Query 026104
Match_columns 243
No_of_seqs 215 out of 1080
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 05:42:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026104.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026104hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t0y_A Tubulin folding cofacto 100.0 1.5E-35 5.2E-40 235.6 12.7 119 11-134 4-122 (122)
2 4b6m_A Tubulin-specific chaper 100.0 5.6E-35 1.9E-39 217.6 9.4 81 156-236 3-83 (84)
3 1lpl_A Hypothetical 25.4 kDa p 100.0 1.2E-34 4.2E-39 221.2 9.8 83 153-236 6-91 (95)
4 1whg_A Tubulin specific chaper 100.0 1.3E-34 4.4E-39 227.2 8.9 99 137-236 6-112 (113)
5 2e3h_A Restin; CAP-Gly, cytopl 100.0 2.7E-31 9.2E-36 200.7 8.9 79 158-238 1-79 (90)
6 1whh_A Clipr-59; microtubule b 100.0 5.4E-30 1.9E-34 197.4 8.6 78 155-234 22-100 (102)
7 2cp6_A Restin; microtubule bin 100.0 1.2E-29 4.1E-34 210.8 9.8 81 156-238 36-116 (172)
8 3rdv_A CAP-Gly domain-containi 100.0 1.4E-29 4.7E-34 184.0 8.4 69 158-228 2-70 (72)
9 2e3i_A Restin; CAP-Gly, cytopl 100.0 2.6E-29 8.8E-34 188.4 8.8 75 158-234 2-77 (86)
10 1txq_A Dynactin 1; protein com 100.0 4E-29 1.4E-33 190.0 9.0 75 155-230 9-83 (93)
11 2cp2_A CLIP-115, KIAA0291; mic 100.0 3.8E-29 1.3E-33 190.6 8.5 76 154-231 14-89 (95)
12 2coz_A CAP350, centrosome-asso 100.0 6.3E-29 2.2E-33 196.9 9.5 77 154-234 27-103 (122)
13 2cp3_A CLIP-115, KIAA0291; mic 100.0 1E-28 3.4E-33 184.4 8.8 76 156-233 5-80 (84)
14 1whk_A 1700024K14RIK, riken cD 100.0 5.3E-29 1.8E-33 188.5 7.2 77 156-233 10-86 (91)
15 2z0w_A CAP-Gly domain-containi 100.0 5.9E-29 2E-33 189.9 7.0 75 156-232 8-83 (96)
16 1whl_A Cylindromatosis tumor s 100.0 1.3E-28 4.5E-33 187.9 8.6 78 156-234 5-93 (95)
17 1ixd_A Cylindromatosis tumour- 100.0 2E-28 6.9E-33 189.4 9.6 81 156-237 15-98 (104)
18 2coy_A Dynactin-1; microtubule 100.0 1.9E-28 6.4E-33 191.7 9.3 75 156-231 31-105 (112)
19 2cp0_A Clipr-59 protein, clipr 100.0 1.1E-28 3.8E-33 188.0 7.8 73 156-230 14-86 (95)
20 1whj_A 1700024K14RIK, riken cD 99.9 1.9E-28 6.6E-33 188.7 8.2 77 156-234 22-99 (102)
21 2cow_A Kinesin-like protein KI 99.9 5E-28 1.7E-32 185.8 8.2 77 155-233 20-97 (100)
22 2cp5_A Restin; microtubule bin 99.9 5.8E-28 2E-32 195.3 8.9 75 154-230 60-134 (141)
23 1whm_A Cylindromatosis tumor s 99.9 7.2E-28 2.5E-32 181.3 8.1 73 155-227 6-82 (92)
24 4b6w_A Tubulin-specific chaper 99.9 2.8E-26 9.6E-31 172.0 10.6 86 12-97 1-86 (86)
25 2kj6_A Tubulin folding cofacto 99.9 2.8E-23 9.7E-28 159.0 10.0 90 7-96 8-97 (97)
26 1v6e_A Cytoskeleton-associated 99.8 1.6E-20 5.3E-25 142.4 11.8 90 11-101 5-94 (95)
27 2kjr_A CG11242; UBL, ubiquitin 99.8 9.8E-21 3.4E-25 144.2 10.2 86 7-93 9-94 (95)
28 1wjn_A Tubulin-folding protein 99.8 1.6E-20 5.6E-25 142.7 11.4 91 8-98 4-96 (97)
29 3plu_A Ubiquitin-like modifier 99.5 1.9E-14 6.5E-19 108.9 9.2 80 4-92 12-91 (93)
30 2bwf_A Ubiquitin-like protein 99.5 1.2E-13 4.3E-18 98.9 9.6 74 12-95 3-76 (77)
31 1wxv_A BAG-family molecular ch 99.5 8.3E-14 2.8E-18 104.1 8.8 79 9-96 3-86 (92)
32 2wyq_A HHR23A, UV excision rep 99.5 1.6E-13 5.6E-18 100.4 9.1 77 12-97 4-83 (85)
33 3phx_B Ubiquitin-like protein 99.5 2.1E-13 7.2E-18 98.7 9.5 72 12-92 3-74 (79)
34 1v5o_A 1700011N24RIK protein; 99.4 2.9E-13 9.9E-18 103.5 9.2 80 11-96 5-86 (102)
35 2kk8_A Uncharacterized protein 99.4 1.4E-13 4.9E-18 101.8 7.0 73 12-92 9-81 (84)
36 3m63_B Ubiquitin domain-contai 99.4 1.3E-13 4.6E-18 105.5 6.6 78 9-96 24-101 (101)
37 3v6c_B Ubiquitin; structural g 99.4 5.5E-13 1.9E-17 99.4 9.8 76 8-92 12-87 (91)
38 1uel_A HHR23B, UV excision rep 99.4 6.2E-13 2.1E-17 100.2 10.1 78 14-100 1-81 (95)
39 3dbh_I NEDD8; cell cycle, acti 99.4 6.5E-13 2.2E-17 97.6 9.4 76 9-93 8-83 (88)
40 2kan_A Uncharacterized protein 99.4 5.5E-13 1.9E-17 100.7 9.0 78 8-95 10-88 (94)
41 1wh3_A 59 kDa 2'-5'-oligoadeny 99.4 4.4E-13 1.5E-17 98.6 8.0 77 8-93 2-78 (87)
42 1v86_A DNA segment, CHR 7, way 99.4 1.8E-13 6E-18 103.5 6.0 77 8-95 12-88 (95)
43 2dzi_A Ubiquitin-like protein 99.4 5.9E-13 2E-17 96.2 8.5 76 9-93 3-78 (81)
44 2klc_A Ubiquilin-1; ubiquitin- 99.4 1.1E-12 3.7E-17 100.2 10.4 79 8-96 20-98 (101)
45 1uh6_A Ubiquitin-like 5; beta- 99.4 4.2E-13 1.4E-17 102.9 7.8 75 9-92 24-98 (100)
46 2faz_A Ubiquitin-like containi 99.4 1E-12 3.5E-17 94.7 9.3 72 13-93 2-75 (78)
47 4dwf_A HLA-B-associated transc 99.4 1.1E-12 3.7E-17 97.3 9.6 78 11-98 3-80 (90)
48 4a20_A Ubiquitin-like protein 99.4 1.2E-12 4E-17 100.1 9.7 81 9-96 15-97 (98)
49 4fbj_B NEDD8; effector-HOST ta 99.4 9.4E-13 3.2E-17 97.8 8.7 71 14-93 1-71 (88)
50 4eew_A Large proline-rich prot 99.4 9.9E-13 3.4E-17 97.1 8.7 72 11-92 15-86 (88)
51 1we7_A SF3A1 protein; structur 99.4 7.5E-13 2.6E-17 103.2 8.2 77 10-93 22-106 (115)
52 2hj8_A Interferon-induced 17 k 99.4 4.5E-13 1.5E-17 99.5 6.4 76 11-95 2-77 (88)
53 1ndd_A NEDD8, protein (ubiquit 99.4 1.5E-12 5.2E-17 92.6 8.9 71 14-93 1-71 (76)
54 1wju_A NEDD8 ultimate buster-1 99.4 1.6E-12 5.5E-17 99.7 9.5 81 11-98 13-95 (100)
55 3m62_B UV excision repair prot 99.4 1.3E-12 4.5E-17 100.6 8.5 76 13-97 1-76 (106)
56 3mtn_B UBA80, ubcep1, ubiquiti 99.4 2.3E-12 7.8E-17 93.8 9.3 73 12-93 2-74 (85)
57 3n3k_B Ubiquitin; hydrolase, p 99.4 1.6E-12 5.5E-17 94.8 8.4 72 13-93 3-74 (85)
58 2l7r_A Ubiquitin-like protein 99.4 7.5E-13 2.6E-17 99.5 6.8 78 4-92 10-87 (93)
59 1ttn_A DC-UBP, dendritic cell- 99.4 1.1E-12 3.8E-17 100.8 7.8 79 10-97 20-98 (106)
60 4hcn_B Polyubiquitin, ubiquiti 99.4 1.4E-12 4.8E-17 98.8 8.2 76 9-93 18-93 (98)
61 1wy8_A NP95-like ring finger p 99.4 1.7E-12 6E-17 95.9 8.0 76 9-93 3-80 (89)
62 1wx8_A Riken cDNA 4931431F19; 99.4 1.7E-12 5.8E-17 97.5 7.9 76 10-95 14-89 (96)
63 3a9j_A Ubiquitin; protein comp 99.3 3E-12 1E-16 91.0 8.4 71 14-93 1-71 (76)
64 3vdz_A Ubiquitin-40S ribosomal 99.3 5E-12 1.7E-16 98.1 10.3 73 12-93 34-106 (111)
65 1wgd_A Homocysteine-responsive 99.3 2.2E-12 7.6E-17 96.6 8.0 77 11-94 5-85 (93)
66 1we6_A Splicing factor, putati 99.3 3.6E-12 1.2E-16 98.7 9.4 76 11-93 25-102 (111)
67 1j8c_A Ubiquitin-like protein 99.3 7.3E-12 2.5E-16 99.4 11.2 75 11-95 30-104 (125)
68 2kd0_A LRR repeats and ubiquit 99.3 6E-12 2E-16 93.1 10.0 74 11-94 10-83 (85)
69 1wf9_A NPL4 family protein; be 99.3 1.8E-12 6.2E-17 100.0 7.3 78 13-96 7-96 (107)
70 3u30_A Ubiquitin, linear DI-ub 99.3 6.4E-12 2.2E-16 103.9 11.1 111 9-136 16-127 (172)
71 4dbg_A Ranbp-type and C3HC4-ty 99.3 4E-12 1.4E-16 98.3 8.9 77 12-95 21-100 (105)
72 1wia_A Hypothetical ubiquitin- 99.3 6.1E-12 2.1E-16 94.4 9.6 79 10-99 4-82 (95)
73 2lxa_A Ubiquitin-like protein 99.3 1.3E-12 4.3E-17 97.8 5.7 75 13-94 1-77 (87)
74 1sif_A Ubiquitin; hydrophobic 99.3 4.1E-12 1.4E-16 94.3 8.3 71 14-93 10-80 (88)
75 3k9o_B Ubiquitin, UBB+1; E2-25 99.3 4.2E-12 1.4E-16 95.1 8.4 71 14-93 2-72 (96)
76 2ojr_A Ubiquitin; lanthide-bin 99.3 1.3E-11 4.6E-16 95.5 11.1 75 10-93 32-106 (111)
77 1yqb_A Ubiquilin 3; structural 99.3 4.8E-12 1.7E-16 96.5 8.4 78 8-95 17-94 (100)
78 3b08_A Polyubiquitin-C, ubiqui 99.3 1.1E-11 3.9E-16 99.2 10.5 105 14-135 1-106 (152)
79 2kdb_A Homocysteine-responsive 99.3 4E-12 1.4E-16 97.2 7.0 77 9-92 19-99 (99)
80 1wx7_A Ubiquilin 3; ubiquitin- 99.3 8.3E-12 2.8E-16 95.8 8.5 75 11-95 15-89 (106)
81 2uyz_B Small ubiquitin-related 99.3 7.5E-12 2.5E-16 90.4 7.5 72 13-93 3-74 (79)
82 1wgg_A Ubiquitin carboxyl-term 99.3 8.9E-12 3E-16 94.4 8.2 76 9-95 3-79 (96)
83 1yx5_B Ubiquitin; proteasome, 99.3 1.3E-11 4.4E-16 93.1 9.0 74 14-96 1-74 (98)
84 1x1m_A Ubiquitin-like protein 99.3 9.6E-12 3.3E-16 95.8 8.2 82 8-96 7-101 (107)
85 3rt3_B Ubiquitin-like protein 99.3 2.6E-11 8.9E-16 98.7 11.1 108 14-136 3-112 (159)
86 1wyw_B Ubiquitin-like protein 99.3 1E-11 3.6E-16 93.9 7.7 75 10-93 18-92 (97)
87 4ajy_B Transcription elongatio 99.3 2.3E-11 8E-16 95.7 9.8 60 27-93 13-79 (118)
88 1v2y_A 3300001G02RIK protein; 99.3 5.1E-12 1.7E-16 97.7 5.8 75 12-94 6-95 (105)
89 2kdi_A Ubiquitin, vacuolar pro 99.3 2.6E-11 8.7E-16 94.6 9.7 74 14-96 10-83 (114)
90 1v5t_A 8430435I17RIK protein; 99.2 8.7E-12 3E-16 93.1 6.2 76 10-95 4-83 (90)
91 3b1l_X E3 ubiquitin-protein li 98.9 7.8E-13 2.7E-17 94.7 0.0 70 14-92 1-70 (76)
92 3l0w_B Monoubiquitinated proli 99.2 3.2E-11 1.1E-15 100.3 8.8 72 14-94 1-72 (169)
93 3rt3_B Ubiquitin-like protein 99.2 5.1E-11 1.8E-15 96.9 9.8 74 11-93 79-152 (159)
94 2dzj_A Synaptic glycoprotein S 99.2 3.5E-11 1.2E-15 89.8 7.7 77 13-94 10-88 (88)
95 2fnj_B Transcription elongatio 99.2 3.2E-11 1.1E-15 95.0 6.9 71 13-93 2-79 (118)
96 3q3f_A Ribonuclease/ubiquitin 99.2 5.6E-11 1.9E-15 100.8 8.5 71 14-93 106-176 (189)
97 2daf_A FLJ35834 protein; hypot 99.2 8.3E-11 2.8E-15 92.4 8.8 84 4-95 6-89 (118)
98 3u30_A Ubiquitin, linear DI-ub 99.2 6E-11 2E-15 98.0 8.1 72 13-93 96-167 (172)
99 1wgh_A Ubiquitin-like 3, HCG-1 99.2 1.9E-10 6.5E-15 90.4 10.0 75 10-93 13-97 (116)
100 1se9_A Ubiquitin family; ubiqu 99.1 1.4E-10 4.8E-15 92.3 8.5 79 6-93 9-101 (126)
101 2dzm_A FAS-associated factor 1 99.1 8.8E-11 3E-15 89.9 6.9 71 13-92 9-79 (100)
102 3u5e_m 60S ribosomal protein L 99.1 5.2E-12 1.8E-16 100.3 0.0 72 14-94 1-72 (128)
103 3b08_A Polyubiquitin-C, ubiqui 99.1 2.5E-10 8.5E-15 91.3 8.9 71 14-93 77-147 (152)
104 2gow_A HCG-1 protein, ubiquiti 99.1 2E-10 6.8E-15 91.3 8.1 78 8-94 12-99 (125)
105 3ai5_A Yeast enhanced green fl 99.1 2.6E-10 9E-15 103.2 9.6 75 9-92 229-303 (307)
106 3u5c_f 40S ribosomal protein S 99.1 1.6E-11 5.5E-16 100.7 0.0 71 14-93 1-71 (152)
107 2kzr_A Ubiquitin thioesterase 99.0 4.6E-10 1.6E-14 82.9 7.5 78 14-96 1-79 (86)
108 3shq_A UBLCP1; phosphatase, hy 99.0 1E-09 3.4E-14 99.9 9.1 76 11-96 3-81 (320)
109 1oqy_A HHR23A, UV excision rep 98.8 3.9E-09 1.3E-13 97.7 6.6 75 10-93 4-82 (368)
110 2io1_B Small ubiquitin-related 98.8 2.5E-08 8.6E-13 75.2 9.4 76 10-94 4-79 (94)
111 1wm3_A Ubiquitin-like protein 98.7 1.2E-07 4E-12 67.8 9.8 70 14-92 2-71 (72)
112 2io0_B Small ubiquitin-related 98.7 1.3E-07 4.4E-12 71.0 9.7 76 10-94 2-77 (91)
113 3a4r_A Nfatc2-interacting prot 98.7 1.2E-07 4.3E-12 69.0 8.8 75 9-92 3-78 (79)
114 2xzm_9 RPS31E; ribosome, trans 98.6 3.1E-09 1.1E-13 89.9 0.0 66 14-93 1-66 (189)
115 2d07_B Ubiquitin-like protein 98.6 4.3E-07 1.5E-11 68.2 10.1 74 11-93 15-88 (93)
116 1wz0_A Ubiquitin-like protein 98.5 6E-07 2.1E-11 68.9 9.2 74 11-93 22-95 (104)
117 2eke_C Ubiquitin-like protein 98.4 1.9E-06 6.4E-11 66.5 9.6 73 11-93 29-101 (106)
118 2k8h_A Small ubiquitin protein 98.3 6.8E-07 2.3E-11 69.4 5.8 74 12-94 25-98 (110)
119 3kyd_D Small ubiquitin-related 97.9 0.0001 3.5E-09 57.5 9.9 73 12-93 39-111 (115)
120 4efo_A Serine/threonine-protei 97.8 5.3E-05 1.8E-09 57.1 6.9 62 15-82 14-75 (94)
121 3pge_A SUMO-modified prolifera 97.7 0.00022 7.4E-09 60.7 9.8 74 11-94 27-100 (200)
122 3tix_A Ubiquitin-like protein 97.5 0.00042 1.4E-08 58.7 8.4 74 11-94 55-128 (207)
123 2pjh_A Protein NPL4, nuclear p 97.5 4.9E-05 1.7E-09 55.3 2.3 74 14-92 5-78 (80)
124 2bps_A YUKD protein; ubiquitin 96.8 0.0024 8.2E-08 46.7 5.5 75 12-91 3-80 (81)
125 3jyu_A Ubiquitin carboxyl-term 96.7 0.0068 2.3E-07 52.2 9.3 68 27-95 153-221 (231)
126 3goe_A DNA repair protein RAD6 96.5 0.026 9E-07 41.0 9.4 71 13-92 9-80 (82)
127 3v7o_A Minor nucleoprotein VP3 96.4 0.00048 1.6E-08 59.1 0.0 72 12-93 20-91 (227)
128 3uf8_A Ubiquitin-like protein 96.3 0.019 6.6E-07 48.6 9.4 76 9-94 17-92 (209)
129 4a3p_A Ubiquitin carboxyl-term 96.3 0.012 4.1E-07 50.1 8.0 68 27-95 141-209 (217)
130 3qx1_A FAS-associated factor 1 95.9 0.084 2.9E-06 38.0 9.9 80 9-93 3-82 (84)
131 2r2o_A Plexin-B1; effector dom 95.8 0.051 1.8E-06 43.4 8.8 84 11-94 22-128 (138)
132 1vd2_A Protein kinase C, IOTA 95.8 0.021 7.1E-07 42.4 6.0 78 11-92 4-87 (89)
133 2jxx_A Nfatc2-interacting prot 95.6 0.063 2.2E-06 40.3 8.4 75 10-92 22-96 (97)
134 1oey_A P67-PHOX, neutrophil cy 95.5 0.039 1.3E-06 40.4 6.7 41 26-66 14-54 (83)
135 3ix6_A TS, tsase, thymidylate 95.1 0.0036 1.2E-07 57.5 0.0 75 10-94 18-92 (360)
136 3h6n_A Plexin-D1; structural g 95.1 0.15 5.1E-06 40.1 9.1 66 27-93 18-103 (127)
137 4e71_A Plexin-B2, MM1; transme 95.0 0.097 3.3E-06 40.3 7.7 79 12-92 10-108 (111)
138 1wj4_A KIAA0794 protein; UBX d 94.3 0.4 1.4E-05 37.2 10.0 84 10-98 40-123 (124)
139 1q1o_A Cell division control p 94.2 0.079 2.7E-06 39.9 5.4 57 13-69 5-71 (98)
140 4e74_A Plexin-A4; RBD, structu 94.0 0.27 9.3E-06 38.1 8.3 81 12-93 12-113 (117)
141 4da1_A Protein phosphatase 1K, 94.0 0.0095 3.2E-07 54.7 0.0 75 10-94 27-101 (389)
142 3kuz_A Plexin-C1; structural g 93.6 0.61 2.1E-05 36.5 9.7 65 27-92 40-124 (126)
143 2dzk_A UBX domain-containing p 93.4 0.81 2.8E-05 34.6 10.0 81 11-95 11-91 (109)
144 1pqs_A Cell division control p 93.1 0.072 2.5E-06 38.4 3.4 42 28-69 4-50 (77)
145 2kc2_A Talin-1, F1; FERM, adhe 92.2 0.19 6.5E-06 39.6 5.0 38 15-54 13-50 (128)
146 2cr5_A Reproduction 8; UBX dom 91.3 0.83 2.8E-05 34.4 7.6 81 11-97 21-101 (109)
147 2kvr_A Ubiquitin carboxyl-term 91.0 0.25 8.5E-06 38.8 4.5 35 28-62 58-92 (130)
148 2l76_A Nfatc2-interacting prot 89.1 3.5 0.00012 30.7 9.2 75 10-94 18-92 (95)
149 3hm6_X Plexin-B1; structural g 88.5 2.9 9.8E-05 40.9 10.5 82 11-93 255-360 (644)
150 3ivf_A Talin-1; FERM domain, c 88.4 1.2 4.1E-05 40.1 7.6 64 27-91 14-81 (371)
151 3ig3_A Plxna3 protein; plexin 87.9 4.3 0.00015 39.6 11.4 82 11-93 231-333 (627)
152 2al3_A TUG long isoform; TUG U 81.4 5 0.00017 29.5 6.7 73 14-95 10-82 (90)
153 2daj_A KIAA0977 protein, COBL- 78.4 7.2 0.00024 28.6 6.6 81 7-96 4-84 (91)
154 2ylm_A Ubiquitin carboxyl-term 77.7 1.9 6.4E-05 41.2 4.3 36 28-63 38-73 (530)
155 1ip9_A BEM1 protein; ubiquitin 77.6 8.6 0.0003 28.0 6.8 45 12-61 11-55 (85)
156 1s3s_G P47 protein; AAA ATPase 74.0 5.8 0.0002 30.6 5.5 73 12-90 51-124 (127)
157 1ryj_A Unknown; beta/alpha pro 73.8 17 0.00059 24.6 7.4 60 14-92 5-64 (70)
158 2bkf_A Zinc-finger protein NBR 72.7 24 0.00081 25.7 8.1 55 10-69 3-59 (87)
159 3onh_A Ubiquitin-activating en 68.9 14 0.00046 28.9 6.5 58 35-95 19-80 (127)
160 4eut_A Serine/threonine-protei 66.4 35 0.0012 30.0 9.7 35 26-60 322-356 (396)
161 1y8x_B Ubiquitin-activating en 63.4 0.63 2.1E-05 34.9 -2.1 68 28-95 7-85 (98)
162 1wj6_A KIAA0049 protein, RSGI 61.4 32 0.0011 25.7 7.0 55 10-69 11-67 (101)
163 3qa8_A MGC80376 protein; kinas 60.7 6.7 0.00023 38.6 4.1 36 26-61 322-357 (676)
164 1tyg_B YJBS; alpha beta barrel 60.0 23 0.00077 25.5 5.9 52 29-92 29-81 (87)
165 2ylm_A Ubiquitin carboxyl-term 56.1 29 0.00098 33.0 7.6 77 13-92 339-419 (530)
166 2ktr_A Sequestosome-1; autopha 55.1 9 0.00031 29.5 3.2 34 36-69 57-91 (117)
167 1f0z_A THis protein; ubiquitin 55.1 22 0.00077 23.6 4.9 52 29-92 9-60 (66)
168 2kkc_A Sequestosome-1; P62, PB 51.2 9.4 0.00032 28.6 2.6 34 36-69 42-76 (102)
169 2cu3_A Unknown function protei 50.8 43 0.0015 22.0 5.8 51 29-92 8-58 (64)
170 1wmh_B Partitioning defective- 43.7 71 0.0024 23.0 6.3 36 34-69 26-61 (86)
171 2c7h_A RBBP6, retinoblastoma-b 43.6 30 0.001 25.1 4.2 40 27-66 19-59 (86)
172 2l32_A Small archaeal modifier 39.6 90 0.0031 21.4 6.2 50 27-93 12-61 (74)
173 2kl0_A Putative thiamin biosyn 36.1 60 0.0021 22.2 4.8 52 29-93 9-60 (73)
174 2hj1_A Hypothetical protein; s 34.2 98 0.0033 22.6 5.9 70 12-93 11-84 (97)
175 2kmc_A Fermitin family homolog 32.0 1.6E+02 0.0054 21.9 8.5 76 13-92 19-97 (102)
176 2kss_A Carotenogenesis protein 29.7 8.6 0.0003 28.0 -0.6 38 157-199 36-75 (106)
177 2v1y_A Phosphatidylinositol-4, 28.3 1.9E+02 0.0064 21.6 8.9 79 10-93 16-103 (108)
178 3cnr_A Type IV fimbriae assemb 28.2 66 0.0023 24.3 4.2 39 157-197 40-89 (117)
179 1rws_A Hypothetical protein PF 27.4 28 0.00097 23.9 1.8 48 29-92 24-71 (77)
180 3pie_A 5'->3' exoribonuclease 27.3 66 0.0023 33.7 5.2 62 157-227 1064-1132(1155)
181 2k5p_A THis protein, thiamine- 26.1 43 0.0015 23.3 2.6 53 29-93 9-64 (78)
182 1ujs_A Actin-binding LIM prote 25.9 21 0.00073 26.0 1.0 27 105-135 48-74 (88)
183 3lnn_A Membrane fusion protein 24.2 3.1E+02 0.011 23.4 8.5 72 155-227 218-295 (359)
184 1vjk_A Molybdopterin convertin 22.3 2.1E+02 0.0071 20.1 6.6 22 28-49 29-50 (98)
185 1wgr_A Growth factor receptor- 20.3 1.1E+02 0.0037 22.6 3.9 38 13-54 11-48 (100)
No 1
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=100.00 E-value=1.5e-35 Score=235.64 Aligned_cols=119 Identities=33% Similarity=0.575 Sum_probs=79.3
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
++.|+|+|+|++.. +..++++++++||++||+||+.++||||++|||++...+|+.+..|++|+++|++|||++|++||
T Consensus 4 ~~~v~l~V~~~~~~-~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ih 82 (122)
T 1t0y_A 4 TEVYDLEITTNATD-FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIH 82 (122)
T ss_dssp CCEEEEEEEESSCC-SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEE
T ss_pred CCEEEEEEEECCCC-ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEE
Confidence 34799999987655 67999999999999999999999999999999999866667665677899999999999999999
Q ss_pred EeecCCCcccCCCccccCCcceeeecCHHHHhcchhhHHHHHHH
Q 026104 91 VIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEK 134 (243)
Q Consensus 91 VvD~~p~s~~~~~~l~d~s~veky~msee~Y~~r~dtvr~~kk~ 134 (243)
|+|++|.+ ++ |+|+|+|+||+||+|+|++|+||||+|||+
T Consensus 83 vvd~~p~~--~~--~~d~s~v~ky~~~~e~Y~~r~~tv~~~k~~ 122 (122)
T 1t0y_A 83 AVDVTGGN--ED--FKDESMVEKYEMSDDTYGKRTDSVRAWKKK 122 (122)
T ss_dssp EEECTTCC--CC--------------------------------
T ss_pred EEeCCCCC--CC--ccccccceeeecCHHHHhcchhHHHHHhhC
Confidence 99999987 33 999999999999999999999999999985
No 2
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=100.00 E-value=5.6e-35 Score=217.60 Aligned_cols=81 Identities=49% Similarity=1.084 Sum_probs=75.0
Q ss_pred cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCCCCCC
Q 026104 156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPER 235 (243)
Q Consensus 156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f~~~ 235 (243)
+..|+||+||+|.++.++|+|||+|+++..++|+|+|||||+|.||||||++|+|||+|+|+||+||||++|++|||||.
T Consensus 3 m~~i~vG~Rv~v~~~~~~G~VryvG~v~~~~~G~wvGVelDep~GkndGsv~G~rYF~C~~~~G~Fvr~~~v~~gd~Ppe 82 (84)
T 4b6m_A 3 METIHVGDRCLCRPGDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQPNYGGFLRPDQVEVGDFPPE 82 (84)
T ss_dssp --CCCTTCEEEETTTTEEEEEEEEEECTTSCSSEEEEEEESSSCCSBSSEETTEESSCCCTTSEEEECGGGEEECCCCCC
T ss_pred ccCcccCCEEEEcCCCeEEEEEEEecCCCCCCCEEEEEEECCCCCCcCCEECCEEEEecCCCeEEEecHHHeEECCcCCC
Confidence 45799999999976789999999999876579999999999999999999999999999999999999999999999996
Q ss_pred C
Q 026104 236 D 236 (243)
Q Consensus 236 d 236 (243)
|
T Consensus 83 ~ 83 (84)
T 4b6m_A 83 V 83 (84)
T ss_dssp C
T ss_pred C
Confidence 5
No 3
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=100.00 E-value=1.2e-34 Score=221.19 Aligned_cols=83 Identities=55% Similarity=1.070 Sum_probs=77.9
Q ss_pred hhhcCCCCCCCEEEEc-CC--CceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCccc
Q 026104 153 EDLCSNITVGDRCEVD-PG--AKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKV 229 (243)
Q Consensus 153 ~~~~~~~~vG~rv~v~-~~--~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~ 229 (243)
++.+..++||+||+|. ++ .++|+|||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+||||++|++
T Consensus 6 ~~~~~~~~vG~rv~V~~~g~~~~~GtVryvG~~~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~~v~~ 84 (95)
T 1lpl_A 6 EEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKF-KEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPVDVKV 84 (95)
T ss_dssp HHHHHTCCTTCEEEECCTTSCCEEEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEECSCCCTTSEEEECGGGEEE
T ss_pred hhhhhcCCCCCEEEEccCCCCceEEEEEEecccCC-CCCEEEEEEccCCCCccCCEECCEEEeEeCCCEEEEEcHHHceE
Confidence 3556689999999996 45 79999999999999 79999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 026104 230 GDYPERD 236 (243)
Q Consensus 230 g~f~~~d 236 (243)
||||++|
T Consensus 85 gdfp~~d 91 (95)
T 1lpl_A 85 GDFPELS 91 (95)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9999988
No 4
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=100.00 E-value=1.3e-34 Score=227.25 Aligned_cols=99 Identities=45% Similarity=0.830 Sum_probs=85.2
Q ss_pred cCCCchhhhc-----cccchhhhhcCCCCCCCEEEEc-CC--CceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECC
Q 026104 137 SQNPSAVENK-----LSNNYMEDLCSNITVGDRCEVD-PG--AKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKG 208 (243)
Q Consensus 137 ~~~p~~~~~~-----~~~~~~~~~~~~~~vG~rv~v~-~~--~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G 208 (243)
+|||++.++. +.+++.+..+..+.||+||+|. ++ .++|||||||++++ .+|+|+|||||+|.||||||++|
T Consensus 6 rf~~~~~~~~~~~~~~~~~~~~~~~~~~~VG~RV~V~~~g~~~~~GtVryvG~v~~-~~G~wvGVElDep~GKnDGsv~G 84 (113)
T 1whg_A 6 SGNEELRAQQEAEAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDF-KPGYWVGVRYDEPLGKNDGSVNG 84 (113)
T ss_dssp CCCSTHHHHHHHHHHHTTHHHHHHHTTSCSSCEEEECCSSSSCEEEEEEEEEECSS-SSSEEEEEEESSSCCSBBSEETT
T ss_pred ccChhhhhhhhhHhhhhhhHhhhhhhcCCCCCEEEEecCCCcceEEEEEEecccCC-CCCEEEEEEecCCCCccCCEECC
Confidence 5888864321 1233334556789999999996 44 69999999999999 79999999999999999999999
Q ss_pred EEeeecCCCceeeecCCCcccCCCCCCC
Q 026104 209 VRYFECPPLHGAMVRPDKVKVGDYPERD 236 (243)
Q Consensus 209 ~rYF~c~~~~G~Fv~~~~v~~g~f~~~d 236 (243)
+|||+|+|+||+||||++|++|||||+|
T Consensus 85 ~rYF~C~p~~GiFvr~~~v~~gdfp~~~ 112 (113)
T 1whg_A 85 KRYFECQAKYGAFVKPSAVTVGDSGPSS 112 (113)
T ss_dssp EECSCCCTTTEEEECGGGEEEEECCSSC
T ss_pred EEEeeeCCCeEEEECHHHeEECCCCCCC
Confidence 9999999999999999999999999976
No 5
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A
Probab=99.97 E-value=2.7e-31 Score=200.65 Aligned_cols=79 Identities=42% Similarity=0.856 Sum_probs=72.9
Q ss_pred CCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCCCCCCCC
Q 026104 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDP 237 (243)
Q Consensus 158 ~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f~~~d~ 237 (243)
+++||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+||+|++|+++|||++.+
T Consensus 1 ~l~vG~rV~V~-g~~~GtVryvG~~~~-~~G~wvGVelDep~GKndGsv~G~rYF~C~p~~G~Fv~~~kv~~~~~p~~~p 78 (90)
T 2e3h_A 1 ELKIGDRVLVG-GTKAGVVRFLGETDF-AKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPSTTP 78 (90)
T ss_dssp CCCTTCEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSSCCSBSSEETTEESCCCCTTCEEEEEGGGEEETTSCCC--
T ss_pred CCcCCCEEEEC-CCCEEEEEEeccCCC-CCCeEEEEEECCCCCCCCCEECCEEeeecCCCcEEEEcHHHeEECCCCCCCc
Confidence 47899999996 578999999999999 8999999999999999999999999999999999999999999999999775
Q ss_pred C
Q 026104 238 F 238 (243)
Q Consensus 238 ~ 238 (243)
.
T Consensus 79 ~ 79 (90)
T 2e3h_A 79 A 79 (90)
T ss_dssp -
T ss_pred c
Confidence 4
No 6
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.96 E-value=5.4e-30 Score=197.39 Aligned_cols=78 Identities=42% Similarity=0.927 Sum_probs=73.1
Q ss_pred hcCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcc-cCCCC
Q 026104 155 LCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK-VGDYP 233 (243)
Q Consensus 155 ~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~-~g~f~ 233 (243)
.+..++||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|+ ++|||
T Consensus 22 ~~~~~~VG~RV~V~-g~~~GtVryvG~v~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~d~p 99 (102)
T 1whh_A 22 EGAKAEVGDQVLVA-GQKQGIVRFYGKTDF-APGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQRIGSGP 99 (102)
T ss_dssp SCCSSCTTSEEEET-TTEEEEEEEEEECSS-SSSEEEEEECSSSCCSSSSEETTEECSCCCTTTEEEECGGGEEECCSCT
T ss_pred ccccCcCCCEEEEC-CCcEEEEEEeeecCC-CCCeEEEEEeCCCCCcCCCEECCEEeeecCCCcEEEecHHHeEECCCCC
Confidence 35679999999996 678999999999999 8999999999999999999999999999999999999999998 66899
Q ss_pred C
Q 026104 234 E 234 (243)
Q Consensus 234 ~ 234 (243)
+
T Consensus 100 ~ 100 (102)
T 1whh_A 100 S 100 (102)
T ss_dssp T
T ss_pred C
Confidence 6
No 7
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=1.2e-29 Score=210.83 Aligned_cols=81 Identities=41% Similarity=0.822 Sum_probs=76.3
Q ss_pred cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCCCCCC
Q 026104 156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPER 235 (243)
Q Consensus 156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f~~~ 235 (243)
...|+||+||+|. +.++|+|||||++++ ..|.|+|||||||.|||||+++|+|||+|.|+||+||+|++|.++|||++
T Consensus 36 ~~~l~VG~RV~V~-g~~~GtVRyvG~v~~-~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kV~~~dfP~~ 113 (172)
T 2cp6_A 36 ERELKIGDRVLVG-GTKAGVVRFLGETDF-AKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPST 113 (172)
T ss_dssp SSCCCSSCEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGCEECCCSSC
T ss_pred CccCccCCEEEEC-CCceEEEEEeCcCCC-CCCcEEEEEecCCCCccCCEECCEEeeeeCCCeEEEechHHeEECCcCCC
Confidence 4579999999996 679999999999999 89999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 026104 236 DPF 238 (243)
Q Consensus 236 d~~ 238 (243)
.+.
T Consensus 114 ~p~ 116 (172)
T 2cp6_A 114 TPA 116 (172)
T ss_dssp CSC
T ss_pred Ccc
Confidence 754
No 8
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=99.96 E-value=1.4e-29 Score=184.02 Aligned_cols=69 Identities=48% Similarity=1.029 Sum_probs=65.8
Q ss_pred CCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcc
Q 026104 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK 228 (243)
Q Consensus 158 ~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~ 228 (243)
.|+||+||+|. +.++|+|||+|++++ .+|+|+|||||+|.||||||++|+|||+|+|+||+||||++|+
T Consensus 2 ~~~vG~rv~v~-g~~~G~VryvG~~~~-~~g~w~GVeld~p~GkndGsv~G~rYF~c~p~~G~Fv~~~kvs 70 (72)
T 3rdv_A 2 DFRVGERVWVN-GNKPGFIQFLGETQF-APGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLT 70 (72)
T ss_dssp CCCTTCEEEET-TTEEEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEESCCCSTTCEEEECGGGEE
T ss_pred CcccCCEEEEC-CCCEEEEEEeeeCCC-CCceEEEEEECCCCCccCCEECCEEeCccCCCCEEEecHHHcc
Confidence 58999999997 578999999999999 8999999999999999999999999999999999999999985
No 9
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=2.6e-29 Score=188.40 Aligned_cols=75 Identities=44% Similarity=0.937 Sum_probs=69.6
Q ss_pred CCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccC-CCCC
Q 026104 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG-DYPE 234 (243)
Q Consensus 158 ~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~f~~ 234 (243)
.|+||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+||||++|... +|++
T Consensus 2 ~~~vG~rv~v~-g~~~GtVryvG~~~~-~~G~wvGVelDep~GKndGsv~G~rYF~c~~~~G~Fvr~~~v~~~~~~~~ 77 (86)
T 2e3i_A 2 DFRVGERVWVN-GNKPGFIQFLGETQF-APGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKVQAED 77 (86)
T ss_dssp CCCTTCEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSSCSSBSSEETTEESSCCSTTCEEEECGGGEESSCCC--
T ss_pred CccCCCEEEEC-CCcEEEEEEeeeCCC-CCCcEEEEEeCCCCCccCCEECCEEeeecCCCeEEEEcHHHcccccchhh
Confidence 58999999996 578999999999999 899999999999999999999999999999999999999999988 5764
No 10
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=99.96 E-value=4e-29 Score=189.99 Aligned_cols=75 Identities=41% Similarity=0.709 Sum_probs=69.2
Q ss_pred hcCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccC
Q 026104 155 LCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG 230 (243)
Q Consensus 155 ~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g 230 (243)
.+..++||+||.|....++|+|||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+||||++|++.
T Consensus 9 ~~~~~~vG~rv~v~~~~~~GtVryvG~~~~-~~G~wvGVelDep~GKndGsv~G~rYF~C~~~~G~Fvr~~~v~~~ 83 (93)
T 1txq_A 9 SARPLRVGSRVEVIGKGHRGTVAYVGATLF-ATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVF 83 (93)
T ss_dssp --CCCCTTCEEEETTTCCEEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEESCCCCTTCEEEECGGGEEEC
T ss_pred ccccCCCCCEEEECCCCeEEEEEEeeecCC-CCCcEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHeEEc
Confidence 356799999999974469999999999999 899999999999999999999999999999999999999999976
No 11
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Probab=99.96 E-value=3.8e-29 Score=190.56 Aligned_cols=76 Identities=47% Similarity=0.976 Sum_probs=71.1
Q ss_pred hhcCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCC
Q 026104 154 DLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGD 231 (243)
Q Consensus 154 ~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~ 231 (243)
+.+..++||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|....
T Consensus 14 ~~~~~~~vG~rV~V~-g~~~GtVryvG~v~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~kv~~~p 89 (95)
T 2cp2_A 14 DFLGDFVVGERVWVN-GVKPGVVQYLGETQF-APGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTRQP 89 (95)
T ss_dssp SSCCSCCTTCEEEGG-GSCEEEEEEEEECSS-SCSEEEEEEESSSCSSBBSEETTEECCCCCTTTEEEECGGGCCSSC
T ss_pred hhhhcCcCCCEEEEC-CceEEEEEEecccCC-CCCEEEEEEecCCCCccCCEECCEEecccCCCeEEEEcHHHCccCC
Confidence 456789999999997 578999999999999 8999999999999999999999999999999999999999998763
No 12
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=6.3e-29 Score=196.85 Aligned_cols=77 Identities=35% Similarity=0.817 Sum_probs=71.3
Q ss_pred hhcCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCCCC
Q 026104 154 DLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYP 233 (243)
Q Consensus 154 ~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f~ 233 (243)
+.+..++||+||.|. +.++|+|||||++++ .+|+|+|||||+|.||||||++|+|||+|+++||+||||++|. +||
T Consensus 27 ~~~~~l~VG~RV~V~-g~~~GtVRyvG~v~~-~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kv~--~~p 102 (122)
T 2coz_A 27 DELFDFHIGDRVLIG-NVQPGILRFKGETSF-AKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKIS--HIP 102 (122)
T ss_dssp CSCSSCCTTEEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSTTSSBCSEETTEECCCCCSSCEEEECGGGEE--CCC
T ss_pred cccccCcCCCEEEEC-CCcEEEEEEecccCC-CCCeEEEEEeCCCCCccCCEECCEEeeecCCCcEEEecHHHCc--cCC
Confidence 445689999999996 579999999999999 8999999999999999999999999999999999999999998 566
Q ss_pred C
Q 026104 234 E 234 (243)
Q Consensus 234 ~ 234 (243)
+
T Consensus 103 e 103 (122)
T 2coz_A 103 E 103 (122)
T ss_dssp T
T ss_pred c
Confidence 4
No 13
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=1e-28 Score=184.44 Aligned_cols=76 Identities=46% Similarity=0.846 Sum_probs=69.8
Q ss_pred cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCCCC
Q 026104 156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYP 233 (243)
Q Consensus 156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f~ 233 (243)
...++||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+||||++|..=+.+
T Consensus 5 ~~~~~vG~rv~v~-g~~~GtVryvG~~~~-~~G~wvGVelDep~GkndGsv~G~rYF~c~~~~G~Fv~~~kv~~~~~~ 80 (84)
T 2cp3_A 5 SSGLRLGDRVLVG-GTKTGVVRYVGETDF-AKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIRIGSG 80 (84)
T ss_dssp SCSCCTTCEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSSCCSBSSEETTEESSCCCTTTEEEEEGGGEEECCCS
T ss_pred ccccccCCEEEEC-CCCeEEEEEeccCCC-CCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEEcHHHeEEcccC
Confidence 3569999999996 578999999999999 899999999999999999999999999999999999999999765443
No 14
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.95 E-value=5.3e-29 Score=188.47 Aligned_cols=77 Identities=30% Similarity=0.649 Sum_probs=71.2
Q ss_pred cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCCCC
Q 026104 156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYP 233 (243)
Q Consensus 156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f~ 233 (243)
...++||+||+|....++|+|||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|++...+
T Consensus 10 ~~~~~vG~rV~V~~~~~~GtVryvG~v~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~~~~G~Fvr~~~v~~~~~~ 86 (91)
T 1whk_A 10 TVKLHEGSQVLLTSSNEMATVRYVGPTDF-ASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVTYRGIS 86 (91)
T ss_dssp CCCCCSSCEEEESSSCCEEEECCCEECSS-SSSEEEEEECSSSCSSCCSEETTEECCCCSTTCCCEECGGGEECCCCC
T ss_pred CccccCCCEEEECCCCeEEEEEEeeeCCC-CCCeEEEEEeCCCCCcCCCEECCEEEeecCCCeEEEEchHHcEEcCCC
Confidence 45799999999974479999999999999 899999999999999999999999999999999999999999876544
No 15
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.95 E-value=5.9e-29 Score=189.94 Aligned_cols=75 Identities=36% Similarity=0.811 Sum_probs=68.0
Q ss_pred cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccC-CC
Q 026104 156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG-DY 232 (243)
Q Consensus 156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~f 232 (243)
+..++||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|... +|
T Consensus 8 ~~~~~vG~rV~V~-g~~~GtVryvG~~~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~~v~~~~~~ 83 (96)
T 2z0w_A 8 EGELRLGERVLVV-GQRLGTIRFFGTTNF-APGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQRVTDS 83 (96)
T ss_dssp ---CCTTCCCCCC-CCCCEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEESSCCCTTSEEEECGGGCCCTTC-
T ss_pred cccCCCCCEEEEC-CCcEEEEEEeccCCC-CCCeEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHceeccch
Confidence 4569999999996 678999999999999 899999999999999999999999999999999999999999877 44
No 16
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=1.3e-28 Score=187.93 Aligned_cols=78 Identities=28% Similarity=0.495 Sum_probs=70.7
Q ss_pred cCCCCCCCEEEEc-CC---CceeEEEEecccC---CCCCccEEEEEEeCC---CCccCcEECCEEeeecCCCceeeecCC
Q 026104 156 CSNITVGDRCEVD-PG---AKRGVVKYVGQAE---SIAPGFWVGIQYDEP---LGKHNGIVKGVRYFECPPLHGAMVRPD 225 (243)
Q Consensus 156 ~~~~~vG~rv~v~-~~---~~~G~vryvG~~~---~~~~g~w~GVelDep---~GkndGs~~G~rYF~c~~~~G~Fv~~~ 225 (243)
+..|+||+||+|. ++ .++|+|||+|+++ + .+|.|+|||||+| .||||||++|+|||+|+|+||+||||+
T Consensus 5 ~~~~~VG~rV~V~~~~~~~~~~GtVryvG~v~~~~~-~~G~wvGVElDep~~~~GKnDGsv~G~rYF~C~~~~G~Fv~~~ 83 (95)
T 1whl_A 5 SSGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERT-VSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALD 83 (95)
T ss_dssp CCCCCSSCEEEEECSSSSCEEEEEEEEECCCCSSSS-CCCCCEEEEECSSSCSCCSSTTEETTEECCCCCTTTEEEECGG
T ss_pred cccCcCCCEEEEecCCCccceeEEEEEeCccCcccC-CCceEEEEEeCCCcccCCCCCCEECCEEEeecCCCeEEEEcHH
Confidence 4579999999995 23 4899999999998 5 7999999999999 899999999999999999999999999
Q ss_pred CcccCC-CCC
Q 026104 226 KVKVGD-YPE 234 (243)
Q Consensus 226 ~v~~g~-f~~ 234 (243)
+|++.+ .|.
T Consensus 84 ~v~~~~~~p~ 93 (95)
T 1whl_A 84 KLELIESGPS 93 (95)
T ss_dssp GEEECCSCSC
T ss_pred HeEEcCcCCC
Confidence 999985 553
No 17
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=2e-28 Score=189.41 Aligned_cols=81 Identities=25% Similarity=0.507 Sum_probs=74.3
Q ss_pred cCCCCCCCEEEEcC-CCceeEEEEecccCCCCCccEEEEEE-eCCCCccCcEECCEEeeecCCCceeeecCCCcccC-CC
Q 026104 156 CSNITVGDRCEVDP-GAKRGVVKYVGQAESIAPGFWVGIQY-DEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG-DY 232 (243)
Q Consensus 156 ~~~~~vG~rv~v~~-~~~~G~vryvG~~~~~~~g~w~GVel-Dep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~f 232 (243)
...|+||+||+|.. +.++|+|||||++++ .+|.|+|||| |+|.|||||+++|+|||+|.|+||+||||++|..+ .|
T Consensus 15 ~~~l~VG~RV~V~~~~~~~GtVryvG~v~~-~~G~wvGVEldDep~GKnDGsv~G~rYF~C~p~~G~FVr~~~v~~~~rf 93 (104)
T 1ixd_A 15 SHGLEVGSLAEVKENPPFYGVIRWIGQPPG-LNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSRF 93 (104)
T ss_dssp SSCCCTTSEEEECSSSCCCEEEEEEECCSS-SCCCEEEEEESSCCTTCBSSEETTEECSCCCTTCBEEEEGGGEEECCTT
T ss_pred CcccccCCEEEECcCCCcEEEEEEecccCC-CCceEEEEEecCCCCCCCCCEECCEEeeecCCCcEEEEcHHHceecccc
Confidence 45799999999962 379999999999999 7999999999 89999999999999999999999999999999998 59
Q ss_pred CCCCC
Q 026104 233 PERDP 237 (243)
Q Consensus 233 ~~~d~ 237 (243)
..++.
T Consensus 94 ~~~~~ 98 (104)
T 1ixd_A 94 ASLQP 98 (104)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 87653
No 18
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=1.9e-28 Score=191.73 Aligned_cols=75 Identities=41% Similarity=0.730 Sum_probs=70.3
Q ss_pred cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCC
Q 026104 156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGD 231 (243)
Q Consensus 156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~ 231 (243)
+..|+||+||.|....++|+|||||++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|++.+
T Consensus 31 ~~~l~VG~RV~V~~~g~~GtVRyvG~v~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFVr~~~v~~~~ 105 (112)
T 2coy_A 31 ARPLRVGSRVEVIGKGHRGTVAYVGATLF-ATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFE 105 (112)
T ss_dssp CCCCCTTCEEEETTTCCEEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEECSCCCTTTEEEECGGGEEECC
T ss_pred cccCCCCCEEEECCCCeEEEEEEeeecCC-CCCcEEEEEECCCCCCCCCEECCEEeeecCCCeEEEEchHHeEEcC
Confidence 45799999999974469999999999999 8999999999999999999999999999999999999999999874
No 19
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=1.1e-28 Score=188.01 Aligned_cols=73 Identities=42% Similarity=0.863 Sum_probs=68.8
Q ss_pred cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccC
Q 026104 156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG 230 (243)
Q Consensus 156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g 230 (243)
+..++||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|...
T Consensus 14 ~~~~~vG~RV~V~-g~~~GtVryvG~v~~-~~G~wvGVelDep~GKnDGsv~G~rYF~C~~~~G~Fv~~~kv~~~ 86 (95)
T 2cp0_A 14 ALGLRLGDRVLLD-GQKTGTLRFCGTTEF-ASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKISKA 86 (95)
T ss_dssp HHTCCTTCEEEET-TTEEEEEEEEECCSS-SCSCEEEEEESSSCCSBCSEETTEECCCCSSSCEEEECGGGEEEC
T ss_pred ccCCCCCCEEEEC-CCCeEEEEEecccCC-CCCcEEEEEecCCCCcCCCEECCEEeeecCCCcEEEEcHHHeecC
Confidence 4579999999996 678999999999999 899999999999999999999999999999999999999999865
No 20
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.95 E-value=1.9e-28 Score=188.74 Aligned_cols=77 Identities=38% Similarity=0.697 Sum_probs=71.2
Q ss_pred cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccC-CCCC
Q 026104 156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG-DYPE 234 (243)
Q Consensus 156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~f~~ 234 (243)
+..++||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.|||||+++|+|||+|.|+||+||++++|..- +++|
T Consensus 22 ~~~~~vG~RV~V~-g~~~GtVryvG~v~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~kv~~~~~~~~ 99 (102)
T 1whj_A 22 SLGLKLGDRVVIA-GQKVGTLRFCGTTEF-ASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKISKLKDSGP 99 (102)
T ss_dssp HHTCCTTCEEEET-TTEEEEEEEEEECSS-SCSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGEEESSSCCC
T ss_pred hhcCcCCCEEEEC-CCCEEEEEEeeecCC-CCCeEEEEEeCCCCCccCCEECCEEecccCCCeEEEEeHHHccccCCCCC
Confidence 4579999999996 678999999999999 899999999999999999999999999999999999999999865 5655
No 21
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=5e-28 Score=185.80 Aligned_cols=77 Identities=39% Similarity=0.750 Sum_probs=71.0
Q ss_pred hcCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccC-CCC
Q 026104 155 LCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG-DYP 233 (243)
Q Consensus 155 ~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~f~ 233 (243)
....|+||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.|||||+++|+|||+|.|+||+||||++|+.- ..|
T Consensus 20 ~~~~l~vG~rV~V~-g~~~GtVryvG~~~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~~~p 97 (100)
T 2cow_A 20 VPEWLREGEFVTVG-AHKTGVVRYVGPADF-QEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRATSGP 97 (100)
T ss_dssp CCSSCCTTCEEECS-SSCEEEEEEEECCSS-SSSCEEEEECSSSCCSCSSEETTEECCCSCTTCCEEECGGGCEECCCCS
T ss_pred CCccccCCCEEEEC-CCcEEEEEEeeeCCC-CCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEecHHHeeECCCCC
Confidence 34569999999996 579999999999999 899999999999999999999999999999999999999999876 455
No 22
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=5.8e-28 Score=195.26 Aligned_cols=75 Identities=44% Similarity=0.956 Sum_probs=70.8
Q ss_pred hhcCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccC
Q 026104 154 DLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG 230 (243)
Q Consensus 154 ~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g 230 (243)
+.+..|+||+||+|. +.++|+|||+|++++ ..|.|+|||||+|.|||||+++|+|||+|.++||+||||++|..+
T Consensus 60 ~~~~~l~VG~RV~V~-G~~~GtVRyvG~v~~-~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVrp~kv~~~ 134 (141)
T 2cp5_A 60 EFVDDFRVGERVWVN-GNKPGFIQFLGETQF-APGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRK 134 (141)
T ss_dssp CCCCCCCTTCEEEET-TSCEEEEEEEEECSS-SSSEEEEEEESSSCCSCBSEETTEESSCCCTTTEEEECGGGEESS
T ss_pred hhhhcCcCCCEEEEC-CCcEEEEEEeeecCC-CCCcEEEEEeCCCCCccCCEECCEEeeecCCCcEEEechHHeeec
Confidence 456789999999997 678999999999999 899999999999999999999999999999999999999999877
No 23
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=7.2e-28 Score=181.31 Aligned_cols=73 Identities=18% Similarity=0.393 Sum_probs=65.6
Q ss_pred hcCCCCCCCEEEEcCC--CceeEEEEecccCCC-CCccEEEEEEeCCCCccCcEECCEEee-ecCCCceeeecCCCc
Q 026104 155 LCSNITVGDRCEVDPG--AKRGVVKYVGQAESI-APGFWVGIQYDEPLGKHNGIVKGVRYF-ECPPLHGAMVRPDKV 227 (243)
Q Consensus 155 ~~~~~~vG~rv~v~~~--~~~G~vryvG~~~~~-~~g~w~GVelDep~GkndGs~~G~rYF-~c~~~~G~Fv~~~~v 227 (243)
.+..|+||+||+|.++ .+||||||+|++++. ..|+|+|||||||+||||||++|+||| .|.++||+||++..+
T Consensus 6 ~~~~i~VG~Rc~V~~~~~~rrGtVrfvG~~~~~~~~G~wVGVelDEP~GknDGsv~G~ryF~~c~~~~g~fV~~~d~ 82 (92)
T 1whm_A 6 SGPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHINDI 82 (92)
T ss_dssp CSCSSCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEETTEESCSSCCTTTEEEEEGGGE
T ss_pred cccCccccCeEEEcCCCceeeEEEEEEecCCCcCCCCeEEEEEcCCCCCCCCCeECCEEeccccCCCcceEcccccC
Confidence 3557999999999744 499999999999873 369999999999999999999999999 999999999998765
No 24
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.93 E-value=2.8e-26 Score=171.96 Aligned_cols=86 Identities=29% Similarity=0.512 Sum_probs=81.9
Q ss_pred ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (243)
Q Consensus 12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV 91 (243)
++|+|.||||++..+..|+||++++||++||+||+.++||||++|||+|++.++.....+++|+++|++|+|++|++|||
T Consensus 1 s~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 1 SVVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp CEEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred CEEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 57999999999988999999999999999999999999999999999999988888777889999999999999999999
Q ss_pred eecCCC
Q 026104 92 IDLDPS 97 (243)
Q Consensus 92 vD~~p~ 97 (243)
+|++|+
T Consensus 81 vd~~P~ 86 (86)
T 4b6w_A 81 VDLQPS 86 (86)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 999995
No 25
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.89 E-value=2.8e-23 Score=158.97 Aligned_cols=90 Identities=71% Similarity=1.198 Sum_probs=82.2
Q ss_pred cccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCC
Q 026104 7 QIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG 86 (243)
Q Consensus 7 ~~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg 86 (243)
-+..+++|+|+|||+++..+..|++|++++||++||+||+.++||||++|||+|+..+|+.+..|++|+++|++|+|++|
T Consensus 8 ~~~~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g 87 (97)
T 2kj6_A 8 HSHGDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDG 87 (97)
T ss_dssp CCCCCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSC
T ss_pred ccCCCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCC
Confidence 35678899999999988888899999999999999999999999999999999987666666567789999999999999
Q ss_pred cEEEEeecCC
Q 026104 87 YRLHVIDLDP 96 (243)
Q Consensus 87 ~~IhVvD~~p 96 (243)
++|||+|++|
T Consensus 88 ~~Ihlvd~~p 97 (97)
T 2kj6_A 88 FRLHIIDLDP 97 (97)
T ss_dssp CEEEEEECCC
T ss_pred CEEEEEeCCC
Confidence 9999999987
No 26
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.84 E-value=1.6e-20 Score=142.43 Aligned_cols=90 Identities=28% Similarity=0.409 Sum_probs=79.4
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
.+.|+|+|+|++.. +..|+++++++||.+||+||+.++||||++|||++...+|+.+..|++|+++|++|++++|++||
T Consensus 5 ~~~v~l~I~~~~~~-~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~ 83 (95)
T 1v6e_A 5 SSGVMVFISSSLNS-FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIH 83 (95)
T ss_dssp CCCEEEEEEETTSS-SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEE
T ss_pred CcEEEEEEEECCCC-eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEE
Confidence 34599999987654 67999999999999999999999999999999999865567655577899999999999999999
Q ss_pred EeecCCCcccC
Q 026104 91 VIDLDPSSVTS 101 (243)
Q Consensus 91 VvD~~p~s~~~ 101 (243)
|+|++|.++++
T Consensus 84 v~d~~P~~~~~ 94 (95)
T 1v6e_A 84 VIDHSGSGPSS 94 (95)
T ss_dssp EBCCSCCSSSC
T ss_pred EEECCcccccC
Confidence 99999988753
No 27
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.84 E-value=9.8e-21 Score=144.24 Aligned_cols=86 Identities=24% Similarity=0.465 Sum_probs=77.8
Q ss_pred cccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCC
Q 026104 7 QIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG 86 (243)
Q Consensus 7 ~~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg 86 (243)
.-.+++.|+|+||+++..++..|+++++++||++||+||+.++||||++|||+|.+ +|+.+..|++|+++|++|+|++|
T Consensus 9 ~~~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~-~g~~~~~L~~D~~tL~~Y~i~~g 87 (95)
T 2kjr_A 9 SHGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFK-GDTCVSTMDNNDAQLGYYANSDG 87 (95)
T ss_dssp CCCCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEE-TTEEEEECCCTTSBHHHHCCSSS
T ss_pred ccCCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEec-CCcccceeCCCCCCHhHCCcCCC
Confidence 34778899999999988778999999999999999999999999999999999975 35655557799999999999999
Q ss_pred cEEEEee
Q 026104 87 YRLHVID 93 (243)
Q Consensus 87 ~~IhVvD 93 (243)
++|||+|
T Consensus 88 stihlvD 94 (95)
T 2kjr_A 88 LRLHVVD 94 (95)
T ss_dssp CEEEEEE
T ss_pred CEEEEEC
Confidence 9999999
No 28
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.84 E-value=1.6e-20 Score=142.72 Aligned_cols=91 Identities=25% Similarity=0.268 Sum_probs=79.9
Q ss_pred ccCCceEEEEEEeC-CCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCC-CCeeeecCCCCCccCCCCCCC
Q 026104 8 IEGDESVLLRVTHS-NLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDT-NTKVAALTDNSRPLGFYSPLQ 85 (243)
Q Consensus 8 ~~~~~~v~v~It~s-~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~-g~~~~~l~~d~~~L~~y~i~d 85 (243)
..++++|+|+|+|+ .+....+|+||++++||++||.||+.+||+||+.|+|+++++. +.....|++|.++|++|++++
T Consensus 4 ~~~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~ 83 (97)
T 1wjn_A 4 GSSGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVEN 83 (97)
T ss_dssp CSSSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCT
T ss_pred cccCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCC
Confidence 35678899999985 3566789999999999999999999999999999999999642 334555889999999999999
Q ss_pred CcEEEEeecCCCc
Q 026104 86 GYRLHVIDLDPSS 98 (243)
Q Consensus 86 g~~IhVvD~~p~s 98 (243)
|++|||+|++|+|
T Consensus 84 G~~I~V~d~~p~s 96 (97)
T 1wjn_A 84 GDCLLVRWSGPSS 96 (97)
T ss_dssp TCEEEEECCSSCC
T ss_pred CCEEEEEecCCCC
Confidence 9999999999976
No 29
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.55 E-value=1.9e-14 Score=108.93 Aligned_cols=80 Identities=18% Similarity=0.087 Sum_probs=65.9
Q ss_pred ccccccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCC
Q 026104 4 RLQQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP 83 (243)
Q Consensus 4 ~~~~~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i 83 (243)
+......+.+|+|+|+ ++.++...+.+.|+.||++||++|+..+||||++|||++ .|+. .+|..+|++|+|
T Consensus 12 ~~~~~~~~~mIqI~Vk--~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif---~Gk~----LkD~~TL~dY~I 82 (93)
T 3plu_A 12 SGLVPRGSHMIEVVVN--DRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK---GGSV----LKDHISLEDYEV 82 (93)
T ss_dssp --------CEEEEEEE--CTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTSBTGGGTC
T ss_pred ccccCCCCceEEEEEE--CCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe---CCEE----ccCcCCHHHcCC
Confidence 3444556678999998 456778899999999999999999999999999999999 6876 478999999999
Q ss_pred CCCcEEEEe
Q 026104 84 LQGYRLHVI 92 (243)
Q Consensus 84 ~dg~~IhVv 92 (243)
++|++||+.
T Consensus 83 ~dgstLhL~ 91 (93)
T 3plu_A 83 HDQTNLELY 91 (93)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEE
Confidence 999999974
No 30
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.49 E-value=1.2e-13 Score=98.92 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=64.9
Q ss_pred ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (243)
Q Consensus 12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV 91 (243)
+.++|+|++ .+...++++++++||.+||++|+..+|+|++.|+|++ .|+. | +|+++|++|++++|++|||
T Consensus 3 M~m~i~vk~---~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~---~gk~---L-~d~~tL~~~~i~~g~~i~l 72 (77)
T 2bwf_A 3 MSLNIHIKS---GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY---SGKI---L-KDDQTVESYHIQDGHSVHL 72 (77)
T ss_dssp EEEEEEEEE---TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEE
T ss_pred eEEEEEEEE---CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE---CCeE---c-CCCCCHHHcCCCCCCEEEE
Confidence 458999986 3457788999999999999999999999999999998 5765 3 6779999999999999999
Q ss_pred eecC
Q 026104 92 IDLD 95 (243)
Q Consensus 92 vD~~ 95 (243)
++..
T Consensus 73 ~~~~ 76 (77)
T 2bwf_A 73 VKSQ 76 (77)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9853
No 31
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=8.3e-14 Score=104.13 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=67.5
Q ss_pred cCCceEEEEEEeCCCCCceeEEEcCCC-----CCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCC
Q 026104 9 EGDESVLLRVTHSNLKSFSADVRFPLQ-----MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP 83 (243)
Q Consensus 9 ~~~~~v~v~It~s~~~~~~~e~r~~~~-----~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i 83 (243)
..+..|+|+|+++ +...+++++++ +||.+||++|+..+|+||+.|||++ .|+. |.+++++|++|++
T Consensus 3 ~~~~~~~v~Vk~~---~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~---~Gk~---L~D~~~~L~~~~i 73 (92)
T 1wxv_A 3 SGSSGLTVTVTHS---NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIF---KGKS---LKEMETPLSALGI 73 (92)
T ss_dssp CCCSSEEEEEECS---SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEE---TTEE---ECCSSSBHHHHTC
T ss_pred CCCCeEEEEEEEC---CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEE---CCee---cCCCcccHHHCCC
Confidence 3456799999964 34668899995 9999999999999999999999998 5776 4455889999999
Q ss_pred CCCcEEEEeecCC
Q 026104 84 LQGYRLHVIDLDP 96 (243)
Q Consensus 84 ~dg~~IhVvD~~p 96 (243)
++|++|||+...+
T Consensus 74 ~~g~~i~l~~~~~ 86 (92)
T 1wxv_A 74 QDGCRVMLIGKKN 86 (92)
T ss_dssp CSSEEEEEESCCS
T ss_pred CCCCEEEEEecCC
Confidence 9999999999765
No 32
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.47 E-value=1.6e-13 Score=100.38 Aligned_cols=77 Identities=14% Similarity=0.134 Sum_probs=65.2
Q ss_pred ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhH---hCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRK---CGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (243)
Q Consensus 12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~---tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~ 88 (243)
+.++|+|++. .+...++++++++||.+||++|+.. +|+|+++|||++ .|+. | +|+++|++|++++|++
T Consensus 4 ~~m~i~vk~~--~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~~i~~g~~ 74 (85)
T 2wyq_A 4 MAVTITLKTL--QQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY---AGKI---L-SDDVPIRDYRIDEKNF 74 (85)
T ss_dssp CCEEEEEEET--TSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE---TTEE---C-CTTSBGGGGCCCTTSE
T ss_pred ceEEEEEEEC--CCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEE---CCEE---C-cCCCCHHHcCCCCCCE
Confidence 5689999854 3456788999999999999999998 999999999998 6775 3 6789999999999999
Q ss_pred EEEeecCCC
Q 026104 89 LHVIDLDPS 97 (243)
Q Consensus 89 IhVvD~~p~ 97 (243)
|||+...|.
T Consensus 75 i~l~~~~~~ 83 (85)
T 2wyq_A 75 VVVMVTKTK 83 (85)
T ss_dssp EEEEEC---
T ss_pred EEEEEcCCC
Confidence 999998764
No 33
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.47 E-value=2.1e-13 Score=98.69 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=63.7
Q ss_pred ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (243)
Q Consensus 12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV 91 (243)
..++|+|++ +.++...+.+++++||.+||++|+..+|+||+.|||++ .|+. .+|+.+|++|++++|++||+
T Consensus 3 ~~m~i~Vk~--~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~---~G~~----L~d~~tL~~~~i~~~~~l~l 73 (79)
T 3phx_B 3 EPLSILVRN--NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF---EGKP----LEDQLPLGEYGLKPLSTVFM 73 (79)
T ss_dssp CCEEEEEEC--TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTSBGGGGTCCTTCEEEE
T ss_pred CCEEEEEEe--CCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE---CCEE----CCCCCcHHHCCCCCCCEEEE
Confidence 458899984 44567788999999999999999999999999999999 6776 36789999999999999999
Q ss_pred e
Q 026104 92 I 92 (243)
Q Consensus 92 v 92 (243)
+
T Consensus 74 ~ 74 (79)
T 3phx_B 74 N 74 (79)
T ss_dssp E
T ss_pred E
Confidence 7
No 34
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.45 E-value=2.9e-13 Score=103.45 Aligned_cols=80 Identities=15% Similarity=0.216 Sum_probs=66.4
Q ss_pred CceEEEEEEeC--CCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104 11 DESVLLRVTHS--NLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (243)
Q Consensus 11 ~~~v~v~It~s--~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~ 88 (243)
...|+|+|++. .+..+...+.+++++||.+||++|+..+|||+++|+|++ .|+. |.++.++|++|+|++|++
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~gk~---L~D~~~tL~~ygI~~g~~ 78 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY---MEQL---LTDDHCSLGSYGLKDGDM 78 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE---TTEE---ECCSSSBHHHHTCCTTEE
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEE---CCEE---CCCCcccHHHCCCCCCCE
Confidence 34588888763 233356778899999999999999999999999999998 5765 445568999999999999
Q ss_pred EEEeecCC
Q 026104 89 LHVIDLDP 96 (243)
Q Consensus 89 IhVvD~~p 96 (243)
|||+....
T Consensus 79 l~l~~~~~ 86 (102)
T 1v5o_A 79 VVLLQKDN 86 (102)
T ss_dssp EEECBCCC
T ss_pred EEEEECCC
Confidence 99998753
No 35
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.44 E-value=1.4e-13 Score=101.84 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=64.4
Q ss_pred ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (243)
Q Consensus 12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV 91 (243)
+-++|+|+. +.++..++++++++||++||++|+..+|+||++|||++ .|+. +.+|+++|++|++++|++|||
T Consensus 9 ~~~~i~vk~--l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---lL~D~~tL~~y~I~~gs~i~l 80 (84)
T 2kk8_A 9 SHMKFLVEN--LNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIV---DGIV---ILREDLTVEQCQIVPTSDIQL 80 (84)
T ss_dssp CCEEEEEEE--TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEE---CCCSSSBHHHHTCCTTSCEEE
T ss_pred CceEEEEEe--cCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE---CCEE---ecCCcCCHHHcCCCCCCEEEE
Confidence 458899974 55677889999999999999999999999999999999 5765 247899999999999999998
Q ss_pred e
Q 026104 92 I 92 (243)
Q Consensus 92 v 92 (243)
+
T Consensus 81 v 81 (84)
T 2kk8_A 81 E 81 (84)
T ss_dssp E
T ss_pred E
Confidence 7
No 36
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.3e-13 Score=105.45 Aligned_cols=78 Identities=15% Similarity=0.246 Sum_probs=64.3
Q ss_pred cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (243)
Q Consensus 9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~ 88 (243)
.+.+.|+|+|++ .+...++++++++||.+||++|+..+|+||+.|||++ .|+. .+|+.+|++|++++|++
T Consensus 24 ~~~m~i~I~Vk~---~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~----L~D~~tL~~~gI~~g~t 93 (101)
T 3m63_B 24 QGAMSLNIHIKS---GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY---SGKI----LKDDQTVESYHIQDGHS 93 (101)
T ss_dssp -----CCEEEEC---SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE---TTEE----CCTTSBTTTTTCCTTEE
T ss_pred cCCcEEEEEEEE---CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE---CCEE----CCCcCcHHHCCCCCCCE
Confidence 345568889985 3446678899999999999999999999999999999 6765 37899999999999999
Q ss_pred EEEeecCC
Q 026104 89 LHVIDLDP 96 (243)
Q Consensus 89 IhVvD~~p 96 (243)
|||+..+|
T Consensus 94 I~lv~~~P 101 (101)
T 3m63_B 94 VHLVKSQP 101 (101)
T ss_dssp EEECCCC-
T ss_pred EEEEeCCC
Confidence 99998776
No 37
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.44 E-value=5.5e-13 Score=99.41 Aligned_cols=76 Identities=20% Similarity=0.259 Sum_probs=66.5
Q ss_pred ccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104 8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY 87 (243)
Q Consensus 8 ~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~ 87 (243)
......++|+|+. +.+....+++++++||.+||++|+..+|+|++.|||++ .|+. .+|+.+|++|++++|+
T Consensus 12 ~~~~~~m~i~Vk~--~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~----L~D~~tL~~~gi~~g~ 82 (91)
T 3v6c_B 12 LVPRGSMQIFVNT--LTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKES 82 (91)
T ss_dssp CCCCCSEEEEEEC--TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEE----CCTTCBTGGGTCCTTC
T ss_pred CCCCCeEEEEEEe--CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE---CCeE----CCCcCcHHHCCCCCCC
Confidence 3456679999984 45567788999999999999999999999999999999 6765 3678999999999999
Q ss_pred EEEEe
Q 026104 88 RLHVI 92 (243)
Q Consensus 88 ~IhVv 92 (243)
+|||+
T Consensus 83 ~i~l~ 87 (91)
T 3v6c_B 83 TLHLV 87 (91)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 38
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=6.2e-13 Score=100.17 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=66.7
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhH---hCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRK---CGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~---tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
++|+|++. .+...++++++++||.+||++|+.. +|+|+++|||++ .|+. | +|+.+|++|++++|++||
T Consensus 1 M~I~Vk~~--~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~ygI~~g~~i~ 71 (95)
T 1uel_A 1 MQVTLKTL--QQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY---AGKI---L-NDDTALKEYKIDEKNFVV 71 (95)
T ss_dssp CEEEEEET--TCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE---TTEE---C-CTTSBGGGGTCCSSSEEE
T ss_pred CEEEEEeC--CCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE---CCEE---C-CCcCcHHHCCCCCCCEEE
Confidence 46788743 4457789999999999999999999 899999999998 6775 3 678999999999999999
Q ss_pred EeecCCCccc
Q 026104 91 VIDLDPSSVT 100 (243)
Q Consensus 91 VvD~~p~s~~ 100 (243)
|+...|.+..
T Consensus 72 l~~~~~~~~~ 81 (95)
T 1uel_A 72 VMVTKPKAVS 81 (95)
T ss_dssp EEESSCCCCC
T ss_pred EEEeCCCCCC
Confidence 9998876544
No 39
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.43 E-value=6.5e-13 Score=97.62 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=66.1
Q ss_pred cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (243)
Q Consensus 9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~ 88 (243)
..+..++|+|++ +.+....+++++++||.+||++|+..+|+||+.|+|++ .|+. .+|+.+|.+|++++|++
T Consensus 8 ~~~~~m~i~vk~--~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~---~G~~----L~d~~tL~~~~i~~~~~ 78 (88)
T 3dbh_I 8 GSGGSMLIKVKT--LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQ----MNDEKTAADYKILGGSV 78 (88)
T ss_dssp SCCCCEEEEEEC--TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE---TTEE----CCTTSBGGGGTCCTTCE
T ss_pred CCCCcEEEEEEc--CCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE---CCeE----CCCCCcHHHcCCCCCCE
Confidence 445569999984 34567788999999999999999999999999999999 6775 36799999999999999
Q ss_pred EEEee
Q 026104 89 LHVID 93 (243)
Q Consensus 89 IhVvD 93 (243)
|||+=
T Consensus 79 i~l~~ 83 (88)
T 3dbh_I 79 LHLVL 83 (88)
T ss_dssp EEECC
T ss_pred EEEEE
Confidence 99973
No 40
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.42 E-value=5.5e-13 Score=100.67 Aligned_cols=78 Identities=19% Similarity=0.171 Sum_probs=67.2
Q ss_pred ccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCC-CccCCCCCCCC
Q 026104 8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNS-RPLGFYSPLQG 86 (243)
Q Consensus 8 ~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~-~~L~~y~i~dg 86 (243)
-+++..|+|+|++. .. ..++++++++||.+||++|+..+|+||++|||++ .|+. | +|+ ++|++|++++|
T Consensus 10 ~~~~~~~~I~Vk~~--~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~~tL~~ygI~~g 79 (94)
T 2kan_A 10 HAAVRKIHVTVKFP--SK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYY---SGIE---L-ADDYRNLNEYGITEF 79 (94)
T ss_dssp CSSSCCEEEEEECS--SC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEE---TTEE---E-CCTTSBHHHHTCCTT
T ss_pred ccCCCCEEEEEEcC--Cc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE---CCEE---C-CCCcccHHHCCCCCC
Confidence 35667799999854 33 6788999999999999999999999999999998 6776 3 566 99999999999
Q ss_pred cEEEEeecC
Q 026104 87 YRLHVIDLD 95 (243)
Q Consensus 87 ~~IhVvD~~ 95 (243)
++|||+..-
T Consensus 80 stl~lv~r~ 88 (94)
T 2kan_A 80 SEIVVFLKS 88 (94)
T ss_dssp EEEEEEECC
T ss_pred CEEEEEEeC
Confidence 999999753
No 41
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.42 E-value=4.4e-13 Score=98.61 Aligned_cols=77 Identities=14% Similarity=0.124 Sum_probs=66.5
Q ss_pred ccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104 8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY 87 (243)
Q Consensus 8 ~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~ 87 (243)
+.....++|+|++. .++..++++++++||.+||++|+..+|+||+.|+|++ .|+. .+|+++|++|++++|+
T Consensus 2 ~~~~~~m~i~Vk~~--~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~---~Gk~----L~d~~tL~~~~i~~g~ 72 (87)
T 1wh3_A 2 SSGSSGIQVFVKNP--DGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF---QGQV----LQDWLGLGIYGIQDSD 72 (87)
T ss_dssp CCCSSSEEEEEEET--TTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE---TTEE----CCSSSBHHHHTCCTTE
T ss_pred CCCCCCEEEEEEcC--CCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE---CCEE----ccCCCCHHHCCCCCCC
Confidence 34556799999853 3457788999999999999999999999999999998 6765 3688999999999999
Q ss_pred EEEEee
Q 026104 88 RLHVID 93 (243)
Q Consensus 88 ~IhVvD 93 (243)
+|||+=
T Consensus 73 ~i~l~~ 78 (87)
T 1wh3_A 73 TLILSK 78 (87)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999975
No 42
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.42 E-value=1.8e-13 Score=103.52 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=66.5
Q ss_pred ccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104 8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY 87 (243)
Q Consensus 8 ~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~ 87 (243)
..+++.|+|+|+++ ....+++++++.||.+||++|+..+||||++|||++ .|+. | +| .+|++|+|++|+
T Consensus 12 ~~~~~~~~i~Vk~~---g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~---~Gk~---L-dd-~tL~~~~i~~g~ 80 (95)
T 1v86_A 12 GVGKELVDLKIIWN---KTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY---KGLV---P-ED-KTLREIKVTSGA 80 (95)
T ss_dssp CCCCCCEEEEEEET---TEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBS---SSBC---C-SS-SBHHHHCCCTTE
T ss_pred CCCCceEEEEEEEC---CEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCee---C-Cc-CcHHHCCCCCCC
Confidence 45667899999864 357789999999999999999999999999999998 5765 4 44 499999999999
Q ss_pred EEEEeecC
Q 026104 88 RLHVIDLD 95 (243)
Q Consensus 88 ~IhVvD~~ 95 (243)
+|||+++.
T Consensus 81 ~i~lv~~~ 88 (95)
T 1v86_A 81 KIMVVGST 88 (95)
T ss_dssp EEEECCSS
T ss_pred EEEEEecc
Confidence 99999975
No 43
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=5.9e-13 Score=96.23 Aligned_cols=76 Identities=18% Similarity=0.233 Sum_probs=65.2
Q ss_pred cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (243)
Q Consensus 9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~ 88 (243)
..+..++|+|++. .++..++++++++||.+||++|+..+|+|++.|+|++ .|+. | +|+++|++|++++|++
T Consensus 3 ~~~~~m~i~vk~~--~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~---~gk~---L-~d~~tL~~~~i~~g~~ 73 (81)
T 2dzi_A 3 SGSSGMQLTVKAL--QGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF---KGKA---L-ADGKRLSDYSIGPNSK 73 (81)
T ss_dssp CSSSSEEEEEEET--TSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE---TTEE---C-CTTSBGGGGTCCSSBC
T ss_pred CCCCcEEEEEEeC--CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE---CCeE---C-CCCCcHHHcCCCCCCE
Confidence 3456799999843 3457788999999999999999999999999999998 5775 3 6789999999999999
Q ss_pred EEEee
Q 026104 89 LHVID 93 (243)
Q Consensus 89 IhVvD 93 (243)
|||+=
T Consensus 74 i~l~~ 78 (81)
T 2dzi_A 74 LNLVV 78 (81)
T ss_dssp CEEEC
T ss_pred EEEEE
Confidence 99873
No 44
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.42 E-value=1.1e-12 Score=100.20 Aligned_cols=79 Identities=13% Similarity=0.186 Sum_probs=67.0
Q ss_pred ccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104 8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY 87 (243)
Q Consensus 8 ~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~ 87 (243)
...+..|+|+|++. +...++++++++||.+||++|+..+|+||+.|+|++ .|+. | +|+++|++|++++|+
T Consensus 20 ~~~~~~m~I~Vk~~---g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~gI~~g~ 89 (101)
T 2klc_A 20 QGHPKIMKVTVKTP---KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF---AGKI---L-KDQDTLSQHGIHDGL 89 (101)
T ss_dssp ---CCCEEEEEECS---SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE---TTEE---E-CTTCCTGGGTCCTTC
T ss_pred CCCCCeEEEEEEeC---CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCcCcHHHcCCCCCC
Confidence 34556799999854 456788999999999999999999999999999998 5765 3 678999999999999
Q ss_pred EEEEeecCC
Q 026104 88 RLHVIDLDP 96 (243)
Q Consensus 88 ~IhVvD~~p 96 (243)
+|||+...|
T Consensus 90 ~I~l~~~~~ 98 (101)
T 2klc_A 90 TVHLVIKTQ 98 (101)
T ss_dssp EEEEEECCS
T ss_pred EEEEEEcCC
Confidence 999998654
No 45
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.41 E-value=4.2e-13 Score=102.94 Aligned_cols=75 Identities=16% Similarity=0.151 Sum_probs=65.7
Q ss_pred cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (243)
Q Consensus 9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~ 88 (243)
.+..+|+|+|+ +++++...+.++++.||.+||++|+..+||||++|||++ .|+. .+|+.+|++|+|++|++
T Consensus 24 ~~~~mm~I~VK--tl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~---~Gk~----L~D~~TL~dygI~~gst 94 (100)
T 1uh6_A 24 GAATMIEVVCN--DRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKK---WYTI----FKDHVSLGDYEIHDGMN 94 (100)
T ss_dssp SCCCEEEEEEE--CSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEE---TTEE----CCSSCBHHHHTCCTTEE
T ss_pred CCCCeEEEEEE--CCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEE---CCEE----CCCCCCHHHcCCCCCCE
Confidence 34557999998 445567788999999999999999999999999999998 6876 37899999999999999
Q ss_pred EEEe
Q 026104 89 LHVI 92 (243)
Q Consensus 89 IhVv 92 (243)
||++
T Consensus 95 lhL~ 98 (100)
T 1uh6_A 95 LELY 98 (100)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 46
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=1e-12 Score=94.72 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=61.8
Q ss_pred eEEEEEEeCCCCCce-eEEE-cCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 13 SVLLRVTHSNLKSFS-ADVR-FPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 13 ~v~v~It~s~~~~~~-~e~r-~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
.++|+|++. .++. ..+. ++++.||.+||++|+..+|+||++|+|++ .|+. | +|+++|++|++++|++||
T Consensus 2 ~m~i~Vk~~--~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~---~g~~---L-~d~~tL~~~~i~~g~~i~ 72 (78)
T 2faz_A 2 SMWIQVRTM--DGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY---RGKQ---M-EDGHTLFDYEVRLNDTIQ 72 (78)
T ss_dssp CEEEEEEET--TSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTCBTTTTTCCTTCEEE
T ss_pred cEEEEEEEC--CCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCCCCHHHcCCCCCCEEE
Confidence 478899854 3344 3788 99999999999999999999999999998 6765 3 688999999999999999
Q ss_pred Eee
Q 026104 91 VID 93 (243)
Q Consensus 91 VvD 93 (243)
++=
T Consensus 73 l~~ 75 (78)
T 2faz_A 73 LLV 75 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 974
No 47
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.41 E-value=1.1e-12 Score=97.28 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=66.9
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
+..|+|+|++ +.++...+.+++++||.+||++|+..+|+|++.|||++ .|+. .+|+.+|++|++ +|++||
T Consensus 3 ~~~m~i~Vk~--~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~---~Gk~----L~d~~tL~~~~i-~g~~i~ 72 (90)
T 4dwf_A 3 PDSLEVLVKT--LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY---QGRV----LQDDKKLQEYNV-GGKVIH 72 (90)
T ss_dssp CCEEEEEEEE--TTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTSBGGGGTC-TTEEEE
T ss_pred CcEEEEEEEc--CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCeE----CCCCCCHHHcCC-CCcEEE
Confidence 3568999985 34556788899999999999999999999999999999 6876 378999999999 899999
Q ss_pred EeecCCCc
Q 026104 91 VIDLDPSS 98 (243)
Q Consensus 91 VvD~~p~s 98 (243)
++...|.+
T Consensus 73 l~~~~~~~ 80 (90)
T 4dwf_A 73 LVERAPPQ 80 (90)
T ss_dssp EEECCCC-
T ss_pred EEecCCCC
Confidence 99976644
No 48
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.40 E-value=1.2e-12 Score=100.05 Aligned_cols=81 Identities=14% Similarity=0.141 Sum_probs=67.5
Q ss_pred cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHH-HhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCC-CCC
Q 026104 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKL-WRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP-LQG 86 (243)
Q Consensus 9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KL-e~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i-~dg 86 (243)
.....|+|+|++.....+..++.++++.||.+||++| +..+|+||++|||+| .|+.+ +|+.+|++|++ ++|
T Consensus 15 ~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~---~Gk~L----~D~~tL~dy~I~~~g 87 (98)
T 4a20_A 15 MDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLL---KGKVL----HDNLFLSDLKVTPAN 87 (98)
T ss_dssp ---CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEE---TTEEE----CTTCBGGGSCCBTTB
T ss_pred CCCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEE---CCEEC----cCcCCHHHcCcCCCC
Confidence 4556799999965544446677888999999999999 999999999999999 68763 78899999999 999
Q ss_pred cEEEEeecCC
Q 026104 87 YRLHVIDLDP 96 (243)
Q Consensus 87 ~~IhVvD~~p 96 (243)
.+||++=+.|
T Consensus 88 ~ti~lmvskp 97 (98)
T 4a20_A 88 STITVMIKPN 97 (98)
T ss_dssp CEEEEEECCC
T ss_pred CEEEEEEeCC
Confidence 9999987665
No 49
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.40 E-value=9.4e-13 Score=97.84 Aligned_cols=71 Identities=20% Similarity=0.306 Sum_probs=62.2
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++|+|++ +++....+++++++||.+||++|+..+|+||+.|||++ .|+. .+|+.+|++|++++|++||++=
T Consensus 1 M~I~Vk~--~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~----L~D~~tL~~~~i~~g~~l~l~~ 71 (88)
T 4fbj_B 1 MLIKVKT--LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQ----MNDEKTAADYKILGGSVLHLVL 71 (88)
T ss_dssp CEEEEEE--TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEE----CCTTSBTTTTTCCTTCEEEEEC
T ss_pred CEEEEEc--CCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE---CCeE----CCCCCcHHHcCCCCCCEEEEEE
Confidence 4678874 34557788999999999999999999999999999999 6775 3789999999999999999984
No 50
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.40 E-value=9.9e-13 Score=97.11 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=63.0
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
+..++|+|++. .+...++.+++++||.+||++|+..+|+||++|||++ .|+. .+|+.+|++|++ +|++||
T Consensus 15 ~~~m~i~Vk~~--~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~---~Gk~----L~D~~tL~~~~i-~g~~i~ 84 (88)
T 4eew_A 15 PDSLEVLVKTL--DSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY---QGRV----LQDDKKLQEYNV-GGKVIH 84 (88)
T ss_dssp CCEEEEEEEET--TSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTSBGGGGTC-TTEEEE
T ss_pred CCeEEEEEEcC--CCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCEE----CCCCCcHHHcCC-CCcEEE
Confidence 45689999853 4456788899999999999999999999999999999 6775 367999999999 899999
Q ss_pred Ee
Q 026104 91 VI 92 (243)
Q Consensus 91 Vv 92 (243)
++
T Consensus 85 lv 86 (88)
T 4eew_A 85 LV 86 (88)
T ss_dssp EE
T ss_pred EE
Confidence 97
No 51
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.39 E-value=7.5e-13 Score=103.24 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=67.8
Q ss_pred CCceEEEEEEeCC--------CCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCC
Q 026104 10 GDESVLLRVTHSN--------LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFY 81 (243)
Q Consensus 10 ~~~~v~v~It~s~--------~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y 81 (243)
.++.|+|.|++++ +.++..++++++++||.+||++|+..+||||+.|+|++ .|+. | +|+.+|++|
T Consensus 22 ~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~---~Gk~---L-~D~~tL~~y 94 (115)
T 1we7_A 22 NKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY---EGIF---I-KDSNSLAYY 94 (115)
T ss_dssp CCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE---TTEE---E-CTTSBHHHH
T ss_pred CCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE---CCEE---C-CCCCCHHHC
Confidence 4457999999876 35567889999999999999999999999999999999 5765 3 688999999
Q ss_pred CCCCCcEEEEee
Q 026104 82 SPLQGYRLHVID 93 (243)
Q Consensus 82 ~i~dg~~IhVvD 93 (243)
++++|++|||+=
T Consensus 95 ~i~~g~~i~lv~ 106 (115)
T 1we7_A 95 NMASGAVIHLAL 106 (115)
T ss_dssp TCCSSCEEEEEE
T ss_pred CCCCCCEEEEEE
Confidence 999999999974
No 52
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.39 E-value=4.5e-13 Score=99.49 Aligned_cols=76 Identities=18% Similarity=0.157 Sum_probs=65.6
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
++.++|+|++. .++...+++++++||.+||++|+..+||||++|||++ .|+. .+|+++|++|++++|++||
T Consensus 2 ~~~m~I~Vk~~--~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~----L~D~~tL~~~~I~~g~~i~ 72 (88)
T 2hj8_A 2 DEPLSILVRNN--KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF---EGKP----LEDQLPLGEYGLKPLSTVF 72 (88)
T ss_dssp CCEEEEEEEET--TSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEES---SSSC----CCTTSBHHHHHCSTTCEEE
T ss_pred CccEEEEEECC--CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE---CCEE----CCCCCcHHHcCCCCCCEEE
Confidence 44689999854 3457788999999999999999999999999999998 5775 3688999999999999999
Q ss_pred EeecC
Q 026104 91 VIDLD 95 (243)
Q Consensus 91 VvD~~ 95 (243)
|+...
T Consensus 73 l~~~~ 77 (88)
T 2hj8_A 73 MNLRL 77 (88)
T ss_dssp EEEC-
T ss_pred EEEEc
Confidence 99853
No 53
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.39 E-value=1.5e-12 Score=92.57 Aligned_cols=71 Identities=20% Similarity=0.322 Sum_probs=61.6
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++|+|++ +.+...++++++++||.+||++|+..+|+||+.|+|.+ .|+. | +|+.+|++|++++|++||++=
T Consensus 1 M~i~vk~--~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~---~g~~---L-~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 1ndd_A 1 MLIKVKT--LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQ---M-NDEKTAADYKILGGSVLHLVL 71 (76)
T ss_dssp CEEEEEC--TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBGGGGTCCTTCEEEEEE
T ss_pred CEEEEEC--CCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE---CCEE---C-CCCCcHHHcCCCCCCEEEEEE
Confidence 4678874 34457788999999999999999999999999999998 5765 3 678999999999999999974
No 54
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=1.6e-12 Score=99.69 Aligned_cols=81 Identities=12% Similarity=0.115 Sum_probs=66.9
Q ss_pred CceEEEEEEeCCCC--CceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104 11 DESVLLRVTHSNLK--SFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (243)
Q Consensus 11 ~~~v~v~It~s~~~--~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~ 88 (243)
-++..|.|..++-. .+..++.+++++||.+||++|+..+|+||++|||++ .|+. ++|+++|.+|+|++|++
T Consensus 13 tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~---~GKi----L~D~~TL~~y~I~~gst 85 (100)
T 1wju_A 13 TGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVI---NKKQ----LQLGKTLEEQGVAHNVK 85 (100)
T ss_dssp CCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEE---TTEE----CCTTSBHHHHTCCSSEE
T ss_pred cceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEe---CCeE----CCCCCcHHHcCCCCCCE
Confidence 34455555544422 457889999999999999999999999999999998 7887 37889999999999999
Q ss_pred EEEeecCCCc
Q 026104 89 LHVIDLDPSS 98 (243)
Q Consensus 89 IhVvD~~p~s 98 (243)
|||+-+.+.+
T Consensus 86 i~vl~lrg~~ 95 (100)
T 1wju_A 86 AMVLELKQSS 95 (100)
T ss_dssp EEEECCCCCC
T ss_pred EEEEEECCCC
Confidence 9999876543
No 55
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.37 E-value=1.3e-12 Score=100.60 Aligned_cols=76 Identities=12% Similarity=0.099 Sum_probs=64.4
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
+|+|+|++ +.+....+.+++++||.+||++|+..+|+|+++|||+| .|+. .+|+.+|++|+|++|++|||+
T Consensus 1 mm~I~Vk~--~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~----L~D~~tL~~~~i~~g~~i~lv 71 (106)
T 3m62_B 1 MVSLTFKN--FKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIY---SGKV----LQDSKTVSECGLKDGDQVVFM 71 (106)
T ss_dssp --CEEEEC--TTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE---TTEE----CCTTSBTTTTTCCTTCEEEEE
T ss_pred CEEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE---CCEE----CCCcCCHHHcCCCCCCEEEEE
Confidence 36788983 45567888999999999999999999999999999999 6876 367899999999999999999
Q ss_pred ecCCC
Q 026104 93 DLDPS 97 (243)
Q Consensus 93 D~~p~ 97 (243)
-..|.
T Consensus 72 ~~~~~ 76 (106)
T 3m62_B 72 VSQKK 76 (106)
T ss_dssp CCC--
T ss_pred EcCCC
Confidence 87654
No 56
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.37 E-value=2.3e-12 Score=93.80 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=63.5
Q ss_pred ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (243)
Q Consensus 12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV 91 (243)
+.++|+|++ +.+....+++++++||.+||++|+..+|+||+.|+|++ .|+. .+|+.+|++|++++|++|||
T Consensus 2 s~m~i~vk~--~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~---~g~~----L~d~~tL~~~~i~~~~~l~l 72 (85)
T 3mtn_B 2 SHMQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKWSTLFL 72 (85)
T ss_dssp -CEEEEEEC--TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEE----CCTTSBTGGGTCCTTCEEEE
T ss_pred CeEEEEEEc--CCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE---CCEE----CCCCCCHHHcCCCCCCEEEE
Confidence 358899984 34567788999999999999999999999999999998 6765 36789999999999999999
Q ss_pred ee
Q 026104 92 ID 93 (243)
Q Consensus 92 vD 93 (243)
+=
T Consensus 73 ~~ 74 (85)
T 3mtn_B 73 LL 74 (85)
T ss_dssp EC
T ss_pred EE
Confidence 84
No 57
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.37 E-value=1.6e-12 Score=94.77 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=62.5
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
.++|+|++ +......+++++++||.+||++|+..+|+||+.|+|++ .|+. .+|+++|++|+++++++|||+
T Consensus 3 ~m~i~vk~--~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~---~g~~----L~d~~tL~~~~i~~~~~i~l~ 73 (85)
T 3n3k_B 3 HMRIVVKT--LMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIHNHSALYLL 73 (85)
T ss_dssp -CEEEEEC--GGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TBEE----CCTTCBTTTTTCCTTCEEEEE
T ss_pred eEEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE---CCeE----CCCCCCHHHCCCCCCCEEEEE
Confidence 47888884 34457789999999999999999999999999999999 5765 367889999999999999998
Q ss_pred e
Q 026104 93 D 93 (243)
Q Consensus 93 D 93 (243)
=
T Consensus 74 ~ 74 (85)
T 3n3k_B 74 L 74 (85)
T ss_dssp E
T ss_pred E
Confidence 5
No 58
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.37 E-value=7.5e-13 Score=99.51 Aligned_cols=78 Identities=17% Similarity=0.076 Sum_probs=61.7
Q ss_pred ccccccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCC
Q 026104 4 RLQQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP 83 (243)
Q Consensus 4 ~~~~~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i 83 (243)
+..++.....++|+|++ ++...+++++++||.+||++|+..+|+||++|+|++ .|+. | +|+++|++|++
T Consensus 10 ~~~~~~~~~~m~I~Vk~----g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~y~I 78 (93)
T 2l7r_A 10 HSSGLVPRGSMQLFVRA----QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLL---AGAP---L-EDEATLGQCGV 78 (93)
T ss_dssp ----------CEEEEES----SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEE---TTEE---C-CTTSBHHHHTC
T ss_pred cccCCCCCCcEEEEEEC----CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEE---CCEE---C-CCCCcHHHCCC
Confidence 34455666679999985 357788999999999999999999999999999998 5765 3 68899999999
Q ss_pred CCCcEEEEe
Q 026104 84 LQGYRLHVI 92 (243)
Q Consensus 84 ~dg~~IhVv 92 (243)
++|++|||+
T Consensus 79 ~~gstI~lv 87 (93)
T 2l7r_A 79 EALTTLEVA 87 (93)
T ss_dssp CSSCEEEEE
T ss_pred CCCCEEEEE
Confidence 999999997
No 59
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.37 E-value=1.1e-12 Score=100.84 Aligned_cols=79 Identities=16% Similarity=0.115 Sum_probs=67.8
Q ss_pred CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (243)
Q Consensus 10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I 89 (243)
+...++|+|++. .++...+++++++||.+||++|+..+|+|+++|||+| .|+. | +|+++|++|++++|++|
T Consensus 20 ~~~~m~I~Vk~~--~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~ygI~~g~ti 90 (106)
T 1ttn_A 20 SGYECQLRLRLS--TGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF---SGRP---L-TDKMKFEELKIPKDYVV 90 (106)
T ss_dssp -CCSEEEEEEET--TTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE---TTEE---C-CTTSHHHHCCCSSSCEE
T ss_pred CCCeEEEEEEcC--CCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE---CCEE---C-CCCCcHHHcCCCCCCEE
Confidence 344689999853 4467788999999999999999999999999999999 6765 3 68899999999999999
Q ss_pred EEeecCCC
Q 026104 90 HVIDLDPS 97 (243)
Q Consensus 90 hVvD~~p~ 97 (243)
||+...|.
T Consensus 91 ~lv~~~~~ 98 (106)
T 1ttn_A 91 QVIVSQPV 98 (106)
T ss_dssp EEECCCSS
T ss_pred EEEEeCCC
Confidence 99997653
No 60
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.37 E-value=1.4e-12 Score=98.77 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=63.9
Q ss_pred cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (243)
Q Consensus 9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~ 88 (243)
..+..++|+|++. .+....+++++++||.+||++|+..+|+||+.|||++ .|+. .+|+++|++|+|++|++
T Consensus 18 ~~~~~m~I~Vk~~--~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~----L~D~~tL~~~~i~~g~~ 88 (98)
T 4hcn_B 18 FQGRPMQIFVKTL--TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKEST 88 (98)
T ss_dssp ----CCEEEEEET--TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEE----CCTTCBSGGGTCCTTEE
T ss_pred CCCCeEEEEEEeC--CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE---CCEE----CCCCCcHHHCCCCCCCE
Confidence 4555799999854 4456788999999999999999999999999999999 6776 37889999999999999
Q ss_pred EEEee
Q 026104 89 LHVID 93 (243)
Q Consensus 89 IhVvD 93 (243)
|||+=
T Consensus 89 i~l~~ 93 (98)
T 4hcn_B 89 LHLVL 93 (98)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 99973
No 61
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.36 E-value=1.7e-12 Score=95.86 Aligned_cols=76 Identities=12% Similarity=0.226 Sum_probs=64.7
Q ss_pred cCCceEEEEEEeCCCCC-ceeEE-EcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCC
Q 026104 9 EGDESVLLRVTHSNLKS-FSADV-RFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG 86 (243)
Q Consensus 9 ~~~~~v~v~It~s~~~~-~~~e~-r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg 86 (243)
..+..++|+|++. .+ ....+ .+++++||.+||++|+..+|+||+.|+|++ .|+. | +|+++|.+|++++|
T Consensus 3 ~~~~~m~i~Vk~~--~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~---~gk~---L-~d~~tL~~~~i~~g 73 (89)
T 1wy8_A 3 SGSSGMWIQVRTI--DGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFY---RGKQ---L-ENGYTLFDYDVGLN 73 (89)
T ss_dssp CCSSCEEEEEEET--TCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE---TTEE---C-CSSSBHHHHTCCTT
T ss_pred CCCCcEEEEEEEC--CCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE---CCeE---C-CCCCCHHHCCCCCC
Confidence 3456799999854 33 36678 599999999999999999999999999999 5765 3 68899999999999
Q ss_pred cEEEEee
Q 026104 87 YRLHVID 93 (243)
Q Consensus 87 ~~IhVvD 93 (243)
++|||+=
T Consensus 74 ~~i~l~~ 80 (89)
T 1wy8_A 74 DIIQLLV 80 (89)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9999985
No 62
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.36 E-value=1.7e-12 Score=97.54 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=66.7
Q ss_pred CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (243)
Q Consensus 10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I 89 (243)
.+..|+|+|++. ....++++++++||.+||++|+..+|+|++.|||+| .|+. | +|+++|.+|++++|++|
T Consensus 14 ~~~~m~i~Vk~~---g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~---L-~D~~tL~~~gi~~g~~i 83 (96)
T 1wx8_A 14 SSRIIRVSVKTP---QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIF---TGKI---L-RDQDILSQRGILDGSTV 83 (96)
T ss_dssp CSCEEEEEEECS---SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE---TTEE---C-CTTSCHHHHTCCTTEEE
T ss_pred CCCcEEEEEEEC---CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCEE---C-CCcCCHHHCCCCCCCEE
Confidence 446799999864 457789999999999999999999999999999999 5765 3 68899999999999999
Q ss_pred EEeecC
Q 026104 90 HVIDLD 95 (243)
Q Consensus 90 hVvD~~ 95 (243)
||+...
T Consensus 84 ~l~~~~ 89 (96)
T 1wx8_A 84 HVVVRS 89 (96)
T ss_dssp ECCBCC
T ss_pred EEEEeC
Confidence 998754
No 63
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.35 E-value=3e-12 Score=91.03 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=61.2
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++|+|++. .+...++++++++||.+||++|+..+|+|++.|+|.+ .|+. | +|+++|++|++.+|++||++=
T Consensus 1 M~i~vk~~--~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~---~g~~---L-~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3a9j_A 1 MQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQRESTLHLVL 71 (76)
T ss_dssp CEEEEEET--TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTCBTGGGTCCTTCEEEEEE
T ss_pred CEEEEEcC--CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCeE---C-CCCCcHHHcCCCCCCEEEEEE
Confidence 46788753 3456788999999999999999999999999999999 5765 3 678999999999999999974
No 64
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.35 E-value=5e-12 Score=98.10 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=64.2
Q ss_pred ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (243)
Q Consensus 12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV 91 (243)
..++|+|++ +.++...+++++++||.+||++|+..+|+||+.|||++ .|+. .+|+++|++|++++|++||+
T Consensus 34 ~~m~I~Vk~--~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~----L~D~~tL~~~gI~~gs~I~l 104 (111)
T 3vdz_A 34 LAMQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHL 104 (111)
T ss_dssp GCEEEEEEC--SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE----CCTTSBTTTTTCCTTCEEEE
T ss_pred ccEEEEEEe--CCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE---CCEE----CCCCCcHHHCCCCCCCEEEE
Confidence 468999984 45567788999999999999999999999999999999 6765 36889999999999999999
Q ss_pred ee
Q 026104 92 ID 93 (243)
Q Consensus 92 vD 93 (243)
+=
T Consensus 105 ~~ 106 (111)
T 3vdz_A 105 VL 106 (111)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 65
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.35 E-value=2.2e-12 Score=96.58 Aligned_cols=77 Identities=17% Similarity=0.050 Sum_probs=64.9
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHh--CCCCCceEEEEEcCCCCeeeecCCCCCccCCC--CCCCC
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKC--GTSVNSMSLELYDDTNTKVAALTDNSRPLGFY--SPLQG 86 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~t--Gipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y--~i~dg 86 (243)
.+.|+|+|++.+-.....++.+++++||.+||++|+..+ |+||++|||++ .|+. .+|+.+|++| +++++
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~---~Gk~----L~D~~tL~~~~~~i~~~ 77 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIY---SGKL----LLDHQCLRDLLPKQEKR 77 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEE---TTEE----CCSSSCHHHHSCSSSCS
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEE---CCEE----CcCcCCHHHHhcCCCCC
Confidence 456899998654433357777889999999999999999 99999999999 6876 3678999999 99999
Q ss_pred cEEEEeec
Q 026104 87 YRLHVIDL 94 (243)
Q Consensus 87 ~~IhVvD~ 94 (243)
++||++-.
T Consensus 78 ~~i~lv~~ 85 (93)
T 1wgd_A 78 HVLHLVCN 85 (93)
T ss_dssp EEEEEECC
T ss_pred CEEEEEeC
Confidence 99999863
No 66
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.35 E-value=3.6e-12 Score=98.69 Aligned_cols=76 Identities=17% Similarity=0.131 Sum_probs=65.0
Q ss_pred CceEEEEEEeCCC-CCceeEEEcCC-CCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104 11 DESVLLRVTHSNL-KSFSADVRFPL-QMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (243)
Q Consensus 11 ~~~v~v~It~s~~-~~~~~e~r~~~-~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~ 88 (243)
...|+|+|++.+. .++..++++++ ++||.+||++|+..+||||++|+|++ .|+. .+|+.+|++|+|++|++
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~---~Gk~----L~D~~tL~~y~I~~g~~ 97 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG---KAGF----LKDNMSLAHYNVGAGEI 97 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC---SSSB----CCTTSBTTTTTCSSSCE
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE---CCEE----CCCCCcHHHCCCCCCCE
Confidence 3569999985421 44577899998 99999999999999999999999998 5764 47889999999999999
Q ss_pred EEEee
Q 026104 89 LHVID 93 (243)
Q Consensus 89 IhVvD 93 (243)
|||+=
T Consensus 98 l~l~~ 102 (111)
T 1we6_A 98 LTLSL 102 (111)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 99974
No 67
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.34 E-value=7.3e-12 Score=99.40 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=66.0
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
+..|+|+|++. ....++++++++||.+||++|+..+|||+++|||+| .|+. | +|+++|++|+|++|++||
T Consensus 30 ~~~m~I~Vk~~---g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~dygI~~gstI~ 99 (125)
T 1j8c_A 30 PKIIKVTVKTP---KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIF---AGKI---L-KDQDTLIQHGIHDGLTVH 99 (125)
T ss_dssp CCCEEEEEECS---SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE---TTEE---E-STTSCGGGTTCSSSEEEE
T ss_pred CCcEEEEEEeC---CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEE---CCEE---c-CCCCCHHHcCCCCCCEEE
Confidence 45799999854 457789999999999999999999999999999999 5775 3 678999999999999999
Q ss_pred EeecC
Q 026104 91 VIDLD 95 (243)
Q Consensus 91 VvD~~ 95 (243)
|+...
T Consensus 100 lv~~~ 104 (125)
T 1j8c_A 100 LVIKR 104 (125)
T ss_dssp EEEC-
T ss_pred EEecc
Confidence 99864
No 68
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.34 E-value=6e-12 Score=93.11 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=62.8
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
-+.+.+.++. .+...++++++++||.+||++|+..+|+||+.|||++ .|+. | +|+++|++|++++|++|+
T Consensus 10 ~~~~~~~~~~---~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~---L-~D~~tL~~~gi~~g~~l~ 79 (85)
T 2kd0_A 10 HSTIKLTVKF---GGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIF---KGKV---L-VETSTLKQSDVGSGAKLM 79 (85)
T ss_dssp CCCEEEEEEE---TTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEE---TTEE---C-CTTCBTTTTTCCTTEEEE
T ss_pred CCcEEEEEEE---CCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE---CCeE---C-CCcCCHHHCCCCCCCEEE
Confidence 3456666663 3456788999999999999999999999999999998 5765 3 788999999999999999
Q ss_pred Eeec
Q 026104 91 VIDL 94 (243)
Q Consensus 91 VvD~ 94 (243)
|+.+
T Consensus 80 l~~s 83 (85)
T 2kd0_A 80 LMAS 83 (85)
T ss_dssp EECC
T ss_pred EEEe
Confidence 9874
No 69
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.34 E-value=1.8e-12 Score=100.01 Aligned_cols=78 Identities=12% Similarity=0.171 Sum_probs=63.2
Q ss_pred eEEEEEEeCCCCCceeEEEcC-CCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCC-----------eeeecCCCCCccCC
Q 026104 13 SVLLRVTHSNLKSFSADVRFP-LQMSVESVKDKLWRKCGTSVNSMSLELYDDTNT-----------KVAALTDNSRPLGF 80 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~-~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~-----------~~~~l~~d~~~L~~ 80 (243)
.|.|+|++.+ +.. .+.++ +++||.+||+||+.++||||++|+|++. ++ .+..+.+|+++|++
T Consensus 7 ~M~irvrs~~--G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~---~~~~~~k~~~~~~~l~~~l~d~~tL~~ 80 (107)
T 1wf9_A 7 GTMLRVRSRD--GLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTN---RNLLLAKSPSDFLAFTDMADPNLRISS 80 (107)
T ss_dssp CEEEEEECSS--CEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSS---GGGGTCCSHHHHTTCCSSCCTTCBGGG
T ss_pred eEEEEEECCC--CCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEEC---CccccccCccccccccccCCCCCCHHH
Confidence 3779998443 333 46688 9999999999999999999999999984 44 22223689999999
Q ss_pred CCCCCCcEEEEeecCC
Q 026104 81 YSPLQGYRLHVIDLDP 96 (243)
Q Consensus 81 y~i~dg~~IhVvD~~p 96 (243)
||+++|++|||++...
T Consensus 81 ~gi~~G~~L~l~~~~~ 96 (107)
T 1wf9_A 81 LNLAHGSMVYLAYEGE 96 (107)
T ss_dssp TCCCTTCEEECCCSSC
T ss_pred CCCCCCCEEEEEeCCC
Confidence 9999999999999753
No 70
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.34 E-value=6.4e-12 Score=103.90 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=83.5
Q ss_pred cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (243)
Q Consensus 9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~ 88 (243)
.+...|+|+|++ +.++...+++++++||.+||++|+..+|+|+++|+|.+ .|+. .+|+.+|++|++++|++
T Consensus 16 ~~~~~m~i~Vk~--~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~---~g~~----L~d~~tL~~~~i~~~~~ 86 (172)
T 3u30_A 16 PRGSHMQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKEST 86 (172)
T ss_dssp ---CCEEEEEEE--TTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE----CCTTCBTGGGTCCTTCE
T ss_pred CCCCcEEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE---CCcc----ccccCCHhHcCCcccce
Confidence 445569999984 45567789999999999999999999999999999998 5765 37899999999999999
Q ss_pred EEEeecCCCcccCCCcccc-CCcceeeecCHHHHhcchhhHHHHHHHhh
Q 026104 89 LHVIDLDPSSVTSGGWLED-TSLVEKYTISEEEYSKRDGTFRKFKEKVL 136 (243)
Q Consensus 89 IhVvD~~p~s~~~~~~l~d-~s~veky~msee~Y~~r~dtvr~~kk~~~ 136 (243)
||++-.-+..+.-. +.. ..+.-.++++ ..+||...|++..
T Consensus 87 l~l~~~~~gg~~i~--Vk~~~g~~~~l~v~------~~~tV~~lK~~I~ 127 (172)
T 3u30_A 87 LHLVLRLRGGMQIF--VKTLTGKTITLEVE------PSDTIENVKAKIQ 127 (172)
T ss_dssp EEEEECCCCCEEEE--EEESSCCEEEEEEC------TTCBHHHHHHHHH
T ss_pred eeeeecccccccce--eecccCcceeEEec------CCCCHHHHHHHHH
Confidence 99997654332211 111 1232344554 4899999999853
No 71
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.33 E-value=4e-12 Score=98.27 Aligned_cols=77 Identities=16% Similarity=0.142 Sum_probs=62.7
Q ss_pred ceEEEEEEeCCCC--CceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCC-CCCcE
Q 026104 12 ESVLLRVTHSNLK--SFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP-LQGYR 88 (243)
Q Consensus 12 ~~v~v~It~s~~~--~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i-~dg~~ 88 (243)
+-|++.|+-.++. .....+.+.|++||++||++|+..+||||+.|||++ +|+ +.+|+++|.+||| ++|++
T Consensus 21 ~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~---ggk----ll~D~~TL~~ygI~~~G~t 93 (105)
T 4dbg_A 21 QDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVI---GQR----LARDQETLHSHGVRQNGDS 93 (105)
T ss_dssp CCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTE----EECTTCBTGGGTCCSTTCE
T ss_pred CcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEec---cCe----EccCcCcHHHcCCCCCCCE
Confidence 3455555444554 367889999999999999999999999999999887 454 3588999999999 59999
Q ss_pred EEEeecC
Q 026104 89 LHVIDLD 95 (243)
Q Consensus 89 IhVvD~~ 95 (243)
||++=..
T Consensus 94 ~hL~l~~ 100 (105)
T 4dbg_A 94 AYLYLLS 100 (105)
T ss_dssp EEEEECC
T ss_pred EEEEEEe
Confidence 9997654
No 72
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.33 E-value=6.1e-12 Score=94.41 Aligned_cols=79 Identities=18% Similarity=0.199 Sum_probs=66.1
Q ss_pred CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (243)
Q Consensus 10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I 89 (243)
.+..|+|+|++ +.++..++++++++||.+||++|+..+ +++|||+| .|+. |.+++++|++|++++|++|
T Consensus 4 ~~~~m~i~Vk~--~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~---~Gk~---L~D~~~tL~~y~i~~g~~i 72 (95)
T 1wia_A 4 GSSGINVRLKF--LNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIY---QGRL---LQDPARTLSSLNITNNCVI 72 (95)
T ss_dssp CCCSEEEEEEE--TTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEE---TTEE---CCCSSCBTTTTTCCTTEEE
T ss_pred CCCeEEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEE---CCEE---ccCCcCCHHHcCCCCCCEE
Confidence 45569999984 345577899999999999999999998 99999998 6775 4344499999999999999
Q ss_pred EEeecCCCcc
Q 026104 90 HVIDLDPSSV 99 (243)
Q Consensus 90 hVvD~~p~s~ 99 (243)
||+...|.+.
T Consensus 73 ~l~~~~~~~~ 82 (95)
T 1wia_A 73 HCHRSPPGAA 82 (95)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 9999877554
No 73
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.33 E-value=1.3e-12 Score=97.76 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=62.9
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHH-HhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCC-CCCcEEE
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKL-WRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP-LQGYRLH 90 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KL-e~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i-~dg~~Ih 90 (243)
+++|+|++.....+..+..++++.||.+||++| +..+|+||++|||+| .|+. .+|+.+|++|++ ++|++||
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~---~Gk~----L~D~~tL~~y~I~~~~stl~ 73 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLL---KGKV----LHDNLFLSDLKVTPANSTIT 73 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEE---TTEE----CCTTCBHHHHCCCGGGCEEE
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEE---CCEE----CcCcCCHHHcCCCCCCCEEE
Confidence 378999855443345555577999999999999 999999999999999 7876 378999999999 7999999
Q ss_pred Eeec
Q 026104 91 VIDL 94 (243)
Q Consensus 91 VvD~ 94 (243)
|.=+
T Consensus 74 v~~~ 77 (87)
T 2lxa_A 74 VMIK 77 (87)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 9864
No 74
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.32 E-value=4.1e-12 Score=94.32 Aligned_cols=71 Identities=21% Similarity=0.287 Sum_probs=62.0
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++|+|+. +.++..++++++++||++||++|+..+|+||+.|||++ .|+. | +|+++|++|++++|++||++=
T Consensus 10 ~~i~v~~--~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~---L-~D~~tL~~~gi~~g~~i~l~~ 80 (88)
T 1sif_A 10 LQLFIKT--LTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVL 80 (88)
T ss_dssp CEEEEEE--TTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE---TTEE---C-CTTSBSGGGTCCTTCEEEEEC
T ss_pred eEEEEEe--CCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCCCcHHHcCCCCCCEEEEEE
Confidence 6777763 45567889999999999999999999999999999998 5775 3 678999999999999999974
No 75
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.32 E-value=4.2e-12 Score=95.07 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=62.3
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++|+|++. .+...++++++++||.+||++|+..+|+|++.|+|++ .|+. .+|+.+|++|++++|++|||+=
T Consensus 2 m~i~vk~~--~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~---~G~~----L~d~~tL~~~~i~~~~~i~l~~ 72 (96)
T 3k9o_B 2 MQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLVL 72 (96)
T ss_dssp CEEEEEET--TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE----CCTTSBTGGGTCCTTCEEEEEE
T ss_pred cEEEEEeC--CCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE---CCEE----CCCCCcHHHcCCCCCCEEEEEE
Confidence 57888754 4457788999999999999999999999999999998 6765 3688899999999999999985
No 76
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.32 E-value=1.3e-11 Score=95.50 Aligned_cols=75 Identities=20% Similarity=0.238 Sum_probs=65.0
Q ss_pred CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (243)
Q Consensus 10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I 89 (243)
....++|+|++ +.++..++++++++||.+||++|+..+|+|++.|+|++ .|+. | +|+++|++|++++|++|
T Consensus 32 ~~~~m~I~Vk~--~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~gI~~gs~I 102 (111)
T 2ojr_A 32 ELLAMQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTL 102 (111)
T ss_dssp GSSCEEEEEEC--SSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE---TTEE---C-CSSCBTTTTTCCTTCEE
T ss_pred CCCeEEEEEEc--CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE---CCEE---C-CCCCcHHHcCCCCCCEE
Confidence 34579999984 34457788999999999999999999999999999998 5765 3 67899999999999999
Q ss_pred EEee
Q 026104 90 HVID 93 (243)
Q Consensus 90 hVvD 93 (243)
||+=
T Consensus 103 ~l~~ 106 (111)
T 2ojr_A 103 HLVL 106 (111)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9974
No 77
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.32 E-value=4.8e-12 Score=96.49 Aligned_cols=78 Identities=9% Similarity=0.150 Sum_probs=66.9
Q ss_pred ccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104 8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY 87 (243)
Q Consensus 8 ~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~ 87 (243)
...+..|+|+|++.+ ++ .++++++++||.+||++|+..+|+||+.|||++ .|+. .+|+++|++|++++|+
T Consensus 17 ~~~~~~m~I~Vk~~~--g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~----L~D~~tL~~ygI~~gs 86 (100)
T 1yqb_A 17 RGSPHLIKVTVKTPK--DK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF---AGKI----LKDPDSLAQCGVRDGL 86 (100)
T ss_dssp SCCTTEEEEEEECSS--CE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTSBHHHHTCCTTC
T ss_pred CCCCCeEEEEEEcCC--Cc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE---CCEE----CCCcCcHHHCCCCCCC
Confidence 445667999998543 33 588999999999999999999999999999998 5765 3688999999999999
Q ss_pred EEEEeecC
Q 026104 88 RLHVIDLD 95 (243)
Q Consensus 88 ~IhVvD~~ 95 (243)
+|||+...
T Consensus 87 tI~l~~r~ 94 (100)
T 1yqb_A 87 TVHLVIKR 94 (100)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcC
Confidence 99999754
No 78
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.31 E-value=1.1e-11 Score=99.21 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=79.5
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++|+|++. .+...++++++++||.+||++|+..+|+||+.|+|.+ .|+. | +|+.+|++|++.+|++|||+.
T Consensus 1 M~i~vk~~--~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~---~g~~---L-~d~~tL~~~~i~~~~~l~l~~ 71 (152)
T 3b08_A 1 MQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVL 71 (152)
T ss_dssp CEEEEEET--TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEEE
T ss_pred CEEEEEeC--CCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEE---CCeE---C-cCcccHHHhccCCCCeeEEEe
Confidence 36778743 3457789999999999999999999999999999999 5765 3 688999999999999999999
Q ss_pred cCCCcccCCCccccC-CcceeeecCHHHHhcchhhHHHHHHHh
Q 026104 94 LDPSSVTSGGWLEDT-SLVEKYTISEEEYSKRDGTFRKFKEKV 135 (243)
Q Consensus 94 ~~p~s~~~~~~l~d~-s~veky~msee~Y~~r~dtvr~~kk~~ 135 (243)
..+..+.-. +... .+.-.++++ ..+||...|++.
T Consensus 72 ~~~~~~~i~--Vk~~~g~~~~~~v~------~~~tv~~lK~~i 106 (152)
T 3b08_A 72 RLRGGMQIF--VKTLTGKTITLEVE------PSDTIENVKAKI 106 (152)
T ss_dssp CCTTCEEEE--EEESSSCEEEEEEC------TTCBHHHHHHHH
T ss_pred eccccccee--eeecCCCEEEEEeC------CCCcHHHHHHHH
Confidence 766432111 1111 122234443 489999999875
No 79
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.30 E-value=4e-12 Score=97.18 Aligned_cols=77 Identities=14% Similarity=0.075 Sum_probs=61.2
Q ss_pred cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhH-hCCCC-CceEEEEEcCCCCeeeecCCCCCccCCC--CCC
Q 026104 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRK-CGTSV-NSMSLELYDDTNTKVAALTDNSRPLGFY--SPL 84 (243)
Q Consensus 9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~-tGipp-~~qrL~l~~~~g~~~~~l~~d~~~L~~y--~i~ 84 (243)
...+.|+|+|+..+.......+.+++++||.+||++|+.. +|+|| ++|||+| .|+.+ +|+++|++| +++
T Consensus 19 ~~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy---~Gk~L----~D~~tL~~y~~~I~ 91 (99)
T 2kdb_A 19 FQGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVY---SGRLL----PDHLQLKDILRKQD 91 (99)
T ss_dssp ----CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEE---TTEEE----CTTSBTHHHHTTTC
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEE---CCEEC----CCCCCHHHHhcCCC
Confidence 3445699999854443224577789999999999999985 67775 9999999 78873 688999999 999
Q ss_pred CCcEEEEe
Q 026104 85 QGYRLHVI 92 (243)
Q Consensus 85 dg~~IhVv 92 (243)
+|++||++
T Consensus 92 ~~~tihLv 99 (99)
T 2kdb_A 92 EYHMVHLV 99 (99)
T ss_dssp SEEEEEEC
T ss_pred CCCEEEeC
Confidence 99999986
No 80
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.29 E-value=8.3e-12 Score=95.76 Aligned_cols=75 Identities=11% Similarity=0.192 Sum_probs=65.0
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
+..|+|+|++.. .+ .++++++++||.+||++|+..+|+|++.|||+| .|+. | +|+++|.+|+|++|++||
T Consensus 15 ~~~m~I~Vk~~~--g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~gi~~g~~i~ 84 (106)
T 1wx7_A 15 PHLIKVTVKTPK--DK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF---AGKI---L-KDPDSLAQCGVRDGLTVH 84 (106)
T ss_dssp SSEEEEEEECSS--CE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEE---TTEE---C-CTTSCHHHHTCCTTEEEE
T ss_pred CceEEEEEEeCC--Cc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCcCcHHHcCCCCCCEEE
Confidence 567999998643 33 588999999999999999999999999999998 5765 3 688999999999999999
Q ss_pred EeecC
Q 026104 91 VIDLD 95 (243)
Q Consensus 91 VvD~~ 95 (243)
|+...
T Consensus 85 l~~~~ 89 (106)
T 1wx7_A 85 LVIKR 89 (106)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99753
No 81
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.28 E-value=7.5e-12 Score=90.44 Aligned_cols=72 Identities=11% Similarity=0.186 Sum_probs=63.3
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
.|+|+|++ +.++...+++.++.||.+||++++..+|+||++|||+| +|+. | +|+.+|++|++++|++||++
T Consensus 3 ~m~i~vk~--~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~---~G~~---L-~d~~tl~~~~i~~~~~i~l~ 73 (79)
T 2uyz_B 3 YIKLKVIG--QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF---EGQR---I-ADNHTPKELGMEEEDVIEVY 73 (79)
T ss_dssp EEEEEEEC--TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTCCHHHHTCCTTEEEEEE
T ss_pred eEEEEEEC--CCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE---CCEE---e-CCCCCHHHcCCCCCCEEEEE
Confidence 48899984 44556778899999999999999999999999999999 7876 3 68899999999999999997
Q ss_pred e
Q 026104 93 D 93 (243)
Q Consensus 93 D 93 (243)
=
T Consensus 74 ~ 74 (79)
T 2uyz_B 74 Q 74 (79)
T ss_dssp E
T ss_pred E
Confidence 4
No 82
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.28 E-value=8.9e-12 Score=94.40 Aligned_cols=76 Identities=12% Similarity=0.125 Sum_probs=64.9
Q ss_pred cCCceEEEEEEeCCCCCcee-EEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104 9 EGDESVLLRVTHSNLKSFSA-DVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY 87 (243)
Q Consensus 9 ~~~~~v~v~It~s~~~~~~~-e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~ 87 (243)
.++..|+|+|++. +... ++.++++.||.+||++|+..+||||++|||++ .|+. | +|+ +|.+|+|++|.
T Consensus 3 ~~~~~m~i~Vk~~---g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~---~Gk~---L-~D~-tL~~~~I~~g~ 71 (96)
T 1wgg_A 3 SGSSGYSVTVKWG---KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMV---KGGT---L-KDD-DWGNIKMKNGM 71 (96)
T ss_dssp SCCCEEEEEEEET---TEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEE---TTEE---C-CSS-CCCSCCCCSSC
T ss_pred CCCcEEEEEEEEC---CEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCcC---C-CCC-CHHHCCCCCCC
Confidence 3456799999864 3466 68899999999999999999999999999998 6776 3 456 99999999999
Q ss_pred EEEEeecC
Q 026104 88 RLHVIDLD 95 (243)
Q Consensus 88 ~IhVvD~~ 95 (243)
+||++-+.
T Consensus 72 ~i~l~~~~ 79 (96)
T 1wgg_A 72 TVLMMGSA 79 (96)
T ss_dssp EEECCCCC
T ss_pred EEEEEecc
Confidence 99998754
No 83
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.28 E-value=1.3e-11 Score=93.14 Aligned_cols=74 Identities=19% Similarity=0.211 Sum_probs=63.4
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++|+|+.. .+...+++++++.||.+||++|+..+|+||+.|+|++ .|+. | +|+++|++|++++|++|||+.
T Consensus 1 M~I~Vk~~--~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~---~Gk~---L-~D~~tL~~~gi~~g~~i~l~~ 71 (98)
T 1yx5_B 1 MQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVL 71 (98)
T ss_dssp CEEEEEET--TSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEEE
T ss_pred CEEEEEeC--CCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCCCCHHHcCCCCCCEEEEEE
Confidence 46788743 3456788999999999999999999999999999998 6765 3 678999999999999999988
Q ss_pred cCC
Q 026104 94 LDP 96 (243)
Q Consensus 94 ~~p 96 (243)
..+
T Consensus 72 ~~~ 74 (98)
T 1yx5_B 72 RLR 74 (98)
T ss_dssp CCC
T ss_pred eCC
Confidence 654
No 84
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.28 E-value=9.6e-12 Score=95.79 Aligned_cols=82 Identities=18% Similarity=0.166 Sum_probs=66.8
Q ss_pred ccCCceEEEEEEeCCC-CCceeEEEcCC---------CCCHHHHHHHHHhHh--CCCCCc-eEEEEEcCCCCeeeecCCC
Q 026104 8 IEGDESVLLRVTHSNL-KSFSADVRFPL---------QMSVESVKDKLWRKC--GTSVNS-MSLELYDDTNTKVAALTDN 74 (243)
Q Consensus 8 ~~~~~~v~v~It~s~~-~~~~~e~r~~~---------~~TV~~LK~KLe~~t--Gipp~~-qrL~l~~~~g~~~~~l~~d 74 (243)
.++.+.|+|+|++.+. .....++.|++ ++||.+||++|+..+ |+|+++ |||+| .|+. | +|
T Consensus 7 ~~~~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~---~Gk~---L-~D 79 (107)
T 1x1m_A 7 GMSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIY---CGRK---L-KD 79 (107)
T ss_dssp CCCCCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEE---TTEE---C-CT
T ss_pred CccCCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEE---CCeE---C-CC
Confidence 3555668999997654 11355677555 599999999999999 999999 99998 6876 3 68
Q ss_pred CCccCCCCCCCCcEEEEeecCC
Q 026104 75 SRPLGFYSPLQGYRLHVIDLDP 96 (243)
Q Consensus 75 ~~~L~~y~i~dg~~IhVvD~~p 96 (243)
+++|.+|++++|++||++...+
T Consensus 80 ~~tL~~y~i~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 80 DQTLDFYGIQPGSTVHVLRKSW 101 (107)
T ss_dssp TCBHHHHTCCTTCEEEEEESSC
T ss_pred CCcHHHcCCCCCCEEEEEeCCC
Confidence 8999999999999999998754
No 85
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.27 E-value=2.6e-11 Score=98.68 Aligned_cols=108 Identities=18% Similarity=0.176 Sum_probs=81.7
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++|+|++ ++++...++++++.||.+||++|+..+|+||++|||+++. .|+. | +|+.+|++|++++|++||++-
T Consensus 3 m~i~vk~--~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~-~g~~---L-~d~~tL~~y~i~~~~~l~l~~ 75 (159)
T 3rt3_B 3 WDLTVKM--LAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHP-SGVA---L-QDRVPLASQGLGPGSTVLLVV 75 (159)
T ss_dssp CEEEEEE--TTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEET-TCCB---C-CTTSCGGGGTCCTTCEEEEEE
T ss_pred eEEEEEE--CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcC-CCCC---C-CCCCCHHHcCCCCCCEEEEEc
Confidence 6788874 4456778999999999999999999999999999999542 2655 3 899999999999999999998
Q ss_pred cC-CCcccCCCccccC-CcceeeecCHHHHhcchhhHHHHHHHhh
Q 026104 94 LD-PSSVTSGGWLEDT-SLVEKYTISEEEYSKRDGTFRKFKEKVL 136 (243)
Q Consensus 94 ~~-p~s~~~~~~l~d~-s~veky~msee~Y~~r~dtvr~~kk~~~ 136 (243)
.. |..+.-. .... .+.-.++++. .+||...|++..
T Consensus 76 ~~~~~~m~i~--vk~~~g~~~~~~v~~------~~tV~~lK~~i~ 112 (159)
T 3rt3_B 76 DKSDEPLSIL--VRNNKGRSSTYEVRL------TQTVAHLKQQVS 112 (159)
T ss_dssp CCCCCCEEEE--EECTTSCEEEEEECT------TSBHHHHHHHHH
T ss_pred cCCCCcEEEE--EECCCCCEEEEEeCC------CCCHHHHHHHHH
Confidence 74 4332111 1121 2333456654 899999998753
No 86
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.27 E-value=1e-11 Score=93.92 Aligned_cols=75 Identities=12% Similarity=0.192 Sum_probs=65.1
Q ss_pred CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (243)
Q Consensus 10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I 89 (243)
....|+|+|++ +.++...+++.++.||.+||++|+..+|||+++|||+| +|+. | .|+.+|++|++++|++|
T Consensus 18 ~~~~m~I~Vk~--~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif---~Gk~---L-~d~~tl~dy~i~~g~~I 88 (97)
T 1wyw_B 18 EGEYIKLKVIG--QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF---EGQR---I-ADNHTPKELGMEEEDVI 88 (97)
T ss_dssp -CCEEEEEEEC--TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTCCHHHHTCCTTCEE
T ss_pred CCCcEEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE---CCeE---c-CCCCCHHHCCCCCCCEE
Confidence 44569999984 45567778899999999999999999999999999999 7876 3 68899999999999999
Q ss_pred EEee
Q 026104 90 HVID 93 (243)
Q Consensus 90 hVvD 93 (243)
||+=
T Consensus 89 ~l~~ 92 (97)
T 1wyw_B 89 EVYQ 92 (97)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9974
No 87
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.26 E-value=2.3e-11 Score=95.70 Aligned_cols=60 Identities=10% Similarity=-0.070 Sum_probs=55.3
Q ss_pred eeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCC-------CcEEEEee
Q 026104 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQ-------GYRLHVID 93 (243)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~d-------g~~IhVvD 93 (243)
.+.+.+.++.||.+||+||+.++||||++|||++ +|+. ++|+++|++|||++ +++||++=
T Consensus 13 TI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~---~Gk~----LeD~kTL~dy~I~~~ta~~q~~atl~Lvl 79 (118)
T 4ajy_B 13 TIFTDAKESSTVFELKRIVEGILKRPPDEQRLYK---DDQL----LDDGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE---TTEE----CCTTSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred EEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEe---CCeE----CCCcCCHHHcCCCcCcccCCCCCEEEEEE
Confidence 6777889999999999999999999999999998 6765 48999999999999 99999984
No 88
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.26 E-value=5.1e-12 Score=97.71 Aligned_cols=75 Identities=17% Similarity=0.167 Sum_probs=65.3
Q ss_pred ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCC---------------CceEEEEEcCCCCeeeecCCCCC
Q 026104 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSV---------------NSMSLELYDDTNTKVAALTDNSR 76 (243)
Q Consensus 12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp---------------~~qrL~l~~~~g~~~~~l~~d~~ 76 (243)
..++|+|+ .+++...++.++++.||.+||++|+..+|+|| ++|+|++ .|+. |.+|++
T Consensus 6 ~~M~I~Vk--~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~---~Gk~---L~dD~~ 77 (105)
T 1v2y_A 6 SGMTVRVC--KMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS---AGEK---LTEDRK 77 (105)
T ss_dssp CSEEEEEE--CSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEES---SSCE---ECCSSS
T ss_pred CcEEEEEE--ecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEe---CCcC---ccCCcC
Confidence 34899998 46667888999999999999999999999998 4679997 7887 557889
Q ss_pred ccCCCCCCCCcEEEEeec
Q 026104 77 PLGFYSPLQGYRLHVIDL 94 (243)
Q Consensus 77 ~L~~y~i~dg~~IhVvD~ 94 (243)
+|.+|+|++|++||++-.
T Consensus 78 tL~dygI~~g~~l~lv~~ 95 (105)
T 1v2y_A 78 KLRDYGIRNRDEVSFIKK 95 (105)
T ss_dssp BHHHHTCCSSEEEEEEEC
T ss_pred CHHHcCCCCCCEEEEEeh
Confidence 999999999999999863
No 89
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.26 E-value=2.6e-11 Score=94.61 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=64.5
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
.+|+|+ .+.+...++++++++||.+||++|+..+|+||+.|+|++ .|+. | +|+++|++|++++|++|||+.
T Consensus 10 ~~i~vk--~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~ygI~~gstI~l~~ 80 (114)
T 2kdi_A 10 FQIFAK--TLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIW---AGKQ---L-EDGRTLSDYNIQRESTLHLVL 80 (114)
T ss_dssp CEEEEE--ETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTCBTTTTTCCSSCEEEEEE
T ss_pred EEEEEE--eCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE---CCEE---C-CCCCcHHHCCCCCCCEEEEEE
Confidence 577776 355567889999999999999999999999999999998 5765 3 688999999999999999998
Q ss_pred cCC
Q 026104 94 LDP 96 (243)
Q Consensus 94 ~~p 96 (243)
..+
T Consensus 81 ~~~ 83 (114)
T 2kdi_A 81 RLR 83 (114)
T ss_dssp CCC
T ss_pred EcC
Confidence 643
No 90
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.24 E-value=8.7e-12 Score=93.11 Aligned_cols=76 Identities=14% Similarity=0.127 Sum_probs=64.8
Q ss_pred CCceEEEEEEeCCCCCceeEE-EcCCCCCHHHHHHHHHhHhCCCCCceEEE---EEcCCCCeeeecCCCCCccCCCCCCC
Q 026104 10 GDESVLLRVTHSNLKSFSADV-RFPLQMSVESVKDKLWRKCGTSVNSMSLE---LYDDTNTKVAALTDNSRPLGFYSPLQ 85 (243)
Q Consensus 10 ~~~~v~v~It~s~~~~~~~e~-r~~~~~TV~~LK~KLe~~tGipp~~qrL~---l~~~~g~~~~~l~~d~~~L~~y~i~d 85 (243)
.+..|+|+|++. +....+ .++++.||.+||++|+..+||||++|||+ + .|+. | +|+.+|++|+|++
T Consensus 4 ~~~~m~i~Vk~~---g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~---~Gk~---L-~D~~~L~~~~i~~ 73 (90)
T 1v5t_A 4 GSSGLPIIVKWG---GQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKV---KGKP---A-ENDVKLGALKLKP 73 (90)
T ss_dssp CCCSCCEEEEET---TEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEE---TTEE---C-CTTSBHHHHTCCT
T ss_pred CCceEEEEEEEC---CEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeecc---CCcC---c-CCCCCHHHcCCCC
Confidence 345688889853 346778 89999999999999999999999999999 7 5765 3 6789999999999
Q ss_pred CcEEEEeecC
Q 026104 86 GYRLHVIDLD 95 (243)
Q Consensus 86 g~~IhVvD~~ 95 (243)
|.+||++-+.
T Consensus 74 g~~l~l~~~~ 83 (90)
T 1v5t_A 74 NTKIMMMGTR 83 (90)
T ss_dssp TEEEEEECCC
T ss_pred CCEEEEEecC
Confidence 9999998653
No 91
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.88 E-value=7.8e-13 Score=94.74 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=59.6
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
++|+|++ +.+...++.+++++||.+||++|+..+|+||+.|+|++ .|+. | +|+++|++|++++|++||++
T Consensus 1 M~i~Vk~--~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~---~gk~---L-~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3b1l_X 1 MIVFVRF--NSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIF---AGKE---L-PNHLTVQNCDLEQQSIVHIV 70 (76)
Confidence 4577763 33456678899999999999999999999999999998 5765 3 67899999999999999987
No 92
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.21 E-value=3.2e-11 Score=100.31 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=63.2
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++|+|++ +.++...+++++++||.+||++|+..+|+||++|||++ .|+. .+|+++|++|++++|++||++=
T Consensus 1 MqI~Vk~--~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~----L~D~~tL~~y~I~~gstI~Lvl 71 (169)
T 3l0w_B 1 MQIFVKT--LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLVL 71 (169)
T ss_dssp CEEEEEE--TTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEE---TTEE----CCTTSBGGGGTCCTTCEEEEEE
T ss_pred CEEEEEe--CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEE---CCcc----ccCcCcHHHcCCCCCCEEEEEE
Confidence 4678874 45567889999999999999999999999999999999 6876 3788999999999999999985
Q ss_pred c
Q 026104 94 L 94 (243)
Q Consensus 94 ~ 94 (243)
.
T Consensus 72 r 72 (169)
T 3l0w_B 72 R 72 (169)
T ss_dssp C
T ss_pred E
Confidence 4
No 93
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.21 E-value=5.1e-11 Score=96.92 Aligned_cols=74 Identities=20% Similarity=0.183 Sum_probs=63.6
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
.+.++|+|+ +++++...+.++++.||.+||++|+..+|+||++|+|++ .|+. .+|+.+|++|++++|++||
T Consensus 79 ~~~m~i~vk--~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~G~~----L~d~~tL~~y~i~~g~~l~ 149 (159)
T 3rt3_B 79 DEPLSILVR--NNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF---EGKP----LEDQLPLGEYGLKPLSTVF 149 (159)
T ss_dssp CCCEEEEEE--CTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTSBGGGGTCCTTCEEE
T ss_pred CCcEEEEEE--CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEE---CCee----cCCCCCHHHcCCCCCCEEE
Confidence 344677776 345567888999999999999999999999999999999 6765 3688999999999999999
Q ss_pred Eee
Q 026104 91 VID 93 (243)
Q Consensus 91 VvD 93 (243)
++=
T Consensus 150 l~~ 152 (159)
T 3rt3_B 150 MNL 152 (159)
T ss_dssp EEE
T ss_pred EEE
Confidence 974
No 94
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=3.5e-11 Score=89.84 Aligned_cols=77 Identities=10% Similarity=0.015 Sum_probs=61.8
Q ss_pred eEEEEEEeCCCCCceeEE-EcCCCCCHHHHHHHHHh-HhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 13 SVLLRVTHSNLKSFSADV-RFPLQMSVESVKDKLWR-KCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~-r~~~~~TV~~LK~KLe~-~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
.++|+|++..-.....++ .++++.||.+||++|+. ..|+||++|||+|- ..|+. .+|+++|++|++++|++||
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~-~~Gk~----L~D~~tL~~y~i~~~stl~ 84 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLD-PKGKS----LKDEDVLQKLPVGTTATLY 84 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESS-TTSCC----CCTTCBTTTSSCCSEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEec-CCCcC----cCCCCCHHHcCCCCCCEEE
Confidence 488999843222222357 88999999999999999 59999999999872 24665 3788999999999999999
Q ss_pred Eeec
Q 026104 91 VIDL 94 (243)
Q Consensus 91 VvD~ 94 (243)
+-|.
T Consensus 85 ~KDL 88 (88)
T 2dzj_A 85 FRDL 88 (88)
T ss_dssp ECCC
T ss_pred EEeC
Confidence 9884
No 95
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.18 E-value=3.2e-11 Score=95.02 Aligned_cols=71 Identities=11% Similarity=-0.019 Sum_probs=60.3
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCC-------C
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPL-------Q 85 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~-------d 85 (243)
.|.|+|.... ..+.+.+.++.||.+||+||+.++||||++|||++ +|+. ++|+++|++|+|+ .
T Consensus 2 ~mfl~ir~~k---tti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~---~Gk~----LeD~~TLsdy~I~~~~a~~q~ 71 (118)
T 2fnj_B 2 DVFLMIRRHK---TTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYK---DDQL----LDDGKTLGECGFTSQTARPQA 71 (118)
T ss_dssp EEEEEEEEBT---EEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE---TTEE----CCTTSBHHHHTCCTTTSBTTB
T ss_pred cEEEEEecCC---EEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEE---CCeE----CCCCCCHHHcCcccccccCCC
Confidence 3566665432 25678889999999999999999999999999997 7875 3899999999999 6
Q ss_pred CcEEEEee
Q 026104 86 GYRLHVID 93 (243)
Q Consensus 86 g~~IhVvD 93 (243)
+++||++=
T Consensus 72 ~stL~L~l 79 (118)
T 2fnj_B 72 PATVGLAF 79 (118)
T ss_dssp CEEEEEEE
T ss_pred CCEEEEEe
Confidence 99999984
No 96
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.17 E-value=5.6e-11 Score=100.76 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=63.6
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++|+|++ +.++...+.+++++||.+||++|+..+||||++|+|++ .|+. ++|+.+|++|+|++|++||++=
T Consensus 106 MqI~VKt--l~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~---~Gk~----L~D~~tL~dygI~~gstI~Lvl 176 (189)
T 3q3f_A 106 GQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLVL 176 (189)
T ss_dssp EEEEEEC--TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE---TTEE----CCTTCBGGGGTCCTTCEEEECC
T ss_pred eeeeeec--CCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEE---CCEE----CCCCCCHHHCCCCCCCEEEEEE
Confidence 8899984 45567888999999999999999999999999999998 6776 3678999999999999999985
No 97
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=8.3e-11 Score=92.37 Aligned_cols=84 Identities=12% Similarity=0.076 Sum_probs=69.6
Q ss_pred ccccccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCC
Q 026104 4 RLQQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP 83 (243)
Q Consensus 4 ~~~~~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i 83 (243)
+......++.+.|.|..... ....+..|+++.||.+||++|...+++|++.|+|+| +|+.+ .|+.+|.+||+
T Consensus 6 ~~~~~~~~~~itvkv~l~~~-~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy---~GKiL----KD~eTL~~~gI 77 (118)
T 2daf_A 6 SGQESVEDSLATVKVVLIPV-GQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRY---SGKIL----KNNETLVQHGV 77 (118)
T ss_dssp CCCCCCCSSCEEEEEEETTT-CCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEE---TTEEE----CSSCCHHHHSC
T ss_pred hhhhcccCccEEEEEEEcCC-CcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEE---CCeEc----CCcchHHHcCC
Confidence 34456677788888752222 235678899999999999999999999999999999 79863 78999999999
Q ss_pred CCCcEEEEeecC
Q 026104 84 LQGYRLHVIDLD 95 (243)
Q Consensus 84 ~dg~~IhVvD~~ 95 (243)
++|.+||++-.+
T Consensus 78 k~g~TIhLvi~s 89 (118)
T 2daf_A 78 KPQEIVQVEIFS 89 (118)
T ss_dssp CSSCEEEEEEEE
T ss_pred CCCCEEEEEEec
Confidence 999999999754
No 98
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.16 E-value=6e-11 Score=98.04 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=61.8
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
-+.|+|+. +.++...+++++++||.+||++|+..+|+||++|+|++ .|+. .+|+.+|++|++++|++||++
T Consensus 96 g~~i~Vk~--~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~---~g~~----L~D~~tL~~y~i~~g~tl~l~ 166 (172)
T 3u30_A 96 GMQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLV 166 (172)
T ss_dssp CEEEEEEE--SSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE---TTEE----CCTTSBSGGGTCCTTCEEEEC
T ss_pred cccceeec--ccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEE---CCcc----CCCCCcHHHhCCCCCCEEEEE
Confidence 35566653 45567888999999999999999999999999999998 6765 368999999999999999997
Q ss_pred e
Q 026104 93 D 93 (243)
Q Consensus 93 D 93 (243)
=
T Consensus 167 ~ 167 (172)
T 3u30_A 167 L 167 (172)
T ss_dssp C
T ss_pred E
Confidence 3
No 99
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.15 E-value=1.9e-10 Score=90.35 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=63.7
Q ss_pred CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHh------HhCC--CCCceEEEEEcCCCCeeeecCCCCCccCCC
Q 026104 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWR------KCGT--SVNSMSLELYDDTNTKVAALTDNSRPLGFY 81 (243)
Q Consensus 10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~------~tGi--pp~~qrL~l~~~~g~~~~~l~~d~~~L~~y 81 (243)
....|.|+|+ ++++...++.++++.||.+||++|+. .+|+ ||++|||+| .|+.+ +|+.+|++|
T Consensus 13 ~~~~m~I~vK--tl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy---~GK~L----eD~~TL~~y 83 (116)
T 1wgh_A 13 PADMINLRLI--LVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY---QGRFL----HGNVTLGAL 83 (116)
T ss_dssp CSSSEEEEEE--CSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEE---TTEEE----CSSCBTTTT
T ss_pred CCCeEEEEEE--eCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEE---CCcCC----CCCCcHHHc
Confidence 3446999998 45567889999999999999999999 7786 699999999 79873 788999999
Q ss_pred CCCCC--cEEEEee
Q 026104 82 SPLQG--YRLHVID 93 (243)
Q Consensus 82 ~i~dg--~~IhVvD 93 (243)
+|+.+ .+|||+=
T Consensus 84 ~I~~~~~~tlhLvl 97 (116)
T 1wgh_A 84 KLPFGKTTVMHLVA 97 (116)
T ss_dssp TCCSSCEEEEEEEE
T ss_pred CCCCCCceEEEEEc
Confidence 99866 6789885
No 100
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.13 E-value=1.4e-10 Score=92.32 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=64.8
Q ss_pred ccccCCceEEEEEEeCCCCCcee-EEEcCCCCCHHHHHHHH-----HhHhCCCC--CceEEEEEcCCCCeeeecCCCCCc
Q 026104 6 QQIEGDESVLLRVTHSNLKSFSA-DVRFPLQMSVESVKDKL-----WRKCGTSV--NSMSLELYDDTNTKVAALTDNSRP 77 (243)
Q Consensus 6 ~~~~~~~~v~v~It~s~~~~~~~-e~r~~~~~TV~~LK~KL-----e~~tGipp--~~qrL~l~~~~g~~~~~l~~d~~~ 77 (243)
+.-.....+.|+|++ +++... .++++++.||.+||++| +..+|||+ ++|||++ .|+. ++|+++
T Consensus 9 ~~~~~~~~~~i~~kt--~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy---~GK~----LeD~~T 79 (126)
T 1se9_A 9 LEAEVHNQLEIKFRL--TDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLIS---AGKV----LENSKT 79 (126)
T ss_dssp -CCSSCCCEEEEEEE--TTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEE---TTEE----CCTTSB
T ss_pred hhhhhcccEEEEEEE--CCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEE---CCeE----CcCCCc
Confidence 333445679999984 455455 68999999999999999 67899997 8999999 7986 389999
Q ss_pred cCCCCCCCC------cEEEEee
Q 026104 78 LGFYSPLQG------YRLHVID 93 (243)
Q Consensus 78 L~~y~i~dg------~~IhVvD 93 (243)
|++|+|+.| .+|||+=
T Consensus 80 Lsdy~I~~~~~~~~v~tmhlVl 101 (126)
T 1se9_A 80 VKDYRSPVSNLAGAVTTMHVII 101 (126)
T ss_dssp GGGGSCCTTSCTTCCEEEEEEE
T ss_pred HHHcCCCcCCccCCcEEEEEEe
Confidence 999999998 7899885
No 101
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=8.8e-11 Score=89.94 Aligned_cols=71 Identities=21% Similarity=0.195 Sum_probs=59.4
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
++.+.+++ ++....+.++++.||.+||++|+..|||||++|||.++ +.|+ | +|+++|++|++++|++||++
T Consensus 9 m~~~~vk~---~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~-~~gk----L-~D~~tLs~~~I~~gstL~lv 79 (100)
T 2dzm_A 9 MLDFRVEY---RDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGW-KTGD----V-EDSTVLKSLHLPKNNSLYVL 79 (100)
T ss_dssp EEEEEEEC---SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECC-SSSC----C-CTTSBHHHHCCCSEEEEEEC
T ss_pred eEEEEEEe---CCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEcc-CCCC----C-CCcCCHHHcCCCCCCEEEEE
Confidence 56677774 34567888999999999999999999999999999753 2344 2 68899999999999999995
No 102
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.13 E-value=5.2e-12 Score=100.29 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=0.0
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
|+|+|++ +.+...++++++++||.+||++|+..+|+||+.|+|++ .|+. .+|+.+|++|+|++|++|||+=
T Consensus 1 M~I~Vk~--~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~----L~D~~tL~~~~I~~gsti~l~~ 71 (128)
T 3u5e_m 1 MQIFVKT--LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLVL 71 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEe--CCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEE---CCEE----CCCCCchhhhccCCCCEEEEEE
Confidence 4677763 34456778899999999999999999999999999998 5776 3789999999999999999985
Q ss_pred c
Q 026104 94 L 94 (243)
Q Consensus 94 ~ 94 (243)
.
T Consensus 72 r 72 (128)
T 3u5e_m 72 R 72 (128)
T ss_dssp -
T ss_pred E
Confidence 3
No 103
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.10 E-value=2.5e-10 Score=91.33 Aligned_cols=71 Identities=21% Similarity=0.282 Sum_probs=61.5
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++|+|+. +.+...++.++++.||.+||++|+..+|+||+.|+|++ .|+. | +|+++|++|++++|++||++-
T Consensus 77 ~~i~Vk~--~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~---~g~~---L-~d~~tL~~~~i~~~~~i~l~~ 147 (152)
T 3b08_A 77 MQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVL 147 (152)
T ss_dssp EEEEEEE--SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEEE
T ss_pred cceeeee--cCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEE---CCEE---C-CCCCCHHHcCCCCCCEEEEEE
Confidence 5667763 34457788999999999999999999999999999998 5775 3 688999999999999999974
No 104
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.10 E-value=2e-10 Score=91.33 Aligned_cols=78 Identities=13% Similarity=0.137 Sum_probs=65.1
Q ss_pred ccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHh------HhCCC--CCceEEEEEcCCCCeeeecCCCCCccC
Q 026104 8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWR------KCGTS--VNSMSLELYDDTNTKVAALTDNSRPLG 79 (243)
Q Consensus 8 ~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~------~tGip--p~~qrL~l~~~~g~~~~~l~~d~~~L~ 79 (243)
+...+.|.|+|+ ++++...++.++++.||.+||++|+. .+|+| |++|||+| .|+.+ +|+++|+
T Consensus 12 ~~~~~~m~I~vk--tl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy---~GK~L----eD~~TL~ 82 (125)
T 2gow_A 12 NVPADMINLRLI--LVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY---QGRFL----HGNVTLG 82 (125)
T ss_dssp SCCTTCEEEEEE--CTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEES---SSSEE----ESSCBTG
T ss_pred CCCCCeEEEEEE--eCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEE---CCcCC----CCCCcHH
Confidence 344556999998 45567889999999999999999999 88995 89999999 79873 6889999
Q ss_pred CCCCCCCc--EEEEeec
Q 026104 80 FYSPLQGY--RLHVIDL 94 (243)
Q Consensus 80 ~y~i~dg~--~IhVvD~ 94 (243)
+|+|+.|. +|||+=.
T Consensus 83 ~y~I~~~~~~tlhlv~r 99 (125)
T 2gow_A 83 ALKLPFGKTTVMHLVAR 99 (125)
T ss_dssp GGCCCTTSEEEEEEEEC
T ss_pred HcCCCCCCceEEEEEec
Confidence 99999765 7888753
No 105
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.09 E-value=2.6e-10 Score=103.19 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=65.8
Q ss_pred cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (243)
Q Consensus 9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~ 88 (243)
..+..++|+|++ +.++..++++++++||.+||++|+..+||||++|||++ .|+. | +|+++|++|+|++|++
T Consensus 229 ~~~~~MqI~VKt--l~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~---~Gk~---L-~D~~TLsdygI~~gst 299 (307)
T 3ai5_A 229 GITGSMQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKEST 299 (307)
T ss_dssp SSCCCEEEEEEC--TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEE---C-CTTSBTGGGTCCTTCE
T ss_pred CCCCeEEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEe---CCee---c-CCCCCHHHcCCCCCCE
Confidence 455678999984 44567789999999999999999999999999999999 5775 3 6889999999999999
Q ss_pred EEEe
Q 026104 89 LHVI 92 (243)
Q Consensus 89 IhVv 92 (243)
|||+
T Consensus 300 L~Lv 303 (307)
T 3ai5_A 300 LHLV 303 (307)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
No 106
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.06 E-value=1.6e-11 Score=100.71 Aligned_cols=71 Identities=18% Similarity=0.257 Sum_probs=0.0
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
|+|+|++ +.+....+++++++||.+||++|+..+||||++|+|++ .|+. ++|+.+|++|+|++|++|||+=
T Consensus 1 MqI~VK~--l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~----L~D~~tL~dygI~~gstL~Lvl 71 (152)
T 3u5c_f 1 MQIFVKT--LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLVL 71 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEe--CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCEE----ccccCcHHHcCCCCCCEEEEEe
Confidence 4677764 34446678899999999999999999999999999999 5776 3688999999999999999984
No 107
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.04 E-value=4.6e-10 Score=82.89 Aligned_cols=78 Identities=13% Similarity=0.071 Sum_probs=60.3
Q ss_pred EEEEEEeCCCCCceeEEE-cCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 14 VLLRVTHSNLKSFSADVR-FPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r-~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
++|.|++.+- ... +. |+++.||.+||++|+..+||||+.|+|.+- ..++.+ .+.+++++|.+||+.+|.+|||.
T Consensus 1 m~i~vr~~~G--~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~-~p~k~l-~l~~~~~tL~~~gl~~g~~l~v~ 75 (86)
T 2kzr_A 1 WRVRCKAKGG--THL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVG-YPPECL-DLSDRDITLGDLPIQSGDMLIVE 75 (86)
T ss_dssp CCEEEEETTE--EEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEES-SCCCCC-CCCCSSCBTTTSSCCTTCEEECC
T ss_pred CEEEEEcCCC--CEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeC-CCCccc-ccCCCCCCHHHcCCCCCCEEEEE
Confidence 3567775443 232 55 899999999999999999999999999872 223442 12347899999999999999999
Q ss_pred ecCC
Q 026104 93 DLDP 96 (243)
Q Consensus 93 D~~p 96 (243)
+..+
T Consensus 76 ~~~~ 79 (86)
T 2kzr_A 76 EDQT 79 (86)
T ss_dssp CCSC
T ss_pred eCCC
Confidence 9754
No 108
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.99 E-value=1e-09 Score=99.88 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=63.5
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEE---EEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLE---LYDDTNTKVAALTDNSRPLGFYSPLQGY 87 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~---l~~~~g~~~~~l~~d~~~L~~y~i~dg~ 87 (243)
...|+|.|+++ +...++.++++.||++||++|+..|||||++|||+ + .|+. .+|+.+|++|+|++|+
T Consensus 3 ~~~i~i~Vk~~---g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~---~Gk~----l~D~~~L~~~~ik~g~ 72 (320)
T 3shq_A 3 VKEVVVIVKWS---GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKY---KGKT----AADNVKISALELKPNF 72 (320)
T ss_dssp -CEEEEEEEET---TEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBS---SSSB----CCTTSBTTSSCCC--C
T ss_pred CceEEEEEEEC---CEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeeccc---CCcc----cCccccHHHcCCCCCC
Confidence 45699999974 34678899999999999999999999999999999 5 5665 4789999999999999
Q ss_pred EEEEeecCC
Q 026104 88 RLHVIDLDP 96 (243)
Q Consensus 88 ~IhVvD~~p 96 (243)
+||++=+..
T Consensus 73 ~l~L~gs~~ 81 (320)
T 3shq_A 73 KLMMVGSTE 81 (320)
T ss_dssp EEEEECCCC
T ss_pred EEEEEccch
Confidence 999997654
No 109
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.82 E-value=3.9e-09 Score=97.72 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=62.6
Q ss_pred CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHh---HhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCC
Q 026104 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWR---KCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG 86 (243)
Q Consensus 10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~---~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg 86 (243)
.+..|+|+|++ +.++...+.++++.||.+||++|+. .+|||+++|||+| .|+.+ +|+++|.+|+|++|
T Consensus 4 ~~~~M~I~VKt--l~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy---~GK~L----~D~~tL~dygI~~g 74 (368)
T 1oqy_A 4 GSSAVTITLKT--LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY---AGKIL----SDDVPIRDYRIDEK 74 (368)
T ss_dssp --CCCCEEEEE--TTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEES---SSSEE----CSSSBTTTTCCCTT
T ss_pred CCceEEEEEEe--CCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEE---CCeec----CCcCCHHHcCCCCC
Confidence 34568899984 3456778899999999999999999 7889999999998 68863 67899999999999
Q ss_pred cEE-EEee
Q 026104 87 YRL-HVID 93 (243)
Q Consensus 87 ~~I-hVvD 93 (243)
++| |++-
T Consensus 75 stIv~lv~ 82 (368)
T 1oqy_A 75 NFVVVMVT 82 (368)
T ss_dssp SCEEEEEE
T ss_pred CEEEEEEe
Confidence 998 5553
No 110
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.80 E-value=2.5e-08 Score=75.24 Aligned_cols=76 Identities=7% Similarity=0.132 Sum_probs=65.5
Q ss_pred CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (243)
Q Consensus 10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I 89 (243)
....|+|.|+. ..+....+++.++.++..|++++....|+|+++|||+| +|+.+ .++.|+.+|++++|.+|
T Consensus 4 ~~~~i~ikVk~--~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~F---dG~~l----~~~~Tp~dl~medgD~I 74 (94)
T 2io1_B 4 MNDHINLKVAG--QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPI----NETDTPAQLEMEDEDTI 74 (94)
T ss_dssp --CEEEEEEEC--TTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEEC----CTTCCTTTTTCCTTCEE
T ss_pred CCCeEEEEEEC--CCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEE---CCEEc----CCCCCHHHcCCCCCCEE
Confidence 34568999984 34557889999999999999999999999999999999 78873 67799999999999999
Q ss_pred EEeec
Q 026104 90 HVIDL 94 (243)
Q Consensus 90 hVvD~ 94 (243)
||+-.
T Consensus 75 dv~~~ 79 (94)
T 2io1_B 75 DVFQQ 79 (94)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99863
No 111
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.70 E-value=1.2e-07 Score=67.79 Aligned_cols=70 Identities=7% Similarity=0.141 Sum_probs=62.2
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
|+|.|++ ..+....+++.++.+++.|+++.....|++++++||.| +|+.+ .++.|..+|++++|.+|||.
T Consensus 2 i~lkV~~--~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f---dG~~l----~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAG--QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPI----NETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEEC--TTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE---TTEEC----CTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEEC--CCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE---CCEEc----CCCCCHHHcCCCCCCEEEEE
Confidence 7888874 34457889999999999999999999999999999999 78873 67789999999999999985
No 112
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.67 E-value=1.3e-07 Score=70.97 Aligned_cols=76 Identities=7% Similarity=0.149 Sum_probs=65.4
Q ss_pred CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (243)
Q Consensus 10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I 89 (243)
+...|+|.|++ ..+....+++.++.++..|+++.....|++++++||.| +|+.+ .++.|..+|++++|.+|
T Consensus 2 ~~~~i~ikVk~--~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F---dG~~l----~~~~Tp~dl~medgD~I 72 (91)
T 2io0_B 2 ANDHINLKVAG--QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPI----NETDTPAQLEMEDEDTI 72 (91)
T ss_dssp --CEEEEEEEC--TTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE---TTEEC----CTTCCTTTTTCCTTEEE
T ss_pred CCCeEEEEEEC--CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE---CCEEc----CCCCCHHHcCCCCCCEE
Confidence 34568999984 34557889999999999999999999999999999999 78873 67799999999999999
Q ss_pred EEeec
Q 026104 90 HVIDL 94 (243)
Q Consensus 90 hVvD~ 94 (243)
+|+-.
T Consensus 73 dv~~~ 77 (91)
T 2io0_B 73 DVFQQ 77 (91)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99853
No 113
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.65 E-value=1.2e-07 Score=68.98 Aligned_cols=75 Identities=15% Similarity=0.136 Sum_probs=65.0
Q ss_pred cCCceEEEEEEeCCCCCc-eeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104 9 EGDESVLLRVTHSNLKSF-SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY 87 (243)
Q Consensus 9 ~~~~~v~v~It~s~~~~~-~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~ 87 (243)
.++..|+|.|++ ..++ ...+++.++.++..|+++.....|++++++||.| +|+.+ .++.|..+|++++|.
T Consensus 3 ~~~~~i~ikV~~--~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f---dG~~l----~~~~Tp~~l~medgD 73 (79)
T 3a4r_A 3 LGSQELRLRVQG--KEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF---DGTKL----SGKELPADLGLESGD 73 (79)
T ss_dssp TCCCCEEEEEEC--SSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE---TTEEC----CSCCCHHHHTCCTTC
T ss_pred CCCCEEEEEEEe--CCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE---CCEEc----CCCCCHHHcCCCCCC
Confidence 455679999984 3443 6789999999999999999999999999999999 78873 678899999999999
Q ss_pred EEEEe
Q 026104 88 RLHVI 92 (243)
Q Consensus 88 ~IhVv 92 (243)
+|||.
T Consensus 74 ~Idv~ 78 (79)
T 3a4r_A 74 LIEVW 78 (79)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99985
No 114
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.64 E-value=3.1e-09 Score=89.95 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++|+|++ +++....+.+++++||.+||++|+..+||||++|+|+| .|+. | +|+.+|+ ++++||++=
T Consensus 1 MqI~VKt--L~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf---~GK~---L-eD~~TLs-----~~STLhLvl 66 (189)
T 2xzm_9 1 MQVQVKT--LEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVN---NGFI---A-PNTELVT-----DDVTYYLSL 66 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEc--CCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEe---cCeE---C-CCCCccc-----CCCEEEEEE
Confidence 4677873 44556778899999999999999999999999999999 6876 3 6788888 899999973
No 115
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.57 E-value=4.3e-07 Score=68.16 Aligned_cols=74 Identities=7% Similarity=0.166 Sum_probs=64.8
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
...|+|.|++. .+....+++.++.++..|+++.....|++++++||.| +|+.+ .++.|+.+|++++|.+||
T Consensus 15 ~~~i~ikV~~~--~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f---dG~~l----~~~~Tp~dl~medgD~Id 85 (93)
T 2d07_B 15 NDHINLKVAGQ--DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPI----NETDTPAQLEMEDEDTID 85 (93)
T ss_dssp CCEEEEEEECT--TSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEE---TTEEC----CTTCCTTTTTCCTTEEEE
T ss_pred CCeEEEEEECC--CCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEE---CCEEc----CCCCCHHHcCCCCCCEEE
Confidence 45789999843 4457889999999999999999999999999999999 78873 677899999999999999
Q ss_pred Eee
Q 026104 91 VID 93 (243)
Q Consensus 91 VvD 93 (243)
|+=
T Consensus 86 v~~ 88 (93)
T 2d07_B 86 VFQ 88 (93)
T ss_dssp EEE
T ss_pred EEe
Confidence 974
No 116
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.50 E-value=6e-07 Score=68.93 Aligned_cols=74 Identities=7% Similarity=0.166 Sum_probs=65.1
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
...|+|.|++. ....+.+++.++.++..|+++.....|++++++||+| +|+.+ .++.|..+|++++|.+||
T Consensus 22 ~~~I~IkVk~~--~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~F---dG~~l----~~~~Tp~dl~medgD~Id 92 (104)
T 1wz0_A 22 NDHINLKVAGQ--DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPI----NETDTPAQLEMEDEDTID 92 (104)
T ss_dssp SCCEEEEEECS--SSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEES---SSSBC----CTTSCTTTTTCCTTEEEE
T ss_pred CCeEEEEEECC--CCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEE---CCEEc----CCCCCHHHcCCCCCCEEE
Confidence 34699999843 4457889999999999999999999999999999999 78873 677899999999999999
Q ss_pred Eee
Q 026104 91 VID 93 (243)
Q Consensus 91 VvD 93 (243)
|+-
T Consensus 93 v~~ 95 (104)
T 1wz0_A 93 VFQ 95 (104)
T ss_dssp ECC
T ss_pred EEE
Confidence 984
No 117
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.39 E-value=1.9e-06 Score=66.45 Aligned_cols=73 Identities=7% Similarity=0.104 Sum_probs=64.6
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
...|+|.|.. .+....+++.++.++..|+++.....|++++++||.| +|+.+ .++.|..+|++++|.+|+
T Consensus 29 ~~~I~IkV~~---~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F---dG~rl----~~~~Tp~dl~medgD~Id 98 (106)
T 2eke_C 29 ETHINLKVSD---GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQTPEDLDMEDNDIIE 98 (106)
T ss_dssp CSEEEEEEEC---SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEEC----CTTCCTTTTTCCTTEEEE
T ss_pred CCeEEEEEec---CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE---CCeEc----CCCCCHHHcCCCCCCEEE
Confidence 3569999984 4567889999999999999999999999999999999 78873 677899999999999999
Q ss_pred Eee
Q 026104 91 VID 93 (243)
Q Consensus 91 VvD 93 (243)
|+-
T Consensus 99 v~~ 101 (106)
T 2eke_C 99 AHR 101 (106)
T ss_dssp EEE
T ss_pred EEe
Confidence 974
No 118
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.33 E-value=6.8e-07 Score=69.36 Aligned_cols=74 Identities=15% Similarity=0.154 Sum_probs=64.8
Q ss_pred ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (243)
Q Consensus 12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV 91 (243)
..|+|.|+.. .+....+++.++.++..|+++.....|+++++|||+| +|+.+ .++.|..+|++++|.+|+|
T Consensus 25 ~~I~IkVk~~--~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF---dG~~L----~~~~Tp~dl~mEDgD~Idv 95 (110)
T 2k8h_A 25 ALVAVKVVNA--DGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF---DGTPI----DETKTPEELGMEDDDVIDA 95 (110)
T ss_dssp CCEEEEEEET--TSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES---SSCBC----CSSSHHHHHHCSSEEEEEE
T ss_pred CeEEEEEECC--CCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE---CCEEc----CCCCCHHHcCCCCCCEEEE
Confidence 4699999854 3456789999999999999999999999999999999 78873 6779999999999999999
Q ss_pred eec
Q 026104 92 IDL 94 (243)
Q Consensus 92 vD~ 94 (243)
+-.
T Consensus 96 ~~~ 98 (110)
T 2k8h_A 96 MVE 98 (110)
T ss_dssp ECC
T ss_pred EEc
Confidence 853
No 119
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=97.86 E-value=0.0001 Score=57.48 Aligned_cols=73 Identities=12% Similarity=0.210 Sum_probs=63.5
Q ss_pred ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (243)
Q Consensus 12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV 91 (243)
..|+|.|... .+..+.+++.++.++..|+.......|+++.++|+.| +|+.+ +++.|..++++++|.+|+|
T Consensus 39 ~~I~LKV~~q--dg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlF---DG~rI----~~~~TP~dL~MEDgD~IdV 109 (115)
T 3kyd_D 39 EYIKLKVIGQ--DSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF---EGQRI----ADNHTPKELGMEEEDVIEV 109 (115)
T ss_dssp CEEEEEEECT--TSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEE---TTEEC----CTTCCTTTTTCCTTCEEEE
T ss_pred CeEEEEEEcC--CCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEE---CCeEC----CCCCCHHHcCCCCCCEEEE
Confidence 4789999743 3446788999999999999999999999999999999 78874 6789999999999999998
Q ss_pred ee
Q 026104 92 ID 93 (243)
Q Consensus 92 vD 93 (243)
.-
T Consensus 110 ~~ 111 (115)
T 3kyd_D 110 YQ 111 (115)
T ss_dssp EE
T ss_pred Ee
Confidence 73
No 120
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.79 E-value=5.3e-05 Score=57.08 Aligned_cols=62 Identities=6% Similarity=0.112 Sum_probs=47.1
Q ss_pred EEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCC
Q 026104 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYS 82 (243)
Q Consensus 15 ~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~ 82 (243)
-|+|=+ ..++..+.+-+.+..||..||++|+..|||||++|+|.+ .|+.+. | +.+.+...|+
T Consensus 14 vvHVf~-~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~---eg~~l~-l-~p~~~a~~~p 75 (94)
T 4efo_A 14 VIHVFS-LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIY---EGRRLV-L-EPGRLAQHFP 75 (94)
T ss_dssp EEEEEE-TTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEEEC-C-CTTCBGGGSC
T ss_pred eEEEEE-cccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHh---CCCccc-c-CCCCccccCC
Confidence 344432 234457788889999999999999999999999999999 787654 3 5555555554
No 121
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00022 Score=60.69 Aligned_cols=74 Identities=7% Similarity=0.090 Sum_probs=65.1
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
...|+|.|. . .+.....++.++.++..|+.......|+++.++|+.| +|+.+ .++.|..++++++|.+|+
T Consensus 27 ~~~I~LkV~-~--~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~F---dG~rI----~~~~TP~dL~MEdgD~Id 96 (200)
T 3pge_A 27 ETHINLKVS-D--GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQTPEDLDMEDNDIIE 96 (200)
T ss_dssp CCCEEEEEE-C--SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEE---TTEEC----CTTCCTTTTTCCTTEEEE
T ss_pred CCeEEEEEe-c--CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEE---CCEEc----CCCCCHHHcCCCCCCEEE
Confidence 345899996 2 5567899999999999999999999999999999999 78874 678999999999999999
Q ss_pred Eeec
Q 026104 91 VIDL 94 (243)
Q Consensus 91 VvD~ 94 (243)
|+=.
T Consensus 97 v~~~ 100 (200)
T 3pge_A 97 AHRE 100 (200)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9753
No 122
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00042 Score=58.67 Aligned_cols=74 Identities=7% Similarity=0.091 Sum_probs=64.7
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
...|+|.|. . .+..+.+++.++.++..|++......|+++.++|+.| +|+.+ +++.|..+++++||.+|+
T Consensus 55 ~e~InLKVk-~--dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF---DGqRI----~~ddTPeDLdMEDGDtID 124 (207)
T 3tix_A 55 ETHINLKVS-D--GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY---DGIEI----QADQTPEDLDMEDNDIIE 124 (207)
T ss_dssp CCEEEEEEE-C--SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE---TTEEC----CSSCCTTTTTCCTTEEEE
T ss_pred CCcEEEEEe-c--CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE---CCeec----CCCCCHHHcCCCCCCEEE
Confidence 346888886 2 4567889999999999999999999999999999999 78874 678999999999999999
Q ss_pred Eeec
Q 026104 91 VIDL 94 (243)
Q Consensus 91 VvD~ 94 (243)
|.=.
T Consensus 125 V~le 128 (207)
T 3tix_A 125 AHRE 128 (207)
T ss_dssp ECCC
T ss_pred EEEe
Confidence 9853
No 123
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.45 E-value=4.9e-05 Score=55.35 Aligned_cols=74 Identities=14% Similarity=0.224 Sum_probs=53.8
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
+.|.|.+.+- ..-+.++++.|+.+|+++|...+++++..|.|.+-.+....+ ....+.+|+++|++.|..|+|.
T Consensus 5 m~lRvrs~~G---~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l--~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG---VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEI--TASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE---EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGS--SSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC---CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcc--cCCCCCCHHHcCCCCCCEEEEe
Confidence 5566765543 223447899999999999999999999999887732210111 1237889999999999999875
No 124
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=96.75 E-value=0.0024 Score=46.69 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=55.7
Q ss_pred ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCc---eEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNS---MSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (243)
Q Consensus 12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~---qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~ 88 (243)
+.|+|+|--+.-......+|+|..+|+.+|++-+-+..+++... =.|.+. .+.. +..+...|.+|++.+|..
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~---NK~~--~L~~~~~L~d~~ItnGD~ 77 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVV---NKDK--VFSGECKLSDCGITNGDR 77 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEG---GGTE--EEETTSBTGGGTCCTTCE
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEe---cCCE--EEcCCCEEeeCCcCCCCE
Confidence 35777775334566789999999999999999999999998631 122231 1211 347889999999999999
Q ss_pred EEE
Q 026104 89 LHV 91 (243)
Q Consensus 89 IhV 91 (243)
|.|
T Consensus 78 Lei 80 (81)
T 2bps_A 78 LEI 80 (81)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 125
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=96.74 E-value=0.0068 Score=52.18 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=56.7
Q ss_pred eeEEEcCCCCCHHHHHHHHHhHhCCCCC-ceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEeecC
Q 026104 27 SADVRFPLQMSVESVKDKLWRKCGTSVN-SMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 95 (243)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGipp~-~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD~~ 95 (243)
...++|+...||.+|+.++-..++|+++ ..||..+...++. ..|.+.+.+|.++++.++..|.|.--+
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~-~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTY-EQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSC-EECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCH-hhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 4568899999999999999999999997 6999997654443 336677899999999999998776554
No 126
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=96.48 E-value=0.026 Score=40.97 Aligned_cols=71 Identities=13% Similarity=0.186 Sum_probs=60.0
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCC-ceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVN-SMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~-~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV 91 (243)
.|.+.+.+|... -...+++++.||.+|=+---..-|||++ .-+|.| +|.- .+.+.++.+|.+.||..|-|
T Consensus 9 ~~~~~~~~~~~~--dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllF---DGdR----Ldp~~tp~DlemeD~D~IDv 79 (82)
T 3goe_A 9 LITLLLRSSKSE--DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEF---EGEW----LDPNDQVQSTELEDEDQVSV 79 (82)
T ss_dssp EEEEEEEESSSC--CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEE---TTEE----CCTTSBGGGSSCCTTCEEEE
T ss_pred HHHHhhhccCCC--CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEE---cCcc----cCccCChhhhCCcCCceeee
Confidence 577888765443 4677889999999999999999999999 999999 7876 37889999999999998877
Q ss_pred e
Q 026104 92 I 92 (243)
Q Consensus 92 v 92 (243)
+
T Consensus 80 m 80 (82)
T 3goe_A 80 V 80 (82)
T ss_dssp E
T ss_pred e
Confidence 4
No 127
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=96.44 E-value=0.00048 Score=59.09 Aligned_cols=72 Identities=7% Similarity=0.093 Sum_probs=0.0
Q ss_pred ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (243)
Q Consensus 12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV 91 (243)
..|+|.|+ . .+.....++.++.++..|++....+.|+++.++|+.| +|+.+ .++.|..+++++||.+|+|
T Consensus 20 e~InLKV~-q--dGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLF---DGqRI----~dddTPadL~MEDGDtIDV 89 (227)
T 3v7o_A 20 THINLKVS-D--GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQTPEDLDMEDNDIIEA 89 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeEEEEEe-C--CCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEE---CCEec----CCCCCHHHcCCCCCCEEEE
Confidence 35777773 2 4457788999999999999999999999999999999 78874 5788999999999999999
Q ss_pred ee
Q 026104 92 ID 93 (243)
Q Consensus 92 vD 93 (243)
+=
T Consensus 90 ~l 91 (227)
T 3v7o_A 90 HR 91 (227)
T ss_dssp --
T ss_pred Ee
Confidence 84
No 128
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=96.33 E-value=0.019 Score=48.56 Aligned_cols=76 Identities=7% Similarity=0.086 Sum_probs=64.3
Q ss_pred cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (243)
Q Consensus 9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~ 88 (243)
..+..|+|.|.. ....+..++..+.++..|++......|++++++|+.| +|+.+ .++.+-....++++..
T Consensus 17 ~~~~~i~ikv~~---~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~f---dG~~i----~~~~Tpk~L~~ed~d~ 86 (209)
T 3uf8_A 17 KPETHINLKVSD---GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQTPEDLDMEDNDI 86 (209)
T ss_dssp -CCSEEEEEEEC---SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEE---TTEEC----CTTCCTTTTTCCTTEE
T ss_pred CCCCcEEEEEEc---CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEE---CCEec----cCCCChHHhhhccccc
Confidence 345679999973 3446789999999999999999999999999999999 78774 6788889999999999
Q ss_pred EEEeec
Q 026104 89 LHVIDL 94 (243)
Q Consensus 89 IhVvD~ 94 (243)
|.|.=.
T Consensus 87 I~~~~e 92 (209)
T 3uf8_A 87 IEAHRE 92 (209)
T ss_dssp EEEECS
T ss_pred chhhcc
Confidence 988754
No 129
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=96.31 E-value=0.012 Score=50.08 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=56.5
Q ss_pred eeEEEcCCCCCHHHHHHHHHhHhCCCCC-ceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEeecC
Q 026104 27 SADVRFPLQMSVESVKDKLWRKCGTSVN-SMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 95 (243)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGipp~-~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD~~ 95 (243)
...+.|+...||.+|+.++-..++|+++ .+||..+...++ ...|++.+.+|.++++.++..|.|.=-+
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~-~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNT-FEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTE-EEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCC-eeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 4668899999999999999999999997 799998754443 3446677899999999999998876544
No 130
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=95.92 E-value=0.084 Score=37.96 Aligned_cols=80 Identities=15% Similarity=0.025 Sum_probs=59.7
Q ss_pred cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (243)
Q Consensus 9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~ 88 (243)
.++...+|.|...+ +....+||..+.||.+|..-+.. .|.++...+|.--. ..+.+. ..+.+++|.+.|+.+...
T Consensus 3 ~~~~~~~i~iRlpd--G~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~f-Prk~l~-~~d~~~TL~e~gL~p~a~ 77 (84)
T 3qx1_A 3 HMEPVSKLRIRTPS--GEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTF-PRRDVT-QLDPNKSLLEVKLFPQET 77 (84)
T ss_dssp -CCCEEEEEEECTT--SCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSS-SCCBGG-GSCTTSBTTTTTCCSEEE
T ss_pred CCCCeEEEEEECCC--CCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCC-CCCCCc-CCCCCCCHHHCCCCCCCE
Confidence 46678889998544 45789999999999999999988 67777777765211 233321 236688999999999999
Q ss_pred EEEee
Q 026104 89 LHVID 93 (243)
Q Consensus 89 IhVvD 93 (243)
|+|..
T Consensus 78 L~ve~ 82 (84)
T 3qx1_A 78 LFLEA 82 (84)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 98864
No 131
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.78 E-value=0.051 Score=43.36 Aligned_cols=84 Identities=11% Similarity=0.133 Sum_probs=54.9
Q ss_pred CceEEEEEEeCCCC----CceeEEEcCCCCCHHHHHHHHHhHh--CCC------CCceEEEEEcCCCCeeeecCCCC---
Q 026104 11 DESVLLRVTHSNLK----SFSADVRFPLQMSVESVKDKLWRKC--GTS------VNSMSLELYDDTNTKVAALTDNS--- 75 (243)
Q Consensus 11 ~~~v~v~It~s~~~----~~~~e~r~~~~~TV~~LK~KLe~~t--Gip------p~~qrL~l~~~~g~~~~~l~~d~--- 75 (243)
...+.|+|...... .-.+..++=.-+||.|+|+||-... |+| +.++.|+.+.+.+..+.--+.|.
T Consensus 22 y~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~ 101 (138)
T 2r2o_A 22 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 101 (138)
T ss_dssp CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred eEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCccc
Confidence 34567776533211 2356778888899999999987664 443 45788888766433321112222
Q ss_pred --------CccCCCCCCCCcEEEEeec
Q 026104 76 --------RPLGFYSPLQGYRLHVIDL 94 (243)
Q Consensus 76 --------~~L~~y~i~dg~~IhVvD~ 94 (243)
.||..|+|.||++|-++-.
T Consensus 102 ~~~~wkrLNTL~HY~V~Dga~l~l~~~ 128 (138)
T 2r2o_A 102 VQGLWRRLNTLQHYKVPDGATVALVPC 128 (138)
T ss_dssp EETTEEECCBHHHHTCCTTCEEEEEEC
T ss_pred ccCCceeecchhccCCCCCCEEEEEEC
Confidence 2899999999999988754
No 132
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=95.75 E-value=0.021 Score=42.40 Aligned_cols=78 Identities=12% Similarity=0.145 Sum_probs=54.0
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCc-eEEEEEcCCCCeeeecCCCC---C--ccCCCCCC
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNS-MSLELYDDTNTKVAALTDNS---R--PLGFYSPL 84 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~-qrL~l~~~~g~~~~~l~~d~---~--~L~~y~i~ 84 (243)
.+.|+|.+..+. ...-.+++++++..+|++||..++++++.+ ..|.+.|.+|..+. +..|. . .|-..+=.
T Consensus 4 ~~~vkvK~~~~g---di~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~it-isSd~EL~eAl~l~~~n~~ 79 (89)
T 1vd2_A 4 GSQVRVKAYYRG---DIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCT-VSSQLELEEAFRLYELNKD 79 (89)
T ss_dssp SSCEEEEEESSS---CEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEE-CCSHHHHHHHHHHHHHTSC
T ss_pred CCeEEEEEEeCC---eEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCccc-ccCHHHHHHHHHHHHccCC
Confidence 445778776443 367789999999999999999999998655 78889898887754 22221 1 22223344
Q ss_pred CCcEEEEe
Q 026104 85 QGYRLHVI 92 (243)
Q Consensus 85 dg~~IhVv 92 (243)
..-+|||-
T Consensus 80 ~~l~ihvf 87 (89)
T 1vd2_A 80 SELLIHVF 87 (89)
T ss_dssp CCEEEEEE
T ss_pred CCEEEEEc
Confidence 45567774
No 133
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=95.64 E-value=0.063 Score=40.27 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=61.6
Q ss_pred CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (243)
Q Consensus 10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I 89 (243)
....|+|.|...+.. ....+++.++.++..|...-....|+++...|+.| +|..+ ..+.|..+++++||..|
T Consensus 22 ~~~~I~LkV~~~dg~-~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F---DG~rI----~~~~TP~dLdMEDgD~I 93 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKH-QTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF---DGTKL----SGRELPADLGMESGDLI 93 (97)
T ss_dssp SCSEEEEEEEESSSS-CEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE---TTEEC----CSCSCHHHHTCCTTEEE
T ss_pred CCCeEEEEEEcCCCC-EEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE---CCEEc----CCCCCHHHcCCCCCCEE
Confidence 445789999754331 25678889999999999999999999999999999 78764 56788999999999998
Q ss_pred EEe
Q 026104 90 HVI 92 (243)
Q Consensus 90 hVv 92 (243)
-|.
T Consensus 94 Dv~ 96 (97)
T 2jxx_A 94 EVW 96 (97)
T ss_dssp EEE
T ss_pred EEe
Confidence 763
No 134
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=95.53 E-value=0.039 Score=40.39 Aligned_cols=41 Identities=10% Similarity=0.162 Sum_probs=37.3
Q ss_pred ceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCC
Q 026104 26 FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNT 66 (243)
Q Consensus 26 ~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~ 66 (243)
+.+-+|++++++..+|.+||....+++++.++|++++.++.
T Consensus 14 ~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~ 54 (83)
T 1oey_A 14 YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSN 54 (83)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCC
Confidence 47889999999999999999999999999999999986433
No 135
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=95.11 E-value=0.0036 Score=57.51 Aligned_cols=75 Identities=7% Similarity=0.082 Sum_probs=0.0
Q ss_pred CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (243)
Q Consensus 10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I 89 (243)
+...|+|.|+. .+.....++.++.++..|++....+.|++++++|+.| +|+.+ .++.|..+++++||.+|
T Consensus 18 ~~~~I~LKV~~---~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlF---dG~rI----~~~~TP~~L~MEDgD~I 87 (360)
T 3ix6_A 18 PETHINLKVSD---GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQTPEDLDMEDNDII 87 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEec---CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEE---CCeEC----CCCCChHHcCCCccchh
Confidence 34468888874 2346778899999999999999999999999999999 68774 57799999999999999
Q ss_pred EEeec
Q 026104 90 HVIDL 94 (243)
Q Consensus 90 hVvD~ 94 (243)
+|.-.
T Consensus 88 dv~~~ 92 (360)
T 3ix6_A 88 EAHRE 92 (360)
T ss_dssp -----
T ss_pred hhhhc
Confidence 99764
No 136
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=95.05 E-value=0.15 Score=40.14 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=46.7
Q ss_pred eeEEEcCCCCCHHHHHHHHHhHh--CCC------CCceEEEEEcCCCCeeeecCC-C-----------CCccCCCCCCCC
Q 026104 27 SADVRFPLQMSVESVKDKLWRKC--GTS------VNSMSLELYDDTNTKVAALTD-N-----------SRPLGFYSPLQG 86 (243)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~t--Gip------p~~qrL~l~~~~g~~~~~l~~-d-----------~~~L~~y~i~dg 86 (243)
....++=.-.||.|+|+||-..+ |+| +.+|.|+++.+....+. |.+ | -.||..|++.||
T Consensus 18 ~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~i-L~D~D~ts~~~~~~krLNTL~HY~V~dg 96 (127)
T 3h6n_A 18 SLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYI-LRDLDDTSVVEDGRKKLNTLAHYKIPEG 96 (127)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEE-CCSSSTTSCEETTEECCCBTTTTTCCTT
T ss_pred ceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceE-eecCCCcceecCceeEeccccccCCCCC
Confidence 46677778899999999986542 444 47899999865433321 211 1 248999999999
Q ss_pred cEEEEee
Q 026104 87 YRLHVID 93 (243)
Q Consensus 87 ~~IhVvD 93 (243)
++|-++=
T Consensus 97 atv~l~~ 103 (127)
T 3h6n_A 97 ASLAMSL 103 (127)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9998873
No 137
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.98 E-value=0.097 Score=40.31 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=49.8
Q ss_pred ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHh--CCC------CCceEEEEEcCCCCeeeecCC-C--------
Q 026104 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKC--GTS------VNSMSLELYDDTNTKVAALTD-N-------- 74 (243)
Q Consensus 12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~t--Gip------p~~qrL~l~~~~g~~~~~l~~-d-------- 74 (243)
..+.|++............++-.-.||.|+|+||-... |+| +.++.|+.+.+.+..+ |.+ |
T Consensus 10 ~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~i--L~D~D~ts~~~~~ 87 (111)
T 4e71_A 10 APLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQI--LSDLDLTSQREGR 87 (111)
T ss_dssp CEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEE--CCSSCTTSCC---
T ss_pred EEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCcc--ccccCccceecCc
Confidence 45667765333223357777778899999999986542 444 3578899875532222 222 1
Q ss_pred ---CCccCCCCCCCCcEEEEe
Q 026104 75 ---SRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 75 ---~~~L~~y~i~dg~~IhVv 92 (243)
-.||+.|++.||++|-++
T Consensus 88 wkrLNTL~HY~V~dgatl~l~ 108 (111)
T 4e71_A 88 WKRVNTLMHYNVRDGATLILS 108 (111)
T ss_dssp CCCCCBHHHHTCCTTCEEEEE
T ss_pred ceEecchhhcCCCCCCEEEEE
Confidence 148899999999998765
No 138
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=94.33 E-value=0.4 Score=37.23 Aligned_cols=84 Identities=15% Similarity=0.102 Sum_probs=61.9
Q ss_pred CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (243)
Q Consensus 10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I 89 (243)
....++|.|...+ +....+||..+.||.+|..-|... |.++..-.|.--. ..+.+. ..+.+++|.+.++.+...|
T Consensus 40 ~~~~t~IqIRlPd--G~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~f-Prk~l~-~~d~~~TL~e~gL~psa~L 114 (124)
T 1wj4_A 40 NGPKAQLMLRYPD--GKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNF-PRRKLS-HLDYDITLQEAGLCPQETV 114 (124)
T ss_dssp SSCEEEEEEECTT--SCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSS-SCCEET-SSCSSSCTTTTTCCSSBCC
T ss_pred CCCcEEEEEECCC--CCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCC-CCcCCc-cCCCCCCHHHCCCCCceEE
Confidence 3457888888544 457899999999999999999887 7776665554311 233321 1456899999999999999
Q ss_pred EEeecCCCc
Q 026104 90 HVIDLDPSS 98 (243)
Q Consensus 90 hVvD~~p~s 98 (243)
+|....+.|
T Consensus 115 iv~~~d~~~ 123 (124)
T 1wj4_A 115 FVQESGPSS 123 (124)
T ss_dssp EEEECCSTT
T ss_pred EEEEccCCC
Confidence 998876543
No 139
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=94.18 E-value=0.079 Score=39.94 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=42.9
Q ss_pred eEEEEEEeCCCC-----CceeEEEcCCCCCHHHHHHHHHhHhCCCCC-----ceEEEEEcCCCCeee
Q 026104 13 SVLLRVTHSNLK-----SFSADVRFPLQMSVESVKDKLWRKCGTSVN-----SMSLELYDDTNTKVA 69 (243)
Q Consensus 13 ~v~v~It~s~~~-----~~~~e~r~~~~~TV~~LK~KLe~~tGipp~-----~qrL~l~~~~g~~~~ 69 (243)
.|+|.|...+.. .-..-++++++++..+|..||..+.++++. ..+|.++|.+|..+.
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vt 71 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVV 71 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEE
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEE
Confidence 477777544221 224678899999999999999999997632 368999999888765
No 140
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=94.04 E-value=0.27 Score=38.12 Aligned_cols=81 Identities=15% Similarity=0.229 Sum_probs=51.8
Q ss_pred ceEEEEEEeCCC-CCceeEEEcCCCCCHHHHHHHHHhH--hCCC------CCceEEEEEcCC-CCeeeecCCC-------
Q 026104 12 ESVLLRVTHSNL-KSFSADVRFPLQMSVESVKDKLWRK--CGTS------VNSMSLELYDDT-NTKVAALTDN------- 74 (243)
Q Consensus 12 ~~v~v~It~s~~-~~~~~e~r~~~~~TV~~LK~KLe~~--tGip------p~~qrL~l~~~~-g~~~~~l~~d------- 74 (243)
..+.|++..... ....+..++-.-.||.|+|+||-.. -|+| +.++.|+++.+. |..+.. +.|
T Consensus 12 ~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~-D~D~ts~~~~ 90 (117)
T 4e74_A 12 KTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQ-DEDITTKIEN 90 (117)
T ss_dssp CEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEEC-SSSTTCCC--
T ss_pred EEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEee-cCCCccEecC
Confidence 346666643211 1224667777889999999997654 2444 357899998764 333211 111
Q ss_pred ----CCccCCCCCCCCcEEEEee
Q 026104 75 ----SRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 75 ----~~~L~~y~i~dg~~IhVvD 93 (243)
-.||+.|++.||++|-++-
T Consensus 91 ~wkrLNTL~HY~V~dgatl~l~~ 113 (117)
T 4e74_A 91 DWKRLNTLAHYQVPDGSVVALVS 113 (117)
T ss_dssp -CCCCCBHHHHTCCTTCEEEEEE
T ss_pred cceEeccccccCCCCCCEEEEEe
Confidence 1388999999999998863
No 141
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=94.02 E-value=0.0095 Score=54.68 Aligned_cols=75 Identities=7% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (243)
Q Consensus 10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I 89 (243)
....|+|.|.. +......++.++.++..|++....+.|+++.++++.| +|+.+ .++.|..++++++|.+|
T Consensus 27 ~~~~i~lkv~~---~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f---~G~~i----~~~~Tp~~l~med~d~i 96 (389)
T 4da1_A 27 PETHINLKVSD---GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQAPEDLDMEDNDII 96 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEEec---CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE---CCEEc----CCCCCHHHcCCCCCCEe
Confidence 34568888863 3346778999999999999999999999999999999 68774 57789999999999999
Q ss_pred EEeec
Q 026104 90 HVIDL 94 (243)
Q Consensus 90 hVvD~ 94 (243)
+|.-.
T Consensus 97 ~~~~~ 101 (389)
T 4da1_A 97 EAHRE 101 (389)
T ss_dssp -----
T ss_pred eeeec
Confidence 88653
No 142
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=93.61 E-value=0.61 Score=36.55 Aligned_cols=65 Identities=23% Similarity=0.336 Sum_probs=45.0
Q ss_pred eeEEEcCCCCCHHHHHHHHHhH-h---CCC----CCceEEEEEcCCCCeeeecCC--------C----CCccCCCCCCCC
Q 026104 27 SADVRFPLQMSVESVKDKLWRK-C---GTS----VNSMSLELYDDTNTKVAALTD--------N----SRPLGFYSPLQG 86 (243)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~-t---Gip----p~~qrL~l~~~~g~~~~~l~~--------d----~~~L~~y~i~dg 86 (243)
....++-.-.||.|+|+||-.. . |+| +.+|.|+++.+.+..+. .+. + -.||..|++.||
T Consensus 40 ~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L-~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 40 NISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKEL-LDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEE-CSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred ceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCccee-eccCCcceEecCCeeEeccccccCCCCC
Confidence 4667777889999999996443 3 776 45788888755432221 111 1 237889999999
Q ss_pred cEEEEe
Q 026104 87 YRLHVI 92 (243)
Q Consensus 87 ~~IhVv 92 (243)
++|-++
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 998776
No 143
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=93.41 E-value=0.81 Score=34.56 Aligned_cols=81 Identities=12% Similarity=0.082 Sum_probs=59.9
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
....+|.|...+ +....+||+.+.||.+|.+-|....+.+...-.|.- .--+......+.+++|.+.++.+...|+
T Consensus 11 ~~~t~IqIRlpd--G~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t--~fPrk~l~~~d~~~TL~elgL~psa~L~ 86 (109)
T 2dzk_A 11 STIARIQFRLPD--GSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLAT--MFPRREFTREDYKRRLLDLELAPSASVV 86 (109)
T ss_dssp SCCEEEEEECSS--SCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEEC--SSSCCBCCTTTTTSBTGGGTCSSEEEEE
T ss_pred CCcEEEEEECCC--CCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEc--CCCCcCCcccccCCCHHHCCCCCceEEE
Confidence 346888888544 457899999999999999999998887655555443 2223322222568999999999999999
Q ss_pred EeecC
Q 026104 91 VIDLD 95 (243)
Q Consensus 91 VvD~~ 95 (243)
|....
T Consensus 87 v~~~~ 91 (109)
T 2dzk_A 87 LLPAG 91 (109)
T ss_dssp EECCS
T ss_pred EEECc
Confidence 98863
No 144
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=93.12 E-value=0.072 Score=38.37 Aligned_cols=42 Identities=7% Similarity=0.022 Sum_probs=37.1
Q ss_pred eEEEcCCCCCHHHHHHHHHhHhCCC-----CCceEEEEEcCCCCeee
Q 026104 28 ADVRFPLQMSVESVKDKLWRKCGTS-----VNSMSLELYDDTNTKVA 69 (243)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGip-----p~~qrL~l~~~~g~~~~ 69 (243)
.-++++++++..+|..||..+.+.. ....+|.++|.+|..+.
T Consensus 4 ~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vt 50 (77)
T 1pqs_A 4 FTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVV 50 (77)
T ss_dssp EEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEE
Confidence 4688999999999999999999976 47789999999888765
No 145
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=92.22 E-value=0.19 Score=39.56 Aligned_cols=38 Identities=11% Similarity=0.118 Sum_probs=31.5
Q ss_pred EEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCC
Q 026104 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVN 54 (243)
Q Consensus 15 ~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~ 54 (243)
.|.|+ .+.+....++++.+.||.+++.-|-...||++.
T Consensus 13 ~LkV~--llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~ 50 (128)
T 2kc2_A 13 PLKIR--MLDGTVKTIMVDDSKTVTDMLMTICARIGITNH 50 (128)
T ss_dssp EEEEE--CTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCC
T ss_pred cEEEE--cCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCc
Confidence 46666 344567889999999999999999999999954
No 146
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=91.28 E-value=0.83 Score=34.42 Aligned_cols=81 Identities=15% Similarity=0.067 Sum_probs=58.8
Q ss_pred CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
...++|.|...+ +....+||..+.||.+|..=|... +..+..-+|.--. -.+.+ -.+.+++|.+.|+.+...|+
T Consensus 21 ~~~~~IqiRlpd--G~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~f-Prk~l--~~d~~~TL~e~gL~p~a~L~ 94 (109)
T 2cr5_A 21 EEVVTVALRCPN--GRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSF-PRRAL--EVEGGSSLEDIGITVDTVLN 94 (109)
T ss_dssp SSEEEEEEECTT--SCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSS-SCCBC--CCCSSCBHHHHTCSSCEEEE
T ss_pred CCcEEEEEECCC--CCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCC-CCcCC--CCCCCCCHHHcCCCCCeEEE
Confidence 457899998544 457899999999999999999865 5555555544311 23332 12568999999999999999
Q ss_pred EeecCCC
Q 026104 91 VIDLDPS 97 (243)
Q Consensus 91 VvD~~p~ 97 (243)
|.+..+.
T Consensus 95 Ve~~~~~ 101 (109)
T 2cr5_A 95 VEEKEQS 101 (109)
T ss_dssp EEECCCC
T ss_pred EEeCCCC
Confidence 9887653
No 147
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=90.96 E-value=0.25 Score=38.82 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=32.4
Q ss_pred eEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEc
Q 026104 28 ADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYD 62 (243)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~ 62 (243)
...|+..++|+.+||..+...+|+|+++|||....
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~ 92 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQ 92 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEee
Confidence 46799999999999999999999999999999964
No 148
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=89.07 E-value=3.5 Score=30.66 Aligned_cols=75 Identities=12% Similarity=0.092 Sum_probs=61.2
Q ss_pred CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (243)
Q Consensus 10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I 89 (243)
....|+|.|+. .+...-.++-.+..+..|..-.....|+++++.|+.| +|..+ ..+.|-.+.++++|..|
T Consensus 18 ~~~~IniKV~~---~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlf---DG~rI----~~~~TP~~L~meD~DiI 87 (95)
T 2l76_A 18 TPRLFPLKIRC---RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLF---GETEL----SPTATPRTLKLGVADII 87 (95)
T ss_dssp CCCCEEEEEEC---SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEE---TTEEC----CTTSCHHHHTCCSSCEE
T ss_pred CCCeEEEEEEc---CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEE---CCcCC----CCCCCHhHcCCCCCCEE
Confidence 34459999973 2345667788999999999999999999999999999 78764 56777788899999999
Q ss_pred EEeec
Q 026104 90 HVIDL 94 (243)
Q Consensus 90 hVvD~ 94 (243)
-|.-+
T Consensus 88 D~~~~ 92 (95)
T 2l76_A 88 DCVVL 92 (95)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 88765
No 149
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=88.47 E-value=2.9 Score=40.90 Aligned_cols=82 Identities=13% Similarity=0.183 Sum_probs=53.0
Q ss_pred CceEEEEEEeCCC----CCceeEEEcCCCCCHHHHHHHHHhH--hCCC------CCceEEEEEcCCCCeeeecCC-C---
Q 026104 11 DESVLLRVTHSNL----KSFSADVRFPLQMSVESVKDKLWRK--CGTS------VNSMSLELYDDTNTKVAALTD-N--- 74 (243)
Q Consensus 11 ~~~v~v~It~s~~----~~~~~e~r~~~~~TV~~LK~KLe~~--tGip------p~~qrL~l~~~~g~~~~~l~~-d--- 74 (243)
...+.|.|..... ....+..++-.-.||.|+|+||-.. -|+| +.++.|+.+.+.+..+. |.+ |
T Consensus 255 ~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~i-L~D~D~ts 333 (644)
T 3hm6_X 255 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLI-LSDEDVTS 333 (644)
T ss_dssp CCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEE-ECSSSTTC
T ss_pred ceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCcee-ecccCccc
Confidence 3456777753211 1234677788889999999998743 2444 36778888765332221 212 2
Q ss_pred --------CCccCCCCCCCCcEEEEee
Q 026104 75 --------SRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 75 --------~~~L~~y~i~dg~~IhVvD 93 (243)
-.||+.|+|.||++|-++-
T Consensus 334 ~~~~~wkrLNTL~HY~V~dga~v~L~p 360 (644)
T 3hm6_X 334 EVQGLWRRLNTLQHYKVPDGATVALVP 360 (644)
T ss_dssp CEETTEEECCBTTTTTCCTTCEEEEEE
T ss_pred eecCcceeecchhhcCCCCCcEEEEEe
Confidence 1489999999999998864
No 150
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=88.38 E-value=1.2 Score=40.08 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=49.2
Q ss_pred eeEEEcCCCCCHHHHHHHHHhHhC----CCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104 27 SADVRFPLQMSVESVKDKLWRKCG----TSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (243)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tG----ipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV 91 (243)
.-..+|++++||.+.+.+|.+... .++++=-|.+.+.+++.-..| +..++|.+|+++++..|+.
T Consensus 14 ~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl-~~~~~l~~y~~~~~~~l~~ 81 (371)
T 3ivf_A 14 VKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWL-EAGKALDYYMLRNGDTMEY 81 (371)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEEC-CTTSBGGGGTCCTTCEEEE
T ss_pred eEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEec-cCCCCHHHhCCCCCceeec
Confidence 567899999999999999866653 367777888877655543335 5567999999999987654
No 151
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=87.94 E-value=4.3 Score=39.58 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=54.4
Q ss_pred CceEEEEEEeCCC-CCceeEEEcCCCCCHHHHHHHHHhHh--CCC------CCceEEEEEcCC-CCeeeecCCCC-----
Q 026104 11 DESVLLRVTHSNL-KSFSADVRFPLQMSVESVKDKLWRKC--GTS------VNSMSLELYDDT-NTKVAALTDNS----- 75 (243)
Q Consensus 11 ~~~v~v~It~s~~-~~~~~e~r~~~~~TV~~LK~KLe~~t--Gip------p~~qrL~l~~~~-g~~~~~l~~d~----- 75 (243)
...+.|.|..... ....+..++-.-.||.|+|+||-... |+| +.++.|+.+.+. |..+. -+.|.
T Consensus 231 ~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL-~D~D~ts~~~ 309 (627)
T 3ig3_A 231 YKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIIL-QDEDITTKIE 309 (627)
T ss_dssp CCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEE-CSSSTTCCEE
T ss_pred ceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceee-ccCCcccccc
Confidence 3457777764322 12357778888999999999986542 443 467888888664 33321 12221
Q ss_pred ------CccCCCCCCCCcEEEEee
Q 026104 76 ------RPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 76 ------~~L~~y~i~dg~~IhVvD 93 (243)
.||..|+|.||++|-++-
T Consensus 310 ~~wkrLNTL~HY~V~Dga~v~L~p 333 (627)
T 3ig3_A 310 CDWKRVNSLAHYQVTDGSLVALVP 333 (627)
T ss_dssp TTEEECCBTTTTTCCTTCEEEEEE
T ss_pred CceeEecchhhcCCCCCceEEEEe
Confidence 389999999999998874
No 152
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=81.42 E-value=5 Score=29.53 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=58.8
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
+.|.|-..+ .+...+++.|+.|+.|+=+.--.++|+++++=.|.+ .++.+ |-+.++..-|+.+|+.+.++-
T Consensus 10 m~v~Vl~~n--~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh---~~k~l----DLSlpfRlsgLpnnAkLELv~ 80 (90)
T 2al3_A 10 SAVSVLAPN--GRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKF---QRTVL----DLSLQWRFANLPNNAKLEMVP 80 (90)
T ss_dssp CCEEEECTT--SCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEE---TTEEE----SSSCBHHHHCCCSSCEEEEEC
T ss_pred cEEEEEcCC--CcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEe---CCEec----cccceeEecCCCCCCEEEEEE
Confidence 467776443 357788899999999999999999999998888887 45542 667888889999999999987
Q ss_pred cC
Q 026104 94 LD 95 (243)
Q Consensus 94 ~~ 95 (243)
..
T Consensus 81 ~s 82 (90)
T 2al3_A 81 VS 82 (90)
T ss_dssp SS
T ss_pred cc
Confidence 64
No 153
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.44 E-value=7.2 Score=28.58 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=59.3
Q ss_pred cccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCC
Q 026104 7 QIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG 86 (243)
Q Consensus 7 ~~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg 86 (243)
..+++.+|+|.|- ....-..-.|++|..++.+|=--|-.++-..|+.-.|-=-+..+.. .+-+++|.+||++.
T Consensus 4 ~~~PE~TvRLvVN--y~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~----LdLskSLndlgirE- 76 (91)
T 2daj_A 4 GSSGEKTVRVVIN--FKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEP----LDLTKSLNDLGLRE- 76 (91)
T ss_dssp CSCCCSCEEEEEE--ETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCB----CCTTSCHHHHTCSE-
T ss_pred CCCCccEEEEEEe--ecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcc----cchhcchhhhhhhh-
Confidence 3467788999884 2222245679999999999999999999999987765431122222 36789999999986
Q ss_pred cEEEEeecCC
Q 026104 87 YRLHVIDLDP 96 (243)
Q Consensus 87 ~~IhVvD~~p 96 (243)
+.+.|+.-
T Consensus 77 --Lya~d~~~ 84 (91)
T 2daj_A 77 --LYAMDVNR 84 (91)
T ss_dssp --EEEEECCC
T ss_pred --hheecccc
Confidence 78888764
No 154
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=77.69 E-value=1.9 Score=41.23 Aligned_cols=36 Identities=11% Similarity=0.061 Sum_probs=32.8
Q ss_pred eEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcC
Q 026104 28 ADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDD 63 (243)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~ 63 (243)
...|+..++|+.+||+++....|+|+++|||.+...
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~ 73 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQA 73 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEc
Confidence 357999999999999999999999999999998643
No 155
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=77.58 E-value=8.6 Score=27.95 Aligned_cols=45 Identities=7% Similarity=0.095 Sum_probs=34.2
Q ss_pred ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEE
Q 026104 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELY 61 (243)
Q Consensus 12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~ 61 (243)
+.++|.+--.. -..-+|+|++++..+||.||.+...+ +.+.|.++
T Consensus 11 ~~~KVK~yy~D---DIiAIrvP~di~~~~L~dKi~~RLk~--~~~~l~~y 55 (85)
T 1ip9_A 11 KTTKIKFYYKD---DIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTK 55 (85)
T ss_dssp CCEEEEECBTT---CCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEEC
T ss_pred CceEEEEEecC---cEEEEECCCCCCHHHHHHHHHHHhcc--cceEEEEe
Confidence 34666664222 36789999999999999999999999 46666665
No 156
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=74.03 E-value=5.8 Score=30.57 Aligned_cols=73 Identities=11% Similarity=0.079 Sum_probs=49.3
Q ss_pred ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhH-hCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRK-CGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (243)
Q Consensus 12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~-tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih 90 (243)
...+|.|...+ +..+.+||..+.||.+|.+-|... .|.....-.|.- .--+.. +.+++++|.+.|+.+.+.|+
T Consensus 51 ~~t~IqIRlpd--G~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t--~fPrk~--l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 51 PTTNIQIRLAD--GGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMT--TFPNKE--LADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp CCCCEEEEETT--TTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEE--TTTTEE--CCSTTCBHHHHTCSSCEEEE
T ss_pred CcEEEEEECCC--CCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEec--CCCCCC--CCCCCCcHHHCCCcCceEEE
Confidence 35666666444 347899999999999999999886 344444444432 222332 44678999999998866543
No 157
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=73.79 E-value=17 Score=24.61 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=38.7
Q ss_pred EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
++|+|- ......++.++...|+.+|.+.| |+++....+.+ +|..+ ..+. .+++|.+|-++
T Consensus 5 m~i~vN---g~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vav---N~~~v---~~~~------~L~~gD~V~ii 64 (70)
T 1ryj_A 5 MKFTVI---TDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKK---NGQIV---IDEE------EIFDGDIIEVI 64 (70)
T ss_dssp EEEEEE---ETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEE---TTEEC---CTTS------BCCTTCEEEEE
T ss_pred EEEEEe---CccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEE---CCEEC---CCcc------cCCCCCEEEEE
Confidence 556663 22223456678889999999987 56766655554 56543 2222 68899998877
No 158
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=72.66 E-value=24 Score=25.72 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=41.9
Q ss_pred CCceEEEEEEeCCCCCceeEEEcC--CCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeee
Q 026104 10 GDESVLLRVTHSNLKSFSADVRFP--LQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA 69 (243)
Q Consensus 10 ~~~~v~v~It~s~~~~~~~e~r~~--~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~ 69 (243)
.+..+.|.|+...- ....+++ ...|+.+|...+...+|++ ..+|.+.|.+|..+.
T Consensus 3 ~~~~v~lkV~f~ge---~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY~DEenD~v~ 59 (87)
T 2bkf_A 3 MEPQVTLNVTFKNE---IQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVS 59 (87)
T ss_dssp CCCCEEEEEEETTE---EEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEECTTSCEEE
T ss_pred CCceEEEEEEEcCC---eeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEEEcCCCCEEE
Confidence 34567888876542 3333444 4999999999999999997 779999998888765
No 159
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=68.94 E-value=14 Score=28.89 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHhHhCCCCCceEEEEEc-CCCCeeeec---CCCCCccCCCCCCCCcEEEEeecC
Q 026104 35 QMSVESVKDKLWRKCGTSVNSMSLELYD-DTNTKVAAL---TDNSRPLGFYSPLQGYRLHVIDLD 95 (243)
Q Consensus 35 ~~TV~~LK~KLe~~tGipp~~qrL~l~~-~~g~~~~~l---~~d~~~L~~y~i~dg~~IhVvD~~ 95 (243)
.+|+++|=++|....|.+- .+++.+ ++.+.+..- ++-.++|.+.|++.|..|.|.|-+
T Consensus 19 ~~TL~dLV~~l~~~~gy~~---eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DEd 80 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ---DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDEE 80 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS---SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEESC
T ss_pred ccCHHHHHHHHHHhcCCCC---cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEccc
Confidence 5799999988988889763 233332 122233211 233789999999999999999964
No 160
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=66.35 E-value=35 Score=30.02 Aligned_cols=35 Identities=3% Similarity=0.023 Sum_probs=31.4
Q ss_pred ceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEE
Q 026104 26 FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLEL 60 (243)
Q Consensus 26 ~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l 60 (243)
.....-..+..|+.+++++++..||+++++|.|.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~ 356 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQTKIISSNQELIY 356 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEES
T ss_pred eEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHh
Confidence 34556778999999999999999999999999998
No 161
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=63.42 E-value=0.63 Score=34.88 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=40.2
Q ss_pred eEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEE-cCCCCeee-----ec-----CCCCCccCCCCCCCCcEEEEeecC
Q 026104 28 ADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELY-DDTNTKVA-----AL-----TDNSRPLGFYSPLQGYRLHVIDLD 95 (243)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~-~~~g~~~~-----~l-----~~d~~~L~~y~i~dg~~IhVvD~~ 95 (243)
..+.+++++|+.+|=+.|...--.--..=-|... ++.++.+. .| .+=+++|...|+.+|..|+|.|..
T Consensus 7 ~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD~~ 85 (98)
T 1y8x_B 7 QNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVT 85 (98)
T ss_dssp CCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEECTT
T ss_pred EEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEECCC
Confidence 4567899999999988887731111101012221 11122221 01 112578999999999999999843
No 162
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=61.43 E-value=32 Score=25.71 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=41.5
Q ss_pred CCceEEEEEEeCCCCCceeEEEc--CCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeee
Q 026104 10 GDESVLLRVTHSNLKSFSADVRF--PLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA 69 (243)
Q Consensus 10 ~~~~v~v~It~s~~~~~~~e~r~--~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~ 69 (243)
.+-.|.|.|+...- ..-.++ ....|+.+|...+...+|++ ..+|.+.|.+|..+.
T Consensus 11 m~~~v~lkV~f~ge---~~rF~Vs~~~~~tweel~~mvk~~f~L~--~~~IkY~DEenD~V~ 67 (101)
T 1wj6_A 11 MEPQVTLNVTFKNE---IQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVS 67 (101)
T ss_dssp SCSCEEEEEEETTE---EEEEEESCTTTSCHHHHHHHHHHHHCCS--SBCCEEECTTSCEEC
T ss_pred cCccEEEEEEEcCC---eeEEEecCCCCCCHHHHHHHHHHHcCCC--ceEEEEecCCCCEEE
Confidence 34468888876542 333334 45999999999999999997 678889998888764
No 163
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=60.73 E-value=6.7 Score=38.58 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=33.2
Q ss_pred ceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEE
Q 026104 26 FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELY 61 (243)
Q Consensus 26 ~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~ 61 (243)
...+..+.+..|+..|+.+|+..|||+++.|.|.+.
T Consensus 322 ~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~ 357 (676)
T 3qa8_A 322 RVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQA 357 (676)
T ss_dssp CCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESS
T ss_pred ccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhc
Confidence 456788999999999999999999999999999983
No 164
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=60.05 E-value=23 Score=25.53 Aligned_cols=52 Identities=6% Similarity=0.066 Sum_probs=36.0
Q ss_pred EEEcCCC-CCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 29 DVRFPLQ-MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 29 e~r~~~~-~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
++.++.. .||.+|.+.| |++++...+.+ +|..+. .....+..+++|.+|-++
T Consensus 29 ~~el~~~~~Tv~dLL~~L----~~~~~~vaVav---Ng~iV~-----~~~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 29 DVKWKKDTGTIQDLLASY----QLENKIVIVER---NKEIIG-----KERYHEVELCDRDVIEIV 81 (87)
T ss_dssp EECCSSSCCBHHHHHHHT----TCTTSCCEEEE---TTEEEC-----GGGTTTSBCCSSSEEEEE
T ss_pred EEECCCCCCcHHHHHHHh----CCCCCCEEEEE---CCEECC-----hhhcCCcCCCCCCEEEEE
Confidence 5667787 9999999887 66776666555 565531 123345678899998877
No 165
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=56.11 E-value=29 Score=32.97 Aligned_cols=77 Identities=9% Similarity=0.043 Sum_probs=50.0
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCC---CCceEEE-EEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTS---VNSMSLE-LYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGip---p~~qrL~-l~~~~g~~~~~l~~d~~~L~~y~i~dg~~ 88 (243)
.++|+..++...-...++.++++-||++|.+.|....|++ ...+||. ++ +++....+ +++.+|...+-.....
T Consensus 339 ~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~--~~ki~ki~-~~~~~i~~i~d~~~~~ 415 (530)
T 2ylm_A 339 SFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIV--SYKIIGVH-QEDELLECLSPATSRT 415 (530)
T ss_dssp CEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEE--TTEEEEEE-CTTSBGGGSCCCTTCE
T ss_pred eEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEE--CCEEEEec-CCCcccccccccccce
Confidence 5777665555554467788999999999999999999998 4566652 32 55544333 4555665554322444
Q ss_pred EEEe
Q 026104 89 LHVI 92 (243)
Q Consensus 89 IhVv 92 (243)
|.+.
T Consensus 416 ~rie 419 (530)
T 2ylm_A 416 FRIE 419 (530)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 166
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=55.14 E-value=9 Score=29.47 Aligned_cols=34 Identities=9% Similarity=-0.007 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHhHh-CCCCCceEEEEEcCCCCeee
Q 026104 36 MSVESVKDKLWRKC-GTSVNSMSLELYDDTNTKVA 69 (243)
Q Consensus 36 ~TV~~LK~KLe~~t-Gipp~~qrL~l~~~~g~~~~ 69 (243)
.|..+|+.|+..++ ++....-.|.++|.+|..+.
T Consensus 57 ~s~~~L~~kV~~lFp~L~~~~f~l~YkDEdGDlIt 91 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPALRPGGFQAHYRAERGDLVA 91 (117)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEE
T ss_pred CCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEE
Confidence 49999999999999 77777889999999998875
No 167
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=55.09 E-value=22 Score=23.58 Aligned_cols=52 Identities=10% Similarity=0.135 Sum_probs=34.9
Q ss_pred EEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 29 DVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 29 e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
++.++...||.+|.+.| ++++....+.+ +|..+. .....+..+++|.+|.++
T Consensus 9 ~~~~~~~~tv~~ll~~l----~~~~~~v~vav---N~~~v~-----~~~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 9 AMQCAAGQTVHELLEQL----DQRQAGAALAI---NQQIVP-----REQWAQHIVQDGDQILLF 60 (66)
T ss_dssp EECCCTTCCHHHHHHHH----TCCCSSEEEEE---TTEEEC-----HHHHTTCCCCTTEEECEE
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCCEEEEE---CCEECC-----chhcCCcCCCCCCEEEEE
Confidence 45678889999999988 56666665555 555431 112234568899988776
No 168
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=51.23 E-value=9.4 Score=28.59 Aligned_cols=34 Identities=9% Similarity=0.003 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHhHh-CCCCCceEEEEEcCCCCeee
Q 026104 36 MSVESVKDKLWRKC-GTSVNSMSLELYDDTNTKVA 69 (243)
Q Consensus 36 ~TV~~LK~KLe~~t-Gipp~~qrL~l~~~~g~~~~ 69 (243)
.|..+|+.++..++ ++....-.|.++|.+|..+.
T Consensus 42 ~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlIt 76 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVA 76 (102)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEE
T ss_pred ccHHHHHHHHHHHccccCCCcEEEEEECCCCCEEE
Confidence 48999999999996 67767789999999998875
No 169
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=50.82 E-value=43 Score=21.99 Aligned_cols=51 Identities=10% Similarity=0.133 Sum_probs=34.3
Q ss_pred EEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 29 DVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 29 e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
++.+ ...||.+|.+.| ++++....+.+ +|..+. ...-.+..+++|.+|.++
T Consensus 8 ~~~~-~~~tv~~ll~~l----~~~~~~v~vav---N~~~v~-----~~~~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 8 PRPL-EGKTLKEVLEEM----GVELKGVAVLL---NEEAFL-----GLEVPDRPLRDGDVVEVV 58 (64)
T ss_dssp EECC-TTCCHHHHHHHH----TBCGGGEEEEE---TTEEEE-----GGGCCCCCCCTTCEEEEE
T ss_pred EEEc-CCCcHHHHHHHc----CCCCCcEEEEE---CCEECC-----ccccCCcCCCCCCEEEEE
Confidence 4456 779999999888 56666666555 565542 112334568899998887
No 170
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=43.67 E-value=71 Score=23.05 Aligned_cols=36 Identities=8% Similarity=-0.068 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeee
Q 026104 34 LQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA 69 (243)
Q Consensus 34 ~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~ 69 (243)
...+..+|..+++.+..++...-.|.+.|.+|..+.
T Consensus 26 ~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D~dGDLlp 61 (86)
T 1wmh_B 26 SVSGFQEFSRLLRAVHQIPGLDVLLGYTDAHGDLLP 61 (86)
T ss_dssp GCCCHHHHHHHHHHHTTCTTCCCEEEEECTTSCEEE
T ss_pred CCCCHHHHHHHHHHHcCCCCCCEEEEEECCCCCEee
Confidence 348999999999999999888899999998898775
No 171
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=43.62 E-value=30 Score=25.12 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=31.9
Q ss_pred eeEEEcC-CCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCC
Q 026104 27 SADVRFP-LQMSVESVKDKLWRKCGTSVNSMSLELYDDTNT 66 (243)
Q Consensus 27 ~~e~r~~-~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~ 66 (243)
...+-|+ .+++|.+||..|-...+.-..+-.|.++++..+
T Consensus 19 ~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~ 59 (86)
T 2c7h_A 19 YDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTK 59 (86)
T ss_dssp EEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSC
T ss_pred cceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCC
Confidence 4455566 689999999999999888878889999876433
No 172
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=39.60 E-value=90 Score=21.38 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=34.8
Q ss_pred eeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
..++.++...|+.+|=+ ..|+|++.. +.+. +|..+ ..|. +.+|.+|-|+-
T Consensus 12 ~~~~ev~~g~Tv~dLL~----~Lgl~~~~V-vV~v--NG~~v---~~d~-------~l~GD~VeIv~ 61 (74)
T 2l32_A 12 TSEVAVDDDGTYADLVR----AVDLSPHEV-TVLV--DGRPV---PEDQ-------SVEVDRVKVLR 61 (74)
T ss_dssp EEEEECSTTCSHHHHHH----TTCCCSSCC-CEEC--CCCCC---CTTS-------SSCCCCEEECS
T ss_pred ceeEEcCCCCcHHHHHH----HcCCCcceE-EEEE--CCEEC---CHHH-------CCCCCEEEEEE
Confidence 45678999999998754 569999988 4554 67653 2333 23588888875
No 173
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=36.07 E-value=60 Score=22.20 Aligned_cols=52 Identities=12% Similarity=0.127 Sum_probs=37.0
Q ss_pred EEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 29 DVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 29 e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++.+ ...||.+|-+.| |+++...-+.+ +|..+. .....++.+++|.+|-|+-
T Consensus 9 ~~e~-~~~Tl~~LL~~l----~~~~~~vAV~v---Ng~iVp-----r~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 9 QREV-QSASVAALMTEL----DCTGGHFAVAL---NYDVVP-----RGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp EECC-CCSBHHHHHHHT----TCCSSSCEEEE---SSSEEC-----HHHHTTCBCCTTCEEEEEC
T ss_pred EEEc-CCCcHHHHHHHc----CCCCCcEEEEE---CCEECC-----hHHcCcccCCCCCEEEEEc
Confidence 4456 779999998755 78887777666 676642 2234566788999998885
No 174
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=34.19 E-value=98 Score=22.57 Aligned_cols=70 Identities=4% Similarity=0.077 Sum_probs=48.7
Q ss_pred ceEEEEEEeCCCC-CceeEEEcCCCCCHHHHHHHHH---hHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104 12 ESVLLRVTHSNLK-SFSADVRFPLQMSVESVKDKLW---RKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY 87 (243)
Q Consensus 12 ~~v~v~It~s~~~-~~~~e~r~~~~~TV~~LK~KLe---~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~ 87 (243)
..|+|.|...... ++...+.++...||.++=+.+- ....|......+.++ |+.+ . .++.+++|.
T Consensus 11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vn---g~~v----~-----~d~~L~dGD 78 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIF---SRPI----K-----LTDVLKEGD 78 (97)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEE---ECSC----C-----TTCBCCTTC
T ss_pred ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEc---CEEC----C-----CCccCCCCC
Confidence 3678888655433 3467788999999999987764 345666667777773 5543 1 455688999
Q ss_pred EEEEee
Q 026104 88 RLHVID 93 (243)
Q Consensus 88 ~IhVvD 93 (243)
+|-|.-
T Consensus 79 RVEIyr 84 (97)
T 2hj1_A 79 RIEIYR 84 (97)
T ss_dssp EEEECC
T ss_pred EEEEEe
Confidence 988864
No 175
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=31.97 E-value=1.6e+02 Score=21.92 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=56.0
Q ss_pred eEEEEEEeCCCC-CceeEEEcCCCCCHHHHHHHHHhHhCCCCCc--eEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104 13 SVLLRVTHSNLK-SFSADVRFPLQMSVESVKDKLWRKCGTSVNS--MSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (243)
Q Consensus 13 ~v~v~It~s~~~-~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~--qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I 89 (243)
.++|+|+.-++. +....+|+.-+.-|+.|=-||-+...++-+. --|-- +..+.. |..-..+|..||++..+.+
T Consensus 19 eL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW--~~k~~W--Llkt~~tLDkygiqADa~L 94 (102)
T 2kmc_A 19 ELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWW--EQKRCW--LLKTHWTLDKCGVQADANL 94 (102)
T ss_dssp EEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEE--TTTTEE--ECCTTSBHHHHTCCTTSCE
T ss_pred EEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhh--hhhchh--hhhhhhhhhhhceeeeeee
Confidence 488888865553 3567889999999999999999887776543 34443 222222 6688899999999999888
Q ss_pred EEe
Q 026104 90 HVI 92 (243)
Q Consensus 90 hVv 92 (243)
|..
T Consensus 95 ~ft 97 (102)
T 2kmc_A 95 LFT 97 (102)
T ss_dssp EEE
T ss_pred ecc
Confidence 765
No 176
>2kss_A Carotenogenesis protein CARS; antirepressor, activator, carotenoid biosynthesis, transcription, transcription regulation, transcription REGU; NMR {Myxococcus xanthus}
Probab=29.70 E-value=8.6 Score=27.98 Aligned_cols=38 Identities=26% Similarity=0.755 Sum_probs=28.5
Q ss_pred CCCCCCCEEEEcCCCceeEE--EEecccCCCCCccEEEEEEeCCC
Q 026104 157 SNITVGDRCEVDPGAKRGVV--KYVGQAESIAPGFWVGIQYDEPL 199 (243)
Q Consensus 157 ~~~~vG~rv~v~~~~~~G~v--ryvG~~~~~~~g~w~GVelDep~ 199 (243)
+...+|..|.|.+..+-|+| ||.| -.|+.+|.-||+|-
T Consensus 36 apvrig~~v~iv~~s~~~si~~rflg-----~sgivv~lvfddp~ 75 (106)
T 2kss_A 36 APVRIGAKVKVVPHSEDGTISQRFLG-----QTGIVVGLVFDDPA 75 (106)
T ss_dssp CSSCTTCEEECCSSCSSSCCCTTTTT-----CEEEEEECCCCCCT
T ss_pred CceEecceEEEeccccCCccChhhcC-----ccceEEEEEeCCch
Confidence 46789999999755666665 3443 26899999999995
No 177
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=28.34 E-value=1.9e+02 Score=21.64 Aligned_cols=79 Identities=13% Similarity=0.155 Sum_probs=49.5
Q ss_pred CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhH---------hCCCCCceEEEEEcCCCCeeeecCCCCCccCC
Q 026104 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRK---------CGTSVNSMSLELYDDTNTKVAALTDNSRPLGF 80 (243)
Q Consensus 10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~---------tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~ 80 (243)
.+..|.|.+= .-++.....+++.+.|+.+||+.|-.. .+-+.+.+=-.+ +.++. ...+.|+++.|.+
T Consensus 16 ~~~~v~v~~L--lPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~i-n~~~e-~Eel~DEsrrL~d 91 (108)
T 2v1y_A 16 MPPRILVECL--LPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSV-TQEAE-REEFFDETRRLCD 91 (108)
T ss_dssp CCSEEEEEEE--CTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEE-BTTSC-EEEECCTTSBGGG
T ss_pred CCCcEEEEEE--cCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEe-cCCce-EEEeEcCceEEEe
Confidence 4456777664 234467899999999999999977665 333444444333 22333 3346788888888
Q ss_pred CCCCCCcEEEEee
Q 026104 81 YSPLQGYRLHVID 93 (243)
Q Consensus 81 y~i~dg~~IhVvD 93 (243)
..+--+ .+.++.
T Consensus 92 v~pf~p-iLklve 103 (108)
T 2v1y_A 92 LRLFQP-FLKVIE 103 (108)
T ss_dssp SCBSSS-EEEEEC
T ss_pred ccccce-EEEEEe
Confidence 766543 244443
No 178
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=28.22 E-value=66 Score=24.26 Aligned_cols=39 Identities=26% Similarity=0.457 Sum_probs=26.0
Q ss_pred CCCCCCCEEEEc---CC-----CceeEEEEecccCC---CCCccEEEEEEeC
Q 026104 157 SNITVGDRCEVD---PG-----AKRGVVKYVGQAES---IAPGFWVGIQYDE 197 (243)
Q Consensus 157 ~~~~vG~rv~v~---~~-----~~~G~vryvG~~~~---~~~g~w~GVelDe 197 (243)
..+.+|+.|.+. ++ ...|.|.|+-+... ...| +||+|-+
T Consensus 40 ~~~~~G~~V~l~l~Lp~~~~~i~~~GkVvWi~p~~~~~~~p~G--~GVqF~~ 89 (117)
T 3cnr_A 40 KRYMLGDEVFLLLTLPDSSERLPVAGKVIWTTPAGAQGNRAAG--IGVQFPD 89 (117)
T ss_dssp SCCCTTCEEEEEEECTTCSCEEEEEEEEEEEECC------CCE--EEEECCS
T ss_pred CccCCCCEEEEEEEcCCCCceEEEEEEEEEecCCCCCCCCCCc--eEEEEec
Confidence 468999999884 33 35799999944321 1245 8999854
No 179
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=27.36 E-value=28 Score=23.90 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=30.9
Q ss_pred EEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104 29 DVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (243)
Q Consensus 29 e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv 92 (243)
++.++...||.+|.+.| |+++....+.+ +|+.+. . +..+++|.+|-++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~Vav---Ng~~v~---~------~~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKV---NGKVVL---E------DDEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEE---TTEEEC---S------SSCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEE---CCEECC---C------CCCcCCCCEEEEE
Confidence 34567789999998877 45665555555 565431 1 1567788776554
No 180
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=27.25 E-value=66 Score=33.67 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=44.1
Q ss_pred CCCCCCCEEEEc--CC----CceeEEEEecccCCCCCccEEEEEEeCCC-CccCcEECCEEeeecCCCceeeecCCCc
Q 026104 157 SNITVGDRCEVD--PG----AKRGVVKYVGQAESIAPGFWVGIQYDEPL-GKHNGIVKGVRYFECPPLHGAMVRPDKV 227 (243)
Q Consensus 157 ~~~~vG~rv~v~--~~----~~~G~vryvG~~~~~~~g~w~GVelDep~-GkndGs~~G~rYF~c~~~~G~Fv~~~~v 227 (243)
..+.+||||... .| ..+|||--+-.+ .....+.|-||+|. |-+ |+.| .|.+.+|.=|+++.|
T Consensus 1064 Q~F~LGDRVv~VqdsG~VPl~~kGTVVGi~~~---~~~~~ldVvFD~~F~~G~--tlgg----rcs~~RG~~v~~s~l 1132 (1155)
T 3pie_A 1064 QRFHLGDRVMYIQDSGKVPLHSKGTVVGYTSI---GKNVSIQVLFDNEIIAGN--NFGG----RLQTRRGLGLDSSFL 1132 (1155)
T ss_pred CcccCCCeEEEecCCCCCccccceEEEEEecC---CCceEEEEEeccCccCCC--cccc----cccccccccccHHHe
Confidence 469999999873 22 568998766443 34678999999996 432 2333 499999998877654
No 181
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=26.12 E-value=43 Score=23.34 Aligned_cols=53 Identities=9% Similarity=0.133 Sum_probs=35.6
Q ss_pred EEEcC--CCCCHHHHHHHHHhHhCCC-CCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104 29 DVRFP--LQMSVESVKDKLWRKCGTS-VNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (243)
Q Consensus 29 e~r~~--~~~TV~~LK~KLe~~tGip-p~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD 93 (243)
++.++ ...||.+|-+.| |++ +...-+.+ +|..+. ......+.+++|.+|-|+-
T Consensus 9 ~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVav---Ng~iVp-----r~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 9 PSTVDGAESLNVTELLSAL----KVAQAEYVTVEL---NGEVLE-----REAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp EEECSSCSCEEHHHHHHHH----TCSCTTTCCEEE---TTEECC-----TTHHHHCEECSSBCEEECC
T ss_pred EEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEE---CCEECC-----hHHcCcccCCCCCEEEEEe
Confidence 45567 779999998766 677 66666666 565531 2233456678888888874
No 182
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=25.93 E-value=21 Score=25.98 Aligned_cols=27 Identities=11% Similarity=0.310 Sum_probs=21.2
Q ss_pred cccCCcceeeecCHHHHhcchhhHHHHHHHh
Q 026104 105 LEDTSLVEKYTISEEEYSKRDGTFRKFKEKV 135 (243)
Q Consensus 105 l~d~s~veky~msee~Y~~r~dtvr~~kk~~ 135 (243)
|.|.+-.+-|.||-+||.+.+ +|||.+
T Consensus 48 LSdedF~~vFgMsr~eF~~LP----~WKq~~ 74 (88)
T 1ujs_A 48 LSQEEFYQVFGMTISEFDRLA----LWKRNE 74 (88)
T ss_dssp SCTTHHHHHHSSCHHHHTTSC----HHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHCh----HHHHHH
Confidence 566666667999999998866 798875
No 183
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=24.21 E-value=3.1e+02 Score=23.44 Aligned_cols=72 Identities=25% Similarity=0.388 Sum_probs=44.2
Q ss_pred hcCCCCCCCEEEEcC----CCceeEEEEecccCCCCCc-cEEEEEEeCCCCc-cCcEECCEEeeecCCCceeeecCCCc
Q 026104 155 LCSNITVGDRCEVDP----GAKRGVVKYVGQAESIAPG-FWVGIQYDEPLGK-HNGIVKGVRYFECPPLHGAMVRPDKV 227 (243)
Q Consensus 155 ~~~~~~vG~rv~v~~----~~~~G~vryvG~~~~~~~g-~w~GVelDep~Gk-ndGs~~G~rYF~c~~~~G~Fv~~~~v 227 (243)
....+++|+.|.|.. ....|+|.++++......+ +-+=+.++.|.++ --|.+ ..-.|......++.||.+.|
T Consensus 218 ~~~~i~~G~~v~v~~~~~~~~~~g~v~~i~~~~d~~~~~~~v~~~~~~~~~~l~~G~~-~~v~i~~~~~~~l~vP~~Av 295 (359)
T 3lnn_A 218 DLGHVYVGQSATVKFDAYDDPQPGKVRYVGQILDADTRTTKVRMVFDNPDGRLRPGMF-AQATFLSQPHEGIVVPMSAI 295 (359)
T ss_dssp GSTTCCTTCEEEEBCSSCSSCEEEEEEECCCCCCTTSCCEEEEEEEECSSCCCCTTCE-EEEEEECCCEEEEEEEGGGC
T ss_pred HHhhCCCCCeEEEEEcCCCCcEEEEEEEEecccCCCCcEEEEEEEecCCCCCcCCCCE-EEEEEecCCCCceEeCHHHh
Confidence 456799999999952 2579999999987552233 4566788877543 34443 22233444444555555544
No 184
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=22.35 E-value=2.1e+02 Score=20.13 Aligned_cols=22 Identities=9% Similarity=0.341 Sum_probs=17.5
Q ss_pred eEEEcCCCCCHHHHHHHHHhHh
Q 026104 28 ADVRFPLQMSVESVKDKLWRKC 49 (243)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~t 49 (243)
.++.++...||.+|.+.|....
T Consensus 29 ~~~e~~~~~Tv~~Ll~~L~~~~ 50 (98)
T 1vjk_A 29 EEIELPEGARVRDLIEEIKKRH 50 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhHC
Confidence 4566778899999999987663
No 185
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=20.28 E-value=1.1e+02 Score=22.58 Aligned_cols=38 Identities=11% Similarity=0.038 Sum_probs=29.1
Q ss_pred eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCC
Q 026104 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVN 54 (243)
Q Consensus 13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~ 54 (243)
+|+++.. +- ....+.+++.||..+++++|..+.++..+
T Consensus 11 vvkvf~~--Dg--ssksi~V~~~~Ta~dv~~~L~~K~~~~~~ 48 (100)
T 1wgr_A 11 VVKVYSE--DG--ACRSVEVAAGATARHVCEMLVQRAHALSD 48 (100)
T ss_dssp EEEEEET--TS--CEEEEEECTTCCHHHHHHHHHCSSSCCCC
T ss_pred EEEEEec--CC--CEEEEEECCCCcHHHHHHHHHHHcCCCCC
Confidence 5666652 33 35677889999999999999999988743
Done!