Query 026107
Match_columns 243
No_of_seqs 215 out of 737
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 05:46:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wic_A Hypothetical protein ri 100.0 5.5E-38 1.9E-42 256.5 12.9 135 4-143 15-152 (152)
2 2cri_A Vesicle-associated memb 100.0 8.3E-37 2.8E-41 248.2 18.9 128 1-132 8-136 (147)
3 1z9l_A Vesicle-associated memb 100.0 3.6E-36 1.2E-40 239.0 17.3 123 1-127 4-127 (128)
4 1msp_A MSP, major sperm protei 100.0 1.9E-32 6.4E-37 217.2 17.1 119 5-127 6-125 (126)
5 1row_A SSP-19, MSP-domain prot 100.0 1.7E-29 5.9E-34 195.3 13.9 104 8-125 3-106 (109)
6 1m1s_A WR4; structural genomic 100.0 1.9E-28 6.7E-33 190.9 15.5 106 6-125 9-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.4 1.9E-06 6.3E-11 66.7 9.1 75 12-92 29-104 (122)
8 2e6j_A Hydin protein; PAPD, st 98.1 1.3E-05 4.5E-10 60.3 8.0 72 4-75 6-81 (112)
9 3qbt_B Inositol polyphosphate 98.0 3.4E-05 1.1E-09 61.3 10.1 69 6-74 25-100 (140)
10 3qis_A Inositol polyphosphate 97.5 0.00041 1.4E-08 63.3 10.1 70 6-75 28-104 (366)
11 2qsv_A Uncharacterized protein 96.5 0.01 3.5E-07 50.0 8.8 69 7-76 2-71 (220)
12 2qsv_A Uncharacterized protein 96.0 0.029 9.9E-07 47.1 8.8 67 6-75 118-186 (220)
13 3q48_A Chaperone CUPB2; IG fol 94.3 0.83 2.9E-05 39.4 13.0 109 7-129 29-147 (257)
14 2co7_B SAFB chaperone, putativ 92.7 1.2 3.9E-05 37.5 10.9 84 7-94 13-101 (221)
15 2xg5_A PAPD, chaperone protein 92.2 1.9 6.4E-05 36.1 11.6 108 8-129 2-118 (218)
16 4djm_A DRAB; chaperone, PILI; 91.8 1.4 5E-05 37.5 10.6 83 7-93 23-110 (239)
17 4ay0_A Chaperone protein CAF1M 91.5 5.1 0.00017 33.5 13.5 110 7-130 13-129 (218)
18 1klf_A FIMC chaperone, chapero 91.2 2.1 7.2E-05 35.5 10.8 83 8-94 2-91 (205)
19 1l4i_A SFAE protein; periplasm 90.1 3.2 0.00011 34.4 10.9 111 8-130 2-119 (206)
20 3gfu_C Chaperone protein FAEE; 88.1 11 0.00037 31.7 14.0 83 8-94 2-91 (224)
21 1nlw_A MAD protein, MAX dimeri 87.0 1.3 4.5E-05 31.3 5.5 37 178-214 41-77 (80)
22 1yew_A Particulate methane mon 86.2 4.7 0.00016 36.5 9.9 68 6-75 248-337 (382)
23 2jee_A YIIU; FTSZ, septum, coi 84.8 1.6 5.5E-05 31.1 5.0 33 174-206 10-42 (81)
24 1nkp_B MAX protein, MYC proto- 84.4 2.4 8.1E-05 29.9 5.8 37 178-214 41-77 (83)
25 2r39_A FIXG-related protein; s 84.2 6 0.0002 29.5 8.4 52 24-75 32-84 (118)
26 3rfr_A PMOB; membrane, oxidore 83.4 4.7 0.00016 36.8 8.6 67 6-75 282-369 (419)
27 2jee_A YIIU; FTSZ, septum, coi 80.6 2 6.7E-05 30.6 4.1 37 172-208 29-65 (81)
28 1t2k_D Cyclic-AMP-dependent tr 79.5 4.3 0.00015 26.9 5.4 34 179-212 24-57 (61)
29 1ci6_A Transcription factor AT 77.0 5.3 0.00018 26.8 5.3 35 178-212 24-58 (63)
30 2wt7_A Proto-oncogene protein 76.2 6.1 0.00021 26.4 5.4 35 178-212 24-58 (63)
31 1hjb_A Ccaat/enhancer binding 75.9 4.9 0.00017 28.9 5.1 37 178-214 37-73 (87)
32 2oqq_A Transcription factor HY 75.4 2.7 9.4E-05 26.0 3.1 31 175-205 8-38 (42)
33 1gd2_E Transcription factor PA 75.4 1.6 5.4E-05 30.2 2.3 34 178-211 30-63 (70)
34 1nkp_A C-MYC, MYC proto-oncoge 75.4 6.9 0.00024 28.0 5.8 33 179-211 47-79 (88)
35 1jnm_A Proto-oncogene C-JUN; B 73.3 3.1 0.00011 27.7 3.3 35 178-212 23-57 (62)
36 1am9_A Srebp-1A, protein (ster 72.1 8.4 0.00029 27.0 5.6 32 178-209 44-75 (82)
37 2yy0_A C-MYC-binding protein; 72.1 8.6 0.00029 25.0 5.1 24 189-212 24-47 (53)
38 1gd2_E Transcription factor PA 71.5 5.7 0.00019 27.4 4.4 39 172-210 31-69 (70)
39 2dgc_A Protein (GCN4); basic d 71.2 4.1 0.00014 27.4 3.5 28 185-212 31-58 (63)
40 4dzn_A Coiled-coil peptide CC- 70.8 12 0.00041 21.2 4.8 26 186-211 4-29 (33)
41 1deb_A APC protein, adenomatou 70.6 14 0.00048 23.8 5.6 31 177-207 3-33 (54)
42 3zy7_A AP-1 complex subunit ga 70.6 9.3 0.00032 28.9 5.9 82 24-109 30-121 (122)
43 1hlo_A Protein (transcription 70.3 5.4 0.00019 27.8 4.2 28 179-206 52-79 (80)
44 1gu4_A CAAT/enhancer binding p 69.5 9 0.00031 26.9 5.1 35 179-213 38-72 (78)
45 3c3g_A Alpha/beta peptide with 68.8 12 0.00042 21.8 4.6 26 188-213 4-29 (33)
46 3m9b_A Proteasome-associated A 68.0 2.6 8.9E-05 36.2 2.4 38 175-212 59-96 (251)
47 1dh3_A Transcription factor CR 67.8 12 0.00041 24.3 5.2 29 184-212 22-50 (55)
48 2w6a_A ARF GTPase-activating p 67.7 9.5 0.00032 25.4 4.5 34 178-211 28-61 (63)
49 3c3f_A Alpha/beta peptide with 66.7 14 0.00049 21.6 4.6 26 188-213 5-30 (34)
50 4h22_A Leucine-rich repeat fli 66.6 13 0.00046 27.4 5.7 32 174-205 6-37 (103)
51 3m48_A General control protein 66.1 15 0.00052 21.5 4.7 26 188-213 4-29 (33)
52 3m91_A Proteasome-associated A 65.6 9 0.00031 24.7 4.1 34 177-210 16-49 (51)
53 3mq7_A Bone marrow stromal ant 65.2 11 0.00039 28.5 5.1 28 186-213 73-100 (121)
54 1nkp_A C-MYC, MYC proto-oncoge 65.1 10 0.00035 27.1 4.8 34 178-211 53-86 (88)
55 1uo4_A General control protein 64.5 18 0.00063 21.2 4.8 27 188-214 5-31 (34)
56 2oxj_A Hybrid alpha/beta pepti 63.6 20 0.00068 21.0 5.1 26 188-213 5-30 (34)
57 2akf_A Coronin-1A; coiled coil 63.2 8.4 0.00029 21.9 3.1 24 188-211 3-26 (32)
58 1dh3_A Transcription factor CR 62.6 7 0.00024 25.5 3.2 30 178-207 23-52 (55)
59 2bni_A General control protein 62.0 18 0.00061 21.3 4.5 26 188-213 5-30 (34)
60 1nkp_B MAX protein, MYC proto- 61.6 9.7 0.00033 26.6 4.1 32 179-210 49-80 (83)
61 1fmh_A General control protein 60.7 15 0.00052 20.8 3.9 26 186-211 3-28 (33)
62 2dgc_A Protein (GCN4); basic d 60.6 17 0.00058 24.3 4.9 32 177-208 30-61 (63)
63 2w6b_A RHO guanine nucleotide 59.5 30 0.001 22.5 5.7 27 182-208 8-34 (56)
64 2wt7_B Transcription factor MA 59.3 22 0.00074 25.7 5.6 32 181-212 52-83 (90)
65 1nlw_A MAD protein, MAX dimeri 58.9 14 0.00047 25.9 4.4 31 179-209 49-79 (80)
66 4dzn_A Coiled-coil peptide CC- 58.5 23 0.00078 20.0 4.4 27 179-205 4-30 (33)
67 1go4_E MAD1 (mitotic arrest de 58.2 19 0.00067 26.4 5.3 30 178-207 13-42 (100)
68 1kd8_B GABH BLL, GCN4 acid bas 57.6 25 0.00086 20.9 4.6 24 189-212 6-29 (36)
69 1kd8_A GABH AIV, GCN4 acid bas 57.5 23 0.00079 21.0 4.5 24 189-212 6-29 (36)
70 1t2k_D Cyclic-AMP-dependent tr 57.2 9.5 0.00033 25.1 3.2 28 185-212 23-50 (61)
71 3hd7_A Vesicle-associated memb 57.1 49 0.0017 23.5 7.5 9 231-239 81-89 (91)
72 4fm3_A Uncharacterized hypothe 56.9 10 0.00036 27.8 3.6 35 173-207 60-94 (98)
73 2wuj_A Septum site-determining 56.7 17 0.00059 23.7 4.4 31 181-211 24-54 (57)
74 3hnw_A Uncharacterized protein 56.6 11 0.00037 29.3 3.9 16 178-193 83-98 (138)
75 3w03_C DNA repair protein XRCC 55.1 24 0.0008 28.8 5.8 34 179-212 147-180 (184)
76 2wt7_A Proto-oncogene protein 54.6 28 0.00097 23.0 5.3 32 182-213 21-52 (63)
77 1dip_A Delta-sleep-inducing pe 54.1 23 0.0008 24.6 4.8 29 176-204 14-42 (78)
78 2xzz_A Protein-glutamine gamma 53.5 61 0.0021 23.5 7.7 54 22-76 19-75 (102)
79 1uii_A Geminin; human, DNA rep 52.3 34 0.0012 24.2 5.6 34 179-212 41-74 (83)
80 2hy6_A General control protein 52.0 33 0.0011 20.1 4.5 25 189-213 6-30 (34)
81 3m91_A Proteasome-associated A 51.8 40 0.0014 21.6 5.4 37 177-213 9-45 (51)
82 2l5g_A GPS2 protein, G protein 51.4 28 0.00096 20.9 4.2 22 179-200 10-31 (38)
83 2wuj_A Septum site-determining 51.3 14 0.00048 24.1 3.2 31 176-206 26-56 (57)
84 3q0x_A Centriole protein; cent 50.6 14 0.00049 31.1 4.0 43 172-214 173-215 (228)
85 1jnm_A Proto-oncogene C-JUN; B 50.3 37 0.0013 22.3 5.3 31 183-213 21-51 (62)
86 2wq1_A General control protein 50.2 36 0.0012 19.8 4.6 25 189-213 5-29 (33)
87 2yy0_A C-MYC-binding protein; 50.1 30 0.001 22.3 4.6 27 181-207 23-49 (53)
88 2xdj_A Uncharacterized protein 50.1 42 0.0014 23.7 5.8 32 180-211 23-54 (83)
89 4emc_A Monopolin complex subun 50.0 18 0.00062 29.6 4.3 23 189-211 32-54 (190)
90 4e61_A Protein BIM1; EB1-like 49.9 28 0.00095 25.9 5.0 19 179-197 13-31 (106)
91 2wt7_B Transcription factor MA 49.2 17 0.00058 26.2 3.6 35 174-208 52-86 (90)
92 2w6a_A ARF GTPase-activating p 49.0 31 0.0011 22.9 4.5 39 174-212 17-55 (63)
93 1go4_E MAD1 (mitotic arrest de 48.8 30 0.001 25.4 5.0 32 183-214 11-42 (100)
94 2r2v_A GCN4 leucine zipper; co 46.9 42 0.0014 19.7 4.6 25 189-213 6-30 (34)
95 3efg_A Protein SLYX homolog; x 46.7 28 0.00095 24.3 4.4 42 173-214 17-58 (78)
96 3he5_A Synzip1; heterodimeric 45.3 51 0.0017 20.2 5.8 34 180-213 6-46 (49)
97 2wg5_A General control protein 45.2 26 0.0009 25.8 4.3 26 187-212 10-35 (109)
98 2l5g_B Putative uncharacterize 45.0 52 0.0018 20.2 5.2 32 181-212 6-37 (42)
99 3idu_A Uncharacterized protein 44.9 64 0.0022 24.4 6.6 68 22-98 32-100 (127)
100 1ci6_A Transcription factor AT 44.6 51 0.0017 21.8 5.3 26 186-211 25-50 (63)
101 2ks1_B Epidermal growth factor 44.3 16 0.00056 22.8 2.5 17 226-242 21-37 (44)
102 1a93_A Coiled coil, LZ, MYC pr 43.6 45 0.0015 19.6 4.2 26 185-210 8-33 (34)
103 3u1c_A Tropomyosin alpha-1 cha 43.0 27 0.00093 25.4 4.0 40 172-211 25-64 (101)
104 1gyu_A Adapter-related protein 42.7 74 0.0025 24.4 6.8 67 24-94 48-120 (140)
105 3mq7_A Bone marrow stromal ant 42.6 55 0.0019 24.7 5.6 34 178-211 72-105 (121)
106 2zvf_A Alanyl-tRNA synthetase; 42.5 32 0.0011 26.7 4.8 37 174-210 22-58 (171)
107 2aze_B Transcription factor E2 42.5 50 0.0017 24.3 5.5 36 176-211 5-40 (106)
108 3s9g_A Protein hexim1; cyclin 42.0 42 0.0014 24.6 4.8 28 185-212 66-93 (104)
109 3sja_C Golgi to ER traffic pro 41.8 56 0.0019 22.1 5.1 36 178-213 7-54 (65)
110 1ic2_A Tropomyosin alpha chain 41.7 31 0.0011 23.9 4.0 39 173-211 23-61 (81)
111 1iu1_A Gamma1-adaptin; coated 41.4 95 0.0032 23.9 7.2 67 24-94 54-126 (146)
112 1jcd_A Major outer membrane li 40.7 38 0.0013 21.8 4.0 33 176-208 10-42 (52)
113 4emc_A Monopolin complex subun 40.6 56 0.0019 26.7 5.8 25 178-202 35-59 (190)
114 3s9g_A Protein hexim1; cyclin 40.6 29 0.00098 25.5 3.7 21 178-198 38-58 (104)
115 1a93_B MAX protein, coiled coi 40.6 50 0.0017 19.4 4.1 19 189-207 12-30 (34)
116 2huh_A Putative DNA mismatch r 40.1 47 0.0016 26.1 5.2 66 26-99 29-95 (147)
117 3w03_C DNA repair protein XRCC 39.5 39 0.0013 27.5 4.8 32 177-208 152-183 (184)
118 3e38_A Two-domain protein cont 39.5 42 0.0014 29.7 5.5 64 27-97 270-333 (343)
119 3nmd_A CGMP dependent protein 38.7 44 0.0015 23.1 4.2 29 183-211 39-67 (72)
120 2l2t_A Receptor tyrosine-prote 38.4 23 0.00079 22.1 2.5 17 226-242 20-36 (44)
121 3hn9_A Lamin-B1; structural ge 37.6 52 0.0018 24.8 5.0 41 27-68 25-71 (123)
122 3s4r_A Vimentin; alpha-helix, 37.4 68 0.0023 22.9 5.4 34 179-212 58-91 (93)
123 1jcd_A Major outer membrane li 36.0 75 0.0025 20.4 4.8 31 178-208 5-35 (52)
124 4etp_A Kinesin-like protein KA 36.0 54 0.0018 29.7 5.7 22 178-199 11-32 (403)
125 2v66_B Nuclear distribution pr 35.9 64 0.0022 24.1 5.1 34 172-205 19-56 (111)
126 3i00_A HIP-I, huntingtin-inter 35.8 51 0.0017 24.9 4.7 19 195-213 65-83 (120)
127 1uii_A Geminin; human, DNA rep 35.5 56 0.0019 23.1 4.5 26 180-205 49-74 (83)
128 2kes_A Synphilin-1; synphillin 35.2 80 0.0027 19.5 5.4 32 179-210 6-37 (48)
129 3m9b_A Proteasome-associated A 34.6 38 0.0013 28.9 4.1 39 176-214 53-91 (251)
130 3sjb_C Golgi to ER traffic pro 34.2 76 0.0026 22.9 5.1 35 178-212 24-70 (93)
131 2oqq_A Transcription factor HY 33.9 83 0.0028 19.3 5.7 33 180-212 6-38 (42)
132 2z5i_A TM, general control pro 33.9 76 0.0026 20.2 4.6 33 177-209 12-44 (52)
133 3tnu_B Keratin, type II cytosk 33.4 80 0.0027 23.7 5.5 34 175-208 34-67 (129)
134 2eqb_B RAB guanine nucleotide 33.1 1.1E+02 0.0037 22.2 5.8 13 198-210 47-59 (97)
135 4etp_A Kinesin-like protein KA 33.1 39 0.0013 30.7 4.2 24 174-197 14-37 (403)
136 1wm3_A Ubiquitin-like protein 33.0 36 0.0012 22.7 3.1 21 28-48 3-23 (72)
137 1gu4_A CAAT/enhancer binding p 32.9 1.2E+02 0.0039 21.1 5.8 29 185-213 37-65 (78)
138 3vlc_E Golgi to ER traffic pro 32.6 50 0.0017 24.0 3.9 39 177-215 30-80 (94)
139 1wlq_A Geminin; coiled-coil; 2 32.4 96 0.0033 21.9 5.2 19 185-203 46-64 (83)
140 3u59_A Tropomyosin beta chain; 32.1 50 0.0017 23.8 4.0 37 173-209 26-62 (101)
141 2eqb_B RAB guanine nucleotide 31.9 45 0.0015 24.3 3.6 30 178-207 6-35 (97)
142 1hjb_A Ccaat/enhancer binding 31.7 1.2E+02 0.004 21.5 5.8 23 190-212 42-64 (87)
143 1jb0_X Photosystem I subunit P 31.6 51 0.0017 19.3 3.1 20 224-243 15-34 (35)
144 3kin_B Kinesin heavy chain; mo 31.3 76 0.0026 23.6 5.0 32 180-211 85-116 (117)
145 3vta_A Cucumisin; subtilisin-l 31.0 2E+02 0.0067 27.3 9.1 51 24-74 538-591 (621)
146 4ani_A Protein GRPE; chaperone 30.7 90 0.0031 25.9 5.8 31 181-211 63-93 (213)
147 1dip_A Delta-sleep-inducing pe 30.6 59 0.002 22.5 3.8 28 186-213 17-44 (78)
148 3v86_A De novo design helix; c 30.5 68 0.0023 17.3 3.7 19 189-207 5-23 (27)
149 3q4f_C DNA repair protein XRCC 30.4 57 0.002 26.5 4.3 27 180-206 157-183 (186)
150 2iaa_C Azurin; quinoprotein, t 30.2 65 0.0022 24.2 4.5 63 7-72 11-98 (128)
151 3trt_A Vimentin; cytoskeleton, 30.2 56 0.0019 22.1 3.8 26 186-211 51-76 (77)
152 3ndz_E Endoglucanase D; cellot 30.1 1.3E+02 0.0046 21.8 6.1 49 25-73 17-86 (107)
153 3tnu_A Keratin, type I cytoske 29.9 89 0.0031 23.5 5.3 30 176-205 37-66 (131)
154 1wt6_A Myotonin-protein kinase 29.6 1.1E+02 0.0037 21.5 5.1 16 196-211 57-72 (81)
155 3q8t_A Beclin-1; autophagy, AT 28.8 1.3E+02 0.0046 21.4 5.8 29 180-208 21-49 (96)
156 2io0_B Small ubiquitin-related 28.6 51 0.0017 23.3 3.4 23 26-48 5-27 (91)
157 1fxk_C Protein (prefoldin); ar 28.6 89 0.003 23.2 5.0 38 175-212 93-130 (133)
158 2zxx_A Geminin; coiled-coil, c 28.5 87 0.003 21.9 4.5 26 181-206 38-63 (79)
159 1fzc_C Fibrin; blood coagulati 27.7 78 0.0027 27.9 5.1 42 172-213 6-47 (319)
160 3swk_A Vimentin; cytoskeleton, 27.6 1.5E+02 0.0051 20.7 5.8 26 180-205 3-28 (86)
161 3cvf_A Homer-3, homer protein 27.5 95 0.0033 21.7 4.5 29 178-206 21-49 (79)
162 3jt0_A Lamin-B1; structural ge 27.1 94 0.0032 24.1 5.0 42 27-68 38-84 (144)
163 2ccw_A Azurin II, AZN-2; elect 27.0 71 0.0024 24.0 4.2 64 7-73 12-100 (129)
164 2wvr_A Geminin; DNA replicatio 26.8 1.1E+02 0.0039 25.1 5.6 24 181-204 119-142 (209)
165 3ra3_B P2F; coiled coil domain 26.8 35 0.0012 18.6 1.7 7 183-189 13-19 (28)
166 2fxo_A Myosin heavy chain, car 26.7 83 0.0028 23.6 4.5 38 175-212 81-118 (129)
167 2ls4_A High affinity copper up 32.7 14 0.00047 20.5 0.0 16 226-241 5-20 (26)
168 1use_A VAsp, vasodilator-stimu 26.6 1E+02 0.0034 19.2 4.0 14 180-193 18-31 (45)
169 3ra3_A P1C; coiled coil domain 26.4 43 0.0015 18.2 2.0 19 191-209 7-25 (28)
170 3fga_D Shugoshin-like 1; PP2A, 26.2 50 0.0017 20.7 2.5 20 176-195 23-42 (47)
171 3iyn_Q Protein IX, PIX, hexon- 25.8 68 0.0023 24.5 3.7 27 178-204 99-125 (140)
172 2xdj_A Uncharacterized protein 25.6 1.5E+02 0.0051 20.7 5.4 32 174-205 24-55 (83)
173 1c7s_A Beta-N-acetylhexosamini 25.3 1.3E+02 0.0043 30.2 6.7 49 24-72 39-109 (858)
174 1ifr_A Lamin A/C; immunoglobul 25.3 1.5E+02 0.0051 22.1 5.7 42 27-68 19-66 (121)
175 1l8d_A DNA double-strand break 25.3 1.5E+02 0.0052 21.1 5.7 36 176-211 9-44 (112)
176 3mud_A DNA repair protein XRCC 25.1 1.1E+02 0.0039 24.5 5.2 33 177-209 135-167 (175)
177 1wlq_A Geminin; coiled-coil; 2 24.9 88 0.003 22.1 4.0 36 178-213 32-67 (83)
178 3cve_A Homer protein homolog 1 24.7 1.2E+02 0.0041 20.8 4.5 26 178-203 15-40 (72)
179 3s4r_A Vimentin; alpha-helix, 24.6 1.9E+02 0.0065 20.5 6.0 36 177-212 9-44 (93)
180 4e61_A Protein BIM1; EB1-like 24.4 1.8E+02 0.0061 21.4 5.8 24 177-200 18-41 (106)
181 2jwa_A Receptor tyrosine-prote 24.1 45 0.0016 20.7 2.1 17 226-242 21-37 (44)
182 1yyc_A LEA protein, putative l 24.0 2.6E+02 0.009 22.1 7.3 50 24-73 63-118 (174)
183 2io1_B Small ubiquitin-related 23.7 70 0.0024 22.6 3.4 23 26-48 7-29 (94)
184 3vmx_A Voltage-gated hydrogen 23.7 1.4E+02 0.0049 18.8 5.3 7 205-211 32-38 (48)
185 2j5u_A MREC protein; bacterial 23.1 55 0.0019 27.7 3.2 19 174-192 23-41 (255)
186 1xo8_A AT1G01470; structural g 22.9 1.5E+02 0.0053 22.7 5.6 49 24-72 40-94 (151)
187 2j5u_A MREC protein; bacterial 22.9 82 0.0028 26.6 4.3 29 174-206 30-58 (255)
188 1s1c_X RHO-associated, coiled- 22.8 1.7E+02 0.0057 20.0 5.0 18 174-191 17-34 (71)
189 1fxk_C Protein (prefoldin); ar 22.8 1.8E+02 0.006 21.5 5.8 23 181-203 5-27 (133)
190 1v54_M VIIIB, IX, cytochrome C 22.7 52 0.0018 20.7 2.2 19 224-242 16-36 (46)
191 2d07_B Ubiquitin-like protein 22.5 76 0.0026 22.3 3.4 24 25-48 16-39 (93)
192 3u06_A Protein claret segregat 22.2 1.1E+02 0.0037 27.8 5.1 23 178-200 11-33 (412)
193 2v71_A Nuclear distribution pr 22.1 89 0.003 25.5 4.1 18 186-203 90-107 (189)
194 2wg5_A General control protein 22.0 86 0.0029 22.9 3.7 26 180-205 10-35 (109)
195 4ath_A MITF, microphthalmia-as 21.9 1.1E+02 0.0037 21.6 4.0 23 179-201 34-56 (83)
196 4hci_A Cupredoxin 1; structura 21.9 2E+02 0.0068 19.8 6.1 51 10-72 25-75 (100)
197 2jxx_A Nfatc2-interacting prot 21.9 1E+02 0.0035 22.1 4.0 27 22-48 21-48 (97)
198 1vf5_F Protein PET M; photosyn 21.8 73 0.0025 18.8 2.6 19 225-243 11-29 (35)
199 1bxv_A Plastocyanin; copper pr 21.6 1.2E+02 0.004 20.3 4.2 54 7-70 13-66 (91)
200 1klf_A FIMC chaperone, chapero 21.6 1.8E+02 0.0061 23.5 6.0 39 28-70 139-177 (205)
201 3u06_A Protein claret segregat 21.4 1.5E+02 0.005 26.9 5.9 26 174-199 14-39 (412)
202 3iv1_A Tumor susceptibility ge 21.2 1.1E+02 0.0036 21.4 3.7 32 179-210 41-72 (78)
203 3cvf_A Homer-3, homer protein 21.1 1E+02 0.0036 21.5 3.7 29 175-203 25-53 (79)
204 1lwu_C Fibrinogen gamma chain; 21.0 1.1E+02 0.0039 26.9 4.9 38 175-212 17-54 (323)
205 3kyd_D Small ubiquitin-related 21.0 82 0.0028 23.5 3.4 24 25-48 39-62 (115)
206 1p4u_A ADP-ribosylation factor 20.8 2.4E+02 0.0083 21.7 6.3 38 27-64 57-98 (153)
207 2d8d_A Aroag, phospho-2-dehydr 20.7 2.1E+02 0.0073 19.6 5.8 30 175-204 8-37 (90)
208 3viq_A SWI5-dependent recombin 20.5 1.4E+02 0.0047 22.5 4.6 15 180-194 10-24 (122)
209 3rmi_A Chorismate mutase prote 20.4 2.2E+02 0.0075 20.8 5.7 30 174-203 16-45 (114)
210 1l8d_A DNA double-strand break 20.0 2.4E+02 0.0081 20.0 5.8 31 177-207 71-101 (112)
No 1
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=100.00 E-value=5.5e-38 Score=256.54 Aligned_cols=135 Identities=30% Similarity=0.489 Sum_probs=122.4
Q ss_pred CCCceEEeCC-eeeecccCCCeeeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEeccCCCCCCCC
Q 026107 4 TGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDM 82 (243)
Q Consensus 4 ~~~ll~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p~~~ 82 (243)
.+++|.|+|. +|.|.++++++++|.|+|+|+++++||||||||+|++|||||+.|+|.||++++|.|+||++.+ .
T Consensus 15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~ 90 (152)
T 1wic_A 15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----V 90 (152)
T ss_dssp CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----C
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----C
Confidence 4579999997 9999999999999999999999999999999999999999999999999999999999999753 3
Q ss_pred CCCceEEEEEEEcC--CCCCcCCCchhhhcccCCCceeEEEeEEEEECCCCCCCCCCCCCCCC
Q 026107 83 QCKDKFLLQGVVAS--PGATAKDITPEMFNKEAGHHVEECKLRVLYVAPPRPPSPVHEGSEEG 143 (243)
Q Consensus 83 ~~kDKFlVqs~~v~--~~~~~~d~~~~~w~~~~~~~i~e~kL~v~~~~~~~~~s~~~~~~~e~ 143 (243)
+|+|||+||++.++ ++.+..|+ .++|++..+..++++||||+|+.+.+|+|++.++.++|
T Consensus 91 ~~kDKFlVqs~~v~~~~~~~~~d~-~~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g~~~~ 152 (152)
T 1wic_A 91 SAQDRFLIMAAEMEQSSGTGPAEL-SQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPSSG 152 (152)
T ss_dssp CSSCCEEEEEEECCSSCCCSHHHH-HHHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCSCC
T ss_pred CCCCEEEEEEEEcCCcCCCChhhH-HHHHhccCCCceEEEEEEEEECCCCCCCCccccCCCCC
Confidence 78999999999999 56556677 68999998889999999999999998888887776543
No 2
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=8.3e-37 Score=248.25 Aligned_cols=128 Identities=32% Similarity=0.617 Sum_probs=116.0
Q ss_pred CCCCCCceEEeCC-eeeecccCCCeeeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEeccCCCCC
Q 026107 1 MMSTGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP 79 (243)
Q Consensus 1 m~~~~~ll~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p 79 (243)
|-..+++|.|+|. +|.|.+|+++.+++.|+|+|+++++||||||||+|++|||||++|+|+||++++|.|+||++. .+
T Consensus 8 m~~~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~-~~ 86 (147)
T 2cri_A 8 MAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFD-YD 86 (147)
T ss_dssp CCCCCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCC-CC
T ss_pred cCCCCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCc-CC
Confidence 4445689999996 999999999999999999999999999999999999999999999999999999999999986 34
Q ss_pred CCCCCCceEEEEEEEcCCCCCcCCCchhhhcccCCCceeEEEeEEEEECCCCC
Q 026107 80 PDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAPPRP 132 (243)
Q Consensus 80 ~~~~~kDKFlVqs~~v~~~~~~~d~~~~~w~~~~~~~i~e~kL~v~~~~~~~~ 132 (243)
++.+|+|||+||++.++++.+ |+ .++|++..+..++++||||+|+.|.++
T Consensus 87 p~~~~kDKFlVqs~~~~~~~~--d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~ 136 (147)
T 2cri_A 87 PNEKSKHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFEMPNEN 136 (147)
T ss_dssp TTCCSCCCEEEEEEECCTTCC--CH-HHHHHHSCTTTCEEEEEEEEEECSCCS
T ss_pred ccccCCCEEEEEEEEcCCCcc--cH-HHHhhcCCCCceEEEEEEEEEecCCCC
Confidence 567899999999999998643 66 889999888899999999999988753
No 3
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=100.00 E-value=3.6e-36 Score=238.96 Aligned_cols=123 Identities=33% Similarity=0.626 Sum_probs=112.6
Q ss_pred CCCCCCceEEeCC-eeeecccCCCeeeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEeccCCCCC
Q 026107 1 MMSTGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP 79 (243)
Q Consensus 1 m~~~~~ll~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p 79 (243)
|-..+++|.|+|. +|.|.+|+++.+++.|+|+|+++++||||||||+|++|+|||++|+|+||++++|.|++|++.. +
T Consensus 4 m~~~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~~~~~-~ 82 (128)
T 1z9l_A 4 MAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDY-D 82 (128)
T ss_dssp CCSCCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEECCCCC-C
T ss_pred CCCCCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEECcCcC-C
Confidence 4456789999995 9999999999999999999999999999999999999999999999999999999999999863 4
Q ss_pred CCCCCCceEEEEEEEcCCCCCcCCCchhhhcccCCCceeEEEeEEEEE
Q 026107 80 PDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYV 127 (243)
Q Consensus 80 ~~~~~kDKFlVqs~~v~~~~~~~d~~~~~w~~~~~~~i~e~kL~v~~~ 127 (243)
++.+|+|||+||++.++++.+ |+ .++|++..+..++++||||+|.
T Consensus 83 p~~~~~dkF~V~s~~~~~~~~--~~-~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 83 PNEKSKHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp TTCCCCCEEEEEEEECCTTCS--CH-HHHHHSCCGGGCEEEEEEEEEE
T ss_pred cccccCCEEEEEEEECCCCcc--hH-HHHhhcCCCCceEEEEEEEEEe
Confidence 556899999999999998653 66 7999999889999999999996
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=100.00 E-value=1.9e-32 Score=217.23 Aligned_cols=119 Identities=20% Similarity=0.324 Sum_probs=105.2
Q ss_pred CCceEEeCC-eeeecccCCCeeeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEeccCCCCCCCCC
Q 026107 5 GELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQ 83 (243)
Q Consensus 5 ~~ll~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p~~~~ 83 (243)
...|.|+|. +|.|++|+++.+++.|+|+|+++++||||||||+|++|||||++|+|+||+++.|.|+||++.+.|++ .
T Consensus 6 ~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q~~~~~~~~-~ 84 (126)
T 1msp_A 6 PGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATED-L 84 (126)
T ss_dssp CCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEECCCCGGGSC-C
T ss_pred CCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEecCCCCCCCc-c
Confidence 468999996 99999999999999999999999999999999999999999999999999999999999998766655 3
Q ss_pred CCceEEEEEEEcCCCCCcCCCchhhhcccCCCceeEEEeEEEEE
Q 026107 84 CKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYV 127 (243)
Q Consensus 84 ~kDKFlVqs~~v~~~~~~~d~~~~~w~~~~~~~i~e~kL~v~~~ 127 (243)
.+|||+||++.++++.+ +|+..+ |...+ ..+..++|+|.|.
T Consensus 85 ~kDKf~Vq~~~~p~~~~-~~~~~~-wf~~d-~~~~~k~L~V~Yn 125 (126)
T 1msp_A 85 NNDRITIEWTNTPDGAA-KQFRRE-WFQGD-GMVRRKNLPIEYN 125 (126)
T ss_dssp SSCEEEEEEEECCTTCC-SSCCTH-HHHSS-SCCEEEEEEEEEE
T ss_pred CCCEEEEEEEECCCCcc-hhhhHH-hhcCC-CceEEEEEEEEec
Confidence 59999999999998864 578544 54443 3689999999996
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=1.7e-29 Score=195.34 Aligned_cols=104 Identities=24% Similarity=0.352 Sum_probs=90.7
Q ss_pred eEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEeccCCCCCCCCCCCce
Q 026107 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDK 87 (243)
Q Consensus 8 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p~~~~~kDK 87 (243)
|.|+|.+|.|.++. ..+.|+|+|+++++||||||||+|++|||||++|+|+||++++|.|++|+. + .++||
T Consensus 3 L~i~P~~l~F~~~~---~~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q~~---~---~~~dK 73 (109)
T 1row_A 3 LTADPPACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAG---A---PKEDK 73 (109)
T ss_dssp CEEESSSEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEECSC---C---CEEEE
T ss_pred EEEECCEeEEeCCC---CeEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCCCE
Confidence 89999999999874 479999999999999999999999999999999999999999999999985 2 37999
Q ss_pred EEEEEEEcCCCCCcCCCchhhhcccCCCceeEEEeEEE
Q 026107 88 FLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVL 125 (243)
Q Consensus 88 FlVqs~~v~~~~~~~d~~~~~w~~~~~~~i~e~kL~v~ 125 (243)
|+||++.++++. .|. .++|++..+ .++.+|++.
T Consensus 74 flvq~~~~~~~~--~d~-~~~fk~~~~--~g~~~i~l~ 106 (109)
T 1row_A 74 LVVHFASAPADA--TDA-QAAFVAVAP--AGTVTIPMS 106 (109)
T ss_dssp EEEEEEECCTTC--SCH-HHHHTTCCC--CEEEEEEEE
T ss_pred EEEEEEECCCCC--CCH-HHHhhcCCC--CceEEEEEE
Confidence 999999998764 365 889998654 456666654
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=1.9e-28 Score=190.95 Aligned_cols=106 Identities=24% Similarity=0.384 Sum_probs=93.5
Q ss_pred CceEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEeccCCCCCCCCCCC
Q 026107 6 ELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCK 85 (243)
Q Consensus 6 ~ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p~~~~~k 85 (243)
.++.++|.+|.|++. ..++.|+|+|+++.+||||||||+|++|||||++|+|+||++++|.|++|++ + .++
T Consensus 9 ~~~~~~p~~l~F~~~---gg~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q~~---~---~k~ 79 (116)
T 1m1s_A 9 SMINVDPPTGNYPAT---GGNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPG---P---PKE 79 (116)
T ss_dssp CSEEEESSEEEECTT---CEEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEECSC---C---SCE
T ss_pred eeeecCCCeEEEecC---CCEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCC
Confidence 578999999999875 3589999999999999999999999999999999999999999999999986 2 379
Q ss_pred ceEEEEEEEcCCCCCcCCCchhhhcccCCCceeEEEeEEE
Q 026107 86 DKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVL 125 (243)
Q Consensus 86 DKFlVqs~~v~~~~~~~d~~~~~w~~~~~~~i~e~kL~v~ 125 (243)
|||+||++.++++.. |. .++|++..+ .++.+|++.
T Consensus 80 DKflVq~~~~~~d~~--d~-~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 80 DKIVIQYAEVPAEET--DP-MAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp EEEEEEEEEECTTCC--CT-THHHHTTCC--CEEEEEEEE
T ss_pred CEEEEEEEECCCCCC--CH-HHHHhcCCC--CceEEEEEE
Confidence 999999999997543 55 789998654 577888764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=1.9e-06 Score=66.66 Aligned_cols=75 Identities=16% Similarity=0.299 Sum_probs=60.4
Q ss_pred CCeeeecc-cCCCeeeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEeccCCCCCCCCCCCceEEE
Q 026107 12 PQELQFPF-ELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLL 90 (243)
Q Consensus 12 P~eL~F~~-~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p~~~~~kDKFlV 90 (243)
|+.|.|.. +.+......+.|+|.++.++.|++++. .-|.|.|+.|.|.||+++.|.|++.|... ......+.|
T Consensus 29 p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F~P~~~----g~~~~~l~v 102 (122)
T 2ys4_A 29 PDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEFEPQSV----GDHSGRLIV 102 (122)
T ss_dssp CSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEECCSSS----BCCCCBCEE
T ss_pred CCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEEEcCCC----ccEEEEEEE
Confidence 66788855 456778899999999999999999974 47999999999999999999999988642 123455555
Q ss_pred EE
Q 026107 91 QG 92 (243)
Q Consensus 91 qs 92 (243)
..
T Consensus 103 ~~ 104 (122)
T 2ys4_A 103 CY 104 (122)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 8
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.06 E-value=1.3e-05 Score=60.34 Aligned_cols=72 Identities=14% Similarity=0.193 Sum_probs=60.4
Q ss_pred CCCceEEeCCeeeecc-cCCCeeeEEEEEEcCCCCeEEEEEeecCC---CcEEEeCCceeeCCCCEEEEEEEeccC
Q 026107 4 TGELLNIEPQELQFPF-ELRKQISCSLQLSNKTDNYVAFKVKTTNP---KKYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (243)
Q Consensus 4 ~~~ll~i~P~eL~F~~-~~~~~~~~~l~L~N~s~~~VaFKVKTT~p---~~Y~VrP~~GiI~P~~s~~V~Itlq~~ 75 (243)
.+..+.+++..|.|-. ..+...+..++|+|+++.++.|++..... ..|.+.|..|.|.||++..|.|++.+.
T Consensus 6 ~~P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~ 81 (112)
T 2e6j_A 6 SGPKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSI 81 (112)
T ss_dssp CCCSEEESCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCC
T ss_pred CCCEEEECcccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECC
Confidence 3467889998888844 45667889999999999999999964221 469999999999999999999999874
No 9
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=98.03 E-value=3.4e-05 Score=61.31 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=59.5
Q ss_pred CceEEeCCeeeecc-cCCCeeeEEEEEEcCCCCeEEEEEeec------CCCcEEEeCCceeeCCCCEEEEEEEecc
Q 026107 6 ELLNIEPQELQFPF-ELRKQISCSLQLSNKTDNYVAFKVKTT------NPKKYCVRPNTGVVLPRSTCDVIVTMQS 74 (243)
Q Consensus 6 ~ll~i~P~eL~F~~-~~~~~~~~~l~L~N~s~~~VaFKVKTT------~p~~Y~VrP~~GiI~P~~s~~V~Itlq~ 74 (243)
+.+.+++.+|.|-. .+....++.|+|+|++.-+.-|++... .+.-+.|.|..|.|.||+++.|.|++.-
T Consensus 25 P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 25 PSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp CCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 56888999999954 667788999999999999999999853 3456889999999999999999999864
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.53 E-value=0.00041 Score=63.28 Aligned_cols=70 Identities=19% Similarity=0.223 Sum_probs=59.4
Q ss_pred CceEEeCCeeeecc-cCCCeeeEEEEEEcCCCCeEEEEEeecCC------CcEEEeCCceeeCCCCEEEEEEEeccC
Q 026107 6 ELLNIEPQELQFPF-ELRKQISCSLQLSNKTDNYVAFKVKTTNP------KKYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (243)
Q Consensus 6 ~ll~i~P~eL~F~~-~~~~~~~~~l~L~N~s~~~VaFKVKTT~p------~~Y~VrP~~GiI~P~~s~~V~Itlq~~ 75 (243)
+.+.|++.++.|-. .+....+..|+|+|++.-+..|++..... .-+.|.|..|.|.||+++.|.|++...
T Consensus 28 P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~ 104 (366)
T 3qis_A 28 PSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVS 104 (366)
T ss_dssp CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBC
T ss_pred CeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEEC
Confidence 56889999999954 67888999999999999999999985422 226699999999999999999998654
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.52 E-value=0.01 Score=50.00 Aligned_cols=69 Identities=13% Similarity=0.190 Sum_probs=58.5
Q ss_pred ceEEeCCeeeecc-cCCCeeeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEeccCC
Q 026107 7 LLNIEPQELQFPF-ELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQK 76 (243)
Q Consensus 7 ll~i~P~eL~F~~-~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~ 76 (243)
-|+++|..+.|.- +-+......++++|+++.++-++.-.. |.....++..+.|.||++..|.|++.+..
T Consensus 2 ~i~~~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~~~~ 71 (220)
T 2qsv_A 2 PLQVSNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLAVPR 71 (220)
T ss_dssp CEEESCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEECCCT
T ss_pred ceEEecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEcchh
Confidence 3889999999965 335566789999999999999997644 88888899999999999999999997653
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.00 E-value=0.029 Score=47.15 Aligned_cols=67 Identities=12% Similarity=0.254 Sum_probs=56.3
Q ss_pred CceEEeCCeeeec-ccCCCeeeEEEEEEcCCCCeEEE-EEeecCCCcEEEeCCceeeCCCCEEEEEEEeccC
Q 026107 6 ELLNIEPQELQFP-FELRKQISCSLQLSNKTDNYVAF-KVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (243)
Q Consensus 6 ~ll~i~P~eL~F~-~~~~~~~~~~l~L~N~s~~~VaF-KVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~ 75 (243)
..+.++ ..+.|- .+ +....+.++|+|.++.++.+ +|+|++ +...+.++.+.|.||++..|.|++.+.
T Consensus 118 ~~i~~~-~~~dfG~i~-g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~~~~ 186 (220)
T 2qsv_A 118 GVMELS-TYLDMGQLD-GETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAVDPQ 186 (220)
T ss_dssp CCEECC-CEEEEEECT-TSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEECHH
T ss_pred CEEEEE-eEEeeeccC-CCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEEecC
Confidence 356777 777774 24 67788999999999999998 888765 789999999999999999999999774
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=94.29 E-value=0.83 Score=39.38 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=68.6
Q ss_pred ceEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecC------C----CcEEEeCCceeeCCCCEEEEEEEeccCC
Q 026107 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN------P----KKYCVRPNTGVVLPRSTCDVIVTMQSQK 76 (243)
Q Consensus 7 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~------p----~~Y~VrP~~GiI~P~~s~~V~Itlq~~~ 76 (243)
-|.|.|..+.|+..- -...|+|+|.++.++.-.+.... | .-|.|-|..-.|+||+...|.|......
T Consensus 29 ~v~i~~TRvIy~~~~---k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~~~~ 105 (257)
T 3q48_A 29 GLIAQGTRVVFPASE---REVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKAP 105 (257)
T ss_dssp --CCSCSEEEEETTC---SEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEECCCC
T ss_pred eEEEcceEEEEeCCC---cEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEECCCC
Confidence 366788888887642 35899999999988777665432 1 2499999999999999999999876542
Q ss_pred CCCCCCCCCceEEEEEEEcCCCCCcCCCchhhhcccCCCceeEEEeEEEEECC
Q 026107 77 EAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAP 129 (243)
Q Consensus 77 ~~p~~~~~kDKFlVqs~~v~~~~~~~d~~~~~w~~~~~~~i~e~kL~v~~~~~ 129 (243)
.|.|... -|-+-.-.+|+.... + ...=......+|++-|.+.
T Consensus 106 -LP~DrES--lf~lnv~eIPp~~~~-~-------~n~Lqiair~rIKLFyRP~ 147 (257)
T 3q48_A 106 -LPTDRES--LFWLNILEVPPRDED-E-------NNALQFSFRSRFKLFFRPS 147 (257)
T ss_dssp -CCSSSCE--EEEEEEEEECCC-----------------CCEEEEEEEEEECT
T ss_pred -CCCCcee--EEEEEeeecCCCCCC-C-------CceEEEEEEEEEEEEEecc
Confidence 5655333 344444444432110 0 0001123567788777754
No 14
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=92.68 E-value=1.2 Score=37.53 Aligned_cols=84 Identities=11% Similarity=0.165 Sum_probs=60.3
Q ss_pred ceEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecC-----CCcEEEeCCceeeCCCCEEEEEEEeccCCCCCCC
Q 026107 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN-----PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPD 81 (243)
Q Consensus 7 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~-----p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p~~ 81 (243)
-|.|++..+.|+..- -...|+|+|.++.++.-.+.... ..-|.|-|..-.|+||+...|.|..... ..|.|
T Consensus 13 ~v~i~~TRvIy~~~~---k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~lP~D 88 (221)
T 2co7_B 13 SVKLGATRVIYHAGT---AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTD 88 (221)
T ss_dssp ECEESCSEEEEETTS---SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEECCC-CCCSS
T ss_pred EEEEcceEEEEcCCC---CEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEECCC-CCCCC
Confidence 367888899998643 36799999999988776665432 1359999999999999999999988763 35665
Q ss_pred CCCCceEEEEEEE
Q 026107 82 MQCKDKFLLQGVV 94 (243)
Q Consensus 82 ~~~kDKFlVqs~~ 94 (243)
...--.|-|..++
T Consensus 89 rEslf~lnv~eIP 101 (221)
T 2co7_B 89 RETLQWVCIKAVP 101 (221)
T ss_dssp SCEEEEEEEEEEC
T ss_pred ceEEEEEEeecCC
Confidence 3333333344443
No 15
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=92.24 E-value=1.9 Score=36.13 Aligned_cols=108 Identities=15% Similarity=0.186 Sum_probs=70.6
Q ss_pred eEEeCCeeeecccCCCeeeEEEEEEcCCCC-eEEEEEeecC-------CCcEEEeCCceeeCCCCEEEEEEEeccC-CCC
Q 026107 8 LNIEPQELQFPFELRKQISCSLQLSNKTDN-YVAFKVKTTN-------PKKYCVRPNTGVVLPRSTCDVIVTMQSQ-KEA 78 (243)
Q Consensus 8 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~VaFKVKTT~-------p~~Y~VrP~~GiI~P~~s~~V~Itlq~~-~~~ 78 (243)
|.|++..+.|+..- -...|+|+|.++. ++.-.+.... ..-|.|-|..-.|+||+...|.|..... ...
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~~~l 78 (218)
T 2xg5_A 2 VSLDRTRAVFDGSE---KSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKL 78 (218)
T ss_dssp EEESCSEEEEETTS---SEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEECGGGGGS
T ss_pred cEeCceEEEEeCCC---CEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEecCCCCCC
Confidence 56788889998743 4679999999988 8776665432 2349999999999999999999988762 125
Q ss_pred CCCCCCCceEEEEEEEcCCCCCcCCCchhhhcccCCCceeEEEeEEEEECC
Q 026107 79 PPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAP 129 (243)
Q Consensus 79 p~~~~~kDKFlVqs~~v~~~~~~~d~~~~~w~~~~~~~i~e~kL~v~~~~~ 129 (243)
|.|...--.|-|+.+ |+... + .. .=......+|++-|.+.
T Consensus 79 P~DrESlf~lnv~eI--Pp~~~--~--~n-----~lqia~r~rIKlFyRP~ 118 (218)
T 2xg5_A 79 PQDRESLFYFNLREI--PPRSE--K--AN-----VLQIALQTKIKLFYRPA 118 (218)
T ss_dssp CSSSCEEEEEEEEEE--CCCCC--C--TT-----EEEEEEEEEEEEEEECG
T ss_pred CCCceEEEEEEeecC--CCCCC--C--Cc-----eEEEEehheeeEEEcCc
Confidence 666433333444444 43211 1 00 00123567788877754
No 16
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=91.85 E-value=1.4 Score=37.45 Aligned_cols=83 Identities=14% Similarity=0.216 Sum_probs=58.1
Q ss_pred ceEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeec-----CCCcEEEeCCceeeCCCCEEEEEEEeccCCCCCCC
Q 026107 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTT-----NPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPD 81 (243)
Q Consensus 7 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT-----~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p~~ 81 (243)
-|.|.+..+.|+..- -...|+|+|.++.++.-.+... ...-|.|-|..-.|+||+...|.|..... ..|.|
T Consensus 23 ~v~l~~TRvIy~~~~---k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~D 98 (239)
T 4djm_A 23 SLHLGATRVVYNPAS---SGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRTGG-EFPPD 98 (239)
T ss_dssp CCEESCSEEEECTTS---SCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEECSC-CCCSS
T ss_pred eEEEcceEEEEeCCC---CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 467888889997642 3579999999988866555432 12349999999999999999999987654 25655
Q ss_pred CCCCceEEEEEE
Q 026107 82 MQCKDKFLLQGV 93 (243)
Q Consensus 82 ~~~kDKFlVqs~ 93 (243)
...--.|-|..+
T Consensus 99 RESlf~lnv~eI 110 (239)
T 4djm_A 99 RESLQWICVKGI 110 (239)
T ss_dssp SCEEEEEEEEEE
T ss_pred ceEEEEEEEEec
Confidence 332233334443
No 17
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=91.48 E-value=5.1 Score=33.50 Aligned_cols=110 Identities=13% Similarity=0.146 Sum_probs=67.0
Q ss_pred ceEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeec-------CCCcEEEeCCceeeCCCCEEEEEEEeccCCCCC
Q 026107 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTT-------NPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP 79 (243)
Q Consensus 7 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT-------~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p 79 (243)
-|.|+-..+.|+.. .-...|+|+|.++.++.-..... ...-|.|-|..-.|+||+...|.|...... .|
T Consensus 13 gv~l~~TRvIy~~~---~k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~~-LP 88 (218)
T 4ay0_A 13 GVTIGESRIIYPLD---AAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGGV-FP 88 (218)
T ss_dssp CEEESCCEEEEETT---CSCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEECSCC-CC
T ss_pred eEEECceEEEECCC---CcEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEecCCC-CC
Confidence 46677778888763 23578999999998876665432 112499999999999999999999887642 56
Q ss_pred CCCCCCceEEEEEEEcCCCCCcCCCchhhhcccCCCceeEEEeEEEEECCC
Q 026107 80 PDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAPP 130 (243)
Q Consensus 80 ~~~~~kDKFlVqs~~v~~~~~~~d~~~~~w~~~~~~~i~e~kL~v~~~~~~ 130 (243)
.|.. -=|-+-.-.+|+... +- +.. -......+|++-|.+..
T Consensus 89 ~DRE--Slf~lnv~eIPp~~~--~~----~n~--lqia~r~rIKlFyRP~~ 129 (218)
T 4ay0_A 89 RDKE--SLKWLCVKGIPPKDE--DI----WVD--VQFAINNCIKLLVRPNE 129 (218)
T ss_dssp SSSC--EEEEEEEEEECC----------------------CEEEEEEECTT
T ss_pred cCcE--EEEEEEEEecCCCCc--cc----cce--eEEEEEEEEEEEEcCcc
Confidence 5522 235554555554211 10 000 01234567777777543
No 18
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=91.23 E-value=2.1 Score=35.47 Aligned_cols=83 Identities=11% Similarity=0.160 Sum_probs=59.2
Q ss_pred eEEeCCeeeecccCCCeeeEEEEEEcCCCC-eEEEEEeecC-----CCcEEEeCCceeeCCCCEEEEEEEe-ccCCCCCC
Q 026107 8 LNIEPQELQFPFELRKQISCSLQLSNKTDN-YVAFKVKTTN-----PKKYCVRPNTGVVLPRSTCDVIVTM-QSQKEAPP 80 (243)
Q Consensus 8 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~VaFKVKTT~-----p~~Y~VrP~~GiI~P~~s~~V~Itl-q~~~~~p~ 80 (243)
|.|++..+.|+..- -...|+|+|.++. ++.-.+.... ..-|.|-|..-.|+||+...|.|.. ... ..|.
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~-~lP~ 77 (205)
T 1klf_A 2 VALGATRVIYPAGQ---KQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATNN-QLPQ 77 (205)
T ss_dssp EEESCSEEEEETTC---SEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECSCS-CSCS
T ss_pred eEecceEEEEeCCC---cEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCCC-CCCC
Confidence 56788889997743 4679999999987 8776664422 2359999999999999999999988 653 3566
Q ss_pred CCCCCceEEEEEEE
Q 026107 81 DMQCKDKFLLQGVV 94 (243)
Q Consensus 81 ~~~~kDKFlVqs~~ 94 (243)
|...--.|-|..++
T Consensus 78 DrEslf~lnv~eIP 91 (205)
T 1klf_A 78 DRESLFWMNVKAIP 91 (205)
T ss_dssp SSCEEEEEEEEEEC
T ss_pred CceEEEEEEeEecC
Confidence 53333333344443
No 19
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=90.11 E-value=3.2 Score=34.39 Aligned_cols=111 Identities=11% Similarity=0.146 Sum_probs=71.2
Q ss_pred eEEeCCeeeecccCCCeeeEEEEEEcCCC-CeEEEEEeecC-----CCcEEEeCCceeeCCCCEEEEEEE-eccCCCCCC
Q 026107 8 LNIEPQELQFPFELRKQISCSLQLSNKTD-NYVAFKVKTTN-----PKKYCVRPNTGVVLPRSTCDVIVT-MQSQKEAPP 80 (243)
Q Consensus 8 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~-~~VaFKVKTT~-----p~~Y~VrP~~GiI~P~~s~~V~It-lq~~~~~p~ 80 (243)
|.|++..+.|+..- -...|+|+|.++ .++.-.+.... ..-|.|-|..-.|+||+...|.|. ... ...|.
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (206)
T 1l4i_A 2 VALGATRVIYPEGQ---KQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDATN-GQMPE 77 (206)
T ss_dssp EEESCSEEEEETTC---SEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECCT-TCSCS
T ss_pred eEeCceEEEEeCCC---cEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 56778889997743 467999999986 78776665422 235999999999999999999998 654 23566
Q ss_pred CCCCCceEEEEEEEcCCCCCcCCCchhhhcccCCCceeEEEeEEEEECCC
Q 026107 81 DMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAPP 130 (243)
Q Consensus 81 ~~~~kDKFlVqs~~v~~~~~~~d~~~~~w~~~~~~~i~e~kL~v~~~~~~ 130 (243)
|...--.|-|+.++-.+... .+ .. .=......+|++-|.+..
T Consensus 78 DrEslf~lnv~eIPp~~~~~-~~--~n-----~lqia~r~riKlFyRP~~ 119 (206)
T 1l4i_A 78 DRESLFWVNVKAIPAMDKAK-TG--EN-----YLQFAIVSRIKLLYRPQG 119 (206)
T ss_dssp SSCEEEEEEEEEEECCC----------------CCCEEEEEEEEEEECTT
T ss_pred CceEEEEEEeecCCCCcccc-cC--Cc-----eEEEEhhheeeEEEeccc
Confidence 64444445555555322110 00 00 012235678888887553
No 20
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=88.05 E-value=11 Score=31.68 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=54.7
Q ss_pred eEEeCCeeeecccCCCeeeEEEEEEcCCCC-eEEEEEeec--C----CCcEEEeCCceeeCCCCEEEEEEEeccCCCCCC
Q 026107 8 LNIEPQELQFPFELRKQISCSLQLSNKTDN-YVAFKVKTT--N----PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPP 80 (243)
Q Consensus 8 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~VaFKVKTT--~----p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p~ 80 (243)
+.++...+.|+.. .-...|+|+|.++. ++.-.+... . ..-|.|-|..-.|+||+...|.|..... ..|.
T Consensus 2 ~~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~ 77 (224)
T 3gfu_C 2 LAVDQTRYIFRGD---KDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASD-HLPK 77 (224)
T ss_dssp EECSCSEEEEETT---SSCEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred ccccceEEEEeCC---CceEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 4566678888764 23579999999875 554333321 1 2249999999999999999999987653 2565
Q ss_pred CCCCCceEEEEEEE
Q 026107 81 DMQCKDKFLLQGVV 94 (243)
Q Consensus 81 ~~~~kDKFlVqs~~ 94 (243)
|...--.|-|..++
T Consensus 78 DRESlf~lnv~eIP 91 (224)
T 3gfu_C 78 DKESVYWLNLQDIP 91 (224)
T ss_dssp SSCEEEEEEEEEEC
T ss_pred CceEEEEEEeecCC
Confidence 53333333344443
No 21
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=86.96 E-value=1.3 Score=31.31 Aligned_cols=37 Identities=30% Similarity=0.375 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELLRRQA 214 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~~ 214 (243)
-|.+|.++|..|+++...+.++.+.|+.+...|+++.
T Consensus 41 iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 41 LLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999998888888888888888777653
No 22
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=86.24 E-value=4.7 Score=36.49 Aligned_cols=68 Identities=15% Similarity=0.237 Sum_probs=50.5
Q ss_pred CceEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecCCCcE----------------------EEeCCceeeCCC
Q 026107 6 ELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKY----------------------CVRPNTGVVLPR 63 (243)
Q Consensus 6 ~ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~Y----------------------~VrP~~GiI~P~ 63 (243)
..+.++...-.|.-| .+..+-+++++|.++.+|-..==+|+.-+| .|.|+ .-|.||
T Consensus 248 ~~V~~~v~~A~Y~vp-gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~-~pI~PG 325 (382)
T 1yew_A 248 PTVSVKVEDATYRVP-GRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDN-SPLAPG 325 (382)
T ss_dssp CSEEEEEEEEEEESS-CSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCC-SCBCTT
T ss_pred CceEEEeeccEEecC-CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCC-CCcCCC
Confidence 345555555666655 578899999999999999988667766666 33333 238999
Q ss_pred CEEEEEEEeccC
Q 026107 64 STCDVIVTMQSQ 75 (243)
Q Consensus 64 ~s~~V~Itlq~~ 75 (243)
++.+|.|+.|.-
T Consensus 326 ETr~~~v~a~da 337 (382)
T 1yew_A 326 ETRTVDVTASDA 337 (382)
T ss_dssp CEEEEEEEEECH
T ss_pred ceeEEEEEeehH
Confidence 999999998764
No 23
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.84 E-value=1.6 Score=31.09 Aligned_cols=33 Identities=30% Similarity=0.285 Sum_probs=19.2
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQE 206 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e 206 (243)
.|++|...|.+.|.-|+-|...+.++|..|.++
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e 42 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQE 42 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665555555555554433
No 24
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=84.36 E-value=2.4 Score=29.89 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELLRRQA 214 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~~ 214 (243)
-|..|..+|..|+++...+..+.+.|+++...|+++.
T Consensus 41 iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 41 ILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888888888888777776643
No 25
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=84.19 E-value=6 Score=29.45 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=40.0
Q ss_pred eeeEEEEEEcCCCCeEEEEEeecCCCcEEE-eCCceeeCCCCEEEEEEEeccC
Q 026107 24 QISCSLQLSNKTDNYVAFKVKTTNPKKYCV-RPNTGVVLPRSTCDVIVTMQSQ 75 (243)
Q Consensus 24 ~~~~~l~L~N~s~~~VaFKVKTT~p~~Y~V-rP~~GiI~P~~s~~V~Itlq~~ 75 (243)
+-..+|+|.|.+.++..|.++-.....+.+ .|..=.|+||+...+.|.+...
T Consensus 32 ~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~~~ 84 (118)
T 2r39_A 32 ENTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGAD 84 (118)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEEEC
T ss_pred EEEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEEEC
Confidence 356899999999999999999876544654 3554578899988888777543
No 26
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=83.37 E-value=4.7 Score=36.85 Aligned_cols=67 Identities=15% Similarity=0.283 Sum_probs=50.6
Q ss_pred CceEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecCCCcEE--------------------E-eCCceeeCCCC
Q 026107 6 ELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYC--------------------V-RPNTGVVLPRS 64 (243)
Q Consensus 6 ~ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~Y~--------------------V-rP~~GiI~P~~ 64 (243)
..+.++-..-.|.-| .+..+-+++++|+++.+|-+.==+|+.-+|. + .|+ -|.||+
T Consensus 282 ~~V~~~v~~A~Y~vp-gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PGE 358 (419)
T 3rfr_A 282 EQVTTELNGGVYKVP-GRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPGE 358 (419)
T ss_dssp CCCEEEEEEEEEESS-SSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTTC
T ss_pred CceEEEEeceEEecC-CcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCCc
Confidence 345555556677665 5788999999999999998886677666654 1 233 599999
Q ss_pred EEEEEEEeccC
Q 026107 65 TCDVIVTMQSQ 75 (243)
Q Consensus 65 s~~V~Itlq~~ 75 (243)
+.+|.|+.|.-
T Consensus 359 Trt~~V~a~da 369 (419)
T 3rfr_A 359 SKEIVVKIQDA 369 (419)
T ss_dssp EEEEEEEEECH
T ss_pred ceEEEEEeehH
Confidence 99999998754
No 27
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=80.62 E-value=2 Score=30.64 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=29.1
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 172 QYEPQDKSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 172 ~~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
+++|+.+-..+.++...++.++..+.++|++|++|..
T Consensus 29 ieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5567777777777777777777788888888887766
No 28
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=79.49 E-value=4.3 Score=26.87 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 179 STEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
..++...+..|+.+...|..+...|++|+..|+.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777777777777777777776664
No 29
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=76.99 E-value=5.3 Score=26.76 Aligned_cols=35 Identities=11% Similarity=0.266 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
...++...+..|+.++..|..+...|+.|...|+.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777777777777666654
No 30
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=76.24 E-value=6.1 Score=26.40 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=22.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
...++.+++..|+.+...|..+...|++|...|+.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666667777766676666666666665554
No 31
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=75.93 E-value=4.9 Score=28.93 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELLRRQA 214 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~~ 214 (243)
+-.+....+..|+.|...|..+...|++|+..|+...
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788888998899999999999998888754
No 32
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=75.42 E-value=2.7 Score=26.00 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=17.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQ 205 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~ 205 (243)
|+++..++..-.+.|++-.+-+.+||..|+|
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4445555555555555555555555665554
No 33
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=75.41 E-value=1.6 Score=30.24 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=18.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
.+.++...+..|+.+...+..+|..|++++..|+
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555444
No 34
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=75.37 E-value=6.9 Score=27.97 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 179 STEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
|.+|..+|..|+++...+..+...|+++-..|+
T Consensus 47 L~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~ 79 (88)
T 1nkp_A 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLK 79 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777766655555555544444443
No 35
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=73.30 E-value=3.1 Score=27.72 Aligned_cols=35 Identities=11% Similarity=0.287 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
...++...+..|+.+...|..+...|++|...|+.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666655443
No 36
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=72.13 E-value=8.4 Score=27.04 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELEL 209 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~ 209 (243)
=|.+|..+|..|+++...+.+++..|+.++..
T Consensus 44 IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 44 VLRKAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36788899999999988888888888776654
No 37
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=72.10 E-value=8.6 Score=24.96 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 189 LTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 189 L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
|+.|+..+++++..|+++...+++
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 38
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=71.53 E-value=5.7 Score=27.38 Aligned_cols=39 Identities=23% Similarity=0.247 Sum_probs=32.8
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 172 QYEPQDKSTEARALISKLTEEKNSVIQINNKLQQELELL 210 (243)
Q Consensus 172 ~~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l 210 (243)
+.+|+.++.++......|..|...|..++..|+.|+..+
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467888888888888888899989999999998888754
No 39
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=71.15 E-value=4.1 Score=27.43 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 185 LISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 185 ~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
.+..|+.+...|..+|..|..++..|+.
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455556666666665554
No 40
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=70.84 E-value=12 Score=21.20 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 186 ISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 186 i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
|..|+.|...+.+|...|+=|...|+
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445554554444
No 41
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=70.64 E-value=14 Score=23.77 Aligned_cols=31 Identities=13% Similarity=0.061 Sum_probs=22.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQEL 207 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~ 207 (243)
+.|+++..++.-|+.|...+++|.+.....+
T Consensus 3 asYdQL~~QVe~Lk~ENshLrrEL~dNS~~l 33 (54)
T 1deb_A 3 ASYDQLLKQVEALKMENSNLRQELEDNSNHL 33 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHhhHHHH
Confidence 4577888888888888888877765543333
No 42
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=70.56 E-value=9.3 Score=28.88 Aligned_cols=82 Identities=17% Similarity=0.238 Sum_probs=49.2
Q ss_pred eeeEEEEEEcCCCCeE-EEEEeecCCCcEEEe--CCce-eeCC--CCEEEEEEEeccCCCCCCCCCCCceEEEEEEEcC-
Q 026107 24 QISCSLQLSNKTDNYV-AFKVKTTNPKKYCVR--PNTG-VVLP--RSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVAS- 96 (243)
Q Consensus 24 ~~~~~l~L~N~s~~~V-aFKVKTT~p~~Y~Vr--P~~G-iI~P--~~s~~V~Itlq~~~~~p~~~~~kDKFlVqs~~v~- 96 (243)
...-.++.+|.+..+| -|.+..-.|+-|.++ |.+| .|.| +..++=.+.+... .....|=|+.|.+..=.
T Consensus 30 ~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~----~~~~lklR~klsY~~~g~ 105 (122)
T 3zy7_A 30 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNP----QKQQLRMRIKLTFNWNGY 105 (122)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEEECT----TCCCCCEEEEEEEEETTE
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEEECC----CCCCEEEEEEEEEEECCE
Confidence 3667788889987544 588888889887665 7776 6888 6655544444321 11234556666555332
Q ss_pred ---CCCCcCCCchhhh
Q 026107 97 ---PGATAKDITPEMF 109 (243)
Q Consensus 97 ---~~~~~~d~~~~~w 109 (243)
+..+..+++.+.|
T Consensus 106 ~~~E~~~v~~fp~~~~ 121 (122)
T 3zy7_A 106 KVQSEAEVNNFPPQSW 121 (122)
T ss_dssp EEEEEEEECCCCGGGT
T ss_pred EEEEEEEECCCChhhC
Confidence 2222345666777
No 43
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=70.34 E-value=5.4 Score=27.81 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 179 STEARALISKLTEEKNSVIQINNKLQQE 206 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~~q~~~l~~e 206 (243)
|..|..+|..|+++...+.+++..|+++
T Consensus 52 L~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 52 LDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5688888998888877776666666543
No 44
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=69.48 E-value=9 Score=26.92 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 179 STEARALISKLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
-.+....+..|+.|...|..+...|++|+..|+..
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667778888888888888888888888754
No 45
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=68.80 E-value=12 Score=21.80 Aligned_cols=26 Identities=4% Similarity=0.109 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 188 KLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 188 ~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
.|++....++.+|..|++|.++|+..
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45555556778888888888888764
No 46
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=68.04 E-value=2.6 Score=36.23 Aligned_cols=38 Identities=24% Similarity=0.149 Sum_probs=27.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
++.++..+.+...+|.++++.+++|..+|++|++.|++
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44455555566666778888888888888888888774
No 47
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=67.83 E-value=12 Score=24.33 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 184 ALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 184 ~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
+++..|+.+...|..+|..|++++..|+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666666666666666654
No 48
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=67.69 E-value=9.5 Score=25.41 Aligned_cols=34 Identities=29% Similarity=0.234 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
+..++...-..|.+|++.+.++..+|+.|-..||
T Consensus 28 kiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 28 KVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 3444444444455566556556666666665555
No 49
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=66.66 E-value=14 Score=21.64 Aligned_cols=26 Identities=4% Similarity=0.169 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 188 KLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 188 ~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
.|++....++.++..|++|.++|+..
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45555556777788888888888764
No 50
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=66.56 E-value=13 Score=27.43 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=14.9
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQ 205 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~ 205 (243)
++++|+.+|.-..+.|-.|++++.=|.+.|++
T Consensus 6 EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD 37 (103)
T 4h22_A 6 EVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKD 37 (103)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34445555555555555555544444444443
No 51
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=66.12 E-value=15 Score=21.47 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 188 KLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 188 ~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
.|++....++.+|..|++|..+|+.-
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 35555556777788888888888764
No 52
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=65.55 E-value=9 Score=24.74 Aligned_cols=34 Identities=26% Similarity=0.167 Sum_probs=18.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQELELL 210 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l 210 (243)
.++..+.+.-.+|.+-+...++|...|+++++.|
T Consensus 16 ~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 16 ARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444555555666666666666554
No 53
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=65.15 E-value=11 Score=28.47 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 186 ISKLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 186 i~~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
+..|++|+..+.++.+....|+++||+.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666666655555555566666653
No 54
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=65.13 E-value=10 Score=27.07 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=27.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
-+..+..+...|..+...+.++|..|++++..|+
T Consensus 53 YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 53 YILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3557777788888888889999999999888765
No 55
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=64.50 E-value=18 Score=21.23 Aligned_cols=27 Identities=7% Similarity=0.302 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026107 188 KLTEEKNSVIQINNKLQQELELLRRQA 214 (243)
Q Consensus 188 ~L~~e~~~~~~q~~~l~~e~~~l~~~~ 214 (243)
.|++....++.+|..|.+|..+|+.-.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 355555577888888888888887643
No 56
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=63.60 E-value=20 Score=21.04 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 188 KLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 188 ~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
.|++....+..+|..|++|..+||..
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 45555556777788888888887754
No 57
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=63.17 E-value=8.4 Score=21.95 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 188 KLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 188 ~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
+|+|+...+..-.++|++.+++|.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433444555555444
No 58
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=62.63 E-value=7 Score=25.49 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQEL 207 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~ 207 (243)
-+.++...+..|+.|...|..++..|+++.
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888899999999999999999887653
No 59
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=62.00 E-value=18 Score=21.28 Aligned_cols=26 Identities=8% Similarity=0.340 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 188 KLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 188 ~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
.|++....++.++..|..|.++|+.-
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 35555556778888888888888764
No 60
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=61.60 E-value=9.7 Score=26.59 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 179 STEARALISKLTEEKNSVIQINNKLQQELELL 210 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l 210 (243)
+..+..++..|++|...+.+++..|++++..|
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777778888888888888898888887654
No 61
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=60.67 E-value=15 Score=20.77 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 186 ISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 186 i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
+..|+.|..+...+|-+|.+|...|.
T Consensus 3 vaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34455666666666777777766554
No 62
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=60.61 E-value=17 Score=24.29 Aligned_cols=32 Identities=6% Similarity=0.118 Sum_probs=26.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
+.+.++..++..|+.|+..|..+...|++++.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778899999999999999999999988764
No 63
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=59.52 E-value=30 Score=22.54 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 182 ARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 182 ~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
+.+.+-.|++|...+.++++++++-++
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666654333
No 64
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=59.25 E-value=22 Score=25.68 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 181 EARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 181 e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
++..+...|..|+..+.+|+..+..|++.+++
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555544
No 65
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=58.90 E-value=14 Score=25.93 Aligned_cols=31 Identities=13% Similarity=0.123 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 179 STEARALISKLTEEKNSVIQINNKLQQELEL 209 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~ 209 (243)
...+.....+|.+|...+.+|+..|++++..
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566777778888888888888888887763
No 66
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=58.52 E-value=23 Score=20.05 Aligned_cols=27 Identities=19% Similarity=0.110 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 179 STEARALISKLTEEKNSVIQINNKLQQ 205 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~~q~~~l~~ 205 (243)
.+-+.++|..|+.|...+.=|...|+|
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344566677777777766666666654
No 67
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=58.18 E-value=19 Score=26.44 Aligned_cols=30 Identities=17% Similarity=0.291 Sum_probs=15.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQEL 207 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~ 207 (243)
++..+...|..|+.|+..|+++++.|.-++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555444443
No 68
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=57.56 E-value=25 Score=20.86 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 189 LTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 189 L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
|++....++.++..|++|..+|+.
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344344555666666777776665
No 69
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=57.47 E-value=23 Score=21.03 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 189 LTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 189 L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
|++....++.++..|.+|..+|+.
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444444555556666666666654
No 70
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=57.24 E-value=9.5 Score=25.14 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 185 LISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 185 ~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
.+..|+++...+..+|..|+.++..|+.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555554443
No 71
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=57.13 E-value=49 Score=23.48 Aligned_cols=9 Identities=33% Similarity=0.615 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 026107 231 FIGIILGYL 239 (243)
Q Consensus 231 ll~~llg~~ 239 (243)
++.+++.||
T Consensus 81 il~ii~~~~ 89 (91)
T 3hd7_A 81 ILIIIIVYF 89 (91)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 333444443
No 72
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=56.86 E-value=10 Score=27.82 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=23.4
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQEL 207 (243)
Q Consensus 173 ~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~ 207 (243)
.++.+.|+++.+...|-++..+.+.+-.+.|++|+
T Consensus 60 Ae~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl 94 (98)
T 4fm3_A 60 AELDARLAESKVLTQKSKDQLGELDKSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777777666666666666666665
No 73
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=56.71 E-value=17 Score=23.68 Aligned_cols=31 Identities=13% Similarity=0.349 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 181 EARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 181 e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
|..+.+..+.++...+.+||..|++++..++
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666667777777666554
No 74
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=56.65 E-value=11 Score=29.34 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=5.8
Q ss_pred chHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEK 193 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~ 193 (243)
++.+...++..|+.|+
T Consensus 83 ~l~~~~kE~~~lK~el 98 (138)
T 3hnw_A 83 DIENKDKEIYDLKHEL 98 (138)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 75
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=55.11 E-value=24 Score=28.84 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 179 STEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
++-+...+..|+++...+.++|++|++|.....+
T Consensus 147 id~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ 180 (184)
T 3w03_C 147 ICYCLDTIAENQAKNEHLQKENERLLRDWNDVQG 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777776664443
No 76
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=54.55 E-value=28 Score=22.99 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 182 ARALISKLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 182 ~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
-.+.+..|.++...+..+|..|+.++..|+..
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777666653
No 77
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=54.11 E-value=23 Score=24.56 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=16.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 176 QDKSTEARALISKLTEEKNSVIQINNKLQ 204 (243)
Q Consensus 176 ~~~~~e~~~~i~~L~~e~~~~~~q~~~l~ 204 (243)
++...-++.+|..|.+....+.+||.-|+
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666555555565554
No 78
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=53.48 E-value=61 Score=23.48 Aligned_cols=54 Identities=11% Similarity=0.174 Sum_probs=38.8
Q ss_pred CCeeeEEEEEEcCCC---CeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEeccCC
Q 026107 22 RKQISCSLQLSNKTD---NYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQK 76 (243)
Q Consensus 22 ~~~~~~~l~L~N~s~---~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~ 76 (243)
++...+.++++|+=+ .-..|.|--..-.+=... ..|-|.||+++.+.+.+.|..
T Consensus 19 ~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~-~~~~v~pg~~~~~~~~~~P~~ 75 (102)
T 2xzz_A 19 GQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKIL-NVGDIGGNETVTLRQSFVPVR 75 (102)
T ss_dssp SSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEE-EECCBCTTCEEEEEEEECCCS
T ss_pred CCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEE-EcCcCCCCCEEEEEEEEecCc
Confidence 677899999999876 556888775433222111 136699999999999997754
No 79
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=52.33 E-value=34 Score=24.23 Aligned_cols=34 Identities=24% Similarity=0.067 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 179 STEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
|.++..+-.+|.++...+..++..|+++...|+.
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555443
No 80
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=51.98 E-value=33 Score=20.09 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 189 LTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 189 L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
|++....++.+|..|.+|..+|+..
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4444445677777788888777753
No 81
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=51.75 E-value=40 Score=21.60 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=22.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
.++.++..++..|.+.+..|..-.+..++++..|+.+
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkee 45 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666555655555566666666543
No 82
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=51.40 E-value=28 Score=20.89 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 026107 179 STEARALISKLTEEKNSVIQIN 200 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~~q~ 200 (243)
+.|...+|++|++++.++.++.
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEK 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4466667777777666555443
No 83
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=51.25 E-value=14 Score=24.13 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=20.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 176 QDKSTEARALISKLTEEKNSVIQINNKLQQE 206 (243)
Q Consensus 176 ~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e 206 (243)
.+=|++....+..|.+|+..+.+++..|+++
T Consensus 26 D~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 26 NEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677777788888888888888877665
No 84
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=50.55 E-value=14 Score=31.14 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=35.0
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026107 172 QYEPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRRQA 214 (243)
Q Consensus 172 ~~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~~ 214 (243)
++.+++++..+.+.+.+.++|++++..+...-++.++.+|.+.
T Consensus 173 ~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~ 215 (228)
T 3q0x_A 173 LSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQY 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888889998888888888888888887653
No 85
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=50.25 E-value=37 Score=22.28 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 183 RALISKLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 183 ~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
.+.+..|.++...+..+|..|+.++..|+..
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777776654
No 86
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=50.19 E-value=36 Score=19.82 Aligned_cols=25 Identities=8% Similarity=-0.020 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 189 LTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 189 L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
|++....++.++..|.+|..+|+.-
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4444445666677777777777653
No 87
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.15 E-value=30 Score=22.31 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 181 EARALISKLTEEKNSVIQINNKLQQEL 207 (243)
Q Consensus 181 e~~~~i~~L~~e~~~~~~q~~~l~~e~ 207 (243)
.+..+...|+.+...+.++++.|+.++
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455555444
No 88
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=50.09 E-value=42 Score=23.66 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 180 TEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 180 ~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
.++..++..|+.|.+.|+.+++.+.-++..+.
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555566666666666666665555555443
No 89
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=49.95 E-value=18 Score=29.60 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026107 189 LTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 189 L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
|.++++...+|++.|+++++.++
T Consensus 32 L~~ql~~k~~ei~~L~~ql~sl~ 54 (190)
T 4emc_A 32 LSEKLDTKATEIKQLQKQIDSLN 54 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444333
No 90
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=49.89 E-value=28 Score=25.86 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 026107 179 STEARALISKLTEEKNSVI 197 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~ 197 (243)
++++.+++..|+++...+.
T Consensus 13 L~~~~~ei~~L~~ei~eLk 31 (106)
T 4e61_A 13 LTKSQETIGSLNEEIEQYK 31 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444433333
No 91
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=49.23 E-value=17 Score=26.25 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=17.3
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
+|+.....+..++..|.+|+..+.++++.+++...
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555544443
No 92
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=48.99 E-value=31 Score=22.90 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=27.1
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
++|..++-..+.|+.|-.-.+.+.+|.+.++.++..|+.
T Consensus 17 evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 17 ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 456666667777777777767777777777777666654
No 93
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=48.80 E-value=30 Score=25.43 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026107 183 RALISKLTEEKNSVIQINNKLQQELELLRRQA 214 (243)
Q Consensus 183 ~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~~ 214 (243)
..++.+|+++.+.|.++|..|+++.+.|..+.
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788899999999999999998888766543
No 94
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=46.85 E-value=42 Score=19.67 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 189 LTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 189 L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
|.+....+..++..|..|+.+|+..
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444445666677777777777653
No 95
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=46.72 E-value=28 Score=24.27 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=30.1
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026107 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRRQA 214 (243)
Q Consensus 173 ~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~~ 214 (243)
.+|+.+++=....|..|.+....-.++...|+.++..|..+.
T Consensus 17 ~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 17 VELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777777777776643
No 96
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=45.27 E-value=51 Score=20.17 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh
Q 026107 180 TEARALISKLTEEKNSVIQINNK-------LQQELELLRRQ 213 (243)
Q Consensus 180 ~e~~~~i~~L~~e~~~~~~q~~~-------l~~e~~~l~~~ 213 (243)
+++..++..|+.|...+.+.|-+ |.+|...||++
T Consensus 6 aqlenevaslenenetlkkknlhkkdliaylekeianlrkk 46 (49)
T 3he5_A 6 AQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 34455566666665555444432 23455566654
No 97
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=45.19 E-value=26 Score=25.82 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 187 SKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 187 ~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
..|++++..+.+|.+.+++|+..|+.
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34677777777778888888888875
No 98
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=45.00 E-value=52 Score=20.24 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 181 EARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 181 e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
++.+.|.++..|.....++...||..+..|..
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666655555544
No 99
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=44.95 E-value=64 Score=24.37 Aligned_cols=68 Identities=9% Similarity=0.025 Sum_probs=47.6
Q ss_pred CCeeeEEEEEEcCCCCe-EEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEeccCCCCCCCCCCCceEEEEEEEcCCC
Q 026107 22 RKQISCSLQLSNKTDNY-VAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPG 98 (243)
Q Consensus 22 ~~~~~~~l~L~N~s~~~-VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p~~~~~kDKFlVqs~~v~~~ 98 (243)
++.+.-.++++|.+... =+|+|+-...+.+.-.-..+ |.||++.+|.+...+. ....+-|..+.-+++
T Consensus 32 G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~~~~--------~~G~~~v~AvVD~~n 100 (127)
T 3idu_A 32 NKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNWTPT--------QEGMYRINATVDEEN 100 (127)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEECCS--------SCEEEEEEEEESTTC
T ss_pred CCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEEEcC--------CCcEEEEEEEEcCCC
Confidence 56789999999998744 67888866666655443344 9999999999987542 134556666655544
No 100
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=44.59 E-value=51 Score=21.79 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 186 ISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 186 i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
+..|..+...+.++|..|+.++..|+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~ 50 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLA 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 101
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=44.34 E-value=16 Score=22.76 Aligned_cols=17 Identities=12% Similarity=0.528 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhcc
Q 026107 226 VVIVGFIGIILGYLMKK 242 (243)
Q Consensus 226 v~~v~ll~~llg~~~~~ 242 (243)
++++++++++++||+++
T Consensus 21 v~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 45566667777777764
No 102
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=43.63 E-value=45 Score=19.60 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 185 LISKLTEEKNSVIQINNKLQQELELL 210 (243)
Q Consensus 185 ~i~~L~~e~~~~~~q~~~l~~e~~~l 210 (243)
.-.+|--|+..+.+.+.+|.+.++.+
T Consensus 8 dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 8 EEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555556666666676666543
No 103
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=42.97 E-value=27 Score=25.39 Aligned_cols=40 Identities=5% Similarity=0.012 Sum_probs=28.4
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 172 QYEPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 172 ~~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
+..++.++.++.....++.+|..++.+.+..+..+++.+.
T Consensus 25 ae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~e 64 (101)
T 3u1c_A 25 AEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVL 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777788888888887777777766443
No 104
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=42.73 E-value=74 Score=24.41 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=39.0
Q ss_pred eeeEEEEEEcCCCC-eEEEEEeecCCCcEEEe--CCce-eeCCCC--EEEEEEEeccCCCCCCCCCCCceEEEEEEE
Q 026107 24 QISCSLQLSNKTDN-YVAFKVKTTNPKKYCVR--PNTG-VVLPRS--TCDVIVTMQSQKEAPPDMQCKDKFLLQGVV 94 (243)
Q Consensus 24 ~~~~~l~L~N~s~~-~VaFKVKTT~p~~Y~Vr--P~~G-iI~P~~--s~~V~Itlq~~~~~p~~~~~kDKFlVqs~~ 94 (243)
...-.++.+|.+.. -=-|.+.--.|+-|.++ |.+| .|.|+. .++-.+.+.... ..+.+=|+.|.+..
T Consensus 48 ~~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~~~~ItQ~m~I~n~~----~~~l~LR~klsY~~ 120 (140)
T 1gyu_A 48 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQ----KQQLRMRIKLTYNH 120 (140)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGCCCEEEEEEEECTT----CCCCCEEEEEEEEE
T ss_pred EEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCC----CCCEEEEEEEEEEE
Confidence 35567788898764 44677777788887766 5555 588833 333333332211 11245566665554
No 105
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=42.62 E-value=55 Score=24.68 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
++.|+..+|..|+.++.....+.+.|+.+...+.
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 4778888888888888888888888877666444
No 106
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=42.53 E-value=32 Score=26.73 Aligned_cols=37 Identities=11% Similarity=0.059 Sum_probs=28.1
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELELL 210 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l 210 (243)
.|+.+..++...+.+|.+|...+.++.+.|++++...
T Consensus 22 ~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 22 ILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp TTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555777888888888888888888888777654
No 107
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=42.53 E-value=50 Score=24.28 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=24.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 176 ~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
..++..+++++..|.++.+.+-+..+.+++.+..+.
T Consensus 5 ~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 5 GGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677777888887776667666666666666544
No 108
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=42.00 E-value=42 Score=24.57 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 185 LISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 185 ~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
.|..|..|...++.||..|.+|...-++
T Consensus 66 ~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444555555666666666655554443
No 109
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=41.80 E-value=56 Score=22.05 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHh
Q 026107 178 KSTEARALISKLTEEKN------------SVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~------------~~~~q~~~l~~e~~~l~~~ 213 (243)
++.++..++..|+.|+. .+.|+..+|.+|++.+.+.
T Consensus 7 ~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~ 54 (65)
T 3sja_C 7 KYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDE 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666676766664 3566666666666655543
No 110
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=41.70 E-value=31 Score=23.91 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=28.3
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 173 ~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
..++.++.++.....++.+|..++.+.+..|.++++...
T Consensus 23 ~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~e 61 (81)
T 1ic2_A 23 EQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYS 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777888888888888888877776443
No 111
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=41.43 E-value=95 Score=23.93 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=38.7
Q ss_pred eeeEEEEEEcCCCC-eEEEEEeecCCCcEEEe--CCce-eeCCCC--EEEEEEEeccCCCCCCCCCCCceEEEEEEE
Q 026107 24 QISCSLQLSNKTDN-YVAFKVKTTNPKKYCVR--PNTG-VVLPRS--TCDVIVTMQSQKEAPPDMQCKDKFLLQGVV 94 (243)
Q Consensus 24 ~~~~~l~L~N~s~~-~VaFKVKTT~p~~Y~Vr--P~~G-iI~P~~--s~~V~Itlq~~~~~p~~~~~kDKFlVqs~~ 94 (243)
...-.++.+|.+.. -=-|.+.--.|+-|.++ |.+| .|.|+. .++-.+.+.... ..+.+=|+.|.+..
T Consensus 54 ~~~i~~~f~N~s~~~it~f~fQaAVPK~~kLqL~ppSg~~L~p~~~~~ItQ~~~I~n~~----~~~lklR~klsY~~ 126 (146)
T 1iu1_A 54 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSIVPAFNTGTITQVIKVLNPQ----KQQLRMRIKLTYNH 126 (146)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGCCCEEEEEEEECTT----CCCCCCEEEEEEEE
T ss_pred EEEEEEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCC----CCCEEEEEEEEEEE
Confidence 35556788898764 44677777788877766 5555 588843 333333332211 11245566665554
No 112
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=40.66 E-value=38 Score=21.81 Aligned_cols=33 Identities=9% Similarity=0.119 Sum_probs=16.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 176 ~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
..+..++..+|..|+.+...+.-+.+..++|-.
T Consensus 10 ss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~ 42 (52)
T 1jcd_A 10 SSDAQTANAKADQASNDANAARSDAQAAKDDAA 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444444444444
No 113
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=40.60 E-value=56 Score=26.71 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=12.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNK 202 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~ 202 (243)
+++....+|..|+++++++..+...
T Consensus 35 ql~~k~~ei~~L~~ql~sl~~~~~~ 59 (190)
T 4emc_A 35 KLDTKATEIKQLQKQIDSLNAQVKE 59 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4444455555555555555444433
No 114
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=40.58 E-value=29 Score=25.47 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=9.6
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQ 198 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~ 198 (243)
.|-++...+.+|.+|...+++
T Consensus 38 EYl~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 38 EYLELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555444444333
No 115
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=40.56 E-value=50 Score=19.41 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026107 189 LTEEKNSVIQINNKLQQEL 207 (243)
Q Consensus 189 L~~e~~~~~~q~~~l~~e~ 207 (243)
.+.+.+.+.+||..|.++.
T Consensus 12 ~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 12 HQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHH
Confidence 4445555666666666554
No 116
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=40.14 E-value=47 Score=26.07 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=51.1
Q ss_pred eEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEE-EEeccCCCCCCCCCCCceEEEEEEEcCCCC
Q 026107 26 SCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVI-VTMQSQKEAPPDMQCKDKFLLQGVVASPGA 99 (243)
Q Consensus 26 ~~~l~L~N~s~~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~-Itlq~~~~~p~~~~~kDKFlVqs~~v~~~~ 99 (243)
.-..-|.|.|+..+.|-.-+..-+.|.++ ..|.|+|+....|. +.+... ..--+|.||-+..-.+.
T Consensus 29 ~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~~~el-------n~~~~~~vQ~layK~~k 95 (147)
T 2huh_A 29 PFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFTKDVL-------NEMERVAVQLIAFKDGK 95 (147)
T ss_dssp CEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEECGGGG-------GGCSSEEEEEEEECSSS
T ss_pred ceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeChhHh-------cCCceEEEEEEEEcCCC
Confidence 45778999999999999988887788776 68999999887775 444332 24567899999887643
No 117
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=39.53 E-value=39 Score=27.52 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=24.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
.+.+++.+.+..|++|.+.|.+|.++..++++
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677788888888888888888777766654
No 118
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=39.48 E-value=42 Score=29.74 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=48.3
Q ss_pred EEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEeccCCCCCCCCCCCceEEEEEEEcCC
Q 026107 27 CSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASP 97 (243)
Q Consensus 27 ~~l~L~N~s~~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p~~~~~kDKFlVqs~~v~~ 97 (243)
-++.|+|.++- -|.++-+++..|.+.+..=-|+|+++.++.|-+.... + ...=+|-|--+.+.+
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~ 333 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFKQGI--K---GGDVNFEVTNFIVAP 333 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEECTTC--C---CCEEEEEEEEEEEET
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEeccccc--c---ceEEEEEeeeeeecC
Confidence 58889998875 5777888999999999999999999999998764322 1 234566665555544
No 119
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=38.66 E-value=44 Score=23.06 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 183 RALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 183 ~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
...|..|+.+++..-.+.+.|+.+++.+|
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33455555555555555666666666554
No 120
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=38.38 E-value=23 Score=22.09 Aligned_cols=17 Identities=12% Similarity=0.505 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhcc
Q 026107 226 VVIVGFIGIILGYLMKK 242 (243)
Q Consensus 226 v~~v~ll~~llg~~~~~ 242 (243)
++++++++++++||+++
T Consensus 20 v~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 45555666667777764
No 121
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=37.55 E-value=52 Score=24.78 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=29.1
Q ss_pred EEEEEEcCCCCeEE---EEEeecCCC---cEEEeCCceeeCCCCEEEE
Q 026107 27 CSLQLSNKTDNYVA---FKVKTTNPK---KYCVRPNTGVVLPRSTCDV 68 (243)
Q Consensus 27 ~~l~L~N~s~~~Va---FKVKTT~p~---~Y~VrP~~GiI~P~~s~~V 68 (243)
..++|.|.+++.+. |+++-...+ .|. -|..=+|+||.+++|
T Consensus 25 ~fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~-Fp~~~~L~pg~~vtV 71 (123)
T 3hn9_A 25 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYK-YTSRYVLKAGQTVTI 71 (123)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEE-CCTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEE-cCCCcEECCCCEEEE
Confidence 47899999987765 788755443 354 465568999998665
No 122
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=37.39 E-value=68 Score=22.90 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 179 STEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
+.++..+|..+..|+..+.-|...|+.+...++.
T Consensus 58 i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444555555555555555555555555443
No 123
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=36.04 E-value=75 Score=20.41 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=18.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
++.++..++..|..+.++|..+...|+.+..
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666555554443
No 124
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=35.98 E-value=54 Score=29.70 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=8.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQI 199 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q 199 (243)
++.++.+++..|+++...+..+
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~ 32 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELG 32 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 125
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=35.87 E-value=64 Score=24.06 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=22.4
Q ss_pred cCCcccchH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 172 QYEPQDKST----EARALISKLTEEKNSVIQINNKLQQ 205 (243)
Q Consensus 172 ~~~l~~~~~----e~~~~i~~L~~e~~~~~~q~~~l~~ 205 (243)
+++++.|+. ++..++..|++|...++..+..++.
T Consensus 19 ~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~ 56 (111)
T 2v66_B 19 VEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHK 56 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555554 4455678888888887777776643
No 126
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=35.77 E-value=51 Score=24.87 Aligned_cols=19 Identities=37% Similarity=0.375 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026107 195 SVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 195 ~~~~q~~~l~~e~~~l~~~ 213 (243)
.++.++..|+.+++.+++.
T Consensus 65 ~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 65 QAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444566677777766653
No 127
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=35.51 E-value=56 Score=23.12 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 180 TEARALISKLTEEKNSVIQINNKLQQ 205 (243)
Q Consensus 180 ~e~~~~i~~L~~e~~~~~~q~~~l~~ 205 (243)
.++...|..|++|+..+.++|+.|+.
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888888888887764
No 128
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=35.20 E-value=80 Score=19.52 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 179 STEARALISKLTEEKNSVIQINNKLQQELELL 210 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l 210 (243)
+-.+..++.||++++.+-.-++-.|+.++..+
T Consensus 6 cmslasqvvkltkql~eqt~~rv~lq~qlq~l 37 (48)
T 2kes_A 6 CMSLASQVVKLTKQLKEQTVERVTLQNQLQQF 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456678888888777667777777666643
No 129
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=34.57 E-value=38 Score=28.95 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=27.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026107 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELELLRRQA 214 (243)
Q Consensus 176 ~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~~ 214 (243)
+.++.++..++..|...+..+..+.+.+++|+..|+.+.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEl 91 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEV 91 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777766667777777777777777643
No 130
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=34.16 E-value=76 Score=22.94 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKN------------SVIQINNKLQQELELLRR 212 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~------------~~~~q~~~l~~e~~~l~~ 212 (243)
++.++..++.+|+.|+. .+.|+.++|.+|++.+.+
T Consensus 24 ~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~ 70 (93)
T 3sjb_C 24 KYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKD 70 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666665554 355555555555554443
No 131
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=33.92 E-value=83 Score=19.31 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 180 TEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 180 ~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
.++.+....|+.-.+.|.+....|+.|-.+||+
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444444444444444444444555555554
No 132
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=33.91 E-value=76 Score=20.24 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=22.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQELEL 209 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~ 209 (243)
...++++.+|-.|++++..-..++..+.++++.
T Consensus 12 RsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345667777777777766666666667777663
No 133
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=33.38 E-value=80 Score=23.69 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=21.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
.+..+.++...|+.|+-|++++..++..|...+.
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~ 67 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIA 67 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455667777777777777766666666654433
No 134
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.09 E-value=1.1e+02 Score=22.24 Aligned_cols=13 Identities=38% Similarity=0.496 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 026107 198 QINNKLQQELELL 210 (243)
Q Consensus 198 ~q~~~l~~e~~~l 210 (243)
+++.++.+|++.|
T Consensus 47 ~~~~~ie~ElEeL 59 (97)
T 2eqb_B 47 EEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444455555544
No 135
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.06 E-value=39 Score=30.66 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=12.2
Q ss_pred CcccchHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVI 197 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~ 197 (243)
+++.+..++...|.++++++..+.
T Consensus 14 ~l~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 14 ALKEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544443
No 136
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=33.00 E-value=36 Score=22.66 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=17.2
Q ss_pred EEEEEcCCCCeEEEEEeecCC
Q 026107 28 SLQLSNKTDNYVAFKVKTTNP 48 (243)
Q Consensus 28 ~l~L~N~s~~~VaFKVKTT~p 48 (243)
+|++...+...+.|||+.|.+
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 577888778889999988766
No 137
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=32.88 E-value=1.2e+02 Score=21.09 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 185 LISKLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 185 ~i~~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
-...+..+...|.++|..|+.++..|++.
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555567788888888888877664
No 138
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=32.55 E-value=50 Score=23.96 Aligned_cols=39 Identities=18% Similarity=0.125 Sum_probs=27.5
Q ss_pred cchHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhcC
Q 026107 177 DKSTEARALISKLTEEKN------------SVIQINNKLQQELELLRRQAN 215 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~------------~~~~q~~~l~~e~~~l~~~~~ 215 (243)
.++.++..++.+|+.|+. .+.|+.++|.+|++.+.+...
T Consensus 30 ~~~~~lk~E~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~ele~l~~~L~ 80 (94)
T 3vlc_E 30 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQ 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHTTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888775 467777777777776666543
No 139
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=32.38 E-value=96 Score=21.90 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026107 185 LISKLTEEKNSVIQINNKL 203 (243)
Q Consensus 185 ~i~~L~~e~~~~~~q~~~l 203 (243)
.|..+++|+..+.++|..|
T Consensus 46 ~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 46 EIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 140
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=32.11 E-value=50 Score=23.82 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=25.8
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQELEL 209 (243)
Q Consensus 173 ~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~ 209 (243)
..++.++..+.....++.+|..++.+.++.+.++++.
T Consensus 26 e~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~ 62 (101)
T 3u59_A 26 EQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEK 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777777777777666653
No 141
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.89 E-value=45 Score=24.33 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=12.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQEL 207 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~ 207 (243)
.|..+..++..|+.++.....+..+|++++
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l 35 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDI 35 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344444444444444444444444444333
No 142
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=31.72 E-value=1.2e+02 Score=21.51 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026107 190 TEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 190 ~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
..+...|.++|..|+.++..|++
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~ 64 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSR 64 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555555555555555554
No 143
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=31.57 E-value=51 Score=19.29 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhccC
Q 026107 224 IYVVIVGFIGIILGYLMKKI 243 (243)
Q Consensus 224 ~~v~~v~ll~~llg~~~~~~ 243 (243)
|.+++++|=-++.||+|+-|
T Consensus 15 WalllLaINflVAayYFhii 34 (35)
T 1jb0_X 15 WAVLLLAINFLVAAYYFAAA 34 (35)
T ss_dssp HHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 66777787778888988754
No 144
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=31.33 E-value=76 Score=23.57 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 180 TEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 180 ~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
.++..++.+..++...+..+...|+.|+.+.|
T Consensus 85 ~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 85 EEWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555566666666667777777777776654
No 145
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=31.00 E-value=2e+02 Score=27.27 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=38.3
Q ss_pred eeeEEEEEEcCCCCeEEEEEeecCCCc--EEEeCCceee-CCCCEEEEEEEecc
Q 026107 24 QISCSLQLSNKTDNYVAFKVKTTNPKK--YCVRPNTGVV-LPRSTCDVIVTMQS 74 (243)
Q Consensus 24 ~~~~~l~L~N~s~~~VaFKVKTT~p~~--Y~VrP~~GiI-~P~~s~~V~Itlq~ 74 (243)
..+-+-+++|.....-.|+++.+.|.- -.|.|..=.+ ..|++..++|++..
T Consensus 538 ~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~ 591 (621)
T 3vta_A 538 NQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG 591 (621)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEE
T ss_pred EEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEe
Confidence 344556899999999999999998874 4567876555 56888888887754
No 146
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=30.69 E-value=90 Score=25.88 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 181 EARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 181 e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
.+.+++..|+++...+..+..+++.+.+.+|
T Consensus 63 ~l~~~l~~l~~e~~el~d~~lR~~AEfeN~R 93 (213)
T 4ani_A 63 AAKAQIAELEAKLSEMEHRYLRLYADFENFR 93 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333333444333
No 147
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=30.56 E-value=59 Score=22.53 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 186 ISKLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 186 i~~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
+.-|++....+..+|.+|..|-..||.-
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555555555555555555555543
No 148
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=30.47 E-value=68 Score=17.28 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026107 189 LTEEKNSVIQINNKLQQEL 207 (243)
Q Consensus 189 L~~e~~~~~~q~~~l~~e~ 207 (243)
|++|..++..+.+.|++|.
T Consensus 5 lkdevgelkgevralkdev 23 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEV 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHH
Confidence 3444444444444444443
No 149
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=30.42 E-value=57 Score=26.48 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 180 TEARALISKLTEEKNSVIQINNKLQQE 206 (243)
Q Consensus 180 ~e~~~~i~~L~~e~~~~~~q~~~l~~e 206 (243)
.-....|..|+.+...+++||++|++|
T Consensus 157 ~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 157 CYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666666666544
No 150
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=30.20 E-value=65 Score=24.20 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=37.1
Q ss_pred ceEEeCCeeeecccCCCeeeEEEEEEcCCCCe-----EEEEEeecC-------------C-CcEE------EeCCceeeC
Q 026107 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNY-----VAFKVKTTN-------------P-KKYC------VRPNTGVVL 61 (243)
Q Consensus 7 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~-----VaFKVKTT~-------------p-~~Y~------VrP~~GiI~ 61 (243)
-+..+|.+|..+.+. .+-+++++|....+ --|-+-+.+ + ..|. +--..++|.
T Consensus 11 ~m~F~p~~i~V~k~G---~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~ 87 (128)
T 2iaa_C 11 SMQFNTKSIVVDKTC---KEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVIG 87 (128)
T ss_dssp TSCBSCSEEEECTTC---SEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBC
T ss_pred CceEecCEEEEecCC---cEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceeeC
Confidence 355667776663332 24589999998653 445444432 0 0111 111246799
Q ss_pred CCCEEEEEEEe
Q 026107 62 PRSTCDVIVTM 72 (243)
Q Consensus 62 P~~s~~V~Itl 72 (243)
||++..|+++.
T Consensus 88 pGes~~vtf~~ 98 (128)
T 2iaa_C 88 GGETDSVTFDV 98 (128)
T ss_dssp TTCEEEEEEES
T ss_pred CCCEEEEEEec
Confidence 99999999975
No 151
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=30.16 E-value=56 Score=22.10 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 186 ISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 186 i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
+...+.|...++++.+.|+-|++.++
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33345555556666666666655543
No 152
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=30.13 E-value=1.3e+02 Score=21.83 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=33.3
Q ss_pred eeEEEEEEcCCCCeEE-EEEeec-----------------CCCcEEEeCC--ceeeCC-CCEEEEEEEec
Q 026107 25 ISCSLQLSNKTDNYVA-FKVKTT-----------------NPKKYCVRPN--TGVVLP-RSTCDVIVTMQ 73 (243)
Q Consensus 25 ~~~~l~L~N~s~~~Va-FKVKTT-----------------~p~~Y~VrP~--~GiI~P-~~s~~V~Itlq 73 (243)
....++|+|.++.+|- ++|.=+ +-..|.|+|. -|-|.| |.++.+-+.-.
T Consensus 17 f~~~vtVtN~g~~~i~gWtv~~~~p~g~~it~~Wna~~s~sG~~vt~~n~~wN~~la~~G~s~~fGf~g~ 86 (107)
T 3ndz_E 17 ASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFGFNIN 86 (107)
T ss_dssp EEEEEEEEECSSSCEESCEEEEECCTTEEEEEEESEEEEEETTEEEEEECSTTCEECTTTEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCcccCcEEEEEcCCCCEEecccceEEEecCCEEEEEECCcccccCCCCccEEEEEEEe
Confidence 4678899998766543 333322 2367899865 489999 99887766543
No 153
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=29.89 E-value=89 Score=23.50 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=14.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 176 QDKSTEARALISKLTEEKNSVIQINNKLQQ 205 (243)
Q Consensus 176 ~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~ 205 (243)
+..+.++...|+.|+-|++++..++..|..
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~ 66 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLEN 66 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344555566666666665555555555443
No 154
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=29.61 E-value=1.1e+02 Score=21.51 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 026107 196 VIQINNKLQQELELLR 211 (243)
Q Consensus 196 ~~~q~~~l~~e~~~l~ 211 (243)
+..+.+.|++++..||
T Consensus 57 L~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 57 LEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 155
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=28.78 E-value=1.3e+02 Score=21.44 Aligned_cols=29 Identities=17% Similarity=0.191 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 180 TEARALISKLTEEKNSVIQINNKLQQELE 208 (243)
Q Consensus 180 ~e~~~~i~~L~~e~~~~~~q~~~l~~e~~ 208 (243)
+++.+++..|..|+..+-.+...++.+..
T Consensus 21 ~~L~~eL~~lEke~~~l~~el~~le~E~~ 49 (96)
T 3q8t_A 21 ERLIQELEDVEKNRKVVAENLEKVQAEAE 49 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 156
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=28.62 E-value=51 Score=23.30 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=18.7
Q ss_pred eEEEEEEcCCCCeEEEEEeecCC
Q 026107 26 SCSLQLSNKTDNYVAFKVKTTNP 48 (243)
Q Consensus 26 ~~~l~L~N~s~~~VaFKVKTT~p 48 (243)
.-+|+++..+...|.||||.|.+
T Consensus 5 ~i~ikVk~~~g~~v~~~vk~~t~ 27 (91)
T 2io0_B 5 HINLKVAGQDGSVVQFKIKRHTP 27 (91)
T ss_dssp EEEEEEECTTSCEEEEEEETTSC
T ss_pred eEEEEEECCCCCEEEEEECCCCh
Confidence 35788888888899999998776
No 157
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=28.59 E-value=89 Score=23.23 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=26.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
++.+...+...+.+|+++...+..+...+.+++..+.+
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677777777888888777777777777766665443
No 158
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=28.54 E-value=87 Score=21.92 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 181 EARALISKLTEEKNSVIQINNKLQQE 206 (243)
Q Consensus 181 e~~~~i~~L~~e~~~~~~q~~~l~~e 206 (243)
++-..|..+++|...+.++|..|+.-
T Consensus 38 ~Lh~~ie~~~eEi~~LkeEN~~L~el 63 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLRKENKDLAEV 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777777777766543
No 159
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=27.70 E-value=78 Score=27.89 Aligned_cols=42 Identities=21% Similarity=0.075 Sum_probs=28.2
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 172 QYEPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 172 ~~~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
+..+++++..+.++|..|++.+..+..+...|++.+..|+..
T Consensus 6 ~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~ 47 (319)
T 1fzc_C 6 IMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 47 (319)
T ss_dssp ----CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777888888887777777777777777666553
No 160
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=27.62 E-value=1.5e+02 Score=20.72 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 180 TEARALISKLTEEKNSVIQINNKLQQ 205 (243)
Q Consensus 180 ~e~~~~i~~L~~e~~~~~~q~~~l~~ 205 (243)
.++..+|..++.++..+.-|+..++.
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~ 28 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAE 28 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444555555544444444444433
No 161
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=27.47 E-value=95 Score=21.69 Aligned_cols=29 Identities=7% Similarity=0.134 Sum_probs=13.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQE 206 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e 206 (243)
+..++...|..|+.++...+.+...++.|
T Consensus 21 rN~~Le~~v~~le~~Le~s~~~q~~~~~E 49 (79)
T 3cvf_A 21 RNAELEHQLRAMERSLEEARAERERARAE 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555554444444444333
No 162
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=27.07 E-value=94 Score=24.08 Aligned_cols=42 Identities=10% Similarity=0.059 Sum_probs=28.0
Q ss_pred EEEEEEcCCCCeEE---EEEeecCCCc--EEEeCCceeeCCCCEEEE
Q 026107 27 CSLQLSNKTDNYVA---FKVKTTNPKK--YCVRPNTGVVLPRSTCDV 68 (243)
Q Consensus 27 ~~l~L~N~s~~~Va---FKVKTT~p~~--Y~VrP~~GiI~P~~s~~V 68 (243)
..++|.|++++.+. |+++-+..+. .+.-|..=+|+||.+++|
T Consensus 38 kfV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~FP~~~~L~pg~~VtV 84 (144)
T 3jt0_A 38 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTI 84 (144)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEECCTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEcCCCcEECCCCEEEE
Confidence 47899999887764 6676443321 234565558999988665
No 163
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=27.01 E-value=71 Score=24.01 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=37.2
Q ss_pred ceEEeCCeeeecccCCCeeeEEEEEEcCCCCe-----EEEEEeecC-------------C-CcEE------EeCCceeeC
Q 026107 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNY-----VAFKVKTTN-------------P-KKYC------VRPNTGVVL 61 (243)
Q Consensus 7 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~-----VaFKVKTT~-------------p-~~Y~------VrP~~GiI~ 61 (243)
-+..+|.+|..+.+. -.-+++++|...-+ --|-+-+.. + ..|. +--..++|.
T Consensus 12 ~m~F~p~~i~V~k~G---~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~ 88 (129)
T 2ccw_A 12 AMQYNVKEIVVDKSC---KQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIG 88 (129)
T ss_dssp TSCBSCSEEEECTTC---SEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBC
T ss_pred CccEecceEEEecCC---CEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccccccccccceeeeeEEC
Confidence 345566666663322 24589999998653 445554432 0 0111 111245789
Q ss_pred CCCEEEEEEEec
Q 026107 62 PRSTCDVIVTMQ 73 (243)
Q Consensus 62 P~~s~~V~Itlq 73 (243)
||++..|+++..
T Consensus 89 pGet~svtf~~~ 100 (129)
T 2ccw_A 89 GGESDSVTFDVS 100 (129)
T ss_dssp TTCEEEEEEEGG
T ss_pred CCCEEEEEEecc
Confidence 999999998763
No 164
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=26.81 E-value=1.1e+02 Score=25.15 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 181 EARALISKLTEEKNSVIQINNKLQ 204 (243)
Q Consensus 181 e~~~~i~~L~~e~~~~~~q~~~l~ 204 (243)
++...|..|++|++.+.++|..|+
T Consensus 119 ~Lh~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 119 KLHKEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666654
No 165
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=26.81 E-value=35 Score=18.60 Aligned_cols=7 Identities=29% Similarity=0.401 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 026107 183 RALISKL 189 (243)
Q Consensus 183 ~~~i~~L 189 (243)
.++|..|
T Consensus 13 kqeiaal 19 (28)
T 3ra3_B 13 KQEIAAL 19 (28)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 166
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=26.71 E-value=83 Score=23.65 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=20.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
|..++.++...+....+....+..+.+++.++...|++
T Consensus 81 Le~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 81 LEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555565666666665555554
No 167
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=32.68 E-value=14 Score=20.52 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhc
Q 026107 226 VVIVGFIGIILGYLMK 241 (243)
Q Consensus 226 v~~v~ll~~llg~~~~ 241 (243)
+++.++++..+|||+-
T Consensus 5 l~iavvlGa~~Gyf~F 20 (26)
T 2ls4_A 5 LCIAVAAGAGTGYFLF 20 (26)
Confidence 4555667777888763
No 168
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=26.59 E-value=1e+02 Score=19.24 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 026107 180 TEARALISKLTEEK 193 (243)
Q Consensus 180 ~e~~~~i~~L~~e~ 193 (243)
.|...+++|+++|.
T Consensus 18 ~E~RkElqK~K~EI 31 (45)
T 1use_A 18 EEVKKELQKVKEEI 31 (45)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555543
No 169
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=26.43 E-value=43 Score=18.23 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026107 191 EEKNSVIQINNKLQQELEL 209 (243)
Q Consensus 191 ~e~~~~~~q~~~l~~e~~~ 209 (243)
=|.+.+.+....|+|....
T Consensus 7 fendaleqkiaalkqkias 25 (28)
T 3ra3_A 7 FENDALEQKIAALKQKIAS 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 170
>3fga_D Shugoshin-like 1; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens}
Probab=26.17 E-value=50 Score=20.72 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=13.9
Q ss_pred ccchHHHHHHHHHHHHHHHH
Q 026107 176 QDKSTEARALISKLTEEKNS 195 (243)
Q Consensus 176 ~~~~~e~~~~i~~L~~e~~~ 195 (243)
++|.++|.+.|..|+.|...
T Consensus 23 k~Kvr~Aq~~ILqLkrE~q~ 42 (47)
T 3fga_D 23 KSKVKEAQDIILQLRKECYY 42 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777776443
No 171
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=25.76 E-value=68 Score=24.47 Aligned_cols=27 Identities=37% Similarity=0.224 Sum_probs=11.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQ 204 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~ 204 (243)
+|.-..+++..|..+++.+.+|..+|+
T Consensus 99 ~L~~~laqLe~ls~qL~~ls~~v~~L~ 125 (140)
T 3iyn_Q 99 KLTALLAQLDSLTRELNVVSQQLLDLR 125 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 172
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=25.62 E-value=1.5e+02 Score=20.73 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=22.6
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQ 205 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~ 205 (243)
++..++.++..+|..|+.+...+..+.+.+++
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45567777888888887777776666666654
No 173
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=25.35 E-value=1.3e+02 Score=30.24 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=34.7
Q ss_pred eeeEEEEEEcC------CCCeEE--------------EEEeecCCCcEEEeCCcee--eCCCCEEEEEEEe
Q 026107 24 QISCSLQLSNK------TDNYVA--------------FKVKTTNPKKYCVRPNTGV--VLPRSTCDVIVTM 72 (243)
Q Consensus 24 ~~~~~l~L~N~------s~~~Va--------------FKVKTT~p~~Y~VrP~~Gi--I~P~~s~~V~Itl 72 (243)
.....|+|+|. .+=.|. |||..-+-+.|.+.|.-++ |.||+++.|.++-
T Consensus 39 ~~~~~~tl~n~~~~~~~~~w~iyf~~~r~i~~~~~~~~~i~~~~gd~~~l~P~~~f~~~~~g~~~~~~~~~ 109 (858)
T 1c7s_A 39 CNRVLFTLSNDGQAIDGKDWVIYFHSPRQTLRVDNDQFKIAHLTGDLYKLEPTAKFSGFPAGKAVEIPVVA 109 (858)
T ss_dssp EEEEEEEEEECSSCBCCCCCEEEEECSSCEEEECSTTEEEEECSTTEEEEEECTTCCCBCTTEEEEEEEEE
T ss_pred eeEEEEEEEcCCCCcCCCCcEEEEecceeeecCCCCCeeEEEEeCeEEEEecCCCCCccCCCCEEEEEEEe
Confidence 45678888888 222333 4454445566778898887 9999999999964
No 174
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=25.34 E-value=1.5e+02 Score=22.11 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=28.4
Q ss_pred EEEEEEcCCCCeEE---EEEeecC---CCcEEEeCCceeeCCCCEEEE
Q 026107 27 CSLQLSNKTDNYVA---FKVKTTN---PKKYCVRPNTGVVLPRSTCDV 68 (243)
Q Consensus 27 ~~l~L~N~s~~~Va---FKVKTT~---p~~Y~VrP~~GiI~P~~s~~V 68 (243)
..++|.|.+++.+. |+++-.. +..-+.-|..=+|.||.+++|
T Consensus 19 ~fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~Fp~~~~L~pg~~vtI 66 (121)
T 1ifr_A 19 KFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTI 66 (121)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTSCCEEEECCSSCEECTTCEEEE
T ss_pred CEEEEEeCCCCccccCCCEEEEEcCCCccEEEEeCCCcEECCCCEEEE
Confidence 46889998887664 6776552 223344677778999998653
No 175
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=25.29 E-value=1.5e+02 Score=21.12 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=21.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELELLR 211 (243)
Q Consensus 176 ~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~ 211 (243)
+.++.++...+.+|++++..+..+...+++.+..+.
T Consensus 9 ~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 9 ETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 335556666666666666666666666665555543
No 176
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=25.15 E-value=1.1e+02 Score=24.54 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=24.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQELEL 209 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~ 209 (243)
...+++++++..|++++.....+++.++++|+.
T Consensus 135 rtV~kLqkeiD~LEDeL~~eKek~k~i~~eLDq 167 (175)
T 3mud_A 135 DTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQ 167 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777888777777777777777763
No 177
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=24.94 E-value=88 Score=22.11 Aligned_cols=36 Identities=22% Similarity=0.030 Sum_probs=24.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKLQQELELLRRQ 213 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~~ 213 (243)
.|.++..+-.+|.++......+...|+++...|+..
T Consensus 32 AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 32 ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777777777777777766543
No 178
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=24.75 E-value=1.2e+02 Score=20.81 Aligned_cols=26 Identities=4% Similarity=0.175 Sum_probs=11.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQINNKL 203 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~~~l 203 (243)
+..++...|..|+..+...+.+...+
T Consensus 15 ~N~~Le~~v~~le~~Le~s~~~q~~~ 40 (72)
T 3cve_A 15 RNKDLEGQLSEMEQRLEKSQSEQDAF 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555544444444333333
No 179
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=24.58 E-value=1.9e+02 Score=20.48 Aligned_cols=36 Identities=25% Similarity=0.208 Sum_probs=18.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
+.+..++...+..=+....|.+||+.|..+...++.
T Consensus 9 e~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 9 VELQELNDRFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444566666666655555543
No 180
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=24.42 E-value=1.8e+02 Score=21.44 Aligned_cols=24 Identities=4% Similarity=-0.042 Sum_probs=11.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQIN 200 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~ 200 (243)
.++.++.+++..|+.....+.++|
T Consensus 18 ~ei~~L~~ei~eLk~~ve~lEkER 41 (106)
T 4e61_A 18 ETIGSLNEEIEQYKGTVSTLEIER 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444444444443
No 181
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=24.11 E-value=45 Score=20.73 Aligned_cols=17 Identities=29% Similarity=0.858 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhcc
Q 026107 226 VVIVGFIGIILGYLMKK 242 (243)
Q Consensus 226 v~~v~ll~~llg~~~~~ 242 (243)
++++.+++++++.|+++
T Consensus 21 vll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIKR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhheeh
Confidence 44566666667777654
No 182
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=24.02 E-value=2.6e+02 Score=22.10 Aligned_cols=50 Identities=12% Similarity=0.228 Sum_probs=38.5
Q ss_pred eeeEEEEEEcCCCC-----eEEEEEeecCCC-cEEEeCCceeeCCCCEEEEEEEec
Q 026107 24 QISCSLQLSNKTDN-----YVAFKVKTTNPK-KYCVRPNTGVVLPRSTCDVIVTMQ 73 (243)
Q Consensus 24 ~~~~~l~L~N~s~~-----~VaFKVKTT~p~-~Y~VrP~~GiI~P~~s~~V~Itlq 73 (243)
.....|+|+|+.+. -++|.++...-. ---+.|..|.|+++++..|.|-+.
T Consensus 63 ~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vpv~ 118 (174)
T 1yyc_A 63 DYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVK 118 (174)
T ss_dssp EEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEEEE
T ss_pred EEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEEEE
Confidence 46789999999874 578999985433 235778999999999888777653
No 183
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=23.72 E-value=70 Score=22.62 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=17.4
Q ss_pred eEEEEEEcCCCCeEEEEEeecCC
Q 026107 26 SCSLQLSNKTDNYVAFKVKTTNP 48 (243)
Q Consensus 26 ~~~l~L~N~s~~~VaFKVKTT~p 48 (243)
.-+|+++..+.+.|.|||+.|.+
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~ 29 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTP 29 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSC
T ss_pred eEEEEEECCCCCEEEEEECCCCH
Confidence 45777777777888888887765
No 184
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=23.72 E-value=1.4e+02 Score=18.78 Aligned_cols=7 Identities=57% Similarity=0.705 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 026107 205 QELELLR 211 (243)
Q Consensus 205 ~e~~~l~ 211 (243)
||..+|+
T Consensus 32 QEieRL~ 38 (48)
T 3vmx_A 32 QEIERLN 38 (48)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 185
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=23.09 E-value=55 Score=27.67 Aligned_cols=19 Identities=5% Similarity=0.156 Sum_probs=8.8
Q ss_pred CcccchHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEE 192 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e 192 (243)
.+.++.+++.+++..|+.+
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~ 41 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQL 41 (255)
T ss_dssp ---CTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555565555543
No 186
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=22.95 E-value=1.5e+02 Score=22.71 Aligned_cols=49 Identities=8% Similarity=0.204 Sum_probs=37.0
Q ss_pred eeeEEEEEEcCCCC-----eEEEEEeecCCCc-EEEeCCceeeCCCCEEEEEEEe
Q 026107 24 QISCSLQLSNKTDN-----YVAFKVKTTNPKK-YCVRPNTGVVLPRSTCDVIVTM 72 (243)
Q Consensus 24 ~~~~~l~L~N~s~~-----~VaFKVKTT~p~~-Y~VrP~~GiI~P~~s~~V~Itl 72 (243)
.....|+++|+.+. -++|.++...-.- --+.|..|.|.++++..+.|-.
T Consensus 40 ~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vpv 94 (151)
T 1xo8_A 40 EYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPV 94 (151)
T ss_dssp CEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEECC
T ss_pred EEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEEE
Confidence 46789999999874 5789998754433 3567888999999988877744
No 187
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=22.89 E-value=82 Score=26.55 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=13.7
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQE 206 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e 206 (243)
+|+++++++..+..+++ ++.+||++|++.
T Consensus 30 ~Lk~e~~~l~~~~~~~~----~l~~En~rLr~l 58 (255)
T 2j5u_A 30 HLKERLEELAQLESEVA----DLKKENKDLKES 58 (255)
T ss_dssp THHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 45555555544444333 344555555443
No 188
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=22.83 E-value=1.7e+02 Score=20.00 Aligned_cols=18 Identities=22% Similarity=0.100 Sum_probs=9.2
Q ss_pred CcccchHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTE 191 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~ 191 (243)
++-.++.++..+..++++
T Consensus 17 el~~klk~~~ee~~~~~e 34 (71)
T 1s1c_X 17 ELTEKMKKAEEEYKLEKE 34 (71)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555544
No 189
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=22.79 E-value=1.8e+02 Score=21.49 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026107 181 EARALISKLTEEKNSVIQINNKL 203 (243)
Q Consensus 181 e~~~~i~~L~~e~~~~~~q~~~l 203 (243)
++.+...+|+.+...+.++...|
T Consensus 5 ~l~~~~q~l~~~~~~l~~~~~~l 27 (133)
T 1fxk_C 5 EIVAQLNIYQSQVELIQQQMEAV 27 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 190
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=22.72 E-value=52 Score=20.67 Aligned_cols=19 Identities=21% Similarity=0.515 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHH--HHHhcc
Q 026107 224 IYVVIVGFIGIIL--GYLMKK 242 (243)
Q Consensus 224 ~~v~~v~ll~~ll--g~~~~~ 242 (243)
.+.+.+|+++||+ ||++.+
T Consensus 16 aigl~v~f~~~L~PagWVLsh 36 (46)
T 1v54_M 16 AIGLSVTFLSFLLPAGWVLYH 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 3446666666665 676643
No 191
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=22.52 E-value=76 Score=22.29 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=18.3
Q ss_pred eeEEEEEEcCCCCeEEEEEeecCC
Q 026107 25 ISCSLQLSNKTDNYVAFKVKTTNP 48 (243)
Q Consensus 25 ~~~~l~L~N~s~~~VaFKVKTT~p 48 (243)
..-.|++...+...|.|||+.|.+
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~ 39 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTP 39 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSC
T ss_pred CeEEEEEECCCCCEEEEEEccCCH
Confidence 356778887777888899887765
No 192
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=22.22 E-value=1.1e+02 Score=27.85 Aligned_cols=23 Identities=9% Similarity=-0.051 Sum_probs=8.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 026107 178 KSTEARALISKLTEEKNSVIQIN 200 (243)
Q Consensus 178 ~~~e~~~~i~~L~~e~~~~~~q~ 200 (243)
++.++.+.+.+|.++...+..++
T Consensus 11 el~~~~~~~~~l~~~~~~~~~~~ 33 (412)
T 3u06_A 11 EVVHLRQRTEELLRCNEQQAAEL 33 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433333333333
No 193
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.07 E-value=89 Score=25.46 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026107 186 ISKLTEEKNSVIQINNKL 203 (243)
Q Consensus 186 i~~L~~e~~~~~~q~~~l 203 (243)
+..|++|...++..+..|
T Consensus 90 ~~~Lq~el~~l~~~~~~l 107 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQL 107 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555544444444444
No 194
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=22.04 E-value=86 Score=22.93 Aligned_cols=26 Identities=8% Similarity=0.123 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 180 TEARALISKLTEEKNSVIQINNKLQQ 205 (243)
Q Consensus 180 ~e~~~~i~~L~~e~~~~~~q~~~l~~ 205 (243)
.++.++...|++|...+.++.+.|++
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45555666666666666666666653
No 195
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=21.92 E-value=1.1e+02 Score=21.59 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 026107 179 STEARALISKLTEEKNSVIQINN 201 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~~q~~ 201 (243)
|..+.++|..|+.|...+.++..
T Consensus 34 L~ksvdYI~~Lq~e~~r~~e~e~ 56 (83)
T 4ath_A 34 LKASVDYIRKLQREQQRAKDLEN 56 (83)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777665555443
No 196
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=21.89 E-value=2e+02 Score=19.76 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=31.4
Q ss_pred EeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEe
Q 026107 10 IEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTM 72 (243)
Q Consensus 10 i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itl 72 (243)
.+|.+|..+. + .+-.+.++|....+-.|-+.... ..+.+.||++.++.++.
T Consensus 25 F~P~~i~v~~--G--~tV~~~~~n~d~~~H~~~~~~~~--------~~~~~~pg~~~~~~~t~ 75 (100)
T 4hci_A 25 FNPNVITIPI--N--ESTTLLLKNKGKSEHTFTIKKLG--------IDVVVESGKEKNITVKP 75 (100)
T ss_dssp EESSEEEECT--T--SCEEEEEEECSSSCEEEEEGGGT--------EEEEECTTCEEEEEECC
T ss_pred EeCCEEEECC--C--CEEEEEEEcCCCceEEEEEecCC--------cceeecCCcceeEEEec
Confidence 4566665543 2 23566778887666666554322 13568899998888764
No 197
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=21.89 E-value=1e+02 Score=22.11 Aligned_cols=27 Identities=11% Similarity=0.251 Sum_probs=20.5
Q ss_pred CCeeeEEEEEEcCCC-CeEEEEEeecCC
Q 026107 22 RKQISCSLQLSNKTD-NYVAFKVKTTNP 48 (243)
Q Consensus 22 ~~~~~~~l~L~N~s~-~~VaFKVKTT~p 48 (243)
.....-+|++..... ..|-||||.|.|
T Consensus 21 ~~~~~I~LkV~~~dg~~~v~fkIk~~t~ 48 (97)
T 2jxx_A 21 ETSQQLQLRVQGKEKHQTLEVSLSRDSP 48 (97)
T ss_dssp CSCSEEEEEEEESSSSCEEEEEEETTSC
T ss_pred CCCCeEEEEEEcCCCCEEEEEEECCCCh
Confidence 344567888888777 489999998776
No 198
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=21.82 E-value=73 Score=18.82 Aligned_cols=19 Identities=37% Similarity=0.417 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhccC
Q 026107 225 YVVIVGFIGIILGYLMKKI 243 (243)
Q Consensus 225 ~v~~v~ll~~llg~~~~~~ 243 (243)
+...+.|+++.+||++-|+
T Consensus 11 i~~~LvLvGla~Gf~LLki 29 (35)
T 1vf5_F 11 LSFGLIFVGWGLGVLLLKI 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhee
Confidence 3455667788888887654
No 199
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=21.63 E-value=1.2e+02 Score=20.26 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=30.0
Q ss_pred ceEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEE
Q 026107 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIV 70 (243)
Q Consensus 7 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~I 70 (243)
-...+|..|.++. . ..+++.|.+...--|-+....+.. -..+.+.||++..+.+
T Consensus 13 ~~~f~P~~i~v~~--G----d~V~~~n~~~~~H~v~~~~~~~~~----~~~~~~~~g~~~~~~f 66 (91)
T 1bxv_A 13 MLAFEPSTIEIQA--G----DTVQWVNNKLAPHNVVVEGQPELS----HKDLAFSPGETFEATF 66 (91)
T ss_dssp CSSEESSEEEECT--T----CEEEEEECSSCCEEEEETTCGGGC----EEEEECSTTCEEEEEC
T ss_pred ccEEeCCEEEECC--C----CEEEEEECCCCCcEEEEeCCCccC----cccceeCCCCEEEEEe
Confidence 4567787777754 2 245677876544444443311111 0235788998877754
No 200
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=21.57 E-value=1.8e+02 Score=23.53 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=27.9
Q ss_pred EEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEE
Q 026107 28 SLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIV 70 (243)
Q Consensus 28 ~l~L~N~s~~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~I 70 (243)
.|+++|+|..+|.|-=-+..-+.+ . .+.|.|+++..+.+
T Consensus 139 ~l~v~Nptpy~vtl~~l~~~g~~~---~-~~mv~P~s~~~~~l 177 (205)
T 1klf_A 139 SLTLINPTPYYLTVTELNAGTRVL---E-NALVPPMGESTVKL 177 (205)
T ss_dssp EEEEEECSSSCEEEEEEESSSSBC---C-CEEECTTEEEEEEC
T ss_pred EEEEECCCCCEEEEEEEEeCCccc---c-cceEcCCCcceeec
Confidence 699999999999986323333333 2 37999999887754
No 201
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.43 E-value=1.5e+02 Score=26.91 Aligned_cols=26 Identities=8% Similarity=0.031 Sum_probs=13.9
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQI 199 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q 199 (243)
+++++..++..++..+++|+..+.+|
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~~~~ 39 (412)
T 3u06_A 14 HLRQRTEELLRCNEQQAAELETCKEQ 39 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666555555544433
No 202
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.17 E-value=1.1e+02 Score=21.42 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 179 STEARALISKLTEEKNSVIQINNKLQQELELL 210 (243)
Q Consensus 179 ~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l 210 (243)
-.++..-|.+|+.|.+.+......|++....|
T Consensus 41 ~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 41 HQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333
No 203
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=21.15 E-value=1e+02 Score=21.46 Aligned_cols=29 Identities=3% Similarity=0.006 Sum_probs=14.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKL 203 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l 203 (243)
|+.++..++..+..-+.++..+..+.+.+
T Consensus 25 Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 25 LEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555454444444444443
No 204
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.05 E-value=1.1e+02 Score=26.88 Aligned_cols=38 Identities=26% Similarity=0.226 Sum_probs=22.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRR 212 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~~~l~~ 212 (243)
++..+....++|..|++.+.++..+...|++++..++.
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666666666666666666666665554
No 205
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=20.98 E-value=82 Score=23.47 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=19.5
Q ss_pred eeEEEEEEcCCCCeEEEEEeecCC
Q 026107 25 ISCSLQLSNKTDNYVAFKVKTTNP 48 (243)
Q Consensus 25 ~~~~l~L~N~s~~~VaFKVKTT~p 48 (243)
..-+|++.......|-||||.|.|
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~ 62 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTH 62 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSC
T ss_pred CeEEEEEEcCCCCEEEEEEccCCh
Confidence 456788888888889999998876
No 206
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A
Probab=20.79 E-value=2.4e+02 Score=21.74 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=25.5
Q ss_pred EEEEEEcCCCC-eEEEEEeecCCCcEEEe--CCce-eeCCCC
Q 026107 27 CSLQLSNKTDN-YVAFKVKTTNPKKYCVR--PNTG-VVLPRS 64 (243)
Q Consensus 27 ~~l~L~N~s~~-~VaFKVKTT~p~~Y~Vr--P~~G-iI~P~~ 64 (243)
-.++.+|.+.. -=-|.+.--.|+-|.++ |.+| .|.|+.
T Consensus 57 i~~~~~N~s~~~is~f~fQaAVPK~~kLqL~ppSg~~L~p~~ 98 (153)
T 1p4u_A 57 VVVSMLNMAPLPVKSIVLQAAAPKSMKVKLQPPSGTELSPFS 98 (153)
T ss_dssp EEEEEEECSSSCBEEEEEEEECBTTSEEEECCCSCSCBCCCB
T ss_pred EEEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCC
Confidence 36677888764 44577777778877666 5555 577755
No 207
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=20.73 E-value=2.1e+02 Score=19.62 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=17.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 175 PQDKSTEARALISKLTEEKNSVIQINNKLQ 204 (243)
Q Consensus 175 l~~~~~e~~~~i~~L~~e~~~~~~q~~~l~ 204 (243)
++.+.++...+|..|=++|..+.++.-.++
T Consensus 8 lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K 37 (90)
T 2d8d_A 8 LRKEVDRVNREILRLLSERGRLVQEIGRLQ 37 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666665555554443
No 208
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=20.46 E-value=1.4e+02 Score=22.51 Aligned_cols=15 Identities=13% Similarity=0.091 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 026107 180 TEARALISKLTEEKN 194 (243)
Q Consensus 180 ~e~~~~i~~L~~e~~ 194 (243)
.++..+|..|+++++
T Consensus 10 ~~L~~~i~~l~~~L~ 24 (122)
T 3viq_A 10 LKLEKEVRNLQEQLI 24 (122)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 209
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=20.37 E-value=2.2e+02 Score=20.80 Aligned_cols=30 Identities=10% Similarity=0.042 Sum_probs=14.9
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 174 EPQDKSTEARALISKLTEEKNSVIQINNKL 203 (243)
Q Consensus 174 ~l~~~~~e~~~~i~~L~~e~~~~~~q~~~l 203 (243)
+++.+.++...+|..|=.+|..+.++.-.+
T Consensus 16 ~lR~~ID~ID~~il~LL~~R~~~~~~I~~~ 45 (114)
T 3rmi_A 16 YLRQSIDNFDITLIHILAERFRCTQAIGRL 45 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554444443
No 210
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.01 E-value=2.4e+02 Score=20.01 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=15.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026107 177 DKSTEARALISKLTEEKNSVIQINNKLQQEL 207 (243)
Q Consensus 177 ~~~~e~~~~i~~L~~e~~~~~~q~~~l~~e~ 207 (243)
.++.++...+..|+++...+.++...|++++
T Consensus 71 ~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 71 LDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544444444443
Done!