Query 026107
Match_columns 243
No_of_seqs 215 out of 737
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 03:51:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5066 SCS2 VAMP-associated p 100.0 6.6E-31 1.4E-35 220.8 11.2 119 8-128 3-122 (242)
2 KOG0439 VAMP-associated protei 100.0 3.2E-28 6.9E-33 209.9 16.0 134 1-136 2-138 (218)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 2.3E-23 4.9E-28 160.3 12.2 104 8-112 2-107 (109)
4 PF14874 PapD-like: Flagellar- 98.6 8.8E-07 1.9E-11 67.2 11.4 70 6-75 2-74 (102)
5 PF00345 PapD_N: Pili and flag 97.0 0.01 2.3E-07 46.2 10.3 109 8-129 2-119 (122)
6 PRK10884 SH3 domain-containing 96.0 0.014 3E-07 50.4 5.3 68 174-241 122-192 (206)
7 PRK09918 putative fimbrial cha 94.1 0.73 1.6E-05 40.3 10.8 84 7-97 25-113 (230)
8 PRK09926 putative chaperone pr 93.4 0.91 2E-05 40.1 10.3 87 6-97 25-121 (246)
9 PRK15249 fimbrial chaperone pr 93.3 1.1 2.4E-05 39.8 10.6 72 7-81 29-111 (253)
10 PF07610 DUF1573: Protein of u 92.9 0.68 1.5E-05 29.9 6.5 43 29-72 2-45 (45)
11 PF14646 MYCBPAP: MYCBP-associ 92.3 0.81 1.7E-05 43.5 8.9 63 14-76 238-313 (426)
12 PRK11385 putativi pili assembl 92.0 1.8 3.9E-05 38.1 10.1 87 6-97 26-124 (236)
13 PRK15295 fimbrial assembly cha 91.9 2.2 4.7E-05 37.3 10.5 85 7-97 20-111 (226)
14 PRK15246 fimbrial assembly cha 91.8 2.4 5.2E-05 37.2 10.6 86 7-97 11-106 (233)
15 PRK10132 hypothetical protein; 91.6 0.76 1.6E-05 35.7 6.4 24 219-242 83-106 (108)
16 PRK15211 fimbrial chaperone pr 91.5 2.6 5.7E-05 36.9 10.5 85 7-97 23-113 (229)
17 PRK15299 fimbrial chaperone pr 91.3 2.7 5.8E-05 36.7 10.4 86 6-97 22-115 (227)
18 PF11614 FixG_C: IG-like fold 90.8 1.2 2.6E-05 34.4 7.0 51 25-75 33-85 (118)
19 PRK15192 fimbrial chaperone Bc 90.5 3.2 7E-05 36.5 10.1 83 7-97 23-119 (234)
20 PRK15290 lfpB fimbrial chapero 89.5 4.7 0.0001 35.6 10.4 86 7-97 38-131 (243)
21 PRK15208 long polar fimbrial c 89.1 4.9 0.00011 35.1 10.1 72 6-81 21-98 (228)
22 PF06005 DUF904: Protein of un 88.8 1.2 2.5E-05 32.1 5.0 34 174-207 8-41 (72)
23 PF05957 DUF883: Bacterial pro 88.4 1.9 4.2E-05 32.1 6.3 23 220-242 71-93 (94)
24 PRK15188 fimbrial chaperone pr 87.9 7.5 0.00016 34.0 10.5 86 6-97 27-118 (228)
25 PF02183 HALZ: Homeobox associ 87.1 2.6 5.6E-05 27.5 5.4 39 175-213 3-41 (45)
26 PF04420 CHD5: CHD5-like prote 86.9 0.78 1.7E-05 37.9 3.6 40 178-217 41-92 (161)
27 PF06156 DUF972: Protein of un 86.9 1.1 2.4E-05 34.7 4.2 34 177-210 22-55 (107)
28 PRK15195 fimbrial chaperone pr 86.8 9 0.0002 33.5 10.4 71 7-81 26-102 (229)
29 COG3121 FimC P pilus assembly 86.0 14 0.00031 32.3 11.3 85 7-97 28-119 (235)
30 COG3074 Uncharacterized protei 85.7 0.87 1.9E-05 32.5 2.8 35 172-206 27-61 (79)
31 PRK15254 fimbrial chaperone pr 85.0 13 0.00029 32.7 10.7 86 7-97 17-110 (239)
32 PRK10404 hypothetical protein; 84.7 4.9 0.00011 30.7 6.8 24 219-242 77-100 (101)
33 PRK15218 fimbrial chaperone pr 84.6 14 0.00031 32.2 10.5 84 8-97 20-113 (226)
34 PF02344 Myc-LZ: Myc leucine z 84.2 3.9 8.5E-05 24.6 4.7 27 186-212 3-29 (32)
35 PRK15422 septal ring assembly 83.8 1.8 3.8E-05 31.7 3.7 35 173-207 28-62 (79)
36 PF06280 DUF1034: Fn3-like dom 83.7 3.6 7.7E-05 31.4 5.8 53 23-75 8-81 (112)
37 TIGR02449 conserved hypothetic 83.2 2.9 6.4E-05 29.5 4.6 38 174-211 4-41 (65)
38 COG4575 ElaB Uncharacterized c 82.6 9.3 0.0002 29.4 7.4 24 219-242 80-103 (104)
39 PF10779 XhlA: Haemolysin XhlA 82.3 6.2 0.00014 27.9 6.1 18 224-241 54-71 (71)
40 PRK00888 ftsB cell division pr 82.1 3.6 7.8E-05 31.6 5.2 31 175-205 32-62 (105)
41 PRK13169 DNA replication intia 81.8 2.5 5.4E-05 32.9 4.2 36 175-210 20-55 (110)
42 PRK15224 pili assembly chapero 80.6 21 0.00046 31.4 10.2 82 8-97 30-118 (237)
43 TIGR03079 CH4_NH3mon_ox_B meth 80.0 4.7 0.0001 37.7 6.0 54 22-75 281-355 (399)
44 KOG4343 bZIP transcription fac 79.7 6.1 0.00013 38.7 6.8 32 181-212 306-337 (655)
45 PRK15233 putative fimbrial cha 79.7 27 0.00059 31.0 10.5 81 9-97 43-130 (246)
46 PF06156 DUF972: Protein of un 79.1 4.8 0.0001 31.2 4.9 43 172-214 10-52 (107)
47 PF04744 Monooxygenase_B: Mono 79.0 10 0.00022 35.5 7.9 65 8-74 249-335 (381)
48 smart00809 Alpha_adaptinC2 Ada 78.7 15 0.00033 27.1 7.7 53 22-74 17-73 (104)
49 PRK13169 DNA replication intia 78.6 4.9 0.00011 31.3 4.9 43 173-215 11-53 (110)
50 PF11120 DUF2636: Protein of u 78.1 2.2 4.7E-05 29.8 2.5 20 223-242 7-26 (62)
51 PRK15274 putative periplasmic 78.0 31 0.00068 30.7 10.5 85 8-97 28-120 (257)
52 PF05377 FlaC_arch: Flagella a 77.5 9.5 0.00021 26.0 5.4 30 180-209 3-32 (55)
53 PF04977 DivIC: Septum formati 77.4 6.5 0.00014 27.7 5.0 28 176-203 23-50 (80)
54 PF10633 NPCBM_assoc: NPCBM-as 77.4 5 0.00011 28.5 4.4 54 23-76 5-62 (78)
55 PF13807 GNVR: G-rich domain o 76.2 26 0.00057 25.2 8.1 18 223-240 59-76 (82)
56 PRK15253 putative fimbrial ass 75.7 57 0.0012 28.8 11.7 84 8-97 35-128 (242)
57 PRK15422 septal ring assembly 75.3 6.9 0.00015 28.6 4.5 37 173-209 7-43 (79)
58 PF06005 DUF904: Protein of un 75.0 9.1 0.0002 27.5 5.1 35 174-208 22-56 (72)
59 PF05506 DUF756: Domain of unk 74.8 12 0.00027 27.3 6.0 40 26-72 21-65 (89)
60 PRK10884 SH3 domain-containing 74.3 5 0.00011 34.6 4.3 60 178-240 133-195 (206)
61 smart00338 BRLZ basic region l 74.2 11 0.00023 26.0 5.2 35 178-212 27-61 (65)
62 PF15188 CCDC-167: Coiled-coil 73.9 10 0.00022 28.2 5.3 42 190-236 42-83 (85)
63 COG3074 Uncharacterized protei 73.9 8.3 0.00018 27.6 4.5 35 174-208 8-42 (79)
64 PF02183 HALZ: Homeobox associ 73.8 4.9 0.00011 26.2 3.1 36 172-207 7-42 (45)
65 PRK15285 putative fimbrial cha 73.6 54 0.0012 29.1 10.8 85 8-97 27-119 (250)
66 PF00170 bZIP_1: bZIP transcri 72.0 14 0.0003 25.4 5.4 35 178-212 27-61 (64)
67 PF01166 TSC22: TSC-22/dip/bun 71.9 12 0.00026 25.8 4.8 28 176-203 13-40 (59)
68 COG4467 Regulator of replicati 71.4 6.8 0.00015 30.4 3.9 40 174-213 12-51 (114)
69 PF06072 Herpes_US9: Alphaherp 70.9 5.1 0.00011 27.7 2.8 18 224-241 40-57 (60)
70 TIGR03752 conj_TIGR03752 integ 69.2 12 0.00026 36.2 5.9 30 181-210 63-92 (472)
71 PRK00888 ftsB cell division pr 69.1 6.9 0.00015 30.1 3.6 35 178-212 28-62 (105)
72 PRK00523 hypothetical protein; 68.5 4.1 9E-05 29.3 2.1 22 221-242 6-27 (72)
73 PF00927 Transglut_C: Transglu 68.1 22 0.00048 26.7 6.3 55 21-75 13-77 (107)
74 KOG4196 bZIP transcription fac 68.0 10 0.00022 30.4 4.3 38 174-211 78-115 (135)
75 PRK01844 hypothetical protein; 67.6 4.2 9.1E-05 29.2 1.9 20 223-242 7-26 (72)
76 PF04977 DivIC: Septum formati 67.1 8.4 0.00018 27.1 3.5 34 178-211 18-51 (80)
77 smart00340 HALZ homeobox assoc 67.0 24 0.00053 22.7 5.1 25 189-213 10-34 (44)
78 KOG0860 Synaptobrevin/VAMP-lik 66.6 62 0.0013 25.5 8.5 17 225-241 99-115 (116)
79 PF11611 DUF4352: Domain of un 65.6 30 0.00064 26.1 6.6 54 21-74 34-101 (123)
80 PF09753 Use1: Membrane fusion 65.2 36 0.00078 29.9 7.9 37 206-243 214-250 (251)
81 TIGR03493 cellullose_BcsF cell 64.6 7.5 0.00016 27.1 2.6 20 223-242 7-26 (62)
82 TIGR02209 ftsL_broad cell divi 63.9 20 0.00043 25.7 5.1 26 178-203 32-57 (85)
83 PF07716 bZIP_2: Basic region 61.9 19 0.00041 23.9 4.3 27 185-211 26-52 (54)
84 PF02883 Alpha_adaptinC2: Adap 60.8 35 0.00076 25.7 6.2 53 22-74 23-79 (115)
85 smart00338 BRLZ basic region l 60.3 12 0.00026 25.8 3.2 30 183-212 25-54 (65)
86 PF02753 PapD_C: Pili assembly 59.8 8.9 0.00019 26.4 2.5 43 29-71 1-44 (68)
87 PF00553 CBM_2: Cellulose bind 59.6 24 0.00051 26.5 5.0 51 24-74 14-84 (101)
88 PRK14127 cell division protein 59.0 32 0.0007 26.7 5.6 35 179-213 32-66 (109)
89 PF07106 TBPIP: Tat binding pr 58.8 23 0.00051 29.0 5.2 20 175-194 84-103 (169)
90 PF11346 DUF3149: Protein of u 58.1 11 0.00023 24.3 2.4 20 224-243 18-37 (42)
91 PF07716 bZIP_2: Basic region 57.0 39 0.00084 22.4 5.2 29 178-206 26-54 (54)
92 PF12325 TMF_TATA_bd: TATA ele 57.0 27 0.00058 27.6 5.0 32 177-208 23-54 (120)
93 KOG3119 Basic region leucine z 56.7 24 0.00052 31.6 5.3 37 178-214 216-252 (269)
94 COG3763 Uncharacterized protei 56.7 12 0.00025 26.9 2.5 18 224-241 8-25 (71)
95 PF04728 LPP: Lipoprotein leuc 56.3 50 0.0011 22.6 5.5 25 182-206 15-39 (56)
96 PRK00736 hypothetical protein; 55.8 25 0.00053 24.8 4.2 40 173-212 8-47 (68)
97 PF04102 SlyX: SlyX; InterPro 54.9 28 0.00061 24.5 4.4 40 174-213 8-47 (69)
98 PF01166 TSC22: TSC-22/dip/bun 54.8 36 0.00078 23.5 4.6 33 184-216 14-46 (59)
99 PF14235 DUF4337: Domain of un 54.6 30 0.00064 28.5 5.1 26 180-205 69-94 (157)
100 PRK00295 hypothetical protein; 54.2 33 0.00071 24.2 4.6 39 174-212 9-47 (68)
101 PF00170 bZIP_1: bZIP transcri 53.7 17 0.00037 24.9 3.1 28 184-211 26-53 (64)
102 smart00637 CBD_II CBD_II domai 53.6 63 0.0014 23.5 6.3 48 25-72 8-75 (92)
103 PF10482 CtIP_N: Tumour-suppre 53.1 21 0.00045 28.0 3.7 31 177-207 89-119 (120)
104 PF06030 DUF916: Bacterial pro 52.9 1.1E+02 0.0024 23.9 8.8 26 19-44 23-48 (121)
105 PF07407 Seadorna_VP6: Seadorn 52.7 21 0.00045 33.1 4.1 12 117-128 6-17 (420)
106 PF03173 CHB_HEX: Putative car 52.6 17 0.00037 30.2 3.4 34 41-74 69-104 (164)
107 TIGR02449 conserved hypothetic 52.3 26 0.00056 24.7 3.7 36 173-208 17-52 (65)
108 PF05377 FlaC_arch: Flagella a 52.1 35 0.00075 23.3 4.2 35 173-207 3-37 (55)
109 PF12690 BsuPI: Intracellular 52.1 74 0.0016 23.1 6.4 21 25-45 2-22 (82)
110 PF10224 DUF2205: Predicted co 51.6 21 0.00044 26.3 3.3 38 173-210 26-63 (80)
111 KOG1962 B-cell receptor-associ 51.0 32 0.00069 30.0 4.9 38 175-212 149-186 (216)
112 PRK00523 hypothetical protein; 50.7 14 0.0003 26.6 2.2 22 221-242 2-23 (72)
113 TIGR02745 ccoG_rdxA_fixG cytoc 50.0 1E+02 0.0022 29.7 8.6 52 24-75 347-400 (434)
114 PRK04406 hypothetical protein; 49.8 41 0.00089 24.2 4.6 41 172-212 13-53 (75)
115 PF03302 VSP: Giardia variant- 49.6 9.8 0.00021 36.0 1.7 24 219-242 370-394 (397)
116 PRK04325 hypothetical protein; 49.4 42 0.00092 24.0 4.6 41 172-212 11-51 (74)
117 PF13473 Cupredoxin_1: Cupredo 49.1 83 0.0018 23.3 6.5 52 9-72 31-82 (104)
118 PF13600 DUF4140: N-terminal d 47.8 51 0.0011 24.6 5.2 31 178-208 71-101 (104)
119 PF04999 FtsL: Cell division p 47.6 51 0.0011 24.3 5.0 31 178-208 36-66 (97)
120 PF12958 DUF3847: Protein of u 47.6 58 0.0013 24.2 5.2 33 178-210 2-34 (86)
121 KOG4343 bZIP transcription fac 47.5 21 0.00045 35.2 3.5 31 184-214 302-332 (655)
122 PF12709 Kinetocho_Slk19: Cent 46.9 68 0.0015 23.9 5.4 31 182-212 47-77 (87)
123 PF05753 TRAP_beta: Translocon 46.9 1.1E+02 0.0025 25.7 7.6 52 22-74 37-97 (181)
124 PRK02119 hypothetical protein; 46.6 50 0.0011 23.6 4.6 40 173-212 12-51 (73)
125 PRK02793 phi X174 lysis protei 46.4 51 0.0011 23.5 4.6 40 173-212 11-50 (72)
126 PF14775 NYD-SP28_assoc: Sperm 46.1 52 0.0011 22.6 4.5 27 178-204 27-53 (60)
127 TIGR03752 conj_TIGR03752 integ 45.7 39 0.00084 32.8 5.0 26 178-203 67-92 (472)
128 COG5547 Small integral membran 45.4 23 0.0005 24.4 2.5 20 223-242 32-51 (62)
129 PRK09039 hypothetical protein; 45.3 28 0.0006 32.3 3.9 30 176-205 129-158 (343)
130 PF07334 IFP_35_N: Interferon- 44.6 51 0.0011 24.0 4.3 24 188-211 4-27 (76)
131 PF14257 DUF4349: Domain of un 44.6 1.3E+02 0.0028 26.4 7.9 27 186-212 164-190 (262)
132 PF04728 LPP: Lipoprotein leuc 44.2 50 0.0011 22.6 4.0 31 178-208 4-34 (56)
133 PRK13922 rod shape-determining 43.9 55 0.0012 28.9 5.6 32 181-212 73-107 (276)
134 KOG0977 Nuclear envelope prote 43.8 39 0.00084 33.4 4.8 43 172-214 150-192 (546)
135 PF06612 DUF1146: Protein of u 43.3 29 0.00062 22.9 2.7 22 221-242 24-45 (48)
136 PF08172 CASP_C: CASP C termin 43.0 23 0.0005 31.4 2.9 33 172-204 95-127 (248)
137 PF12777 MT: Microtubule-bindi 42.9 27 0.00057 32.3 3.4 34 175-208 240-273 (344)
138 PF05529 Bap31: B-cell recepto 42.7 55 0.0012 27.4 5.1 28 181-208 158-185 (192)
139 KOG4005 Transcription factor X 41.8 51 0.0011 29.3 4.7 28 176-203 89-116 (292)
140 PF11772 EpuA: DNA-directed RN 41.8 17 0.00036 24.0 1.4 17 225-241 3-19 (47)
141 PRK00846 hypothetical protein; 41.7 54 0.0012 23.9 4.2 39 173-211 16-54 (77)
142 TIGR03142 cytochro_ccmI cytoch 41.7 95 0.0021 23.9 5.9 17 223-239 95-111 (117)
143 KOG4196 bZIP transcription fac 41.6 88 0.0019 25.1 5.6 26 187-212 77-102 (135)
144 PF10205 KLRAQ: Predicted coil 41.6 54 0.0012 25.2 4.3 39 173-211 29-67 (102)
145 PF11180 DUF2968: Protein of u 41.5 97 0.0021 26.5 6.3 35 180-214 150-184 (192)
146 PF14197 Cep57_CLD_2: Centroso 41.4 77 0.0017 22.4 4.9 14 200-213 49-62 (69)
147 PF04201 TPD52: Tumour protein 41.1 80 0.0017 26.3 5.6 19 174-192 33-51 (162)
148 PRK13729 conjugal transfer pil 41.1 32 0.00069 33.4 3.7 40 174-213 80-119 (475)
149 PF14197 Cep57_CLD_2: Centroso 40.7 84 0.0018 22.2 5.0 19 193-211 49-67 (69)
150 PF10883 DUF2681: Protein of u 40.2 1E+02 0.0022 22.9 5.5 31 178-208 24-54 (87)
151 PF01763 Herpes_UL6: Herpesvir 40.0 55 0.0012 32.5 5.2 40 174-213 367-406 (557)
152 PRK13922 rod shape-determining 40.0 32 0.00069 30.5 3.4 37 172-208 71-110 (276)
153 PF12718 Tropomyosin_1: Tropom 40.0 47 0.001 26.8 4.0 40 173-212 17-56 (143)
154 PRK10803 tol-pal system protei 39.8 68 0.0015 28.5 5.4 29 175-203 59-87 (263)
155 PF01105 EMP24_GP25L: emp24/gp 39.2 7.1 0.00015 31.4 -0.9 24 219-242 157-180 (183)
156 KOG3156 Uncharacterized membra 39.2 89 0.0019 27.2 5.7 37 176-212 100-137 (220)
157 TIGR02894 DNA_bind_RsfA transc 39.2 89 0.0019 26.0 5.5 22 188-209 108-129 (161)
158 PF15168 TRIQK: Triple QxxK/R 39.1 78 0.0017 23.0 4.6 20 221-240 51-70 (79)
159 PF06645 SPC12: Microsomal sig 38.2 32 0.00069 24.8 2.5 19 223-241 14-32 (76)
160 PF13815 Dzip-like_N: Iguana/D 38.2 48 0.001 25.7 3.8 34 179-212 82-115 (118)
161 PF06305 DUF1049: Protein of u 38.2 38 0.00082 23.1 2.9 22 189-210 46-67 (68)
162 TIGR00219 mreC rod shape-deter 37.8 37 0.0008 30.6 3.5 32 175-206 71-106 (283)
163 PRK02898 cobalt transport prot 37.8 18 0.00039 27.7 1.2 21 221-241 67-87 (100)
164 PF07798 DUF1640: Protein of u 37.7 71 0.0015 26.5 4.9 16 225-240 159-174 (177)
165 TIGR02209 ftsL_broad cell divi 37.6 59 0.0013 23.2 3.9 34 177-210 24-57 (85)
166 COG4026 Uncharacterized protei 37.5 44 0.00095 29.5 3.6 9 63-71 32-40 (290)
167 PF13205 Big_5: Bacterial Ig-l 37.0 1.6E+02 0.0035 21.3 7.1 56 14-72 26-84 (107)
168 PF04111 APG6: Autophagy prote 36.8 70 0.0015 29.3 5.1 15 227-241 173-187 (314)
169 PF13815 Dzip-like_N: Iguana/D 36.5 87 0.0019 24.2 5.0 33 174-206 84-116 (118)
170 PF09738 DUF2051: Double stran 36.5 43 0.00093 30.7 3.6 37 172-208 86-122 (302)
171 PRK15308 putative fimbrial pro 36.4 3E+02 0.0065 24.2 11.6 84 6-97 16-117 (234)
172 PF08826 DMPK_coil: DMPK coile 36.3 1.2E+02 0.0027 20.9 5.1 16 196-211 44-59 (61)
173 PF11859 DUF3379: Protein of u 35.9 1.4E+02 0.0031 26.3 6.6 23 219-241 75-97 (232)
174 TIGR03592 yidC_oxa1_cterm memb 35.9 2E+02 0.0043 23.8 7.4 34 178-214 30-63 (181)
175 PRK09413 IS2 repressor TnpA; R 35.5 95 0.0021 24.0 5.1 30 180-209 74-103 (121)
176 KOG4797 Transcriptional regula 35.3 1.1E+02 0.0023 23.9 5.0 20 184-203 74-93 (123)
177 PF08078 PsaX: PsaX family; I 35.0 60 0.0013 20.1 2.9 20 224-243 18-37 (37)
178 PF04325 DUF465: Protein of un 35.0 1.3E+02 0.0027 19.5 4.8 35 178-212 7-48 (49)
179 PRK14750 kdpF potassium-transp 34.8 61 0.0013 19.1 2.8 19 223-241 3-21 (29)
180 TIGR02656 cyanin_plasto plasto 34.5 1.1E+02 0.0024 22.6 5.1 62 5-72 9-76 (99)
181 TIGR03784 marine_sortase sorta 34.5 2.1E+02 0.0045 23.8 7.3 59 27-91 113-173 (174)
182 COG4467 Regulator of replicati 34.0 76 0.0016 24.7 4.1 37 173-209 18-54 (114)
183 PF06716 DUF1201: Protein of u 34.0 29 0.00062 22.9 1.5 22 221-242 13-34 (54)
184 KOG4797 Transcriptional regula 33.8 1.2E+02 0.0026 23.7 5.1 29 185-213 68-96 (123)
185 PRK09413 IS2 repressor TnpA; R 33.6 87 0.0019 24.2 4.6 28 186-213 73-100 (121)
186 PF04111 APG6: Autophagy prote 33.5 96 0.0021 28.4 5.5 15 225-239 178-192 (314)
187 PF10883 DUF2681: Protein of u 33.5 1.1E+02 0.0024 22.8 4.8 22 178-199 31-52 (87)
188 PF12709 Kinetocho_Slk19: Cent 33.2 1.1E+02 0.0024 22.8 4.8 31 177-207 49-79 (87)
189 PF07705 CARDB: CARDB; InterP 32.8 1.6E+02 0.0034 20.8 5.7 54 22-75 18-72 (101)
190 PF04678 DUF607: Protein of un 32.7 1.1E+02 0.0024 25.5 5.4 12 228-239 128-139 (180)
191 PF03904 DUF334: Domain of unk 32.2 1E+02 0.0022 27.1 5.1 13 186-198 122-134 (230)
192 PF03980 Nnf1: Nnf1 ; InterPr 32.2 1.2E+02 0.0026 22.9 5.1 30 183-212 79-108 (109)
193 PRK03947 prefoldin subunit alp 31.7 1.1E+02 0.0024 24.1 5.0 39 174-212 98-136 (140)
194 COG2919 Septum formation initi 31.5 1.1E+02 0.0024 23.7 4.8 32 177-208 57-88 (117)
195 KOG1690 emp24/gp25L/p24 family 31.5 2.2E+02 0.0048 24.6 6.9 55 186-240 148-202 (215)
196 KOG3863 bZIP transcription fac 31.2 92 0.002 31.2 5.2 35 179-213 513-547 (604)
197 PF11544 Spc42p: Spindle pole 31.0 1.7E+02 0.0037 21.3 5.3 37 176-212 18-54 (76)
198 PHA02414 hypothetical protein 31.0 2.4E+02 0.0053 21.5 6.5 48 196-243 62-110 (111)
199 COG3121 FimC P pilus assembly 30.9 1.2E+02 0.0026 26.5 5.4 42 27-70 165-208 (235)
200 TIGR02894 DNA_bind_RsfA transc 30.7 1.2E+02 0.0026 25.2 5.0 28 178-205 112-139 (161)
201 PRK14143 heat shock protein Gr 30.6 1.3E+02 0.0028 26.5 5.6 33 179-211 69-101 (238)
202 KOG1666 V-SNARE [Intracellular 30.5 1.3E+02 0.0028 26.3 5.3 18 195-212 157-174 (220)
203 PF01102 Glycophorin_A: Glycop 30.4 48 0.001 26.2 2.6 20 223-242 71-90 (122)
204 COG4317 Uncharacterized protei 30.2 46 0.00099 24.7 2.2 16 225-240 30-45 (93)
205 PHA02657 hypothetical protein; 30.2 52 0.0011 24.5 2.5 19 223-241 31-49 (95)
206 PF09304 Cortex-I_coil: Cortex 30.1 1.4E+02 0.0031 23.1 5.0 34 175-208 35-68 (107)
207 COG2919 Septum formation initi 29.8 77 0.0017 24.6 3.6 36 177-212 50-85 (117)
208 cd00632 Prefoldin_beta Prefold 29.7 1.1E+02 0.0023 23.1 4.4 37 174-210 67-103 (105)
209 PF11932 DUF3450: Protein of u 29.4 96 0.0021 27.1 4.6 22 181-202 53-74 (251)
210 PF10498 IFT57: Intra-flagella 29.3 95 0.0021 29.1 4.8 47 175-224 285-331 (359)
211 PRK07857 hypothetical protein; 29.3 1.8E+02 0.004 22.4 5.6 33 179-211 30-62 (106)
212 PF14796 AP3B1_C: Clathrin-ada 29.2 2.1E+02 0.0046 23.3 6.2 58 15-72 73-138 (145)
213 KOG3156 Uncharacterized membra 29.1 1.4E+02 0.0029 26.1 5.3 18 223-240 200-217 (220)
214 PRK07075 isochorismate-pyruvat 29.1 2E+02 0.0044 21.6 5.8 33 173-205 11-43 (101)
215 PF08172 CASP_C: CASP C termin 29.0 96 0.0021 27.5 4.5 35 174-208 90-124 (248)
216 PF06483 ChiC: Chitinase C; I 28.9 64 0.0014 27.3 3.2 25 37-72 116-140 (180)
217 TIGR00219 mreC rod shape-deter 28.8 1.4E+02 0.0029 26.9 5.6 36 179-214 68-107 (283)
218 PRK13673 hypothetical protein; 28.2 1.1E+02 0.0023 24.2 4.2 34 206-240 78-111 (118)
219 COG2991 Uncharacterized protei 28.1 61 0.0013 23.4 2.5 16 227-242 11-26 (77)
220 KOG1769 Ubiquitin-like protein 28.1 74 0.0016 24.3 3.1 25 25-49 19-43 (99)
221 PF10473 CENP-F_leu_zip: Leuci 28.0 1.5E+02 0.0032 24.0 5.1 13 189-201 71-83 (140)
222 cd07429 Cby_like Chibby, a nuc 27.9 1.3E+02 0.0027 23.4 4.5 24 186-209 74-97 (108)
223 PF04899 MbeD_MobD: MbeD/MobD 27.9 89 0.0019 22.3 3.4 35 175-209 33-67 (70)
224 KOG3488 Dolichol phosphate-man 27.8 58 0.0012 23.4 2.3 22 221-242 52-74 (81)
225 PF14235 DUF4337: Domain of un 27.8 3.2E+02 0.0069 22.4 7.1 38 174-211 70-107 (157)
226 PF13600 DUF4140: N-terminal d 27.8 1.5E+02 0.0033 21.9 4.9 30 174-203 74-103 (104)
227 PRK02119 hypothetical protein; 27.6 1.7E+02 0.0037 20.8 4.9 35 177-211 23-57 (73)
228 COG5415 Predicted integral mem 27.5 2.8E+02 0.006 24.3 6.8 63 177-239 15-85 (251)
229 PF08961 DUF1875: Domain of un 27.5 20 0.00044 31.3 0.0 40 172-211 124-163 (243)
230 PRK14748 kdpF potassium-transp 27.3 1E+02 0.0022 18.2 2.9 17 224-240 4-20 (29)
231 PF09640 DUF2027: Domain of un 27.2 1.1E+02 0.0023 25.5 4.2 68 25-99 18-85 (162)
232 PF12325 TMF_TATA_bd: TATA ele 27.0 1.6E+02 0.0034 23.2 5.0 9 203-211 73-81 (120)
233 TIGR02327 int_mem_ywzB conserv 26.9 57 0.0012 23.1 2.2 23 220-242 30-52 (68)
234 COG1730 GIM5 Predicted prefold 26.7 1.6E+02 0.0034 24.1 5.0 39 174-212 98-136 (145)
235 KOG4005 Transcription factor X 26.5 98 0.0021 27.5 4.0 39 173-211 93-138 (292)
236 PF15035 Rootletin: Ciliary ro 26.3 1.8E+02 0.0038 24.6 5.5 31 178-208 75-105 (182)
237 PF05529 Bap31: B-cell recepto 26.3 76 0.0016 26.5 3.3 28 187-214 157-184 (192)
238 KOG0709 CREB/ATF family transc 26.2 1.1E+02 0.0023 29.7 4.5 29 177-205 286-314 (472)
239 PRK14160 heat shock protein Gr 26.2 1.3E+02 0.0028 26.1 4.7 37 176-212 60-96 (211)
240 PF08614 ATG16: Autophagy prot 26.2 1.6E+02 0.0035 24.6 5.3 31 174-204 106-136 (194)
241 TIGR01242 26Sp45 26S proteasom 26.1 1E+02 0.0022 28.3 4.4 36 177-212 6-41 (364)
242 PF11668 Gp_UL130: HCMV glycop 26.1 1.6E+02 0.0035 24.2 4.9 43 15-57 102-154 (156)
243 PF12768 Rax2: Cortical protei 26.0 59 0.0013 29.3 2.7 22 221-242 236-257 (281)
244 COG2433 Uncharacterized conser 26.0 1.3E+02 0.0029 30.2 5.2 18 58-75 211-228 (652)
245 PRK00295 hypothetical protein; 25.8 2.4E+02 0.0051 19.8 5.2 35 177-211 19-53 (68)
246 PF04102 SlyX: SlyX; InterPro 25.8 1.5E+02 0.0032 20.8 4.2 35 177-211 18-52 (69)
247 PF15058 Speriolin_N: Sperioli 25.6 98 0.0021 26.5 3.7 26 179-204 7-32 (200)
248 PF07106 TBPIP: Tat binding pr 25.5 1.4E+02 0.003 24.4 4.6 16 196-211 121-136 (169)
249 COG5336 Uncharacterized protei 25.4 71 0.0015 25.0 2.6 22 219-240 70-91 (116)
250 PF06376 DUF1070: Protein of u 25.4 81 0.0018 19.4 2.4 18 224-241 17-34 (34)
251 PTZ00454 26S protease regulato 25.4 99 0.0021 29.2 4.2 38 175-212 27-64 (398)
252 PF11906 DUF3426: Protein of u 25.2 1.5E+02 0.0033 23.4 4.7 52 23-74 68-136 (149)
253 PF09006 Surfac_D-trimer: Lung 25.0 2.1E+02 0.0045 18.8 4.8 25 188-212 3-27 (46)
254 PRK10722 hypothetical protein; 24.8 1.9E+02 0.0042 25.7 5.6 29 183-211 175-203 (247)
255 TIGR01165 cbiN cobalt transpor 24.8 19 0.00042 27.0 -0.5 23 220-242 66-88 (91)
256 TIGR02736 cbb3_Q_epsi cytochro 24.7 78 0.0017 21.6 2.4 17 225-241 5-21 (56)
257 PF07051 OCIA: Ovarian carcino 24.6 40 0.00087 26.3 1.2 16 224-239 76-91 (111)
258 PF02996 Prefoldin: Prefoldin 24.6 1.3E+02 0.0029 22.6 4.2 34 176-209 83-116 (120)
259 PF04639 Baculo_E56: Baculovir 24.6 49 0.0011 30.1 1.9 25 219-243 276-300 (305)
260 COG4026 Uncharacterized protei 24.4 1.1E+02 0.0023 27.1 3.8 16 174-189 139-154 (290)
261 PRK05771 V-type ATP synthase s 24.4 1.1E+02 0.0023 30.7 4.5 36 177-212 93-128 (646)
262 PF05308 Mito_fiss_reg: Mitoch 24.4 1.1E+02 0.0023 27.3 4.0 24 180-203 118-141 (253)
263 TIGR01801 CM_A chorismate muta 24.4 2.8E+02 0.0061 21.0 5.8 29 175-203 9-37 (102)
264 KOG3620 Uncharacterized conser 24.3 1.9E+02 0.0041 31.7 6.2 79 6-90 525-609 (1626)
265 PRK00720 tatA twin arginine tr 24.1 83 0.0018 23.0 2.6 17 220-236 3-19 (78)
266 PRK02793 phi X174 lysis protei 24.0 2.2E+02 0.0049 20.1 4.9 34 178-211 23-56 (72)
267 PF01025 GrpE: GrpE; InterPro 23.9 2.9E+02 0.0063 22.1 6.3 33 172-204 13-45 (165)
268 PF10224 DUF2205: Predicted co 23.8 1.6E+02 0.0035 21.6 4.1 34 179-212 25-58 (80)
269 PF14645 Chibby: Chibby family 23.8 1.6E+02 0.0035 23.0 4.5 20 187-206 74-93 (116)
270 PRK14127 cell division protein 23.5 2.7E+02 0.006 21.5 5.6 37 175-211 35-71 (109)
271 PRK11876 petM cytochrome b6-f 23.5 1.1E+02 0.0024 18.5 2.6 19 225-243 11-29 (32)
272 PTZ00382 Variant-specific surf 23.5 44 0.00094 25.2 1.2 24 219-242 69-93 (96)
273 PF04201 TPD52: Tumour protein 23.4 95 0.0021 25.8 3.2 24 177-200 29-52 (162)
274 cd04766 HTH_HspR Helix-Turn-He 23.4 1.8E+02 0.0038 21.1 4.4 22 185-206 66-87 (91)
275 PF05812 Herpes_BLRF2: Herpesv 23.1 1.4E+02 0.0031 23.5 4.0 18 179-196 5-22 (118)
276 TIGR03017 EpsF chain length de 23.1 5.5E+02 0.012 24.0 8.8 16 224-239 398-413 (444)
277 TIGR03689 pup_AAA proteasome A 23.0 97 0.0021 30.5 3.7 38 175-212 6-43 (512)
278 PF07233 DUF1425: Protein of u 23.0 3.1E+02 0.0068 20.1 6.7 35 22-56 23-59 (94)
279 PRK14148 heat shock protein Gr 23.0 2.1E+02 0.0046 24.4 5.4 7 186-192 49-55 (195)
280 smart00605 CW CW domain. 22.9 1E+02 0.0023 22.5 3.1 22 28-49 58-80 (94)
281 PF13870 DUF4201: Domain of un 22.8 1.9E+02 0.0042 23.7 5.1 38 175-212 96-133 (177)
282 PF08826 DMPK_coil: DMPK coile 22.8 1.5E+02 0.0032 20.5 3.6 36 178-213 19-54 (61)
283 COG3771 Predicted membrane pro 22.7 86 0.0019 23.5 2.5 18 224-241 43-60 (97)
284 PRK13729 conjugal transfer pil 22.7 1.5E+02 0.0032 29.0 4.8 38 174-211 87-124 (475)
285 PF07798 DUF1640: Protein of u 22.6 4.4E+02 0.0096 21.7 7.9 14 221-234 159-172 (177)
286 PF01920 Prefoldin_2: Prefoldi 22.6 1.6E+02 0.0034 21.5 4.1 32 175-206 67-98 (106)
287 KOG1962 B-cell receptor-associ 22.5 90 0.0019 27.2 3.0 26 183-208 171-196 (216)
288 PF08232 Striatin: Striatin fa 22.5 2.3E+02 0.0051 22.5 5.3 26 178-203 26-51 (134)
289 PF12329 TMF_DNA_bd: TATA elem 22.4 2.4E+02 0.0051 20.1 4.8 6 206-211 62-67 (74)
290 PF01299 Lamp: Lysosome-associ 22.2 63 0.0014 29.2 2.2 17 227-243 281-297 (306)
291 PRK06285 chorismate mutase; Pr 22.2 2.9E+02 0.0063 20.4 5.5 31 174-204 11-41 (96)
292 PRK11637 AmiB activator; Provi 22.0 1.7E+02 0.0036 27.7 5.1 29 184-212 89-117 (428)
293 KOG3865 Arrestin [Signal trans 22.0 1.3E+02 0.0028 28.0 4.0 70 1-75 189-277 (402)
294 PRK11637 AmiB activator; Provi 22.0 1.2E+02 0.0027 28.6 4.2 34 175-208 87-120 (428)
295 PF11690 DUF3287: Protein of u 22.0 3.8E+02 0.0083 20.8 6.9 33 178-210 36-68 (109)
296 PF12808 Mto2_bdg: Micro-tubul 21.9 2E+02 0.0043 19.4 3.9 17 195-211 33-49 (52)
297 PRK15249 fimbrial chaperone pr 21.7 2E+02 0.0043 25.4 5.2 42 28-70 177-219 (253)
298 PF08402 TOBE_2: TOBE domain; 21.7 2.5E+02 0.0054 18.5 7.2 65 8-72 1-69 (75)
299 TIGR01005 eps_transp_fam exopo 21.6 4.7E+02 0.01 26.6 8.6 15 224-238 432-446 (754)
300 PF11932 DUF3450: Protein of u 21.6 1.4E+02 0.003 26.1 4.2 39 174-212 53-91 (251)
301 cd00890 Prefoldin Prefoldin is 21.6 1.5E+02 0.0033 22.5 4.0 34 175-208 92-125 (129)
302 PF04859 DUF641: Plant protein 21.6 64 0.0014 25.9 1.8 30 175-204 99-128 (131)
303 COG3879 Uncharacterized protei 21.5 1.8E+02 0.0039 25.9 4.7 41 174-214 61-105 (247)
304 PF11853 DUF3373: Protein of u 21.5 86 0.0019 30.7 3.0 28 185-212 32-59 (489)
305 TIGR01801 CM_A chorismate muta 21.5 3.6E+02 0.0079 20.3 7.0 37 178-214 5-41 (102)
306 PRK09239 chorismate mutase; Pr 21.4 2.6E+02 0.0056 21.3 5.1 32 178-209 11-42 (104)
307 PRK04561 tatA twin arginine tr 21.4 1E+02 0.0022 22.4 2.6 17 219-235 2-18 (75)
308 PRK00736 hypothetical protein; 21.4 2.9E+02 0.0062 19.3 5.0 34 177-210 19-52 (68)
309 PF08112 ATP-synt_E_2: ATP syn 21.3 1.8E+02 0.0039 19.7 3.6 37 173-212 14-51 (56)
310 PF08776 VASP_tetra: VASP tetr 21.3 2.3E+02 0.0051 18.0 4.0 14 180-193 14-27 (40)
311 COG1422 Predicted membrane pro 21.3 1.8E+02 0.004 25.0 4.6 25 176-200 71-95 (201)
312 PHA02849 putative transmembran 21.2 1.1E+02 0.0024 22.4 2.7 19 223-241 21-39 (82)
313 PF11027 DUF2615: Protein of u 21.0 1.4E+02 0.0031 22.9 3.6 23 219-241 51-73 (103)
314 PRK03947 prefoldin subunit alp 21.0 2.6E+02 0.0057 21.9 5.3 28 178-205 7-34 (140)
315 PF02285 COX8: Cytochrome oxid 20.9 95 0.0021 20.2 2.2 17 226-242 18-36 (44)
316 PF08286 Spc24: Spc24 subunit 20.8 33 0.00071 26.6 0.0 14 195-208 24-37 (118)
317 COG1930 CbiN ABC-type cobalt t 20.8 23 0.00051 26.7 -0.8 20 222-241 66-85 (97)
318 PRK00846 hypothetical protein; 20.7 3E+02 0.0065 20.0 5.0 34 178-211 28-61 (77)
319 PF08277 PAN_3: PAN-like domai 20.7 1.1E+02 0.0025 20.7 2.8 19 25-43 53-71 (71)
320 PF10473 CENP-F_leu_zip: Leuci 20.7 2.3E+02 0.005 22.9 4.9 29 183-211 51-79 (140)
321 PRK04406 hypothetical protein; 20.6 2.8E+02 0.006 19.9 4.8 34 177-210 25-58 (75)
322 TIGR01808 CM_M_hiGC-arch monof 20.6 3.2E+02 0.0069 19.3 5.8 31 181-211 4-34 (74)
323 COG0598 CorA Mg2+ and Co2+ tra 20.6 4.5E+02 0.0098 23.8 7.5 22 220-242 297-318 (322)
324 PF11382 DUF3186: Protein of u 20.6 2.1E+02 0.0045 26.1 5.2 24 184-207 39-62 (308)
325 PF11382 DUF3186: Protein of u 20.6 1.5E+02 0.0032 27.1 4.2 30 174-203 36-65 (308)
326 PF07790 DUF1628: Protein of u 20.6 88 0.0019 22.2 2.2 22 220-241 8-29 (80)
327 PF08614 ATG16: Autophagy prot 20.5 2.1E+02 0.0045 24.0 4.8 23 186-208 132-154 (194)
328 PHA00024 IX minor coat protein 20.4 1.1E+02 0.0024 18.6 2.2 16 226-241 4-19 (33)
329 PHA03385 IX capsid protein IX, 20.3 1.6E+02 0.0034 23.5 3.7 27 187-213 103-129 (135)
330 PF02038 ATP1G1_PLM_MAT8: ATP1 20.3 1.1E+02 0.0024 20.5 2.4 14 223-236 19-32 (50)
331 PF05101 VirB3: Type IV secret 20.3 1.2E+02 0.0026 21.9 2.9 22 219-240 20-41 (89)
332 PF05542 DUF760: Protein of un 20.2 65 0.0014 23.6 1.5 21 222-242 54-74 (86)
333 PRK15192 fimbrial chaperone Bc 20.1 2.3E+02 0.005 24.8 5.2 39 28-70 163-202 (234)
334 PRK15295 fimbrial assembly cha 20.1 2.4E+02 0.0052 24.4 5.3 39 28-70 158-197 (226)
335 PF10031 DUF2273: Small integr 20.0 1.2E+02 0.0025 20.2 2.5 18 223-240 32-49 (51)
No 1
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.97 E-value=6.6e-31 Score=220.83 Aligned_cols=119 Identities=35% Similarity=0.601 Sum_probs=110.7
Q ss_pred eEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEeccCCCCC-CCCCCCc
Q 026107 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP-PDMQCKD 86 (243)
Q Consensus 8 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p-~~~~~kD 86 (243)
|+|+|. +.|..|++...++.+.|.|++.++|+||||||+|+.||||||.|+|.|++++.|.|+||++++.| +|.+|||
T Consensus 3 veisp~-~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd 81 (242)
T COG5066 3 VEISPQ-TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD 81 (242)
T ss_pred eEecCc-eEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence 567776 56777999999999999999999999999999999999999999999999999999999999887 8999999
Q ss_pred eEEEEEEEcCCCCCcCCCchhhhcccCCCceeEEEeEEEEEC
Q 026107 87 KFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVA 128 (243)
Q Consensus 87 KFlVqs~~v~~~~~~~d~~~~~w~~~~~~~i~e~kL~v~~~~ 128 (243)
|||||+...+.+..-.|+ .++|+..++.-|.++||+|+|.-
T Consensus 82 KFLiqs~~~~~~l~g~d~-ad~wt~~sk~~i~~rkIrcvyse 122 (242)
T COG5066 82 KFLIQSYRFDWRLSGSDF-ADHWTSSSKKPIWTRKIRCVYSE 122 (242)
T ss_pred eeEEEEeccChhhccchH-HHHHHhhccccchhhheeEEeec
Confidence 999999999987777788 89999998888999999999983
No 2
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.2e-28 Score=209.93 Aligned_cols=134 Identities=48% Similarity=0.768 Sum_probs=120.8
Q ss_pred CCCCCCceEEeC-CeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEeccCCCCC
Q 026107 1 MMSTGELLNIEP-QELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP 79 (243)
Q Consensus 1 m~~~~~ll~i~P-~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p 79 (243)
|++.+.+|.|+| .+|.|++++++++.+.|+|+|+++.++|||||||+|++||||||.|+|.||++++|.|++|+....|
T Consensus 2 ~~~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P 81 (218)
T KOG0439|consen 2 MLETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSP 81 (218)
T ss_pred CccccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCc
Confidence 677789999999 6999999999889999999999999999999999999999999999999999999999999987778
Q ss_pred CCCCCCceEEEEEEEcCCCCCcCCCchhhhcccC--CCceeEEEeEEEEECCCCCCCCC
Q 026107 80 PDMQCKDKFLLQGVVASPGATAKDITPEMFNKEA--GHHVEECKLRVLYVAPPRPPSPV 136 (243)
Q Consensus 80 ~~~~~kDKFlVqs~~v~~~~~~~d~~~~~w~~~~--~~~i~e~kL~v~~~~~~~~~s~~ 136 (243)
.|.+|+|||+||++.++.+ +..++ .+.|.... +..+.+.+++|.|+.|..+++..
T Consensus 82 ~d~~~r~kF~v~~~~~~~~-~~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~ 138 (218)
T KOG0439|consen 82 PDFKSRHKFLIQSLKAPPP-TTRDV-VDLWKFQKETPKESFETKLRVVFVAPTETDSVV 138 (218)
T ss_pred hhhcccceEEEEEEecCCc-cccch-hhhccccccccccccceeeEEEeeCCCCCcccc
Confidence 8989999999999999976 33344 67888776 78999999999999988765544
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.90 E-value=2.3e-23 Score=160.31 Aligned_cols=104 Identities=36% Similarity=0.625 Sum_probs=82.4
Q ss_pred eEEeCC-eeeecccCCCeeeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEeccCCCCCCCCCCCc
Q 026107 8 LNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKD 86 (243)
Q Consensus 8 l~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p~~~~~kD 86 (243)
|.|+|. .|.|..++++...+.|+|+|+++++||||||||+|.+|+|+|+.|+|.||+++.|.|++++....+.. ..+|
T Consensus 2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~~~~~~~~~-~~~d 80 (109)
T PF00635_consen 2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQPFDFEPSN-KKKD 80 (109)
T ss_dssp CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE-SSSTTTTS-TSSE
T ss_pred eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEEecccCCCC-CCCC
Confidence 789996 89999999999999999999999999999999999999999999999999999999999997644432 2399
Q ss_pred eEEEEEEEcCCCCCcC-CCchhhhccc
Q 026107 87 KFLLQGVVASPGATAK-DITPEMFNKE 112 (243)
Q Consensus 87 KFlVqs~~v~~~~~~~-d~~~~~w~~~ 112 (243)
||+|+++.++++.... +....+|++.
T Consensus 81 kf~I~~~~~~~~~~~~~~~~~~~~~~~ 107 (109)
T PF00635_consen 81 KFLIQSIVVPDNATDPKKDFKQIWKNG 107 (109)
T ss_dssp EEEEEEEEE-TT-SSSHHHHHCCHHHS
T ss_pred EEEEEEEEcCCCccchhhhHHHHHhcc
Confidence 9999999998765321 2125667654
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.60 E-value=8.8e-07 Score=67.16 Aligned_cols=70 Identities=23% Similarity=0.425 Sum_probs=61.3
Q ss_pred CceEEeCCeeeecc-cCCCeeeEEEEEEcCCCCeEEEEEeecC--CCcEEEeCCceeeCCCCEEEEEEEeccC
Q 026107 6 ELLNIEPQELQFPF-ELRKQISCSLQLSNKTDNYVAFKVKTTN--PKKYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (243)
Q Consensus 6 ~ll~i~P~eL~F~~-~~~~~~~~~l~L~N~s~~~VaFKVKTT~--p~~Y~VrP~~GiI~P~~s~~V~Itlq~~ 75 (243)
+.|.++|.+|.|-. ..+......++|+|.+..+..|+|+.-. ...|.|.|..|+|.||++.++.|++.+.
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~ 74 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPT 74 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeC
Confidence 46899999999965 4567889999999999999999998543 4689999999999999999999999854
No 5
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=97.01 E-value=0.01 Score=46.23 Aligned_cols=109 Identities=19% Similarity=0.266 Sum_probs=71.9
Q ss_pred eEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecC---C------CcEEEeCCceeeCCCCEEEEEEEeccCCCC
Q 026107 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN---P------KKYCVRPNTGVVLPRSTCDVIVTMQSQKEA 78 (243)
Q Consensus 8 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~---p------~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~ 78 (243)
|.|.|..+.|... .-...++|+|.++.++.+.+.... . ..+.|.|..-.|+||++..|.| +.... .
T Consensus 2 i~i~~trii~~~~---~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~~~-~ 76 (122)
T PF00345_consen 2 IQISPTRIIFNES---QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRGSK-L 76 (122)
T ss_dssp EEESSSEEEEETT---SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EECSG-S
T ss_pred EEEccEEEEEeCC---CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-EecCC-C
Confidence 6788999999863 347899999999999999987664 1 2789999999999999999999 44322 3
Q ss_pred CCCCCCCceEEEEEEEcCCCCCcCCCchhhhcccCCCceeEEEeEEEEECC
Q 026107 79 PPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAP 129 (243)
Q Consensus 79 p~~~~~kDKFlVqs~~v~~~~~~~d~~~~~w~~~~~~~i~e~kL~v~~~~~ 129 (243)
+.+....-++.|..++..... .+ .+..-.....+.+++.|-+.
T Consensus 77 ~~~~E~~yrl~~~~iP~~~~~--~~------~~~~v~i~~~~~i~v~~rP~ 119 (122)
T PF00345_consen 77 PIDRESLYRLSFREIPPSEAE--NE------SKNGVQIALRYSIPVFYRPA 119 (122)
T ss_dssp -SSS-EEEEEEEEEEESCCTT--SS------SSSEEEEEEEEEEEEEEEET
T ss_pred CCCceEEEEEEEEEEeccccc--cc------ccceEEEEEEEEEEEEECch
Confidence 444333344455555554310 00 01111234667777777643
No 6
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.95 E-value=0.014 Score=50.41 Aligned_cols=68 Identities=25% Similarity=0.318 Sum_probs=41.3
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--Ccc-HHHHHHHHHHHHHHHHHhc
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRRQANRSSS--GLP-FIYVVIVGFIGIILGYLMK 241 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~~~~~~~--g~~-~~~v~~v~ll~~llg~~~~ 241 (243)
+++.+++++.+++..|++|++++.+|...+++|.+.++.+...... -+- ++.=.+|+++|+|||.++-
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlilp 192 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLLP 192 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 4555666667777777777777777777777776655543221111 122 2222677788888887763
No 7
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=94.08 E-value=0.73 Score=40.25 Aligned_cols=84 Identities=15% Similarity=0.114 Sum_probs=59.4
Q ss_pred ceEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecCC-----CcEEEeCCceeeCCCCEEEEEEEeccCCCCCCC
Q 026107 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNP-----KKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPD 81 (243)
Q Consensus 7 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p-----~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p~~ 81 (243)
-|.+.|..+.|... .-...++|+|.++.++......... .-|.|.|..-.|+||++..|.|.+.. ..|.|
T Consensus 25 ~v~l~~tRvi~~~~---~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~--~lp~d 99 (230)
T PRK09918 25 GMVPETSVVIVEES---DGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKS--GSPLN 99 (230)
T ss_pred eEEEccEEEEEECC---CCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECC--CCCCC
Confidence 46788888888763 3568999999999887766654322 35999999999999999999998764 24444
Q ss_pred CCCCceEEEEEEEcCC
Q 026107 82 MQCKDKFLLQGVVASP 97 (243)
Q Consensus 82 ~~~kDKFlVqs~~v~~ 97 (243)
.. -=|.+-...+|+
T Consensus 100 rE--s~f~l~v~~IP~ 113 (230)
T PRK09918 100 TE--HLLRVSFEGVPP 113 (230)
T ss_pred ee--EEEEEEEEEcCC
Confidence 22 224444444443
No 8
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=93.44 E-value=0.91 Score=40.09 Aligned_cols=87 Identities=14% Similarity=0.230 Sum_probs=61.9
Q ss_pred CceEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecCCC----------cEEEeCCceeeCCCCEEEEEEEeccC
Q 026107 6 ELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPK----------KYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (243)
Q Consensus 6 ~ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~----------~Y~VrP~~GiI~P~~s~~V~Itlq~~ 75 (243)
--|.|+|..+.|+.. .-...++|.|.++.++.-......-+ -|.|-|..-.|+||+...|.|.....
T Consensus 25 A~i~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~ 101 (246)
T PRK09926 25 ADIVISGTRIIYKSD---QKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTAS 101 (246)
T ss_pred eeEEeCceEEEEeCC---CceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCCC
Confidence 357888888999863 34689999999998877776554221 39999999999999999999998653
Q ss_pred CCCCCCCCCCceEEEEEEEcCC
Q 026107 76 KEAPPDMQCKDKFLLQGVVASP 97 (243)
Q Consensus 76 ~~~p~~~~~kDKFlVqs~~v~~ 97 (243)
...|.|...- |.+-.-.+|+
T Consensus 102 ~~lP~DrESl--f~lnv~eIP~ 121 (246)
T PRK09926 102 TALPKDRESV--FWFNVLEVPP 121 (246)
T ss_pred CCCCCCceEE--EEEEeeecCC
Confidence 1255543322 4444444443
No 9
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=93.28 E-value=1.1 Score=39.77 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=54.3
Q ss_pred ceEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecC------C-----CcEEEeCCceeeCCCCEEEEEEEeccC
Q 026107 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN------P-----KKYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (243)
Q Consensus 7 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~------p-----~~Y~VrP~~GiI~P~~s~~V~Itlq~~ 75 (243)
-|.|.|..+.|+.. .-...|+|.|.++.++.-...+.. | ..|.|-|+.-.|+||+...|.|.....
T Consensus 29 ~l~l~~TRviy~~~---~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~ 105 (253)
T PRK15249 29 SVTILGSRIIYPST---ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNNT 105 (253)
T ss_pred EEEeCceEEEEeCC---CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEcCC
Confidence 47888989999753 246899999999987766654322 1 139999999999999999999998752
Q ss_pred CCCCCC
Q 026107 76 KEAPPD 81 (243)
Q Consensus 76 ~~~p~~ 81 (243)
...|.|
T Consensus 106 ~~lP~D 111 (253)
T PRK15249 106 KKLPQD 111 (253)
T ss_pred CCCCCC
Confidence 235555
No 10
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=92.88 E-value=0.68 Score=29.93 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=35.0
Q ss_pred EEEEcCCCCeEE-EEEeecCCCcEEEeCCceeeCCCCEEEEEEEe
Q 026107 29 LQLSNKTDNYVA-FKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTM 72 (243)
Q Consensus 29 l~L~N~s~~~Va-FKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itl 72 (243)
.+++|.++.++. .+|+| +=+-..+......|.||++..|.|++
T Consensus 2 F~~~N~g~~~L~I~~v~t-sCgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQT-SCGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeE-ccCCEEeeCCcceECCCCEEEEEEEC
Confidence 579999997654 55665 56788888889999999999999864
No 11
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=92.33 E-value=0.81 Score=43.53 Aligned_cols=63 Identities=19% Similarity=0.360 Sum_probs=51.9
Q ss_pred eeeecccCCCeeeEEEE-EEcCCCCeEEEEEeecC------------CCcEEEeCCceeeCCCCEEEEEEEeccCC
Q 026107 14 ELQFPFELRKQISCSLQ-LSNKTDNYVAFKVKTTN------------PKKYCVRPNTGVVLPRSTCDVIVTMQSQK 76 (243)
Q Consensus 14 eL~F~~~~~~~~~~~l~-L~N~s~~~VaFKVKTT~------------p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~ 76 (243)
.|.|.-.........|. |.|.+..-|-|.-+--. ...|....+.|+|.||++..+.|++++..
T Consensus 238 ~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~s~~ 313 (426)
T PF14646_consen 238 RLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFKSRK 313 (426)
T ss_pred EEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEeCCC
Confidence 68888766666666666 99999999999876432 35789999999999999999999999864
No 12
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=91.96 E-value=1.8 Score=38.07 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=59.3
Q ss_pred CceEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeec------------CCCcEEEeCCceeeCCCCEEEEEEEec
Q 026107 6 ELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTT------------NPKKYCVRPNTGVVLPRSTCDVIVTMQ 73 (243)
Q Consensus 6 ~ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT------------~p~~Y~VrP~~GiI~P~~s~~V~Itlq 73 (243)
.-|.+++..+.|+.. .-...++|.|.++++..=..... ....|.|-|..-.|+||+...+.|...
T Consensus 26 A~v~l~~TRvIy~~~---~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~ 102 (236)
T PRK11385 26 AGVVVGGTRFIFPAD---RESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRT 102 (236)
T ss_pred eeEEeCceEEEEcCC---CceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 346778888999763 35689999999998744433211 113499999999999999999999987
Q ss_pred cCCCCCCCCCCCceEEEEEEEcCC
Q 026107 74 SQKEAPPDMQCKDKFLLQGVVASP 97 (243)
Q Consensus 74 ~~~~~p~~~~~kDKFlVqs~~v~~ 97 (243)
.....|.|.. .=|-+-...+|+
T Consensus 103 ~~~~LP~DRE--Slf~lnv~~IPp 124 (236)
T PRK11385 103 ESDILPVDRE--TLFELSIASVPS 124 (236)
T ss_pred CCCCCCCCce--EEEEEEEEecCC
Confidence 5323565532 334444445554
No 13
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=91.94 E-value=2.2 Score=37.27 Aligned_cols=85 Identities=12% Similarity=0.082 Sum_probs=57.8
Q ss_pred ceEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecC-------CCcEEEeCCceeeCCCCEEEEEEEeccCCCCC
Q 026107 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN-------PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP 79 (243)
Q Consensus 7 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~-------p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p 79 (243)
-|.+++..+.|+.. .-...++|.|.++.++.=...... ..-|.|-|+.-.|+||+...|.|..... ..|
T Consensus 20 ~i~l~~TRvI~~~~---~~~~si~i~N~~~~p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~~-~LP 95 (226)
T PRK15295 20 SIVVGGTRLVFDGN---NDESSINVENKDSKANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSGA-PLP 95 (226)
T ss_pred cEEeCceEEEEeCC---CceeEEEEEeCCCCcEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECCC-CCC
Confidence 46788888999773 346899999999886543332221 1259999999999999999999988643 245
Q ss_pred CCCCCCceEEEEEEEcCC
Q 026107 80 PDMQCKDKFLLQGVVASP 97 (243)
Q Consensus 80 ~~~~~kDKFlVqs~~v~~ 97 (243)
.|.. -=|.+-...+|+
T Consensus 96 ~DrE--slf~lnv~~IP~ 111 (226)
T PRK15295 96 ADRE--SMYWLNIKGIPS 111 (226)
T ss_pred CCce--EEEEEEEEEcCC
Confidence 5422 224444444554
No 14
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=91.79 E-value=2.4 Score=37.22 Aligned_cols=86 Identities=21% Similarity=0.287 Sum_probs=59.9
Q ss_pred ceEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecC------CC----cEEEeCCceeeCCCCEEEEEEEeccCC
Q 026107 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN------PK----KYCVRPNTGVVLPRSTCDVIVTMQSQK 76 (243)
Q Consensus 7 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~------p~----~Y~VrP~~GiI~P~~s~~V~Itlq~~~ 76 (243)
-|.|.+..+.|+.. .-...++|.|.++.++.=...... |. -|.|-|..-.|+||+...|.|......
T Consensus 11 ~v~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~~ 87 (233)
T PRK15246 11 AVNIDRTRIIFASD---DVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSSRQ 87 (233)
T ss_pred EEEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEECCCC
Confidence 47788888999863 356899999999987554443221 11 499999999999999999999986433
Q ss_pred CCCCCCCCCceEEEEEEEcCC
Q 026107 77 EAPPDMQCKDKFLLQGVVASP 97 (243)
Q Consensus 77 ~~p~~~~~kDKFlVqs~~v~~ 97 (243)
..|.|.. -=|-+-...+|+
T Consensus 88 ~LP~DRE--Slf~lnv~~IP~ 106 (233)
T PRK15246 88 QLATDRE--SLFWLNIYQIPP 106 (233)
T ss_pred CCCCCce--EEEEEEEEEcCC
Confidence 3555422 234455555554
No 15
>PRK10132 hypothetical protein; Provisional
Probab=91.58 E-value=0.76 Score=35.68 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.9
Q ss_pred CCccHHHHHHHHHHHHHHHHHhcc
Q 026107 219 SGLPFIYVVIVGFIGIILGYLMKK 242 (243)
Q Consensus 219 ~g~~~~~v~~v~ll~~llg~~~~~ 242 (243)
..-|+.-|.+.+.+|||||+++++
T Consensus 83 ~~~Pw~svgiaagvG~llG~Ll~R 106 (108)
T PRK10132 83 RERPWCSVGTAAAVGIFIGALLSL 106 (108)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHhc
Confidence 457889999999999999999876
No 16
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=91.51 E-value=2.6 Score=36.90 Aligned_cols=85 Identities=15% Similarity=0.148 Sum_probs=58.5
Q ss_pred ceEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecC------CCcEEEeCCceeeCCCCEEEEEEEeccCCCCCC
Q 026107 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN------PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPP 80 (243)
Q Consensus 7 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~------p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p~ 80 (243)
-|.+++..+.|+.. .-...++|+|.++.++.-...... ..-|.|-|+.-.|+||+...|.|..... ..|.
T Consensus 23 ~v~l~~TRvIy~~~---~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~-~LP~ 98 (229)
T PRK15211 23 AFVLNGTRFIYDEG---RKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKTDS-ALPK 98 (229)
T ss_pred EEEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 36777788888763 346899999999987554443211 1249999999999999999999998753 3565
Q ss_pred CCCCCceEEEEEEEcCC
Q 026107 81 DMQCKDKFLLQGVVASP 97 (243)
Q Consensus 81 ~~~~kDKFlVqs~~v~~ 97 (243)
|.. -=|-+-...+|+
T Consensus 99 DRE--Slf~lnv~~IP~ 113 (229)
T PRK15211 99 DRE--SLFWLNVQEIPP 113 (229)
T ss_pred Cce--EEEEEEEEEcCC
Confidence 533 234444444444
No 17
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=91.33 E-value=2.7 Score=36.66 Aligned_cols=86 Identities=13% Similarity=0.093 Sum_probs=59.9
Q ss_pred CceEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecC--------CCcEEEeCCceeeCCCCEEEEEEEeccCCC
Q 026107 6 ELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN--------PKKYCVRPNTGVVLPRSTCDVIVTMQSQKE 77 (243)
Q Consensus 6 ~ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~--------p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~ 77 (243)
.-|.|+|..+.|+.. .-...|+|+|.++.++.-...+.. ...|.|-|..-.|+||+...|.|..... .
T Consensus 22 a~i~l~~TRvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~ 97 (227)
T PRK15299 22 AGINIGTTRVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGG-N 97 (227)
T ss_pred eeEEECceEEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECCC-C
Confidence 347788888999764 346899999999887666554322 1249999999999999999999987653 2
Q ss_pred CCCCCCCCceEEEEEEEcCC
Q 026107 78 APPDMQCKDKFLLQGVVASP 97 (243)
Q Consensus 78 ~p~~~~~kDKFlVqs~~v~~ 97 (243)
.|.|.. .=|.+-.-.+|+
T Consensus 98 lP~DrE--slf~lnv~eIP~ 115 (227)
T PRK15299 98 LPEDRE--SLYWLDIKSIPS 115 (227)
T ss_pred CCCcce--EEEEEEeEecCC
Confidence 455532 224444444544
No 18
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=90.76 E-value=1.2 Score=34.40 Aligned_cols=51 Identities=22% Similarity=0.269 Sum_probs=36.0
Q ss_pred eeEEEEEEcCCCCeEEEEEeecCCCcEEE-eCCce-eeCCCCEEEEEEEeccC
Q 026107 25 ISCSLQLSNKTDNYVAFKVKTTNPKKYCV-RPNTG-VVLPRSTCDVIVTMQSQ 75 (243)
Q Consensus 25 ~~~~l~L~N~s~~~VaFKVKTT~p~~Y~V-rP~~G-iI~P~~s~~V~Itlq~~ 75 (243)
-..+++|.|.++++..|.|+...+..+.+ .|... -|.||++..+.|.+...
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p 85 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAP 85 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEEC
Confidence 45799999999999999999988888888 67555 49999999998887654
No 19
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=90.48 E-value=3.2 Score=36.49 Aligned_cols=83 Identities=16% Similarity=0.184 Sum_probs=57.9
Q ss_pred ceEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeec----------C----CCcEEEeCCceeeCCCCEEEEEEEe
Q 026107 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTT----------N----PKKYCVRPNTGVVLPRSTCDVIVTM 72 (243)
Q Consensus 7 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT----------~----p~~Y~VrP~~GiI~P~~s~~V~Itl 72 (243)
-|.++...+.|+.. .-...++|.|.++.+ |=|++. . ..-|.|-|..-.|+||+...+.|..
T Consensus 23 gi~l~~TRvIy~~~---~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~~ 97 (234)
T PRK15192 23 GVVIGGTRFIYHAG---APALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVY 97 (234)
T ss_pred eEEeCceEEEEcCC---CceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEEE
Confidence 36677778888763 346899999999886 555541 1 1149999999999999999999998
Q ss_pred ccCCCCCCCCCCCceEEEEEEEcCC
Q 026107 73 QSQKEAPPDMQCKDKFLLQGVVASP 97 (243)
Q Consensus 73 q~~~~~p~~~~~kDKFlVqs~~v~~ 97 (243)
... ..|.|.. -=|-+-...+|+
T Consensus 98 ~~~-~LP~DRE--Slf~lnv~~IPp 119 (234)
T PRK15192 98 TGA-PLPADRE--SLFTLSIAAIPS 119 (234)
T ss_pred CCC-CCCCcce--EEEEEEEEecCC
Confidence 753 2565522 334444455554
No 20
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=89.48 E-value=4.7 Score=35.64 Aligned_cols=86 Identities=13% Similarity=0.076 Sum_probs=59.7
Q ss_pred ceEEeCCeeeecccCCCeeeEEEEEEcCCC-CeEEEEEeecCC-------CcEEEeCCceeeCCCCEEEEEEEeccCCCC
Q 026107 7 LLNIEPQELQFPFELRKQISCSLQLSNKTD-NYVAFKVKTTNP-------KKYCVRPNTGVVLPRSTCDVIVTMQSQKEA 78 (243)
Q Consensus 7 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~-~~VaFKVKTT~p-------~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~ 78 (243)
-|.+++..+.|+.. .-...++|+|.++ .++.-....... .-|.|-|+.-.|+||+...|.|........
T Consensus 38 gv~l~~TRvIy~~~---~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~~~L 114 (243)
T PRK15290 38 GVVIGGTRVVYLSN---NPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHTKGVSL 114 (243)
T ss_pred eEEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEEcCCCCC
Confidence 36788888999863 3467999999986 566666655411 149999999999999999999998753235
Q ss_pred CCCCCCCceEEEEEEEcCC
Q 026107 79 PPDMQCKDKFLLQGVVASP 97 (243)
Q Consensus 79 p~~~~~kDKFlVqs~~v~~ 97 (243)
|.|.. -=|.+-.-.+|+
T Consensus 115 P~DRE--Slf~lnv~eIPp 131 (243)
T PRK15290 115 PDDRE--SVFWLNIKNIPP 131 (243)
T ss_pred CCCee--EEEEEEEEEcCC
Confidence 65532 334444444554
No 21
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=89.06 E-value=4.9 Score=35.06 Aligned_cols=72 Identities=11% Similarity=0.147 Sum_probs=51.1
Q ss_pred CceEEeCCeeeecccCCCeeeEEEEEEcCCCC-eEEEEEeecCC-----CcEEEeCCceeeCCCCEEEEEEEeccCCCCC
Q 026107 6 ELLNIEPQELQFPFELRKQISCSLQLSNKTDN-YVAFKVKTTNP-----KKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP 79 (243)
Q Consensus 6 ~ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~VaFKVKTT~p-----~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p 79 (243)
.-|.+.|..+.|+.. .-...++|+|.+++ ++......... .-|.|-|+.-.|+||+...|.|..... ..|
T Consensus 21 agv~l~~TRvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~-~lP 96 (228)
T PRK15208 21 GGVALSSTRVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNITN-TLP 96 (228)
T ss_pred ccEEeCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEECCC-CCC
Confidence 357888888999873 34689999999863 44333222111 239999999999999999999987643 245
Q ss_pred CC
Q 026107 80 PD 81 (243)
Q Consensus 80 ~~ 81 (243)
.|
T Consensus 97 ~D 98 (228)
T PRK15208 97 QD 98 (228)
T ss_pred CC
Confidence 54
No 22
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=88.78 E-value=1.2 Score=32.11 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=21.5
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQEL 207 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~ 207 (243)
.|+.++..|...|..|+.|...+.++|..|+++.
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~ 41 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEEN 41 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4566777777777777777666666644444333
No 23
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=88.44 E-value=1.9 Score=32.09 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.5
Q ss_pred CccHHHHHHHHHHHHHHHHHhcc
Q 026107 220 GLPFIYVVIVGFIGIILGYLMKK 242 (243)
Q Consensus 220 g~~~~~v~~v~ll~~llg~~~~~ 242 (243)
--|+.-|.+.+.+|||||+++.+
T Consensus 71 e~P~~svgiAagvG~llG~Ll~R 93 (94)
T PF05957_consen 71 ENPWQSVGIAAGVGFLLGLLLRR 93 (94)
T ss_pred HChHHHHHHHHHHHHHHHHHHhC
Confidence 46889999999999999999986
No 24
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=87.87 E-value=7.5 Score=34.05 Aligned_cols=86 Identities=13% Similarity=0.224 Sum_probs=57.6
Q ss_pred CceEEeCCeeeecccCCCeeeEEEEEEcCCCC-eEEEEEee-c-C---CCcEEEeCCceeeCCCCEEEEEEEeccCCCCC
Q 026107 6 ELLNIEPQELQFPFELRKQISCSLQLSNKTDN-YVAFKVKT-T-N---PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP 79 (243)
Q Consensus 6 ~ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~VaFKVKT-T-~---p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p 79 (243)
.-|.+++..+.|+.. .-...++|+|.+++ +..-.... + . ..-|.|-|..-.|+||+...+.|..... ..|
T Consensus 27 Agi~l~~TRvIy~~~---~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~-~lP 102 (228)
T PRK15188 27 GGIALGATRVIYPQG---SKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGP-SLP 102 (228)
T ss_pred ceEEECcEEEEEcCC---CceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCC
Confidence 347788888999773 34689999999864 33322222 1 1 1249999999999999999999998753 255
Q ss_pred CCCCCCceEEEEEEEcCC
Q 026107 80 PDMQCKDKFLLQGVVASP 97 (243)
Q Consensus 80 ~~~~~kDKFlVqs~~v~~ 97 (243)
.|.. -=|-+-...+|+
T Consensus 103 ~DRE--Slf~lnv~~IP~ 118 (228)
T PRK15188 103 TDRE--SVFYLNSKAIPS 118 (228)
T ss_pred CCce--EEEEEEEEecCC
Confidence 5532 334444445554
No 25
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.10 E-value=2.6 Score=27.50 Aligned_cols=39 Identities=23% Similarity=0.292 Sum_probs=28.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
++..++-+.+....|+.+.+++.+||+.|+.|+..|+..
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566667777777888888888888888888776643
No 26
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=86.86 E-value=0.78 Score=37.93 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhcCCC
Q 026107 178 KSTEARALISKLTEEKN------------SVIQINNKLQQELELLRRQANRS 217 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~------------~~~~q~~~l~~e~~~l~~~~~~~ 217 (243)
+..++..++.+|++|.+ .+.|+.+++.+|++.+.+.....
T Consensus 41 ~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~ 92 (161)
T PF04420_consen 41 EQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSE 92 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777765 46666777777777766654333
No 27
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=86.85 E-value=1.1 Score=34.73 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=18.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQELELL 210 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l 210 (243)
+++.++..++..|-+|...|+-||.+|++.+..+
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555544
No 28
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=86.83 E-value=9 Score=33.46 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=49.7
Q ss_pred ceEEeCCeeeecccCCCeeeEEEEEEcCCCC-eEEEEEeecC-----CCcEEEeCCceeeCCCCEEEEEEEeccCCCCCC
Q 026107 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDN-YVAFKVKTTN-----PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPP 80 (243)
Q Consensus 7 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~VaFKVKTT~-----p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p~ 80 (243)
-|.+++..+.|+..- -.+.++|.|.+++ +..=...+.. ...|.|-|..-.|+||+...|.|..... ..|.
T Consensus 26 gi~i~~TRvIy~~~~---~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~~~~-~LP~ 101 (229)
T PRK15195 26 GIALGATRVIYPADA---KQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIYAGP-PLAA 101 (229)
T ss_pred eEEECCeEEEEeCCC---ceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 477888888887642 3489999999864 3331111111 1359999999999999999999998643 2455
Q ss_pred C
Q 026107 81 D 81 (243)
Q Consensus 81 ~ 81 (243)
|
T Consensus 102 D 102 (229)
T PRK15195 102 D 102 (229)
T ss_pred C
Confidence 4
No 29
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.02 E-value=14 Score=32.33 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=64.7
Q ss_pred ceEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeec-------CCCcEEEeCCceeeCCCCEEEEEEEeccCCCCC
Q 026107 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTT-------NPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP 79 (243)
Q Consensus 7 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT-------~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p 79 (243)
-+.|.+..+.|+..- -...++|.|.++.++.-.+..- ....|.|-|..-.|+||+...|.|.+.+.. .|
T Consensus 28 ~v~i~~TRiI~~~~~---k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~~-lP 103 (235)
T COG3121 28 GVVLGGTRIIYPAGD---KETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGNK-LP 103 (235)
T ss_pred eEEecceEEEEeCCC---ceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecCCC-CC
Confidence 466777788887753 4689999998889999886654 234699999999999999999999998863 56
Q ss_pred CCCCCCceEEEEEEEcCC
Q 026107 80 PDMQCKDKFLLQGVVASP 97 (243)
Q Consensus 80 ~~~~~kDKFlVqs~~v~~ 97 (243)
.|. ..-|-+..-.+|+
T Consensus 104 ~dr--Eslf~lnv~eIPp 119 (235)
T COG3121 104 ADR--ESLFRLNVDEIPP 119 (235)
T ss_pred CCc--eeEEEEEeeecCC
Confidence 653 3455555555554
No 30
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.71 E-value=0.87 Score=32.53 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=20.2
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 172 QYEPQDKSTEARALISKLTEEKNSVIQINNKLQQE 206 (243)
Q Consensus 172 ~~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e 206 (243)
+++|+++-..+.++.+.++..+.++.++|++|++|
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555666666666544
No 31
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=85.01 E-value=13 Score=32.67 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=57.0
Q ss_pred ceEEeCCeeeecccCCCeeeEEEEEEcCCC-CeEEEEEeec--C--C-CcEEEeCCceeeCCCCEEEEEEEecc--CCCC
Q 026107 7 LLNIEPQELQFPFELRKQISCSLQLSNKTD-NYVAFKVKTT--N--P-KKYCVRPNTGVVLPRSTCDVIVTMQS--QKEA 78 (243)
Q Consensus 7 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~-~~VaFKVKTT--~--p-~~Y~VrP~~GiI~P~~s~~V~Itlq~--~~~~ 78 (243)
-|.+++..+.|+.. .-...++|.|.++ .++.=..... . + .-|.|-|..-.|+||+...|.|.... ....
T Consensus 17 ~v~l~~TRvIy~~~---~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~~~~~~~l 93 (239)
T PRK15254 17 AVNVDRTRIIMDAP---QKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGLTDKL 93 (239)
T ss_pred eEEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEcccCCCCC
Confidence 46778888999763 3468999999986 4655443321 1 1 25999999999999999999998763 2234
Q ss_pred CCCCCCCceEEEEEEEcCC
Q 026107 79 PPDMQCKDKFLLQGVVASP 97 (243)
Q Consensus 79 p~~~~~kDKFlVqs~~v~~ 97 (243)
|.|.. .=|-+-...+|+
T Consensus 94 P~DRE--Slf~lnv~~IP~ 110 (239)
T PRK15254 94 PQDRE--TLFWFNVRGVPP 110 (239)
T ss_pred CCCce--EEEEEEEEEcCC
Confidence 55422 334444444443
No 32
>PRK10404 hypothetical protein; Provisional
Probab=84.74 E-value=4.9 Score=30.75 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=20.6
Q ss_pred CCccHHHHHHHHHHHHHHHHHhcc
Q 026107 219 SGLPFIYVVIVGFIGIILGYLMKK 242 (243)
Q Consensus 219 ~g~~~~~v~~v~ll~~llg~~~~~ 242 (243)
.--|+.-|-+.+.+|||||+++++
T Consensus 77 ~e~Pw~avGiaagvGlllG~Ll~R 100 (101)
T PRK10404 77 HEKPWQGIGVGAAVGLVLGLLLAR 100 (101)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHhc
Confidence 347888888899999999999876
No 33
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=84.56 E-value=14 Score=32.24 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=55.8
Q ss_pred eEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecCC----------CcEEEeCCceeeCCCCEEEEEEEeccCCC
Q 026107 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNP----------KKYCVRPNTGVVLPRSTCDVIVTMQSQKE 77 (243)
Q Consensus 8 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p----------~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~ 77 (243)
|.++-..+.|+.. .-...++|.|.++.+..=....... ..|.|-|+.-.|+||+...+.|..... .
T Consensus 20 i~l~~TRvIy~~~---~~~~si~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~-~ 95 (226)
T PRK15218 20 IYIYGTRIIYPAQ---KKDITVQLMNDGKRSSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLAN-N 95 (226)
T ss_pred EEeCceEEEEcCC---CcEEEEEEEcCCCCcEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC-C
Confidence 4455557888752 3467899999998864433322221 159999999999999999999998653 3
Q ss_pred CCCCCCCCceEEEEEEEcCC
Q 026107 78 APPDMQCKDKFLLQGVVASP 97 (243)
Q Consensus 78 ~p~~~~~kDKFlVqs~~v~~ 97 (243)
.|.|. .-=|.+-...+|+
T Consensus 96 LP~DR--ESlfwlnv~~IPp 113 (226)
T PRK15218 96 LPGDR--ESLFYLNVLDIPP 113 (226)
T ss_pred CCcce--eEEEEEEEEEcCC
Confidence 56552 2334455555664
No 34
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=84.20 E-value=3.9 Score=24.60 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 186 ISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 186 i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
-.+|..|.+.+++.+++|+..++.||.
T Consensus 3 EqkL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 3 EQKLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356777888899999999999998874
No 35
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=83.83 E-value=1.8 Score=31.68 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=15.8
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQEL 207 (243)
Q Consensus 173 ~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~ 207 (243)
++||++-..+..++..+...+..+.++|.+|++|.
T Consensus 28 eELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~ 62 (79)
T PRK15422 28 EELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444444444444444444444555555554443
No 36
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=83.65 E-value=3.6 Score=31.43 Aligned_cols=53 Identities=25% Similarity=0.360 Sum_probs=32.9
Q ss_pred CeeeEEEEEEcCCCCeEEEEEeec-----C---CCcEE--Ee-----------CCceeeCCCCEEEEEEEeccC
Q 026107 23 KQISCSLQLSNKTDNYVAFKVKTT-----N---PKKYC--VR-----------PNTGVVLPRSTCDVIVTMQSQ 75 (243)
Q Consensus 23 ~~~~~~l~L~N~s~~~VaFKVKTT-----~---p~~Y~--Vr-----------P~~GiI~P~~s~~V~Itlq~~ 75 (243)
...+..|+|+|.+++.+.|++.-. . .+.|. +. |..=.|+||++.+|.|++...
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEeh
Confidence 446789999999999999998655 1 12222 11 222357889999999988763
No 37
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=83.18 E-value=2.9 Score=29.48 Aligned_cols=38 Identities=11% Similarity=0.094 Sum_probs=25.2
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
.|..++.++...+..|++|+..++++...++.|...|.
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ 41 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLL 41 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777777777777766666665555444
No 38
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=82.59 E-value=9.3 Score=29.43 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=20.8
Q ss_pred CCccHHHHHHHHHHHHHHHHHhcc
Q 026107 219 SGLPFIYVVIVGFIGIILGYLMKK 242 (243)
Q Consensus 219 ~g~~~~~v~~v~ll~~llg~~~~~ 242 (243)
+--|++-|-+-+-+|||||.++.+
T Consensus 80 ~e~PWq~VGvaAaVGlllGlLlsR 103 (104)
T COG4575 80 RENPWQGVGVAAAVGLLLGLLLSR 103 (104)
T ss_pred HcCCchHHHHHHHHHHHHHHHHhc
Confidence 457888999999999999999876
No 39
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=82.25 E-value=6.2 Score=27.95 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 026107 224 IYVVIVGFIGIILGYLMK 241 (243)
Q Consensus 224 ~~v~~v~ll~~llg~~~~ 241 (243)
+=.++=+++++++|++++
T Consensus 54 ~r~iiGaiI~~i~~~i~K 71 (71)
T PF10779_consen 54 WRTIIGAIITAIIYLIIK 71 (71)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 334555666777777764
No 40
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=82.09 E-value=3.6 Score=31.64 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=17.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQ 205 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~ 205 (243)
++.+++++++++.+|++++..|.+|.+.|++
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4455555566666666665566666555554
No 41
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=81.82 E-value=2.5 Score=32.93 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=26.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELELL 210 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l 210 (243)
+-+++.++.+++..|-||...|+-||.+|++.+..+
T Consensus 20 l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 20 LLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666777777777777777777777777777765
No 42
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=80.65 E-value=21 Score=31.41 Aligned_cols=82 Identities=12% Similarity=0.194 Sum_probs=55.2
Q ss_pred eEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeec----C---CCcEEEeCCceeeCCCCEEEEEEEeccCCCCCC
Q 026107 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTT----N---PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPP 80 (243)
Q Consensus 8 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT----~---p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p~ 80 (243)
|.++-..+.|+.. .-...++|.|.++.+ |-|++- . ..-|.|-|+.-.|+|++...|.|..... ..|.
T Consensus 30 v~l~~TRvIy~~~---~k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~~~-~LP~ 103 (237)
T PRK15224 30 VKLGATRVIYHAG---TAGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPT 103 (237)
T ss_pred EEeCceEEEEeCC---CcEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCC
Confidence 3444456777752 346799999999876 555541 1 1249999999999999999999998743 3566
Q ss_pred CCCCCceEEEEEEEcCC
Q 026107 81 DMQCKDKFLLQGVVASP 97 (243)
Q Consensus 81 ~~~~kDKFlVqs~~v~~ 97 (243)
|.. -=|-+-...+|+
T Consensus 104 DRE--SlFwlnv~~IPp 118 (237)
T PRK15224 104 DRE--TLQWVCIKAVPP 118 (237)
T ss_pred cee--EEEEEEEEEcCC
Confidence 522 234444455554
No 43
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=79.95 E-value=4.7 Score=37.74 Aligned_cols=54 Identities=15% Similarity=0.280 Sum_probs=40.0
Q ss_pred CCeeeEEEEEEcCCCCeEEEEEeecC------C-CcEEEeCCcee--------------eCCCCEEEEEEEeccC
Q 026107 22 RKQISCSLQLSNKTDNYVAFKVKTTN------P-KKYCVRPNTGV--------------VLPRSTCDVIVTMQSQ 75 (243)
Q Consensus 22 ~~~~~~~l~L~N~s~~~VaFKVKTT~------p-~~Y~VrP~~Gi--------------I~P~~s~~V~Itlq~~ 75 (243)
.+..+-+++++|.++++|-.+==+|+ | ..|...|++.- |.|||+.+|.|..|.-
T Consensus 281 GR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqdA 355 (399)
T TIGR03079 281 GRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKDA 355 (399)
T ss_pred CcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEehh
Confidence 57888999999999999988754554 4 34444444332 7899999999988754
No 44
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=79.73 E-value=6.1 Score=38.74 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 181 EARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 181 e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
-+++-+++|..|.++|++||..|+++++.+..
T Consensus 306 ~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 306 GLEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 34555666666667777777777777775543
No 45
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=79.68 E-value=27 Score=30.96 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=53.2
Q ss_pred EEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEee--c--C---CCcEEEeCCceeeCCCCEEEEEEEeccCCCCCCC
Q 026107 9 NIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKT--T--N---PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPD 81 (243)
Q Consensus 9 ~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKT--T--~---p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p~~ 81 (243)
.++-..+.|+.. .-...++|.|.++.+ |-|++ . . ..-|.|-|+.-.|+|++...+.|..... ..|.|
T Consensus 43 ~l~~TRvIy~~~---~~~~sl~i~N~~~~p--~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~~~~-~LP~D 116 (246)
T PRK15233 43 RLGTTRVIYKED---APSTSFWIMNEKEYP--ILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPTSN-LFNKN 116 (246)
T ss_pred EeCceEEEEeCC---CcEEEEEEEcCCCCc--EEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCcC
Confidence 344445666543 246899999988776 44443 1 1 1249999999999999999999998753 35555
Q ss_pred CCCCceEEEEEEEcCC
Q 026107 82 MQCKDKFLLQGVVASP 97 (243)
Q Consensus 82 ~~~kDKFlVqs~~v~~ 97 (243)
.. -=|.+-...+|+
T Consensus 117 RE--Slfwlnv~~IPp 130 (246)
T PRK15233 117 EE--SLYWLCVKGVPP 130 (246)
T ss_pred ce--EEEEEEEEEcCC
Confidence 22 224555555554
No 46
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=79.13 E-value=4.8 Score=31.17 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=38.2
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026107 172 QYEPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRRQA 214 (243)
Q Consensus 172 ~~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~~ 214 (243)
..+++.++.++.+++..|+.+...+.+||..|+-|...||...
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999999999864
No 47
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=79.01 E-value=10 Score=35.52 Aligned_cols=65 Identities=17% Similarity=0.297 Sum_probs=42.4
Q ss_pred eEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecCCCcE----------------------EEeCCceeeCCCCE
Q 026107 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKY----------------------CVRPNTGVVLPRST 65 (243)
Q Consensus 8 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~Y----------------------~VrP~~GiI~P~~s 65 (243)
+.++-..-.|.-| .+..+-+++++|+++.+|-..==+|+.-+| .|.|+ +-|.||++
T Consensus 249 V~~~v~~A~Y~vp-gR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~-~pI~PGET 326 (381)
T PF04744_consen 249 VKVKVTDATYRVP-GRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN-SPIAPGET 326 (381)
T ss_dssp EEEEEEEEEEESS-SSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---S-B-TT-E
T ss_pred eEEEEeccEEecC-CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-CCcCCCce
Confidence 5555555667655 578899999999999999887555544443 34444 35899999
Q ss_pred EEEEEEecc
Q 026107 66 CDVIVTMQS 74 (243)
Q Consensus 66 ~~V~Itlq~ 74 (243)
.++.|..|.
T Consensus 327 rtl~V~a~d 335 (381)
T PF04744_consen 327 RTLTVEAQD 335 (381)
T ss_dssp EEEEEEEE-
T ss_pred EEEEEEeeh
Confidence 999999875
No 48
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=78.74 E-value=15 Score=27.14 Aligned_cols=53 Identities=17% Similarity=0.367 Sum_probs=40.2
Q ss_pred CCeeeEEEEEEcCCCCeEE-EEEeecCCCcEEEe--CCce-eeCCCCEEEEEEEecc
Q 026107 22 RKQISCSLQLSNKTDNYVA-FKVKTTNPKKYCVR--PNTG-VVLPRSTCDVIVTMQS 74 (243)
Q Consensus 22 ~~~~~~~l~L~N~s~~~Va-FKVKTT~p~~Y~Vr--P~~G-iI~P~~s~~V~Itlq~ 74 (243)
.....-.+...|.+..++. |.+.-..|+-+.++ |..| .|.||+.+.-.+.+..
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~~ 73 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVEN 73 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEEC
Confidence 3467888999999987776 88888888877665 5544 7999988777776654
No 49
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=78.64 E-value=4.9 Score=31.28 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=36.9
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 026107 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRRQAN 215 (243)
Q Consensus 173 ~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~~~ 215 (243)
..++.++..+.+++..|+.+...+..||..|+-|.+.||+...
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999999999999998887543
No 50
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=78.08 E-value=2.2 Score=29.85 Aligned_cols=20 Identities=25% Similarity=0.570 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 026107 223 FIYVVIVGFIGIILGYLMKK 242 (243)
Q Consensus 223 ~~~v~~v~ll~~llg~~~~~ 242 (243)
++++++.+++.|.|||++++
T Consensus 7 iQii~l~AlI~~pLGyl~~~ 26 (62)
T PF11120_consen 7 IQIIILCALIFFPLGYLARR 26 (62)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 57889999999999999874
No 51
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=77.97 E-value=31 Score=30.74 Aligned_cols=85 Identities=15% Similarity=0.162 Sum_probs=54.4
Q ss_pred eEEeCCeeeecccCCCeeeEEEEEEcCCCC-eEEEEEeecC------CCcEEEeCCceeeCCCCEEEEEEEecc-CCCCC
Q 026107 8 LNIEPQELQFPFELRKQISCSLQLSNKTDN-YVAFKVKTTN------PKKYCVRPNTGVVLPRSTCDVIVTMQS-QKEAP 79 (243)
Q Consensus 8 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~VaFKVKTT~------p~~Y~VrP~~GiI~P~~s~~V~Itlq~-~~~~p 79 (243)
|.++-..+.|+.. .-...++|+|.++. ++.-...... ..-|.|-|..-.|+||+...|.|...+ ....|
T Consensus 28 i~l~~TRvIy~e~---~~~~sv~v~N~~~~~p~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~~~~~~~LP 104 (257)
T PRK15274 28 IVPDRTRVIFNGN---ENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLP 104 (257)
T ss_pred EEeCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCC
Confidence 3444456888752 34689999999865 5443332211 124999999999999999999999775 23355
Q ss_pred CCCCCCceEEEEEEEcCC
Q 026107 80 PDMQCKDKFLLQGVVASP 97 (243)
Q Consensus 80 ~~~~~kDKFlVqs~~v~~ 97 (243)
.|.. -=|-+-...+|+
T Consensus 105 ~DRE--SlFwlNv~eIPp 120 (257)
T PRK15274 105 QDRE--SLFYFNVREIPP 120 (257)
T ss_pred Ccee--EEEEEEEEEcCC
Confidence 5422 234444445554
No 52
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=77.46 E-value=9.5 Score=26.01 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 180 TEARALISKLTEEKNSVIQINNKLQQELEL 209 (243)
Q Consensus 180 ~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~ 209 (243)
+|+...+.+++-....++.||+.++++++.
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~ 32 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEK 32 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555555544443
No 53
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=77.41 E-value=6.5 Score=27.69 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=14.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 176 QDKSTEARALISKLTEEKNSVIQINNKL 203 (243)
Q Consensus 176 ~~~~~e~~~~i~~L~~e~~~~~~q~~~l 203 (243)
+.+++++..++.+|++|.+.+.++.+.|
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555554
No 54
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=77.37 E-value=5 Score=28.51 Aligned_cols=54 Identities=13% Similarity=0.282 Sum_probs=31.9
Q ss_pred CeeeEEEEEEcCCCCeE-EEEEeecCCCcEE--EeCCc-eeeCCCCEEEEEEEeccCC
Q 026107 23 KQISCSLQLSNKTDNYV-AFKVKTTNPKKYC--VRPNT-GVVLPRSTCDVIVTMQSQK 76 (243)
Q Consensus 23 ~~~~~~l~L~N~s~~~V-aFKVKTT~p~~Y~--VrP~~-GiI~P~~s~~V~Itlq~~~ 76 (243)
....-.++++|.++.++ ..++.-..|.-+. +.|.. +-|.||++..+.+.+.+..
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 45677899999987553 3555555688777 55553 4799999999999987643
No 55
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=76.20 E-value=26 Score=25.18 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 026107 223 FIYVVIVGFIGIILGYLM 240 (243)
Q Consensus 223 ~~~v~~v~ll~~llg~~~ 240 (243)
.+++++.+++|+++|..+
T Consensus 59 ~lil~l~~~~Gl~lgi~~ 76 (82)
T PF13807_consen 59 ALILALGLFLGLILGIGL 76 (82)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666667777777654
No 56
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=75.69 E-value=57 Score=28.80 Aligned_cols=84 Identities=17% Similarity=0.260 Sum_probs=55.2
Q ss_pred eEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecC------C----CcEEEeCCceeeCCCCEEEEEEEeccCCC
Q 026107 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN------P----KKYCVRPNTGVVLPRSTCDVIVTMQSQKE 77 (243)
Q Consensus 8 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~------p----~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~ 77 (243)
|.++-..+.|+.. .-...++|.|.++.+..=...... | .-|.|-|+.-.|+|++...|.|..... .
T Consensus 35 v~l~~TRvIy~~~---~k~~sv~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~-~ 110 (242)
T PRK15253 35 IVIYGTRVIYPAE---KKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMPN-S 110 (242)
T ss_pred EEeCceEEEEeCC---CceEEEEEEcCCCCcEEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC-C
Confidence 4444456778753 346789999999886444332221 1 249999999999999999999987653 3
Q ss_pred CCCCCCCCceEEEEEEEcCC
Q 026107 78 APPDMQCKDKFLLQGVVASP 97 (243)
Q Consensus 78 ~p~~~~~kDKFlVqs~~v~~ 97 (243)
.|.|. .-=|-+-...+|+
T Consensus 111 LP~DR--ESlfwlnv~~IPp 128 (242)
T PRK15253 111 LPDNK--ESLFYLNVLDIPP 128 (242)
T ss_pred CCcce--eEEEEEEEEEcCC
Confidence 56552 2334455555554
No 57
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=75.32 E-value=6.9 Score=28.63 Aligned_cols=37 Identities=27% Similarity=0.235 Sum_probs=30.0
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQELEL 209 (243)
Q Consensus 173 ~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~ 209 (243)
+.|++|...|.+.|.-|+=|...+..+|..|.++...
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999988888888888888776554
No 58
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=74.99 E-value=9.1 Score=27.46 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=21.6
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
.|+-+..++...-..|.+++..+.++|.+|+++..
T Consensus 22 ~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 22 LLQMENEELKEKNNELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666667776665544
No 59
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=74.83 E-value=12 Score=27.28 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=31.0
Q ss_pred eEEEEEEcCCCCeEEEEEee-----cCCCcEEEeCCceeeCCCCEEEEEEEe
Q 026107 26 SCSLQLSNKTDNYVAFKVKT-----TNPKKYCVRPNTGVVLPRSTCDVIVTM 72 (243)
Q Consensus 26 ~~~l~L~N~s~~~VaFKVKT-----T~p~~Y~VrP~~GiI~P~~s~~V~Itl 72 (243)
.-.|+|.|.+...+.|.|.. ..|..|. |.||++..+.+-+
T Consensus 21 ~l~l~l~N~g~~~~~~~v~~~~y~~~~~~~~~-------v~ag~~~~~~w~l 65 (89)
T PF05506_consen 21 NLRLTLSNPGSAAVTFTVYDNAYGGGGPWTYT-------VAAGQTVSLTWPL 65 (89)
T ss_pred EEEEEEEeCCCCcEEEEEEeCCcCCCCCEEEE-------ECCCCEEEEEEee
Confidence 56899999999999999997 3455555 4557887777766
No 60
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.30 E-value=5 Score=34.64 Aligned_cols=60 Identities=15% Similarity=0.065 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCccHHHHHHHHHHHHHHHHHh
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELLRRQANRS---SSGLPFIYVVIVGFIGIILGYLM 240 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~~~~~---~~g~~~~~v~~v~ll~~llg~~~ 240 (243)
...++.++-.+|++|...+..+++.|+.+++.+++....+ .+|. .+++=.|+|++|-|+.
T Consensus 133 ~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~---v~~~GlllGlilp~l~ 195 (206)
T PRK10884 133 VINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGG---VAGIGLLLGLLLPHLI 195 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchH---HHHHHHHHHHHhcccc
Confidence 3334444444455555445555555544444444322111 1332 1223334788888776
No 61
>smart00338 BRLZ basic region leucin zipper.
Probab=74.24 E-value=11 Score=26.02 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=20.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
.+.++...+..|+.|...|..+...|+.+...|+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666665554
No 62
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=73.90 E-value=10 Score=28.16 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHH
Q 026107 190 TEEKNSVIQINNKLQQELELLRRQANRSSSGLPFIYVVIVGFIGIIL 236 (243)
Q Consensus 190 ~~e~~~~~~q~~~l~~e~~~l~~~~~~~~~g~~~~~v~~v~ll~~ll 236 (243)
.+|...+..+.....+++..||+. +-=++++.++++++.||+
T Consensus 42 E~E~~~l~~~l~~~E~eL~~LrkE-----NrK~~~ls~~l~~v~~Lv 83 (85)
T PF15188_consen 42 EKELNELKEKLENNEKELKLLRKE-----NRKSMLLSVALFFVCFLV 83 (85)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHh-----hhhhHHHHHHHHHHHHHH
Confidence 344444444444455666677663 223455555555555554
No 63
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.85 E-value=8.3 Score=27.60 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=24.8
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
.|++|...|.+.|.-|+=|...+...|+.|.+|..
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q 42 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 46678888888887777777777777776655444
No 64
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=73.76 E-value=4.9 Score=26.19 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=27.3
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 172 QYEPQDKSTEARALISKLTEEKNSVIQINNKLQQEL 207 (243)
Q Consensus 172 ~~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~ 207 (243)
++.|+..++.+.+.-..|..|+..++.|...|+..+
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455777788888888888888888888887776543
No 65
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=73.58 E-value=54 Score=29.10 Aligned_cols=85 Identities=18% Similarity=0.141 Sum_probs=52.9
Q ss_pred eEEeCCeeeecccCCCeeeEEEEEEcCCCC-eEEEEEee--cCCC----cEEEeCCceeeCCCCEEEEEEEecc-CCCCC
Q 026107 8 LNIEPQELQFPFELRKQISCSLQLSNKTDN-YVAFKVKT--TNPK----KYCVRPNTGVVLPRSTCDVIVTMQS-QKEAP 79 (243)
Q Consensus 8 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~VaFKVKT--T~p~----~Y~VrP~~GiI~P~~s~~V~Itlq~-~~~~p 79 (243)
|.++-..+.|+.. .-...++|+|.++. ++.=.... ...+ .|.|-|..-.|+||+...+.|...+ ....|
T Consensus 27 v~l~~TRVIy~~~---~~~~sv~i~N~~~~~p~LvQsWvd~~~~~~~~~pFiVtPPlfRl~p~~~~~lRI~~~~~~~~LP 103 (250)
T PRK15285 27 IAPDRTRLVFRGE---DKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASLP 103 (250)
T ss_pred EEeCccEEEEcCC---CceEEEEEEeCCCCCcEEEEEEeeCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCC
Confidence 3444457888752 34679999999865 54433322 1111 3999999999999999999999764 22345
Q ss_pred CCCCCCceEEEEEEEcCC
Q 026107 80 PDMQCKDKFLLQGVVASP 97 (243)
Q Consensus 80 ~~~~~kDKFlVqs~~v~~ 97 (243)
.|.. -=|-+-...+|+
T Consensus 104 ~DRE--Slfwlnv~~IPp 119 (250)
T PRK15285 104 QDRE--TLFYYNVREIPP 119 (250)
T ss_pred CCce--EEEEEEEEEcCC
Confidence 5422 223344444443
No 66
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=71.96 E-value=14 Score=25.36 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
.+.++...+..|+.+...+..++..|+++...|+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666666666666666665544
No 67
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=71.91 E-value=12 Score=25.81 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=15.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 176 QDKSTEARALISKLTEEKNSVIQINNKL 203 (243)
Q Consensus 176 ~~~~~e~~~~i~~L~~e~~~~~~q~~~l 203 (243)
.+..+-+..+|..|.+....+..||..|
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLL 40 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666544444444443
No 68
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=71.42 E-value=6.8 Score=30.39 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=23.4
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
.++.++-.+.+++.-|++...++..||..|+=|.+.||++
T Consensus 12 ~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~R 51 (114)
T COG4467 12 NLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRER 51 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHH
Confidence 3445555666666666666666666666665555555544
No 69
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=70.92 E-value=5.1 Score=27.71 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 026107 224 IYVVIVGFIGIILGYLMK 241 (243)
Q Consensus 224 ~~v~~v~ll~~llg~~~~ 241 (243)
..++++|++|++||+|+.
T Consensus 40 ~~~~~~c~~S~~lG~~~~ 57 (60)
T PF06072_consen 40 FAVVALCVLSGGLGALVA 57 (60)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344588999999999874
No 70
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=69.17 E-value=12 Score=36.24 Aligned_cols=30 Identities=27% Similarity=0.254 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 181 EARALISKLTEEKNSVIQINNKLQQELELL 210 (243)
Q Consensus 181 e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l 210 (243)
-+.+++..++.|...+.+||+.|++|.++|
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L 92 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERL 92 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444443333333
No 71
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=69.13 E-value=6.9 Score=30.06 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
.+.+..+++..+++|++.+.++|+.|+.|...|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 57888999999999999999999999999987764
No 72
>PRK00523 hypothetical protein; Provisional
Probab=68.54 E-value=4.1 Score=29.28 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=14.4
Q ss_pred ccHHHHHHHHHHHHHHHHHhcc
Q 026107 221 LPFIYVVIVGFIGIILGYLMKK 242 (243)
Q Consensus 221 ~~~~~v~~v~ll~~llg~~~~~ 242 (243)
+-+.++++..|+|+++|||+.+
T Consensus 6 l~I~l~i~~li~G~~~Gffiar 27 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556667778888888753
No 73
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=68.11 E-value=22 Score=26.65 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=39.2
Q ss_pred CCCeeeEEEEEEcCCCCe--------EEEEEeecCCC--cEEEeCCceeeCCCCEEEEEEEeccC
Q 026107 21 LRKQISCSLQLSNKTDNY--------VAFKVKTTNPK--KYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (243)
Q Consensus 21 ~~~~~~~~l~L~N~s~~~--------VaFKVKTT~p~--~Y~VrP~~GiI~P~~s~~V~Itlq~~ 75 (243)
.++.....++++|+++.+ .++-|--|.-. .....-..+-|.||++..+.+.+.+.
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPS 77 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HH
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEce
Confidence 467889999999999877 55555544332 25677788999999999999998764
No 74
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=68.04 E-value=10 Score=30.41 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=23.7
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
+|+.+-.++.++|.+|.+|...+.+|+..++.....|.
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666666665555444
No 75
>PRK01844 hypothetical protein; Provisional
Probab=67.55 E-value=4.2 Score=29.25 Aligned_cols=20 Identities=20% Similarity=0.539 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 026107 223 FIYVVIVGFIGIILGYLMKK 242 (243)
Q Consensus 223 ~~~v~~v~ll~~llg~~~~~ 242 (243)
+.++++..|+|+++|||+.+
T Consensus 7 I~l~I~~li~G~~~Gff~ar 26 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777777643
No 76
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=67.13 E-value=8.4 Score=27.12 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
.+.+..+++..|+.+.+.+.++|+.|++++..|+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4668888899999999999999999998888773
No 77
>smart00340 HALZ homeobox associated leucin zipper.
Probab=67.01 E-value=24 Score=22.71 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 189 LTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 189 L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
|+.=-..+..||++|+.|+..||..
T Consensus 10 LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 10 LKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4443445666688899999988864
No 78
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.55 E-value=62 Score=25.46 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHhc
Q 026107 225 YVVIVGFIGIILGYLMK 241 (243)
Q Consensus 225 ~v~~v~ll~~llg~~~~ 241 (243)
.++++.++.++|-|++.
T Consensus 99 ~~v~~i~l~iiii~~~~ 115 (116)
T KOG0860|consen 99 GLVIIILLVVIIIYIFL 115 (116)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33444444455555553
No 79
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=65.62 E-value=30 Score=26.10 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=34.3
Q ss_pred CCCeeeEEEEEEcCCCCeEE-----EEEeecCCCcEEEeC---------CceeeCCCCEEEEEEEecc
Q 026107 21 LRKQISCSLQLSNKTDNYVA-----FKVKTTNPKKYCVRP---------NTGVVLPRSTCDVIVTMQS 74 (243)
Q Consensus 21 ~~~~~~~~l~L~N~s~~~Va-----FKVKTT~p~~Y~VrP---------~~GiI~P~~s~~V~Itlq~ 74 (243)
..+-+.-.++++|.++.++. |++.+..-+.|.... ..+-|.||++++-.|.+.-
T Consensus 34 g~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 34 GNKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp -SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred CCEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 34567889999999998776 788877767776544 3579999999999998854
No 80
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=65.17 E-value=36 Score=29.88 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHhccC
Q 026107 206 ELELLRRQANRSSSGLPFIYVVIVGFIGIILGYLMKKI 243 (243)
Q Consensus 206 e~~~l~~~~~~~~~g~~~~~v~~v~ll~~llg~~~~~~ 243 (243)
+..+|.+.. +...|+.+|+++++.++.|+.-++|=||
T Consensus 214 ~~~rl~~~~-~~~~~~~~~~~i~~v~~~Fi~mvl~iri 250 (251)
T PF09753_consen 214 ESKRLKEHS-SKSWGCWTWLMIFVVIIVFIMMVLFIRI 250 (251)
T ss_pred HHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHhee
Confidence 333444432 2234577777777777778877777654
No 81
>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT. Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=64.62 E-value=7.5 Score=27.06 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 026107 223 FIYVVIVGFIGIILGYLMKK 242 (243)
Q Consensus 223 ~~~v~~v~ll~~llg~~~~~ 242 (243)
+++|++-+|+.|-|||++++
T Consensus 7 lQli~lcALIf~pLgyl~~r 26 (62)
T TIGR03493 7 LQLVLLCALIFFPLGYLARR 26 (62)
T ss_pred HHHHHHHHHHHHhHHHHHHh
Confidence 57888889999999999875
No 82
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=63.88 E-value=20 Score=25.71 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=11.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKL 203 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l 203 (243)
+++.+.+++.++++|.+.|..|...|
T Consensus 32 ~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 32 ELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 83
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=61.86 E-value=19 Score=23.94 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 185 LISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 185 ~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
.+..|+.+...|..+|..|++++..|+
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555566666666665554
No 84
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=60.76 E-value=35 Score=25.74 Aligned_cols=53 Identities=17% Similarity=0.393 Sum_probs=35.9
Q ss_pred CCeeeEEEEEEcCCCCeEE-EEEeecCCCcE--EEeCC-ceeeCCCCEEEEEEEecc
Q 026107 22 RKQISCSLQLSNKTDNYVA-FKVKTTNPKKY--CVRPN-TGVVLPRSTCDVIVTMQS 74 (243)
Q Consensus 22 ~~~~~~~l~L~N~s~~~Va-FKVKTT~p~~Y--~VrP~-~GiI~P~~s~~V~Itlq~ 74 (243)
.....-.++..|.+..++. |.+.-..|+.| .+.|. ...|.|+..++-.+.+..
T Consensus 23 ~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~ 79 (115)
T PF02883_consen 23 PNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVEN 79 (115)
T ss_dssp TTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEE
T ss_pred CCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEE
Confidence 5678889999999988776 77776666655 44566 559999988877666544
No 85
>smart00338 BRLZ basic region leucin zipper.
Probab=60.29 E-value=12 Score=25.77 Aligned_cols=30 Identities=33% Similarity=0.494 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 183 RALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 183 ~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
.+++..|+.+...+..+|..|+.++..|+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~ 54 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRR 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555443
No 86
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=59.81 E-value=8.9 Score=26.42 Aligned_cols=43 Identities=26% Similarity=0.307 Sum_probs=26.7
Q ss_pred EEEEcCCCCeEEEE-EeecCCCcEEEeCCceeeCCCCEEEEEEE
Q 026107 29 LQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGVVLPRSTCDVIVT 71 (243)
Q Consensus 29 l~L~N~s~~~VaFK-VKTT~p~~Y~VrP~~GiI~P~~s~~V~It 71 (243)
|+++|+|..+|.|- ++....++=..-...+.|.|+++..+.+.
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~~~~~mi~P~s~~~~~~~ 44 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKIDNSGMIAPFSSKSFPLP 44 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEECCCETEE-TTEEEEEETS
T ss_pred CEEECCCCcEEEEEeeeecccccccccCCceEECCCCceEEecc
Confidence 68999999999986 44443433233344449999998877653
No 87
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=59.59 E-value=24 Score=26.49 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=35.0
Q ss_pred eeeEEEEEEcCCCCeEE-EEEeecCC-----------------CcEEEeCC--ceeeCCCCEEEEEEEecc
Q 026107 24 QISCSLQLSNKTDNYVA-FKVKTTNP-----------------KKYCVRPN--TGVVLPRSTCDVIVTMQS 74 (243)
Q Consensus 24 ~~~~~l~L~N~s~~~Va-FKVKTT~p-----------------~~Y~VrP~--~GiI~P~~s~~V~Itlq~ 74 (243)
-....|+|+|.++.++. ++|.=+-| ..|.|+|. -+.|+||+++.+-+....
T Consensus 14 Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~Gf~~~~ 84 (101)
T PF00553_consen 14 GFQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFGFQASG 84 (101)
T ss_dssp EEEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEEEEEEE
T ss_pred CeEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEEEEEeC
Confidence 34567899998887752 44433322 56888876 379999999887766544
No 88
>PRK14127 cell division protein GpsB; Provisional
Probab=59.01 E-value=32 Score=26.71 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 179 STEARALISKLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
|++.......|.+|+..|.+++..|++++..++.+
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555556666666666677777666655553
No 89
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=58.81 E-value=23 Score=29.05 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=9.5
Q ss_pred cccchHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKN 194 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~ 194 (243)
|++++.++..++..|+.|++
T Consensus 84 L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444455554444444443
No 90
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=58.12 E-value=11 Score=24.31 Aligned_cols=20 Identities=20% Similarity=0.556 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhccC
Q 026107 224 IYVVIVGFIGIILGYLMKKI 243 (243)
Q Consensus 224 ~~v~~v~ll~~llg~~~~~~ 243 (243)
.+++.+++.+++.+||.+|.
T Consensus 18 vI~~~igm~~~~~~~F~~k~ 37 (42)
T PF11346_consen 18 VIVFTIGMGVFFIRYFIRKM 37 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45577888899999998873
No 91
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=57.03 E-value=39 Score=22.37 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=23.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQE 206 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e 206 (243)
...++...+..|..+...|.+++..|+.|
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677788888888888888888888765
No 92
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=56.98 E-value=27 Score=27.58 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=13.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
+.+.....++..|++|...+.++++.+.+|+.
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv 54 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAERDELREEIV 54 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333
No 93
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=56.69 E-value=24 Score=31.59 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELLRRQA 214 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~~ 214 (243)
+..|....+.-|+.|+..+++++..|++|+..+|+..
T Consensus 216 ~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 216 KEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677788899999999999999999999888743
No 94
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.67 E-value=12 Score=26.86 Aligned_cols=18 Identities=22% Similarity=0.626 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 026107 224 IYVVIVGFIGIILGYLMK 241 (243)
Q Consensus 224 ~~v~~v~ll~~llg~~~~ 241 (243)
+.+.+..|+|+++|||+.
T Consensus 8 l~ivl~ll~G~~~G~fia 25 (71)
T COG3763 8 LLIVLALLAGLIGGFFIA 25 (71)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444556777888764
No 95
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=56.33 E-value=50 Score=22.59 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 182 ARALISKLTEEKNSVIQINNKLQQE 206 (243)
Q Consensus 182 ~~~~i~~L~~e~~~~~~q~~~l~~e 206 (243)
+...|.+|..+.+.++.+....++|
T Consensus 15 L~~kvdqLs~dv~~lr~~v~~ak~E 39 (56)
T PF04728_consen 15 LNSKVDQLSSDVNALRADVQAAKEE 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 96
>PRK00736 hypothetical protein; Provisional
Probab=55.78 E-value=25 Score=24.83 Aligned_cols=40 Identities=15% Similarity=0.246 Sum_probs=25.3
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 173 ~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
.+|+.+++-....|..|.+....-.++...|+.++..|..
T Consensus 8 ~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~ 47 (68)
T PRK00736 8 TELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTE 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677666677777777666555566666666665543
No 97
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=54.91 E-value=28 Score=24.48 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=26.1
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
+|+.+++-....|..|.+....-.++...|+.++..|+.+
T Consensus 8 ~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~r 47 (69)
T PF04102_consen 8 ELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRER 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666677777776666666666666666666554
No 98
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=54.85 E-value=36 Score=23.48 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 026107 184 ALISKLTEEKNSVIQINNKLQQELELLRRQANR 216 (243)
Q Consensus 184 ~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~~~~ 216 (243)
.++.-|++....+..+|..|+.|-..||+..++
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~p 46 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNASP 46 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 456678888888888888888888888876544
No 99
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=54.57 E-value=30 Score=28.54 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 180 TEARALISKLTEEKNSVIQINNKLQQ 205 (243)
Q Consensus 180 ~e~~~~i~~L~~e~~~~~~q~~~l~~ 205 (243)
+.....|.+.++|.....++.+.|++
T Consensus 69 ~~~~~~i~~Y~~~~~~~~~e~~~l~~ 94 (157)
T PF14235_consen 69 AAYQKKIARYKKEKARYKSEAEELEA 94 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666655555555543
No 100
>PRK00295 hypothetical protein; Provisional
Probab=54.17 E-value=33 Score=24.18 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=22.3
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
+|+.+++-....|..|.+......++...|+.++..|+.
T Consensus 9 ~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 9 ELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666555555555555555554443
No 101
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=53.69 E-value=17 Score=24.90 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 184 ALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 184 ~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
+++..|+++...+..+|..|+.++..|+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~ 53 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLK 53 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555444444
No 102
>smart00637 CBD_II CBD_II domain.
Probab=53.65 E-value=63 Score=23.50 Aligned_cols=48 Identities=8% Similarity=0.199 Sum_probs=30.9
Q ss_pred eeEEEEEEcCCCCeE-----EEEEee-------------cCCCcEEEeCC--ceeeCCCCEEEEEEEe
Q 026107 25 ISCSLQLSNKTDNYV-----AFKVKT-------------TNPKKYCVRPN--TGVVLPRSTCDVIVTM 72 (243)
Q Consensus 25 ~~~~l~L~N~s~~~V-----aFKVKT-------------T~p~~Y~VrP~--~GiI~P~~s~~V~Itl 72 (243)
....|+|+|+++.++ .|.+-- .....|.++|. .+.|.||+++.+-+..
T Consensus 8 ~~~~v~vtN~~~~~~~~W~v~~~~~~~~~i~~~Wn~~~~~~g~~~~~~~~~wn~~i~~G~s~~~gf~~ 75 (92)
T smart00637 8 FTANVTVTNTGSSAINGWTVTFDLPGGQTVTNSWNATVSQSGGHVTATNASWNGTIAPGGSVSFGFQG 75 (92)
T ss_pred EEEEEEEEeCCCCcccCeEEEEEcCCCcEEeeeEEEEEEecCCEEEEecCccccccCCCCEEEEEEEe
Confidence 356788888766443 333311 02336999875 4899999998876655
No 103
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=53.14 E-value=21 Score=28.03 Aligned_cols=31 Identities=32% Similarity=0.390 Sum_probs=24.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQEL 207 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~ 207 (243)
.........|..|+.|++.+.+||++|++|+
T Consensus 89 ~s~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 89 SSHLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3334455668889999999999999998875
No 104
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=52.92 E-value=1.1e+02 Score=23.92 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=22.0
Q ss_pred ccCCCeeeEEEEEEcCCCCeEEEEEe
Q 026107 19 FELRKQISCSLQLSNKTDNYVAFKVK 44 (243)
Q Consensus 19 ~~~~~~~~~~l~L~N~s~~~VaFKVK 44 (243)
...+....-.++|+|.+++.+.|+|.
T Consensus 23 ~~P~q~~~l~v~i~N~s~~~~tv~v~ 48 (121)
T PF06030_consen 23 VKPGQKQTLEVRITNNSDKEITVKVS 48 (121)
T ss_pred eCCCCEEEEEEEEEeCCCCCEEEEEE
Confidence 34566778899999999999999986
No 105
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=52.70 E-value=21 Score=33.14 Aligned_cols=12 Identities=0% Similarity=0.097 Sum_probs=6.5
Q ss_pred eeEEEeEEEEEC
Q 026107 117 VEECKLRVLYVA 128 (243)
Q Consensus 117 i~e~kL~v~~~~ 128 (243)
|+.+.++|.+..
T Consensus 6 ~~~~~~~~~~~~ 17 (420)
T PF07407_consen 6 IQMKNMKCTLKV 17 (420)
T ss_pred eecccceeEEEe
Confidence 444556666553
No 106
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=52.63 E-value=17 Score=30.19 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=25.6
Q ss_pred EEEeecCCCcEEEeCCcee--eCCCCEEEEEEEecc
Q 026107 41 FKVKTTNPKKYCVRPNTGV--VLPRSTCDVIVTMQS 74 (243)
Q Consensus 41 FKVKTT~p~~Y~VrP~~Gi--I~P~~s~~V~Itlq~ 74 (243)
|+|.-=+-+.|++.|.-|+ |.||+++.|.+.-..
T Consensus 69 f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~~ 104 (164)
T PF03173_consen 69 FKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGEY 104 (164)
T ss_dssp EEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEES
T ss_pred eEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEccc
Confidence 7777778889999999997 899999999987543
No 107
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=52.28 E-value=26 Score=24.71 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=22.3
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 173 ~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
.+|+..-..+.+++..+..|++.+.+.|...++.++
T Consensus 17 ~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 17 ERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666776666666666655555
No 108
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=52.06 E-value=35 Score=23.29 Aligned_cols=35 Identities=11% Similarity=0.251 Sum_probs=26.8
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQEL 207 (243)
Q Consensus 173 ~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~ 207 (243)
++++.++..+...+..++.|...+..+.+.+++-.
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888888888888888776543
No 109
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=52.06 E-value=74 Score=23.10 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=14.1
Q ss_pred eeEEEEEEcCCCCeEEEEEee
Q 026107 25 ISCSLQLSNKTDNYVAFKVKT 45 (243)
Q Consensus 25 ~~~~l~L~N~s~~~VaFKVKT 45 (243)
+.-.|+|+|+++++|-+..-|
T Consensus 2 v~~~l~v~N~s~~~v~l~f~s 22 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPS 22 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESS
T ss_pred EEEEEEEEeCCCCeEEEEeCC
Confidence 456788889888888877654
No 110
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=51.63 E-value=21 Score=26.25 Aligned_cols=38 Identities=26% Similarity=0.239 Sum_probs=26.3
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQELELL 210 (243)
Q Consensus 173 ~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l 210 (243)
-+|+..|..+.+.|...++|...|.+||+-|++=...|
T Consensus 26 ~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 26 LELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777777777777655433
No 111
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=51.02 E-value=32 Score=29.97 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=18.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
++++.+...+...+|++|..+...+.++++.+...|++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~K 186 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKK 186 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555444444444444444444
No 112
>PRK00523 hypothetical protein; Provisional
Probab=50.68 E-value=14 Score=26.60 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=17.9
Q ss_pred ccHHHHHHHHHHHHHHHHHhcc
Q 026107 221 LPFIYVVIVGFIGIILGYLMKK 242 (243)
Q Consensus 221 ~~~~~v~~v~ll~~llg~~~~~ 242 (243)
.-+++++++.++++++|.+.+-
T Consensus 2 ~~~~l~I~l~i~~li~G~~~Gf 23 (72)
T PRK00523 2 LAIGLALGLGIPLLIVGGIIGY 23 (72)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999988763
No 113
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=50.04 E-value=1e+02 Score=29.69 Aligned_cols=52 Identities=13% Similarity=0.154 Sum_probs=38.5
Q ss_pred eeeEEEEEEcCCCCeEEEEEeecCCCcEEEe-C-CceeeCCCCEEEEEEEeccC
Q 026107 24 QISCSLQLSNKTDNYVAFKVKTTNPKKYCVR-P-NTGVVLPRSTCDVIVTMQSQ 75 (243)
Q Consensus 24 ~~~~~l~L~N~s~~~VaFKVKTT~p~~Y~Vr-P-~~GiI~P~~s~~V~Itlq~~ 75 (243)
.-..+++|.|.+.++..|.++........+. + +.=.|+||+..++.|++...
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTP 400 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEec
Confidence 4568999999999988888887654443333 2 34489999999988887654
No 114
>PRK04406 hypothetical protein; Provisional
Probab=49.78 E-value=41 Score=24.22 Aligned_cols=41 Identities=10% Similarity=0.097 Sum_probs=27.5
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 172 QYEPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 172 ~~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
..+|+.+++=....|..|.+......++...|+.++..|+.
T Consensus 13 i~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 13 INDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677767777777777766666666777777666654
No 115
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=49.62 E-value=9.8 Score=35.97 Aligned_cols=24 Identities=25% Similarity=0.660 Sum_probs=19.1
Q ss_pred CCccHHHHHHHH-HHHHHHHHHhcc
Q 026107 219 SGLPFIYVVIVG-FIGIILGYLMKK 242 (243)
Q Consensus 219 ~g~~~~~v~~v~-ll~~llg~~~~~ 242 (243)
.|.++..|++|+ |++||.-||+-|
T Consensus 370 aGIsvavvvvVgglvGfLcWwf~cr 394 (397)
T PF03302_consen 370 AGISVAVVVVVGGLVGFLCWWFICR 394 (397)
T ss_pred eeeeehhHHHHHHHHHHHhhheeec
Confidence 688888776655 999999999854
No 116
>PRK04325 hypothetical protein; Provisional
Probab=49.37 E-value=42 Score=24.04 Aligned_cols=41 Identities=24% Similarity=0.141 Sum_probs=27.4
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 172 QYEPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 172 ~~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
..+|+.+++=....|..|.+....-.++...|+.++..|..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777766666666667666665543
No 117
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=49.05 E-value=83 Score=23.34 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=32.5
Q ss_pred EEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEe
Q 026107 9 NIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTM 72 (243)
Q Consensus 9 ~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itl 72 (243)
..+|.++..+. ++ ...|+++|.++....|-+..- .+ ...|.||++..+.++.
T Consensus 31 ~f~P~~i~v~~--G~--~v~l~~~N~~~~~h~~~i~~~-----~~---~~~l~~g~~~~~~f~~ 82 (104)
T PF13473_consen 31 GFSPSTITVKA--GQ--PVTLTFTNNDSRPHEFVIPDL-----GI---SKVLPPGETATVTFTP 82 (104)
T ss_dssp EEES-EEEEET--TC--EEEEEEEE-SSS-EEEEEGGG-----TE---EEEE-TT-EEEEEEEE
T ss_pred eEecCEEEEcC--CC--eEEEEEEECCCCcEEEEECCC-----ce---EEEECCCCEEEEEEcC
Confidence 56777776654 22 346999999988888877761 11 2679999999998854
No 118
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=47.84 E-value=51 Score=24.59 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=16.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
.+.++.+++..|++++..+..+++.++.++.
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554444443
No 119
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=47.65 E-value=51 Score=24.35 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
+..++..++.+++.|.+.+..+|..|+-|..
T Consensus 36 ~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~ 66 (97)
T PF04999_consen 36 QSRQLFYELQQLEKEIDQLQEENERLRLEIA 66 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777777777777765544
No 120
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=47.61 E-value=58 Score=24.24 Aligned_cols=33 Identities=18% Similarity=0.130 Sum_probs=19.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELL 210 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l 210 (243)
++.++.+++.+.++++.....+.+.|+.+...|
T Consensus 2 ~Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l 34 (86)
T PF12958_consen 2 TLEELQAEIEKAEKKLEQAEHKIKQLENRKKKL 34 (86)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666665554443
No 121
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=47.49 E-value=21 Score=35.21 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026107 184 ALISKLTEEKNSVIQINNKLQQELELLRRQA 214 (243)
Q Consensus 184 ~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~~ 214 (243)
.+..-|+.-++++++||+.|+.|-..||++.
T Consensus 302 Ey~~~Le~rLq~ll~Ene~Lk~ENatLk~qL 332 (655)
T KOG4343|consen 302 EYMLGLEARLQALLSENEQLKKENATLKRQL 332 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3455566666677777777777777777654
No 122
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=46.93 E-value=68 Score=23.93 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 182 ARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 182 ~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
-...|..|+.+...+.+++..|+.+++..|.
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777766665443
No 123
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=46.89 E-value=1.1e+02 Score=25.66 Aligned_cols=52 Identities=13% Similarity=0.271 Sum_probs=35.6
Q ss_pred CCeeeEEEEEEcCCCCeEEEEEeecC----CCcEEEeC-----CceeeCCCCEEEEEEEecc
Q 026107 22 RKQISCSLQLSNKTDNYVAFKVKTTN----PKKYCVRP-----NTGVVLPRSTCDVIVTMQS 74 (243)
Q Consensus 22 ~~~~~~~l~L~N~s~~~VaFKVKTT~----p~~Y~VrP-----~~GiI~P~~s~~V~Itlq~ 74 (243)
++.++..++|.|.++. -||.|+=+. ++.|-+-- +...|+||+++.-.+++.|
T Consensus 37 g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p 97 (181)
T PF05753_consen 37 GEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRP 97 (181)
T ss_pred CcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEee
Confidence 6789999999999877 799999887 23443321 1355666666666666654
No 124
>PRK02119 hypothetical protein; Provisional
Probab=46.64 E-value=50 Score=23.62 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=22.6
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 173 ~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
.+|+.+++=....|..|.+....-.++...|+.++..|+.
T Consensus 12 ~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 12 AELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566655566666666555555555556555555543
No 125
>PRK02793 phi X174 lysis protein; Provisional
Probab=46.37 E-value=51 Score=23.49 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=24.3
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 173 ~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
.+|+.+++=....|..|.+......++...|+.++..|..
T Consensus 11 ~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 11 AELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666665555556666666665543
No 126
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=46.11 E-value=52 Score=22.64 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQ 204 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~ 204 (243)
++.+...+-.+|..|..++.+||..|+
T Consensus 27 rY~~vL~~R~~l~~e~~~L~~qN~eLr 53 (60)
T PF14775_consen 27 RYNKVLLDRAALIQEKESLEQQNEELR 53 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666666666666554
No 127
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=45.68 E-value=39 Score=32.80 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=11.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKL 203 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l 203 (243)
++++++.++.+|..|.+.+++||+.|
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L 92 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERL 92 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 128
>COG5547 Small integral membrane protein [Function unknown]
Probab=45.40 E-value=23 Score=24.41 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 026107 223 FIYVVIVGFIGIILGYLMKK 242 (243)
Q Consensus 223 ~~~v~~v~ll~~llg~~~~~ 242 (243)
..+|+++|++|+-+||+.++
T Consensus 32 tilviil~~lGv~iGl~~~r 51 (62)
T COG5547 32 TILVIILILLGVYIGLYKKR 51 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999998765
No 129
>PRK09039 hypothetical protein; Validated
Probab=45.31 E-value=28 Score=32.30 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=14.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 176 QDKSTEARALISKLTEEKNSVIQINNKLQQ 205 (243)
Q Consensus 176 ~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~ 205 (243)
+..++++..+|..|+.|..++++|+..|+.
T Consensus 129 k~~~se~~~~V~~L~~qI~aLr~Qla~le~ 158 (343)
T PRK09039 129 KQVSARALAQVELLNQQIAALRRQLAALEA 158 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555554444433
No 130
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=44.58 E-value=51 Score=23.99 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 188 KLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 188 ~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
.|++|...|.++.++|..|+..++
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555544444433
No 131
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=44.57 E-value=1.3e+02 Score=26.39 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 186 ISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 186 i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
+.+++.|+...+.|.+.++.++..|..
T Consensus 164 ~l~ie~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 164 LLEIERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555444443
No 132
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=44.23 E-value=50 Score=22.58 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=15.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
|++++..+|+.|....+++..+...++.+..
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555444444443
No 133
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=43.93 E-value=55 Score=28.92 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 026107 181 EARALISKLTEEKNSVIQINN---KLQQELELLRR 212 (243)
Q Consensus 181 e~~~~i~~L~~e~~~~~~q~~---~l~~e~~~l~~ 212 (243)
++.++..+|++|...+..++. .+++|..+||+
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333333 33445555554
No 134
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=43.78 E-value=39 Score=33.44 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=33.5
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026107 172 QYEPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRRQA 214 (243)
Q Consensus 172 ~~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~~ 214 (243)
++++++++.-+...+..|.+|...+.+||..|..++..+|++.
T Consensus 150 l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 150 LSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4566677777777888888888889999888888888777643
No 135
>PF06612 DUF1146: Protein of unknown function (DUF1146); InterPro: IPR009526 Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes YwzB from Bacillus subtilis.
Probab=43.35 E-value=29 Score=22.88 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=17.2
Q ss_pred ccHHHHHHHHHHHHHHHHHhcc
Q 026107 221 LPFIYVVIVGFIGIILGYLMKK 242 (243)
Q Consensus 221 ~~~~~v~~v~ll~~llg~~~~~ 242 (243)
-+.+.-+++.++|+.|||+...
T Consensus 24 ~~~q~~ll~vllsIalGylvs~ 45 (48)
T PF06612_consen 24 NVRQARLLIVLLSIALGYLVSS 45 (48)
T ss_pred CchHHHHHHHHHHHHHHHHHHh
Confidence 4566778888899999998764
No 136
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=43.03 E-value=23 Score=31.39 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=24.4
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 172 QYEPQDKSTEARALISKLTEEKNSVIQINNKLQ 204 (243)
Q Consensus 172 ~~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~ 204 (243)
..||++++++..+++..|+.|.+.+...|-+|=
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLY 127 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESLRADNVKLY 127 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777778887777777777763
No 137
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=42.87 E-value=27 Score=32.27 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=18.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
.+.++.++.+.+..|+.+.+...++...|+++..
T Consensus 240 ~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~ 273 (344)
T PF12777_consen 240 KQAELAELEEKLAALQKEYEEAQKEKQELEEEIE 273 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555666655554
No 138
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=42.70 E-value=55 Score=27.39 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 181 EARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 181 e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
+...++.+|++|+.....+.+.|+++.+
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333444443333
No 139
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=41.84 E-value=51 Score=29.27 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=16.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 176 QDKSTEARALISKLTEEKNSVIQINNKL 203 (243)
Q Consensus 176 ~~~~~e~~~~i~~L~~e~~~~~~q~~~l 203 (243)
|+..+|...+|..|.||...|+-+|+.|
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~L 116 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSL 116 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666555555444
No 140
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=41.78 E-value=17 Score=23.98 Aligned_cols=17 Identities=12% Similarity=0.593 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHhc
Q 026107 225 YVVIVGFIGIILGYLMK 241 (243)
Q Consensus 225 ~v~~v~ll~~llg~~~~ 241 (243)
+|++++++++++|-+++
T Consensus 3 ~V~lL~~~~l~iGlmIG 19 (47)
T PF11772_consen 3 LVLLLAILALAIGLMIG 19 (47)
T ss_pred eHHHHHHHHHHHHHHee
Confidence 46666777777666554
No 141
>PRK00846 hypothetical protein; Provisional
Probab=41.75 E-value=54 Score=23.86 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=23.2
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 173 ~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
.+|+.+++=....|..|.+......++...|+.++..|.
T Consensus 16 ~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~ 54 (77)
T PRK00846 16 VELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 54 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666555555666666555444
No 142
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=41.75 E-value=95 Score=23.93 Aligned_cols=17 Identities=24% Similarity=0.254 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026107 223 FIYVVIVGFIGIILGYL 239 (243)
Q Consensus 223 ~~~v~~v~ll~~llg~~ 239 (243)
+..++++++.++-+|.|
T Consensus 95 ~~~~~~~~lp~~a~~lY 111 (117)
T TIGR03142 95 AALVVVLLLPVLALGLY 111 (117)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444443333
No 143
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=41.60 E-value=88 Score=25.14 Aligned_cols=26 Identities=38% Similarity=0.445 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 187 SKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 187 ~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
..|+.++..+.+|.++|++|...+++
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~ 102 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRR 102 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555555555555554443
No 144
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=41.57 E-value=54 Score=25.22 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=27.2
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 173 ~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
.+|++.|.+-.+.+-++..|.+++.-.|++|......|+
T Consensus 29 ~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ 67 (102)
T PF10205_consen 29 AELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQ 67 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777778888888888887777777654444333
No 145
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=41.52 E-value=97 Score=26.52 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026107 180 TEARALISKLTEEKNSVIQINNKLQQELELLRRQA 214 (243)
Q Consensus 180 ~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~~ 214 (243)
.++.++...|..|+..+..|.+.|+.++..|.++.
T Consensus 150 ~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 150 QQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666677777777777777777766666543
No 146
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=41.36 E-value=77 Score=22.44 Aligned_cols=14 Identities=57% Similarity=0.812 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHh
Q 026107 200 NNKLQQELELLRRQ 213 (243)
Q Consensus 200 ~~~l~~e~~~l~~~ 213 (243)
+.+|+.|++.|++.
T Consensus 49 ~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 49 NNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455566555543
No 147
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=41.09 E-value=80 Score=26.28 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=8.6
Q ss_pred CcccchHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEE 192 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e 192 (243)
+|+.+|.+...+|..|+.-
T Consensus 33 eLr~EL~KvEeEI~TLrqv 51 (162)
T PF04201_consen 33 ELRSELAKVEEEIQTLRQV 51 (162)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 148
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=41.07 E-value=32 Score=33.41 Aligned_cols=40 Identities=23% Similarity=0.210 Sum_probs=17.5
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
+|+.+++++..+...+..++..+.++.+.++.|...|+.+
T Consensus 80 ELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 80 QMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4444554444443322233333444444444555555443
No 149
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=40.71 E-value=84 Score=22.24 Aligned_cols=19 Identities=42% Similarity=0.559 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026107 193 KNSVIQINNKLQQELELLR 211 (243)
Q Consensus 193 ~~~~~~q~~~l~~e~~~l~ 211 (243)
...+..++..|++|++..+
T Consensus 49 ~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 49 NNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3344444555555555443
No 150
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=40.16 E-value=1e+02 Score=22.94 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
++.++..++.+|.+|...+..|....+.|..
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvk 54 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVK 54 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666777777776666666555544444
No 151
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=40.01 E-value=55 Score=32.52 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=35.3
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
-|+.+..+.-.+|..|+++++.+.++.+.++.+|.+.+..
T Consensus 367 cLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 367 CLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667888999999999999999999999999999988765
No 152
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=40.00 E-value=32 Score=30.47 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=26.1
Q ss_pred cCCcccchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 026107 172 QYEPQDKSTEARALISKLTEEKN---SVIQINNKLQQELE 208 (243)
Q Consensus 172 ~~~l~~~~~e~~~~i~~L~~e~~---~~~~q~~~l~~e~~ 208 (243)
..++.++..++++++..|+.+.. ++.+||++|++-+.
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566677777777777776665 66788888877555
No 153
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=39.97 E-value=47 Score=26.85 Aligned_cols=40 Identities=23% Similarity=0.239 Sum_probs=28.0
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 173 ~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
+++++++.++.+....+..|..++.+.+..|..+++.+..
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~ 56 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEE 56 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777777665544
No 154
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=39.81 E-value=68 Score=28.49 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=14.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKL 203 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l 203 (243)
|..+++.+.++|.+|+.+...+..|.+++
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44455555555555555544444444443
No 155
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=39.23 E-value=7.1 Score=31.40 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=1.7
Q ss_pred CCccHHHHHHHHHHHHHHHHHhcc
Q 026107 219 SGLPFIYVVIVGFIGIILGYLMKK 242 (243)
Q Consensus 219 ~g~~~~~v~~v~ll~~llg~~~~~ 242 (243)
.-+++.-++++++++++=-|++++
T Consensus 157 ~~~si~~~~vli~~~~~Qv~~lk~ 180 (183)
T PF01105_consen 157 MWWSIIQIVVLILVSVWQVYYLKK 180 (183)
T ss_dssp ---------------------HHH
T ss_pred EhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666654
No 156
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=39.19 E-value=89 Score=27.21 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=24.3
Q ss_pred ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 026107 176 QDKSTEARALISKLTE-EKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 176 ~~~~~e~~~~i~~L~~-e~~~~~~q~~~l~~e~~~l~~ 212 (243)
+..++....++..+++ |-..++.||++|+.|++.+|.
T Consensus 100 ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks 137 (220)
T KOG3156|consen 100 KVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKS 137 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666665543 556778888888888876664
No 157
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=39.17 E-value=89 Score=26.00 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026107 188 KLTEEKNSVIQINNKLQQELEL 209 (243)
Q Consensus 188 ~L~~e~~~~~~q~~~l~~e~~~ 209 (243)
+|++|...+.++|+.|+.|+..
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~ 129 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEK 129 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 158
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=39.14 E-value=78 Score=23.02 Aligned_cols=20 Identities=5% Similarity=0.300 Sum_probs=9.2
Q ss_pred ccHHHHHHHHHHHHHHHHHh
Q 026107 221 LPFIYVVIVGFIGIILGYLM 240 (243)
Q Consensus 221 ~~~~~v~~v~ll~~llg~~~ 240 (243)
+-+.+++++|||.-+-|+|+
T Consensus 51 v~l~l~ail~lL~a~Ya~fy 70 (79)
T PF15168_consen 51 VALVLAAILVLLLAFYAFFY 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 159
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=38.24 E-value=32 Score=24.80 Aligned_cols=19 Identities=26% Similarity=0.609 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 026107 223 FIYVVIVGFIGIILGYLMK 241 (243)
Q Consensus 223 ~~~v~~v~ll~~llg~~~~ 241 (243)
-.++++.+++||++||+..
T Consensus 14 ~~il~~~~iisfi~Gy~~q 32 (76)
T PF06645_consen 14 QYILIISAIISFIVGYITQ 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456777889999999864
No 160
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=38.23 E-value=48 Score=25.69 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 179 STEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
+..+...+..+.++...+.+..+++.+++..+++
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444455555543
No 161
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=38.22 E-value=38 Score=23.13 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026107 189 LTEEKNSVIQINNKLQQELELL 210 (243)
Q Consensus 189 L~~e~~~~~~q~~~l~~e~~~l 210 (243)
++.+..++.++.+++++|++.+
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444555555554443
No 162
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=37.79 E-value=37 Score=30.58 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=14.3
Q ss_pred cccchHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKN----SVIQINNKLQQE 206 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~----~~~~q~~~l~~e 206 (243)
++++.+++..++.+|+.+.. .+.+||++|++-
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~L 106 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEILTQNLKQENVRLREL 106 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555444433222 244555555543
No 163
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=37.76 E-value=18 Score=27.68 Aligned_cols=21 Identities=14% Similarity=0.434 Sum_probs=13.0
Q ss_pred ccHHHHHHHHHHHHHHHHHhc
Q 026107 221 LPFIYVVIVGFIGIILGYLMK 241 (243)
Q Consensus 221 ~~~~~v~~v~ll~~llg~~~~ 241 (243)
=|++|.+=.+|=+.+|||+|+
T Consensus 67 ESLLFaLQAAiGAgiIgY~lG 87 (100)
T PRK02898 67 ESLLFALQAALGAGIIGYILG 87 (100)
T ss_pred HHHHHHHHHHHhhhhhheeee
Confidence 346666666666666666665
No 164
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=37.67 E-value=71 Score=26.53 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 026107 225 YVVIVGFIGIILGYLM 240 (243)
Q Consensus 225 ~v~~v~ll~~llg~~~ 240 (243)
+-++++++++++||+.
T Consensus 159 ~g~i~~~~a~~la~~r 174 (177)
T PF07798_consen 159 VGVIFGCVALVLAILR 174 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3355667778888763
No 165
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=37.64 E-value=59 Score=23.18 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=27.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQELELL 210 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l 210 (243)
........++.+++.+.+.+..+|..|+.|...|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788889999999989999999998877744
No 166
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=37.46 E-value=44 Score=29.47 Aligned_cols=9 Identities=11% Similarity=0.368 Sum_probs=5.2
Q ss_pred CCEEEEEEE
Q 026107 63 RSTCDVIVT 71 (243)
Q Consensus 63 ~~s~~V~It 71 (243)
|+.+.|+|+
T Consensus 32 G~eYnITis 40 (290)
T COG4026 32 GSEYNITIS 40 (290)
T ss_pred cccceeEEE
Confidence 555566655
No 167
>PF13205 Big_5: Bacterial Ig-like domain
Probab=36.97 E-value=1.6e+02 Score=21.29 Aligned_cols=56 Identities=14% Similarity=0.296 Sum_probs=36.7
Q ss_pred eeeecccCCC-eeeEEEEEEc--CCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEe
Q 026107 14 ELQFPFELRK-QISCSLQLSN--KTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTM 72 (243)
Q Consensus 14 eL~F~~~~~~-~~~~~l~L~N--~s~~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itl 72 (243)
.|.|..+.+. .....+.+.+ ....+|.+. ....+.+.+.|. +-+.+|..+.|.|.-
T Consensus 26 ~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~--~~~~~~~~i~p~-~~L~~~t~Y~v~i~~ 84 (107)
T PF13205_consen 26 VITFSEPVDPASVSSAITITDSNGSGVPVSFS--SWDGNTLTITPS-QPLKPGTTYTVTIDS 84 (107)
T ss_pred EEEECCceecCccceEEEEEecCCCcEEEEEE--EccCCEEEEEEC-CcCCCCCEEEEEECC
Confidence 4777776543 3445556643 444555555 444588999998 557889999998843
No 168
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=36.82 E-value=70 Score=29.29 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhc
Q 026107 227 VIVGFIGIILGYLMK 241 (243)
Q Consensus 227 ~~v~ll~~llg~~~~ 241 (243)
++.+-+++||..+.+
T Consensus 173 AA~Gq~~LLL~~la~ 187 (314)
T PF04111_consen 173 AAWGQTALLLQTLAK 187 (314)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666655543
No 169
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=36.53 E-value=87 Score=24.23 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=18.0
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQE 206 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e 206 (243)
.+++++..+..++.+|+.+.....++.+.|++|
T Consensus 84 ~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 84 QLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555555555544
No 170
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=36.52 E-value=43 Score=30.66 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=24.4
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 172 QYEPQDKSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 172 ~~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
+.++++|+.+|+-.-+.|-.|+..+.-|...|++++.
T Consensus 86 l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~le 122 (302)
T PF09738_consen 86 LAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLE 122 (302)
T ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777767666665444
No 171
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=36.40 E-value=3e+02 Score=24.19 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=59.6
Q ss_pred CceEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEee---cCC---------------CcEEEeCCceeeCCCCEEE
Q 026107 6 ELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKT---TNP---------------KKYCVRPNTGVVLPRSTCD 67 (243)
Q Consensus 6 ~ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKT---T~p---------------~~Y~VrP~~GiI~P~~s~~ 67 (243)
--|.|.|-.+.+... .+..+.++|+|.++.+..++|.. ++| ..-.+.|..-.|.||++-.
T Consensus 16 a~l~V~Pi~~~i~a~--~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q~ 93 (234)
T PRK15308 16 ANMLVYPMAAEIGAG--REEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTRT 93 (234)
T ss_pred ceEEEEEeEEEecCC--CcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeEE
Confidence 457788977777542 24568999999999988877642 232 2367889999999999999
Q ss_pred EEEEeccCCCCCCCCCCCceEEEEEEEcCC
Q 026107 68 VIVTMQSQKEAPPDMQCKDKFLLQGVVASP 97 (243)
Q Consensus 68 V~Itlq~~~~~p~~~~~kDKFlVqs~~v~~ 97 (243)
|.+..... ++ ...-|.|...++++
T Consensus 94 IRli~lg~----~~--kE~~YRl~~~pvp~ 117 (234)
T PRK15308 94 VRVISLQA----PE--REEAWRVYFEPVAE 117 (234)
T ss_pred EEEEEcCC----CC--cEEEEEEEEEecCC
Confidence 99886542 12 23446666677764
No 172
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=36.26 E-value=1.2e+02 Score=20.95 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 026107 196 VIQINNKLQQELELLR 211 (243)
Q Consensus 196 ~~~q~~~l~~e~~~l~ 211 (243)
+.++.+.|+++++.+|
T Consensus 44 L~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 44 LEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3333444444444433
No 173
>PF11859 DUF3379: Protein of unknown function (DUF3379); InterPro: IPR021806 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 234 to 251 amino acids in length.
Probab=35.93 E-value=1.4e+02 Score=26.29 Aligned_cols=23 Identities=4% Similarity=0.169 Sum_probs=17.7
Q ss_pred CCccHHHHHHHHHHHHHHHHHhc
Q 026107 219 SGLPFIYVVIVGFIGIILGYLMK 241 (243)
Q Consensus 219 ~g~~~~~v~~v~ll~~llg~~~~ 241 (243)
..|.-+++++.+=++|++|.+++
T Consensus 75 ~~f~r~~lAlAASVAFv~Gl~~~ 97 (232)
T PF11859_consen 75 PRFARWHLALAASVAFVVGLSFG 97 (232)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888888887775
No 174
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=35.89 E-value=2e+02 Score=23.83 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELLRRQA 214 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~~ 214 (243)
+.++.+-++.+++++.+ ++.+++++|...+.++.
T Consensus 30 km~~i~P~~~~i~~k~k---~~~~~~~~e~~~l~k~~ 63 (181)
T TIGR03592 30 KMQELQPKLKEIQEKYK---DDPQKLQQEMMKLYKEE 63 (181)
T ss_pred HHHHhhHHHHHHHHHHH---hhHHHHHHHHHHHHHHh
Confidence 45556666666666543 23445666766666543
No 175
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=35.54 E-value=95 Score=23.95 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 180 TEARALISKLTEEKNSVIQINNKLQQELEL 209 (243)
Q Consensus 180 ~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~ 209 (243)
.++.+++.+|+.|+..+..|++-|++...-
T Consensus 74 ~~~~~ei~~L~~el~~L~~E~diLKKa~~~ 103 (121)
T PRK09413 74 AAAMKQIKELQRLLGKKTMENELLKEAVEY 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666655543
No 176
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=35.30 E-value=1.1e+02 Score=23.93 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026107 184 ALISKLTEEKNSVIQINNKL 203 (243)
Q Consensus 184 ~~i~~L~~e~~~~~~q~~~l 203 (243)
.+|..|.+..+.+.+||.-|
T Consensus 74 ~qI~eL~er~~~Le~EN~lL 93 (123)
T KOG4797|consen 74 EQIRELEERNSALERENSLL 93 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444333
No 177
>PF08078 PsaX: PsaX family; InterPro: IPR012986 This family consists of the PsaX family of photosystem I (PSI) protein subunits. PSI is a large multi-subunit pigment protein complex embedded in the thylakoid membranes of green plants and cyanobacteria. PsaX is one of the 12 protein subunits found in PSI and these subunits are arranged as monomers or trimers within the membrane as shown by the structure of the trimeric complex from Synechococcus elongatus [].; PDB: 3PCQ_X 1JB0_X.
Probab=35.03 E-value=60 Score=20.05 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhccC
Q 026107 224 IYVVIVGFIGIILGYLMKKI 243 (243)
Q Consensus 224 ~~v~~v~ll~~llg~~~~~~ 243 (243)
|.+++++|=-++.||+|+-|
T Consensus 18 Wa~llLaINflVAayYFhii 37 (37)
T PF08078_consen 18 WALLLLAINFLVAAYYFHII 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHHHHHheeC
Confidence 66777777778888888743
No 178
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=34.99 E-value=1.3e+02 Score=19.53 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=18.0
Q ss_pred chHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLT-------EEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 178 ~~~e~~~~i~~L~-------~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
++.++..+|..++ .+...+.+++-.|++++..+.+
T Consensus 7 ~h~~Ld~~I~~~e~~~~~~d~~l~~LKk~kL~LKDei~~ll~ 48 (49)
T PF04325_consen 7 EHHELDKEIHRLEKRPEPDDEELERLKKEKLRLKDEIYRLLR 48 (49)
T ss_dssp HHHHHHHHHHHHHTT--S-HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444444544443 2334555666666777665543
No 179
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=34.83 E-value=61 Score=19.09 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 026107 223 FIYVVIVGFIGIILGYLMK 241 (243)
Q Consensus 223 ~~~v~~v~ll~~llg~~~~ 241 (243)
.-.++...|+-+|+||+..
T Consensus 3 ~~vi~g~llv~lLl~YLvY 21 (29)
T PRK14750 3 FSIVCGALLVLLLLGYLVY 21 (29)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456667777788888754
No 180
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=34.49 E-value=1.1e+02 Score=22.61 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=34.6
Q ss_pred CCceEEeCCeeeecccCCCeeeEEEEEEcCCC--CeEEEEEeecCCCcEEEeC----CceeeCCCCEEEEEEEe
Q 026107 5 GELLNIEPQELQFPFELRKQISCSLQLSNKTD--NYVAFKVKTTNPKKYCVRP----NTGVVLPRSTCDVIVTM 72 (243)
Q Consensus 5 ~~ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~--~~VaFKVKTT~p~~Y~VrP----~~GiI~P~~s~~V~Itl 72 (243)
..-+..+|.+|.+..- ..++++|.+. +.+.|-=.......-...+ +.+.+.||++.++.++-
T Consensus 9 ~g~~~F~P~~i~v~~G------~~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~ 76 (99)
T TIGR02656 9 KGALVFEPAKISIAAG------DTVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST 76 (99)
T ss_pred CCceeEeCCEEEECCC------CEEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC
Confidence 4557889998888652 1367888754 4445421111111100111 34678999998886653
No 181
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=34.46 E-value=2.1e+02 Score=23.84 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=37.2
Q ss_pred EEEEEEcCCCCeEEEEEeecCCCcEEEeCC-ceeeCCCC-EEEEEEEeccCCCCCCCCCCCceEEEE
Q 026107 27 CSLQLSNKTDNYVAFKVKTTNPKKYCVRPN-TGVVLPRS-TCDVIVTMQSQKEAPPDMQCKDKFLLQ 91 (243)
Q Consensus 27 ~~l~L~N~s~~~VaFKVKTT~p~~Y~VrP~-~GiI~P~~-s~~V~Itlq~~~~~p~~~~~kDKFlVq 91 (243)
-.|.|+........|+|..+ ..|.|+ .+++.+.. ..-.-||+-|+.... ...+++|+|+
T Consensus 113 D~I~v~~~~g~~~~Y~V~~~----~iV~~~d~~v~~~~~~~~LtLiTC~Pf~~~~--~~~~~R~vV~ 173 (174)
T TIGR03784 113 DVIRLQTPDGQWQSYQVTAT----RVVDESETGLDLPADDSQLVLITCYPFDALG--SGGPLRYVVE 173 (174)
T ss_pred CEEEEEECCCeEEEEEEeEE----EEECCccceeccCCCCCEEEEEeCCCCCCCC--CCCCcEEEEE
Confidence 46777777777778888765 456665 45555543 344457787764211 1367899886
No 182
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=34.03 E-value=76 Score=24.69 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=30.5
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQELEL 209 (243)
Q Consensus 173 ~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~ 209 (243)
+.+-.++..+.+.+..|-+|...++=||.+|++.+..
T Consensus 18 ~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 18 GVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3445567788888999999999999999999987774
No 183
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=34.00 E-value=29 Score=22.89 Aligned_cols=22 Identities=9% Similarity=0.333 Sum_probs=9.5
Q ss_pred ccHHHHHHHHHHHHHHHHHhcc
Q 026107 221 LPFIYVVIVGFIGIILGYLMKK 242 (243)
Q Consensus 221 ~~~~~v~~v~ll~~llg~~~~~ 242 (243)
|-+.+.++++.++.++.++.+.
T Consensus 13 F~~lIC~Fl~~~~~F~~F~~Kq 34 (54)
T PF06716_consen 13 FGFLICLFLFCLVVFIWFVYKQ 34 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 184
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=33.75 E-value=1.2e+02 Score=23.67 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 185 LISKLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 185 ~i~~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
++.-|+++...+...|..|++|...||.-
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666666666666667776666653
No 185
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=33.59 E-value=87 Score=24.19 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 186 ISKLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 186 i~~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
+..+++|+..|.+++..|+.|.+-|++.
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa 100 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEA 100 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777777764
No 186
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=33.51 E-value=96 Score=28.39 Aligned_cols=15 Identities=7% Similarity=0.177 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 026107 225 YVVIVGFIGIILGYL 239 (243)
Q Consensus 225 ~v~~v~ll~~llg~~ 239 (243)
.++++..++=-+||=
T Consensus 178 ~~LLL~~la~~l~~~ 192 (314)
T PF04111_consen 178 TALLLQTLAKKLNFK 192 (314)
T ss_dssp HHHHHHHHHHHCT--
T ss_pred HHHHHHHHHHHhCCC
Confidence 445555554444443
No 187
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=33.48 E-value=1.1e+02 Score=22.78 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=10.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQI 199 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q 199 (243)
+.+++.++...|+.|......|
T Consensus 31 ~~~kL~~en~qlk~Ek~~~~~q 52 (87)
T PF10883_consen 31 QNAKLQKENEQLKTEKAVAETQ 52 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554443333
No 188
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=33.20 E-value=1.1e+02 Score=22.79 Aligned_cols=31 Identities=16% Similarity=0.105 Sum_probs=17.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQEL 207 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~ 207 (243)
.+++++..++..|.+|...|..+...-+.|.
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek 79 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTEREEK 79 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655555544433
No 189
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=32.75 E-value=1.6e+02 Score=20.82 Aligned_cols=54 Identities=9% Similarity=0.061 Sum_probs=34.0
Q ss_pred CCeeeEEEEEEcCCCC-eEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEeccC
Q 026107 22 RKQISCSLQLSNKTDN-YVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (243)
Q Consensus 22 ~~~~~~~l~L~N~s~~-~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~ 75 (243)
++...-.++|+|.+.. .=.|+|+-...+...-.-..+-|.||++..+.+++.+.
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEECCceeccEEECCcCCCcEEEEEEEEEeC
Confidence 4577889999999764 34566654333333333333788999999999988764
No 190
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=32.65 E-value=1.1e+02 Score=25.49 Aligned_cols=12 Identities=50% Similarity=0.830 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 026107 228 IVGFIGIILGYL 239 (243)
Q Consensus 228 ~v~ll~~llg~~ 239 (243)
+++..++++||+
T Consensus 128 fv~~~~~i~~y~ 139 (180)
T PF04678_consen 128 FVGYGTSILGYA 139 (180)
T ss_pred HHhHHHHHHHHH
Confidence 344444444444
No 191
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=32.21 E-value=1e+02 Score=27.09 Aligned_cols=13 Identities=46% Similarity=0.693 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 026107 186 ISKLTEEKNSVIQ 198 (243)
Q Consensus 186 i~~L~~e~~~~~~ 198 (243)
+.++++|..+.++
T Consensus 122 i~k~r~e~~~ml~ 134 (230)
T PF03904_consen 122 IKKVREENKSMLQ 134 (230)
T ss_pred HHHHHHHHHHHHH
Confidence 3333443333333
No 192
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=32.16 E-value=1.2e+02 Score=22.89 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 183 RALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 183 ~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
..++..|+...+.+..+|..|.+++..+|+
T Consensus 79 ~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 79 KKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445566677777777778888777776654
No 193
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=31.66 E-value=1.1e+02 Score=24.10 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=27.1
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
.++.+...+...+.+|+++...+.++.+.+++.+..+.+
T Consensus 98 ~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 98 ILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777777777777777776666554
No 194
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=31.53 E-value=1.1e+02 Score=23.71 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=18.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
.+.+...++..+|..++..+.+|.+.|++..+
T Consensus 57 ~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~ 88 (117)
T COG2919 57 RQIAAQQAELEKLSARNTALEAEIKDLKDGRD 88 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 34445555666666666666666666665533
No 195
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.46 E-value=2.2e+02 Score=24.65 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHh
Q 026107 186 ISKLTEEKNSVIQINNKLQQELELLRRQANRSSSGLPFIYVVIVGFIGIILGYLM 240 (243)
Q Consensus 186 i~~L~~e~~~~~~q~~~l~~e~~~l~~~~~~~~~g~~~~~v~~v~ll~~llg~~~ 240 (243)
+..|..+..+.++|-+-.|..-++.|....+-+.-+-.|.|+=+.+|.+.-+|=|
T Consensus 148 v~~L~~~~~~IrkEQ~~~R~RE~~FR~tSES~NsRvm~Wsv~Q~vvL~~tc~wQm 202 (215)
T KOG1690|consen 148 VRQLNSRLESIRKEQNLQREREETFRDTSESANSRVMWWSVAQLVVLLVTCIWQM 202 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcceeeehhHHHHHHHHHHHHHHH
Confidence 3334444433333332222222344543323333344455544444444444433
No 196
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=31.20 E-value=92 Score=31.23 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 179 STEARALISKLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
..+++.+|.+|+.|+..|++|+.++..+|..++++
T Consensus 513 I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqq 547 (604)
T KOG3863|consen 513 ILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQ 547 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888888888887776666655554
No 197
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=31.05 E-value=1.7e+02 Score=21.26 Aligned_cols=37 Identities=27% Similarity=0.351 Sum_probs=26.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 176 ~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
++++.++...+..|+.++.....-|++|+++...++.
T Consensus 18 ~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 18 QEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777888877788888888877775554
No 198
>PHA02414 hypothetical protein
Probab=31.03 E-value=2.4e+02 Score=21.55 Aligned_cols=48 Identities=13% Similarity=0.292 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCC-ccHHHHHHHHHHHHHHHHHhccC
Q 026107 196 VIQINNKLQQELELLRRQANRSSSG-LPFIYVVIVGFIGIILGYLMKKI 243 (243)
Q Consensus 196 ~~~q~~~l~~e~~~l~~~~~~~~~g-~~~~~v~~v~ll~~llg~~~~~~ 243 (243)
+.=|..+|.+..+.|+........+ =-..==+++.+||.++.|.|.++
T Consensus 62 i~yQi~~Lee~i~aL~~~n~ked~~KkD~vEkVfmivLGAvvtyVFs~f 110 (111)
T PHA02414 62 IYYQIERLEEKISALAESNKKEDTEKKDTVEKVFMIVLGAVVTYVFSKF 110 (111)
T ss_pred HHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555665432111111 11112234455667777777653
No 199
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.87 E-value=1.2e+02 Score=26.50 Aligned_cols=42 Identities=26% Similarity=0.248 Sum_probs=31.8
Q ss_pred EEEEEEcCCCCeEEEE--EeecCCCcEEEeCCceeeCCCCEEEEEE
Q 026107 27 CSLQLSNKTDNYVAFK--VKTTNPKKYCVRPNTGVVLPRSTCDVIV 70 (243)
Q Consensus 27 ~~l~L~N~s~~~VaFK--VKTT~p~~Y~VrP~~GiI~P~~s~~V~I 70 (243)
..|+++|+|..+|.|- .-+. .++-.. -+.+.|.|+++.++.+
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~-~~~~~~-~~~~mv~P~s~~~~~l 208 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNV-GGRKLG-LNSGMVAPFSTRQFPL 208 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEee-CceecC-CCcceECCCccceeec
Confidence 6899999999999998 4433 443333 7889999999887554
No 200
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=30.74 E-value=1.2e+02 Score=25.23 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=11.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQ 205 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~ 205 (243)
++.++...+..|+.|+..+.++...+++
T Consensus 112 e~~~l~~~~e~Le~e~~~L~~~~~~~~e 139 (161)
T TIGR02894 112 QNESLQKRNEELEKELEKLRQRLSTIEE 139 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333333
No 201
>PRK14143 heat shock protein GrpE; Provisional
Probab=30.58 E-value=1.3e+02 Score=26.54 Aligned_cols=33 Identities=9% Similarity=0.182 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 179 STEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
+.++.+++..|++|...+..+..+++.+.+.+|
T Consensus 69 ~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~R 101 (238)
T PRK14143 69 LAQLEQELESLKQELEELNSQYMRIAADFDNFR 101 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333333333333
No 202
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.49 E-value=1.3e+02 Score=26.27 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026107 195 SVIQINNKLQQELELLRR 212 (243)
Q Consensus 195 ~~~~q~~~l~~e~~~l~~ 212 (243)
.|..|+++|+.-.++|+.
T Consensus 157 dL~~QRe~L~rar~rL~~ 174 (220)
T KOG1666|consen 157 DLHGQREQLERARERLRE 174 (220)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 355555555544444443
No 203
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=30.36 E-value=48 Score=26.25 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 026107 223 FIYVVIVGFIGIILGYLMKK 242 (243)
Q Consensus 223 ~~~v~~v~ll~~llg~~~~~ 242 (243)
+..++.|.++.+||.|++++
T Consensus 71 ~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 71 FGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555666677787764
No 204
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.23 E-value=46 Score=24.66 Aligned_cols=16 Identities=31% Similarity=0.804 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 026107 225 YVVIVGFIGIILGYLM 240 (243)
Q Consensus 225 ~v~~v~ll~~llg~~~ 240 (243)
.+++|+|+++++||=+
T Consensus 30 ~iAlvGllGilvGeq~ 45 (93)
T COG4317 30 AIALVGLLGILVGEQI 45 (93)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3469999999999843
No 205
>PHA02657 hypothetical protein; Provisional
Probab=30.20 E-value=52 Score=24.50 Aligned_cols=19 Identities=26% Similarity=0.516 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 026107 223 FIYVVIVGFIGIILGYLMK 241 (243)
Q Consensus 223 ~~~v~~v~ll~~llg~~~~ 241 (243)
..|++.+|++.|+|=|+.+
T Consensus 31 tvfv~vI~il~flLLYLvk 49 (95)
T PHA02657 31 TIFIFVVCILIYLLIYLVD 49 (95)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999865
No 206
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=30.15 E-value=1.4e+02 Score=23.08 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=16.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
|..+-+++.+.+..|+.++.+..+....|+.+++
T Consensus 35 L~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ 68 (107)
T PF09304_consen 35 LAKQKDQLRNALQSLQAQNASRNQRIAELQAKID 68 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555555554444444544444
No 207
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=29.82 E-value=77 Score=24.62 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=27.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
..+..+..+++.++.|.+.+.+++..|..|...|+.
T Consensus 50 ~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~d 85 (117)
T COG2919 50 ADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKD 85 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345677777778888888888888888888777764
No 208
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=29.70 E-value=1.1e+02 Score=23.06 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=22.2
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELELL 210 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l 210 (243)
.++.+...+...+.+|+++...+..+-+.++.++..+
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666555443
No 209
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=29.38 E-value=96 Score=27.11 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026107 181 EARALISKLTEEKNSVIQINNK 202 (243)
Q Consensus 181 e~~~~i~~L~~e~~~~~~q~~~ 202 (243)
++.+++..|+.|.+.+..+|++
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~ 74 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQ 74 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344443333333333
No 210
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=29.29 E-value=95 Score=29.08 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=22.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRRQANRSSSGLPFI 224 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~~~~~~~g~~~~ 224 (243)
++.++.++...+..++.|++.+.++.++.+++++. +.++-..|-|+.
T Consensus 285 ~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee---rg~~mtD~sPlv 331 (359)
T PF10498_consen 285 VQEKYKQASEGVSERTRELAEISEELEQVKQEMEE---RGSSMTDGSPLV 331 (359)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCCCCHHH
Confidence 34444555555555555555555555555544442 112223566653
No 211
>PRK07857 hypothetical protein; Provisional
Probab=29.26 E-value=1.8e+02 Score=22.41 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 179 STEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
+.++.++|..+.+|+-.++.+|..+-.+...++
T Consensus 30 L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K 62 (106)
T PRK07857 30 IDELREEIDRLDAEILALVKRRTEVSQAIGKAR 62 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555544444444433
No 212
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=29.23 E-value=2.1e+02 Score=23.29 Aligned_cols=58 Identities=16% Similarity=0.318 Sum_probs=37.6
Q ss_pred eeeccc---C-CCeeeEEEEEEcCCCCeEE-EEEeecC-CC--cEEEeCCceeeCCCCEEEEEEEe
Q 026107 15 LQFPFE---L-RKQISCSLQLSNKTDNYVA-FKVKTTN-PK--KYCVRPNTGVVLPRSTCDVIVTM 72 (243)
Q Consensus 15 L~F~~~---~-~~~~~~~l~L~N~s~~~Va-FKVKTT~-p~--~Y~VrP~~GiI~P~~s~~V~Itl 72 (243)
.+|.+. + .+-+.-.|+++|.++..+. -+|.... +. +-.--|..+.|+||+++.+.+-.
T Consensus 73 Y~F~RqP~~~s~~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~~I~~L~pg~s~t~~lgI 138 (145)
T PF14796_consen 73 YRFSRQPSLYSPSMVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFPEIESLEPGASVTVSLGI 138 (145)
T ss_pred EEEccCCcCCCCCcEEEEEEEEecCCCeecceEECCCCCCCCcEeeccCcccccCCCCeEEEEEEE
Confidence 556662 2 3457788999999997553 2333322 22 33444789999999998877644
No 213
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=29.15 E-value=1.4e+02 Score=26.11 Aligned_cols=18 Identities=28% Similarity=0.602 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 026107 223 FIYVVIVGFIGIILGYLM 240 (243)
Q Consensus 223 ~~~v~~v~ll~~llg~~~ 240 (243)
+++-.+.+..|++|||+.
T Consensus 200 w~~g~v~~~~Al~La~~r 217 (220)
T KOG3156|consen 200 WLIGVVTGTSALVLAYLR 217 (220)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445567778889999875
No 214
>PRK07075 isochorismate-pyruvate lyase; Reviewed
Probab=29.12 E-value=2e+02 Score=21.64 Aligned_cols=33 Identities=3% Similarity=0.028 Sum_probs=22.1
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQ 205 (243)
Q Consensus 173 ~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~ 205 (243)
.+++.++++...+|..|=.||..+.++.-.++.
T Consensus 11 ~~lR~~ID~ID~~iv~LL~eR~~~~~~ia~~K~ 43 (101)
T PRK07075 11 DDIREAIDRLDRDIIAALGRRMQYVKAASRFKP 43 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345667777777777777777777776665543
No 215
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=28.96 E-value=96 Score=27.51 Aligned_cols=35 Identities=11% Similarity=0.098 Sum_probs=27.6
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
-.+.+..|+++++.++.++...+++|.+.|+.+-.
T Consensus 90 RFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 90 RFRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888888888876654
No 216
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=28.90 E-value=64 Score=27.29 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=20.9
Q ss_pred CeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEe
Q 026107 37 NYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTM 72 (243)
Q Consensus 37 ~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itl 72 (243)
++|+||+ |.+.-|.||+++++.+..
T Consensus 116 Hrvs~tl-----------p~wqslapG~s~~~~~~Y 140 (180)
T PF06483_consen 116 HRVSFTL-----------PAWQSLAPGASVELDMVY 140 (180)
T ss_pred EEEEEEC-----------CCccccCCCCEEEEeEEE
Confidence 6777777 778889999999998764
No 217
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=28.81 E-value=1.4e+02 Score=26.95 Aligned_cols=36 Identities=25% Similarity=0.032 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhc
Q 026107 179 STEARALISKLTEEKNSVIQINN----KLQQELELLRRQA 214 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~~q~~----~l~~e~~~l~~~~ 214 (243)
+.++.++-.+|++|...+.++.+ .+++|.++||+..
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666667666554423222 2567777888743
No 218
>PRK13673 hypothetical protein; Provisional
Probab=28.22 E-value=1.1e+02 Score=24.19 Aligned_cols=34 Identities=24% Similarity=0.680 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHh
Q 026107 206 ELELLRRQANRSSSGLPFIYVVIVGFIGIILGYLM 240 (243)
Q Consensus 206 e~~~l~~~~~~~~~g~~~~~v~~v~ll~~llg~~~ 240 (243)
|+...|++.+++.+|+-.+++++ +++-+++||.+
T Consensus 78 Em~l~r~kk~k~~~~~~~~~ii~-lvlti~lG~~L 111 (118)
T PRK13673 78 EMSLAKRKKGKPTGGFWWIFIIV-LVLTILLGLIL 111 (118)
T ss_pred HHHHHHHHcCCCcccHHHHHHHH-HHHHHHHHHHh
Confidence 56666666555556765555544 45555777643
No 219
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.14 E-value=61 Score=23.38 Aligned_cols=16 Identities=25% Similarity=0.758 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhcc
Q 026107 227 VIVGFIGIILGYLMKK 242 (243)
Q Consensus 227 ~~v~ll~~llg~~~~~ 242 (243)
+++.+++.-|||++++
T Consensus 11 Fllvi~gMsiG~I~kr 26 (77)
T COG2991 11 FLLVIAGMSIGYIFKR 26 (77)
T ss_pred HHHHHHHHhHhhheec
Confidence 5566778889999876
No 220
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=28.08 E-value=74 Score=24.33 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=20.2
Q ss_pred eeEEEEEEcCCCCeEEEEEeecCCC
Q 026107 25 ISCSLQLSNKTDNYVAFKVKTTNPK 49 (243)
Q Consensus 25 ~~~~l~L~N~s~~~VaFKVKTT~p~ 49 (243)
.+-+|++.+-.+.-+-||||.++|-
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~L 43 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPL 43 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChH
Confidence 4567888886668889999999883
No 221
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=28.00 E-value=1.5e+02 Score=24.05 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 026107 189 LTEEKNSVIQINN 201 (243)
Q Consensus 189 L~~e~~~~~~q~~ 201 (243)
|..|+..++.++.
T Consensus 71 L~~EL~~l~sEk~ 83 (140)
T PF10473_consen 71 LELELDTLRSEKE 83 (140)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 222
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=27.89 E-value=1.3e+02 Score=23.41 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 186 ISKLTEEKNSVIQINNKLQQELEL 209 (243)
Q Consensus 186 i~~L~~e~~~~~~q~~~l~~e~~~ 209 (243)
..+|+.....|.+||+-|+-+.+.
T Consensus 74 ~~rlkkk~~~LeEENNlLklKiev 97 (108)
T cd07429 74 VLRLKKKNQQLEEENNLLKLKIEV 97 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666554443
No 223
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=27.86 E-value=89 Score=22.28 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=16.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELEL 209 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~ 209 (243)
|+..+....++-..|.+..+.+.++...|.+.+.+
T Consensus 33 Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 33 LQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444555555555555555444443
No 224
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=27.82 E-value=58 Score=23.42 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=16.5
Q ss_pred ccHH-HHHHHHHHHHHHHHHhcc
Q 026107 221 LPFI-YVVIVGFIGIILGYLMKK 242 (243)
Q Consensus 221 ~~~~-~v~~v~ll~~llg~~~~~ 242 (243)
.|+. ..+++|++|.+++++|-|
T Consensus 52 iPvaagl~ll~lig~Fis~vMlK 74 (81)
T KOG3488|consen 52 IPVAAGLFLLCLIGTFISLVMLK 74 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Confidence 4443 347889999999999865
No 225
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=27.79 E-value=3.2e+02 Score=22.44 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=24.9
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
..+.+.++-.+++.+.+.|...+.++-+...++.+.+.
T Consensus 70 ~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~ 107 (157)
T PF14235_consen 70 AYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHAL 107 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 34456666677777777777777777766666655443
No 226
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=27.78 E-value=1.5e+02 Score=21.92 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=19.6
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKL 203 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l 203 (243)
+|++++.++++++..++.+++.+..+.+-|
T Consensus 74 ~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 74 ELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355667777777777777776666665543
No 227
>PRK02119 hypothetical protein; Provisional
Probab=27.61 E-value=1.7e+02 Score=20.80 Aligned_cols=35 Identities=6% Similarity=-0.038 Sum_probs=25.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
.-+.+++..|.+-..+++.+.++.+.|.+++..+.
T Consensus 23 ~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 23 NLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35667777777778788888888888877666543
No 228
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=27.50 E-value=2.8e+02 Score=24.29 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=30.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHh-cCCCCCCccHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQELE-------LLRRQ-ANRSSSGLPFIYVVIVGFIGIILGYL 239 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~-------~l~~~-~~~~~~g~~~~~v~~v~ll~~llg~~ 239 (243)
+.|..+..+|.+++--.+..+.+..+++-.+. .|.-. .=.+-.||.-.+++.+.|+|.+--|+
T Consensus 15 ~~L~rle~qi~q~~~~~~~~qs~l~~~~~r~tv~slAl~~l~~S~iy~~~~~y~~~~~It~~llgs~slym 85 (251)
T COG5415 15 ADLSRLESQIHQLDVALKKSQSILSQWQSRLTVYSLALTVLALSYIYWEYHGYRPYLVITALLLGSGSLYM 85 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhHHHH
Confidence 45556666666555544444444444433222 11000 00123688877777777777433333
No 229
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=27.47 E-value=20 Score=31.30 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=0.0
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 172 QYEPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 172 ~~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
.+|...+.+.+...|..|-+|...++++|++|+.|..+|.
T Consensus 124 IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL~ 163 (243)
T PF08961_consen 124 IEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARLL 163 (243)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666677777777777777777777766663
No 230
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=27.26 E-value=1e+02 Score=18.18 Aligned_cols=17 Identities=29% Similarity=0.422 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 026107 224 IYVVIVGFIGIILGYLM 240 (243)
Q Consensus 224 ~~v~~v~ll~~llg~~~ 240 (243)
-.+..+.++-.|+||+.
T Consensus 4 ~vi~G~ilv~lLlgYLv 20 (29)
T PRK14748 4 GVITGVLLVFLLLGYLV 20 (29)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555666667777764
No 231
>PF09640 DUF2027: Domain of unknown function (DUF2027); InterPro: IPR018598 This protein domain is of unknown function. though putatively involved in DNA mismatch repair. It is associated with IPR002625 from INTERPRO. ; PDB: 2HUH_A.
Probab=27.25 E-value=1.1e+02 Score=25.51 Aligned_cols=68 Identities=12% Similarity=0.204 Sum_probs=45.8
Q ss_pred eeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEeccCCCCCCCCCCCceEEEEEEEcCCCC
Q 026107 25 ISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGA 99 (243)
Q Consensus 25 ~~~~l~L~N~s~~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p~~~~~kDKFlVqs~~v~~~~ 99 (243)
..-..-|.|-|+..+-|-.-+...+.|.+| +.|.|+|+..+-|.-.-.. +...-.+..||.+.--.+.
T Consensus 18 T~fE~YlVNDSNYy~~y~y~~~~g~~w~lr-s~G~iEPNtKl~ieef~~~------eLN~~~~v~vQ~iAyK~~K 85 (162)
T PF09640_consen 18 TRFECYLVNDSNYYLHYTYLTAEGNSWTLR-SAGEIEPNTKLFIEEFSKE------ELNDLERVAVQLIAYKKDK 85 (162)
T ss_dssp --EEEEEEE-SSSEEEEEEEEEETTEEEEE-EEEEE-TTEEEEEEEE-GG------GGGG-SSEEEEEEEE-SSS
T ss_pred CceEEEEEecCccEEEEEEEeccCCeEEEE-ecceECCCceeehhhcCHH------HhhccceeEEEEEEEcCCC
Confidence 345677899999999999999888899988 6899999988777533221 1123456777877776554
No 232
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=27.04 E-value=1.6e+02 Score=23.22 Aligned_cols=9 Identities=67% Similarity=0.826 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 026107 203 LQQELELLR 211 (243)
Q Consensus 203 l~~e~~~l~ 211 (243)
|+.++..|+
T Consensus 73 L~~el~~l~ 81 (120)
T PF12325_consen 73 LEQELEELQ 81 (120)
T ss_pred HHHHHHHHH
Confidence 334444333
No 233
>TIGR02327 int_mem_ywzB conserved hypothetical integral membrane protein. Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the Firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes ywzB from Bacillus subtilis; Pfam model pfam06612 describes the same family as Protein of unknown function DUF1146.
Probab=26.91 E-value=57 Score=23.14 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=16.1
Q ss_pred CccHHHHHHHHHHHHHHHHHhcc
Q 026107 220 GLPFIYVVIVGFIGIILGYLMKK 242 (243)
Q Consensus 220 g~~~~~v~~v~ll~~llg~~~~~ 242 (243)
|-+.+.=+++.++|+.+||....
T Consensus 30 ~~~~q~~ll~vllaIalGylvs~ 52 (68)
T TIGR02327 30 QNVGQLRVLVVLIAIALGYTVSH 52 (68)
T ss_pred CCchHHHHHHHHHHHHHHHHHHH
Confidence 44556667777888888887653
No 234
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=26.71 E-value=1.6e+02 Score=24.06 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=26.9
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
-++.+.+++...+.+|++++..+.++...+.+++..+.+
T Consensus 98 ~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 98 FLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777777777666665443
No 235
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=26.51 E-value=98 Score=27.51 Aligned_cols=39 Identities=33% Similarity=0.367 Sum_probs=20.9
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 026107 173 YEPQDKSTEARALISKLTEEKNSVIQIN-------NKLQQELELLR 211 (243)
Q Consensus 173 ~~l~~~~~e~~~~i~~L~~e~~~~~~q~-------~~l~~e~~~l~ 211 (243)
++++....++..+-.+|..|.+.|+++| ..|..+++.+|
T Consensus 93 ~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~ 138 (292)
T KOG4005|consen 93 EEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLR 138 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4555555566555555555555555544 44445555444
No 236
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=26.32 E-value=1.8e+02 Score=24.55 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=14.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
+++++.+.-..|++++......|+.|..++.
T Consensus 75 R~~~L~qvN~lLReQLEq~~~~N~~L~~dl~ 105 (182)
T PF15035_consen 75 RSEELAQVNALLREQLEQARKANEALQEDLQ 105 (182)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555544444
No 237
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.25 E-value=76 Score=26.52 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026107 187 SKLTEEKNSVIQINNKLQQELELLRRQA 214 (243)
Q Consensus 187 ~~L~~e~~~~~~q~~~l~~e~~~l~~~~ 214 (243)
.++++|...+.+|.++.+.+.+.|++|.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666777654
No 238
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=26.24 E-value=1.1e+02 Score=29.74 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=17.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQ 205 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~ 205 (243)
++-.++..+|..|+.+...+++|.++|+-
T Consensus 286 aeNqeL~kkV~~Le~~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 286 AENQELQKKVEELELSNRSLLAQLKKLQT 314 (472)
T ss_pred cCcHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34456666666666666666666655543
No 239
>PRK14160 heat shock protein GrpE; Provisional
Probab=26.23 E-value=1.3e+02 Score=26.11 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=18.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 176 ~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
+..+..+.+.+.+|+++...+..+...++.+.+..|+
T Consensus 60 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RK 96 (211)
T PRK14160 60 KDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRK 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555544444444445554444
No 240
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=26.18 E-value=1.6e+02 Score=24.64 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=10.3
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQ 204 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~ 204 (243)
.++.++.+....|..|+.++..+..+...+.
T Consensus 106 ~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~ 136 (194)
T PF08614_consen 106 ELEKELSEKERRLAELEAELAQLEEKIKDLE 136 (194)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 241
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=26.15 E-value=1e+02 Score=28.32 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=23.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
.+..++..++..++.|.+.+.+|.+++++++..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRS 41 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455566666666666666666666667766665553
No 242
>PF11668 Gp_UL130: HCMV glycoprotein pUL130; InterPro: IPR021038 This entry represents UL130 from Human cytomegalovirus, a glycoprotein secreted from infected cells that is incorporated into the virion envelope as a Golgi-matured form. The protein promotes endothelial cell infection through a producer cell modification of the virion [].
Probab=26.06 E-value=1.6e+02 Score=24.18 Aligned_cols=43 Identities=26% Similarity=0.592 Sum_probs=29.2
Q ss_pred eeecc-cCCCeeeEEEEEEcC---CCCeEEEEEeec------CCCcEEEeCCc
Q 026107 15 LQFPF-ELRKQISCSLQLSNK---TDNYVAFKVKTT------NPKKYCVRPNT 57 (243)
Q Consensus 15 L~F~~-~~~~~~~~~l~L~N~---s~~~VaFKVKTT------~p~~Y~VrP~~ 57 (243)
|+|.. ...+-..|.++|.-- ....|+|++|-+ -+.-+|++||-
T Consensus 102 Lry~vkDG~~~~~C~m~v~TwA~~~~~~i~Fq~kiel~~A~~~~stiCthPnl 154 (156)
T PF11668_consen 102 LRYRVKDGTRWEMCIMRVQTWAHTKSNYIQFQVKIELTHAYRQPSTICTHPNL 154 (156)
T ss_pred EEEEeccCCceeeEEEEeeehhhhhcccEEEEEEEEEeeccCCccceeccccc
Confidence 55654 334567899998762 235599999843 45678999984
No 243
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=26.05 E-value=59 Score=29.33 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=18.8
Q ss_pred ccHHHHHHHHHHHHHHHHHhcc
Q 026107 221 LPFIYVVIVGFIGIILGYLMKK 242 (243)
Q Consensus 221 ~~~~~v~~v~ll~~llg~~~~~ 242 (243)
..+..|++++|+++|+.|++++
T Consensus 236 iALG~v~ll~l~Gii~~~~~r~ 257 (281)
T PF12768_consen 236 IALGTVFLLVLIGIILAYIRRR 257 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4467889999999999999986
No 244
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=26.02 E-value=1.3e+02 Score=30.24 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=11.3
Q ss_pred eeeCCCCEEEEEEEeccC
Q 026107 58 GVVLPRSTCDVIVTMQSQ 75 (243)
Q Consensus 58 GiI~P~~s~~V~Itlq~~ 75 (243)
|+|.|..+-+|.|..+|-
T Consensus 211 g~V~~m~~~Dv~V~I~pV 228 (652)
T COG2433 211 GVVKPMRGGDVQVRIEPV 228 (652)
T ss_pred hhcccccCCceEEEEEEh
Confidence 556666666666666553
No 245
>PRK00295 hypothetical protein; Provisional
Probab=25.81 E-value=2.4e+02 Score=19.76 Aligned_cols=35 Identities=9% Similarity=-0.001 Sum_probs=25.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
.-+.+++..|.+...+++.+.++.+.|.+++..+.
T Consensus 19 ~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 19 DTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567777777777777888888887777666544
No 246
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=25.78 E-value=1.5e+02 Score=20.78 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=23.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
.-+.+++..+.....+++.+.++.+.|.+++..++
T Consensus 18 ~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 18 DTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667777788888888888888888877777655
No 247
>PF15058 Speriolin_N: Speriolin N terminus
Probab=25.56 E-value=98 Score=26.55 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 179 STEARALISKLTEEKNSVIQINNKLQ 204 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~~q~~~l~ 204 (243)
|.-+..+|.+|-.|+.++.+|.+-++
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLir 32 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIR 32 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44456666666666666655555554
No 248
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.49 E-value=1.4e+02 Score=24.43 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 026107 196 VIQINNKLQQELELLR 211 (243)
Q Consensus 196 ~~~q~~~l~~e~~~l~ 211 (243)
+.+++..+...+..|+
T Consensus 121 l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 121 LEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444444
No 249
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.45 E-value=71 Score=24.96 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=18.2
Q ss_pred CCccHHHHHHHHHHHHHHHHHh
Q 026107 219 SGLPFIYVVIVGFIGIILGYLM 240 (243)
Q Consensus 219 ~g~~~~~v~~v~ll~~llg~~~ 240 (243)
.|.+.|+.++..||+|..|++.
T Consensus 70 agTsPwglIv~lllGf~AG~ln 91 (116)
T COG5336 70 AGTSPWGLIVFLLLGFGAGVLN 91 (116)
T ss_pred cCCCcHHHHHHHHHHHHHHHHH
Confidence 4677888899999999999874
No 250
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=25.43 E-value=81 Score=19.37 Aligned_cols=18 Identities=11% Similarity=0.386 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 026107 224 IYVVIVGFIGIILGYLMK 241 (243)
Q Consensus 224 ~~v~~v~ll~~llg~~~~ 241 (243)
.+..++.++++++.|+++
T Consensus 17 giay~Lm~~Al~~tyl~H 34 (34)
T PF06376_consen 17 GIAYMLMLVALVVTYLFH 34 (34)
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 455677788888888875
No 251
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=25.40 E-value=99 Score=29.25 Aligned_cols=38 Identities=8% Similarity=0.052 Sum_probs=25.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
++.+...+..++..|+++...+.+|.+++++|+..++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455566666777777777777777777777777654
No 252
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=25.25 E-value=1.5e+02 Score=23.39 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=30.9
Q ss_pred CeeeEEEEEEcCCCCeEEE---EE------------eecCCCcEEEeC--CceeeCCCCEEEEEEEecc
Q 026107 23 KQISCSLQLSNKTDNYVAF---KV------------KTTNPKKYCVRP--NTGVVLPRSTCDVIVTMQS 74 (243)
Q Consensus 23 ~~~~~~l~L~N~s~~~VaF---KV------------KTT~p~~Y~VrP--~~GiI~P~~s~~V~Itlq~ 74 (243)
....-..+|.|.++.+++| ++ |+-.|..|...+ +..-|.||+++.+.+.+..
T Consensus 68 ~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 68 GVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred CEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 3444555666666554443 11 122456665544 3445999999999998853
No 253
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=25.03 E-value=2.1e+02 Score=18.80 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 188 KLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 188 ~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
.|+.+...+..|.+.|+..+..-++
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555566666655555444
No 254
>PRK10722 hypothetical protein; Provisional
Probab=24.77 E-value=1.9e+02 Score=25.65 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 183 RALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 183 ~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
.+++-+|+++...+.++.+....+++.|.
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~rKLEnLT 203 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTTRKLENLT 203 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555443
No 255
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=24.77 E-value=19 Score=27.02 Aligned_cols=23 Identities=9% Similarity=0.375 Sum_probs=18.4
Q ss_pred CccHHHHHHHHHHHHHHHHHhcc
Q 026107 220 GLPFIYVVIVGFIGIILGYLMKK 242 (243)
Q Consensus 220 g~~~~~v~~v~ll~~llg~~~~~ 242 (243)
.=|++|.+=.+|=+.+|||+|+.
T Consensus 66 iESlLFaLQAaiGagiIgY~~G~ 88 (91)
T TIGR01165 66 IESLLFALQAALGALVIGYVIGY 88 (91)
T ss_pred HHHHHHHHHHHhhheeeeEEEEE
Confidence 34578888888888899998874
No 256
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=24.74 E-value=78 Score=21.62 Aligned_cols=17 Identities=6% Similarity=0.354 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhc
Q 026107 225 YVVIVGFIGIILGYLMK 241 (243)
Q Consensus 225 ~v~~v~ll~~llg~~~~ 241 (243)
|.+.++|+-+|-||+++
T Consensus 5 f~~ti~lvv~LYgY~yh 21 (56)
T TIGR02736 5 FAFTLLLVIFLYAYIYH 21 (56)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666788899876
No 257
>PF07051 OCIA: Ovarian carcinoma immunoreactive antigen (OCIA); InterPro: IPR009764 This family consists of several ovarian carcinoma immunoreactive antigen (OCIA) and related eukaryotic sequences. The function of this family is unknown [,].
Probab=24.62 E-value=40 Score=26.30 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 026107 224 IYVVIVGFIGIILGYL 239 (243)
Q Consensus 224 ~~v~~v~ll~~llg~~ 239 (243)
.-|++.+++|+++|.+
T Consensus 76 PKv~~ag~~Gy~~GK~ 91 (111)
T PF07051_consen 76 PKVAFAGILGYFVGKI 91 (111)
T ss_pred cHHHHHHHHHHhhhHH
Confidence 3444445555555543
No 258
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=24.61 E-value=1.3e+02 Score=22.63 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=18.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELEL 209 (243)
Q Consensus 176 ~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~ 209 (243)
+.++..+...+.+|.++...+..+...+++.+..
T Consensus 83 ~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 83 KKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666555555555555544444
No 259
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=24.57 E-value=49 Score=30.08 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=20.6
Q ss_pred CCccHHHHHHHHHHHHHHHHHhccC
Q 026107 219 SGLPFIYVVIVGFIGIILGYLMKKI 243 (243)
Q Consensus 219 ~g~~~~~v~~v~ll~~llg~~~~~~ 243 (243)
..+|+.+++...|+=+++|||+.|+
T Consensus 276 ~l~piil~IG~vl~i~~Ig~~ifK~ 300 (305)
T PF04639_consen 276 SLLPIILIIGGVLLIVFIGYFIFKR 300 (305)
T ss_pred hhhHHHHHHHHHHHHHHhhheeeEe
Confidence 4678888888888889999998763
No 260
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=24.43 E-value=1.1e+02 Score=27.12 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=6.6
Q ss_pred CcccchHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKL 189 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L 189 (243)
+++.|+.|.+++-..|
T Consensus 139 e~kekl~E~~~EkeeL 154 (290)
T COG4026 139 ELKEKLEELQKEKEEL 154 (290)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444433333
No 261
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=24.41 E-value=1.1e+02 Score=30.73 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=24.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
..+.++.+++.+|.++++++.++.+.++++.+.++.
T Consensus 93 ~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~ 128 (646)
T PRK05771 93 EELEKIEKEIKELEEEISELENEIKELEQEIERLEP 128 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 355666677777777777777777777766665553
No 262
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=24.41 E-value=1.1e+02 Score=27.32 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 180 TEARALISKLTEEKNSVIQINNKL 203 (243)
Q Consensus 180 ~e~~~~i~~L~~e~~~~~~q~~~l 203 (243)
.+|.+.|+.|++|+..|+.|..++
T Consensus 118 ~~AlqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 118 EAALQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888888887665
No 263
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=24.38 E-value=2.8e+02 Score=20.97 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=14.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKL 203 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l 203 (243)
++.+.++...+|..|=+||..+..+.-.+
T Consensus 9 lR~~ID~ID~eIl~LL~eR~~~~~~Ig~~ 37 (102)
T TIGR01801 9 LRAEVDQLNRQILALISRRGEVVAQIGHA 37 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444444333
No 264
>KOG3620 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.27 E-value=1.9e+02 Score=31.73 Aligned_cols=79 Identities=18% Similarity=0.292 Sum_probs=56.6
Q ss_pred CceEEeCCeeeecccC-CCeeeEEEEEEcCCCCeEEEEEeec-CCCcEEEe---CCceeeCCCCEEEEE-EEeccCCCCC
Q 026107 6 ELLNIEPQELQFPFEL-RKQISCSLQLSNKTDNYVAFKVKTT-NPKKYCVR---PNTGVVLPRSTCDVI-VTMQSQKEAP 79 (243)
Q Consensus 6 ~ll~i~P~eL~F~~~~-~~~~~~~l~L~N~s~~~VaFKVKTT-~p~~Y~Vr---P~~GiI~P~~s~~V~-Itlq~~~~~p 79 (243)
.-|.+.|.++.|.-.| .+.+++.|.|.|--+++|.-|=-+- -+-+|+-+ -|-+.|+||.-..|- |.+.+
T Consensus 525 GsL~~iPeqi~f~ptFPgK~v~~~L~i~nSF~~~v~v~~i~l~edvrf~fk~f~~n~~~l~pg~ltk~griyFdP----- 599 (1626)
T KOG3620|consen 525 GSLEIIPEQISFKPTFPGKMVTAVLSIRNSFTHPVHVKGISLAEDVRFRFKDFNANGTTLAPGTLTKVGRIYFDP----- 599 (1626)
T ss_pred ceeEechhhhccCCCCCcceeeeeeehhcccCcceeeeeeeeccCcceeeecccCCccccccccccccceEEecc-----
Confidence 3578899999997765 4679999999999999887764333 23355444 578899999888874 54433
Q ss_pred CCCCCCceEEE
Q 026107 80 PDMQCKDKFLL 90 (243)
Q Consensus 80 ~~~~~kDKFlV 90 (243)
-..|.|...|
T Consensus 600 -~a~CgdhCYi 609 (1626)
T KOG3620|consen 600 -AAVCGDHCYI 609 (1626)
T ss_pred -cccccCeeEe
Confidence 3468876655
No 265
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=24.06 E-value=83 Score=23.00 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=9.7
Q ss_pred CccHHHHHHHHHHHHHH
Q 026107 220 GLPFIYVVIVGFIGIIL 236 (243)
Q Consensus 220 g~~~~~v~~v~ll~~ll 236 (243)
|+..+..++++++.+||
T Consensus 3 g~g~~ellIIlvIvlll 19 (78)
T PRK00720 3 SFSIWHWLIVLAVVLLL 19 (78)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 56666665555555543
No 266
>PRK02793 phi X174 lysis protein; Provisional
Probab=23.95 E-value=2.2e+02 Score=20.12 Aligned_cols=34 Identities=12% Similarity=0.056 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
-+.+++..|.+...+.+.+.++.+.|.+++..++
T Consensus 23 tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 23 TIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556677777777777777777777776666543
No 267
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=23.88 E-value=2.9e+02 Score=22.11 Aligned_cols=33 Identities=15% Similarity=0.053 Sum_probs=20.5
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 172 QYEPQDKSTEARALISKLTEEKNSVIQINNKLQ 204 (243)
Q Consensus 172 ~~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~ 204 (243)
..+++.+++++.+++..|+++...+..+.+.++
T Consensus 13 ~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~ 45 (165)
T PF01025_consen 13 IEELEEELEELEKEIEELKERLLRLQAEFENYR 45 (165)
T ss_dssp HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777766555555544443
No 268
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=23.85 E-value=1.6e+02 Score=21.56 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 179 STEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
..+++..+..|.+.......++++|++|-..|++
T Consensus 25 i~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 25 ILELQDSLEALSDRVEEVKEENEKLESENEYLQQ 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555666666666665554
No 269
>PF14645 Chibby: Chibby family
Probab=23.82 E-value=1.6e+02 Score=22.98 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026107 187 SKLTEEKNSVIQINNKLQQE 206 (243)
Q Consensus 187 ~~L~~e~~~~~~q~~~l~~e 206 (243)
.+|+++..++.+||+-|+=+
T Consensus 74 ~~l~~~n~~L~EENN~Lklk 93 (116)
T PF14645_consen 74 QRLRKENQQLEEENNLLKLK 93 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556555433
No 270
>PRK14127 cell division protein GpsB; Provisional
Probab=23.49 E-value=2.7e+02 Score=21.53 Aligned_cols=37 Identities=11% Similarity=0.102 Sum_probs=26.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
+-..+..+.+++..|++|+..+.++...++.+....+
T Consensus 35 V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 35 VIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3445667777888888888888887777776666443
No 271
>PRK11876 petM cytochrome b6-f complex subunit PetM; Reviewed
Probab=23.49 E-value=1.1e+02 Score=18.55 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhccC
Q 026107 225 YVVIVGFIGIILGYLMKKI 243 (243)
Q Consensus 225 ~v~~v~ll~~llg~~~~~~ 243 (243)
+...+.++++.+||++-|+
T Consensus 11 i~~~LvlvGlalGf~LLki 29 (32)
T PRK11876 11 LFWVLIPVGLAGGALLLKL 29 (32)
T ss_pred HHHHHHHHHHHHHHHheee
Confidence 3455667788888887664
No 272
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=23.48 E-value=44 Score=25.21 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=15.0
Q ss_pred CCccHHHH-HHHHHHHHHHHHHhcc
Q 026107 219 SGLPFIYV-VIVGFIGIILGYLMKK 242 (243)
Q Consensus 219 ~g~~~~~v-~~v~ll~~llg~~~~~ 242 (243)
.|..+..+ ++.+|++||+.||+.+
T Consensus 69 agi~vg~~~~v~~lv~~l~w~f~~r 93 (96)
T PTZ00382 69 AGISVAVVAVVGGLVGFLCWWFVCR 93 (96)
T ss_pred EEEEeehhhHHHHHHHHHhheeEEe
Confidence 35556544 4446778888777754
No 273
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=23.39 E-value=95 Score=25.85 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=17.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQIN 200 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~ 200 (243)
++-.|+..++.++++|+..|+|-.
T Consensus 29 eE~eeLr~EL~KvEeEI~TLrqvL 52 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTLRQVL 52 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788889999999988665543
No 274
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=23.35 E-value=1.8e+02 Score=21.12 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026107 185 LISKLTEEKNSVIQINNKLQQE 206 (243)
Q Consensus 185 ~i~~L~~e~~~~~~q~~~l~~e 206 (243)
.+..|.+++..+.+|+..|+++
T Consensus 66 ~~l~l~~~~~~l~~~l~~l~~~ 87 (91)
T cd04766 66 RILELEEELAELRAELDELRAR 87 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666655555555555443
No 275
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=23.10 E-value=1.4e+02 Score=23.49 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 026107 179 STEARALISKLTEEKNSV 196 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~ 196 (243)
+.|+.+++++|+=|+..|
T Consensus 5 ~EeLaaeL~kLqmENk~L 22 (118)
T PF05812_consen 5 MEELAAELQKLQMENKAL 22 (118)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666677666664333
No 276
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=23.05 E-value=5.5e+02 Score=23.98 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 026107 224 IYVVIVGFIGIILGYL 239 (243)
Q Consensus 224 ~~v~~v~ll~~llg~~ 239 (243)
.++++.+++|+++|..
T Consensus 398 ~~l~~~~~~Gl~lg~~ 413 (444)
T TIGR03017 398 LNLVLSIFLGMLLGIG 413 (444)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555556666554
No 277
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=23.01 E-value=97 Score=30.48 Aligned_cols=38 Identities=26% Similarity=0.207 Sum_probs=28.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
++.+++.+.+...+|.+-+.+.++|..+|++|++.|.+
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 43 (512)
T TIGR03689 6 LQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQ 43 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44566667777778888888888888888888887764
No 278
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=22.99 E-value=3.1e+02 Score=20.15 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=22.4
Q ss_pred CCeeeEEEEEEcCCCCe--EEEEEeecCCCcEEEeCC
Q 026107 22 RKQISCSLQLSNKTDNY--VAFKVKTTNPKKYCVRPN 56 (243)
Q Consensus 22 ~~~~~~~l~L~N~s~~~--VaFKVKTT~p~~Y~VrP~ 56 (243)
+......+.|+|.++.+ +.||+-==..+-+.|.|.
T Consensus 23 ~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~ 59 (94)
T PF07233_consen 23 NGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPE 59 (94)
T ss_dssp CCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--T
T ss_pred CCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCC
Confidence 56788999999999766 777776556677777665
No 279
>PRK14148 heat shock protein GrpE; Provisional
Probab=22.98 E-value=2.1e+02 Score=24.42 Aligned_cols=7 Identities=29% Similarity=0.577 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 026107 186 ISKLTEE 192 (243)
Q Consensus 186 i~~L~~e 192 (243)
+..|+++
T Consensus 49 l~~l~~e 55 (195)
T PRK14148 49 IKELEDS 55 (195)
T ss_pred HHHHHHH
Confidence 3333333
No 280
>smart00605 CW CW domain.
Probab=22.86 E-value=1e+02 Score=22.48 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=14.0
Q ss_pred EEEEEcC-CCCeEEEEEeecCCC
Q 026107 28 SLQLSNK-TDNYVAFKVKTTNPK 49 (243)
Q Consensus 28 ~l~L~N~-s~~~VaFKVKTT~p~ 49 (243)
.++-.+. +...||||+.++.+.
T Consensus 58 ~v~~~~~~~~~~VAfK~~~~~~~ 80 (94)
T smart00605 58 TVKKLSSSSGKKVAFKVSTDQPS 80 (94)
T ss_pred EEEEccCCCCcEEEEEEeCCCCC
Confidence 3444444 458899999866544
No 281
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=22.82 E-value=1.9e+02 Score=23.69 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=19.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
++..+.+....+.+++++...+..++.+++.+...|+.
T Consensus 96 l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~ 133 (177)
T PF13870_consen 96 LKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQ 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555544
No 282
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=22.78 E-value=1.5e+02 Score=20.55 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
.|.+..+.-..++..+.....+|..|.+++..|++.
T Consensus 19 EL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e 54 (61)
T PF08826_consen 19 ELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKE 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555666677777777766654
No 283
>COG3771 Predicted membrane protein [Function unknown]
Probab=22.69 E-value=86 Score=23.52 Aligned_cols=18 Identities=22% Similarity=0.360 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 026107 224 IYVVIVGFIGIILGYLMK 241 (243)
Q Consensus 224 ~~v~~v~ll~~llg~~~~ 241 (243)
..++.+..+||.+||++-
T Consensus 43 TLla~lF~~G~~lgwli~ 60 (97)
T COG3771 43 TLLATLFAAGFALGWLIC 60 (97)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466788889999999864
No 284
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.66 E-value=1.5e+02 Score=28.97 Aligned_cols=38 Identities=13% Similarity=0.020 Sum_probs=18.5
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
.++.++.+..++...++++++.+..+++.|+++++.++
T Consensus 87 aLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 87 EIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333333334444555555555555556655554433
No 285
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=22.58 E-value=4.4e+02 Score=21.69 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=5.8
Q ss_pred ccHHHHHHHHHHHH
Q 026107 221 LPFIYVVIVGFIGI 234 (243)
Q Consensus 221 ~~~~~v~~v~ll~~ 234 (243)
+.+.+.++..++|+
T Consensus 159 ~g~i~~~~a~~la~ 172 (177)
T PF07798_consen 159 VGVIFGCVALVLAI 172 (177)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 286
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.56 E-value=1.6e+02 Score=21.53 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=18.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQE 206 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e 206 (243)
++.+...+..+|.+|+++...+..+.+.++.+
T Consensus 67 L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 67 LEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666655555555544443
No 287
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=22.46 E-value=90 Score=27.22 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 183 RALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 183 ~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
.....+++++..++..|-+.+++|.+
T Consensus 171 ~~~Le~~~~~~~al~Kq~e~~~~Eyd 196 (216)
T KOG1962|consen 171 QKKLEKAQKKVDALKKQSEGLQDEYD 196 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 33333333444444444444444444
No 288
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=22.46 E-value=2.3e+02 Score=22.49 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKL 203 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l 203 (243)
.-+|..+.|+.|+.|++.+..-++.|
T Consensus 26 ERaEmkarIa~LEGE~r~~e~l~~dL 51 (134)
T PF08232_consen 26 ERAEMKARIAFLEGERRGQENLKKDL 51 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888877544444444
No 289
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=22.37 E-value=2.4e+02 Score=20.09 Aligned_cols=6 Identities=67% Similarity=0.750 Sum_probs=2.2
Q ss_pred HHHHHH
Q 026107 206 ELELLR 211 (243)
Q Consensus 206 e~~~l~ 211 (243)
++..|+
T Consensus 62 ~~~~l~ 67 (74)
T PF12329_consen 62 ELESLE 67 (74)
T ss_pred HHHHHH
Confidence 333333
No 290
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=22.23 E-value=63 Score=29.20 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhccC
Q 026107 227 VIVGFIGIILGYLMKKI 243 (243)
Q Consensus 227 ~~v~ll~~llg~~~~~~ 243 (243)
+++.+|-+||+|++++.
T Consensus 281 La~lvlivLiaYli~Rr 297 (306)
T PF01299_consen 281 LAGLVLIVLIAYLIGRR 297 (306)
T ss_pred HHHHHHHHHHhheeEec
Confidence 44445556778988763
No 291
>PRK06285 chorismate mutase; Provisional
Probab=22.17 E-value=2.9e+02 Score=20.42 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=15.8
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQ 204 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~ 204 (243)
+++.++++...+|..|=++|..+.++.-.++
T Consensus 11 elR~~ID~ID~~iv~Ll~~R~~l~~~I~~~K 41 (96)
T PRK06285 11 EIRKRIDEIDEQIIDLIAERTSLAKEIAELK 41 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544443
No 292
>PRK11637 AmiB activator; Provisional
Probab=22.01 E-value=1.7e+02 Score=27.70 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 184 ALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 184 ~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
..|..++++++.+.++...+++++..+++
T Consensus 89 ~~i~~~~~~i~~~~~ei~~l~~eI~~~q~ 117 (428)
T PRK11637 89 RKLRETQNTLNQLNKQIDELNASIAKLEQ 117 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444443
No 293
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=22.00 E-value=1.3e+02 Score=28.00 Aligned_cols=70 Identities=30% Similarity=0.499 Sum_probs=41.6
Q ss_pred CCCCCCc-eEEeCC-eeeecccCCCeeeEEEEEEcCCCCeEEEEEeecC----------CCcEEEeC------Cce-eeC
Q 026107 1 MMSTGEL-LNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN----------PKKYCVRP------NTG-VVL 61 (243)
Q Consensus 1 m~~~~~l-l~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~----------p~~Y~VrP------~~G-iI~ 61 (243)
||+.+.+ |.+.=+ ||.|.++ .++.+++++|+|++.| =|||... ...| .+| +-| -+.
T Consensus 189 lmS~~~lhLevsLDkEiYyHGE---~isvnV~V~NNsnKtV-KkIK~~V~Q~adi~Lfs~aqy-~~~VA~~E~~eGc~v~ 263 (402)
T KOG3865|consen 189 LMSDGPLHLEVSLDKEIYYHGE---PISVNVHVTNNSNKTV-KKIKISVRQVADICLFSTAQY-KKPVAMEETDEGCPVA 263 (402)
T ss_pred ccCCCceEEEEEecchheecCC---ceeEEEEEecCCccee-eeeEEEeEeeceEEEEecccc-cceeeeeecccCCccC
Confidence 5666433 334443 7888775 5889999999988655 3555431 1111 112 222 467
Q ss_pred CCCEEEEEEEeccC
Q 026107 62 PRSTCDVIVTMQSQ 75 (243)
Q Consensus 62 P~~s~~V~Itlq~~ 75 (243)
||++..=..++-|.
T Consensus 264 Pgstl~Kvf~l~Pl 277 (402)
T KOG3865|consen 264 PGSTLSKVFTLTPL 277 (402)
T ss_pred CCCeeeeeEEechh
Confidence 88887777766553
No 294
>PRK11637 AmiB activator; Provisional
Probab=21.98 E-value=1.2e+02 Score=28.59 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=17.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
+..+++++.++|..+++++..+.++...+++++.
T Consensus 87 ~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 87 ASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555444443
No 295
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=21.98 E-value=3.8e+02 Score=20.79 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELL 210 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l 210 (243)
.-.++...+.++..+-+++..++++|......|
T Consensus 36 d~~ea~~F~~kV~~qH~~~~~e~r~L~kKi~~l 68 (109)
T PF11690_consen 36 DKKEAYDFIDKVVDQHQRYCDERRKLRKKIQDL 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888887777888887776555544
No 296
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=21.91 E-value=2e+02 Score=19.36 Aligned_cols=17 Identities=41% Similarity=0.403 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026107 195 SVIQINNKLQQELELLR 211 (243)
Q Consensus 195 ~~~~q~~~l~~e~~~l~ 211 (243)
.+..||..|+.++..++
T Consensus 33 ~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 33 KLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444666666666554
No 297
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=21.70 E-value=2e+02 Score=25.42 Aligned_cols=42 Identities=7% Similarity=0.110 Sum_probs=28.6
Q ss_pred EEEEEcCCCCeEEEE-EeecCCCcEEEeCCceeeCCCCEEEEEE
Q 026107 28 SLQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGVVLPRSTCDVIV 70 (243)
Q Consensus 28 ~l~L~N~s~~~VaFK-VKTT~p~~Y~VrP~~GiI~P~~s~~V~I 70 (243)
.|+++|+|..++.|. ++....+ -.+....|.|.|+++..+.+
T Consensus 177 ~l~v~Nptpyyitl~~l~~~~~~-~~~~~~~~mv~P~s~~~~~l 219 (253)
T PRK15249 177 GIVIVNPQPWFASLSNLNVKVNG-ASYNLDADMIAPFSSQTWWL 219 (253)
T ss_pred EEEEECCCceEEEeeeeeeccCC-eecCCCCceECCCCccEEEc
Confidence 499999999999886 3322222 12223457899999988875
No 298
>PF08402 TOBE_2: TOBE domain; InterPro: IPR013611 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. Probably involved in the recognition of small ligands such as molybdenum (e.g. P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT). Found in ABC transporters immediately after the ATPase domain. A strong RPE motif is found at the presumed N terminus of the domain. ; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1Q12_A 1Q1B_C 2AWN_D 3RLF_B 3PUX_B 2R6G_B 3PUV_B 1Q1E_A 3PV0_B 2AWO_A ....
Probab=21.67 E-value=2.5e+02 Score=18.50 Aligned_cols=65 Identities=15% Similarity=0.256 Sum_probs=39.8
Q ss_pred eEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecCCCcEEEe-CCce---eeCCCCEEEEEEEe
Q 026107 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVR-PNTG---VVLPRSTCDVIVTM 72 (243)
Q Consensus 8 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~Y~Vr-P~~G---iI~P~~s~~V~Itl 72 (243)
|.|-|+.+.+.........+++.-.--.....-+.+++..-....+. ++.. .+.+|+.+.+.+..
T Consensus 1 l~iRPE~i~l~~~~~~~~~g~V~~~~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~~~~ 69 (75)
T PF08402_consen 1 LGIRPEDIRLSPEGENRLPGTVVSVEFLGSETRYTVRLEGGEELVVRVPNSQRDSPLEPGDEVRLSWDP 69 (75)
T ss_dssp EEE-GGGEEEESSTTTEEEEEEEEEEEESSEEEEEEEETTSSEEEEEEESSG-TTT--TTSEEEEEEEG
T ss_pred CEECcceeEEECCCCCeEEEEEEEEEECCCEEEEEEEECCCCEEEEEecCccccCCCCCCCEEEEEECc
Confidence 46788777774211235666666655566777888888777664443 4444 68899988887754
No 299
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=21.64 E-value=4.7e+02 Score=26.57 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 026107 224 IYVVIVGFIGIILGY 238 (243)
Q Consensus 224 ~~v~~v~ll~~llg~ 238 (243)
+++++.+++|+++|.
T Consensus 432 ~~l~~~~~~gl~lg~ 446 (754)
T TIGR01005 432 PIVGLAAVLGLLLGA 446 (754)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 300
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=21.63 E-value=1.4e+02 Score=26.06 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=20.7
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
++..++..+..++..|+..++.+.++...++++++.|.+
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~ 91 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQ 91 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666665555555555555555544444443
No 301
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.60 E-value=1.5e+02 Score=22.47 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=18.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
++.+...+...+.+|+++...+.++...++.++.
T Consensus 92 l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 92 LKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666665555555555554443
No 302
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=21.57 E-value=64 Score=25.90 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=15.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQ 204 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~ 204 (243)
|++++..=.++|..|++++..+.+.|..|.
T Consensus 99 Le~e~~~Kdsei~~Lr~~L~~~~~~n~~Le 128 (131)
T PF04859_consen 99 LEAELRAKDSEIDRLREKLDELNRANKSLE 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444555555555555555555443
No 303
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.54 E-value=1.8e+02 Score=25.91 Aligned_cols=41 Identities=29% Similarity=0.267 Sum_probs=24.9
Q ss_pred CcccchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Q 026107 174 EPQDKSTEARALISKLTEEKNSVI----QINNKLQQELELLRRQA 214 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~----~q~~~l~~e~~~l~~~~ 214 (243)
.+++++.++.+++..|++..++.. .-...++++++.||..+
T Consensus 61 s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~a 105 (247)
T COG3879 61 SLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLA 105 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHh
Confidence 345566667777777766666555 33344566677777644
No 304
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=21.53 E-value=86 Score=30.66 Aligned_cols=28 Identities=11% Similarity=0.264 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 185 LISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 185 ~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
+|.+|+.|+++|.+|...++++++...+
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 4555555555555554444444444333
No 305
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=21.45 E-value=3.6e+02 Score=20.33 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=31.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELLRRQA 214 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~~ 214 (243)
.++++.++|..+..|+-.++.+|..+-.+...+++..
T Consensus 5 ~L~~lR~~ID~ID~eIl~LL~eR~~~~~~Ig~~K~~~ 41 (102)
T TIGR01801 5 SLEDLRAEVDQLNRQILALISRRGEVVAQIGHAKSAQ 41 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5888999999999999999999988888888777643
No 306
>PRK09239 chorismate mutase; Provisional
Probab=21.40 E-value=2.6e+02 Score=21.26 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=14.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELEL 209 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~ 209 (243)
.+.++..+|..+..|+-.|+.+|..+-.+...
T Consensus 11 ~L~~lR~~ID~ID~eIv~LLa~R~~l~~~Ia~ 42 (104)
T PRK09239 11 ELAALRQSIDNIDAALIHMLAERFKCTQAVGV 42 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555544455554444333333
No 307
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=21.39 E-value=1e+02 Score=22.35 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=9.4
Q ss_pred CCccHHHHHHHHHHHHH
Q 026107 219 SGLPFIYVVIVGFIGII 235 (243)
Q Consensus 219 ~g~~~~~v~~v~ll~~l 235 (243)
+|++.+..++++++.+|
T Consensus 2 gg~s~~ellIIlvIvlL 18 (75)
T PRK04561 2 GSFSIWHWLVVLVIVLL 18 (75)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 36666665555555444
No 308
>PRK00736 hypothetical protein; Provisional
Probab=21.38 E-value=2.9e+02 Score=19.32 Aligned_cols=34 Identities=9% Similarity=0.043 Sum_probs=24.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQELELL 210 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l 210 (243)
.-+.+++..|.+-..+++.+.++.+.|.+++..+
T Consensus 19 ~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 19 KTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777777777777788888887777766554
No 309
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=21.27 E-value=1.8e+02 Score=19.66 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=21.1
Q ss_pred CCcccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 173 YEPQDKSTEARALISK-LTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 173 ~~l~~~~~e~~~~i~~-L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
+.|+++|++-..+|.. |..|-...+.++ .++++.+++
T Consensus 14 ~~Lk~kLd~Kk~Eil~~ln~EY~kiLk~r---~~~lEevKr 51 (56)
T PF08112_consen 14 SILKSKLDEKKSEILSNLNMEYEKILKQR---RKELEEVKR 51 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 4566777666555443 666665555554 245555554
No 310
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=21.26 E-value=2.3e+02 Score=18.00 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 026107 180 TEARALISKLTEEK 193 (243)
Q Consensus 180 ~e~~~~i~~L~~e~ 193 (243)
.|...+++++++|.
T Consensus 14 ~EvrkEl~K~K~EI 27 (40)
T PF08776_consen 14 EEVRKELQKVKEEI 27 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555543
No 311
>COG1422 Predicted membrane protein [Function unknown]
Probab=21.26 E-value=1.8e+02 Score=25.02 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=16.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHH
Q 026107 176 QDKSTEARALISKLTEEKNSVIQIN 200 (243)
Q Consensus 176 ~~~~~e~~~~i~~L~~e~~~~~~q~ 200 (243)
.+++.+.+.....+++|..++++++
T Consensus 71 ~ekm~~~qk~m~efq~e~~eA~~~~ 95 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFREAQESG 95 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3466666667777777766666643
No 312
>PHA02849 putative transmembrane protein; Provisional
Probab=21.23 E-value=1.1e+02 Score=22.41 Aligned_cols=19 Identities=32% Similarity=0.927 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 026107 223 FIYVVIVGFIGIILGYLMK 241 (243)
Q Consensus 223 ~~~v~~v~ll~~llg~~~~ 241 (243)
..+++.++++.|+|=|+.+
T Consensus 21 ~v~v~vI~i~~flLlyLvk 39 (82)
T PHA02849 21 LVFVLVISFLAFMLLYLIK 39 (82)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677888888999888764
No 313
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=21.01 E-value=1.4e+02 Score=22.90 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=15.9
Q ss_pred CCccHHHHHHHHHHHHHHHHHhc
Q 026107 219 SGLPFIYVVIVGFIGIILGYLMK 241 (243)
Q Consensus 219 ~g~~~~~v~~v~ll~~llg~~~~ 241 (243)
+|.+.++++++.++-.++-|+|+
T Consensus 51 ~~~~~~~~~~~w~~~A~~ly~~R 73 (103)
T PF11027_consen 51 GGNSMFMMMMLWMVLAMALYLLR 73 (103)
T ss_pred CCccHHHHHHHHHHHHHHHHHcC
Confidence 45667777777777777777764
No 314
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.00 E-value=2.6e+02 Score=21.90 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=13.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQ 205 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~ 205 (243)
.+.++.++...|+++...+.++...|+.
T Consensus 7 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~ 34 (140)
T PRK03947 7 ELEELAAQLQALQAQIEALQQQLEELQA 34 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555444443
No 315
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=20.92 E-value=95 Score=20.18 Aligned_cols=17 Identities=18% Similarity=0.466 Sum_probs=8.9
Q ss_pred HHHHHHHHHHH--HHHhcc
Q 026107 226 VVIVGFIGIIL--GYLMKK 242 (243)
Q Consensus 226 v~~v~ll~~ll--g~~~~~ 242 (243)
.+.+|+++||+ ||++.+
T Consensus 18 gltv~f~~~L~PagWVLsh 36 (44)
T PF02285_consen 18 GLTVCFVTFLGPAGWVLSH 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 34555555554 566543
No 316
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=20.79 E-value=33 Score=26.62 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q 026107 195 SVIQINNKLQQELE 208 (243)
Q Consensus 195 ~~~~q~~~l~~e~~ 208 (243)
.+..+...|++++.
T Consensus 24 ~l~~el~~L~~~l~ 37 (118)
T PF08286_consen 24 SLQSELEELKEELE 37 (118)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333443333
No 317
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=20.78 E-value=23 Score=26.67 Aligned_cols=20 Identities=15% Similarity=0.454 Sum_probs=14.4
Q ss_pred cHHHHHHHHHHHHHHHHHhc
Q 026107 222 PFIYVVIVGFIGIILGYLMK 241 (243)
Q Consensus 222 ~~~~v~~v~ll~~llg~~~~ 241 (243)
|++|.+=.||=+.+||||++
T Consensus 66 SLLFslQaaiGa~IIgY~lG 85 (97)
T COG1930 66 SLLFSLQAAIGAGIIGYFLG 85 (97)
T ss_pred HHHHHHHHHhcceeeeeeee
Confidence 46777777777777777765
No 318
>PRK00846 hypothetical protein; Provisional
Probab=20.72 E-value=3e+02 Score=19.96 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=23.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
-+.+++..+.+...+.+.+.++.+.|.+++..++
T Consensus 28 tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 28 ALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666777777777777777777777666554
No 319
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=20.70 E-value=1.1e+02 Score=20.67 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=12.6
Q ss_pred eeEEEEEEcCCCCeEEEEE
Q 026107 25 ISCSLQLSNKTDNYVAFKV 43 (243)
Q Consensus 25 ~~~~l~L~N~s~~~VaFKV 43 (243)
+...-++...+...||||+
T Consensus 53 i~~v~~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 53 ISTVQKTDSSSGNKVAFKI 71 (71)
T ss_pred EEEEEEeecCCCeEEEEEC
Confidence 4444445556668999996
No 320
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=20.69 E-value=2.3e+02 Score=22.92 Aligned_cols=29 Identities=38% Similarity=0.455 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 183 RALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 183 ~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
.+.|..|++++..+..+++.|..++..++
T Consensus 51 k~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 51 KAEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555444444333
No 321
>PRK04406 hypothetical protein; Provisional
Probab=20.61 E-value=2.8e+02 Score=19.88 Aligned_cols=34 Identities=6% Similarity=-0.031 Sum_probs=22.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQELELL 210 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l 210 (243)
.-+.+++..|.....+++.+.++.+.|.+++..+
T Consensus 25 ~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 25 QTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455667777777777777777777776666543
No 322
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=20.61 E-value=3.2e+02 Score=19.30 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 181 EARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 181 e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
++..+|-.+..++-.|+.++..+-.+...++
T Consensus 4 ~lR~~ID~ID~~ii~LL~~R~~~~~~i~~~K 34 (74)
T TIGR01808 4 TLREEIDRLDAEILALVKRRAEISQAIGKAR 34 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 323
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=20.60 E-value=4.5e+02 Score=23.76 Aligned_cols=22 Identities=14% Similarity=0.537 Sum_probs=10.3
Q ss_pred CccHHHHHHHHHHHHHHHHHhcc
Q 026107 220 GLPFIYVVIVGFIGIILGYLMKK 242 (243)
Q Consensus 220 g~~~~~v~~v~ll~~llg~~~~~ 242 (243)
||++.. ++++++++++.|+|+|
T Consensus 297 Gy~~~l-~~m~~~~~~~~~~frr 318 (322)
T COG0598 297 GYPIAL-ILMLLLALLLYLYFRR 318 (322)
T ss_pred cHHHHH-HHHHHHHHHHHHHHHh
Confidence 443333 4444445555555554
No 324
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=20.60 E-value=2.1e+02 Score=26.09 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 184 ALISKLTEEKNSVIQINNKLQQEL 207 (243)
Q Consensus 184 ~~i~~L~~e~~~~~~q~~~l~~e~ 207 (243)
.+...|++|++.+++|++.++.++
T Consensus 39 ~~~~~lr~e~~~l~~~~~~~~~~~ 62 (308)
T PF11382_consen 39 DQFDSLREENDELRAELDALQAQL 62 (308)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 325
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=20.59 E-value=1.5e+02 Score=27.06 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=16.8
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKL 203 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l 203 (243)
.++.+..++..+...|++|++++..+++..
T Consensus 36 ~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~ 65 (308)
T PF11382_consen 36 SLEDQFDSLREENDELRAELDALQAQLNAA 65 (308)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666665555443
No 326
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=20.56 E-value=88 Score=22.20 Aligned_cols=22 Identities=9% Similarity=0.347 Sum_probs=14.0
Q ss_pred CccHHHHHHHHHHHHHHHHHhc
Q 026107 220 GLPFIYVVIVGFIGIILGYLMK 241 (243)
Q Consensus 220 g~~~~~v~~v~ll~~llg~~~~ 241 (243)
|.-++.++.|.|++++.+|+|+
T Consensus 8 GviLliaitVilaavv~~~~~~ 29 (80)
T PF07790_consen 8 GVILLIAITVILAAVVGAFVFG 29 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4445666667777777766664
No 327
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=20.46 E-value=2.1e+02 Score=24.03 Aligned_cols=23 Identities=39% Similarity=0.440 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026107 186 ISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 186 i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
|..|.++.....+-++.|++|+.
T Consensus 132 ~~~l~~~l~ek~k~~e~l~DE~~ 154 (194)
T PF08614_consen 132 IKDLEEELKEKNKANEILQDELQ 154 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444
No 328
>PHA00024 IX minor coat protein
Probab=20.39 E-value=1.1e+02 Score=18.63 Aligned_cols=16 Identities=25% Similarity=0.193 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHhc
Q 026107 226 VVIVGFIGIILGYLMK 241 (243)
Q Consensus 226 v~~v~ll~~llg~~~~ 241 (243)
++...+.|+++||.++
T Consensus 4 ~l~~ffgA~ilG~~l~ 19 (33)
T PHA00024 4 YLGYFFGAYILGWALF 19 (33)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455566677777654
No 329
>PHA03385 IX capsid protein IX,hexon associated protein IX; Provisional
Probab=20.34 E-value=1.6e+02 Score=23.52 Aligned_cols=27 Identities=26% Similarity=0.259 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 187 SKLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 187 ~~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
..|-.++..+.||...|.++++.|+.+
T Consensus 103 ~~llaqLealsqqL~~ls~qv~~L~~~ 129 (135)
T PHA03385 103 LVLLAQLEALSQQLQELSQQVAQLREQ 129 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334444455666666666666666654
No 330
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=20.33 E-value=1.1e+02 Score=20.47 Aligned_cols=14 Identities=21% Similarity=0.657 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHH
Q 026107 223 FIYVVIVGFIGIIL 236 (243)
Q Consensus 223 ~~~v~~v~ll~~ll 236 (243)
+.++.+++++|+++
T Consensus 19 Li~A~vlfi~Gi~i 32 (50)
T PF02038_consen 19 LIFAGVLFILGILI 32 (50)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 55667777777765
No 331
>PF05101 VirB3: Type IV secretory pathway, VirB3-like protein; InterPro: IPR007792 This entry represents type IV secretion system proteins VirB3, TrbD and AvhB. Type IV secretion systems are found in plant and animal pathogens, as well as in symbiotic bacteria. The tumour-inducing (Ti) plasmid of Rhizobium radiobacter (Agrobacterium tumefaciens) encodes two DNA transfer systems: VirB and Trb, where the virB operon is required for the transfer DNA to the plant host, and the trb system is required for the conjugal transfer of the Ti plasmid between cells of Agrobacterium [, ]. In addition, VirB3 is found associated with bacterial inner and outer membranes and assists T pilus formation as an assembly factor []. The conjugal transfer protein TrbD contains a nucleotide binding motif and may provide energy for the export of DNA or the export of other Trb proteins []. This entry also includes avhB (Agrobacterium virulence homologue virB), which is most similar to the VirB type IV secretion system of Bartonella henselae (Rochalimaea henselae) [].
Probab=20.30 E-value=1.2e+02 Score=21.85 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=15.9
Q ss_pred CCccHHHHHHHHHHHHHHHHHh
Q 026107 219 SGLPFIYVVIVGFIGIILGYLM 240 (243)
Q Consensus 219 ~g~~~~~v~~v~ll~~llg~~~ 240 (243)
.|+|...+++.++++++++...
T Consensus 20 ~Gvp~~~~~~~~~~~~~l~~~~ 41 (89)
T PF05101_consen 20 LGVPREPFILNLGLAFLLFLII 41 (89)
T ss_pred cCCcHHHHHHHHHHHHHHHHHH
Confidence 6999877777777777766554
No 332
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=20.24 E-value=65 Score=23.65 Aligned_cols=21 Identities=10% Similarity=0.211 Sum_probs=17.0
Q ss_pred cHHHHHHHHHHHHHHHHHhcc
Q 026107 222 PFIYVVIVGFIGIILGYLMKK 242 (243)
Q Consensus 222 ~~~~v~~v~ll~~llg~~~~~ 242 (243)
+-...+=++..+++.|||++.
T Consensus 54 s~~~La~L~~~~mm~GYfLr~ 74 (86)
T PF05542_consen 54 SRENLAQLLAWSMMTGYFLRN 74 (86)
T ss_pred CHHHHHHHHHHHHHHhHHHHH
Confidence 346677888889999999974
No 333
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=20.14 E-value=2.3e+02 Score=24.81 Aligned_cols=39 Identities=28% Similarity=0.346 Sum_probs=27.4
Q ss_pred EEEEEcCCCCeEEEE-EeecCCCcEEEeCCceeeCCCCEEEEEE
Q 026107 28 SLQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGVVLPRSTCDVIV 70 (243)
Q Consensus 28 ~l~L~N~s~~~VaFK-VKTT~p~~Y~VrP~~GiI~P~~s~~V~I 70 (243)
.|++.|+|..+|.|. ++- ..+. + ...+.|.|.++..+.+
T Consensus 163 ~l~v~NpTPyyvtl~~l~v-~~~~--~-~~~~miaPfs~~~~~~ 202 (234)
T PRK15192 163 GATVRNPTPYYVTLFLLRA-NERA--Q-DNAGVVAPFATRQTDW 202 (234)
T ss_pred EEEEECCCCcEEEEEeEEE-cCcc--c-CCCceECCCCccEEec
Confidence 499999999999885 333 2222 2 2356899999887765
No 334
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=20.06 E-value=2.4e+02 Score=24.43 Aligned_cols=39 Identities=23% Similarity=0.443 Sum_probs=28.4
Q ss_pred EEEEEcCCCCeEEEE-EeecCCCcEEEeCCceeeCCCCEEEEEE
Q 026107 28 SLQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGVVLPRSTCDVIV 70 (243)
Q Consensus 28 ~l~L~N~s~~~VaFK-VKTT~p~~Y~VrP~~GiI~P~~s~~V~I 70 (243)
.|++.|+|..+|.|- ++... +. +. +.|.|.|+++..+.+
T Consensus 158 ~l~v~NptPyyitl~~l~~~~-~~--~~-~~~mI~P~s~~~~~~ 197 (226)
T PRK15295 158 VITVNNPTPYYMNFASVTLNS-HE--VK-SATFVPPKSSASFKL 197 (226)
T ss_pred EEEEECCCceEEEEEEEEECC-cc--cC-CCceECCCCccEEEc
Confidence 599999999999875 55432 22 22 358899999988764
No 335
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=20.00 E-value=1.2e+02 Score=20.23 Aligned_cols=18 Identities=17% Similarity=0.574 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 026107 223 FIYVVIVGFIGIILGYLM 240 (243)
Q Consensus 223 ~~~v~~v~ll~~llg~~~ 240 (243)
..++++++.++..+|+.+
T Consensus 32 tl~i~~~~~iG~~iG~~~ 49 (51)
T PF10031_consen 32 TLFILLFAAIGYYIGKYL 49 (51)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345555556666666554
Done!