Query 026106
Match_columns 243
No_of_seqs 227 out of 1962
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 05:45:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mp7_B Preprotein translocase 33.6 89 0.003 19.6 5.2 41 75-126 18-58 (61)
2 2jwa_A Receptor tyrosine-prote 25.1 1.1E+02 0.0037 17.9 4.3 9 73-81 32-40 (44)
3 1dc1_A Bsobi restriction endon 10.4 1.5E+02 0.005 24.5 2.4 13 161-173 110-122 (323)
4 1rh5_B Preprotein translocase 9.4 3.5E+02 0.012 17.5 3.6 36 75-121 22-57 (74)
5 2wwb_B SEC61gamma, protein tra 8.9 2.5E+02 0.0086 17.9 2.6 11 75-85 21-31 (68)
6 1wn4_A Vontr protein; helix, p 8.9 1.4E+02 0.0047 15.4 1.1 11 157-167 6-16 (28)
7 2ww9_B Protein transport prote 8.8 3.1E+02 0.011 18.1 3.1 17 102-118 51-67 (80)
8 4ev6_A Magnesium transport pro 7.6 3.7E+02 0.013 22.3 4.0 10 20-29 278-287 (339)
9 3arc_L Photosystem II reaction 7.2 3.5E+02 0.012 14.9 2.3 25 10-34 6-32 (37)
10 4b1v_M Phosphatase and actin r 5.5 75 0.0026 16.9 -1.0 9 163-171 19-27 (32)
No 1
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=33.55 E-value=89 Score=19.57 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=21.8
Q ss_pred HHHHhhcCCCcccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026106 75 LLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRL 126 (243)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~ 126 (243)
.+++..||.++ +|. ......++|+++...+.++...+...+
T Consensus 18 vlk~~~KPd~~--Ef~---------~iak~~~iG~~i~G~iGf~Ikli~~~l 58 (61)
T 3mp7_B 18 AFLVTKKPNWA--TYK---------RAAKITGLGIILIGLIGMLIRIVGILI 58 (61)
T ss_dssp HHHHSCCCCTT--HHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHH--HHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666555 332 333444566666666666555554444
No 2
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=25.12 E-value=1.1e+02 Score=17.87 Aligned_cols=9 Identities=22% Similarity=0.283 Sum_probs=4.0
Q ss_pred HHHHHHhhc
Q 026106 73 LFLLSRTIK 81 (243)
Q Consensus 73 l~~l~~~~~ 81 (243)
.+++||+..
T Consensus 32 ~~~~RRR~~ 40 (44)
T 2jwa_A 32 GILIKRRQQ 40 (44)
T ss_dssp HHHHHHHCS
T ss_pred Hhheehhhh
Confidence 344544433
No 3
>1dc1_A Bsobi restriction endonuclease; protein-DNA complex, thermophilic enzyme, degenerate DNA recognition, hydrolase/DNA complex; HET: DNA; 1.70A {Geobacillus stearothermophilus} SCOP: c.52.1.11
Probab=10.37 E-value=1.5e+02 Score=24.53 Aligned_cols=13 Identities=23% Similarity=0.687 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q 026106 161 LLEEAVYRGFLLT 173 (243)
Q Consensus 161 i~EEl~fRG~l~~ 173 (243)
+.||++||-.+.+
T Consensus 110 FVdELv~RfLLtr 122 (323)
T 1dc1_A 110 FIDELIFRYLLFQ 122 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 5899999988764
No 4
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=9.42 E-value=3.5e+02 Score=17.47 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=16.7
Q ss_pred HHHHhhcCCCcccccccccCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 026106 75 LLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASL 121 (243)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 121 (243)
.+++..||.++ +|. ......++|+++..++.++...
T Consensus 22 vlk~~~KPdr~--EF~---------~iak~~~iG~~imG~IGfiIkl 57 (74)
T 1rh5_B 22 VWLVLKKPTKD--EYL---------AVAKVTALGISLLGIIGYIIHV 57 (74)
T ss_dssp HHHSEECCCHH--HHH---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHH--HHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666544 332 2233444555555554444333
No 5
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=8.91 E-value=2.5e+02 Score=17.88 Aligned_cols=11 Identities=36% Similarity=0.658 Sum_probs=6.6
Q ss_pred HHHHhhcCCCc
Q 026106 75 LLSRTIKPEYD 85 (243)
Q Consensus 75 ~l~~~~~~~~~ 85 (243)
++++..||.++
T Consensus 21 ~lk~~~KPdr~ 31 (68)
T 2wwb_B 21 LVKRCTKPDRK 31 (68)
T ss_dssp HHHHCCCCCTH
T ss_pred HHHHhcCCCHH
Confidence 45666666655
No 6
>1wn4_A Vontr protein; helix, plant protein; NMR {Synthetic} SCOP: j.113.1.1
Probab=8.90 E-value=1.4e+02 Score=15.42 Aligned_cols=11 Identities=45% Similarity=0.371 Sum_probs=7.5
Q ss_pred HHhhHHHHHHH
Q 026106 157 IIAPLLEEAVY 167 (243)
Q Consensus 157 i~~pi~EEl~f 167 (243)
+.+|+.||-+.
T Consensus 6 ~sNplLEEALv 16 (28)
T 1wn4_A 6 KPNHLLEEALV 16 (28)
T ss_dssp STTHHHHHHHH
T ss_pred cccHHHHHHHH
Confidence 34688898653
No 7
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=8.76 E-value=3.1e+02 Score=18.08 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026106 102 LLASALGFAVLTSLVFL 118 (243)
Q Consensus 102 ~~~~~~g~~~~~~~~~~ 118 (243)
....++|+++..++.++
T Consensus 51 ak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 51 VKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555544443
No 8
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=7.57 E-value=3.7e+02 Score=22.34 Aligned_cols=10 Identities=0% Similarity=0.052 Sum_probs=5.0
Q ss_pred hHHHHHHHHH
Q 026106 20 VWSTMIFYMF 29 (243)
Q Consensus 20 ~~~~~~~~~~ 29 (243)
..+++..+..
T Consensus 278 ~mk~LTiit~ 287 (339)
T 4ev6_A 278 IMKILTMVTT 287 (339)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555544
No 9
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=7.18 E-value=3.5e+02 Score=14.88 Aligned_cols=25 Identities=4% Similarity=0.179 Sum_probs=0.0
Q ss_pred c-cCCCCCCcc-hHHHHHHHHHHHHHh
Q 026106 10 A-SDIPWESEN-VWSTMIFYMFNLHIP 34 (243)
Q Consensus 10 ~-~~~~w~~~~-~~~~~~~~~~~~~i~ 34 (243)
+ .+|.-|+.. ||..++.+.....++
T Consensus 6 n~q~VELNRTSLy~GLLlifvlavlFs 32 (37)
T 3arc_L 6 NRQPVELNRTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp TCCCBCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceechhhHHHHHHHHHHHHHHhh
No 10
>4b1v_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP LAB; 1.75A {Mus musculus}
Probab=5.53 E-value=75 Score=16.86 Aligned_cols=9 Identities=56% Similarity=0.829 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q 026106 163 EEAVYRGFL 171 (243)
Q Consensus 163 EEl~fRG~l 171 (243)
||++=||.+
T Consensus 19 eelikrgvl 27 (32)
T 4b1v_M 19 EELIKRGVL 27 (32)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHhhhh
Done!