAV 30 (76)
T ss_pred ccccCCCEEEEeEcCCCCcEEEEEEE
Confidence 36899999999644 567777777
No 151
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=23.26 E-value=1e+02 Score=30.50 Aligned_cols=21 Identities=10% Similarity=0.079 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHHHhHhCCCCC
Q 026104 34 LQMSVESVKDKLWRKCGTSVN 54 (243)
Q Consensus 34 ~~~TV~~LK~KLe~~tGipp~ 54 (243)
|-+||++||++-+.++|.|..
T Consensus 445 ~~~~i~~l~~~a~~~~g~p~~ 465 (492)
T TIGR01584 445 PLYTIEELQEIAEEITGKPEP 465 (492)
T ss_pred CcccHHHHHHHHHHhhCCCCC
Confidence 678999999999999999865
No 152
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=22.78 E-value=59 Score=20.37 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=10.9
Q ss_pred CCCCCHHHHHHHHHhH
Q 026104 33 PLQMSVESVKDKLWRK 48 (243)
Q Consensus 33 ~~~~TV~~LK~KLe~~ 48 (243)
+.++||.+||..|..+
T Consensus 1 p~sltV~~Lk~iL~~~ 16 (35)
T PF12949_consen 1 PKSLTVAQLKRILDEH 16 (35)
T ss_dssp STT--SHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHc
Confidence 3578999999888764
No 153
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.62 E-value=79 Score=25.11 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=31.5
Q ss_pred cCC-CCCHHHH----HHHHHhHhCCCC------CceEEEEEcCCC---Ceee--------ecCCCCCccCCCCCCCCcEE
Q 026104 32 FPL-QMSVESV----KDKLWRKCGTSV------NSMSLELYDDTN---TKVA--------ALTDNSRPLGFYSPLQGYRL 89 (243)
Q Consensus 32 ~~~-~~TV~~L----K~KLe~~tGipp------~~qrL~l~~~~g---~~~~--------~l~~d~~~L~~y~i~dg~~I 89 (243)
++. +.|+.++ |++|...+..|| +..++....... ..+. .|.+++++|..|||++..+|
T Consensus 29 ~dLad~Tvk~f~~~~~~~Iq~~~sl~pfRn~kfDtLKIy~~Ah~sKT~nLvinldhDd~w~L~d~~ktL~~~GIenETEi 108 (127)
T KOG4147|consen 29 VDLADQTVKEFIVFLKQDIQLRTSLPPFRNYKFDTLKIYHQAHKSKTNNLVINLDHDDRWLLKDEDKTLKAAGIENETEI 108 (127)
T ss_pred cchhHhhHHHHHHHHHHhcccCCCCCccccccccceeeehhhhhcccceEEEeccCCcceeecCccchHHHhccCcchhh
Confidence 455 6787775 456666666666 222222211111 1111 14556788888988776554
No 154
>COG5466 Predicted small metal-binding protein [Function unknown]
Probab=22.47 E-value=66 Score=22.62 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=14.3
Q ss_pred CCEEeeec---CCCceeeecCC
Q 026104 207 KGVRYFEC---PPLHGAMVRPD 225 (243)
Q Consensus 207 ~G~rYF~c---~~~~G~Fv~~~ 225 (243)
.+++||.| ++++|--++.+
T Consensus 1 ~~m~~f~C~slg~~C~f~~~a~ 22 (59)
T COG5466 1 MAMYLFKCGSLGMGCGFEARAD 22 (59)
T ss_pred CCceEEEccccCCCCcceeccC
Confidence 36899999 68888766644
No 155
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=22.22 E-value=2e+02 Score=21.10 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCee
Q 026104 34 LQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKV 68 (243)
Q Consensus 34 ~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~ 68 (243)
..-++.+|+.|.-..++++.+.-+|.|. .+|..+
T Consensus 17 ~A~sL~eL~~K~~~~l~l~~~~~~l~L~-eDGT~V 50 (74)
T smart00266 17 AASSLEELLSKVCDKLALPDSPVTLVLE-EDGTIV 50 (74)
T ss_pred EcCCHHHHHHHHHHHhCCCCCCcEEEEe-cCCcEE
Confidence 4678999999999999999888888885 367664
No 156
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=22.04 E-value=2e+02 Score=21.32 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCee
Q 026104 34 LQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKV 68 (243)
Q Consensus 34 ~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~ 68 (243)
..-++.+|+.|.-..++++...-+|.|. .+|..+
T Consensus 19 ~A~sL~eL~~K~~~~l~l~~~~~~lvL~-eDGTeV 52 (78)
T cd01615 19 AASSLEELLSKACEKLKLPSAPVTLVLE-EDGTEV 52 (78)
T ss_pred EcCCHHHHHHHHHHHcCCCCCCeEEEEe-CCCcEE
Confidence 4678999999999999999777788885 367664
No 157
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=21.77 E-value=2e+02 Score=25.46 Aligned_cols=84 Identities=11% Similarity=0.080 Sum_probs=50.4
Q ss_pred CceEEEEEEeCCCCCc----eeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCC
Q 026104 11 DESVLLRVTHSNLKSF----SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG 86 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~----~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg 86 (243)
...|-||+++=+.... .-..-++.+.+|++|-..|-..-|.|++..-+.+..-.-..+..+ +...++...-+++|
T Consensus 66 ~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i-~~~~t~~~~el~~G 144 (249)
T PF12436_consen 66 SDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPI-DPNQTFEKAELQDG 144 (249)
T ss_dssp TTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE---SSSBHHHTT--TT
T ss_pred CCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEc-CCCCchhhcccCCC
Confidence 4468888875443322 123447899999999999999999988766555432111233334 77889999999999
Q ss_pred cEEEEeecC
Q 026104 87 YRLHVIDLD 95 (243)
Q Consensus 87 ~~IhVvD~~ 95 (243)
..|-+.-..
T Consensus 145 dIi~fQ~~~ 153 (249)
T PF12436_consen 145 DIICFQRAP 153 (249)
T ss_dssp EEEEEEE--
T ss_pred CEEEEEecc
Confidence 988777644
No 158
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=20.77 E-value=2.3e+02 Score=21.07 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCee
Q 026104 34 LQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKV 68 (243)
Q Consensus 34 ~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~ 68 (243)
..-++.+|+.|.-..++++...-+|.|+ .+|..+
T Consensus 19 ~A~sL~EL~~K~~~~l~~~~~~~~lvL~-eDGT~V 52 (78)
T cd06539 19 MASSLQELISKTLDALVITSGLVTLVLE-EDGTVV 52 (78)
T ss_pred EecCHHHHHHHHHHHhCCCCCCcEEEEe-CCCCEE
Confidence 3578999999999999999888888886 467764
No 159
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=20.49 E-value=2.3e+02 Score=22.68 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=32.2
Q ss_pred CCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCCCC
Q 026104 157 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYP 233 (243)
Q Consensus 157 ~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f~ 233 (243)
..+.|||-|.|.++.-..+-.+ +.-.. ...+.+-|+.-.... +|.++|.+ --|.||..-..|.|+
T Consensus 4 ~~i~vGD~V~v~~d~~~~~~~~-~~~~~-~~~~i~~V~~~~e~~------~g~~~~h~----~W~yrp~eTv~g~~~ 68 (130)
T cd04712 4 LTIRVGDVVSVERDDADSTTKW-NDDHR-WLPLVQFVEYMKKGS------DGSKMFHG----RWLYRGCDTVLGNYA 68 (130)
T ss_pred CEEeCCCEEEEcCCCCCccccc-ccccc-ccceEEEEEEeeecC------CCceEEEE----EEEEcchhccccccC
Confidence 3588999999974422211111 11111 133344444432211 45566665 556666666666654
No 160
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=20.34 E-value=2e+02 Score=21.48 Aligned_cols=36 Identities=11% Similarity=0.167 Sum_probs=32.2
Q ss_pred eeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEc
Q 026104 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYD 62 (243)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~ 62 (243)
....++++++|=.|+|+=|+.++|+++...+-..+.
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~ 57 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYP 57 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEET
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeC
Confidence 467889999999999999999999999998877763
No 161
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=20.08 E-value=3.3e+02 Score=19.34 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=35.4
Q ss_pred eeEEEcCCCCCHHHHHHHHHhHhCCCC--CceEEEEEcCCCCeeeecCCCCCccC
Q 026104 27 SADVRFPLQMSVESVKDKLWRKCGTSV--NSMSLELYDDTNTKVAALTDNSRPLG 79 (243)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGipp--~~qrL~l~~~~g~~~~~l~~d~~~L~ 79 (243)
...++++.+.|..++-..+..++|+.- ++=.|.-.-.++...-.|.++..+|.
T Consensus 14 ~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl~ 68 (87)
T cd01768 14 YKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPLQ 68 (87)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChHH
Confidence 577899999999999999999999993 33344433333212223556666554
Done!