Query 026106
Match_columns 243
No_of_seqs 227 out of 1962
Neff 8.3
Searched_HMMs 13730
Date Mon Mar 25 05:45:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026106.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026106hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ppjc2 f.21.1.2 (C:15-260) Mi 18.0 1.8E+02 0.013 21.5 7.8 26 9-34 115-140 (246)
2 d1dc1a_ c.52.1.11 (A:) Restric 12.5 54 0.0039 25.1 2.4 13 161-173 106-118 (319)
3 d1ppjd2 f.23.11.1 (D:196-241) 10.4 69 0.005 17.4 1.8 22 205-226 14-35 (46)
4 d1rh5b_ f.23.28.1 (B:) Preprot 9.6 1.7E+02 0.012 16.5 3.6 21 102-122 27-47 (56)
5 d2incb1 a.25.1.2 (B:8-329) Tol 8.7 3.7E+02 0.027 20.5 6.5 47 138-186 200-246 (322)
6 d1mtyb_ a.25.1.2 (B:) Methane 7.1 2.2E+02 0.016 22.6 4.5 27 151-177 240-266 (384)
7 d3cx5c2 f.21.1.2 (C:1-261) Mit 6.7 4.6E+02 0.033 19.3 8.2 24 11-34 132-155 (261)
8 d2axtl1 f.23.31.1 (L:1-37) Pho 5.0 2.4E+02 0.017 14.1 2.6 19 11-29 8-27 (37)
9 d1mhyb_ a.25.1.2 (B:) Methane 5.0 4.8E+02 0.035 20.4 5.3 31 144-175 232-262 (383)
10 d3cx5i1 f.23.14.1 (I:4-58) Sub 4.9 3.1E+02 0.022 15.2 2.9 22 171-192 3-24 (55)
No 1
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.00 E-value=1.8e+02 Score=21.48 Aligned_cols=26 Identities=19% Similarity=0.562 Sum_probs=15.4
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHh
Q 026106 9 LASDIPWESENVWSTMIFYMFNLHIP 34 (243)
Q Consensus 9 ~~~~~~w~~~~~~~~~~~~~~~~~i~ 34 (243)
.|..-||+++-+|..-+.-=+.-.+|
T Consensus 115 ~GY~Lpw~qms~wa~~V~t~l~~~iP 140 (246)
T d1ppjc2 115 MGYVLPWGQMSFWGATVITNLLSAIP 140 (246)
T ss_dssp HHHHTTCBHHHHHHHHHHHGGGGGST
T ss_pred eeccCCCcchhHHHHHHHHHHHHHHH
Confidence 34556888888877665443333444
No 2
>d1dc1a_ c.52.1.11 (A:) Restriction endonuclease BsobI {Bacillus stearothermophilus [TaxId: 1422]}
Probab=12.46 E-value=54 Score=25.13 Aligned_cols=13 Identities=23% Similarity=0.687 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q 026106 161 LLEEAVYRGFLLT 173 (243)
Q Consensus 161 i~EEl~fRG~l~~ 173 (243)
+.||++||-.+.+
T Consensus 106 fieElv~RfLLtr 118 (319)
T d1dc1a_ 106 FIDELIFRYLLFQ 118 (319)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 5899999988764
No 3
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.42 E-value=69 Score=17.44 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhcCCchHHH
Q 026106 205 LFIIGCVLGSSYCWSGNLISSI 226 (243)
Q Consensus 205 ~~~~Gl~l~~~y~~t~~i~~~i 226 (243)
.++.+++.+..|...+.+|.++
T Consensus 14 ~~~l~~l~~l~yy~KR~~Ws~l 35 (46)
T d1ppjd2 14 LLMMGLLLPLVYAMKRHKWSVL 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhc
Confidence 3455566666666666666653
No 4
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.62 E-value=1.7e+02 Score=16.54 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026106 102 LLASALGFAVLTSLVFLASLV 122 (243)
Q Consensus 102 ~~~~~~g~~~~~~~~~~~~~l 122 (243)
....++|+.+...+.++...+
T Consensus 27 a~v~~iG~~i~G~IGf~I~li 47 (56)
T d1rh5b_ 27 AKVTALGISLLGIIGYIIHVP 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555544444333
No 5
>d2incb1 a.25.1.2 (B:8-329) Toluene, o-xylene monooxygenase oxygenase subunit TouE {Pseudomonas stutzeri [TaxId: 316]}
Probab=8.68 E-value=3.7e+02 Score=20.45 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=27.4
Q ss_pred HHHhhcCChHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcChhHHHH
Q 026106 138 REILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVV 186 (243)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~i~~pi~EEl~fRG~l~~~l~~~~~~~~ail 186 (243)
++.+...++...++ ....++-|++.|++++++ .+.....-....+.+
T Consensus 200 E~~l~~~Dw~E~~v-A~nlv~e~l~~~l~~~~l-~~~A~~nGD~~t~~l 246 (322)
T d2incb1 200 EKALIAWDWGEAFT-AINLVTKPAVEEALLQQL-GSLAQSEGDTLLGLL 246 (322)
T ss_dssp HHHTTCCSHHHHHH-HHHTTHHHHHHHHHTHHH-HHHHHHTTCHHHHHH
T ss_pred HHHhhcccHHHHHH-HHHHHHHHhhhHHHHHHH-HHHHHHcCCchhHHH
Confidence 34444444444433 667788899999999996 444433333333333
No 6
>d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylococcus capsulatus [TaxId: 414]}
Probab=7.14 E-value=2.2e+02 Score=22.59 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=21.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 026106 151 IVLVNCIIAPLLEEAVYRGFLLTSLAS 177 (243)
Q Consensus 151 ~~~~~~i~~pi~EEl~fRG~l~~~l~~ 177 (243)
++....++-|+++|+++|+++.+.-..
T Consensus 240 ~vA~Nlv~dpll~~L~~~~f~~~~Aa~ 266 (384)
T d1mtyb_ 240 AFSVHAVYDALFGQFVRREFFQRLAPR 266 (384)
T ss_dssp HHHHHHTHHHHHHHHHHHTTHHHHGGG
T ss_pred HHHHHhhHHhhhHHHHHHHHHHHHHHH
Confidence 346788889999999999998755433
No 7
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.65 E-value=4.6e+02 Score=19.26 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=13.0
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHh
Q 026106 11 SDIPWESENVWSTMIFYMFNLHIP 34 (243)
Q Consensus 11 ~~~~w~~~~~~~~~~~~~~~~~i~ 34 (243)
..-||+++.+|..-+.-=+.-.+|
T Consensus 132 Y~Lpw~q~s~w~~~Vit~l~~~iP 155 (261)
T d3cx5c2 132 YCCVYGQMSHWGATVITNLFSAIP 155 (261)
T ss_dssp HHHHCBHHHHHHHHHHHHGGGGST
T ss_pred hhcCCCcchhhHHHHHHHHHHhcC
Confidence 345777777776555433333444
No 8
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.00 E-value=2.4e+02 Score=14.12 Aligned_cols=19 Identities=0% Similarity=0.184 Sum_probs=10.9
Q ss_pred cCCCCCCcc-hHHHHHHHHH
Q 026106 11 SDIPWESEN-VWSTMIFYMF 29 (243)
Q Consensus 11 ~~~~w~~~~-~~~~~~~~~~ 29 (243)
.+|.-|+.. ||..++.+.+
T Consensus 8 q~veLNrtsLy~GlLlifvl 27 (37)
T d2axtl1 8 QPVELNRTSLYLGLLLILVL 27 (37)
T ss_dssp CCBCCCHHHHHHHHHHHHHH
T ss_pred CccccchhhHHHHHHHHHHH
Confidence 456666555 5666655554
No 9
>d1mhyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylosinus trichosporium [TaxId: 426]}
Probab=4.98 E-value=4.8e+02 Score=20.42 Aligned_cols=31 Identities=10% Similarity=0.095 Sum_probs=22.3
Q ss_pred CChHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 026106 144 SDISATAIVLVNCIIAPLLEEAVYRGFLLTSL 175 (243)
Q Consensus 144 ~~~~~~~~~~~~~i~~pi~EEl~fRG~l~~~l 175 (243)
.++... ++.....+-|++.|++||++..+.-
T Consensus 232 ~Dw~E~-~vA~NlV~e~ll~~L~~~~f~~~~A 262 (383)
T d1mhyb_ 232 QDWNEI-LWAGHAVYDATFGQFARREFFQRLA 262 (383)
T ss_dssp CCHHHH-HHHHHHTHHHHHHHHHHTTTHHHHH
T ss_pred ccHHHH-HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344433 3367888999999999999876543
No 10
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.87 E-value=3.1e+02 Score=15.23 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=13.0
Q ss_pred HHHHHHhhcChhHHHHHHHHHH
Q 026106 171 LLTSLASTMSWRNAVVISSAIF 192 (243)
Q Consensus 171 l~~~l~~~~~~~~ailiss~lF 192 (243)
+++.+.||.+...+.++.+.++
T Consensus 3 iY~~lfrRnSv~~~tI~~gAf~ 24 (55)
T d3cx5i1 3 LYKTFFKRNAVFVGTIFAGAFV 24 (55)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 5667777777655555444433
Done!