BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026108
         (243 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VQ1|A Chain A, Crystal Structure Of N5-Glutamine Methyltransferase,
           Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
           2.80 A Resolution
 pdb|1VQ1|B Chain B, Crystal Structure Of N5-Glutamine Methyltransferase,
           Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
           2.80 A Resolution
          Length = 294

 Score = 35.0 bits (79), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)

Query: 143 IEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRP 174
           +EKR    P  Y++G + +  L   VEEGVF+PRP
Sbjct: 82  VEKRASGYPLHYILGEKEFXGLSFLVEEGVFVPRP 116


>pdb|1NV8|A Chain A, N5-Glutamine Methyltransferase, Hemk
 pdb|1NV8|B Chain B, N5-Glutamine Methyltransferase, Hemk
 pdb|1NV9|A Chain A, Hemk, Apo Structure
          Length = 284

 Score = 35.0 bits (79), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)

Query: 143 IEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRP 174
           +EKR    P  Y++G + +  L   VEEGVF+PRP
Sbjct: 72  VEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRP 106


>pdb|1SG9|A Chain A, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
           N5-Glutamine Methyltransferase
 pdb|1SG9|B Chain B, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
           N5-Glutamine Methyltransferase
 pdb|1SG9|C Chain C, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
           N5-Glutamine Methyltransferase
          Length = 282

 Score = 35.0 bits (79), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)

Query: 143 IEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRP 174
           +EKR    P  Y++G + +  L   VEEGVF+PRP
Sbjct: 70  VEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRP 104


>pdb|2B3T|A Chain A, Molecular Basis For Bacterial Class 1 Release Factor
           Methylation By Prmc
          Length = 276

 Score = 28.9 bits (63), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 147 KPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVD 181
           +P  +L G   +  L L V     IPRP+TE +V+
Sbjct: 66  EPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVE 100


>pdb|1T43|A Chain A, Crystal Structure Analysis Of E.Coli Protein
           (N5)-Glutamine Methyltransferase (Hemk)
          Length = 277

 Score = 28.9 bits (63), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 147 KPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVD 181
           +P  +L G   +  L L V     IPRP+TE +V+
Sbjct: 66  EPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVE 100


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,861,772
Number of Sequences: 62578
Number of extensions: 211339
Number of successful extensions: 652
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 5
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)