Query 026106
Match_columns 243
No_of_seqs 227 out of 1962
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:51:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026106.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026106hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03008 pepcterm_CAAX CAAX p 99.8 2.1E-18 4.6E-23 143.3 20.3 86 152-240 120-213 (222)
2 PF02517 Abi: CAAX protease se 99.8 5.5E-19 1.2E-23 127.5 11.5 86 149-234 4-90 (91)
3 COG1266 Predicted metal-depend 99.8 9.8E-16 2.1E-20 127.4 23.9 88 147-234 121-212 (226)
4 KOG4130 Prenyl protein proteas 98.9 1.2E-08 2.6E-13 84.2 9.4 85 152-236 131-236 (291)
5 COG4449 Predicted protease of 97.1 0.00033 7.1E-09 63.8 2.4 80 153-232 713-809 (827)
6 PF10086 DUF2324: Putative mem 95.5 1 2.3E-05 37.7 14.8 46 148-197 60-105 (223)
7 COG2339 prsW Membrane proteina 92.9 5.8 0.00013 34.3 16.5 30 53-82 35-64 (274)
8 PF13367 PrsW-protease: Protea 91.1 7.1 0.00015 31.5 14.8 36 203-238 130-174 (191)
9 COG4377 Predicted membrane pro 83.9 23 0.0005 29.2 12.7 71 149-224 77-149 (258)
10 PHA02758 hypothetical protein; 48.5 49 0.0011 27.7 5.3 20 217-236 269-288 (321)
11 PTZ00359 hypothetical protein; 44.5 2.6E+02 0.0056 25.8 9.9 16 13-28 249-264 (443)
12 PF05437 AzlD: Branched-chain 33.7 1.6E+02 0.0035 20.7 5.7 28 203-230 65-92 (99)
13 PF02028 BCCT: BCCT family tra 33.2 3.3E+02 0.0072 25.7 9.0 68 153-220 81-154 (485)
14 PRK10408 putative L-valine exp 24.2 2.9E+02 0.0063 20.4 5.4 33 202-234 71-103 (111)
15 COG4392 Predicted membrane pro 23.1 2.6E+02 0.0057 20.6 5.1 30 202-231 69-98 (107)
16 PRK09400 secE preprotein trans 21.6 2.4E+02 0.0052 18.4 4.2 38 75-123 20-57 (61)
17 TIGR02359 thiW thiW protein. L 20.6 4E+02 0.0086 21.1 6.1 29 202-230 72-100 (160)
No 1
>TIGR03008 pepcterm_CAAX CAAX prenyl protease-related protein. The CAAX prenyl protease, in eukaryotes, catalyzes three covalent modifications, including cleavage and acylation, at the C-terminus of certain proteins in a process connected to protein sorting. This family describes a bacterial protein family homologous to one domain of the CAAX-processing enzyme. Members of this protein family are found in genomes that carry a predicted protein sorting system, PEP-CTERM/exosortase, usually in the vicinity of the EpsH homolog that is the hallmark of the system. The function of this protein is unknown, but it may relate to protein motification.
Probab=99.82 E-value=2.1e-18 Score=143.35 Aligned_cols=86 Identities=19% Similarity=0.355 Sum_probs=73.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhh-c-------ChhHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhcCCch
Q 026106 152 VLVNCIIAPLLEEAVYRGFLLTSLAST-M-------SWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLI 223 (243)
Q Consensus 152 ~~~~~i~~pi~EEl~fRG~l~~~l~~~-~-------~~~~ailiss~lFal~H~~~~~~~~~~~~Gl~l~~~y~~t~~i~ 223 (243)
++..+++.|+.||++|||++++.+.++ + ..+.+.++||++||+.|. ..+..++.|++++++|.||||++
T Consensus 120 l~~~~l~vpi~EElfFRG~l~~~l~~~~f~~~~~~~~~~~a~lisSllFal~H~---~~~~~~l~Gli~~~l~~~tgsL~ 196 (222)
T TIGR03008 120 LAGATLVVPVMEELFWRSFLLRYLQQSDFESVPGGRFHWPSFLAVTLLFGLEHH---LIVAGLIAGLAYNLLLLRTGSIM 196 (222)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhCChH
Confidence 356688899999999999999999763 1 147899999999999997 35567788999999999999999
Q ss_pred HHHHHHHHHhHHHHHHH
Q 026106 224 SSIAIHSLYNASILMII 240 (243)
Q Consensus 224 ~~i~~H~~~N~~~~l~~ 240 (243)
.|+.+|+++|.......
T Consensus 197 ~~I~~H~~~N~ll~~~v 213 (222)
T TIGR03008 197 ACILAHAVTNGLLGLWV 213 (222)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999865543
No 2
>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases). The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane
Probab=99.80 E-value=5.5e-19 Score=127.47 Aligned_cols=86 Identities=34% Similarity=0.581 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 026106 149 TAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSI-DNFLQLFIIGCVLGSSYCWSGNLISSIA 227 (243)
Q Consensus 149 ~~~~~~~~i~~pi~EEl~fRG~l~~~l~~~~~~~~ailiss~lFal~H~~~-~~~~~~~~~Gl~l~~~y~~t~~i~~~i~ 227 (243)
+...+...+.+|+.||++|||++++.++++.+.+.++++|+++|++.|.+. ...+..+..|+.+++.|.||||++.++.
T Consensus 4 ~~~~~~~~~~~~~~EEl~fRg~l~~~l~~~~~~~~a~~is~~~f~~~H~~~~~~~~~~~~~g~~~~~~~~~t~sl~~~i~ 83 (91)
T PF02517_consen 4 LIFFLVMILIAPIAEELFFRGFLFNRLRRRFNPWFAILISSLLFALWHLPNGPQFIYAFLFGLLFGYLYLRTGSLWAAII 83 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 445678899999999999999999999999888999999999999999986 3478889999999999999999999999
Q ss_pred HHHHHhH
Q 026106 228 IHSLYNA 234 (243)
Q Consensus 228 ~H~~~N~ 234 (243)
+|..+|.
T Consensus 84 ~H~~~n~ 90 (91)
T PF02517_consen 84 AHALWNL 90 (91)
T ss_pred HHHHHHc
Confidence 9999996
No 3
>COG1266 Predicted metal-dependent membrane protease [General function prediction only]
Probab=99.75 E-value=9.8e-16 Score=127.40 Aligned_cols=88 Identities=39% Similarity=0.558 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHhhhch----hHHHHHHHHHHHHHHHHHhcCCc
Q 026106 147 SATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSI----DNFLQLFIIGCVLGSSYCWSGNL 222 (243)
Q Consensus 147 ~~~~~~~~~~i~~pi~EEl~fRG~l~~~l~~~~~~~~ailiss~lFal~H~~~----~~~~~~~~~Gl~l~~~y~~t~~i 222 (243)
......+...+.+|+.||++|||++++.+.++++.+.|+++||++||+.|.+. ..+..++..|+++++.|.||||+
T Consensus 121 ~~~~~~~~~~i~~~l~EEl~fRg~l~~~l~~~~~~~~a~iissllFal~H~~~~~~~~~~~~~~~~gli~~~~~~~t~~l 200 (226)
T COG1266 121 WLLLFFLVLLILAPLAEELLFRGYLLGALARRFGPLLAIIISSLLFALLHLPNGLLLLYFLLYFIAGLILGLLYLRTGSL 200 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 44566788999999999999999999999999999999999999999999974 56788889999999999999999
Q ss_pred hHHHHHHHHHhH
Q 026106 223 ISSIAIHSLYNA 234 (243)
Q Consensus 223 ~~~i~~H~~~N~ 234 (243)
+.++..|+.+|.
T Consensus 201 ~~~i~~H~~~N~ 212 (226)
T COG1266 201 WVPILLHALINL 212 (226)
T ss_pred HHHHHHHHHHHH
Confidence 999999999995
No 4
>KOG4130 consensus Prenyl protein protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.2e-08 Score=84.18 Aligned_cols=85 Identities=29% Similarity=0.342 Sum_probs=73.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHhhhch--------------------hHHHHHHHHHH
Q 026106 152 VLVNCIIAPLLEEAVYRGFLLTSLAST-MSWRNAVVISSAIFSVAHFSI--------------------DNFLQLFIIGC 210 (243)
Q Consensus 152 ~~~~~i~~pi~EEl~fRG~l~~~l~~~-~~~~~ailiss~lFal~H~~~--------------------~~~~~~~~~Gl 210 (243)
.+-..++||+.||++||.-+.+...+- ++...++..+.++||.+|..- .|+..+.+.|-
T Consensus 131 ~~RN~iiaPLtEElvfracmlp~~l~~~~s~l~avF~~PLfFGvAH~HHiyEqL~~g~~~~~~ilL~t~fQfsYTtlFG~ 210 (291)
T KOG4130|consen 131 WFRNFIIAPLTEELVFRACMLPTYLNLIQSSLQAVFWQPLFFGVAHAHHIYEQLQEGSMTTVSILLTTCFQFSYTTLFGG 210 (291)
T ss_pred HHHhhhhccchHHHHHHHHHHHHHHHhhhcchhhHHHhhHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999998875 788889999999999999952 13556668888
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhHHH
Q 026106 211 VLGSSYCWSGNLISSIAIHSLYNASI 236 (243)
Q Consensus 211 ~l~~~y~~t~~i~~~i~~H~~~N~~~ 236 (243)
--+.++.|||++|.|+..|+.+|...
T Consensus 211 yTaflF~rTghl~~~iLvHAfCN~MG 236 (291)
T KOG4130|consen 211 YTAFLFVRTGHLWCPILVHAFCNIMG 236 (291)
T ss_pred HHHHHhhhcCCchHHHHHHHHHhhcC
Confidence 88889999999999999999999753
No 5
>COG4449 Predicted protease of the Abi (CAAX) family [General function prediction only]
Probab=97.06 E-value=0.00033 Score=63.77 Aligned_cols=80 Identities=21% Similarity=0.167 Sum_probs=58.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhcChhHHHHHHH--HHHHHhhhch---------------hHHHHHHHHHHHHHHH
Q 026106 153 LVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISS--AIFSVAHFSI---------------DNFLQLFIIGCVLGSS 215 (243)
Q Consensus 153 ~~~~i~~pi~EEl~fRG~l~~~l~~~~~~~~ailiss--~lFal~H~~~---------------~~~~~~~~~Gl~l~~~ 215 (243)
+-..++..+.||++||-.+.+.=.+...+|..+-... ++|-++|--. ..+....+.|+..+..
T Consensus 713 L~vIl~PAl~EElvFRvvLlP~P~E~r~~W~tl~a~~~l~LfvLyHplnA~T~y~rg~PvFf~PiFL~ltglLGL~Ctvt 792 (827)
T COG4449 713 LTVILIPALGEELVFRVVLLPGPGEGRRPWVTLGAATGLVLFVLYHPLNALTFYPRGAPVFFRPIFLLLTGLLGLGCTVT 792 (827)
T ss_pred hhheehhhccccceeEEEecCCCCccccchHhHHHHHHHHHHHHhhhhhhhhccccCCcceeccHHHHHHHHHhhhhhhh
Confidence 4556677789999999999876655434444433333 4899999842 1234455889999999
Q ss_pred HHhcCCchHHHHHHHHH
Q 026106 216 YCWSGNLISSIAIHSLY 232 (243)
Q Consensus 216 y~~t~~i~~~i~~H~~~ 232 (243)
|..|+|+|+.+.+|..-
T Consensus 793 y~vT~SlW~iV~lHW~v 809 (827)
T COG4449 793 YRVTGSLWPIVLLHWAV 809 (827)
T ss_pred HHhccchHHHHHHHHHH
Confidence 99999999999999864
No 6
>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=95.53 E-value=1 Score=37.69 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHhhh
Q 026106 148 ATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHF 197 (243)
Q Consensus 148 ~~~~~~~~~i~~pi~EEl~fRG~l~~~l~~~~~~~~ailiss~lFal~H~ 197 (243)
.....+...+.+++.||. -|-..++.+.||.+.+.. .++.||+.|.
T Consensus 60 ~~l~~ly~~l~AGiFEE~-gR~i~~k~l~kk~~~~~~---~al~~GlGhG 105 (223)
T PF10086_consen 60 PILYALYGGLMAGIFEET-GRYIGFKYLLKKRRDWSD---DALAYGLGHG 105 (223)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcccchhh---HHHHHHcchH
Confidence 355678899999999995 355555555554433221 2444444444
No 7
>COG2339 prsW Membrane proteinase, regulator of anti-sigma factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.86 E-value=5.8 Score=34.30 Aligned_cols=30 Identities=13% Similarity=0.001 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026106 53 DLQTQALSLLLFQVLELSAALFLLSRTIKP 82 (243)
Q Consensus 53 ~~~~~~~~~l~~~~~~~i~~l~~l~~~~~~ 82 (243)
+...+..+.+..........+++.+++++.
T Consensus 35 ~~~~~~~~lv~~~~~~~~~~L~yFy~~~~~ 64 (274)
T COG2339 35 WNLPWMFALVLIAIAPALALLWYFYLRDAH 64 (274)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 345566667777777777777775555443
No 8
>PF13367 PrsW-protease: Protease prsW family
Probab=91.09 E-value=7.1 Score=31.53 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhcC---------CchHHHHHHHHHhHHHHH
Q 026106 203 LQLFIIGCVLGSSYCWSG---------NLISSIAIHSLYNASILM 238 (243)
Q Consensus 203 ~~~~~~Gl~l~~~y~~t~---------~i~~~i~~H~~~N~~~~l 238 (243)
....+.|..++....+++ -+..++..|.+||.....
T Consensus 130 ~~t~i~g~~l~~~~~~~~~~~~~~~~~~~~~a~~lH~~~N~~~~~ 174 (191)
T PF13367_consen 130 LFTAIFGYGLGLAKRRRKRGFRLALLLGFLLAVLLHGLWNFPLSL 174 (191)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334456655665553222 356789999999998765
No 9
>COG4377 Predicted membrane protein [Function unknown]
Probab=83.86 E-value=23 Score=29.24 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHhhhchhHHHH--HHHHHHHHHHHHHhcCCchH
Q 026106 149 TAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQ--LFIIGCVLGSSYCWSGNLIS 224 (243)
Q Consensus 149 ~~~~~~~~i~~pi~EEl~fRG~l~~~l~~~~~~~~ailiss~lFal~H~~~~~~~~--~~~~Gl~l~~~y~~t~~i~~ 224 (243)
....+..+..+++.||-- |-..++-+.||-..+. .++.||+.|......+. .....+..-..-..|+|.-.
T Consensus 77 l~y~IYG~lMAg~FEE~g-R~l~~rfl~kR~~~~A----d~lAyglGHgGlEail~g~~S~~~l~i~~~Avn~g~~~~ 149 (258)
T COG4377 77 LIYIIYGLLMAGFFEETG-RLLFFRFLEKRSLEKA----DALAYGLGHGGLEAILLGLTSLLNLYIVLSAVNTGNPQV 149 (258)
T ss_pred cHHHHHHHHHHHHHHHHh-HHHHHHHHHhCcccch----hHHHHhcccccHHHHHHHHHhHhhHHHhhhhhccCCHHH
Confidence 456788999999999974 6666677777655444 78889999987543221 12333344444455666554
No 10
>PHA02758 hypothetical protein; Provisional
Probab=48.49 E-value=49 Score=27.69 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=17.2
Q ss_pred HhcCCchHHHHHHHHHhHHH
Q 026106 217 CWSGNLISSIAIHSLYNASI 236 (243)
Q Consensus 217 ~~t~~i~~~i~~H~~~N~~~ 236 (243)
+|.+.+..+++-|..+|.-+
T Consensus 269 yke~giiasiighafynagv 288 (321)
T PHA02758 269 YKEGGIIASIIGHAFYNAGV 288 (321)
T ss_pred HhcCCchhhhhhHHHHHhHH
Confidence 56778999999999999754
No 11
>PTZ00359 hypothetical protein; Provisional
Probab=44.52 E-value=2.6e+02 Score=25.78 Aligned_cols=16 Identities=0% Similarity=-0.122 Sum_probs=10.3
Q ss_pred CCCCCcchHHHHHHHH
Q 026106 13 IPWESENVWSTMIFYM 28 (243)
Q Consensus 13 ~~w~~~~~~~~~~~~~ 28 (243)
+||++-++..+++.-.
T Consensus 249 ~pft~~D~vFL~L~G~ 264 (443)
T PTZ00359 249 MSFTKCDGVFIFLTGT 264 (443)
T ss_pred eeccchhhhHHHHhhh
Confidence 5788777766655444
No 12
>PF05437 AzlD: Branched-chain amino acid transport protein (AzlD); InterPro: IPR008407 This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD, a member of this group, has been shown by mutational analysis to be involved in branched-chain amino acid transport, and to be involved in conferring resistance to 4-azaleucine []. However, its exact role in these processes is not yet clear []. Based on its hydropathy profile, it has been suggested to be a membrane protein [].
Probab=33.67 E-value=1.6e+02 Score=20.73 Aligned_cols=28 Identities=18% Similarity=0.064 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 026106 203 LQLFIIGCVLGSSYCWSGNLISSIAIHS 230 (243)
Q Consensus 203 ~~~~~~Gl~l~~~y~~t~~i~~~i~~H~ 230 (243)
........+-..++.++||+..++..=.
T Consensus 65 ~~~l~a~~~~~~~~~~~~~~~~~v~~G~ 92 (99)
T PF05437_consen 65 NPYLIAALVAALVALRTRNLLLSVLAGV 92 (99)
T ss_pred hHHHHHHHHHHHHHHHHcchHHHHHHHH
Confidence 3344444555556667778887776543
No 13
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=33.24 E-value=3.3e+02 Score=25.67 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=50.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhcCh------hHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhcC
Q 026106 153 LVNCIIAPLLEEAVYRGFLLTSLASTMSW------RNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSG 220 (243)
Q Consensus 153 ~~~~i~~pi~EEl~fRG~l~~~l~~~~~~------~~ailiss~lFal~H~~~~~~~~~~~~Gl~l~~~y~~t~ 220 (243)
+.+.+.+++.--++|-|..-+...-..++ -....-.|.-++..|........+.+.|+.+++.++++|
T Consensus 81 ~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~y~k~ 154 (485)
T PF02028_consen 81 FAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFFYNKG 154 (485)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheeeeecC
Confidence 56677777888888888776655433322 122447889999999998888999999999999887743
No 14
>PRK10408 putative L-valine exporter; Provisional
Probab=24.25 E-value=2.9e+02 Score=20.37 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhH
Q 026106 202 FLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNA 234 (243)
Q Consensus 202 ~~~~~~~Gl~l~~~y~~t~~i~~~i~~H~~~N~ 234 (243)
.++..+.-.+++.+|.||||+..+...-++.=.
T Consensus 71 ~~ptlvGf~~l~~~fyktrsIi~aTL~gAl~YG 103 (111)
T PRK10408 71 LLPTLVGFLVLGACFYKTRSIIIATLLGALAYG 103 (111)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 455555556778888899988888776655433
No 15
>COG4392 Predicted membrane protein [Function unknown]
Probab=23.14 E-value=2.6e+02 Score=20.57 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 026106 202 FLQLFIIGCVLGSSYCWSGNLISSIAIHSL 231 (243)
Q Consensus 202 ~~~~~~~Gl~l~~~y~~t~~i~~~i~~H~~ 231 (243)
-.++.+.|++-...+..|||+...+.+-+.
T Consensus 69 ~~p~llA~lvav~la~lTrnll~~il~Gm~ 98 (107)
T COG4392 69 NNPYLLAGLVAVALAILTRNLLATILVGMA 98 (107)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888888888877766543
No 16
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=21.64 E-value=2.4e+02 Score=18.45 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=19.2
Q ss_pred HHHHhhcCCCcccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 026106 75 LLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVA 123 (243)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~ 123 (243)
.+++..||.++ +|. ......++|+++...+.++.-.+.
T Consensus 20 vl~~~~KPd~~--Ef~---------~ia~~~~iG~~i~G~iGf~Ikli~ 57 (61)
T PRK09400 20 VLKVARKPTRE--EFL---------LVAKVTGLGILLIGLIGFIIYLIM 57 (61)
T ss_pred HHHHhcCCCHH--HHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666555 332 233444466655555555444443
No 17
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=20.58 E-value=4e+02 Score=21.06 Aligned_cols=29 Identities=10% Similarity=-0.095 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 026106 202 FLQLFIIGCVLGSSYCWSGNLISSIAIHS 230 (243)
Q Consensus 202 ~~~~~~~Gl~l~~~y~~t~~i~~~i~~H~ 230 (243)
+......+++-|++|+|+|+.+.++....
T Consensus 72 fpg~~~~a~laGliyrk~~~~~~a~~ge~ 100 (160)
T TIGR02359 72 FPGGMPGALLAGLLYRFGRKHYWASLGEI 100 (160)
T ss_pred HHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 33444577778888888887765554443
Done!