BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026108
(243 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7NJS7|PRMC_GLOVI Release factor glutamine methyltransferase OS=Gloeobacter violaceus
(strain PCC 7421) GN=prmC PE=3 SV=1
Length = 286
Score = 94.4 bits (233), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 82/144 (56%), Gaps = 10/144 (6%)
Query: 99 ELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHW 158
E+++L+E L +LG ++ R ++L LW++RIE+ P QYL+G HW
Sbjct: 25 EIDYLIEAVTGLDRLRVRLGGPQALEAHR-----EKLAALWRRRIEEAMPLQYLLGTAHW 79
Query: 159 RDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG 218
RDL L V V IPRPE+E +VD+ D R G R VDLGTGSGAIA+ +AR L
Sbjct: 80 RDLQLQVNPAVLIPRPESEALVDVAVD-FCRSCAGARV---VDLGTGSGAIAVAVARAL- 134
Query: 219 SKGSIIAVDLNPLAAAVAAFNAQR 242
++ AVD + A VA N +R
Sbjct: 135 PGATVWAVDASEAALVVAGANIER 158
>sp|Q8DHV7|PRMC_THEEB Release factor glutamine methyltransferase OS=Thermosynechococcus
elongatus (strain BP-1) GN=prmC PE=3 SV=1
Length = 291
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 17/177 (9%)
Query: 66 LKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQS 125
L++W +WA+ + + P+ REL + L ++ +
Sbjct: 6 LQRWWHWAQGIIPA-----------PERESGLRELKQFLRAFTGLSPL--EITLRRFPPQ 52
Query: 126 VRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSD 185
+ L++ L EL W++R ++R P QYL+G HW DL L V V IPRPETE +L++
Sbjct: 53 IHLKLPLTELQERWQRRWQERVPLQYLIGVAHWHDLELVVTPSVLIPRPETE---ELLAV 109
Query: 186 VLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
V + G W+DLGTGSGAIAIG+AR+ + I AVD + A VA N Q+
Sbjct: 110 VAATVPPWQQQGHWLDLGTGSGAIAIGLARLFPA-ALIHAVDCSSEALEVAQVNIQK 165
>sp|P74003|PRMC_SYNY3 Release factor glutamine methyltransferase OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=prmC PE=3 SV=1
Length = 299
Score = 90.5 bits (223), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 83/144 (57%), Gaps = 4/144 (2%)
Query: 99 ELNWLVEDSLEDPSLIPQLGFQNNSQ-SVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEH 157
ELNWL++ + L L Q+ + + L+ + + W++R+E++ P QYL+G
Sbjct: 31 ELNWLLQGWTDLDRLT--LRLQDFAHREIALQETWENIQRGWRRRVEEKYPVQYLLGQTQ 88
Query: 158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL 217
WRD V+ V + V IPRPETEL++D+V + WVDLGTGSGAIA+G+A
Sbjct: 89 WRDFVIKVTDDVLIPRPETELIIDIVQHEHSALSPSNCADHWVDLGTGSGAIALGLAATF 148
Query: 218 GSKGSIIAVDLNPLAAAVAAFNAQ 241
+ + AVD + A A+A NAQ
Sbjct: 149 -PQALVHAVDCSGSALAIARENAQ 171
>sp|Q9CHX0|PRMC_LACLA Release factor glutamine methyltransferase OS=Lactococcus lactis
subsp. lactis (strain IL1403) GN=prmC PE=3 SV=1
Length = 270
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 65/101 (64%), Gaps = 6/101 (5%)
Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV 200
+R+ + +P QY+VG +RDL L V+E V IPRPETE +V+++ + + D L+ +
Sbjct: 56 KRLHQNEPPQYIVGWAEFRDLKLKVDERVLIPRPETEELVEMI--LAENEKDSLK---IL 110
Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241
D+GTGSGAIAI +A+ S+ A D++ A +AA NA+
Sbjct: 111 DIGTGSGAIAISLAQA-RENWSVKASDISKEALTLAAENAE 150
>sp|A9WBM9|PRMC_CHLAA Release factor glutamine methyltransferase OS=Chloroflexus
aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
GN=prmC PE=3 SV=1
Length = 283
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV 200
+R R+P YL+G + L L V+ V IPRPETEL+V+L R N
Sbjct: 61 ERRANREPVAYLIGHREFFGLDLFVDRRVLIPRPETELLVELTLKEAQRFNHT--PLIIA 118
Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
D+GTGSGAIAI +A L I VD++P A AVAA N R
Sbjct: 119 DIGTGSGAIAIALAMHL-PHALIYGVDISPDALAVAAINVTR 159
>sp|Q9KQ26|PRMC_VIBCH Release factor glutamine methyltransferase OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=prmC PE=3 SV=1
Length = 286
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 55/97 (56%), Gaps = 6/97 (6%)
Query: 147 KPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGS 206
+P Y++G + L L V IPRP+TE +V+ L D L DG +DLGTG+
Sbjct: 70 EPMAYILGEREFWSLPLKVSPSTLIPRPDTERLVE-----LALDKAALIDGELLDLGTGT 124
Query: 207 GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243
GAIA+ +A L ++ + +DL P AA +A NA R+
Sbjct: 125 GAIALALASELPTR-QVTGIDLRPEAAELARENATRL 160
>sp|B8E004|PRMC_DICTD Release factor glutamine methyltransferase OS=Dictyoglomus turgidum
(strain Z-1310 / DSM 6724) GN=prmC PE=3 SV=1
Length = 282
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 9/97 (9%)
Query: 148 PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGF--WVDLGTG 205
P Y++ + + D+ L VE GV IPR ETE+++++ D + L++G+ V++G G
Sbjct: 69 PLNYIIEKKQFYDIELFVERGVLIPRSETEILIEVAKDTI------LKEGYKKIVEIGVG 122
Query: 206 SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
SG I+I +A+ I A D++P A VA FNA++
Sbjct: 123 SGNISITLAKEFKD-IKIYACDISPEAIKVARFNAKK 158
>sp|A6H162|PRMC_FLAPJ Release factor glutamine methyltransferase OS=Flavobacterium
psychrophilum (strain JIP02/86 / ATCC 49511) GN=prmC
PE=3 SV=1
Length = 285
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 62/102 (60%), Gaps = 8/102 (7%)
Query: 142 RIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDN---DGLRDGF 198
+++++KP QY++G + L V E IPRPETE +V+ + +++N L++
Sbjct: 64 QLKEQKPIQYILGETQFFGLPFYVNENTLIPRPETEELVEWI----IKENLKISSLKNLK 119
Query: 199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240
+D+GTGSG IAI +A+ L + S+ A+D++ A A A NA
Sbjct: 120 ILDIGTGSGCIAISLAKNLPN-ASVFAIDVSDKALATAQKNA 160
>sp|P45873|PRMC_BACSU Release factor glutamine methyltransferase OS=Bacillus subtilis
(strain 168) GN=prmC PE=3 SV=1
Length = 288
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 69/119 (57%), Gaps = 9/119 (7%)
Query: 130 IGLDELYGLWKQRIEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDV 186
IG DELY +K+ +E K P QY++G E + V + V IPRPETE +V + +
Sbjct: 48 IGEDELY-RFKRHVEMHKEGVPVQYIIGKEFFYGREFMVNDDVLIPRPETEEVVFHLLEK 106
Query: 187 L--VRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243
V DG + VD+GTGSGAIA+ +A + S+ AVD++ A VA+ NA+++
Sbjct: 107 YRSVFSEDGKLE--VVDVGTGSGAIAVTLA-LENQSFSVSAVDISKEALQVASANAEKL 162
>sp|Q8R619|PRMC_FUSNN Release factor glutamine methyltransferase OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=prmC PE=3 SV=1
Length = 354
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 142 RIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVD 201
R +KRKP QY++G + L + EGV IPR +TE++V+ L+R+ + + +D
Sbjct: 117 RAKKRKPLQYILGEWEFYGLPFKMSEGVLIPRADTEILVEQCIQ-LMRE---VEEPNILD 172
Query: 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239
+G+GSGAI+I +A L S S+ +D+N A +A N
Sbjct: 173 IGSGSGAISIAVANELKS-SSVTGIDINEKAIKLAIEN 209
>sp|A0R213|PRMC_MYCS2 Release factor glutamine methyltransferase OS=Mycobacterium
smegmatis (strain ATCC 700084 / mc(2)155) GN=prmC PE=3
SV=1
Length = 281
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 8/97 (8%)
Query: 145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVD-LVSDVLVRDNDGLRDGFWVDLG 203
KR P Q+LVG + L L V GVFIPRPETE +++ V+ L RD VDL
Sbjct: 65 KRIPLQHLVGTAAFGPLTLEVGPGVFIPRPETESLLEWAVAQQLP------RDAVIVDLC 118
Query: 204 TGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240
TG+GA+A+ +A+ + +IAV+ +P A A NA
Sbjct: 119 TGTGALALALAQ-HRPQARVIAVEDSPAALEYARCNA 154
>sp|Q8DPZ3|PRMC_STRR6 Release factor glutamine methyltransferase OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=prmC PE=3 SV=1
Length = 279
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 59/101 (58%), Gaps = 6/101 (5%)
Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV 200
Q++ KP QY++G + + L V+E V IPRPETE +V+L+ + N + +
Sbjct: 61 QQLAAHKPAQYIIGQADFYGMHLKVDERVLIPRPETEELVELILTENLETNLSV-----L 115
Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241
D+GTGSGAIA+ +A+ S+ A D++ A +A NA+
Sbjct: 116 DIGTGSGAIALALAKN-RPDWSVTAADISQEALDLARENAK 155
>sp|Q2RFW1|PRMC_MOOTA Release factor glutamine methyltransferase OS=Moorella
thermoacetica (strain ATCC 39073) GN=prmC PE=3 SV=1
Length = 283
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
Query: 137 GLWKQRIEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDG 193
G + Q I++R P QYL G + + L V V IPR +TE++V+ V + L D
Sbjct: 55 GRFWQAIDRRAAGYPLQYLTGHQEFMSLDFKVTPAVLIPRQDTEVVVEAVLERL----DP 110
Query: 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243
D GTGSGAIA+ +A L + + A D++P A VA NA+++
Sbjct: 111 CESYTIADCGTGSGAIALSLAHYL-PRARVYATDISPAALTVAQENARKL 159
>sp|Q8G3P4|PRMC_BIFLO Release factor glutamine methyltransferase OS=Bifidobacterium
longum (strain NCC 2705) GN=prmC PE=3 SV=1
Length = 294
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 142 RIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVD 201
R KR+P QY+ G +R L L V GVFIPRPETE +V D L + +G+ VD
Sbjct: 66 RRAKREPLQYITGHAPFRYLDLKVGPGVFIPRPETETVVQAGLDWLTK--NGMIHPCVVD 123
Query: 202 LGTGSGAIAIG-IARVLGSKGSIIAVDLNPLAA 233
L GSGAI + ++ V GS+ + AV+L+P A
Sbjct: 124 LCAGSGAIGLSVVSEVPGSQ--VWAVELSPNTA 154
>sp|Q8K9W9|PRMC_BUCAP Release factor glutamine methyltransferase OS=Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg) GN=prmC PE=3 SV=1
Length = 275
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 16/145 (11%)
Query: 109 EDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKR----------KPFQYLVGCEHW 158
E+P ++ + + R+ I +++ L K++ +K +P Y++G + +
Sbjct: 18 ENPRYEAEILLSHVLKCTRIAIIINQEIDLSKEQYQKLNNFIYRRSIGEPIAYIIGKKEF 77
Query: 159 RDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG 218
L L V IPRP+TE++V+ +L + N R +DLGTGSGAIA+ +A V
Sbjct: 78 WSLSLCVSYKTLIPRPDTEILVE---KILSKVNKNFRSI--LDLGTGSGAIALALASVC- 131
Query: 219 SKGSIIAVDLNPLAAAVAAFNAQRI 243
S +II VD + A +A N ++
Sbjct: 132 SHWNIIGVDNSYSALKIAKINGLKL 156
>sp|Q7CIA2|PRMC_YERPE Release factor glutamine methyltransferase OS=Yersinia pestis
GN=prmC PE=3 SV=1
Length = 276
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV 200
R E+ +P YLVG + L LSV IPRP+TE +V+ L + +
Sbjct: 60 NRREQGEPIAYLVGEREFWSLPLSVSSATLIPRPDTECLVEQALARLPAMPCRI-----L 114
Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243
DLGTG+GAIA+ +A ++IAVD+N A A+A NA+++
Sbjct: 115 DLGTGTGAIALALA-TERRDCAVIAVDINADAVALARHNAEKL 156
>sp|Q7W022|PRMC_BORPE Release factor glutamine methyltransferase OS=Bordetella pertussis
(strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=prmC
PE=3 SV=1
Length = 270
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 10/109 (9%)
Query: 139 WKQRIEKR---KPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLR 195
W+Q +R +P YL+G + ++ V IPRP+TEL+V+ L G
Sbjct: 49 WRQLAARRLAGEPMAYLLGGREFMGHWYALTPDVLIPRPDTELLVETALHWL----QGRA 104
Query: 196 DGFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQRI 243
+DLGTGSGAIA+ +A LG + + A DL+ A AVA NAQR+
Sbjct: 105 APRVLDLGTGSGAIAVSVA--LGCPQAEVTATDLSAAALAVAEGNAQRL 151
>sp|Q9K4E3|PRMC_STRCO Release factor glutamine methyltransferase OS=Streptomyces
coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=prmC
PE=3 SV=1
Length = 281
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 142 RIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVD 201
R E R+P Q++ G ++R L L V GVF+PRPETE +V D VR D + VD
Sbjct: 60 RREAREPLQHITGRAYFRYLELQVGPGVFVPRPETESVVGWAIDA-VRAMDVVEPCI-VD 117
Query: 202 LGTGSGAIAIGIARVLGSKGSIIAVDLN 229
L TGSGAIA+ +A+ + + + AV+L+
Sbjct: 118 LCTGSGAIALALAQEV-PRSRVHAVELS 144
>sp|Q83AD8|PRMC_COXBU Release factor glutamine methyltransferase OS=Coxiella burnetii
(strain RSA 493 / Nine Mile phase I) GN=prmC PE=3 SV=1
Length = 277
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 61/103 (59%), Gaps = 6/103 (5%)
Query: 140 KQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
K+R+ K +P Y++G + + L L V V IPRPETE++V+ + L +D + LR
Sbjct: 62 KRRL-KGEPIAYILGQKEFWSLNLKVTPDVLIPRPETEMLVEWILKNLPKD-EKLR---I 116
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
DLGTGSGA+A+ IA V +I A D + A +A NA++
Sbjct: 117 ADLGTGSGAVALAIA-VERPHWTIDATDNSQAALKIAEINAKQ 158
>sp|Q6MU88|PRMC_MYCMS Release factor glutamine methyltransferase OS=Mycoplasma mycoides
subsp. mycoides SC (strain PG1) GN=prmC PE=3 SV=1
Length = 282
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 60/111 (54%), Gaps = 9/111 (8%)
Query: 132 LDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDN 191
+D++ L KQ P Y++ +++ + V + V IPR E+EL++D VS+ + +N
Sbjct: 55 IDQILDLLKQNY----PLAYILKSKYFYSNIFFVNKDVLIPRNESELIIDHVSEFVKNNN 110
Query: 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
D L VDL TGSG + I A +L + +I D++ + VA N ++
Sbjct: 111 DLL----IVDLCTGSGCLGISCA-LLNDQNKVILTDISYKSLKVANKNIKK 156
>sp|Q7ULT2|PRMC_RHOBA Release factor glutamine methyltransferase OS=Rhodopirellula
baltica (strain SH1) GN=prmC PE=3 SV=1
Length = 296
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 148 PFQYLVGCEHWRDLVLSVEEGVFIPRPETE-LMVDLVSDVLVRDNDGLRDGFWVDLGTGS 206
P LVG + + + V+E V +PRPETE L+++ + + R +D +D+GTGS
Sbjct: 78 PVAQLVGYREFYSISIRVDENVLVPRPETEHLVIEAIDQIKGRLSDRPSPTV-LDIGTGS 136
Query: 207 GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243
GAIA+ IA+ L K + AVD++ A +A +N + +
Sbjct: 137 GAIAVAIAKSL-PKTQVTAVDISLTALDIAKWNVENL 172
>sp|P45253|PRMC_HAEIN Release factor glutamine methyltransferase OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=prmC PE=3 SV=1
Length = 292
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 12/134 (8%)
Query: 117 LGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPET 176
L F + ++R+ +L L +R+ K +P Y++G + + L L+V +G IPRP+T
Sbjct: 43 LAFDDTEIDEKVRL---KLTALLDRRL-KGEPIAYILGEKEFWSLPLNVSKGTLIPRPDT 98
Query: 177 ELMVDLVSDVLVRDNDGLRDGFWV-DLGTGSGAIAIGIARVLGSKG-------SIIAVDL 228
E++V+ + + + F + DLGTG+GAIA+ +A L II VDL
Sbjct: 99 EILVEKALQIALEKLEENPPHFRILDLGTGTGAIALALASELAPICQKRHIPLEIIGVDL 158
Query: 229 NPLAAAVAAFNAQR 242
A+A NA+R
Sbjct: 159 MSDVVALAQSNAER 172
>sp|B5YIQ8|PRMC_THEYD Release factor glutamine methyltransferase OS=Thermodesulfovibrio
yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
GN=prmC PE=3 SV=1
Length = 279
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 10/75 (13%)
Query: 145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRD----NDGLRDGFWV 200
K++P QY++G ++ ++ + V GV IPRPETE+ LV VL R N G R +
Sbjct: 60 KKEPLQYIIGECYFYNIKIKVGRGVLIPRPETEI---LVEQVLERQKLISNTGNR---IL 113
Query: 201 DLGTGSGAIAIGIAR 215
DL TGSG IA+ I +
Sbjct: 114 DLCTGSGCIALAIGK 128
>sp|Q5E6T2|PRMC_VIBF1 Release factor glutamine methyltransferase OS=Vibrio fischeri
(strain ATCC 700601 / ES114) GN=prmC PE=3 SV=1
Length = 284
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 9/116 (7%)
Query: 129 RIGLDELYGLWKQRIEKR---KPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSD 185
+I DE G + +E+R +P Y+VG + L L V IPRP+TE +V++ D
Sbjct: 49 KIVSDEELGNFNALLERRLAGEPIAYIVGYREFWSLPLKVSPTTLIPRPDTERLVEVALD 108
Query: 186 VLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241
L + + +DLGTG+GAIA+ IA + + ++I VD A +A NA+
Sbjct: 109 HLTPNAQSI-----LDLGTGTGAIALAIASEMPTL-NVIGVDYQDDAVELAKGNAK 158
>sp|Q7VDL7|PRMC_PROMA Release factor glutamine methyltransferase OS=Prochlorococcus
marinus (strain SARG / CCMP1375 / SS120) GN=prmC PE=3
SV=1
Length = 293
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 138 LWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGL-RD 196
+W + + + P Q+LVG WRD L V IPR ETE+++D+ L + + GL +
Sbjct: 67 IWMRHLSDQIPLQHLVGKCPWRDFELKVNSSALIPRQETEILIDI---ALKKVDAGLMKY 123
Query: 197 GFWVDLGTGSG 207
G W DLGTGSG
Sbjct: 124 GRWADLGTGSG 134
>sp|Q10602|PRMC_MYCTU Release factor glutamine methyltransferase OS=Mycobacterium
tuberculosis GN=prmC PE=3 SV=2
Length = 304
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 11/114 (9%)
Query: 133 DELYGLWKQRI---EKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVR 189
DE +G ++ + +R P Q+L+G + +VL V GVF+PRPETE ++ + +
Sbjct: 49 DEFFGRYRDIVTARARRVPLQHLIGTVSFGPVVLHVGPGVFVPRPETEAILAWATAQSLP 108
Query: 190 DNDGLRDGFWVDLGTGSGAIAIGIARV---LGSKGSIIAVDLNPLAAAVAAFNA 240
VD TGSGA+A+ +A+ LG K II +D + A A NA
Sbjct: 109 ARP-----LIVDACTGSGALAVALAQHRANLGLKARIIGIDDSDCALDYARRNA 157
>sp|Q8PC99|PRMC_XANCP Release factor glutamine methyltransferase OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=prmC PE=3 SV=1
Length = 283
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 136 YGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLR 195
+G +R + +P YL G + L L+V IPR +TE +V+L + L G+R
Sbjct: 57 FGALVERRHQGEPVAYLTGSRGFWTLDLAVSTATLIPRADTETLVELALERL-ELTAGVR 115
Query: 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241
VDLGTGSGAIA+ IA + +IA D + A A+A NA
Sbjct: 116 ---VVDLGTGSGAIALAIASER-PQAQLIATDASADALAIARHNAH 157
>sp|Q9RXR2|PRMC_DEIRA Release factor glutamine methyltransferase OS=Deinococcus
radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 /
LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
GN=prmC PE=3 SV=1
Length = 278
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 7/113 (6%)
Query: 130 IGLDELYGLWK--QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVL 187
IG D W +R R P Q+L G W + L+ + +PRPETE ++ L + L
Sbjct: 49 IGPDAEARAWDSIERRAARVPLQHLTGEVEWGGVRLTSDARALVPRPETEWLLHLALEEL 108
Query: 188 VRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240
R + +D+GTG+GA+A+G+ + + + A DL+P A ++A NA
Sbjct: 109 RR----VEKPRVLDVGTGTGALALGLKAAI-PQAEVTATDLSPEALSLARENA 156
>sp|Q8A1D7|PRMC_BACTN Release factor glutamine methyltransferase OS=Bacteroides
thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC
10582 / E50 / VPI-5482) GN=prmC PE=3 SV=1
Length = 278
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 142 RIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVD 201
R++K +P QY+ G + V GV IPRPET +VDL+ V++N R +D
Sbjct: 62 RLQKNEPIQYIRGYAEFCGRNFRVAPGVLIPRPETAELVDLI----VKENPDARR--LLD 115
Query: 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243
+GTGSG IAI + + L + A D++ A A+A N + +
Sbjct: 116 IGTGSGCIAISLDKNL-PDAKVDAWDISEEALAIARKNNEEL 156
>sp|Q63QE9|PRMC_BURPS Release factor glutamine methyltransferase OS=Burkholderia
pseudomallei (strain K96243) GN=prmC PE=3 SV=1
Length = 285
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 140 KQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
+ R +P L G + L + V IPRPETEL+V+ D + DG+
Sbjct: 60 QARRAAGEPIAQLTGAREFFGLEFDITPDVLIPRPETELLVETALDAI----DGIASPCV 115
Query: 200 VDLGTGSGAIAIGI------ARVLGSKGSIIAVDL 228
+DLGTGSGAIA+ I ARV + S+ A+D+
Sbjct: 116 LDLGTGSGAIAVSIASERPDARVWALERSVAALDV 150
>sp|O66506|PRMC_AQUAE Release factor glutamine methyltransferase OS=Aquifex aeolicus
(strain VF5) GN=prmC PE=3 SV=1
Length = 281
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 7/106 (6%)
Query: 138 LWKQRIEKRK--PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLR 195
+KQ E++K P Y++G V V++GV +PRPETE++++ +++ +D + +
Sbjct: 58 FFKQMKERKKGIPTAYVIGEWECMGRVFKVKKGVLVPRPETEILIERTLELIPQDREMV- 116
Query: 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241
GF +LG+G+G I+I + + K + A D+NP A + NA+
Sbjct: 117 -GF--ELGSGTGCISINLL-IERPKLVMYATDVNPDAVELTKENAK 158
>sp|Q1II29|PRMC_KORVE Release factor glutamine methyltransferase OS=Koribacter versatilis
(strain Ellin345) GN=prmC PE=3 SV=1
Length = 280
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 147 KPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW--VDLGT 204
+P QY+ G + + V V IPRPETE +++ V ++ R+ W +D+GT
Sbjct: 68 EPAQYITGHQEFYGRDFLVSPAVLIPRPETEHLIEAVLELAPREVR------WEVLDVGT 121
Query: 205 GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243
GSG IA +A+ + + AVD++P A +A NA R+
Sbjct: 122 GSGCIAATLAKEF-PRMKVTAVDISPEALQIAQANAARL 159
>sp|Q748B2|PRMC_GEOSL Release factor glutamine methyltransferase OS=Geobacter
sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
GN=prmC PE=3 SV=1
Length = 284
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 142 RIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVD 201
R KR+P QY++G + + L V V IPR +TE++V+ + L R +D
Sbjct: 70 RRAKREPLQYILGTQEFCGLDFVVTPSVLIPRHDTEVIVE---EALRRAPHA---AAVLD 123
Query: 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
+G GSG IA+ +A+ L ++ V+ +P A A+A NA+R
Sbjct: 124 IGVGSGCIAVALAKQL-PHAQVVGVEQSPGAIALAQRNAER 163
>sp|P57269|PRMC_BUCAI Release factor glutamine methyltransferase OS=Buchnera aphidicola
subsp. Acyrthosiphon pisum (strain APS) GN=prmC PE=3
SV=1
Length = 277
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 9/114 (7%)
Query: 133 DELYGLWKQRIEKR---KPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVR 189
++ Y I +R +P Y++ + + L L V IPRP+TE++V+ +
Sbjct: 49 EKQYKYLNHLIHRRSLGEPIAYIIKEKEFWSLSLCVSYDTLIPRPDTEILVERALSKIKS 108
Query: 190 DNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243
++ + +DLGTG GAIA+ +A + S +II +D + A A+A NA ++
Sbjct: 109 NSACI-----LDLGTGCGAIALALASI-NSNWNIIGIDKSENALAIARINASKL 156
>sp|Q8KCD5|PRMC_CHLTE Release factor glutamine methyltransferase OS=Chlorobium tepidum
(strain ATCC 49652 / DSM 12025 / TLS) GN=prmC PE=3 SV=1
Length = 294
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 14/153 (9%)
Query: 100 LNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE----------KRKPF 149
+ + E +++P L +L + RL++ LD L + +E + +P
Sbjct: 17 IAFFAEKKIDEPRLSAELLLGHVLGLQRLQLYLDHERPLTLKELEAFRAACRERLQGRPV 76
Query: 150 QYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDN-DGLRDGFWVDLGTGSGA 208
QY+ G + V+E V IPRPETEL+++ + L D +D+GTGSG
Sbjct: 77 QYIAGEAFFYGYQFFVDERVLIPRPETELVLEHAMERLAASGLDSADSPSILDVGTGSGC 136
Query: 209 IAIGIA-RVLGSKGSIIAVDLNPLAAAVAAFNA 240
IAI +A R+ G++ + A D++ A VA NA
Sbjct: 137 IAITLALRLPGAR--VTAADVSADALDVARRNA 167
>sp|Q9WYV8|PRMC_THEMA Release factor glutamine methyltransferase OS=Thermotoga maritima
(strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
GN=prmC PE=1 SV=1
Length = 282
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 62/103 (60%), Gaps = 9/103 (8%)
Query: 143 IEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
+EKR P Y++G + + L VEEGVF+PRPETE +V+L +++ + G++
Sbjct: 70 VEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRK--YGIKT--V 125
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
D+GTGSGAI + +A+ S + A D++ A +A NA+R
Sbjct: 126 ADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAER 166
>sp|Q97F67|PRMC_CLOAB Release factor glutamine methyltransferase OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=prmC PE=3 SV=1
Length = 285
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 144 EKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLG 203
+K+ P +Y+ + L VE+GV IPRP+TE++V+ V + + +N D+
Sbjct: 65 KKKMPIRYITEKCEFMGLDFHVEKGVLIPRPDTEILVEAVLEYIELNNYKK----VCDVC 120
Query: 204 TGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241
TGSGAI + IA+ ++ D++P A V+ N Q
Sbjct: 121 TGSGAIGLSIAK-YAKDVEVLCSDISPDAIRVSKINRQ 157
>sp|Q8F987|PRMC_LEPIN Release factor glutamine methyltransferase OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar Lai
(strain 56601) GN=prmC PE=3 SV=1
Length = 286
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 122 NSQSVRLRIGLDELYG-----LWKQRIEKR---KPFQYLVGCEHWRDLVLSVEEGVFIPR 173
N Q V+L + + L +++RI +R KP Y+ + + + + V E V IPR
Sbjct: 39 NLQRVKLYVNFERLLNETEKNAYRERILERSKNKPTAYITSQKAFYNSIFFVNENVLIPR 98
Query: 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKG-SIIAVDLNPLA 232
PETE +LV VL + + +DL TGSG IGI+ L K +I D++ A
Sbjct: 99 PETE---ELVEKVLSDFKGNIGEQNVLDLCTGSG--CIGISLKLARKDWNITLSDISKEA 153
Query: 233 AAVAAFNAQRI 243
VA NA +I
Sbjct: 154 LEVATKNAIQI 164
>sp|P0DJB1|PRMC_CORGL Release factor glutamine methyltransferase OS=Corynebacterium
glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /
LMG 3730 / NCIMB 10025) GN=prmC PE=3 SV=1
Length = 279
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 148 PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSG 207
P Q+++G L L V GVFIPRPETE++ D + D + + VDL TGSG
Sbjct: 66 PLQHILGTAPMGPLDLHVGPGVFIPRPETEVLADWAVRQVAGDVEKRK---IVDLCTGSG 122
Query: 208 AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239
A+A I L ++ AV+L+P AA A N
Sbjct: 123 ALAAYIGHAL-IDATLYAVELDPGAATWAQRN 153
>sp|A4QDG2|PRMC_CORGB Release factor glutamine methyltransferase OS=Corynebacterium
glutamicum (strain R) GN=prmC PE=3 SV=1
Length = 279
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 148 PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSG 207
P Q+++G L L V GVFIPRPETE++ D + D + + VDL TGSG
Sbjct: 66 PLQHILGTAPMGPLDLHVGPGVFIPRPETEVLADWAVRQVAGDVEKRK---IVDLCTGSG 122
Query: 208 AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239
A+A I L ++ AV+L+P AA A N
Sbjct: 123 ALAAYIGHAL-IDATLYAVELDPGAATWAQRN 153
>sp|Q81JX2|PRMC_BACAN Release factor glutamine methyltransferase OS=Bacillus anthracis
GN=prmC PE=3 SV=1
Length = 283
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 148 PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDG--FWVDLGTG 205
P QY++G E + V E V IPRPETE +L+ VL R D D+GTG
Sbjct: 67 PIQYMIGHEMFYGRSFFVNEEVLIPRPETE---ELIVGVLERIERHFGDEKLHVADIGTG 123
Query: 206 SGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAFNAQRI 243
SGAI+I +A L +K + VD+ + VA NA+ +
Sbjct: 124 SGAISITLA--LENKNLHVYTVDIAQESIEVAKENAKTL 160
>sp|Q68VR6|RFTRM_RICTY Bifunctional methyltransferase OS=Rickettsia typhi (strain ATCC
VR-144 / Wilmington) GN=prmC/trmB PE=3 SV=1
Length = 518
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 16/117 (13%)
Query: 138 LWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDND----- 192
L ++R+E +P Y+ G + + V + V IPR +TE+++D+V ++V ND
Sbjct: 62 LLERRLE-HEPIAYITGIKEFYSREFIVNKHVLIPRIDTEILIDVVIGLVVSRNDLNTCS 120
Query: 193 ---------GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240
++ ++LGTGSG IAI + L + S+IA D++ A VA N
Sbjct: 121 KLKSLDSVKTIQHYNILELGTGSGCIAISLLCELPN-TSVIATDISVDAIKVAKSNT 176
>sp|Q831F7|PRMC_ENTFA Release factor glutamine methyltransferase OS=Enterococcus faecalis
(strain ATCC 700802 / V583) GN=prmC PE=3 SV=1
Length = 277
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 148 PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSG 207
P QYL+G + V E IPRPETE +LV L + D VD+GTG+G
Sbjct: 69 PAQYLLGQAEFYGHSFIVNEHTLIPRPETE---ELVERCLKANPDTPLT--VVDVGTGTG 123
Query: 208 AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243
AIA+ + ++ +IA+DL+ A VA NAQ +
Sbjct: 124 AIAVSL-KLARPNWRVIAIDLSEEALTVAKQNAQAL 158
>sp|Q32GZ5|PRMC_SHIDS Release factor glutamine methyltransferase OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=prmC PE=3 SV=1
Length = 277
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 147 KPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGS 206
+P +L G + L L V IPRP+TE LV L R + + +DLGTG+
Sbjct: 66 EPIAHLTGVREFWSLPLFVSPATLIPRPDTEC---LVEQALARLPE--QPCRILDLGTGT 120
Query: 207 GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243
GAIA+ +AR I AVD P A A+A NAQ +
Sbjct: 121 GAIALALARE-RPDCEITAVDRMPDAVALAQRNAQHL 156
>sp|Q814U1|PRMC_BACCR Release factor glutamine methyltransferase OS=Bacillus cereus
(strain ATCC 14579 / DSM 31) GN=prmC PE=3 SV=1
Length = 283
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 148 PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDG--FWVDLGTG 205
P QY++G E + V E V IPRPETE +L+ VL R D D+GTG
Sbjct: 67 PIQYMIGYEIFYGRSFFVNEEVLIPRPETE---ELIVGVLERIERHFGDEKLHVADIGTG 123
Query: 206 SGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAFNAQ 241
SGAI+I +A L +K + VD+ + VA NA+
Sbjct: 124 SGAISITLA--LENKNLHVYTVDIAQESIEVAKENAK 158
>sp|Q9HVC8|PRMC_PSEAE Release factor glutamine methyltransferase OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=prmC PE=3 SV=1
Length = 276
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 133 DELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDND 192
+E + W R +P Y++G + + L L V IPRP+TEL+V+ L D
Sbjct: 51 NERFDDWIARRRNGEPVAYILGHQGFWSLDLEVAPHTLIPRPDTELLVETALATLAADTA 110
Query: 193 GLRDGFWVDLGTGSGAIAIGIA--RVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243
+ +DLGTG+GAIA+ +A R L ++ AVD A A+A N QR+
Sbjct: 111 TV-----LDLGTGTGAIALALASERPL---WTVTAVDRVEEAVALAERNRQRL 155
>sp|Q921L7|HEMK1_MOUSE HemK methyltransferase family member 1 OS=Mus musculus GN=Hemk1
PE=2 SV=2
Length = 340
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 132 LDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDN 191
+ EL G R +R P QY++G ++ L L + VFIPRPETE +V+ V + + +
Sbjct: 98 IQELCG----RRLQRMPVQYILGEWDFQGLSLKMVPPVFIPRPETEELVEWVLEEVAQRP 153
Query: 192 DGLR--DG-FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243
+R DG +++G GSGAI + + L K ++AVD A ++ NAQR+
Sbjct: 154 HAVRAQDGPLILEVGCGSGAITLSLLSQL-PKSRVVAVDKEEAAVSLTHENAQRL 207
>sp|Q6F0I4|PRMC_MESFL Release factor glutamine methyltransferase OS=Mesoplasma florum
(strain ATCC 33453 / NBRC 100688 / NCTC 11704 / L1)
GN=prmC PE=3 SV=1
Length = 300
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 147 KPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGS 206
KP Y++G + +R + V + IPR ETEL+VD V++ + N+ + +DL GS
Sbjct: 80 KPLAYILGYKIFRTHKILVNKNTLIPRMETELIVDYVNEFINSQNEKIS---VLDLCCGS 136
Query: 207 GAIAIGIA 214
G I I IA
Sbjct: 137 GCIGISIA 144
>sp|Q2FWE1|PRMC_STAA8 Release factor glutamine methyltransferase OS=Staphylococcus aureus
(strain NCTC 8325) GN=prmC PE=3 SV=2
Length = 278
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 136 YGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLR 195
+ L QR+ +P QY+VG + V IPRPETE +++ L + D
Sbjct: 56 FDLALQRMLLGEPIQYIVGFASFYGRTFDVNSNCLIPRPETE---EVMLHFLQQLED--- 109
Query: 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
D VD+GTGSG +AI + + ++IA D++ A +A NA++
Sbjct: 110 DATIVDIGTGSGVLAITL-KCEKPDLNVIATDISLEAMNMARNNAEK 155
>sp|P40816|PRMC_SALTY Release factor glutamine methyltransferase OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=prmC PE=3 SV=2
Length = 277
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 142 RIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVD 201
R ++ +P YL G + L L V IPRP+TE +V+ L ++ +D
Sbjct: 61 RRKQGEPIAYLTGLREFWSLPLFVSPATLIPRPDTECLVEQALARL-----PVKTCRILD 115
Query: 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243
LGTG+GAIA+ +A + AVD P A A+A NA+ +
Sbjct: 116 LGTGTGAIALALA-CERPDCEVTAVDRMPDAVALAIRNAEHL 156
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,325,133
Number of Sequences: 539616
Number of extensions: 4195193
Number of successful extensions: 18428
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 289
Number of HSP's that attempted gapping in prelim test: 17859
Number of HSP's gapped (non-prelim): 579
length of query: 243
length of database: 191,569,459
effective HSP length: 114
effective length of query: 129
effective length of database: 130,053,235
effective search space: 16776867315
effective search space used: 16776867315
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)