Query 026108
Match_columns 243
No_of_seqs 349 out of 2544
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:52:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026108.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026108hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01544 bifunctional N5-gluta 100.0 6E-29 1.3E-33 240.7 14.0 162 65-243 4-185 (506)
2 COG2890 HemK Methylase of poly 100.0 1E-28 2.3E-33 223.1 12.9 156 65-243 2-157 (280)
3 KOG2904 Predicted methyltransf 100.0 8.1E-28 1.8E-32 214.3 14.1 171 54-243 23-195 (328)
4 PRK11805 N5-glutamine S-adenos 100.0 6.4E-28 1.4E-32 220.4 13.6 171 58-243 8-180 (307)
5 TIGR03533 L3_gln_methyl protei 99.9 2E-27 4.3E-32 214.9 13.1 165 64-243 2-168 (284)
6 TIGR00536 hemK_fam HemK family 99.9 2.3E-27 5.1E-32 213.8 13.3 160 65-243 2-161 (284)
7 PRK14966 unknown domain/N5-glu 99.9 1.7E-25 3.6E-30 211.3 13.2 137 95-243 162-298 (423)
8 TIGR03704 PrmC_rel_meth putati 99.9 5.9E-24 1.3E-28 189.1 13.1 121 96-243 13-133 (251)
9 PRK09328 N5-glutamine S-adenos 99.9 2.8E-22 6.2E-27 177.8 12.1 151 65-241 3-153 (275)
10 TIGR03534 RF_mod_PrmC protein- 99.8 2.4E-18 5.3E-23 150.1 10.0 133 99-242 1-133 (251)
11 PLN02672 methionine S-methyltr 99.7 1.6E-16 3.4E-21 164.5 11.4 87 153-243 79-165 (1082)
12 PF05175 MTS: Methyltransferas 99.4 1.1E-12 2.4E-17 109.8 8.5 74 161-243 2-78 (170)
13 COG2264 PrmA Ribosomal protein 99.3 6.4E-12 1.4E-16 114.6 10.6 102 131-243 94-208 (300)
14 PF06325 PrmA: Ribosomal prote 99.3 8.4E-12 1.8E-16 113.9 8.5 102 131-243 93-207 (295)
15 PRK13168 rumA 23S rRNA m(5)U19 99.3 2.2E-11 4.8E-16 116.4 11.7 91 145-242 241-341 (443)
16 PRK10909 rsmD 16S rRNA m(2)G96 99.2 6E-11 1.3E-15 102.6 10.6 92 145-243 8-99 (199)
17 PLN02336 phosphoethanolamine N 99.2 2.6E-11 5.6E-16 116.2 6.1 79 149-241 228-310 (475)
18 PRK11727 23S rRNA mA1618 methy 99.1 2.2E-10 4.8E-15 105.7 10.2 85 158-243 71-161 (321)
19 PF12847 Methyltransf_18: Meth 99.1 3.2E-10 6.8E-15 86.9 7.5 45 196-241 2-46 (112)
20 PRK14967 putative methyltransf 99.1 3.9E-10 8.4E-15 98.1 8.8 78 158-242 4-81 (223)
21 KOG2187 tRNA uracil-5-methyltr 99.1 1.1E-10 2.5E-15 112.2 5.6 91 146-243 332-428 (534)
22 PRK15001 SAM-dependent 23S rib 99.1 2.5E-10 5.5E-15 107.5 7.4 75 160-243 198-275 (378)
23 PRK03522 rumB 23S rRNA methylu 99.0 1.6E-09 3.4E-14 99.3 9.4 79 158-243 138-218 (315)
24 PRK00517 prmA ribosomal protei 99.0 2.3E-09 5E-14 95.1 10.0 105 131-243 52-165 (250)
25 TIGR00406 prmA ribosomal prote 99.0 2.9E-09 6.3E-14 96.5 10.8 102 131-243 91-205 (288)
26 TIGR00479 rumA 23S rRNA (uraci 99.0 1.8E-09 4E-14 102.7 9.8 91 146-243 241-337 (431)
27 COG2813 RsmC 16S RNA G1207 met 99.0 9.8E-10 2.1E-14 100.2 7.5 75 160-243 128-205 (300)
28 TIGR00537 hemK_rel_arch HemK-r 99.0 1.7E-09 3.8E-14 90.7 8.4 63 169-242 1-63 (179)
29 PLN02585 magnesium protoporphy 99.0 2E-09 4.4E-14 99.1 9.4 81 158-242 108-188 (315)
30 TIGR00095 RNA methyltransferas 99.0 3.2E-09 6.9E-14 90.9 9.6 86 151-243 10-95 (189)
31 TIGR00138 gidB 16S rRNA methyl 99.0 1.7E-09 3.8E-14 91.9 7.4 64 177-242 25-88 (181)
32 TIGR03587 Pse_Me-ase pseudamin 99.0 1.7E-09 3.6E-14 93.6 7.4 86 151-240 1-87 (204)
33 TIGR02085 meth_trns_rumB 23S r 98.9 3.2E-09 7E-14 99.7 9.4 79 158-243 198-278 (374)
34 PRK09489 rsmC 16S ribosomal RN 98.9 3.1E-09 6.7E-14 98.9 8.0 75 160-243 166-243 (342)
35 PF13847 Methyltransf_31: Meth 98.9 4.1E-09 8.8E-14 86.0 7.4 48 195-242 3-50 (152)
36 PRK08287 cobalt-precorrin-6Y C 98.9 7.1E-09 1.5E-13 87.6 9.1 61 177-242 17-77 (187)
37 PRK00107 gidB 16S rRNA methylt 98.9 6.9E-09 1.5E-13 88.9 8.8 47 196-243 46-92 (187)
38 COG2263 Predicted RNA methylas 98.9 7.6E-09 1.6E-13 88.8 8.9 49 192-242 42-90 (198)
39 COG4123 Predicted O-methyltran 98.8 7.3E-09 1.6E-13 92.4 7.6 74 161-243 18-91 (248)
40 PRK14968 putative methyltransf 98.8 1.1E-08 2.5E-13 85.0 8.3 66 166-242 2-67 (188)
41 COG2265 TrmA SAM-dependent met 98.8 1.7E-08 3.7E-13 96.7 10.4 77 160-243 260-338 (432)
42 TIGR02469 CbiT precorrin-6Y C5 98.8 2.2E-08 4.7E-13 77.5 8.8 46 196-242 20-65 (124)
43 PF05958 tRNA_U5-meth_tr: tRNA 98.8 5.7E-09 1.2E-13 97.4 6.0 76 160-243 164-241 (352)
44 PRK07402 precorrin-6B methylas 98.8 2.2E-08 4.8E-13 85.3 9.2 47 195-242 40-86 (196)
45 TIGR02143 trmA_only tRNA (urac 98.8 2.5E-08 5.3E-13 93.1 9.9 75 161-243 166-242 (353)
46 PRK05031 tRNA (uracil-5-)-meth 98.8 1.6E-08 3.4E-13 94.7 8.6 75 161-243 175-251 (362)
47 PRK13944 protein-L-isoaspartat 98.8 4.5E-08 9.9E-13 84.3 9.9 60 179-242 60-119 (205)
48 TIGR00080 pimt protein-L-isoas 98.8 3.6E-08 7.9E-13 85.3 9.3 60 179-242 65-124 (215)
49 PF03602 Cons_hypoth95: Conser 98.8 2.1E-08 4.6E-13 85.6 7.4 81 157-242 7-87 (183)
50 PRK00377 cbiT cobalt-precorrin 98.7 6.8E-08 1.5E-12 82.6 9.2 48 195-242 40-87 (198)
51 PF13659 Methyltransf_26: Meth 98.7 3.5E-08 7.7E-13 76.2 6.3 44 197-242 2-45 (117)
52 PRK13942 protein-L-isoaspartat 98.7 8.3E-08 1.8E-12 83.3 8.7 76 160-242 48-123 (212)
53 TIGR00740 methyltransferase, p 98.7 7.9E-08 1.7E-12 84.2 8.5 48 195-242 53-101 (239)
54 TIGR02752 MenG_heptapren 2-hep 98.6 1.4E-07 3E-12 81.7 9.1 48 195-242 45-92 (231)
55 KOG3191 Predicted N6-DNA-methy 98.6 1.2E-07 2.6E-12 81.1 8.1 76 167-243 16-91 (209)
56 PRK15451 tRNA cmo(5)U34 methyl 98.6 1E-07 2.3E-12 84.3 8.1 48 195-242 56-104 (247)
57 COG2242 CobL Precorrin-6B meth 98.6 1.8E-07 3.8E-12 80.2 9.0 49 194-243 33-81 (187)
58 COG0742 N6-adenine-specific me 98.6 2.8E-07 6.2E-12 79.1 10.0 86 151-242 3-88 (187)
59 PRK00121 trmB tRNA (guanine-N( 98.6 9.1E-08 2E-12 82.3 6.6 47 195-242 40-86 (202)
60 PLN02233 ubiquinone biosynthes 98.6 2.1E-07 4.5E-12 83.3 9.0 46 195-240 73-118 (261)
61 PF01209 Ubie_methyltran: ubiE 98.6 7.1E-08 1.5E-12 85.3 5.7 48 195-242 47-94 (233)
62 PRK12335 tellurite resistance 98.6 8.7E-08 1.9E-12 86.6 6.4 44 196-242 121-164 (287)
63 TIGR00477 tehB tellurite resis 98.6 1.6E-07 3.5E-12 80.3 7.6 44 196-242 31-74 (195)
64 TIGR00091 tRNA (guanine-N(7)-) 98.6 1.1E-07 2.5E-12 81.1 6.2 46 196-242 17-62 (194)
65 PLN02490 MPBQ/MSBQ methyltrans 98.6 2.1E-07 4.6E-12 86.7 8.5 69 169-241 90-158 (340)
66 PF13649 Methyltransf_25: Meth 98.5 1.4E-07 3.1E-12 71.7 5.7 43 199-241 1-45 (101)
67 PF05971 Methyltransf_10: Prot 98.5 2.2E-07 4.8E-12 85.0 7.6 83 159-243 63-149 (299)
68 COG2226 UbiE Methylase involve 98.5 1.7E-07 3.6E-12 83.4 6.6 47 195-242 51-97 (238)
69 TIGR02021 BchM-ChlM magnesium 98.5 3.4E-07 7.4E-12 79.0 8.3 61 176-241 38-98 (219)
70 PHA03411 putative methyltransf 98.5 3.9E-07 8.5E-12 82.6 9.0 44 196-240 65-108 (279)
71 PRK14103 trans-aconitate 2-met 98.5 2.5E-07 5.5E-12 81.8 7.6 44 195-239 29-72 (255)
72 PRK11207 tellurite resistance 98.5 2.1E-07 4.5E-12 79.7 6.7 45 195-242 30-74 (197)
73 PLN02781 Probable caffeoyl-CoA 98.5 4.7E-07 1E-11 79.9 8.7 48 196-243 69-116 (234)
74 COG2227 UbiG 2-polyprenyl-3-me 98.5 2E-07 4.3E-12 82.7 5.6 45 195-242 59-103 (243)
75 PRK01683 trans-aconitate 2-met 98.5 4.2E-07 9.2E-12 80.2 7.7 46 195-241 31-76 (258)
76 PRK07580 Mg-protoporphyrin IX 98.5 7.4E-07 1.6E-11 76.7 8.8 61 178-242 47-107 (230)
77 PRK14902 16S rRNA methyltransf 98.5 5.8E-07 1.2E-11 86.1 8.6 70 167-243 229-298 (444)
78 PRK08317 hypothetical protein; 98.4 9.5E-07 2.1E-11 75.4 8.9 62 174-239 2-63 (241)
79 PLN02244 tocopherol O-methyltr 98.4 8.5E-07 1.8E-11 82.3 8.8 62 179-242 101-163 (340)
80 PRK13943 protein-L-isoaspartat 98.4 9.4E-07 2E-11 81.8 9.0 48 195-242 80-127 (322)
81 TIGR03438 probable methyltrans 98.4 6.2E-07 1.3E-11 81.8 7.6 65 173-241 44-109 (301)
82 PHA03412 putative methyltransf 98.4 2.8E-07 6E-12 82.0 5.2 46 196-241 50-97 (241)
83 PRK06202 hypothetical protein; 98.4 4.3E-07 9.3E-12 79.2 6.0 47 195-241 60-109 (232)
84 PRK11873 arsM arsenite S-adeno 98.4 6.1E-07 1.3E-11 79.9 7.1 48 195-242 77-124 (272)
85 PRK11036 putative S-adenosyl-L 98.4 1.2E-06 2.6E-11 77.6 8.8 45 195-242 44-88 (255)
86 PF01135 PCMT: Protein-L-isoas 98.4 6.3E-07 1.4E-11 78.2 6.9 79 157-242 41-119 (209)
87 PRK00312 pcm protein-L-isoaspa 98.4 1.3E-06 2.8E-11 75.1 8.5 45 195-242 78-122 (212)
88 PF03848 TehB: Tellurite resis 98.4 8.1E-07 1.8E-11 76.6 7.0 45 195-242 30-74 (192)
89 smart00650 rADc Ribosomal RNA 98.4 8.2E-07 1.8E-11 73.9 6.7 44 195-241 13-56 (169)
90 TIGR03840 TMPT_Se_Te thiopurin 98.4 8.5E-07 1.8E-11 77.4 7.0 41 195-238 34-74 (213)
91 PLN02396 hexaprenyldihydroxybe 98.4 1.3E-06 2.8E-11 80.9 8.0 44 195-241 131-174 (322)
92 KOG1270 Methyltransferases [Co 98.3 5.2E-07 1.1E-11 81.1 4.9 42 196-240 90-131 (282)
93 PRK15128 23S rRNA m(5)C1962 me 98.3 8.7E-07 1.9E-11 84.1 6.6 47 195-243 220-266 (396)
94 PRK00274 ksgA 16S ribosomal RN 98.3 1.4E-06 3.1E-11 78.3 7.7 43 195-240 42-84 (272)
95 COG2230 Cfa Cyclopropane fatty 98.3 1.6E-06 3.6E-11 78.8 7.9 47 193-241 70-116 (283)
96 PRK11705 cyclopropane fatty ac 98.3 3.3E-06 7.1E-11 79.8 9.8 45 195-241 167-211 (383)
97 COG4106 Tam Trans-aconitate me 98.3 1.1E-06 2.4E-11 77.2 6.1 44 195-239 30-73 (257)
98 PRK05785 hypothetical protein; 98.3 1E-06 2.3E-11 77.2 6.0 42 196-239 52-93 (226)
99 PRK04266 fibrillarin; Provisio 98.3 1.5E-06 3.3E-11 76.6 6.9 46 195-241 72-117 (226)
100 smart00138 MeTrc Methyltransfe 98.3 2E-06 4.3E-11 77.2 7.6 64 177-240 81-152 (264)
101 PRK10258 biotin biosynthesis p 98.3 2.4E-06 5.1E-11 75.2 7.6 43 195-240 42-84 (251)
102 TIGR00446 nop2p NOL1/NOP2/sun 98.3 2.1E-06 4.6E-11 76.9 7.4 49 195-243 71-119 (264)
103 PF08241 Methyltransf_11: Meth 98.3 1.8E-06 3.8E-11 63.2 5.7 41 200-242 1-41 (95)
104 PRK14904 16S rRNA methyltransf 98.3 1.8E-06 3.9E-11 82.8 7.3 72 164-242 226-297 (445)
105 TIGR02072 BioC biotin biosynth 98.3 3.6E-06 7.7E-11 72.1 7.9 45 195-240 34-78 (240)
106 PRK11088 rrmA 23S rRNA methylt 98.2 3.2E-06 6.8E-11 75.8 7.8 44 196-240 86-132 (272)
107 PRK11783 rlmL 23S rRNA m(2)G24 98.2 1.6E-06 3.5E-11 87.7 6.5 47 195-243 538-584 (702)
108 PRK04148 hypothetical protein; 98.2 4E-06 8.6E-11 68.5 7.6 43 195-240 16-59 (134)
109 PF08704 GCD14: tRNA methyltra 98.2 5.6E-06 1.2E-10 74.0 8.9 51 193-243 38-88 (247)
110 PRK04338 N(2),N(2)-dimethylgua 98.2 4.2E-06 9.1E-11 79.1 8.6 46 197-243 59-104 (382)
111 PF08242 Methyltransf_12: Meth 98.2 7.1E-08 1.5E-12 72.8 -2.9 41 200-241 1-41 (99)
112 PRK14121 tRNA (guanine-N(7)-)- 98.2 3.8E-06 8.3E-11 79.6 8.0 46 196-242 123-168 (390)
113 TIGR02716 C20_methyl_CrtF C-20 98.2 4.9E-06 1.1E-10 75.6 8.3 46 195-242 149-194 (306)
114 TIGR01177 conserved hypothetic 98.2 5.3E-06 1.1E-10 76.5 8.5 62 174-242 165-226 (329)
115 PRK10901 16S rRNA methyltransf 98.2 3.4E-06 7.3E-11 80.6 7.4 48 195-243 244-291 (427)
116 PF01596 Methyltransf_3: O-met 98.2 6.9E-06 1.5E-10 71.4 8.8 62 174-242 31-92 (205)
117 PRK13255 thiopurine S-methyltr 98.2 3.5E-06 7.6E-11 73.8 6.9 40 195-237 37-76 (218)
118 PRK06922 hypothetical protein; 98.2 4.2E-06 9E-11 83.7 8.2 46 195-241 418-463 (677)
119 KOG3420 Predicted RNA methylas 98.2 2.2E-06 4.8E-11 71.2 5.1 49 192-242 45-93 (185)
120 PRK14903 16S rRNA methyltransf 98.2 4.3E-06 9.2E-11 80.2 7.5 48 195-242 237-284 (431)
121 PLN02476 O-methyltransferase 98.2 7E-06 1.5E-10 74.6 8.5 63 173-242 103-165 (278)
122 PTZ00098 phosphoethanolamine N 98.2 5.8E-06 1.3E-10 74.0 7.9 45 195-241 52-96 (263)
123 COG2519 GCD14 tRNA(1-methylade 98.2 3.2E-06 7E-11 75.6 6.0 49 194-242 93-141 (256)
124 PRK00216 ubiE ubiquinone/menaq 98.2 9.6E-06 2.1E-10 69.6 8.7 47 195-241 51-97 (239)
125 TIGR00563 rsmB ribosomal RNA s 98.2 6.4E-06 1.4E-10 78.6 8.2 48 195-243 238-285 (426)
126 PRK14896 ksgA 16S ribosomal RN 98.2 7.2E-06 1.6E-10 73.2 7.9 44 195-241 29-72 (258)
127 PF02475 Met_10: Met-10+ like- 98.1 6.7E-06 1.4E-10 71.4 7.2 75 160-243 72-148 (200)
128 PF02353 CMAS: Mycolic acid cy 98.1 1.5E-05 3.2E-10 72.2 9.7 48 193-242 60-107 (273)
129 PF10294 Methyltransf_16: Puta 98.1 7.1E-06 1.5E-10 69.1 7.1 68 174-243 22-91 (173)
130 KOG1271 Methyltransferases [Ge 98.1 5.5E-06 1.2E-10 71.2 6.1 64 177-242 49-113 (227)
131 PRK04457 spermidine synthase; 98.1 5.2E-06 1.1E-10 74.5 6.0 45 196-241 67-111 (262)
132 PTZ00338 dimethyladenosine tra 98.1 1.1E-05 2.3E-10 73.8 8.0 45 195-242 36-80 (294)
133 PRK14901 16S rRNA methyltransf 98.1 8.2E-06 1.8E-10 78.1 7.2 49 195-243 252-300 (434)
134 PF01170 UPF0020: Putative RNA 98.1 1.7E-05 3.7E-10 67.3 8.3 66 172-242 9-83 (179)
135 PRK15068 tRNA mo(5)U34 methylt 98.0 2.5E-05 5.4E-10 72.2 9.2 42 194-237 121-162 (322)
136 COG2518 Pcm Protein-L-isoaspar 98.0 2.4E-05 5.1E-10 68.4 8.3 75 158-242 42-116 (209)
137 TIGR00755 ksgA dimethyladenosi 98.0 2E-05 4.3E-10 70.0 7.9 44 195-241 29-72 (253)
138 TIGR00452 methyltransferase, p 98.0 2.2E-05 4.8E-10 72.5 8.4 42 194-237 120-161 (314)
139 COG4122 Predicted O-methyltran 98.0 3.5E-05 7.5E-10 67.8 8.4 62 174-242 45-106 (219)
140 PF10672 Methyltrans_SAM: S-ad 98.0 5.9E-05 1.3E-09 68.9 10.2 47 195-243 123-169 (286)
141 TIGR01983 UbiG ubiquinone bios 98.0 4E-05 8.6E-10 65.8 8.5 45 195-242 45-89 (224)
142 PLN03075 nicotianamine synthas 97.9 4.4E-05 9.6E-10 70.0 8.8 47 195-241 123-170 (296)
143 PRK00050 16S rRNA m(4)C1402 me 97.9 2.8E-05 6E-10 71.3 7.4 59 179-241 7-65 (296)
144 KOG1541 Predicted protein carb 97.9 1.5E-05 3.3E-10 70.4 5.2 41 195-238 50-90 (270)
145 TIGR01934 MenG_MenH_UbiE ubiqu 97.9 5E-05 1.1E-09 64.5 8.1 45 195-240 39-84 (223)
146 PF13489 Methyltransf_23: Meth 97.9 4.5E-05 9.7E-10 61.3 7.3 38 195-235 22-59 (161)
147 KOG1499 Protein arginine N-met 97.9 2.1E-05 4.6E-10 73.1 6.0 47 194-243 59-105 (346)
148 PRK05134 bifunctional 3-demeth 97.9 4.7E-05 1E-09 66.0 7.8 44 195-241 48-91 (233)
149 KOG1540 Ubiquinone biosynthesi 97.9 4.2E-05 9E-10 68.8 7.4 59 178-241 87-151 (296)
150 PF13679 Methyltransf_32: Meth 97.9 7.1E-05 1.5E-09 60.8 8.2 48 195-242 25-75 (141)
151 KOG2899 Predicted methyltransf 97.9 2.3E-05 5E-10 70.0 5.3 46 196-242 59-104 (288)
152 PTZ00146 fibrillarin; Provisio 97.8 8.4E-05 1.8E-09 68.1 8.2 68 167-237 107-178 (293)
153 TIGR02987 met_A_Alw26 type II 97.8 4.2E-05 9.1E-10 74.8 6.6 72 169-242 6-85 (524)
154 PRK11188 rrmJ 23S rRNA methylt 97.8 2.8E-05 6.1E-10 67.5 4.8 36 195-230 51-86 (209)
155 PLN02589 caffeoyl-CoA O-methyl 97.8 9.5E-05 2.1E-09 66.1 8.2 62 174-242 65-126 (247)
156 TIGR00308 TRM1 tRNA(guanine-26 97.8 0.00011 2.4E-09 69.5 8.7 46 197-243 46-92 (374)
157 COG2520 Predicted methyltransf 97.7 6.2E-05 1.4E-09 70.3 6.7 74 160-243 159-234 (341)
158 cd02440 AdoMet_MTases S-adenos 97.7 7.4E-05 1.6E-09 53.7 5.8 40 198-239 1-40 (107)
159 TIGR00438 rrmJ cell division p 97.7 4.2E-05 9.1E-10 64.6 4.8 38 195-232 32-69 (188)
160 PLN02336 phosphoethanolamine N 97.7 9.6E-05 2.1E-09 71.0 7.3 41 195-238 37-77 (475)
161 PRK00811 spermidine synthase; 97.7 0.00011 2.5E-09 66.5 7.2 46 195-241 76-121 (283)
162 PRK13256 thiopurine S-methyltr 97.7 0.0001 2.2E-09 65.2 6.5 41 195-238 43-83 (226)
163 COG4976 Predicted methyltransf 97.7 3.7E-05 7.9E-10 68.4 3.4 41 196-239 126-166 (287)
164 COG1092 Predicted SAM-dependen 97.6 0.00015 3.3E-09 68.9 7.5 47 195-243 217-263 (393)
165 PF02390 Methyltransf_4: Putat 97.6 0.00018 3.8E-09 62.0 6.7 44 198-242 20-63 (195)
166 PF05401 NodS: Nodulation prot 97.6 9.6E-05 2.1E-09 64.1 4.6 44 196-242 44-87 (201)
167 TIGR00478 tly hemolysin TlyA f 97.5 0.00016 3.5E-09 63.9 5.9 43 195-239 75-118 (228)
168 COG3129 Predicted SAM-dependen 97.5 0.00021 4.6E-09 63.6 5.8 80 163-243 43-125 (292)
169 PLN02366 spermidine synthase 97.5 0.00088 1.9E-08 61.8 9.9 46 195-241 91-136 (308)
170 TIGR00417 speE spermidine synt 97.5 0.00044 9.4E-09 62.1 7.7 45 196-241 73-117 (270)
171 KOG3010 Methyltransferase [Gen 97.4 9.8E-05 2.1E-09 65.9 3.3 38 198-238 36-73 (261)
172 COG3897 Predicted methyltransf 97.4 0.0001 2.2E-09 64.0 3.0 50 192-243 76-125 (218)
173 PF02384 N6_Mtase: N-6 DNA Met 97.4 0.00056 1.2E-08 62.0 7.3 64 170-241 29-98 (311)
174 PRK11783 rlmL 23S rRNA m(2)G24 97.3 0.00071 1.5E-08 68.7 8.5 69 172-243 170-279 (702)
175 PF08003 Methyltransf_9: Prote 97.3 0.00054 1.2E-08 63.1 6.6 41 193-235 113-153 (315)
176 PRK03612 spermidine synthase; 97.3 0.00034 7.4E-09 68.7 5.7 44 195-239 297-340 (521)
177 PRK01581 speE spermidine synth 97.2 0.00079 1.7E-08 63.6 7.1 43 195-238 150-192 (374)
178 PF05724 TPMT: Thiopurine S-me 97.2 0.00046 1E-08 60.5 5.2 40 195-237 37-76 (218)
179 COG1041 Predicted DNA modifica 97.2 0.00059 1.3E-08 63.8 5.5 46 195-243 197-242 (347)
180 PF08123 DOT1: Histone methyla 97.2 0.0012 2.7E-08 57.4 6.9 47 195-242 42-88 (205)
181 PF11599 AviRa: RRNA methyltra 97.1 0.0009 1.9E-08 59.0 5.6 47 196-242 52-99 (246)
182 KOG2730 Methylase [General fun 97.1 0.0012 2.5E-08 58.5 6.1 63 171-243 77-139 (263)
183 PF09243 Rsm22: Mitochondrial 96.9 0.0039 8.5E-08 56.4 8.4 61 180-240 18-78 (274)
184 PRK11933 yebU rRNA (cytosine-C 96.9 0.0029 6.3E-08 61.6 7.4 49 195-243 113-161 (470)
185 KOG1661 Protein-L-isoaspartate 96.8 0.003 6.5E-08 55.5 6.4 48 195-242 82-130 (237)
186 COG0220 Predicted S-adenosylme 96.8 0.0025 5.4E-08 56.4 5.8 45 197-242 50-94 (227)
187 PF05185 PRMT5: PRMT5 arginine 96.7 0.0042 9E-08 60.1 7.2 44 196-239 187-233 (448)
188 COG4076 Predicted RNA methylas 96.7 0.0018 3.9E-08 56.3 3.9 42 197-241 34-75 (252)
189 KOG1500 Protein arginine N-met 96.7 0.0035 7.6E-08 58.8 6.0 46 193-241 175-220 (517)
190 PF01555 N6_N4_Mtase: DNA meth 96.7 0.0076 1.6E-07 50.9 7.6 59 172-238 173-231 (231)
191 COG0030 KsgA Dimethyladenosine 96.6 0.0071 1.5E-07 54.6 7.5 42 196-240 31-72 (259)
192 KOG2361 Predicted methyltransf 96.6 0.0015 3.3E-08 58.4 3.1 87 150-241 30-118 (264)
193 KOG1663 O-methyltransferase [S 96.6 0.0096 2.1E-07 52.9 8.1 61 174-241 59-119 (237)
194 KOG2912 Predicted DNA methylas 96.6 0.0028 6E-08 58.9 4.8 82 160-243 65-149 (419)
195 PF00891 Methyltransf_2: O-met 96.6 0.003 6.5E-08 55.2 4.6 41 196-238 101-141 (241)
196 COG0116 Predicted N6-adenine-s 96.5 0.0082 1.8E-07 56.9 7.3 65 173-242 173-276 (381)
197 KOG2915 tRNA(1-methyladenosine 96.5 0.014 3E-07 53.3 8.4 90 147-242 46-152 (314)
198 PF00398 RrnaAD: Ribosomal RNA 96.4 0.013 2.7E-07 52.5 7.4 55 179-240 18-72 (262)
199 PF03291 Pox_MCEL: mRNA cappin 96.3 0.007 1.5E-07 56.4 5.7 44 195-240 62-105 (331)
200 PF02527 GidB: rRNA small subu 96.3 0.028 6E-07 48.2 8.9 63 175-238 27-90 (184)
201 TIGR00006 S-adenosyl-methyltra 96.2 0.019 4.2E-07 52.9 8.0 60 178-242 7-66 (305)
202 PRK01544 bifunctional N5-gluta 96.2 0.0095 2.1E-07 58.4 6.3 45 196-241 348-392 (506)
203 TIGR03439 methyl_EasF probable 96.2 0.017 3.7E-07 53.6 7.5 72 167-241 51-125 (319)
204 PRK10742 putative methyltransf 96.2 0.018 4E-07 51.7 7.3 42 198-242 91-132 (250)
205 PF07021 MetW: Methionine bios 96.1 0.0081 1.8E-07 52.0 4.6 22 195-216 13-34 (193)
206 PRK11524 putative methyltransf 96.1 0.028 6E-07 50.9 8.0 58 176-241 194-251 (284)
207 COG1352 CheR Methylase of chem 96.0 0.029 6.2E-07 50.9 7.6 61 177-238 79-147 (268)
208 PLN02823 spermine synthase 95.9 0.015 3.3E-07 54.3 6.0 45 195-240 103-147 (336)
209 COG0357 GidB Predicted S-adeno 95.9 0.024 5.2E-07 49.9 6.7 64 172-237 43-108 (215)
210 PF01739 CheR: CheR methyltran 95.9 0.016 3.6E-07 50.0 5.6 62 176-238 12-82 (196)
211 PRK13699 putative methylase; P 95.8 0.043 9.3E-07 48.3 8.0 62 172-241 145-206 (227)
212 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.7 0.042 9.1E-07 49.9 7.6 49 195-243 85-133 (283)
213 COG1867 TRM1 N2,N2-dimethylgua 95.6 0.019 4.1E-07 54.2 5.2 47 196-243 53-99 (380)
214 KOG0820 Ribosomal RNA adenine 95.6 0.046 1E-06 49.9 7.3 43 195-240 58-100 (315)
215 PF05219 DREV: DREV methyltran 95.5 0.038 8.3E-07 50.0 6.6 39 195-236 94-132 (265)
216 COG0500 SmtA SAM-dependent met 95.5 0.04 8.6E-07 40.4 5.7 40 199-240 52-92 (257)
217 COG2384 Predicted SAM-dependen 95.3 0.043 9.4E-07 48.5 6.2 46 197-243 18-63 (226)
218 KOG4058 Uncharacterized conser 95.3 0.039 8.5E-07 46.4 5.4 60 175-241 57-116 (199)
219 PHA01634 hypothetical protein 95.2 0.048 1E-06 44.7 5.5 46 195-242 28-73 (156)
220 PF01728 FtsJ: FtsJ-like methy 94.9 0.019 4.2E-07 47.9 2.7 36 196-231 24-59 (181)
221 PRK10611 chemotaxis methyltran 94.9 0.053 1.1E-06 49.6 5.7 44 196-239 116-166 (287)
222 PF02005 TRM: N2,N2-dimethylgu 94.5 0.075 1.6E-06 50.4 5.9 48 196-243 50-97 (377)
223 PF07757 AdoMet_MTase: Predict 94.4 0.062 1.3E-06 42.6 4.1 32 196-230 59-90 (112)
224 PF06080 DUF938: Protein of un 94.4 0.15 3.3E-06 44.5 7.0 42 198-240 28-69 (204)
225 COG2521 Predicted archaeal met 94.4 0.019 4E-07 51.5 1.3 42 195-239 134-176 (287)
226 KOG1501 Arginine N-methyltrans 94.2 0.073 1.6E-06 51.7 4.9 44 197-242 68-111 (636)
227 TIGR02081 metW methionine bios 94.2 0.051 1.1E-06 45.9 3.6 21 196-216 14-34 (194)
228 COG3963 Phospholipid N-methylt 94.1 0.2 4.3E-06 42.9 7.0 61 174-238 31-91 (194)
229 KOG3115 Methyltransferase-like 94.1 0.045 9.7E-07 48.2 3.0 45 197-242 62-106 (249)
230 KOG4300 Predicted methyltransf 93.9 0.086 1.9E-06 46.6 4.4 44 197-242 78-121 (252)
231 PF07091 FmrO: Ribosomal RNA m 93.9 0.11 2.5E-06 46.6 5.3 60 174-240 90-149 (251)
232 COG0144 Sun tRNA and rRNA cyto 93.9 0.18 3.8E-06 47.4 6.8 49 195-243 156-205 (355)
233 PF01795 Methyltransf_5: MraW 93.8 0.095 2.1E-06 48.6 4.8 58 179-241 8-65 (310)
234 PF12147 Methyltransf_20: Puta 93.8 0.35 7.7E-06 44.6 8.4 47 195-242 135-183 (311)
235 PRK00536 speE spermidine synth 93.2 0.43 9.2E-06 43.2 7.9 87 147-239 26-113 (262)
236 COG0286 HsdM Type I restrictio 92.9 0.18 3.9E-06 49.3 5.4 66 169-242 168-236 (489)
237 PRK11760 putative 23S rRNA C24 92.4 0.17 3.6E-06 47.7 4.3 35 194-231 210-244 (357)
238 PF01564 Spermine_synth: Sperm 91.9 0.26 5.7E-06 43.8 4.8 45 195-240 76-120 (246)
239 KOG1227 Putative methyltransfe 91.9 0.099 2.1E-06 48.4 2.1 46 196-243 195-241 (351)
240 KOG2651 rRNA adenine N-6-methy 91.4 0.62 1.3E-05 44.6 6.8 40 197-238 155-194 (476)
241 KOG2793 Putative N2,N2-dimethy 91.1 0.34 7.3E-06 43.6 4.6 41 196-239 87-127 (248)
242 PF03059 NAS: Nicotianamine sy 91.0 0.97 2.1E-05 41.3 7.6 67 174-241 100-167 (276)
243 PF02636 Methyltransf_28: Puta 91.0 0.43 9.4E-06 42.2 5.2 46 196-241 19-71 (252)
244 KOG4589 Cell division protein 91.0 0.35 7.5E-06 42.2 4.3 35 195-229 69-103 (232)
245 PF01269 Fibrillarin: Fibrilla 90.6 1.4 2.9E-05 39.3 7.9 68 168-238 49-120 (229)
246 COG0421 SpeE Spermidine syntha 90.6 0.96 2.1E-05 41.4 7.2 43 197-240 78-120 (282)
247 COG0293 FtsJ 23S rRNA methylas 90.5 0.37 8.1E-06 42.1 4.2 37 195-231 45-81 (205)
248 COG0275 Predicted S-adenosylme 89.9 1.5 3.2E-05 40.7 7.8 60 179-242 11-70 (314)
249 KOG2920 Predicted methyltransf 89.4 0.45 9.8E-06 43.5 4.0 37 195-233 116-152 (282)
250 KOG2078 tRNA modification enzy 87.8 0.29 6.3E-06 47.3 1.7 45 196-243 250-294 (495)
251 PRK10458 DNA cytosine methylas 87.1 2.9 6.2E-05 40.9 8.2 43 196-240 88-130 (467)
252 PF05148 Methyltransf_8: Hypot 87.1 1.1 2.3E-05 39.6 4.7 32 180-214 60-91 (219)
253 KOG1975 mRNA cap methyltransfe 86.7 0.8 1.7E-05 43.0 3.9 43 197-241 119-161 (389)
254 COG1565 Uncharacterized conser 86.4 4.1 9E-05 38.7 8.5 66 176-242 59-131 (370)
255 KOG3987 Uncharacterized conser 86.2 0.16 3.5E-06 45.0 -0.9 40 196-238 113-152 (288)
256 PF02086 MethyltransfD12: D12 85.8 1.1 2.3E-05 39.1 4.2 52 179-237 8-59 (260)
257 KOG0024 Sorbitol dehydrogenase 85.7 1.6 3.4E-05 41.0 5.3 44 194-238 168-212 (354)
258 PF04672 Methyltransf_19: S-ad 85.6 0.99 2.1E-05 41.0 3.9 41 198-239 71-114 (267)
259 PF05891 Methyltransf_PK: AdoM 85.4 0.89 1.9E-05 40.2 3.4 43 196-240 56-98 (218)
260 COG1189 Predicted rRNA methyla 83.1 1.8 4E-05 38.8 4.4 61 167-234 56-116 (245)
261 COG1064 AdhP Zn-dependent alco 82.7 1.6 3.5E-05 41.0 4.1 43 195-239 166-209 (339)
262 PF13578 Methyltransf_24: Meth 82.4 0.64 1.4E-05 35.1 1.1 32 200-231 1-34 (106)
263 KOG2940 Predicted methyltransf 82.4 2.4 5.3E-05 38.3 4.8 40 197-238 74-113 (325)
264 KOG1122 tRNA and rRNA cytosine 81.1 2.9 6.3E-05 40.5 5.2 51 193-243 239-289 (460)
265 PF11899 DUF3419: Protein of u 80.6 4.3 9.4E-05 38.7 6.2 41 195-238 35-75 (380)
266 KOG3201 Uncharacterized conser 80.0 1.1 2.4E-05 38.3 1.8 62 174-240 12-74 (201)
267 cd08283 FDH_like_1 Glutathione 78.4 4.8 0.0001 37.5 5.7 44 195-239 184-228 (386)
268 PF03141 Methyltransf_29: Puta 76.7 4.5 9.8E-05 39.9 5.1 48 168-216 91-138 (506)
269 COG4262 Predicted spermidine s 75.9 6.8 0.00015 37.7 5.9 85 148-240 244-333 (508)
270 PF02254 TrkA_N: TrkA-N domain 75.5 4.3 9.3E-05 30.8 3.9 35 204-238 4-39 (116)
271 COG0863 DNA modification methy 74.8 15 0.00034 32.4 7.8 45 195-242 222-266 (302)
272 PF04989 CmcI: Cephalosporin h 73.3 12 0.00026 32.8 6.4 37 195-231 32-71 (206)
273 KOG3924 Putative protein methy 73.2 3.8 8.3E-05 39.3 3.6 63 177-241 175-237 (419)
274 PRK09424 pntA NAD(P) transhydr 72.9 7.5 0.00016 38.5 5.6 43 194-238 163-206 (509)
275 COG1063 Tdh Threonine dehydrog 72.7 8.1 0.00018 35.9 5.6 42 196-238 169-211 (350)
276 KOG2352 Predicted spermine/spe 72.2 2.1 4.5E-05 42.0 1.6 44 196-240 296-339 (482)
277 KOG1098 Putative SAM-dependent 69.7 4.8 0.0001 40.9 3.5 35 196-230 45-79 (780)
278 PF07942 N2227: N2227-like pro 68.3 20 0.00042 32.7 6.9 40 195-237 56-95 (270)
279 TIGR00497 hsdM type I restrict 67.4 12 0.00026 36.7 5.7 68 168-241 196-266 (501)
280 KOG1253 tRNA methyltransferase 66.6 2.9 6.2E-05 41.2 1.3 49 195-243 109-157 (525)
281 PLN02668 indole-3-acetate carb 66.3 4.3 9.3E-05 38.8 2.3 20 196-215 64-83 (386)
282 PF01234 NNMT_PNMT_TEMT: NNMT/ 65.2 6.9 0.00015 35.3 3.4 44 193-238 54-97 (256)
283 cd05188 MDR Medium chain reduc 64.1 18 0.00039 30.5 5.6 42 195-238 134-176 (271)
284 KOG2671 Putative RNA methylase 60.1 3.6 7.9E-05 39.1 0.6 37 195-234 208-244 (421)
285 PF03492 Methyltransf_7: SAM d 58.1 13 0.00029 34.5 4.1 21 195-215 16-36 (334)
286 COG1889 NOP1 Fibrillarin-like 57.7 20 0.00044 31.7 4.8 62 168-233 52-113 (231)
287 cd08254 hydroxyacyl_CoA_DH 6-h 56.4 27 0.00059 30.9 5.6 42 195-238 165-207 (338)
288 KOG2782 Putative SAM dependent 55.0 16 0.00034 32.9 3.7 58 178-240 30-87 (303)
289 COG4301 Uncharacterized conser 54.9 66 0.0014 29.6 7.7 68 167-238 54-124 (321)
290 TIGR03201 dearomat_had 6-hydro 54.4 29 0.00062 31.6 5.5 42 195-238 166-208 (349)
291 KOG3045 Predicted RNA methylas 53.8 13 0.00029 34.2 3.1 36 195-230 180-221 (325)
292 PF12242 Eno-Rase_NADH_b: NAD( 53.4 67 0.0014 24.0 6.2 34 196-229 39-73 (78)
293 PF01861 DUF43: Protein of unk 52.4 82 0.0018 28.4 7.9 49 192-242 41-89 (243)
294 COG5379 BtaA S-adenosylmethion 51.0 31 0.00067 32.4 5.1 42 196-240 64-105 (414)
295 cd08237 ribitol-5-phosphate_DH 50.1 36 0.00078 31.0 5.5 42 195-238 163-207 (341)
296 PF05206 TRM13: Methyltransfer 50.0 45 0.00098 30.1 6.0 34 196-229 19-56 (259)
297 PRK09880 L-idonate 5-dehydroge 49.9 40 0.00086 30.6 5.7 42 195-238 169-212 (343)
298 PRK11154 fadJ multifunctional 46.3 43 0.00094 34.4 5.9 44 197-242 310-355 (708)
299 cd01075 NAD_bind_Leu_Phe_Val_D 44.8 1.5E+02 0.0032 25.3 8.1 44 193-238 25-69 (200)
300 TIGR02818 adh_III_F_hyde S-(hy 43.3 54 0.0012 30.1 5.6 42 195-238 185-228 (368)
301 KOG1709 Guanidinoacetate methy 43.2 71 0.0015 28.8 5.9 44 195-240 101-144 (271)
302 TIGR02822 adh_fam_2 zinc-bindi 42.7 60 0.0013 29.4 5.7 42 195-238 165-207 (329)
303 cd08230 glucose_DH Glucose deh 42.5 57 0.0012 29.6 5.6 42 195-238 172-217 (355)
304 cd08232 idonate-5-DH L-idonate 42.1 57 0.0012 29.1 5.4 41 195-237 165-207 (339)
305 KOG3178 Hydroxyindole-O-methyl 42.0 30 0.00066 32.6 3.6 41 197-240 179-219 (342)
306 PF04445 SAM_MT: Putative SAM- 41.7 68 0.0015 28.6 5.7 38 197-237 77-114 (234)
307 KOG1331 Predicted methyltransf 40.4 20 0.00042 33.1 2.1 38 196-238 46-83 (293)
308 TIGR03451 mycoS_dep_FDH mycoth 39.9 59 0.0013 29.6 5.2 42 195-238 176-219 (358)
309 KOG1201 Hydroxysteroid 17-beta 39.5 1.1E+02 0.0024 28.4 6.8 47 193-242 35-84 (300)
310 PRK09496 trkA potassium transp 39.4 46 0.001 31.4 4.6 42 196-239 231-273 (453)
311 TIGR02440 FadJ fatty oxidation 38.8 50 0.0011 33.9 5.0 42 198-241 306-349 (699)
312 cd08255 2-desacetyl-2-hydroxye 38.3 66 0.0014 27.7 5.1 42 195-238 97-140 (277)
313 COG1062 AdhC Zn-dependent alco 37.3 93 0.002 29.6 6.0 43 195-238 185-228 (366)
314 KOG1596 Fibrillarin and relate 37.1 31 0.00067 31.5 2.8 44 195-238 156-203 (317)
315 cd00401 AdoHcyase S-adenosyl-L 35.5 1.3E+02 0.0029 29.0 7.0 43 194-238 200-243 (413)
316 PF03514 GRAS: GRAS domain fam 34.4 1.2E+02 0.0026 28.6 6.5 48 195-242 110-167 (374)
317 TIGR03366 HpnZ_proposed putati 34.0 84 0.0018 27.6 5.1 42 195-238 120-163 (280)
318 TIGR00561 pntA NAD(P) transhyd 33.9 89 0.0019 31.1 5.6 42 195-238 163-205 (511)
319 PLN02740 Alcohol dehydrogenase 33.1 84 0.0018 29.0 5.1 42 195-238 198-241 (381)
320 COG5459 Predicted rRNA methyla 32.8 50 0.0011 31.8 3.5 52 180-232 98-150 (484)
321 TIGR00518 alaDH alanine dehydr 32.4 1.2E+02 0.0026 28.6 6.1 42 195-238 166-208 (370)
322 cd08281 liver_ADH_like1 Zinc-d 31.6 1E+02 0.0023 28.2 5.5 42 195-238 191-234 (371)
323 cd08245 CAD Cinnamyl alcohol d 31.1 1.2E+02 0.0026 26.8 5.6 41 195-237 162-203 (330)
324 PRK10669 putative cation:proto 31.0 66 0.0014 31.8 4.3 35 204-238 423-458 (558)
325 cd05278 FDH_like Formaldehyde 30.9 1.3E+02 0.0028 26.8 5.9 43 195-238 167-210 (347)
326 cd08261 Zn_ADH7 Alcohol dehydr 30.8 1.1E+02 0.0024 27.2 5.4 41 195-237 159-200 (337)
327 KOG1269 SAM-dependent methyltr 29.7 41 0.00089 31.9 2.5 41 196-238 111-151 (364)
328 cd08234 threonine_DH_like L-th 27.2 1.3E+02 0.0028 26.6 5.1 41 195-237 159-201 (334)
329 PF12692 Methyltransf_17: S-ad 27.2 1.5E+02 0.0032 25.0 5.0 32 197-229 30-61 (160)
330 PRK03659 glutathione-regulated 27.1 83 0.0018 31.6 4.2 35 204-238 406-441 (601)
331 TIGR00571 dam DNA adenine meth 27.1 83 0.0018 28.1 3.9 47 179-235 14-60 (266)
332 COG1743 Adenine-specific DNA m 26.3 75 0.0016 33.4 3.7 42 196-240 91-132 (875)
333 cd08238 sorbose_phosphate_red 26.2 1.3E+02 0.0028 28.2 5.2 45 195-239 175-222 (410)
334 smart00488 DEXDc2 DEAD-like he 26.2 72 0.0016 28.9 3.3 33 172-209 9-41 (289)
335 smart00489 DEXDc3 DEAD-like he 26.2 72 0.0016 28.9 3.3 33 172-209 9-41 (289)
336 TIGR01202 bchC 2-desacetyl-2-h 26.0 1.3E+02 0.0029 26.8 5.1 42 195-238 144-187 (308)
337 PRK03562 glutathione-regulated 25.7 78 0.0017 32.0 3.8 39 198-238 402-441 (621)
338 PF07101 DUF1363: Protein of u 25.6 27 0.00058 27.3 0.4 15 199-213 6-20 (124)
339 COG3392 Adenine-specific DNA m 25.1 48 0.001 30.6 1.9 31 195-228 27-57 (330)
340 PF03686 UPF0146: Uncharacteri 25.0 2.4E+02 0.0052 22.9 5.8 33 196-231 14-47 (127)
341 cd08239 THR_DH_like L-threonin 24.9 1.5E+02 0.0031 26.5 5.1 42 195-238 163-206 (339)
342 cd08294 leukotriene_B4_DH_like 24.7 1.6E+02 0.0035 25.9 5.3 42 195-238 143-186 (329)
343 PLN03154 putative allyl alcoho 24.5 1.5E+02 0.0034 27.0 5.3 41 195-237 158-200 (348)
344 cd01065 NAD_bind_Shikimate_DH 24.5 2.4E+02 0.0052 22.0 5.8 41 195-237 18-60 (155)
345 PLN02253 xanthoxin dehydrogena 24.2 2.3E+02 0.0051 24.4 6.2 39 196-235 18-57 (280)
346 TIGR02825 B4_12hDH leukotriene 24.0 1.9E+02 0.0041 25.7 5.6 42 195-238 138-181 (325)
347 cd08301 alcohol_DH_plants Plan 23.5 1.7E+02 0.0038 26.6 5.4 40 195-238 187-230 (369)
348 PLN02780 ketoreductase/ oxidor 23.4 2.1E+02 0.0045 26.0 5.9 44 196-240 53-97 (320)
349 KOG0022 Alcohol dehydrogenase, 23.3 2.1E+02 0.0045 27.2 5.8 89 144-238 133-235 (375)
350 COG4877 Uncharacterized protei 23.0 60 0.0013 22.9 1.6 40 47-109 6-45 (63)
351 PF11968 DUF3321: Putative met 22.8 64 0.0014 28.6 2.2 31 196-230 52-82 (219)
352 KOG2798 Putative trehalase [Ca 22.6 1.1E+02 0.0024 28.9 3.8 35 196-233 151-185 (369)
353 cd05285 sorbitol_DH Sorbitol d 22.5 1.8E+02 0.0038 26.1 5.2 41 195-237 162-204 (343)
354 PF01262 AlaDh_PNT_C: Alanine 22.2 2.1E+02 0.0046 23.3 5.2 43 195-239 19-62 (168)
355 PRK06196 oxidoreductase; Provi 22.1 2.9E+02 0.0064 24.5 6.5 42 195-237 25-67 (315)
356 cd08535 SAM_PNT-Tel_Yan Steril 21.9 92 0.002 22.4 2.5 23 63-85 8-30 (68)
357 cd08300 alcohol_DH_class_III c 21.8 2.1E+02 0.0046 26.1 5.6 42 195-238 186-229 (368)
358 COG4798 Predicted methyltransf 21.6 1.1E+02 0.0023 27.3 3.3 33 195-227 48-80 (238)
359 PLN02827 Alcohol dehydrogenase 21.5 2.1E+02 0.0045 26.5 5.5 42 195-238 193-236 (378)
360 PRK05579 bifunctional phosphop 21.4 2.9E+02 0.0063 26.5 6.6 55 174-230 168-238 (399)
361 cd08278 benzyl_alcohol_DH Benz 21.2 2.4E+02 0.0051 25.8 5.8 42 195-238 186-229 (365)
362 cd08277 liver_alcohol_DH_like 21.2 2.2E+02 0.0047 26.0 5.6 42 195-238 184-227 (365)
363 TIGR02437 FadB fatty oxidation 20.7 2.1E+02 0.0047 29.5 5.9 42 198-242 315-358 (714)
364 PF07279 DUF1442: Protein of u 20.5 4.6E+02 0.01 23.3 7.1 44 196-240 42-89 (218)
365 PF09791 Oxidored-like: Oxidor 20.5 34 0.00074 23.1 0.0 10 201-210 16-25 (48)
366 PF08392 FAE1_CUT1_RppA: FAE1/ 20.4 1.5E+02 0.0033 27.3 4.2 61 165-229 110-175 (290)
367 PRK11730 fadB multifunctional 20.2 2.2E+02 0.0049 29.3 5.9 42 197-241 314-357 (715)
No 1
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.96 E-value=6e-29 Score=240.73 Aligned_cols=162 Identities=25% Similarity=0.294 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHhhhcCCccccCCCCCCCcccHHHHHHHHHhccCCCCCCcccccCCCccccccchhHHHHHHHHHhhhc
Q 026108 65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE 144 (243)
Q Consensus 65 ~l~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~R~~ 144 (243)
++.++++|+...+.++|+.. +..||+||+++++++++..+.+ + .+..++.+..+.++.+.+||.
T Consensus 4 ~~~~~l~~~~~~l~~~g~~~-----------~~~~a~~Ll~~~l~~~~~~l~~--~---~~~~l~~~~~~~~~~~~~rr~ 67 (506)
T PRK01544 4 SIKQILSDATDKLNKIGISS-----------PQLEARILLQHVINKPIEYLLI--N---LDEQLNEAEIEAFEKLLERRL 67 (506)
T ss_pred cHHHHHHHHHHHHHHcCCCC-----------HHHHHHHHHHHHHCcCHHHHhh--c---cCCCCCHHHHHHHHHHHHHHH
Confidence 47788999999998777632 3569999999999998876542 1 123456666667777888999
Q ss_pred CCCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhc------------------C--CCCCCCcEEEecc
Q 026108 145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRD------------------N--DGLRDGFWVDLGT 204 (243)
Q Consensus 145 ~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~------------------~--~~~~~~rVLDLGt 204 (243)
+|+|+|||+|+++|+|++|.|+++|||||||||.|++.+++.+... . ...++.+|||+||
T Consensus 68 ~~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~ 147 (506)
T PRK01544 68 KHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGT 147 (506)
T ss_pred cCCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccC
Confidence 9999999999999999999999999999999999999998765210 0 0112357999999
Q ss_pred CCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 205 GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 205 GSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
|||++++.+++.+ ++++|+|+|+|+.|+++|++|++.+
T Consensus 148 GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~ 185 (506)
T PRK01544 148 GSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKY 185 (506)
T ss_pred chhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHc
Confidence 9999999999986 7899999999999999999998753
No 2
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1e-28 Score=223.09 Aligned_cols=156 Identities=31% Similarity=0.364 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHhhhcCCccccCCCCCCCcccHHHHHHHHHhccCCCCCCcccccCCCccccccchhHHHHHHHHHhhhc
Q 026108 65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE 144 (243)
Q Consensus 65 ~l~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~R~~ 144 (243)
++.+|++|+.+++.++| .. +..+++.++.+.++.++..+.. + .+..+..+..+.+..+..|+.
T Consensus 2 ~~~~~l~~a~~~l~~~~-~~-----------~~~~~~~l~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~rr~ 64 (280)
T COG2890 2 TIRQALREAVSRLSAAG-GT-----------PNLDAELLLLHLLGKPRDQLLA--H---PEAELSEEELERLRELLERRA 64 (280)
T ss_pred cHHHHHHHHHHHHHhcC-CC-----------CcccHHHHHHHHhCCCHHHHhh--c---cccccCHHHHHHHHHHHHHHH
Confidence 68999999999999888 11 1336888999999987765431 1 222345444444445555559
Q ss_pred CCCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEE
Q 026108 145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (243)
Q Consensus 145 ~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~ 224 (243)
+|+|++||+|..+|++++|.|+++|+||||+||+|++.++..+ ... .. +|||||||||||++++|+++ ++++|+
T Consensus 65 ~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~-~~~---~~-~ilDlGTGSG~iai~la~~~-~~~~V~ 138 (280)
T COG2890 65 EGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALL-LQL---DK-RILDLGTGSGAIAIALAKEG-PDAEVI 138 (280)
T ss_pred CCCCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhh-hhc---CC-cEEEecCChHHHHHHHHhhC-cCCeEE
Confidence 9999999999999999999999999999999999999987433 111 11 69999999999999999996 889999
Q ss_pred EEeCCHHHHHHHHHHHHhC
Q 026108 225 AVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 225 avDiS~~AL~~Ar~Na~~~ 243 (243)
|+|||++|+++|++|+++|
T Consensus 139 a~Dis~~Al~~A~~Na~~~ 157 (280)
T COG2890 139 AVDISPDALALARENAERN 157 (280)
T ss_pred EEECCHHHHHHHHHHHHHc
Confidence 9999999999999999875
No 3
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.95 E-value=8.1e-28 Score=214.33 Aligned_cols=171 Identities=30% Similarity=0.483 Sum_probs=137.5
Q ss_pred cCC-ccccCChHHHHHHHHHHHHHhhhcCCccccCCCCCCCcccHHHHHHHHHhccCCCCCCcccccCCCccccc-cchh
Q 026108 54 LKP-PKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVR-LRIG 131 (243)
Q Consensus 54 ~r~-~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~-l~~~ 131 (243)
.+| |.|+.....|.-|..|+. .++++|+.- .+.+-.||+.|+++..-... .+...+.+ ....
T Consensus 23 ~~P~p~hat~~sal~~~~~W~~-~l~~~~~e~-----------~k~~~~~i~shvL~~Kf~si----~ds~~~~pl~~~q 86 (328)
T KOG2904|consen 23 IRPTPSHATSLSALELLLPWTR-TLEQAGEES-----------SKLSYKWIVSHVLPDKFWSI----EDSIVDDPLVILQ 86 (328)
T ss_pred CCCCCccCccchhhHhhchHHH-HHHHhcCch-----------hhhhhHHHHHhhhhhhhccc----cchhhccccchhH
Confidence 344 778888899999999986 566666541 24467899999998762111 11222223 3446
Q ss_pred HHHHHHHHHhhhcCCCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHH
Q 026108 132 LDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAI 211 (243)
Q Consensus 132 ~~~~~~~~~~R~~~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai 211 (243)
++.+.++|.+|.. |+|+|||+|.++|.++.+.+.|+|||||||||.+++.+++.+ ......++..|||+|||||||++
T Consensus 87 l~~i~~~~~~R~~-r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~-~~~~~~~~~~ildlgtGSGaIsl 164 (328)
T KOG2904|consen 87 LESIRWACLQRYK-RMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDAL-NNSEHSKHTHILDLGTGSGAISL 164 (328)
T ss_pred HHHHHHHHHHHHh-cCChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHH-hhhhhcccceEEEecCCccHHHH
Confidence 7888888887775 999999999999999999999999999999999999999987 33334445679999999999999
Q ss_pred HHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 212 GIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 212 ~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
.+++.+ ++..|+|||.|+.|+.+|.+|++++
T Consensus 165 sll~~L-~~~~v~AiD~S~~Ai~La~eN~qr~ 195 (328)
T KOG2904|consen 165 SLLHGL-PQCTVTAIDVSKAAIKLAKENAQRL 195 (328)
T ss_pred HHHhcC-CCceEEEEeccHHHHHHHHHHHHHH
Confidence 999998 7899999999999999999999874
No 4
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.95 E-value=6.4e-28 Score=220.41 Aligned_cols=171 Identities=27% Similarity=0.289 Sum_probs=138.1
Q ss_pred cccCChHHHHHHHHHHHHHhhhcCCccccCCCCCCCcccHHHHHHHHHhccCCCCCCcccccCCCccccccchhHHHHHH
Q 026108 58 KYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYG 137 (243)
Q Consensus 58 ~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 137 (243)
+++..++++.++++|+...+.++|+.+++.. .+ +..|+++|+++++++++..+.+ . .+..++.+..+.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~---~~~~a~~ll~~~l~~~~~~l~~--~---~~~~l~~~~~~~~~ 77 (307)
T PRK11805 8 EAVNELHTIRDLLRWAVSRFNAAGLFFGHGT--DN---AWDEAVQLVLHALHLPLDIPEP--F---LDARLTPSEKARIL 77 (307)
T ss_pred cchhhhhHHHHHHHHHHHHHHhcCCccCCCC--CC---HHHHHHHHHHHHHCcCHHHHhh--c---ccCCCCHHHHHHHH
Confidence 5677899999999999999988887655421 11 3569999999999998866532 1 12245555556666
Q ss_pred HHHhhhc-CCCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHH-HhhhcCCCCCCCcEEEeccCCcHHHHHHHH
Q 026108 138 LWKQRIE-KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSD-VLVRDNDGLRDGFWVDLGTGSGAIAIGIAR 215 (243)
Q Consensus 138 ~~~~R~~-~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~-~l~~~~~~~~~~rVLDLGtGSG~iai~LA~ 215 (243)
.+.+||. +|+|+|||+|+++|+|++|.|+++||||||+||.+++.++. ++ ... ...+|||+|||+|++++.+++
T Consensus 78 ~~~~rr~~~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~-~~~---~~~~VLDlG~GsG~iai~la~ 153 (307)
T PRK11805 78 ELIERRINERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWL-EDP---PVTRILDLCTGSGCIAIACAY 153 (307)
T ss_pred HHHHHHHHCCccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHh-ccC---CCCEEEEEechhhHHHHHHHH
Confidence 7777876 79999999999999999999999999999999999887765 44 211 125799999999999999999
Q ss_pred HhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 216 VLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 216 ~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
.+ ++++|+|+|+|+.|+++|++|++++
T Consensus 154 ~~-p~~~V~avDis~~al~~A~~n~~~~ 180 (307)
T PRK11805 154 AF-PDAEVDAVDISPDALAVAEINIERH 180 (307)
T ss_pred HC-CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 85 7899999999999999999998753
No 5
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.95 E-value=2e-27 Score=214.85 Aligned_cols=165 Identities=28% Similarity=0.310 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHhhhcCCccccCCCCCCCcccHHHHHHHHHhccCCCCCCcccccCCCccccccchhHHHHHHHHHhhh
Q 026108 64 SDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRI 143 (243)
Q Consensus 64 ~~l~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~R~ 143 (243)
+++.++++|+...+.++++.+.+. .++ +..|++||+++++++++..+.+ + .+..++.+..+.+..+.+||
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~---~~~--~~~~a~~ll~~~l~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~rr 71 (284)
T TIGR03533 2 HTIRDFLRWAVSRFNAAGLFFGHG---TDN--AWDEAVYLVLHALHLPLDILEP--F---LDARLTPSEKERILELIERR 71 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCcccCC---CCC--HHHHHHHHHHHHHCcCHHHHhh--c---ccCCCCHHHHHHHHHHHHHH
Confidence 568889999999998877654321 111 3569999999999998876542 1 12245555555666666777
Q ss_pred c-CCCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHH-HhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCc
Q 026108 144 E-KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSD-VLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKG 221 (243)
Q Consensus 144 ~-~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~-~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a 221 (243)
. +++|+|||+|+++|+|++|.|+++||||||+||.+++.++. ++ .. .++.+|||+|||+|++++.+++.. +++
T Consensus 72 ~~~~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~-~~---~~~~~vLDlG~GsG~i~~~la~~~-~~~ 146 (284)
T TIGR03533 72 IEERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWL-EP---EPVKRILDLCTGSGCIAIACAYAF-PEA 146 (284)
T ss_pred HhCCCcHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHh-cc---CCCCEEEEEeCchhHHHHHHHHHC-CCC
Confidence 5 79999999999999999999999999999999999988765 44 11 123579999999999999999985 788
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC
Q 026108 222 SIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 222 ~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
+|+|+|+|+.|++.|++|++++
T Consensus 147 ~v~avDis~~al~~A~~n~~~~ 168 (284)
T TIGR03533 147 EVDAVDISPDALAVAEINIERH 168 (284)
T ss_pred EEEEEECCHHHHHHHHHHHHHc
Confidence 9999999999999999999753
No 6
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.95 E-value=2.3e-27 Score=213.81 Aligned_cols=160 Identities=30% Similarity=0.339 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHhhhcCCccccCCCCCCCcccHHHHHHHHHhccCCCCCCcccccCCCccccccchhHHHHHHHHHhhhc
Q 026108 65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE 144 (243)
Q Consensus 65 ~l~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~R~~ 144 (243)
++.++++|+...+.++|+. .+ +..|+++|++|++++++..+.. + .+..++.+..+.+..+.+||.
T Consensus 2 ~~~~~~~~~~~~l~~~~~~-------~~---~~~~a~~ll~~~l~~~~~~~~~--~---~~~~l~~~~~~~~~~~~~~r~ 66 (284)
T TIGR00536 2 TIQEALRWASSALSRAIAR-------EN---PWLEALLLLLHDLGRERDLLLA--F---LTEELTPDEKERIFRLVLRRV 66 (284)
T ss_pred cHHHHHHHHHHHHHHCCCC-------CC---HHHHHHHHHHHHHCcCHHHHhh--c---cCCCCCHHHHHHHHHHHHHHH
Confidence 4678899999999877652 01 3569999999999998876532 1 223456666667777788899
Q ss_pred CCCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEE
Q 026108 145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (243)
Q Consensus 145 ~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~ 224 (243)
+++|+|||+|.++|+|++|.|+++||||||+||.+++.++..+ .... ...+|||+|||||++++.++..+ ++.+|+
T Consensus 67 ~~~pl~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~-~~~~--~~~~vLDlG~GsG~i~l~la~~~-~~~~v~ 142 (284)
T TIGR00536 67 KGVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASL-ISQN--PILHILDLGTGSGCIALALAYEF-PNAEVI 142 (284)
T ss_pred cCCCHHHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHh-hhcC--CCCEEEEEeccHhHHHHHHHHHC-CCCEEE
Confidence 9999999999999999999999999999999999999988765 2111 12579999999999999999986 778999
Q ss_pred EEeCCHHHHHHHHHHHHhC
Q 026108 225 AVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 225 avDiS~~AL~~Ar~Na~~~ 243 (243)
|+|+|++|+++|++|++++
T Consensus 143 avDis~~al~~a~~n~~~~ 161 (284)
T TIGR00536 143 AVDISPDALAVAEENAEKN 161 (284)
T ss_pred EEECCHHHHHHHHHHHHHc
Confidence 9999999999999999753
No 7
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.93 E-value=1.7e-25 Score=211.31 Aligned_cols=137 Identities=28% Similarity=0.339 Sum_probs=117.2
Q ss_pred ccHHHHHHHHHhccCCCCCCcccccCCCccccccchhHHHHHHHHHhhhcCCCceeEEeeeccccccccccCCCcccCCc
Q 026108 95 ILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRP 174 (243)
Q Consensus 95 ~~~~Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp 174 (243)
-+..|+++|++|++++++..+.+ + .+..++.+..+.++.+.+||.+|+|+|||+|.++|+|++|.|++++|||||
T Consensus 162 ~p~~dA~~LL~~~l~~~r~~l~~--~---~~~~l~~~~~~~~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRp 236 (423)
T PRK14966 162 LPKNEARMLLQYASEYTRVQLLT--R---GGEEMPDEVRQRADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRP 236 (423)
T ss_pred ChHHHHHHHHHHHHCcCHHHHhh--C---CcccCCHHHHHHHHHHHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCc
Confidence 35679999999999998866532 1 122466666677788888999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 175 ~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
+||.+++.++..+ . ++.+|||+|||||++++.+++.. ++++|+|+|+|++|++.|++|++++
T Consensus 237 eTE~LVe~aL~~l-~-----~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~ 298 (423)
T PRK14966 237 ETEHLVEAVLARL-P-----ENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADL 298 (423)
T ss_pred cHHHHHHHhhhcc-C-----CCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc
Confidence 9999999988765 1 23579999999999999999875 7889999999999999999998753
No 8
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.91 E-value=5.9e-24 Score=189.10 Aligned_cols=121 Identities=27% Similarity=0.348 Sum_probs=103.8
Q ss_pred cHHHHHHHHHhccCCCCCCcccccCCCccccccchhHHHHHHHHHhhhcCCCceeEEeeeccccccccccCCCcccCCcc
Q 026108 96 LFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPE 175 (243)
Q Consensus 96 ~~~Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~ 175 (243)
++.||+||++|+.. ...++.+.+||.+|+|+|||+|.++|+|++|.+++++|+||++
T Consensus 13 ~~~~a~~l~~~~~~-----------------------~~~~~~~~~rr~~~~Pl~yi~g~~~f~g~~~~v~~~vf~pr~~ 69 (251)
T TIGR03704 13 AEDEAALLVDAART-----------------------PGELAAMVDRRVAGLPLEHVLGWAEFCGLRIAVDPGVFVPRRR 69 (251)
T ss_pred HHHHHHHHHHhccC-----------------------HHHHHHHHHHHHcCCCHHHhcccCeEcCeEEEECCCCcCCCcc
Confidence 57799999999731 2345666778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 176 TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
||.+++.++.++ ... ....+|||+|||+|++++.+++.+ ++.+|+|+|+|+.|++.|++|++.+
T Consensus 70 Te~Lv~~~l~~~-~~~--~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~ 133 (251)
T TIGR03704 70 TEFLVDEAAALA-RPR--SGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADA 133 (251)
T ss_pred HHHHHHHHHHhh-ccc--CCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc
Confidence 999999998876 211 123479999999999999999886 7789999999999999999998753
No 9
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.88 E-value=2.8e-22 Score=177.78 Aligned_cols=151 Identities=31% Similarity=0.333 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHhhhcCCccccCCCCCCCcccHHHHHHHHHhccCCCCCCcccccCCCccccccchhHHHHHHHHHhhhc
Q 026108 65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE 144 (243)
Q Consensus 65 ~l~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~R~~ 144 (243)
++.++++|+..++.. +..|+++|++++++.++..+.+ + .+..++.+..+.+..+.+|+.
T Consensus 3 ~~~~~~~~~~~~l~~----------------~~~~~~~ll~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~ 61 (275)
T PRK09328 3 TIAEALREATARLAS----------------PRLDAELLLAHVLGLSRTDLLL--N---PEEELTPEELERFRALVARRA 61 (275)
T ss_pred cHHHHHHHHHHHHhC----------------cHHHHHHHHHHHHCcCHHHHhh--c---ccCCCCHHHHHHHHHHHHHHH
Confidence 467889999888853 1348999999999998765532 1 112334433355555666778
Q ss_pred CCCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEE
Q 026108 145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (243)
Q Consensus 145 ~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~ 224 (243)
+++|++|++|..+|++..|.+++++++|||+||.+++.+.... . ..++.+|||+|||+|++++.++..+ ++.+|+
T Consensus 62 ~~~p~~~i~g~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~-~---~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~ 136 (275)
T PRK09328 62 AGEPLQYILGEAEFWGLDFKVSPGVLIPRPETEELVEWALEAL-L---LKEPLRVLDLGTGSGAIALALAKER-PDAEVT 136 (275)
T ss_pred cCCCHHHHceeceEcCcEEEECCCceeCCCCcHHHHHHHHHhc-c---ccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEE
Confidence 9999999999999999999999999999999999999988544 1 1235689999999999999999986 789999
Q ss_pred EEeCCHHHHHHHHHHHH
Q 026108 225 AVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 225 avDiS~~AL~~Ar~Na~ 241 (243)
|+|+|+.+++.|++|++
T Consensus 137 ~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 137 AVDISPEALAVARRNAK 153 (275)
T ss_pred EEECCHHHHHHHHHHHH
Confidence 99999999999999986
No 10
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.76 E-value=2.4e-18 Score=150.07 Aligned_cols=133 Identities=32% Similarity=0.421 Sum_probs=109.3
Q ss_pred HHHHHHHhccCCCCCCcccccCCCccccccchhHHHHHHHHHhhhcCCCceeEEeeeccccccccccCCCcccCCccHHH
Q 026108 99 ELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETEL 178 (243)
Q Consensus 99 Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TEl 178 (243)
|+++|+++++++....... . .+..+..+..+.+....+|+..++|++|++|..+|++..|.+++++++|+|+++.
T Consensus 1 ~~~~~l~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 75 (251)
T TIGR03534 1 DAELLLAHVLGKDRTDLLL----H-PEKELTPEELARFEALLARRAKGEPVAYILGEREFYGLDFKVSPGVLIPRPDTEE 75 (251)
T ss_pred CHHHHHHHHHCcCHHHHhh----c-ccCCCCHHHHHHHHHHHHHHHcCCCHHHHcccceEeceEEEECCCcccCCCChHH
Confidence 4689999999997654321 1 1223445555566666677789999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+++.+++.+ .. .+.+|||+|||+|++++.++..+ ++.+|+|+|+|+.+++.|++|++.
T Consensus 76 l~~~~l~~~-~~----~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~ 133 (251)
T TIGR03534 76 LVEAALERL-KK----GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAAR 133 (251)
T ss_pred HHHHHHHhc-cc----CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence 999988876 21 23579999999999999999985 778999999999999999999864
No 11
>PLN02672 methionine S-methyltransferase
Probab=99.68 E-value=1.6e-16 Score=164.52 Aligned_cols=87 Identities=25% Similarity=0.296 Sum_probs=74.2
Q ss_pred eeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHH
Q 026108 153 VGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLA 232 (243)
Q Consensus 153 ~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~A 232 (243)
.|.++|++++|.|+|+||||||+||.+++. +... . ....++.+|||||||||+|++.+++++ ++++|+|+|+|++|
T Consensus 79 ~G~~~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~-~-~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~A 154 (1082)
T PLN02672 79 EGFRNRKKLTMMEIPSIFIPEDWSFTFYEG-LNRH-P-DSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRA 154 (1082)
T ss_pred CCeEEecCCceeeCCCcccCchhHHHHHHH-HHhc-c-cccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHH
Confidence 478899999999999999999999999998 4332 1 111134579999999999999999986 77899999999999
Q ss_pred HHHHHHHHHhC
Q 026108 233 AAVAAFNAQRI 243 (243)
Q Consensus 233 L~~Ar~Na~~~ 243 (243)
+++|++|+++|
T Consensus 155 l~~A~~Na~~n 165 (1082)
T PLN02672 155 VKVAWINLYLN 165 (1082)
T ss_pred HHHHHHHHHHc
Confidence 99999999863
No 12
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.39 E-value=1.1e-12 Score=109.79 Aligned_cols=74 Identities=36% Similarity=0.539 Sum_probs=63.6
Q ss_pred cccccCCCcccCC---ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108 161 LVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (243)
Q Consensus 161 l~f~v~~~vliPR---p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar 237 (243)
++|...++||.|+ +.|++|++.+... +..+|||+|||+|++++.+++.. ++.+|+++|+|+.|++.|+
T Consensus 2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~ 72 (170)
T PF05175_consen 2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAK 72 (170)
T ss_dssp EEEEEETTSTTTTSHHHHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHH
T ss_pred EEEEECCCeeCCCCCCHHHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHH
Confidence 5688899999965 6788888876542 24579999999999999999985 8889999999999999999
Q ss_pred HHHHhC
Q 026108 238 FNAQRI 243 (243)
Q Consensus 238 ~Na~~~ 243 (243)
+|++.|
T Consensus 73 ~n~~~n 78 (170)
T PF05175_consen 73 RNAERN 78 (170)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999875
No 13
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=6.4e-12 Score=114.62 Aligned_cols=102 Identities=27% Similarity=0.534 Sum_probs=80.0
Q ss_pred hHHHHHHHHHhhhcCCCcee---EEeeeccccc-------cccccCCCcccC---CccHHHHHHHHHHHhhhcCCCCCCC
Q 026108 131 GLDELYGLWKQRIEKRKPFQ---YLVGCEHWRD-------LVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDG 197 (243)
Q Consensus 131 ~~~~~~~~~~~R~~~~~Pl~---yi~g~~~f~~-------l~f~v~~~vliP---Rp~TElLv~~v~~~l~~~~~~~~~~ 197 (243)
..++|...|++-+ .|+. .++....|.. ..+.++||+-+- +|.|.++++++.+.+ . ++.
T Consensus 94 ~e~DW~~~wk~~~---~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~-~-----~g~ 164 (300)
T COG2264 94 DEEDWEREWKKYF---HPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPTTSLCLEALEKLL-K-----KGK 164 (300)
T ss_pred ChHHHHHHHHhcC---CcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCCChhHHHHHHHHHHhh-c-----CCC
Confidence 3478888898655 5653 3444445542 336778888775 599999999988766 1 467
Q ss_pred cEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 198 rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
+|||+|||||.++|++++. |+ .+|+|+|++|.|++.|++|+++|
T Consensus 165 ~vlDvGcGSGILaIAa~kL-GA-~~v~g~DiDp~AV~aa~eNa~~N 208 (300)
T COG2264 165 TVLDVGCGSGILAIAAAKL-GA-KKVVGVDIDPQAVEAARENARLN 208 (300)
T ss_pred EEEEecCChhHHHHHHHHc-CC-ceEEEecCCHHHHHHHHHHHHHc
Confidence 8999999999999999984 54 58999999999999999999876
No 14
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.29 E-value=8.4e-12 Score=113.93 Aligned_cols=102 Identities=29% Similarity=0.569 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhhhcCCCcee---EEeeeccccc-------cccccCCCcccC---CccHHHHHHHHHHHhhhcCCCCCCC
Q 026108 131 GLDELYGLWKQRIEKRKPFQ---YLVGCEHWRD-------LVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDG 197 (243)
Q Consensus 131 ~~~~~~~~~~~R~~~~~Pl~---yi~g~~~f~~-------l~f~v~~~vliP---Rp~TElLv~~v~~~l~~~~~~~~~~ 197 (243)
+.++|.+.|++.+ +|+. .++-...|.. ..+.++|++-+- +|.|.++++.+.+.. . ++.
T Consensus 93 ~~~dW~~~Wk~~~---~P~~vg~~~~I~P~w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~-~-----~g~ 163 (295)
T PF06325_consen 93 EEEDWEEAWKKYF---KPIRVGDRLVIVPSWEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKYV-K-----PGK 163 (295)
T ss_dssp -HHCHHHHHHHH------EEECTTEEEEETT----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHHS-S-----TTS
T ss_pred ccccchHHHHhcC---ccEEECCcEEEECCCcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHhc-c-----CCC
Confidence 5578999998776 5552 1222333322 346678887775 599999999887765 1 356
Q ss_pred cEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 198 rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
+|||+|||||.++|+.++. |. .+|+|+|+++.|++.|++|++.|
T Consensus 164 ~vLDvG~GSGILaiaA~kl-GA-~~v~a~DiDp~Av~~a~~N~~~N 207 (295)
T PF06325_consen 164 RVLDVGCGSGILAIAAAKL-GA-KKVVAIDIDPLAVEAARENAELN 207 (295)
T ss_dssp EEEEES-TTSHHHHHHHHT-TB-SEEEEEESSCHHHHHHHHHHHHT
T ss_pred EEEEeCCcHHHHHHHHHHc-CC-CeEEEecCCHHHHHHHHHHHHHc
Confidence 8999999999999999984 54 58999999999999999999876
No 15
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.29 E-value=2.2e-11 Score=116.38 Aligned_cols=91 Identities=23% Similarity=0.164 Sum_probs=77.1
Q ss_pred CCCceeEEeee--------ccccccccccCCCcccC--CccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHH
Q 026108 145 KRKPFQYLVGC--------EHWRDLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIA 214 (243)
Q Consensus 145 ~~~Pl~yi~g~--------~~f~~l~f~v~~~vliP--Rp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA 214 (243)
.++|.+|+.|. .+|+|+.|.++++.|+. +..+|.+++.+++++ . ..++.+|||+|||+|.+++.+|
T Consensus 241 ~~~~~~~i~g~~~~~~~~~~~~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l-~---~~~~~~VLDlgcGtG~~sl~la 316 (443)
T PRK13168 241 KGPDLVHLLGPADAQLSYYLPEFGLRLAFSPRDFIQVNAQVNQKMVARALEWL-D---PQPGDRVLDLFCGLGNFTLPLA 316 (443)
T ss_pred CCCcceeecccccCCcceEEEcCCeEEEECCCCeEEcCHHHHHHHHHHHHHHh-c---CCCCCEEEEEeccCCHHHHHHH
Confidence 46899999886 24778999999999985 467899999999887 2 1235689999999999999999
Q ss_pred HHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 215 RVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 215 ~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+.. .+|+|+|+|++|++.|++|++.
T Consensus 317 ~~~---~~V~gvD~s~~al~~A~~n~~~ 341 (443)
T PRK13168 317 RQA---AEVVGVEGVEAMVERARENARR 341 (443)
T ss_pred HhC---CEEEEEeCCHHHHHHHHHHHHH
Confidence 863 6999999999999999999875
No 16
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.24 E-value=6e-11 Score=102.58 Aligned_cols=92 Identities=18% Similarity=0.248 Sum_probs=72.3
Q ss_pred CCCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEE
Q 026108 145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (243)
Q Consensus 145 ~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~ 224 (243)
.|.+.-||+|.. |+|+.+.+.++--. ||.++.+.+.++.++. . ..++.+|||||||||++++.++.+. . .+|+
T Consensus 8 ~~~~~mrIi~g~-~~g~~l~~~~~~~~-Rp~~d~v~e~l~~~l~-~--~~~~~~vLDl~~GsG~l~l~~lsr~-a-~~V~ 80 (199)
T PRK10909 8 SGSGQIRIIGGQ-WRGRKLPVPDSPGL-RPTTDRVRETLFNWLA-P--VIVDARCLDCFAGSGALGLEALSRY-A-AGAT 80 (199)
T ss_pred CCCCCEEEEeec-cCCCEeCCCCCCCc-CcCCHHHHHHHHHHHh-h--hcCCCEEEEcCCCccHHHHHHHHcC-C-CEEE
Confidence 344556898886 68999988554322 9999999999998872 1 1235689999999999999755542 3 6999
Q ss_pred EEeCCHHHHHHHHHHHHhC
Q 026108 225 AVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 225 avDiS~~AL~~Ar~Na~~~ 243 (243)
++|+++++++.|++|++.+
T Consensus 81 ~vE~~~~a~~~a~~Nl~~~ 99 (199)
T PRK10909 81 LLEMDRAVAQQLIKNLATL 99 (199)
T ss_pred EEECCHHHHHHHHHHHHHh
Confidence 9999999999999998753
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.18 E-value=2.6e-11 Score=116.24 Aligned_cols=79 Identities=22% Similarity=0.203 Sum_probs=68.1
Q ss_pred eeE----EeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEE
Q 026108 149 FQY----LVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (243)
Q Consensus 149 l~y----i~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~ 224 (243)
++| |+|...|+|.+|.+.++++ +|+.+++.+. + .++.+|||+|||+|++++.+++.+ +.+|+
T Consensus 228 ~~y~~~~i~~~~~f~g~~~~v~~~v~----~te~l~~~~~--~------~~~~~vLDiGcG~G~~~~~la~~~--~~~v~ 293 (475)
T PLN02336 228 VQYKSSGILRYERVFGEGFVSTGGLE----TTKEFVDKLD--L------KPGQKVLDVGCGIGGGDFYMAENF--DVHVV 293 (475)
T ss_pred hccccccHHHHHHHhCCCCCCCchHH----HHHHHHHhcC--C------CCCCEEEEEeccCCHHHHHHHHhc--CCEEE
Confidence 999 9999999999999999987 6777776542 1 134689999999999999999874 57999
Q ss_pred EEeCCHHHHHHHHHHHH
Q 026108 225 AVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 225 avDiS~~AL~~Ar~Na~ 241 (243)
|+|+|+++++.|++|+.
T Consensus 294 gvDiS~~~l~~A~~~~~ 310 (475)
T PLN02336 294 GIDLSVNMISFALERAI 310 (475)
T ss_pred EEECCHHHHHHHHHHhh
Confidence 99999999999999874
No 18
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.14 E-value=2.2e-10 Score=105.74 Aligned_cols=85 Identities=20% Similarity=0.220 Sum_probs=66.7
Q ss_pred cccccc-ccCCCcccCC-ccHHHHHHHHHHHhhhcC----CCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHH
Q 026108 158 WRDLVL-SVEEGVFIPR-PETELMVDLVSDVLVRDN----DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL 231 (243)
Q Consensus 158 f~~l~f-~v~~~vliPR-p~TElLv~~v~~~l~~~~----~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~ 231 (243)
++|+++ .+.++-|+|. |.---.+.++.+++.... +..++.++||||||+|+|...++.+. ++++++|+||++.
T Consensus 71 ~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~ 149 (321)
T PRK11727 71 FYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQ 149 (321)
T ss_pred hcCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHH
Confidence 357774 6889999997 766666777777652111 11235689999999999999998875 7899999999999
Q ss_pred HHHHHHHHHHhC
Q 026108 232 AAAVAAFNAQRI 243 (243)
Q Consensus 232 AL~~Ar~Na~~~ 243 (243)
|++.|++|++.|
T Consensus 150 Al~~A~~Nv~~N 161 (321)
T PRK11727 150 ALASAQAIISAN 161 (321)
T ss_pred HHHHHHHHHHhc
Confidence 999999999875
No 19
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.09 E-value=3.2e-10 Score=86.94 Aligned_cols=45 Identities=31% Similarity=0.580 Sum_probs=41.9
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
+.+|||||||+|.+++.+++.. ++++|+|+|+|+++++.|++|+.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~ 46 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAA 46 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHH
T ss_pred CCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHH
Confidence 5689999999999999999975 78999999999999999999983
No 20
>PRK14967 putative methyltransferase; Provisional
Probab=99.09 E-value=3.9e-10 Score=98.13 Aligned_cols=78 Identities=33% Similarity=0.357 Sum_probs=64.6
Q ss_pred ccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108 158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (243)
Q Consensus 158 f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar 237 (243)
+-++.+.+.++++.|..+++++.+.+...- ..++.+|||+|||+|.+++.+++. + ..+|+++|+|+.+++.|+
T Consensus 4 ~~~~~~~~~~g~~~p~~ds~~l~~~l~~~~-----~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~ 76 (223)
T PRK14967 4 TPPDALLRAPGVYRPQEDTQLLADALAAEG-----LGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSAR 76 (223)
T ss_pred CCCceeecCCCCcCCCCcHHHHHHHHHhcc-----cCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHH
Confidence 346788999999999999999888765421 123468999999999999999985 2 359999999999999999
Q ss_pred HHHHh
Q 026108 238 FNAQR 242 (243)
Q Consensus 238 ~Na~~ 242 (243)
+|++.
T Consensus 77 ~n~~~ 81 (223)
T PRK14967 77 LNALL 81 (223)
T ss_pred HHHHH
Confidence 99864
No 21
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.1e-10 Score=112.15 Aligned_cols=91 Identities=26% Similarity=0.364 Sum_probs=77.7
Q ss_pred CCceeEEeee----ccccccccccCCCcccCC--ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCC
Q 026108 146 RKPFQYLVGC----EHWRDLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS 219 (243)
Q Consensus 146 ~~Pl~yi~g~----~~f~~l~f~v~~~vliPR--p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p 219 (243)
+.|++++-|+ ..+.|+.|.++++.|++- +.+|.|...+-+|.. ...+..++|+|||||.|++++|+..
T Consensus 332 ~~~~~l~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~----l~~~k~llDv~CGTG~iglala~~~-- 405 (534)
T KOG2187|consen 332 GKPLQLVGGDPYITESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAG----LPADKTLLDVCCGTGTIGLALARGV-- 405 (534)
T ss_pred CCCeEEEccccEEEeecCCeEEEECCchhhccCcHHHHHHHHHHHHHhC----CCCCcEEEEEeecCCceehhhhccc--
Confidence 3677777664 467799999999999996 899999999999882 2234679999999999999999974
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 220 KGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 220 ~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
..|+||+++++|++-|++||+.|
T Consensus 406 -~~ViGvEi~~~aV~dA~~nA~~N 428 (534)
T KOG2187|consen 406 -KRVIGVEISPDAVEDAEKNAQIN 428 (534)
T ss_pred -cceeeeecChhhcchhhhcchhc
Confidence 79999999999999999999875
No 22
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.07 E-value=2.5e-10 Score=107.50 Aligned_cols=75 Identities=23% Similarity=0.379 Sum_probs=61.3
Q ss_pred ccccccCCCcccCC---ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108 160 DLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (243)
Q Consensus 160 ~l~f~v~~~vliPR---p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A 236 (243)
++.+...++||... ..|+++.+.+.. ...++|||||||+|.+++.+++.. |+++|+++|+|+.|++.|
T Consensus 198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~--------~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A 268 (378)
T PRK15001 198 DWTIHNHANVFSRTGLDIGARFFMQHLPE--------NLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASS 268 (378)
T ss_pred eEEEEecCCccCCCCcChHHHHHHHhCCc--------ccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHH
Confidence 56777789999985 557777665321 123589999999999999999985 889999999999999999
Q ss_pred HHHHHhC
Q 026108 237 AFNAQRI 243 (243)
Q Consensus 237 r~Na~~~ 243 (243)
++|++.|
T Consensus 269 ~~N~~~n 275 (378)
T PRK15001 269 RLNVETN 275 (378)
T ss_pred HHHHHHc
Confidence 9998754
No 23
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.00 E-value=1.6e-09 Score=99.32 Aligned_cols=79 Identities=18% Similarity=0.215 Sum_probs=65.0
Q ss_pred ccccccccCCCcccCC--ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 026108 158 WRDLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (243)
Q Consensus 158 f~~l~f~v~~~vliPR--p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~ 235 (243)
+.+..|.+.++.|++. ..++.+.+.+.+++ .. .++.+|||+|||+|.+++.+|+. +.+|+|+|+|+.|++.
T Consensus 138 ~~~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l-~~---~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~ 210 (315)
T PRK03522 138 FNGVPLFIRPQSFFQTNPAVAAQLYATARDWV-RE---LPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIAC 210 (315)
T ss_pred ECCEEEEECCCeeeecCHHHHHHHHHHHHHHH-Hh---cCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHH
Confidence 4567899999999886 45677888888877 21 13468999999999999999985 3799999999999999
Q ss_pred HHHHHHhC
Q 026108 236 AAFNAQRI 243 (243)
Q Consensus 236 Ar~Na~~~ 243 (243)
|++|++.+
T Consensus 211 A~~n~~~~ 218 (315)
T PRK03522 211 AKQSAAEL 218 (315)
T ss_pred HHHHHHHc
Confidence 99999753
No 24
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.00 E-value=2.3e-09 Score=95.07 Aligned_cols=105 Identities=26% Similarity=0.428 Sum_probs=70.1
Q ss_pred hHHHHHHHHHhhhcCCCceeEEeeeccccc------cccccCCCcccC---CccHHHHHHHHHHHhhhcCCCCCCCcEEE
Q 026108 131 GLDELYGLWKQRIEKRKPFQYLVGCEHWRD------LVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFWVD 201 (243)
Q Consensus 131 ~~~~~~~~~~~R~~~~~Pl~yi~g~~~f~~------l~f~v~~~vliP---Rp~TElLv~~v~~~l~~~~~~~~~~rVLD 201 (243)
+.++|.+.|++.+..-+--..+.-...|.. ..+.++|++-+. ++.|..+++.+.... .++.+|||
T Consensus 52 ~~~dw~~~w~~~~~p~~~g~~~~i~p~~~~~~~~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~------~~~~~VLD 125 (250)
T PRK00517 52 EDEDWEREWKKYFHPIRIGDRLWIVPSWEDPPDPDEINIELDPGMAFGTGTHPTTRLCLEALEKLV------LPGKTVLD 125 (250)
T ss_pred CchhHHHHHHHHCCCEEEcCCEEEECCCcCCCCCCeEEEEECCCCccCCCCCHHHHHHHHHHHhhc------CCCCEEEE
Confidence 446888999877632111112333333432 234455655443 367777776665433 14568999
Q ss_pred eccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 202 LGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
+|||+|.+++.+++. ++ .+|+|+|+|+.+++.|++|++.+
T Consensus 126 iGcGsG~l~i~~~~~-g~-~~v~giDis~~~l~~A~~n~~~~ 165 (250)
T PRK00517 126 VGCGSGILAIAAAKL-GA-KKVLAVDIDPQAVEAARENAELN 165 (250)
T ss_pred eCCcHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHc
Confidence 999999999988774 44 47999999999999999998754
No 25
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.99 E-value=2.9e-09 Score=96.50 Aligned_cols=102 Identities=28% Similarity=0.579 Sum_probs=73.1
Q ss_pred hHHHHHHHHHhhhcCCCceeE---Eeeecccc-------ccccccCCCcccC---CccHHHHHHHHHHHhhhcCCCCCCC
Q 026108 131 GLDELYGLWKQRIEKRKPFQY---LVGCEHWR-------DLVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDG 197 (243)
Q Consensus 131 ~~~~~~~~~~~R~~~~~Pl~y---i~g~~~f~-------~l~f~v~~~vliP---Rp~TElLv~~v~~~l~~~~~~~~~~ 197 (243)
..++|.+.|++.. .|+.+ ++-...|. ...+.++|+..+. +|.|.+..+.+.... .++.
T Consensus 91 ~~~dW~~~w~~~~---~p~~~g~~~~i~p~w~~~~~~~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~------~~g~ 161 (288)
T TIGR00406 91 FSKDWERAWKDNF---HPVQFGKRFWICPSWRDVPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLD------LKDK 161 (288)
T ss_pred chhhHHHHHHHhC---CCEEEcCeEEEECCCcCCCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHhhc------CCCC
Confidence 3578999999776 44432 22223332 2346678888764 477777766654433 1356
Q ss_pred cEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 198 rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
+|||+|||+|.+++.+++. + ..+|+|+|+|+.|++.|++|++.+
T Consensus 162 ~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n 205 (288)
T TIGR00406 162 NVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELN 205 (288)
T ss_pred EEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHc
Confidence 8999999999999998874 3 369999999999999999998753
No 26
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.99 E-value=1.8e-09 Score=102.66 Aligned_cols=91 Identities=21% Similarity=0.248 Sum_probs=71.6
Q ss_pred CCceeEEeeecc----ccccccccCCCcccCC--ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCC
Q 026108 146 RKPFQYLVGCEH----WRDLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS 219 (243)
Q Consensus 146 ~~Pl~yi~g~~~----f~~l~f~v~~~vliPR--p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p 219 (243)
+++...+.|+.. +.+..|.++++.|++. ..++.+++.+.+++ . ..++.+|||+|||+|.+++.+|+..
T Consensus 241 g~~~~~l~G~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l-~---~~~~~~vLDl~cG~G~~sl~la~~~-- 314 (431)
T TIGR00479 241 GEETEQIAGEGPIYEKSGDLSFSLSARDFFQVNSGQNEKLVDRALEAL-E---LQGEELVVDAYCGVGTFTLPLAKQA-- 314 (431)
T ss_pred CCceEEEeCCCeEEEEECCEEEEECCCceeecCHHHHHHHHHHHHHHh-c---cCCCCEEEEcCCCcCHHHHHHHHhC--
Confidence 345566666543 3377899999999974 56777888888776 2 1234689999999999999999863
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 220 KGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 220 ~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
.+|+|+|+|+.|++.|++|++.+
T Consensus 315 -~~V~~vE~~~~av~~a~~n~~~~ 337 (431)
T TIGR00479 315 -KSVVGIEVVPESVEKAQQNAELN 337 (431)
T ss_pred -CEEEEEEcCHHHHHHHHHHHHHh
Confidence 59999999999999999998753
No 27
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=9.8e-10 Score=100.18 Aligned_cols=75 Identities=24% Similarity=0.341 Sum_probs=63.2
Q ss_pred ccccccCCCcccCC---ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108 160 DLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (243)
Q Consensus 160 ~l~f~v~~~vliPR---p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A 236 (243)
++.|...|+||.-. ..|++|++.+... .+.+|||+|||.|.||+.+|+.. |+.+|+.+|+|..||+.|
T Consensus 128 ~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~--------~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~a 198 (300)
T COG2813 128 ELTFKTLPGVFSRDKLDKGSRLLLETLPPD--------LGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESA 198 (300)
T ss_pred ceEEEeCCCCCcCCCcChHHHHHHHhCCcc--------CCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHH
Confidence 56788899999964 7788887765331 23479999999999999999985 899999999999999999
Q ss_pred HHHHHhC
Q 026108 237 AFNAQRI 243 (243)
Q Consensus 237 r~Na~~~ 243 (243)
|+|++.|
T Consensus 199 r~Nl~~N 205 (300)
T COG2813 199 RKNLAAN 205 (300)
T ss_pred HHhHHHc
Confidence 9999865
No 28
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.99 E-value=1.7e-09 Score=90.70 Aligned_cols=63 Identities=25% Similarity=0.394 Sum_probs=51.9
Q ss_pred cccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 169 vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
|++||+++-+|.+.+. .. ++.+|||+|||+|.+++.++... + +|+++|+|+++++.|++|++.
T Consensus 1 ~~~~~~d~~~l~~~l~-~~-------~~~~vLdlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~ 63 (179)
T TIGR00537 1 VYEPAEDSLLLEANLR-EL-------KPDDVLEIGAGTGLVAIRLKGKG-K--CILTTDINPFAVKELRENAKL 63 (179)
T ss_pred CCCCCccHHHHHHHHH-hc-------CCCeEEEeCCChhHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHHHH
Confidence 6899999977666542 22 34579999999999999999862 3 999999999999999999864
No 29
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.98 E-value=2e-09 Score=99.14 Aligned_cols=81 Identities=22% Similarity=0.141 Sum_probs=65.6
Q ss_pred ccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108 158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (243)
Q Consensus 158 f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar 237 (243)
+++....+....+.+++.++.+++.+++++ ......++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|+
T Consensus 108 iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l-~~~~~~~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~ 183 (315)
T PLN02585 108 IYGETDEVNKVQLDIRLGHAQTVEKVLLWL-AEDGSLAGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAE 183 (315)
T ss_pred hcCCccccCceeeecccChHHHHHHHHHHH-HhcCCCCCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHH
Confidence 355556677778888999988899888887 3221234578999999999999999985 479999999999999999
Q ss_pred HHHHh
Q 026108 238 FNAQR 242 (243)
Q Consensus 238 ~Na~~ 242 (243)
+|++.
T Consensus 184 ~~~~~ 188 (315)
T PLN02585 184 RRAKE 188 (315)
T ss_pred HHHHh
Confidence 99753
No 30
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.97 E-value=3.2e-09 Score=90.91 Aligned_cols=86 Identities=17% Similarity=0.217 Sum_probs=68.2
Q ss_pred EEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH
Q 026108 151 YLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP 230 (243)
Q Consensus 151 yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~ 230 (243)
.|+|. .|.|..+.+.++.. -||.+..+.+.+..++. . ..++.++||||||||.+++.++.+ |+ .+|++||+++
T Consensus 10 rIi~G-~~kg~~l~~p~~~~-~rpt~~~vrea~f~~l~-~--~~~g~~vLDLfaGsG~lglea~sr-ga-~~v~~vE~~~ 82 (189)
T TIGR00095 10 IIIGG-WRGGRLLKLPPGGS-TRPTTRVVRELFFNILR-P--EIQGAHLLDVFAGSGLLGEEALSR-GA-KVAFLEEDDR 82 (189)
T ss_pred EEEeh-hhCCcccCCCCCCC-CCCchHHHHHHHHHHHH-H--hcCCCEEEEecCCCcHHHHHHHhC-CC-CEEEEEeCCH
Confidence 45553 46678887766654 47999999888888772 1 234678999999999999999997 44 5899999999
Q ss_pred HHHHHHHHHHHhC
Q 026108 231 LAAAVAAFNAQRI 243 (243)
Q Consensus 231 ~AL~~Ar~Na~~~ 243 (243)
.|++.+++|++.+
T Consensus 83 ~a~~~~~~N~~~~ 95 (189)
T TIGR00095 83 KANQTLKENLALL 95 (189)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998753
No 31
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.96 E-value=1.7e-09 Score=91.88 Aligned_cols=64 Identities=19% Similarity=0.149 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 177 ElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+.+.+.+.+.+ .......+.+|||+|||+|.+++.+|... ++++|+|+|+|+++++.+++|+++
T Consensus 25 ~~~~~~~~d~i-~~~~~~~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~ 88 (181)
T TIGR00138 25 EIWERHILDSL-KLLEYLDGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAE 88 (181)
T ss_pred HHHHHHHHHHH-HHHHhcCCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHH
Confidence 55555554433 11112246789999999999999999864 778999999999999999999875
No 32
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.96 E-value=1.7e-09 Score=93.61 Aligned_cols=86 Identities=19% Similarity=0.171 Sum_probs=62.3
Q ss_pred EEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhc-CCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCC
Q 026108 151 YLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRD-NDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLN 229 (243)
Q Consensus 151 yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~-~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS 229 (243)
|+++...||+-+| -..+++|..++.++...+.++... ....++.+|||+|||+|.++..++..+ ++.+|+|+|+|
T Consensus 1 ~~~~~~~fw~~~~---g~~~~~rn~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS 76 (204)
T TIGR03587 1 MKTEQEQFWAGEF---GKEYIDRNSRQSLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEIN 76 (204)
T ss_pred CcchHHHHhcCcc---cchhhhccccHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECC
Confidence 3566677777776 233888876776555444433110 011234679999999999999999875 67899999999
Q ss_pred HHHHHHHHHHH
Q 026108 230 PLAAAVAAFNA 240 (243)
Q Consensus 230 ~~AL~~Ar~Na 240 (243)
++|++.|++|.
T Consensus 77 ~~~l~~A~~~~ 87 (204)
T TIGR03587 77 EYAVEKAKAYL 87 (204)
T ss_pred HHHHHHHHhhC
Confidence 99999999874
No 33
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.94 E-value=3.2e-09 Score=99.66 Aligned_cols=79 Identities=18% Similarity=0.226 Sum_probs=63.3
Q ss_pred ccccccccCCCcccCC--ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 026108 158 WRDLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (243)
Q Consensus 158 f~~l~f~v~~~vliPR--p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~ 235 (243)
+.|..|.++++.|++- ...+.+.+.+.+++ .. ..+.+|||||||+|.+++.+|.. +.+|+|||+|+.|++.
T Consensus 198 ~~g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l-~~---~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~ 270 (374)
T TIGR02085 198 FNDVPLVIRPQSFFQTNPKVAAQLYATARQWV-RE---IPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIAC 270 (374)
T ss_pred ECCEEEEECCCccccCCHHHHHHHHHHHHHHH-Hh---cCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHH
Confidence 4467899999999874 55666677776665 21 13457999999999999999974 3799999999999999
Q ss_pred HHHHHHhC
Q 026108 236 AAFNAQRI 243 (243)
Q Consensus 236 Ar~Na~~~ 243 (243)
|++|++.+
T Consensus 271 a~~N~~~~ 278 (374)
T TIGR02085 271 AQQSAQML 278 (374)
T ss_pred HHHHHHHc
Confidence 99999753
No 34
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.91 E-value=3.1e-09 Score=98.91 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=60.9
Q ss_pred ccccccCCCcccCC---ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108 160 DLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (243)
Q Consensus 160 ~l~f~v~~~vliPR---p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A 236 (243)
++.+...++||.+. +.|+++.+.+... ..++|||+|||+|.+++.+++.. |+.+|+++|+|+.|++.|
T Consensus 166 ~l~i~~~pgvFs~~~lD~gt~lLl~~l~~~--------~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A 236 (342)
T PRK09489 166 GLTVKTLPGVFSRDGLDVGSQLLLSTLTPH--------TKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESS 236 (342)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHhcccc--------CCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHH
Confidence 45677889999974 5677776654321 23479999999999999999985 788999999999999999
Q ss_pred HHHHHhC
Q 026108 237 AFNAQRI 243 (243)
Q Consensus 237 r~Na~~~ 243 (243)
++|++++
T Consensus 237 ~~nl~~n 243 (342)
T PRK09489 237 RATLAAN 243 (342)
T ss_pred HHHHHHc
Confidence 9998764
No 35
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.90 E-value=4.1e-09 Score=85.99 Aligned_cols=48 Identities=29% Similarity=0.412 Sum_probs=41.7
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
++.+|||+|||+|.+++.++.+.+++.+|+|+|+|+++++.|++++++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~ 50 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE 50 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc
Confidence 356899999999999999996555789999999999999999998764
No 36
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.90 E-value=7.1e-09 Score=87.57 Aligned_cols=61 Identities=28% Similarity=0.337 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 177 ElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+.+...++..+ . ..++.+|||+|||+|.+++.+++.. ++.+|+++|+|+.+++.|++|+++
T Consensus 17 ~~~r~~~~~~l-~---~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~ 77 (187)
T PRK08287 17 EEVRALALSKL-E---LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQR 77 (187)
T ss_pred HHHHHHHHHhc-C---CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence 33444455544 1 1245689999999999999999985 788999999999999999999875
No 37
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.89 E-value=6.9e-09 Score=88.89 Aligned_cols=47 Identities=21% Similarity=0.141 Sum_probs=43.0
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
+.+|||+|||+|.+++.+|+.. ++++|+|+|+|+++++.|++|++.+
T Consensus 46 g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~ 92 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAEL 92 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHc
Confidence 5789999999999999999875 7899999999999999999998753
No 38
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=7.6e-09 Score=88.78 Aligned_cols=49 Identities=39% Similarity=0.637 Sum_probs=43.5
Q ss_pred CCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 192 ~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+...+..|+|||||+|.+++.++.. |+ ..|+|||++++|++++++|+.+
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~l-Ga-~~V~~vdiD~~a~ei~r~N~~~ 90 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALL-GA-SRVLAVDIDPEALEIARANAEE 90 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhc-CC-cEEEEEecCHHHHHHHHHHHHh
Confidence 4556678999999999999999985 66 6999999999999999999974
No 39
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.85 E-value=7.3e-09 Score=92.45 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=59.3
Q ss_pred cccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 161 LVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 161 l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
..+..++.++-+..|+-+|..++.. ...++|||||||+|++++++|++. ++++|+|||+++++.+.|++|+
T Consensus 18 ~~I~q~~~~~~~~~DaiLL~~~~~~--------~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv 88 (248)
T COG4123 18 FFIIQDRCGFRYGTDAILLAAFAPV--------PKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNV 88 (248)
T ss_pred eEEEeCCCccccccHHHHHHhhccc--------ccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHH
Confidence 3445566777777787777665422 125789999999999999999986 6699999999999999999999
Q ss_pred HhC
Q 026108 241 QRI 243 (243)
Q Consensus 241 ~~~ 243 (243)
+.+
T Consensus 89 ~ln 91 (248)
T COG4123 89 ALN 91 (248)
T ss_pred HhC
Confidence 763
No 40
>PRK14968 putative methyltransferase; Provisional
Probab=98.85 E-value=1.1e-08 Score=85.04 Aligned_cols=66 Identities=30% Similarity=0.482 Sum_probs=56.3
Q ss_pred CCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 166 EEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 166 ~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+++++.|+.++.++.+.+.. .++.+|||+|||+|.+++.++.. +.+|+|+|+|+++++.|++|++.
T Consensus 2 ~~~~~~p~~~~~~l~~~~~~--------~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~ 67 (188)
T PRK14968 2 NDEVYEPAEDSFLLAENAVD--------KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKL 67 (188)
T ss_pred CCcccCcchhHHHHHHhhhc--------cCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHH
Confidence 57899999999988876542 13467999999999999999986 37999999999999999999854
No 41
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=1.7e-08 Score=96.68 Aligned_cols=77 Identities=18% Similarity=0.222 Sum_probs=65.8
Q ss_pred ccccccCCCcccCC--ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108 160 DLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (243)
Q Consensus 160 ~l~f~v~~~vliPR--p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar 237 (243)
+..|.+.++.|++- ..+|.|.+.+.+|+ .. .++.++|||.||.|.+++.||+.. .+|+|||++++|++.|+
T Consensus 260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~-~~---~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~ 332 (432)
T COG2265 260 GVSFQISPRSFFQVNPAVAEKLYETALEWL-EL---AGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQ 332 (432)
T ss_pred ceEEEeCCCCceecCHHHHHHHHHHHHHHH-hh---cCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHH
Confidence 46777888888874 78888999999998 22 234689999999999999999763 79999999999999999
Q ss_pred HHHHhC
Q 026108 238 FNAQRI 243 (243)
Q Consensus 238 ~Na~~~ 243 (243)
+||+.|
T Consensus 333 ~NA~~n 338 (432)
T COG2265 333 ENAAAN 338 (432)
T ss_pred HHHHHc
Confidence 999875
No 42
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.83 E-value=2.2e-08 Score=77.46 Aligned_cols=46 Identities=37% Similarity=0.590 Sum_probs=42.1
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+.+|||+|||+|.+++.+++++ ++.+|+++|+|+.+++.|++|++.
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~ 65 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARR 65 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHH
Confidence 4589999999999999999986 668999999999999999999865
No 43
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.81 E-value=5.7e-09 Score=97.35 Aligned_cols=76 Identities=22% Similarity=0.265 Sum_probs=60.1
Q ss_pred ccccccCCCcccCC--ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108 160 DLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (243)
Q Consensus 160 ~l~f~v~~~vliPR--p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar 237 (243)
++.|.++++.|++- ..++.+++.+.+++ .. .+..+|||+||+|.+++.||..+ .+|+|||+++.|++.|+
T Consensus 164 ~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l-~~----~~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~ 235 (352)
T PF05958_consen 164 GLSFRISPGSFFQVNPEQNEKLYEQALEWL-DL----SKGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDAR 235 (352)
T ss_dssp TEEEEEETTS---SBHHHHHHHHHHHHHHC-TT-----TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHH
T ss_pred ceEEEECCCcCccCcHHHHHHHHHHHHHHh-hc----CCCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHH
Confidence 46788899999985 78888999999988 21 12369999999999999999864 69999999999999999
Q ss_pred HHHHhC
Q 026108 238 FNAQRI 243 (243)
Q Consensus 238 ~Na~~~ 243 (243)
+|++.|
T Consensus 236 ~Na~~N 241 (352)
T PF05958_consen 236 ENAKLN 241 (352)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 999865
No 44
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.81 E-value=2.2e-08 Score=85.25 Aligned_cols=47 Identities=26% Similarity=0.458 Sum_probs=42.4
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
++.+|||+|||+|.+++.+++.. ++.+|+++|+|+++++.|++|+++
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~ 86 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDR 86 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 45689999999999999999864 778999999999999999999865
No 45
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.80 E-value=2.5e-08 Score=93.14 Aligned_cols=75 Identities=16% Similarity=0.300 Sum_probs=61.5
Q ss_pred cccccCCCcccCC--ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 161 LVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 161 l~f~v~~~vliPR--p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
+.|.++++.|.+- ..++.+++.+.+++ .. .+.+|||||||+|.+++.+++.. .+|+|||++++|++.|++
T Consensus 166 ~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~-~~----~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~ 237 (353)
T TIGR02143 166 FIYRQVENSFTQPNAAVNIKMLEWACEVT-QG----SKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQY 237 (353)
T ss_pred EEEEECCCCcccCCHHHHHHHHHHHHHHh-hc----CCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHH
Confidence 6788889998853 45678888888876 21 12369999999999999999874 599999999999999999
Q ss_pred HHHhC
Q 026108 239 NAQRI 243 (243)
Q Consensus 239 Na~~~ 243 (243)
|++.+
T Consensus 238 n~~~~ 242 (353)
T TIGR02143 238 NIAAN 242 (353)
T ss_pred HHHHc
Confidence 99754
No 46
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.80 E-value=1.6e-08 Score=94.67 Aligned_cols=75 Identities=20% Similarity=0.347 Sum_probs=62.6
Q ss_pred cccccCCCcccCC--ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 161 LVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 161 l~f~v~~~vliPR--p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
+.|.++++.|++- ..+|.+++.+.+++ .. .+.++||||||+|.+++.+++.. .+|+|||+|+.|++.|++
T Consensus 175 ~~~~~~~~sF~Q~N~~~~e~l~~~v~~~~-~~----~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~ 246 (362)
T PRK05031 175 FIYRQVENSFTQPNAAVNEKMLEWALDAT-KG----SKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQY 246 (362)
T ss_pred EEEEeCCCCeeccCHHHHHHHHHHHHHHh-hc----CCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHH
Confidence 6788899999874 56888899888877 21 12469999999999999999863 599999999999999999
Q ss_pred HHHhC
Q 026108 239 NAQRI 243 (243)
Q Consensus 239 Na~~~ 243 (243)
|++.+
T Consensus 247 N~~~~ 251 (362)
T PRK05031 247 NIAAN 251 (362)
T ss_pred HHHHh
Confidence 98753
No 47
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.77 E-value=4.5e-08 Score=84.32 Aligned_cols=60 Identities=27% Similarity=0.344 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
++..+.+.+ . ..++.+|||+|||+|.++..+++..++.++|+++|+++++++.|++|+++
T Consensus 60 ~~~~~~~~l-~---~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~ 119 (205)
T PRK13944 60 MVAMMCELI-E---PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER 119 (205)
T ss_pred HHHHHHHhc-C---CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 445555544 1 22456899999999999999998764467999999999999999999865
No 48
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.77 E-value=3.6e-08 Score=85.27 Aligned_cols=60 Identities=25% Similarity=0.381 Sum_probs=48.2
Q ss_pred HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
++..+++++ . ..++.+|||+|||+|.+++.+|+..+++.+|+++|+++++++.|++|+++
T Consensus 65 ~~~~~~~~l-~---~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~ 124 (215)
T TIGR00080 65 MVAMMTELL-E---LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK 124 (215)
T ss_pred HHHHHHHHh-C---CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 445555555 1 22457899999999999999999864456899999999999999999875
No 49
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.76 E-value=2.1e-08 Score=85.59 Aligned_cols=81 Identities=23% Similarity=0.334 Sum_probs=60.0
Q ss_pred cccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (243)
Q Consensus 157 ~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A 236 (243)
.|.|..+...++. .-||.+..+-+.+.+++. .. ...+.++|||+||||++|+.++.+ |. .+|+.||.++.|++..
T Consensus 7 ~~kgr~l~~p~~~-~~RPT~drvrealFniL~-~~-~~~g~~vLDLFaGSGalGlEALSR-GA-~~v~fVE~~~~a~~~i 81 (183)
T PF03602_consen 7 KYKGRKLKTPKGD-NTRPTTDRVREALFNILQ-PR-NLEGARVLDLFAGSGALGLEALSR-GA-KSVVFVEKNRKAIKII 81 (183)
T ss_dssp TTTT-EEE-TT---TS-SSSHHHHHHHHHHHH-CH--HTT-EEEETT-TTSHHHHHHHHT-T--SEEEEEES-HHHHHHH
T ss_pred ecCCCEecCCCCC-CcCCCcHHHHHHHHHHhc-cc-ccCCCeEEEcCCccCccHHHHHhc-CC-CeEEEEECCHHHHHHH
Confidence 4567777766653 348999999999999983 21 146789999999999999998887 44 6999999999999999
Q ss_pred HHHHHh
Q 026108 237 AFNAQR 242 (243)
Q Consensus 237 r~Na~~ 242 (243)
++|++.
T Consensus 82 ~~N~~~ 87 (183)
T PF03602_consen 82 KKNLEK 87 (183)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999974
No 50
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.72 E-value=6.8e-08 Score=82.56 Aligned_cols=48 Identities=25% Similarity=0.529 Sum_probs=43.1
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
++.+|||+|||+|.+++.+|+..++..+|+++|+++++++.|++|++.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~ 87 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK 87 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 567899999999999999998765667999999999999999999875
No 51
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.70 E-value=3.5e-08 Score=76.17 Aligned_cols=44 Identities=32% Similarity=0.469 Sum_probs=40.4
Q ss_pred CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
.+|||+|||+|.+++.+++. + ..+++|+|+++.+++.|++|+..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~-~-~~~~~gvdi~~~~~~~a~~~~~~ 45 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRR-G-AARVTGVDIDPEAVELARRNLPR 45 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHH-C-TCEEEEEESSHHHHHHHHHHCHH
T ss_pred CEEEEcCcchHHHHHHHHHH-C-CCeEEEEEECHHHHHHHHHHHHH
Confidence 47999999999999999997 3 58999999999999999999875
No 52
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.68 E-value=8.3e-08 Score=83.25 Aligned_cols=76 Identities=25% Similarity=0.337 Sum_probs=54.5
Q ss_pred ccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108 160 DLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (243)
Q Consensus 160 ~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N 239 (243)
+..+.+..+..+-.| .++..+++.+ . ..++.+|||+|||+|.++..+++..+++++|+++|+++++++.|++|
T Consensus 48 d~~~~~~~g~~~~~p---~~~~~~~~~l-~---~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~ 120 (212)
T PRK13942 48 DTPLEIGYGQTISAI---HMVAIMCELL-D---LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKT 120 (212)
T ss_pred CCCccCCCCCEeCcH---HHHHHHHHHc-C---CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH
Confidence 444444444433222 2344444444 1 22457899999999999999998765567999999999999999999
Q ss_pred HHh
Q 026108 240 AQR 242 (243)
Q Consensus 240 a~~ 242 (243)
++.
T Consensus 121 l~~ 123 (212)
T PRK13942 121 LKK 123 (212)
T ss_pred HHH
Confidence 874
No 53
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.67 E-value=7.9e-08 Score=84.18 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=41.8
Q ss_pred CCCcEEEeccCCcHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~-~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
++.+|||+|||+|..++.+++.+ .|+++|+|+|+|+.+++.|++|++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~ 101 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA 101 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh
Confidence 35689999999999999999864 2578999999999999999998753
No 54
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.65 E-value=1.4e-07 Score=81.74 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=42.9
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
++.+|||+|||+|.+++.+++.++++.+|+|+|+|+.+++.|++|++.
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~ 92 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKD 92 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHh
Confidence 456899999999999999998765678999999999999999998753
No 55
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=1.2e-07 Score=81.13 Aligned_cols=76 Identities=25% Similarity=0.395 Sum_probs=62.2
Q ss_pred CCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 167 ~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
.+|+-|--||-+|++.+..-. .........-++|||||||++.-.|++..++++...++||++.|++..++.++.|
T Consensus 16 ~dVYEPaEDTFlLlDaLekd~-~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n 91 (209)
T KOG3191|consen 16 SDVYEPAEDTFLLLDALEKDA-AELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN 91 (209)
T ss_pred hhccCccchhhHHHHHHHHHH-HHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc
Confidence 388999999999999876644 2212222456999999999999999999888899999999999999988887654
No 56
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.63 E-value=1e-07 Score=84.26 Aligned_cols=48 Identities=23% Similarity=0.273 Sum_probs=41.6
Q ss_pred CCCcEEEeccCCcHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~-~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
++.+|||+|||+|..++.+++.+ .++++|+|+|+|+.+++.|++|++.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~ 104 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA 104 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh
Confidence 35689999999999999988742 3678999999999999999999864
No 57
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.63 E-value=1.8e-07 Score=80.23 Aligned_cols=49 Identities=31% Similarity=0.434 Sum_probs=44.8
Q ss_pred CCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 194 ~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
.++.+++|+|||||.+++.+|.. +|..+|+|+|.++++++..++|++++
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~f 81 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARF 81 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHh
Confidence 35678999999999999999965 69999999999999999999999874
No 58
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.61 E-value=2.8e-07 Score=79.08 Aligned_cols=86 Identities=20% Similarity=0.330 Sum_probs=70.7
Q ss_pred EEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH
Q 026108 151 YLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP 230 (243)
Q Consensus 151 yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~ 230 (243)
+|+|. .|.|..+.+.++-- -||.+..+-+.+.+|+. .. ...+.++|||++|||++|+..+.+ |. ..|+.||.+.
T Consensus 3 RIi~G-~~kgr~L~~p~~~~-~RPT~drVREalFNil~-~~-~i~g~~~LDlFAGSGaLGlEAlSR-GA-~~~~~vE~~~ 76 (187)
T COG0742 3 RIIGG-KYKGRKLKTPDGPG-TRPTTDRVREALFNILA-PD-EIEGARVLDLFAGSGALGLEALSR-GA-ARVVFVEKDR 76 (187)
T ss_pred EEEec-cccCCcccCCCCCC-cCCCchHHHHHHHHhcc-cc-ccCCCEEEEecCCccHhHHHHHhC-CC-ceEEEEecCH
Confidence 45554 46788888777633 38999999999999982 11 356889999999999999999997 44 7999999999
Q ss_pred HHHHHHHHHHHh
Q 026108 231 LAAAVAAFNAQR 242 (243)
Q Consensus 231 ~AL~~Ar~Na~~ 242 (243)
.|+...++|++.
T Consensus 77 ~a~~~l~~N~~~ 88 (187)
T COG0742 77 KAVKILKENLKA 88 (187)
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 59
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.60 E-value=9.1e-08 Score=82.34 Aligned_cols=47 Identities=13% Similarity=0.271 Sum_probs=42.4
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
++.+|||+|||+|.+++.+++.+ ++.+|+|+|+|+++++.|++|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~ 86 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEE 86 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHH
Confidence 34679999999999999999985 778999999999999999999864
No 60
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.59 E-value=2.1e-07 Score=83.26 Aligned_cols=46 Identities=30% Similarity=0.419 Sum_probs=40.7
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
++.+|||+|||+|.+++.+++.++++++|+|+|+|+++++.|+++.
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~ 118 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQ 118 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh
Confidence 3568999999999999999987656689999999999999998764
No 61
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.59 E-value=7.1e-08 Score=85.26 Aligned_cols=48 Identities=27% Similarity=0.476 Sum_probs=37.5
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
++.+|||+|||+|.+++.+++..+++++|+|+|+|+++|++|+++++.
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~ 94 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKR 94 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHh
Confidence 456899999999999999998876778999999999999999998753
No 62
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.59 E-value=8.7e-08 Score=86.62 Aligned_cols=44 Identities=27% Similarity=0.295 Sum_probs=39.7
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+++|||+|||+|..++.+|+. +.+|+|+|+|+.|++.+++|++.
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~ 164 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEK 164 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHH
Confidence 458999999999999999985 47999999999999999999864
No 63
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.58 E-value=1.6e-07 Score=80.28 Aligned_cols=44 Identities=25% Similarity=0.197 Sum_probs=39.3
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+.+|||+|||+|.+++.+|+. +.+|+|+|+|+.|++.++++++.
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~ 74 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKAR 74 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHH
Confidence 468999999999999999985 47999999999999999988753
No 64
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.56 E-value=1.1e-07 Score=81.10 Aligned_cols=46 Identities=15% Similarity=0.355 Sum_probs=42.1
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
..++||||||+|.+++.+|+.. |+.+|+|+|+++++++.|++|+++
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~ 62 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANK 62 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHH
Confidence 3579999999999999999986 889999999999999999998764
No 65
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.56 E-value=2.1e-07 Score=86.69 Aligned_cols=69 Identities=25% Similarity=0.244 Sum_probs=53.6
Q ss_pred cccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 169 vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
++.|++.++.+.+.+++.. .. ...+.+|||+|||+|.+++.+++.+ ++.+|+++|+|+++++.|++|..
T Consensus 90 ~~~~~~~~e~~r~~~l~~~-~l--~~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~ 158 (340)
T PLN02490 90 IINPGHWTEDMRDDALEPA-DL--SDRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP 158 (340)
T ss_pred CeecCcchHHHHHHHHhhc-cc--CCCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhh
Confidence 4556777777777666543 11 1134689999999999999999876 56899999999999999998753
No 66
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.55 E-value=1.4e-07 Score=71.72 Aligned_cols=43 Identities=30% Similarity=0.535 Sum_probs=34.6
Q ss_pred EEEeccCCcHHHHHHHHHh--CCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 199 WVDLGTGSGAIAIGIARVL--GSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 199 VLDLGtGSG~iai~LA~~~--~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
|||+|||+|.....+++.+ ++..+++|+|+|+++++.|+++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~ 45 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFS 45 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhch
Confidence 7999999999999999875 344799999999999999999874
No 67
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.53 E-value=2.2e-07 Score=85.04 Aligned_cols=83 Identities=27% Similarity=0.370 Sum_probs=48.2
Q ss_pred ccccc-ccCCCcccCC-ccHHHHHHHHHHHhhhcCCC-CCCCcEEEeccCCcHH-HHHHHHHhCCCcEEEEEeCCHHHHH
Q 026108 159 RDLVL-SVEEGVFIPR-PETELMVDLVSDVLVRDNDG-LRDGFWVDLGTGSGAI-AIGIARVLGSKGSIIAVDLNPLAAA 234 (243)
Q Consensus 159 ~~l~f-~v~~~vliPR-p~TElLv~~v~~~l~~~~~~-~~~~rVLDLGtGSG~i-ai~LA~~~~p~a~V~avDiS~~AL~ 234 (243)
+|+++ .+.++-|+|. |.---.+.++.+.+...... ....++||+|||.-|| .+..++.+ +++++|+||++.+++
T Consensus 63 fgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~ 140 (299)
T PF05971_consen 63 FGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLE 140 (299)
T ss_dssp H--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHH
T ss_pred cCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHH
Confidence 46766 7889999998 66555667777766222111 1245799999999999 45555554 799999999999999
Q ss_pred HHHHHHHhC
Q 026108 235 VAAFNAQRI 243 (243)
Q Consensus 235 ~Ar~Na~~~ 243 (243)
.|++|+++|
T Consensus 141 ~A~~nv~~N 149 (299)
T PF05971_consen 141 SARENVERN 149 (299)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999999876
No 68
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.53 E-value=1.7e-07 Score=83.37 Aligned_cols=47 Identities=21% Similarity=0.420 Sum_probs=42.7
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
++.+|||+|||||-+++.+++..+ .++|+|+|+|+.+|++|++.+..
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~ 97 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKK 97 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhc
Confidence 567899999999999999999974 78999999999999999987653
No 69
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.53 E-value=3.4e-07 Score=79.05 Aligned_cols=61 Identities=28% Similarity=0.332 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 176 TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
.+-+.+.++.++ .. ...++.+|||+|||+|.++..++.. +.+|+|+|+|+++++.|++++.
T Consensus 38 ~~~~~~~~~~~l-~~-~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~ 98 (219)
T TIGR02021 38 RAAMRRKLLDWL-PK-DPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQ 98 (219)
T ss_pred HHHHHHHHHHHH-hc-CCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHH
Confidence 334556666666 21 1224678999999999999999875 3699999999999999999875
No 70
>PHA03411 putative methyltransferase; Provisional
Probab=98.53 E-value=3.9e-07 Score=82.64 Aligned_cols=44 Identities=25% Similarity=0.322 Sum_probs=39.3
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
..+|||+|||+|.+++.++++. +..+|+|+|+|+.+++.|++|.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~ 108 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL 108 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC
Confidence 4579999999999999998874 4579999999999999999984
No 71
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.53 E-value=2.5e-07 Score=81.83 Aligned_cols=44 Identities=34% Similarity=0.350 Sum_probs=39.9
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N 239 (243)
++.+|||+|||+|.++..++..+ |+.+|+|+|+|+.+++.|+++
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~ 72 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER 72 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc
Confidence 45789999999999999999986 788999999999999999764
No 72
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.52 E-value=2.1e-07 Score=79.73 Aligned_cols=45 Identities=27% Similarity=0.274 Sum_probs=39.9
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
++.+|||+|||+|..++.+|+. +.+|+|+|+|++|++.|+++++.
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~ 74 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAA 74 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHH
Confidence 3468999999999999999985 47999999999999999998754
No 73
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.50 E-value=4.7e-07 Score=79.93 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=43.0
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
+++|||+|||+|+.++.+|...+++++|+++|+++++++.|++|++++
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~ 116 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA 116 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 568999999999999999987655789999999999999999998753
No 74
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.48 E-value=2e-07 Score=82.71 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=40.8
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
.+.+|||+|||-|.++..+|+. +++|+|+|+|++++++|+..+.+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e 103 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALE 103 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhh
Confidence 5678999999999999999995 48999999999999999987654
No 75
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.48 E-value=4.2e-07 Score=80.16 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=41.4
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
++.+|||+|||+|.++..++..+ ++.+|+|+|+|+.+++.|+++..
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~ 76 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLP 76 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCC
Confidence 45689999999999999999986 77899999999999999998753
No 76
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.47 E-value=7.4e-07 Score=76.75 Aligned_cols=61 Identities=28% Similarity=0.335 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 178 lLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
...+.+..++ ......++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++...
T Consensus 47 ~~~~~~~~~l-~~~~~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~ 107 (230)
T PRK07580 47 RMRDTVLSWL-PADGDLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPE 107 (230)
T ss_pred HHHHHHHHHH-HhcCCCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHh
Confidence 3445555555 2211224568999999999999999985 35799999999999999998753
No 77
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.46 E-value=5.8e-07 Score=86.10 Aligned_cols=70 Identities=21% Similarity=0.332 Sum_probs=52.3
Q ss_pred CCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 167 ~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
.+.+....++..++..+++ ..++.+|||+|||+|..++.+++..+++++|+|+|+++.+++.+++|++++
T Consensus 229 ~G~~~~qd~~s~lv~~~l~-------~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~ 298 (444)
T PRK14902 229 DGLITIQDESSMLVAPALD-------PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL 298 (444)
T ss_pred CceEEEEChHHHHHHHHhC-------CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 4555554444444433332 123568999999999999999997655689999999999999999999763
No 78
>PRK08317 hypothetical protein; Provisional
Probab=98.45 E-value=9.5e-07 Score=75.43 Aligned_cols=62 Identities=23% Similarity=0.298 Sum_probs=49.3
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (243)
Q Consensus 174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N 239 (243)
|..+.+.+.+...+ ...++.+|||+|||+|.+++.++..++++.+|+|+|+|+.+++.|++|
T Consensus 2 ~~~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 2 PDFRRYRARTFELL----AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred chHHHHHHHHHHHc----CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence 44455566666654 122456899999999999999999865678999999999999999988
No 79
>PLN02244 tocopherol O-methyltransferase
Probab=98.43 E-value=8.5e-07 Score=82.27 Aligned_cols=62 Identities=26% Similarity=0.245 Sum_probs=47.1
Q ss_pred HHHHHHHHhhhc-CCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 179 MVDLVSDVLVRD-NDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 179 Lv~~v~~~l~~~-~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+++.+++++... ....++.+|||+|||+|.++..+++.+ +++|+|+|+|+.+++.|+++++.
T Consensus 101 ~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~ 163 (340)
T PLN02244 101 MIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAA 163 (340)
T ss_pred HHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHh
Confidence 455555554110 011345789999999999999999975 57999999999999999998754
No 80
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.43 E-value=9.4e-07 Score=81.79 Aligned_cols=48 Identities=27% Similarity=0.455 Sum_probs=42.0
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
++.+|||+|||+|.+++.+++..+....|+++|+++++++.|++|+++
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~ 127 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR 127 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 456899999999999999999763345899999999999999999865
No 81
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.43 E-value=6.2e-07 Score=81.80 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=51.1
Q ss_pred CccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHH
Q 026108 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 173 Rp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p-~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
|.+.++|.+.+..+. ..-+ ++.+|||||||+|..+..|+..+ + +.+|+|+|+|+++|+.|++++.
T Consensus 44 r~E~~il~~~~~~ia-~~~~--~~~~iLELGcGtG~~t~~Ll~~l-~~~~~~~~iDiS~~mL~~a~~~l~ 109 (301)
T TIGR03438 44 RTEAAILERHADEIA-AATG--AGCELVELGSGSSRKTRLLLDAL-RQPARYVPIDISADALKESAAALA 109 (301)
T ss_pred HHHHHHHHHHHHHHH-HhhC--CCCeEEecCCCcchhHHHHHHhh-ccCCeEEEEECCHHHHHHHHHHHH
Confidence 567777766665554 2111 34679999999999999999886 4 5799999999999999999864
No 82
>PHA03412 putative methyltransferase; Provisional
Probab=98.43 E-value=2.8e-07 Score=81.99 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=40.0
Q ss_pred CCcEEEeccCCcHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLG--SKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~--p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
+.+|||+|||||+++++++++.. +..+|+|||+++.|++.|++|..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~ 97 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP 97 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc
Confidence 46899999999999999998631 24699999999999999999963
No 83
>PRK06202 hypothetical protein; Provisional
Probab=98.41 E-value=4.3e-07 Score=79.17 Aligned_cols=47 Identities=36% Similarity=0.511 Sum_probs=39.6
Q ss_pred CCCcEEEeccCCcHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVL---GSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~---~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
++.+|||+|||+|.++..+++.. +++.+|+|+|+|+++++.|+++..
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~ 109 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR 109 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc
Confidence 34689999999999999988642 345799999999999999998753
No 84
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.41 E-value=6.1e-07 Score=79.94 Aligned_cols=48 Identities=35% Similarity=0.482 Sum_probs=42.2
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
++.+|||+|||+|..++.+++..++..+|+|+|+|+.+++.|++|++.
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~ 124 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK 124 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH
Confidence 456899999999999988888766667999999999999999999754
No 85
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.41 E-value=1.2e-06 Score=77.63 Aligned_cols=45 Identities=29% Similarity=0.294 Sum_probs=40.0
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
.+.+|||+|||+|.+++.++.. +.+|+|+|+|+++++.|++|++.
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~ 88 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEA 88 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHh
Confidence 3468999999999999999985 37999999999999999998753
No 86
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.41 E-value=6.3e-07 Score=78.15 Aligned_cols=79 Identities=29% Similarity=0.381 Sum_probs=56.2
Q ss_pred cccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (243)
Q Consensus 157 ~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A 236 (243)
.|.+..+.+..+..+..|. ++..+++++ . ..++.+|||+|||||+.+..||+..++...|++||+++..++.|
T Consensus 41 aY~d~~l~i~~~~~is~P~---~~a~~l~~L-~---l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A 113 (209)
T PF01135_consen 41 AYEDRPLPIGCGQTISAPS---MVARMLEAL-D---LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERA 113 (209)
T ss_dssp TTSSS-EEEETTEEE--HH---HHHHHHHHT-T---C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHH
T ss_pred CCCCCCeeecceeechHHH---HHHHHHHHH-h---cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHH
Confidence 3345556556566555543 344555555 2 23567999999999999999999887777899999999999999
Q ss_pred HHHHHh
Q 026108 237 AFNAQR 242 (243)
Q Consensus 237 r~Na~~ 242 (243)
++|.+.
T Consensus 114 ~~~l~~ 119 (209)
T PF01135_consen 114 RRNLAR 119 (209)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 87
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.40 E-value=1.3e-06 Score=75.12 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=40.0
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
++.+|||+|||+|.++..+++.. .+|+++|+++++++.|++|+++
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~ 122 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQ 122 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHH
Confidence 45789999999999999888863 4899999999999999999865
No 88
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.39 E-value=8.1e-07 Score=76.65 Aligned_cols=45 Identities=31% Similarity=0.369 Sum_probs=37.6
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+++++||||||.|..++.||+. +..|+|+|+|+.|++.+++-+++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~ 74 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEE 74 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHH
T ss_pred CCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhh
Confidence 4678999999999999999995 58999999999999998876653
No 89
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.38 E-value=8.2e-07 Score=73.95 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=39.4
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
.+.+|||+|||+|.++..++++ +.+|+|+|+++.+++.+++|+.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~ 56 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFA 56 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhc
Confidence 3468999999999999999986 3699999999999999999874
No 90
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.38 E-value=8.5e-07 Score=77.37 Aligned_cols=41 Identities=12% Similarity=-0.034 Sum_probs=36.3
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
++.+|||+|||.|.-++.||.+ +.+|+|||+|+.|++.|.+
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~ 74 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFA 74 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHH
Confidence 3568999999999999999985 5899999999999998643
No 91
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.35 E-value=1.3e-06 Score=80.87 Aligned_cols=44 Identities=23% Similarity=0.404 Sum_probs=38.9
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
++.+|||+|||+|.++..+|+. +++|+|||+|+++++.|+++++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~ 174 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHAD 174 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHH
Confidence 4568999999999999999863 5799999999999999998764
No 92
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.34 E-value=5.2e-07 Score=81.06 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=38.4
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
+.+|||+|||.|.+++.||+. +++|+|||++++++++|++.+
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~ 131 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHK 131 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhh
Confidence 456999999999999999995 489999999999999999874
No 93
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.34 E-value=8.7e-07 Score=84.14 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=40.6
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
++.+|||+|||+|.+++.++.. ...+|++||+|+.|++.|++|++.|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~N 266 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELN 266 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHc
Confidence 3568999999999999987763 3359999999999999999999864
No 94
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.34 E-value=1.4e-06 Score=78.30 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=38.7
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
++.+|||+|||+|.++..++.+. .+|+|+|+|+++++.+++|.
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~ 84 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETF 84 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhh
Confidence 45689999999999999999973 49999999999999999886
No 95
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.33 E-value=1.6e-06 Score=78.78 Aligned_cols=47 Identities=23% Similarity=0.176 Sum_probs=42.6
Q ss_pred CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 193 ~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
..++.+|||+|||-|.+++.+|+++ +.+|+|+++|++..+.|++.++
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~ 116 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIA 116 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHH
Confidence 4467899999999999999999996 6899999999999999998665
No 96
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.31 E-value=3.3e-06 Score=79.79 Aligned_cols=45 Identities=20% Similarity=0.176 Sum_probs=40.6
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
++.+|||+|||+|.+++.+|+.. +.+|+|+|+|+++++.|++|++
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~ 211 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA 211 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc
Confidence 45789999999999999999874 5799999999999999999874
No 97
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.31 E-value=1.1e-06 Score=77.15 Aligned_cols=44 Identities=34% Similarity=0.351 Sum_probs=40.3
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N 239 (243)
...+|.|||||.|..+-.|++++ |+++|+|+|-|++||+.|+..
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r 73 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR 73 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh
Confidence 34679999999999999999997 999999999999999999763
No 98
>PRK05785 hypothetical protein; Provisional
Probab=98.31 E-value=1e-06 Score=77.23 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=37.7
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N 239 (243)
+.+|||+|||+|.++..+++.+ +.+|+|+|+|+++++.|+++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~ 93 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA 93 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc
Confidence 4689999999999999999874 47999999999999999875
No 99
>PRK04266 fibrillarin; Provisional
Probab=98.30 E-value=1.5e-06 Score=76.56 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=40.4
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
++.+|||+|||+|.+++.++... +..+|+|+|+++.+++.+.++++
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v-~~g~V~avD~~~~ml~~l~~~a~ 117 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIV-EEGVVYAVEFAPRPMRELLEVAE 117 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHhh
Confidence 45689999999999999999986 46799999999999998877765
No 100
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.30 E-value=2e-06 Score=77.25 Aligned_cols=64 Identities=22% Similarity=0.195 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcEEEeccCCcH----HHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHH
Q 026108 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGA----IAIGIARVLG----SKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 177 ElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~----iai~LA~~~~----p~a~V~avDiS~~AL~~Ar~Na 240 (243)
+.+.+.+++.+.......++.+|+|+|||+|- +++.++..+. .+.+|+|+|+|+.||+.|++++
T Consensus 81 ~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 81 EALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred HHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 34555555543121112234689999999996 6777777642 1479999999999999999864
No 101
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.28 E-value=2.4e-06 Score=75.18 Aligned_cols=43 Identities=23% Similarity=0.225 Sum_probs=37.9
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
...+|||+|||+|.++..++.. +.+|+|+|+|+++++.|++|.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhC
Confidence 3467999999999999988864 479999999999999999875
No 102
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.28 E-value=2.1e-06 Score=76.89 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=43.5
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
++.+|||+|||+|..++.+|...+..+.|+|+|+++.+++.+++|++++
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~ 119 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC 119 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc
Confidence 4568999999999999999987644579999999999999999999764
No 103
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.28 E-value=1.8e-06 Score=63.18 Aligned_cols=41 Identities=22% Similarity=0.389 Sum_probs=35.5
Q ss_pred EEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 200 LDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
||+|||+|..+..+++. ++.+|+++|+|+++++.++++...
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~ 41 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN 41 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc
Confidence 79999999999999996 568999999999999999998653
No 104
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.27 E-value=1.8e-06 Score=82.80 Aligned_cols=72 Identities=19% Similarity=0.206 Sum_probs=53.6
Q ss_pred ccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 164 SVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 164 ~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
...++.++....+..++-.++. ..++.+|||+|||+|..++.++...+.+++|+|+|+|+.+++.+++|+++
T Consensus 226 ~~~~G~~~vqd~~s~l~~~~l~-------~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~ 297 (445)
T PRK14904 226 FLKLGLVSVQNPTQALACLLLN-------PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASA 297 (445)
T ss_pred HHhCcEEEEeCHHHHHHHHhcC-------CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH
Confidence 3456666655444444433332 12456899999999999999998764457999999999999999999975
No 105
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.25 E-value=3.6e-06 Score=72.10 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=40.2
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
++.+|||+|||+|.++..++... +..+|+++|+|+.+++.++++.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~ 78 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKL 78 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhc
Confidence 34689999999999999999985 7789999999999999998764
No 106
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.25 E-value=3.2e-06 Score=75.75 Aligned_cols=44 Identities=23% Similarity=0.328 Sum_probs=37.8
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCC---cEEEEEeCCHHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSK---GSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~---a~V~avDiS~~AL~~Ar~Na 240 (243)
..+|||+|||+|.++..+++.+ +. .+|+|+|+|+.|++.|+++.
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~-~~~~~~~v~giD~s~~~l~~A~~~~ 132 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADAL-PEITTMQLFGLDISKVAIKYAAKRY 132 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhc-ccccCCeEEEECCCHHHHHHHHHhC
Confidence 4579999999999999998875 42 47999999999999998763
No 107
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.25 E-value=1.6e-06 Score=87.72 Aligned_cols=47 Identities=19% Similarity=0.093 Sum_probs=41.3
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
++.+|||||||+|.+++.+|+. | ..+|++||+|+.|++.|++|++.|
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~n 584 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALN 584 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHh
Confidence 3568999999999999999985 3 347999999999999999999764
No 108
>PRK04148 hypothetical protein; Provisional
Probab=98.24 E-value=4e-06 Score=68.50 Aligned_cols=43 Identities=23% Similarity=0.208 Sum_probs=37.3
Q ss_pred CCCcEEEeccCCcH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGA-IAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 195 ~~~rVLDLGtGSG~-iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
++.+++|+|||+|. ++..|++. +.+|+|+|+++.+++.|++|.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~~ 59 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKLG 59 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHhC
Confidence 34689999999995 99999864 479999999999999998874
No 109
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.23 E-value=5.6e-06 Score=74.04 Aligned_cols=51 Identities=25% Similarity=0.326 Sum_probs=43.6
Q ss_pred CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 193 ~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
..++.+||+-|||||+++.+||+..+|.++|+..|+.++..+.|++|++++
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~ 88 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH 88 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc
Confidence 346789999999999999999998889999999999999999999999864
No 110
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.23 E-value=4.2e-06 Score=79.14 Aligned_cols=46 Identities=22% Similarity=0.098 Sum_probs=41.3
Q ss_pred CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
.+|||++||+|.+++.+|++. +..+|+++|+++.|++.+++|++.|
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~-~~~~V~a~Din~~Av~~a~~N~~~N 104 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALET-GVEKVTLNDINPDAVELIKKNLELN 104 (382)
T ss_pred CEEEECCCcccHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 479999999999999999985 3359999999999999999999764
No 111
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.22 E-value=7.1e-08 Score=72.79 Aligned_cols=41 Identities=22% Similarity=0.358 Sum_probs=34.3
Q ss_pred EEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 200 LDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
||+|||+|.++..++.++ +..+++|+|+|+.+++.|+++..
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~ 41 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLA 41 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHH
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhh
Confidence 799999999999999986 88999999999999987776554
No 112
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.22 E-value=3.8e-06 Score=79.56 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=42.4
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+..+||||||+|.+.+.+|+.. |+..++|+|+++.+++.|.+++.+
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~ 168 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIEL 168 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHH
Confidence 4579999999999999999986 899999999999999999998865
No 113
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.21 E-value=4.9e-06 Score=75.58 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=41.5
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+..+|||+|||+|.+++.+++++ |+.+|+++|. +.+++.|++|+++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~ 194 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAE 194 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHh
Confidence 34689999999999999999996 8899999998 7999999999864
No 114
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.21 E-value=5.3e-06 Score=76.46 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=47.1
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+..+.+...++.+. . ..++.+|||+|||+|.+.+.++.. +.+|+|+|+++.+++.|++|+++
T Consensus 165 ~l~~~la~~~~~l~-~---~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~ 226 (329)
T TIGR01177 165 SMDPKLARAMVNLA-R---VTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEH 226 (329)
T ss_pred CCCHHHHHHHHHHh-C---CCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHH
Confidence 33444555555443 1 124568999999999999987763 47999999999999999999875
No 115
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.21 E-value=3.4e-06 Score=80.57 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=43.2
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
++.+|||+|||+|..++.++... ++.+|+|+|+|+.+++.+++|++++
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~ 291 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRL 291 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 46789999999999999999975 5579999999999999999999763
No 116
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.21 E-value=6.9e-06 Score=71.43 Aligned_cols=62 Identities=26% Similarity=0.419 Sum_probs=50.9
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
|++..+...+.... +.++||++|||+|+-++.+|..++++++|+.+|++++..++|++|+++
T Consensus 31 ~~~g~lL~~l~~~~-------~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ 92 (205)
T PF01596_consen 31 PETGQLLQMLVRLT-------RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRK 92 (205)
T ss_dssp HHHHHHHHHHHHHH-------T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-------CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHh
Confidence 45555556665544 346899999999999999999885679999999999999999999875
No 117
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.20 E-value=3.5e-06 Score=73.77 Aligned_cols=40 Identities=15% Similarity=0.045 Sum_probs=35.8
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar 237 (243)
++.+|||+|||.|.-++.||.+ +.+|+|||+|+.|++.+.
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFF 76 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHH
Confidence 3568999999999999999985 589999999999999864
No 118
>PRK06922 hypothetical protein; Provisional
Probab=98.20 E-value=4.2e-06 Score=83.73 Aligned_cols=46 Identities=20% Similarity=0.243 Sum_probs=41.7
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
++.+|||+|||+|..+..++..+ |+.+|+|+|+|+.+++.|++|+.
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~ 463 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQ 463 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhh
Confidence 45789999999999999999886 88999999999999999998864
No 119
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=2.2e-06 Score=71.21 Aligned_cols=49 Identities=24% Similarity=0.420 Sum_probs=42.0
Q ss_pred CCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 192 ~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
++..++.++|||||.|-+.++.+. + ....|+|+||+++||+.+++|++.
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~sm-~-~~e~vlGfDIdpeALEIf~rNaeE 93 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSIAFSM-P-KNESVLGFDIDPEALEIFTRNAEE 93 (185)
T ss_pred ccccCcchhhhcCchhhhHHHhhc-C-CCceEEeeecCHHHHHHHhhchHH
Confidence 345678899999999999987776 3 456999999999999999999975
No 120
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.18 E-value=4.3e-06 Score=80.15 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=43.5
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
++.+|||+|||+|..++.+|...+++++|+|+|+|+.+++.+++|+++
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r 284 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR 284 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 456899999999999999999765568999999999999999999876
No 121
>PLN02476 O-methyltransferase
Probab=98.18 E-value=7e-06 Score=74.61 Aligned_cols=63 Identities=17% Similarity=0.315 Sum_probs=51.5
Q ss_pred CccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 173 Rp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
.|++..+...+.... +.++|||+|||+|..++.+|...+++++|+++|+++++.+.|++|+++
T Consensus 103 ~~~~g~lL~~L~~~~-------~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~ 165 (278)
T PLN02476 103 SPDQAQLLAMLVQIL-------GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYEL 165 (278)
T ss_pred CHHHHHHHHHHHHhc-------CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 455555555555543 356899999999999999999775678999999999999999999975
No 122
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.18 E-value=5.8e-06 Score=74.05 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=39.7
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
++.+|||+|||+|..+..++..+ +.+|+|+|+|+.+++.|+++..
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~ 96 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNS 96 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcC
Confidence 45689999999999999998864 5799999999999999998753
No 123
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=3.2e-06 Score=75.59 Aligned_cols=49 Identities=27% Similarity=0.348 Sum_probs=45.7
Q ss_pred CCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 194 ~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
.++.+|+|.|||||+++..||...++.++|+.+|+.++..+.|++|++.
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~ 141 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE 141 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH
Confidence 3578999999999999999998888889999999999999999999975
No 124
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.16 E-value=9.6e-06 Score=69.64 Aligned_cols=47 Identities=26% Similarity=0.452 Sum_probs=41.3
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
++.+|||+|||+|..+..++...+++.+|+++|+++.+++.|++|+.
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 97 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLR 97 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhc
Confidence 35689999999999999999985226899999999999999999864
No 125
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.16 E-value=6.4e-06 Score=78.59 Aligned_cols=48 Identities=15% Similarity=0.218 Sum_probs=43.4
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
++.+|||+|||+|..++.++... ++++|+|+|+++.+++.+++|++++
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~-~~~~v~a~D~~~~~l~~~~~n~~r~ 285 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELA-PQAQVVALDIHEHRLKRVYENLKRL 285 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHHc
Confidence 45689999999999999999986 4689999999999999999999863
No 126
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.15 E-value=7.2e-06 Score=73.17 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=39.3
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
++.+|||+|||+|.+++.+++. ..+|+|+|+++.+++.+++|++
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~ 72 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEI 72 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhc
Confidence 4568999999999999999986 2699999999999999999864
No 127
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.14 E-value=6.7e-06 Score=71.37 Aligned_cols=75 Identities=27% Similarity=0.342 Sum_probs=51.8
Q ss_pred ccccccC--CCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108 160 DLVLSVE--EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (243)
Q Consensus 160 ~l~f~v~--~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar 237 (243)
|..|.+| .-.|.||-.+|.. .+.+.+ .++..|+|++||-|.+++.+|+. +....|+|+|++|.|++..+
T Consensus 72 G~~f~~D~~kvyfs~rl~~Er~--Ri~~~v------~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~ 142 (200)
T PF02475_consen 72 GIRFKVDLSKVYFSPRLSTERR--RIANLV------KPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLK 142 (200)
T ss_dssp TEEEEEETTTS---GGGHHHHH--HHHTC--------TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHH
T ss_pred CEEEEEccceEEEccccHHHHH--HHHhcC------CcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHH
Confidence 5666654 4456688666653 333333 24568999999999999999995 35679999999999999999
Q ss_pred HHHHhC
Q 026108 238 FNAQRI 243 (243)
Q Consensus 238 ~Na~~~ 243 (243)
+|++.|
T Consensus 143 ~Ni~lN 148 (200)
T PF02475_consen 143 ENIRLN 148 (200)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 999875
No 128
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.14 E-value=1.5e-05 Score=72.21 Aligned_cols=48 Identities=21% Similarity=0.160 Sum_probs=38.1
Q ss_pred CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 193 ~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
..++.+|||||||.|.+++.+|+++ +++|+|+.+|++-.+.|++.+++
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~ 107 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIRE 107 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHC
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHh
Confidence 4457899999999999999999997 58999999999999999988764
No 129
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.13 E-value=7.1e-06 Score=69.13 Aligned_cols=68 Identities=16% Similarity=0.255 Sum_probs=46.1
Q ss_pred ccHHHHHHHHHHHhhh--cCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 174 PETELMVDLVSDVLVR--DNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 174 p~TElLv~~v~~~l~~--~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
|-+..|.+++...... .....++.+||+||||+|..|+.+|+.. ...+|+++|.++ +++..+.|++.|
T Consensus 22 ~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N 91 (173)
T PF10294_consen 22 PAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELN 91 (173)
T ss_dssp -HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT
T ss_pred chHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhc
Confidence 4555666666553100 1123356799999999999999999974 457999999999 999999999875
No 130
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.11 E-value=5.5e-06 Score=71.22 Aligned_cols=64 Identities=30% Similarity=0.425 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhhcCC-CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 177 ELMVDLVSDVLVRDND-GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 177 ElLv~~v~~~l~~~~~-~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+.+++++.+.+. ... .....+|||||||.|.+...|+++ +=....+|||.|+.|+++|+.-+++
T Consensus 49 ~riv~wl~d~~~-~~rv~~~A~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~ 113 (227)
T KOG1271|consen 49 ERIVDWLKDLIV-ISRVSKQADRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAER 113 (227)
T ss_pred HHHHHHHHhhhh-hhhhcccccceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHh
Confidence 345666665542 111 112348999999999999999997 3445699999999999998877664
No 131
>PRK04457 spermidine synthase; Provisional
Probab=98.10 E-value=5.2e-06 Score=74.54 Aligned_cols=45 Identities=29% Similarity=0.349 Sum_probs=41.4
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
+.+|||||||+|.++..+++.+ |+.+|++||+++++++.|+++..
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~ 111 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFE 111 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcC
Confidence 4679999999999999999986 88999999999999999999864
No 132
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.09 E-value=1.1e-05 Score=73.84 Aligned_cols=45 Identities=18% Similarity=0.354 Sum_probs=39.8
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
++.+|||+|||+|.++..++.. ..+|+|+|+|+++++.+++|++.
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~ 80 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQN 80 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHh
Confidence 4568999999999999999886 26899999999999999998753
No 133
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.08 E-value=8.2e-06 Score=78.09 Aligned_cols=49 Identities=29% Similarity=0.333 Sum_probs=43.6
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
++.+|||+|||+|..++.++...++.++|+|+|+++.+++.+++|++++
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~ 300 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL 300 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc
Confidence 4578999999999999999997645579999999999999999999763
No 134
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.07 E-value=1.7e-05 Score=67.30 Aligned_cols=66 Identities=24% Similarity=0.208 Sum_probs=48.3
Q ss_pred CCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcE---------EEEEeCCHHHHHHHHHHHHh
Q 026108 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGS---------IIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 172 PRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~---------V~avDiS~~AL~~Ar~Na~~ 242 (243)
|-+..+.+...++... . ..++..++|-.||||.|.|..|... .+.. ++|+|+++++++.|++|++.
T Consensus 9 ~a~L~~~lA~~ll~la-~---~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ 83 (179)
T PF01170_consen 9 PAPLRPTLAAALLNLA-G---WRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKA 83 (179)
T ss_dssp STSS-HHHHHHHHHHT-T-----TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh-C---CCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHh
Confidence 3455556666666554 1 1235679999999999999999875 5555 89999999999999999975
No 135
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.03 E-value=2.5e-05 Score=72.16 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=35.3
Q ss_pred CCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (243)
Q Consensus 194 ~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar 237 (243)
.++++|||+|||+|.+++.++.. ++ ..|+|+|.|+.++..++
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~-g~-~~V~GiD~S~~~l~q~~ 162 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGA-GA-KLVVGIDPSQLFLCQFE 162 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHH
Confidence 35678999999999999999987 45 47999999999886544
No 136
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.4e-05 Score=68.39 Aligned_cols=75 Identities=25% Similarity=0.334 Sum_probs=56.6
Q ss_pred ccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108 158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (243)
Q Consensus 158 f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar 237 (243)
|.+..+-+..+..|-.|.. +-.+.+++ ...++.+||++|||||+.+..||+.. .+|+.+|+.++..+.|+
T Consensus 42 Y~d~~lpi~~gqtis~P~~---vA~m~~~L----~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~ 111 (209)
T COG2518 42 YEDRALPIGCGQTISAPHM---VARMLQLL----ELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQAR 111 (209)
T ss_pred ccCCcccCCCCceecCcHH---HHHHHHHh----CCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHH
Confidence 3455666667777755543 33344444 12256789999999999999999974 49999999999999999
Q ss_pred HHHHh
Q 026108 238 FNAQR 242 (243)
Q Consensus 238 ~Na~~ 242 (243)
+|.+.
T Consensus 112 ~~L~~ 116 (209)
T COG2518 112 RNLET 116 (209)
T ss_pred HHHHH
Confidence 99875
No 137
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.01 E-value=2e-05 Score=69.97 Aligned_cols=44 Identities=16% Similarity=0.313 Sum_probs=38.9
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
++.+|||+|||+|.++..+++.. .+|+++|+++++++.+++|..
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhC
Confidence 45689999999999999999974 469999999999999998863
No 138
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.01 E-value=2.2e-05 Score=72.47 Aligned_cols=42 Identities=24% Similarity=0.308 Sum_probs=35.4
Q ss_pred CCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (243)
Q Consensus 194 ~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar 237 (243)
.++++|||+|||+|.+++.++.. ++ ..|+|+|.|+.++..++
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~-g~-~~v~GiDpS~~ml~q~~ 161 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGH-GA-KSLVGIDPTVLFLCQFE 161 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHH
Confidence 45678999999999999999886 34 48999999999987654
No 139
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.96 E-value=3.5e-05 Score=67.85 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=52.3
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
|++-.+...+.... ..++||++||+.|.-++.+|..++.+++++.+|++++..+.|++|.++
T Consensus 45 ~e~g~~L~~L~~~~-------~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ 106 (219)
T COG4122 45 PETGALLRLLARLS-------GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAE 106 (219)
T ss_pred hhHHHHHHHHHHhc-------CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 66666666665533 356899999999999999999984388999999999999999999875
No 140
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.96 E-value=5.9e-05 Score=68.85 Aligned_cols=47 Identities=21% Similarity=0.173 Sum_probs=39.0
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
++++|||++|-||.+++.++.. |. .+|+.||.|..|++.|++|++.|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA-~~v~~VD~S~~al~~a~~N~~lN 169 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GA-KEVVSVDSSKRALEWAKENAALN 169 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TE-SEEEEEES-HHHHHHHHHHHHHT
T ss_pred CCCceEEecCCCCHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHc
Confidence 4578999999999999998874 32 48999999999999999999865
No 141
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.95 E-value=4e-05 Score=65.80 Aligned_cols=45 Identities=22% Similarity=0.345 Sum_probs=39.1
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
.+.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++|+..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~ 89 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKK 89 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHH
Confidence 3568999999999999999875 35799999999999999998753
No 142
>PLN03075 nicotianamine synthase; Provisional
Probab=97.93 E-value=4.4e-05 Score=69.99 Aligned_cols=47 Identities=21% Similarity=0.140 Sum_probs=37.6
Q ss_pred CCCcEEEeccCCcHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAI-AIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 195 ~~~rVLDLGtGSG~i-ai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
.+.+|+|+|||.|-+ ++.++....|+++++++|+|++|++.|+++++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~ 170 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVS 170 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhh
Confidence 457899999997733 45444333488999999999999999999984
No 143
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.93 E-value=2.8e-05 Score=71.32 Aligned_cols=59 Identities=37% Similarity=0.465 Sum_probs=47.9
Q ss_pred HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
+.+.+++.+ . ..++..++|.+||.|..+..+++.++++++|+|+|++++|++.|+++++
T Consensus 7 ll~Evl~~L-~---~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~ 65 (296)
T PRK00050 7 LLDEVVDAL-A---IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK 65 (296)
T ss_pred cHHHHHHhh-C---CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc
Confidence 556666665 1 2245689999999999999999987447899999999999999998763
No 144
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.91 E-value=1.5e-05 Score=70.36 Aligned_cols=41 Identities=29% Similarity=0.423 Sum_probs=36.2
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
+..-|||+|||||..+-.|.. ++...+|+|||+.||++|.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~---~Gh~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSD---SGHQWIGVDISPSMLEQAVE 90 (270)
T ss_pred CCcEEEEeccCCCcchheecc---CCceEEeecCCHHHHHHHHH
Confidence 466899999999999988865 45899999999999999985
No 145
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.90 E-value=5e-05 Score=64.49 Aligned_cols=45 Identities=24% Similarity=0.401 Sum_probs=40.2
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~-a~V~avDiS~~AL~~Ar~Na 240 (243)
++.+|||+|||+|.++..+++.. +. .+++++|+++.+++.+++|.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~~~~iD~~~~~~~~~~~~~ 84 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA-PDRGKVTGVDFSSEMLEVAKKKS 84 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc-CCCceEEEEECCHHHHHHHHHHh
Confidence 45789999999999999999986 54 69999999999999999875
No 146
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.89 E-value=4.5e-05 Score=61.27 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=33.1
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~ 235 (243)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK 59 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh
Confidence 4678999999999999999775 3599999999999865
No 147
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.89 E-value=2.1e-05 Score=73.09 Aligned_cols=47 Identities=23% Similarity=0.387 Sum_probs=40.3
Q ss_pred CCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 194 ~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
.+++.|||+|||+|.+++..|+. |+ .+|+|||.|.-| +.|++.++.|
T Consensus 59 f~dK~VlDVGcGtGILS~F~akA-GA-~~V~aVe~S~ia-~~a~~iv~~N 105 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKA-GA-RKVYAVEASSIA-DFARKIVKDN 105 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHh-Cc-ceEEEEechHHH-HHHHHHHHhc
Confidence 45678999999999999999997 54 799999999877 8888877654
No 148
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.88 E-value=4.7e-05 Score=66.02 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=39.1
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
++.+|||+|||+|.++..+++. +.+|+++|+++.+++.|++|+.
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~ 91 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHAL 91 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHH
Confidence 4568999999999999999875 3689999999999999999865
No 149
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.87 E-value=4.2e-05 Score=68.83 Aligned_cols=59 Identities=27% Similarity=0.350 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCC------cEEEEEeCCHHHHHHHHHHHH
Q 026108 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK------GSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 178 lLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~------a~V~avDiS~~AL~~Ar~Na~ 241 (243)
++-+..+.++ .+.++.++||+|||||-|+..+.++. .. .+|+.+|||+++|+++++.++
T Consensus 87 lWKd~~v~~L----~p~~~m~~lDvaGGTGDiaFril~~v-~s~~~~~~~~V~v~Dinp~mL~vgkqRa~ 151 (296)
T KOG1540|consen 87 LWKDMFVSKL----GPGKGMKVLDVAGGTGDIAFRILRHV-KSQFGDRESKVTVLDINPHMLAVGKQRAK 151 (296)
T ss_pred HHHHHhhhcc----CCCCCCeEEEecCCcchhHHHHHHhh-ccccCCCCceEEEEeCCHHHHHHHHHHHh
Confidence 3444455554 23356889999999999999999987 44 799999999999999998874
No 150
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.87 E-value=7.1e-05 Score=60.80 Aligned_cols=48 Identities=29% Similarity=0.369 Sum_probs=40.7
Q ss_pred CCCcEEEeccCCcHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVL---GSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~---~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+...|+|+|||-|.++..|+..+ .++.+|+|||.++..++.|++.+++
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 75 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQK 75 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHH
Confidence 45679999999999999999922 2578999999999999999887654
No 151
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.85 E-value=2.3e-05 Score=70.02 Aligned_cols=46 Identities=26% Similarity=0.417 Sum_probs=41.8
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+..+||+||-+|.+++.+|+.|++ ..|+|+||++..++.|++|++.
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccc
Confidence 456999999999999999999965 6899999999999999999764
No 152
>PTZ00146 fibrillarin; Provisional
Probab=97.79 E-value=8.4e-05 Score=68.06 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=45.7
Q ss_pred CCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHH----HHHHHH
Q 026108 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL----AAAVAA 237 (243)
Q Consensus 167 ~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~----AL~~Ar 237 (243)
.+++.|.. --|...++.-+ ......++.+|||||||+|..+..+|...++...|+|||+|++ +++.|+
T Consensus 107 yR~w~p~r--SKlaa~i~~g~-~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak 178 (293)
T PTZ00146 107 YRVWNPFR--SKLAAAIIGGV-ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK 178 (293)
T ss_pred eeeeCCcc--cHHHHHHHCCc-ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh
Confidence 45666642 12333333322 1122234568999999999999999998766679999999986 445554
No 153
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.79 E-value=4.2e-05 Score=74.76 Aligned_cols=72 Identities=17% Similarity=0.145 Sum_probs=53.8
Q ss_pred cccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCC--------CcEEEEEeCCHHHHHHHHHHH
Q 026108 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS--------KGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 169 vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p--------~a~V~avDiS~~AL~~Ar~Na 240 (243)
.+-|...++.+++.+.... .........+|||.|||+|++.++++.++ + ...++|+||++.++..|+.|+
T Consensus 6 fyTP~~ia~~mv~~~~~~~-~~~~~~~~~~ilDP~cGsG~fl~~~~~~~-~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 6 FFTPPDIAKAMVANLVNEI-GKNDKSTKTKIIDPCCGDGRLIAALLKKN-EEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cCCcHHHHHHHHHHHhhhc-chhhcccceEEEeCCCCccHHHHHHHHHH-HhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 4567778888887765533 11000134589999999999999999876 3 257999999999999999997
Q ss_pred Hh
Q 026108 241 QR 242 (243)
Q Consensus 241 ~~ 242 (243)
..
T Consensus 84 ~~ 85 (524)
T TIGR02987 84 GE 85 (524)
T ss_pred hh
Confidence 54
No 154
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.79 E-value=2.8e-05 Score=67.45 Aligned_cols=36 Identities=33% Similarity=0.467 Sum_probs=31.4
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP 230 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~ 230 (243)
++.+|||||||+|.++..+++..++..+|+|||+++
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 356899999999999999999865567999999986
No 155
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.78 E-value=9.5e-05 Score=66.14 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=50.8
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
|++-.+...+.... +.++||++||+.|+-++.+|..++++++|+.+|++++..+.|++|.++
T Consensus 65 ~~~g~lL~~l~~~~-------~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ 126 (247)
T PLN02589 65 ADEGQFLNMLLKLI-------NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQK 126 (247)
T ss_pred HHHHHHHHHHHHHh-------CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 45555555555543 346799999999999999999876688999999999999999999875
No 156
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.76 E-value=0.00011 Score=69.46 Aligned_cols=46 Identities=26% Similarity=0.173 Sum_probs=41.1
Q ss_pred CcEEEeccCCcHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhC
Q 026108 197 GFWVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 197 ~rVLDLGtGSG~iai~LA~~~~p~-a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
.+|||+.||||..|+.++++. ++ .+|+++|++++|++.+++|++.|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~-~ga~~Vv~nD~n~~Av~~i~~N~~~N 92 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEI-EGVREVFANDINPKAVESIKNNVEYN 92 (374)
T ss_pred CEEEECCCchhHHHHHHHhhC-CCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 479999999999999999974 32 58999999999999999999764
No 157
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.75 E-value=6.2e-05 Score=70.25 Aligned_cols=74 Identities=27% Similarity=0.347 Sum_probs=56.5
Q ss_pred ccccccC--CCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108 160 DLVLSVE--EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (243)
Q Consensus 160 ~l~f~v~--~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar 237 (243)
|..|.+| .-.|.||-.+|-. .+.+.. .++.+|+|+.+|-|.+++.+|+. + ...|+|+|++|.|++..+
T Consensus 159 G~~f~vD~~Kv~Fsprl~~ER~--Rva~~v------~~GE~V~DmFAGVGpfsi~~Ak~-g-~~~V~A~diNP~A~~~L~ 228 (341)
T COG2520 159 GCRFKVDVAKVYFSPRLSTERA--RVAELV------KEGETVLDMFAGVGPFSIPIAKK-G-RPKVYAIDINPDAVEYLK 228 (341)
T ss_pred CEEEEEchHHeEECCCchHHHH--HHHhhh------cCCCEEEEccCCcccchhhhhhc-C-CceEEEEecCHHHHHHHH
Confidence 5666665 4457788666653 233332 13568999999999999999996 3 345999999999999999
Q ss_pred HHHHhC
Q 026108 238 FNAQRI 243 (243)
Q Consensus 238 ~Na~~~ 243 (243)
+|++.|
T Consensus 229 eNi~LN 234 (341)
T COG2520 229 ENIRLN 234 (341)
T ss_pred HHHHhc
Confidence 999876
No 158
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.75 E-value=7.4e-05 Score=53.73 Aligned_cols=40 Identities=33% Similarity=0.517 Sum_probs=35.2
Q ss_pred cEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (243)
Q Consensus 198 rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N 239 (243)
+++|+|||+|.++..++. . ...+++++|+++.+++.++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~ 40 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKA 40 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHH
Confidence 489999999999999988 3 568999999999999998843
No 159
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.73 E-value=4.2e-05 Score=64.64 Aligned_cols=38 Identities=34% Similarity=0.555 Sum_probs=32.3
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLA 232 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~A 232 (243)
++.+|||+|||+|.++..++..+.+..+|+|+|+|+.+
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~ 69 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK 69 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence 46789999999999999998876455789999999853
No 160
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.69 E-value=9.6e-05 Score=71.03 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=36.0
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.+++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~ 77 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNES 77 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHH
Confidence 34689999999999999999863 599999999999988764
No 161
>PRK00811 spermidine synthase; Provisional
Probab=97.68 E-value=0.00011 Score=66.54 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=39.9
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
++.+|||||||+|.++..++++. ...+|++||+++++++.|+++..
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~ 121 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLP 121 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhH
Confidence 35689999999999999998863 44699999999999999999864
No 162
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.67 E-value=0.0001 Score=65.15 Aligned_cols=41 Identities=10% Similarity=-0.054 Sum_probs=36.8
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
++.+||+.|||.|.-++.||.. +.+|+|+|+|+.|++.+.+
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFS 83 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHH
Confidence 3568999999999999999985 4799999999999999865
No 163
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.65 E-value=3.7e-05 Score=68.35 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=36.5
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N 239 (243)
-.++||||||||-.+..+-... ...+|||||+.|++.|.+.
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK 166 (287)
T ss_pred cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc
Confidence 4689999999999999998764 6999999999999999764
No 164
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.63 E-value=0.00015 Score=68.93 Aligned_cols=47 Identities=23% Similarity=0.164 Sum_probs=41.8
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
++++|||++|-||.+++.+|.. |. .+|+.||+|..||++|++|++.|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g-GA-~~vt~VD~S~~al~~a~~N~~LN 263 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-GA-SEVTSVDLSKRALEWARENAELN 263 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc-CC-CceEEEeccHHHHHHHHHHHHhc
Confidence 4778999999999999999984 32 39999999999999999999865
No 165
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.59 E-value=0.00018 Score=62.00 Aligned_cols=44 Identities=20% Similarity=0.362 Sum_probs=38.7
Q ss_pred cEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 198 rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
.+||||||.|-..+.+|... |+..++|+|++...+..|.+.+.+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~ 63 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEK 63 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHH
T ss_pred eEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHh
Confidence 69999999999999999996 999999999999999999887754
No 166
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.56 E-value=9.6e-05 Score=64.11 Aligned_cols=44 Identities=23% Similarity=0.230 Sum_probs=36.5
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
-.++||+|||.|.++..||.+. .+++++|+|+.||+.|++..+.
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~ 87 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG 87 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT
T ss_pred cceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC
Confidence 3579999999999999999985 6999999999999999987653
No 167
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.53 E-value=0.00016 Score=63.94 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=35.4
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHH-HHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV-AAFN 239 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~-Ar~N 239 (243)
++.++||+|||+|.++..+++. | ..+|+|||+++.++.. .++|
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~~l~~~ 118 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAEKLRQD 118 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHhcC
Confidence 5668999999999999999986 3 3699999999987765 4443
No 168
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.48 E-value=0.00021 Score=63.57 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=61.0
Q ss_pred cccCCCcccCC-ccHHHHHHHHHHHhhhcCCCC--CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108 163 LSVEEGVFIPR-PETELMVDLVSDVLVRDNDGL--RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (243)
Q Consensus 163 f~v~~~vliPR-p~TElLv~~v~~~l~~~~~~~--~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N 239 (243)
..+.++.|.|- |.-.-.+..+.+++...++.. +..++||+|+|.-||--.+..+. -++..+|.||++.+++.|+.|
T Consensus 43 wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl~sA~~i 121 (292)
T COG3129 43 WDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSLSSAKAI 121 (292)
T ss_pred ecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCccccccccccee-ecceeecCccCHHHHHHHHHH
Confidence 44577888885 777777777777774333322 34589999999999976666553 468999999999999999999
Q ss_pred HHhC
Q 026108 240 AQRI 243 (243)
Q Consensus 240 a~~~ 243 (243)
+..|
T Consensus 122 i~~N 125 (292)
T COG3129 122 ISAN 125 (292)
T ss_pred HHcC
Confidence 8764
No 169
>PLN02366 spermidine synthase
Probab=97.46 E-value=0.00088 Score=61.76 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=39.7
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
.+++||+||||.|.++..+++. .+..+|+.||++++.+++|+++..
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~ 136 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFP 136 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhh
Confidence 3578999999999999999986 234699999999999999999753
No 170
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.45 E-value=0.00044 Score=62.12 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=39.1
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
+.+|||||||+|.++..+++.. +..+|+++|+++++++.|+++..
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~ 117 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLP 117 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhH
Confidence 4589999999999999888763 45799999999999999999763
No 171
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.45 E-value=9.8e-05 Score=65.86 Aligned_cols=38 Identities=37% Similarity=0.440 Sum_probs=34.7
Q ss_pred cEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 198 rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
.++|+|||+|--++.+|..+ .+|+|+|+|+.+|++|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k 73 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKK 73 (261)
T ss_pred eEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhc
Confidence 69999999998888888875 699999999999999986
No 172
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.42 E-value=0.0001 Score=63.96 Aligned_cols=50 Identities=34% Similarity=0.569 Sum_probs=43.7
Q ss_pred CCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 192 ~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
+...+++|||+|+|||..+|+.|+. |. ..|++.|+.+..+...+.|++.|
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~a-GA-~~v~a~d~~P~~~~ai~lNa~an 125 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARA-GA-AEVVAADIDPWLEQAIRLNAAAN 125 (218)
T ss_pred cccccceeeecccccChHHHHHHHh-hh-HHHHhcCCChHHHHHhhcchhhc
Confidence 3446789999999999999999996 44 79999999999999999998865
No 173
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.36 E-value=0.00056 Score=62.03 Aligned_cols=64 Identities=25% Similarity=0.404 Sum_probs=44.2
Q ss_pred ccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHh------CCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 170 FIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL------GSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 170 liPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~------~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
+.|+..++++++.+. ..++.+|+|-+||+|.+.+.+.+.+ ....+++|+|+++.++.+|+.|+.
T Consensus 29 ~TP~~i~~l~~~~~~--------~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~ 98 (311)
T PF02384_consen 29 YTPREIVDLMVKLLN--------PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL 98 (311)
T ss_dssp ---HHHHHHHHHHHT--------T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH
T ss_pred ehHHHHHHHHHhhhh--------ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh
Confidence 456665555555441 1134579999999999999888742 156899999999999999999874
No 174
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.34 E-value=0.00071 Score=68.71 Aligned_cols=69 Identities=20% Similarity=0.141 Sum_probs=51.5
Q ss_pred CCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhC---------------------------------
Q 026108 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG--------------------------------- 218 (243)
Q Consensus 172 PRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~--------------------------------- 218 (243)
|-|..|.|...++... ... ..+..++|.+||||.|.|..|....
T Consensus 170 ~Apl~etlAaa~l~~a-~w~--~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~ 246 (702)
T PRK11783 170 EAPLKENLAAAILLRS-GWP--QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQE 246 (702)
T ss_pred CCCCcHHHHHHHHHHc-CCC--CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHH
Confidence 3477788888777643 211 1346799999999999999887310
Q ss_pred --------CCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 219 --------SKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 219 --------p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
...+++|+|+++.|++.|++|++.+
T Consensus 247 ~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~ 279 (702)
T PRK11783 247 RARAGLAELPSKFYGSDIDPRVIQAARKNARRA 279 (702)
T ss_pred HHhhcccccCceEEEEECCHHHHHHHHHHHHHc
Confidence 1137999999999999999999763
No 175
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.32 E-value=0.00054 Score=63.10 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=34.1
Q ss_pred CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 026108 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (243)
Q Consensus 193 ~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~ 235 (243)
+.++++|||+|||+|..+..++.+ |+ ..|+|+|-++..+..
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~-GA-~~ViGiDP~~lf~~Q 153 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGR-GA-KSVIGIDPSPLFYLQ 153 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhc-CC-CEEEEECCChHHHHH
Confidence 456789999999999999999987 45 589999998765543
No 176
>PRK03612 spermidine synthase; Provisional
Probab=97.31 E-value=0.00034 Score=68.65 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=38.4
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N 239 (243)
++++|||+|||+|.++..++++ ++..+|++||+++++++.|++|
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~ 340 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTS 340 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhC
Confidence 4568999999999999998875 2337999999999999999995
No 177
>PRK01581 speE spermidine synthase; Validated
Probab=97.25 E-value=0.00079 Score=63.55 Aligned_cols=43 Identities=19% Similarity=0.095 Sum_probs=37.3
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
.+.+||++|||.|..+..+.+. ++..+|++||++++++++|++
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARN 192 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHh
Confidence 3568999999999988888875 355799999999999999996
No 178
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.25 E-value=0.00046 Score=60.53 Aligned_cols=40 Identities=28% Similarity=0.305 Sum_probs=35.1
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar 237 (243)
.+.+||+.|||.|.-.+.||.+ +.+|+|+|+|+.|++.|.
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~ 76 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAF 76 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHH
T ss_pred CCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHH
Confidence 3568999999999999999985 489999999999999984
No 179
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.00059 Score=63.76 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=41.4
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
++..|||=.||||.|.|.+... +++|+|+|++..+++-|+.|.+.+
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y 242 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYY 242 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhh
Confidence 4568999999999999998874 589999999999999999999764
No 180
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.16 E-value=0.0012 Score=57.44 Aligned_cols=47 Identities=19% Similarity=0.283 Sum_probs=36.1
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
++..++|||||.|...+.+|... +-.+++|||+.+...+.|+.+.++
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~ 88 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEE 88 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHH
Confidence 45689999999999999998876 434699999999999999887653
No 181
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.12 E-value=0.0009 Score=58.98 Aligned_cols=47 Identities=19% Similarity=0.105 Sum_probs=35.3
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHh
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~-a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+-++.|-|||+|.+.--++...+.. ..|+|.||++++|++|++|...
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence 4579999999999976666543222 4899999999999999999753
No 182
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.10 E-value=0.0012 Score=58.54 Aligned_cols=63 Identities=27% Similarity=0.307 Sum_probs=51.0
Q ss_pred cCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 171 iPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
.|.++++.+...+.... ....|+|..||.|--+|-.|..+ ..|++|||+|.-+..|++|++-|
T Consensus 77 Tpe~ia~~iA~~v~~~~-------~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiY 139 (263)
T KOG2730|consen 77 TPEKIAEHIANRVVACM-------NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVY 139 (263)
T ss_pred ccHHHHHHHHHHHHHhc-------CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceee
Confidence 35677888877776543 22459999999999999999874 69999999999999999999753
No 183
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.94 E-value=0.0039 Score=56.36 Aligned_cols=61 Identities=23% Similarity=0.170 Sum_probs=43.5
Q ss_pred HHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 180 VDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 180 v~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
+..++.-+....+...+.+|||+|+|.|.-..++...++.-.+++++|.|+.++++++.=+
T Consensus 18 ~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~ 78 (274)
T PF09243_consen 18 VYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLL 78 (274)
T ss_pred HHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHH
Confidence 3344443422223445678999999999987777776633458999999999999988744
No 184
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.88 E-value=0.0029 Score=61.59 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=44.3
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
++.+|||+|+|.|.=+..+|..++....|+++|+++.-++..++|++++
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~ 161 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC 161 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 5678999999999999999998755679999999999999999999863
No 185
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.003 Score=55.54 Aligned_cols=48 Identities=23% Similarity=0.461 Sum_probs=40.6
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~-a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
++.++||+|+|||.++..+|...++. ..++|||.-++.++.+++|+.+
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k 130 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDK 130 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHh
Confidence 46789999999999999888655443 3459999999999999999875
No 186
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.81 E-value=0.0025 Score=56.41 Aligned_cols=45 Identities=13% Similarity=0.275 Sum_probs=40.4
Q ss_pred CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
..+||||||.|...+.+|++. |+..++|||+....+..|.+-+.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~ 94 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKE 94 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHH
Confidence 469999999999999999995 999999999999999888776654
No 187
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=96.73 E-value=0.0042 Score=60.13 Aligned_cols=44 Identities=25% Similarity=0.367 Sum_probs=32.7
Q ss_pred CCcEEEeccCCcHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARV---LGSKGSIIAVDLNPLAAAVAAFN 239 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~---~~p~a~V~avDiS~~AL~~Ar~N 239 (243)
+..|+|+|||+|.+....++. .+...+|+|||.|+.|+...++.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~ 233 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKR 233 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHH
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHH
Confidence 467999999999998776653 11236999999999999776554
No 188
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.70 E-value=0.0018 Score=56.27 Aligned_cols=42 Identities=31% Similarity=0.512 Sum_probs=37.5
Q ss_pred CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
..+.|||+|||.++...|+. . -+|+|++.+|.-.++|.+|+.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A-~rViAiE~dPk~a~~a~eN~~ 75 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--A-ERVIAIEKDPKRARLAEENLH 75 (252)
T ss_pred hceeeccCCcchHHHHHHhh--h-ceEEEEecCcHHHHHhhhcCC
Confidence 45899999999999999886 3 599999999999999999963
No 189
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.68 E-value=0.0035 Score=58.76 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=37.3
Q ss_pred CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 193 ~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
+..++.|||+|||||+++...|.. |. .+|++||.|. +.+.|++-++
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqA-GA-~~vYAvEAS~-MAqyA~~Lv~ 220 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQA-GA-KKVYAVEASE-MAQYARKLVA 220 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHh-Cc-ceEEEEehhH-HHHHHHHHHh
Confidence 445678999999999999999986 44 6999999985 6677776544
No 190
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.66 E-value=0.0076 Score=50.90 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=42.1
Q ss_pred CCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 172 PRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
|-+--..|++.++... .. ++..|||-.+|||.-++++.. + +-+.+|+|++++.+++|++
T Consensus 173 ~~~kP~~l~~~lI~~~-t~----~gdiVlDpF~GSGTT~~aa~~-l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 173 PTQKPVELIERLIKAS-TN----PGDIVLDPFAGSGTTAVAAEE-L--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-S-HHHHHHHHHHH-S-----TT-EEEETT-TTTHHHHHHHH-T--T-EEEEEESSHHHHHHHHH
T ss_pred eecCCHHHHHHHHHhh-hc----cceeeehhhhccChHHHHHHH-c--CCeEEEEeCCHHHHHHhcC
Confidence 4444455777777665 21 456899999999999988766 3 4689999999999999975
No 191
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.0071 Score=54.61 Aligned_cols=42 Identities=17% Similarity=0.239 Sum_probs=37.5
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
+..||++|+|.|+++..|++.. .+|+|+|+++..++..++..
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~ 72 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERF 72 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhc
Confidence 5689999999999999999973 68999999999999887764
No 192
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.62 E-value=0.0015 Score=58.39 Aligned_cols=87 Identities=15% Similarity=0.273 Sum_probs=58.8
Q ss_pred eEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCC--cEEEEEe
Q 026108 150 QYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK--GSIIAVD 227 (243)
Q Consensus 150 ~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~--a~V~avD 227 (243)
.|..-...+|+.-+..++.-|.+ +-+.|...+-.+. .. ......+||++|||.|....-+.+.. ++ ..|+++|
T Consensus 30 ~y~~~~~k~wD~fy~~~~~rFfk--dR~wL~~Efpel~-~~-~~~~~~~ilEvGCGvGNtvfPll~~~-~n~~l~v~acD 104 (264)
T KOG2361|consen 30 KYEREASKYWDTFYKIHENRFFK--DRNWLLREFPELL-PV-DEKSAETILEVGCGVGNTVFPLLKTS-PNNRLKVYACD 104 (264)
T ss_pred hhhcchhhhhhhhhhhccccccc--hhHHHHHhhHHhh-Cc-cccChhhheeeccCCCcccchhhhcC-CCCCeEEEEcC
Confidence 35544555566555566666643 3344444444444 11 11122379999999999988888864 66 8999999
Q ss_pred CCHHHHHHHHHHHH
Q 026108 228 LNPLAAAVAAFNAQ 241 (243)
Q Consensus 228 iS~~AL~~Ar~Na~ 241 (243)
.|+.|+++-++|.+
T Consensus 105 fsp~Ai~~vk~~~~ 118 (264)
T KOG2361|consen 105 FSPRAIELVKKSSG 118 (264)
T ss_pred CChHHHHHHHhccc
Confidence 99999999998864
No 193
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.62 E-value=0.0096 Score=52.86 Aligned_cols=61 Identities=18% Similarity=0.321 Sum_probs=49.2
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
|+.-.+++.+++.+ .++++||||+=+|+-+++.|..+.++++|+++|+++++.+++.+-.+
T Consensus 59 ~d~g~fl~~li~~~-------~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k 119 (237)
T KOG1663|consen 59 PDKGQFLQMLIRLL-------NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVK 119 (237)
T ss_pred hHHHHHHHHHHHHh-------CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHH
Confidence 34445566666655 35689999999999999999999778999999999999999866443
No 194
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=96.62 E-value=0.0028 Score=58.92 Aligned_cols=82 Identities=17% Similarity=0.265 Sum_probs=62.2
Q ss_pred ccccccCCCcccCC-ccHHHHHHHHHHHhhhcCCCCCCC--cEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108 160 DLVLSVEEGVFIPR-PETELMVDLVSDVLVRDNDGLRDG--FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (243)
Q Consensus 160 ~l~f~v~~~vliPR-p~TElLv~~v~~~l~~~~~~~~~~--rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A 236 (243)
|+...+.++.|+|+ |.---.+.++-+++ ...+..++. +-+|||||.-||--++..+. -++..+|+|+++-.+..|
T Consensus 65 gl~veiP~grLcPtVPnR~nYihwI~DLL-ss~q~~k~~i~~GiDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a 142 (419)
T KOG2912|consen 65 GLSVEIPLGRLCPTVPNRLNYIHWIEDLL-SSQQSDKSTIRRGIDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYA 142 (419)
T ss_pred CceEecCccccCCCCccchhhHHHHHHHh-hcccCCCcceeeeeeccCchhhhHHhhhchh-ccceeeeeeccccccchh
Confidence 56777889999998 76666777777777 333322222 24899999999977766554 468999999999999999
Q ss_pred HHHHHhC
Q 026108 237 AFNAQRI 243 (243)
Q Consensus 237 r~Na~~~ 243 (243)
..|+.+|
T Consensus 143 ~snV~qn 149 (419)
T KOG2912|consen 143 KSNVEQN 149 (419)
T ss_pred hcccccc
Confidence 9998764
No 195
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.57 E-value=0.003 Score=55.19 Aligned_cols=41 Identities=34% Similarity=0.345 Sum_probs=35.0
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
..+|+|||.|+|.+++.+++++ |+.+++..|. |+.++.+++
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~ 141 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE 141 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH
T ss_pred ccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc
Confidence 3579999999999999999997 9999999999 888887765
No 196
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.51 E-value=0.0082 Score=56.91 Aligned_cols=65 Identities=25% Similarity=0.220 Sum_probs=49.9
Q ss_pred CccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCC--------------------------------
Q 026108 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK-------------------------------- 220 (243)
Q Consensus 173 Rp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~-------------------------------- 220 (243)
-|.-|.|...++... ... ++..++|--||||.|.|..|... ++
T Consensus 173 ApLketLAaAil~la-gw~---~~~pl~DPmCGSGTi~IEAAl~~-~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~ 247 (381)
T COG0116 173 APLKETLAAAILLLA-GWK---PDEPLLDPMCGSGTILIEAALIA-ANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEER 247 (381)
T ss_pred CCchHHHHHHHHHHc-CCC---CCCccccCCCCccHHHHHHHHhc-cccCCccccccchhhhhhccHHHHHHHHHHHHHH
Confidence 377788877776543 221 23469999999999999999863 32
Q ss_pred c-------EEEEEeCCHHHHHHHHHHHHh
Q 026108 221 G-------SIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 221 a-------~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+ .++|+|+++.+++.|+.|+++
T Consensus 248 a~~~~~~~~~~G~Did~r~i~~Ak~NA~~ 276 (381)
T COG0116 248 ARRGKELPIIYGSDIDPRHIEGAKANARA 276 (381)
T ss_pred HhhcCccceEEEecCCHHHHHHHHHHHHh
Confidence 2 277999999999999999975
No 197
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.50 E-value=0.014 Score=53.27 Aligned_cols=90 Identities=20% Similarity=0.336 Sum_probs=62.2
Q ss_pred CceeEEeeeccccccccccCCCc--ccCCccHHHHHH---------------HHHHHhhhcCCCCCCCcEEEeccCCcHH
Q 026108 147 KPFQYLVGCEHWRDLVLSVEEGV--FIPRPETELMVD---------------LVSDVLVRDNDGLRDGFWVDLGTGSGAI 209 (243)
Q Consensus 147 ~Pl~yi~g~~~f~~l~f~v~~~v--liPRp~TElLv~---------------~v~~~l~~~~~~~~~~rVLDLGtGSG~i 209 (243)
-|..-|+|+. +|-.+..+.+- .+-+|.-|++.- .++..+ ...++.+|++-|||||.+
T Consensus 46 ~~h~~iIGK~--~G~~v~sskG~~vylL~PTpELWTl~LphRTQI~Yt~Dia~I~~~L----~i~PGsvV~EsGTGSGSl 119 (314)
T KOG2915|consen 46 LPHSDIIGKP--YGSKVASSKGKFVYLLQPTPELWTLALPHRTQILYTPDIAMILSML----EIRPGSVVLESGTGSGSL 119 (314)
T ss_pred cchhheecCC--ccceeeecCCcEEEEecCChHHhhhhccCcceEEecccHHHHHHHh----cCCCCCEEEecCCCcchH
Confidence 4555667753 35555556552 333455555432 222333 233577999999999999
Q ss_pred HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 210 AIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 210 ai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+.++++..+|.++++-.|+...-.+.|++..++
T Consensus 120 ShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~ 152 (314)
T KOG2915|consen 120 SHAIARAVAPTGHLYTFEFHETRAEKALEEFRE 152 (314)
T ss_pred HHHHHHhhCcCcceEEEEecHHHHHHHHHHHHH
Confidence 999999999999999999988877777776554
No 198
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.36 E-value=0.013 Score=52.46 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=43.8
Q ss_pred HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
+++.+.+.+ . ..++..|+|+|.|.|.++..|++.. .+|+++|+++..++..++..
T Consensus 18 ~~~~Iv~~~-~---~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~ 72 (262)
T PF00398_consen 18 IADKIVDAL-D---LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERF 72 (262)
T ss_dssp HHHHHHHHH-T---CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHC
T ss_pred HHHHHHHhc-C---CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHh
Confidence 456666655 2 1145689999999999999999872 79999999999999888754
No 199
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.32 E-value=0.007 Score=56.38 Aligned_cols=44 Identities=14% Similarity=0.054 Sum_probs=31.9
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
++.+|||||||-|--..-..+. .-..++|+||+.++|+.|++..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry 105 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERY 105 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHH
Confidence 4578999999977655555443 2369999999999999999866
No 200
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.31 E-value=0.028 Score=48.16 Aligned_cols=63 Identities=17% Similarity=0.031 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHhhhcCC-CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 175 ETELMVDLVSDVLVRDND-GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 175 ~TElLv~~v~~~l~~~~~-~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
..+++..++.+-+..... .....+++|+|||.|.=||.+|-.+ |+.+|+.+|-+..=+..-++
T Consensus 27 ~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~ 90 (184)
T PF02527_consen 27 PEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKE 90 (184)
T ss_dssp HHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHH
Confidence 345555566654421111 1112279999999999999999986 99999999999866655443
No 201
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.23 E-value=0.019 Score=52.95 Aligned_cols=60 Identities=28% Similarity=0.392 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 178 lLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
.|.+.+++.+ . ..+++.++|.=+|.|-.+..+++.+ ++++|+|+|.+++|++.|+++.+.
T Consensus 7 Vll~Evl~~L-~---~~~ggiyVD~TlG~GGHS~~iL~~l-~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 7 VLLDEVVEGL-N---IKPDGIYIDCTLGFGGHSKAILEQL-GTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred hhHHHHHHhc-C---cCCCCEEEEeCCCChHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHhh
Confidence 3566677766 2 2245689999999999999999987 458999999999999999987653
No 202
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.22 E-value=0.0095 Score=58.43 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=39.6
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
...+||||||.|-+.+.+|... |+..++|+|++...+..|.+.+.
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~ 392 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAG 392 (506)
T ss_pred CceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHH
Confidence 4579999999999999999996 99999999999988887766554
No 203
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.19 E-value=0.017 Score=53.57 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=50.8
Q ss_pred CCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHH
Q 026108 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG---SKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 167 ~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~---p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
|..+--|.|.++|-+...++. ..- ..+..++|||||+|.=...|...+. .....+++|||.++|+.+.+++.
T Consensus 51 pEYYptr~E~~iL~~~~~~Ia-~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 51 PEYYLTNDEIEILKKHSSDIA-ASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred CccCChHHHHHHHHHHHHHHH-Hhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh
Confidence 333333678888877766655 221 1345799999999997665555441 23579999999999999998876
No 204
>PRK10742 putative methyltransferase; Provisional
Probab=96.17 E-value=0.018 Score=51.68 Aligned_cols=42 Identities=29% Similarity=0.249 Sum_probs=38.7
Q ss_pred cEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 198 rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+|||+.+|+|..++.+|.. +++|+++|.|+.+..+.++|+++
T Consensus 91 ~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~r 132 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLAR 132 (250)
T ss_pred EEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHH
Confidence 7999999999999999986 47899999999999999999875
No 205
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=96.12 E-value=0.0081 Score=51.98 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.5
Q ss_pred CCCcEEEeccCCcHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARV 216 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~ 216 (243)
++.+|||||||.|.+...|.++
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~ 34 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE 34 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh
Confidence 3578999999999999999886
No 206
>PRK11524 putative methyltransferase; Provisional
Probab=96.05 E-value=0.028 Score=50.90 Aligned_cols=58 Identities=10% Similarity=-0.005 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 176 TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
-+.|++.++... . .++..|||-++|||.-++++.+ + +-+.+|+|++++.+++|++.++
T Consensus 194 P~~L~erlI~~~-S----~~GD~VLDPF~GSGTT~~AA~~-l--gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 194 PEALLKRIILAS-S----NPGDIVLDPFAGSFTTGAVAKA-S--GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred hHHHHHHHHHHh-C----CCCCEEEECCCCCcHHHHHHHH-c--CCCEEEEeCCHHHHHHHHHHHH
Confidence 345666666554 1 2467899999999998887766 3 4699999999999999998764
No 207
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.96 E-value=0.029 Score=50.94 Aligned_cols=61 Identities=25% Similarity=0.245 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcEEEeccCCc----HHHHHHHHHhC----CCcEEEEEeCCHHHHHHHHH
Q 026108 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSG----AIAIGIARVLG----SKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 177 ElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG----~iai~LA~~~~----p~a~V~avDiS~~AL~~Ar~ 238 (243)
+.+.+.+++.+...... ..-+|+-.||+|| .||+.|...++ ...+|+|+|||..+|+.|++
T Consensus 79 ~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 79 EELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred HHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 44566666644221111 3568999999999 57888888752 14799999999999999975
No 208
>PLN02823 spermine synthase
Probab=95.94 E-value=0.015 Score=54.25 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=39.0
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
.+++||-||+|.|..+..+.+.. +..+|++||++++.+++|+++.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~ 147 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHL 147 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhc
Confidence 34689999999999999888753 4578999999999999999875
No 209
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.92 E-value=0.024 Score=49.88 Aligned_cols=64 Identities=22% Similarity=0.149 Sum_probs=46.3
Q ss_pred CCccHHHHHHHHHHHhhhcCCCCC--CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108 172 PRPETELMVDLVSDVLVRDNDGLR--DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (243)
Q Consensus 172 PRp~TElLv~~v~~~l~~~~~~~~--~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar 237 (243)
+|-..|++..++.+.+. .....+ +.+++|+|+|.|.=|+-+|-.+ |+.+|+.+|-...=+..-+
T Consensus 43 ~~~~~e~~~rHilDSl~-~~~~~~~~~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~ 108 (215)
T COG0357 43 IRDPEELWQRHILDSLV-LLPYLDGKAKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLR 108 (215)
T ss_pred CCCHHHHHHHHHHHHhh-hhhcccccCCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHH
Confidence 45556777777777652 112222 4789999999999999999765 8899999998775444433
No 210
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=95.89 E-value=0.016 Score=50.02 Aligned_cols=62 Identities=24% Similarity=0.189 Sum_probs=36.5
Q ss_pred HHHHHHHHHH-HhhhcCCCCCCCcEEEeccCCcH----HHHHHHHHhC---C-CcEEEEEeCCHHHHHHHHH
Q 026108 176 TELMVDLVSD-VLVRDNDGLRDGFWVDLGTGSGA----IAIGIARVLG---S-KGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 176 TElLv~~v~~-~l~~~~~~~~~~rVLDLGtGSG~----iai~LA~~~~---p-~a~V~avDiS~~AL~~Ar~ 238 (243)
-+.+.+.+++ .+ ......+..+|+..||+||- +|+.+..... + ..+|+|+|||+.+|+.|++
T Consensus 12 f~~l~~~vlp~~~-~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 12 FEALRDEVLPPLL-ARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp HHHHHHHHH--------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHHHhhc-cccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 3456666663 33 21122245689999999995 4555555210 1 3699999999999999986
No 211
>PRK13699 putative methylase; Provisional
Probab=95.82 E-value=0.043 Score=48.34 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=45.6
Q ss_pred CCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 172 PRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
|-+--..|.+.++... . .++..|||-.||||..+++..+. +-+.+|+|++++..+.|.+.++
T Consensus 145 p~~kP~~l~~~~i~~~-s----~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 145 PTEKPVTSLQPLIESF-T----HPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CCCCcHHHHHHHHHHh-C----CCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHH
Confidence 4333334556555543 1 24568999999999999987763 4689999999999999988765
No 212
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.67 E-value=0.042 Score=49.93 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=43.8
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
++.+|||+|+|.|-=+..+|...+..+.|+|.|+++.-+...++|++++
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~ 133 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL 133 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc
Confidence 4568999999999999999998755689999999999999999998864
No 213
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.64 E-value=0.019 Score=54.21 Aligned_cols=47 Identities=17% Similarity=0.087 Sum_probs=42.7
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
..+|+|--+|||.=||..|.+. +..+|+.-||||+|++++++|++.|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~-~~~~v~lNDisp~Avelik~Nv~~N 99 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVET-GVVKVVLNDISPKAVELIKENVRLN 99 (380)
T ss_pred CeEEeecccccchhHhhhhhhc-CccEEEEccCCHHHHHHHHHHHHhc
Confidence 4679999999999999999997 4449999999999999999999875
No 214
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=95.58 E-value=0.046 Score=49.94 Aligned_cols=43 Identities=16% Similarity=0.392 Sum_probs=37.1
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
+...||++|-|+|.++..|... +++|+|+|+++.+++.-.+..
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv 100 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRV 100 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHh
Confidence 4567999999999999999875 489999999999998776654
No 215
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=95.54 E-value=0.038 Score=49.96 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=34.0
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A 236 (243)
...++||||.|.|-++..++..+ .+|+++|+|+.|...-
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL 132 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRL 132 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHH
Confidence 45679999999999999999987 5899999999986543
No 216
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.52 E-value=0.04 Score=40.36 Aligned_cols=40 Identities=35% Similarity=0.548 Sum_probs=30.5
Q ss_pred EEEeccCCcHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHH
Q 026108 199 WVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 199 VLDLGtGSG~iai~LA~~~~p~-a~V~avDiS~~AL~~Ar~Na 240 (243)
++|+|||+|... .++... .. ..++++|+++.+++.++.+.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~ 92 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLG-GRGAYVVGVDLSPEMLALARARA 92 (257)
T ss_pred eEEecCCcCHHH-HHHHhC-CCCceEEEEeCCHHHHHHHHhhh
Confidence 999999999987 444432 22 48999999999999865543
No 217
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.35 E-value=0.043 Score=48.47 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=41.9
Q ss_pred CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
.+++|+||--|.+++.|-+. ++...++++|+++..++.|.+|++++
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~ 63 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKN 63 (226)
T ss_pred CceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhc
Confidence 35999999999999999997 58789999999999999999998764
No 218
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=0.039 Score=46.39 Aligned_cols=60 Identities=38% Similarity=0.541 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 175 ~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
.||. ++.++.++ .. .+.++.+|||+|.|.|-++.|++ | -..-+|+|.++-.+..++-.+-
T Consensus 57 tteQ-v~nVLSll-~~---n~~GklvDlGSGDGRiVlaaar~-g-~~~a~GvELNpwLVaysrl~a~ 116 (199)
T KOG4058|consen 57 TTEQ-VENVLSLL-RG---NPKGKLVDLGSGDGRIVLAAARC-G-LRPAVGVELNPWLVAYSRLHAW 116 (199)
T ss_pred cHHH-HHHHHHHc-cC---CCCCcEEeccCCCceeehhhhhh-C-CCcCCceeccHHHHHHHHHHHH
Confidence 3444 55667666 22 24467999999999999999986 3 3578999999999999886653
No 219
>PHA01634 hypothetical protein
Probab=95.20 E-value=0.048 Score=44.74 Aligned_cols=46 Identities=9% Similarity=-0.036 Sum_probs=41.2
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
++++|+|+|.+-|--+|..+.+ |+ ..|++++.++...+..++|.+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-GA-K~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-GA-SFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-Cc-cEEEEeccCHHHHHHHHHHhhh
Confidence 5678999999999999999986 44 6999999999999999999864
No 220
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=94.93 E-value=0.019 Score=47.87 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=29.8
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL 231 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~ 231 (243)
+.++|||||+.|..+-.+.++.++.++|+|||+.+.
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 468999999999999999987434689999999764
No 221
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=94.93 E-value=0.053 Score=49.63 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=33.9
Q ss_pred CCcEEEeccCCcH----HHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGA----IAIGIARVLG---SKGSIIAVDLNPLAAAVAAFN 239 (243)
Q Consensus 196 ~~rVLDLGtGSG~----iai~LA~~~~---p~a~V~avDiS~~AL~~Ar~N 239 (243)
.-+|+..||+||- ||+.+....+ .+.+|+|+|||+.+|+.|++-
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 3689999999995 5555555321 136899999999999999874
No 222
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=94.54 E-value=0.075 Score=50.40 Aligned_cols=48 Identities=23% Similarity=0.155 Sum_probs=39.5
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
+.++||.=+|||.=||..+++++...+|++-|+|++|++..++|++.|
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N 97 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN 97 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc
Confidence 357999999999999999999633468999999999999999999865
No 223
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.39 E-value=0.062 Score=42.55 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=26.6
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP 230 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~ 230 (243)
....+|||||.|.+.-.|.++ +....|+|.-.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~ 90 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR 90 (112)
T ss_pred CCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence 456999999999999988876 47889999754
No 224
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=94.38 E-value=0.15 Score=44.54 Aligned_cols=42 Identities=14% Similarity=0.084 Sum_probs=36.2
Q ss_pred cEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 198 rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
+||+||+|||-.+..+|.++ |+.+-.-.|.++..+..-+..+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~ 69 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWI 69 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHH
Confidence 59999999999999999998 8899999999998875554433
No 225
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=94.36 E-value=0.019 Score=51.53 Aligned_cols=42 Identities=29% Similarity=0.322 Sum_probs=37.7
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAFN 239 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a-~V~avDiS~~AL~~Ar~N 239 (243)
++.+|||-|+|-|..+|..+++ ++ +|+-+|.++..|++|..|
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lN 176 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLN 176 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccC
Confidence 4679999999999999999886 35 999999999999999877
No 226
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=94.18 E-value=0.073 Score=51.65 Aligned_cols=44 Identities=25% Similarity=0.404 Sum_probs=38.0
Q ss_pred CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
..|||+|||+|-+++.+++. |. -.|+|+|.-..+.+.|++-..+
T Consensus 68 v~vLdigtGTGLLSmMAvra-ga-D~vtA~EvfkPM~d~arkI~~k 111 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRA-GA-DSVTACEVFKPMVDLARKIMHK 111 (636)
T ss_pred EEEEEccCCccHHHHHHHHh-cC-CeEEeehhhchHHHHHHHHHhc
Confidence 46999999999999999887 44 4799999999999999986554
No 227
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=94.18 E-value=0.051 Score=45.94 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.1
Q ss_pred CCcEEEeccCCcHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARV 216 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~ 216 (243)
+.+|||+|||+|.++..++..
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~ 34 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDE 34 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhc
Confidence 457999999999999988764
No 228
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=94.15 E-value=0.2 Score=42.93 Aligned_cols=61 Identities=20% Similarity=0.249 Sum_probs=43.9
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
|....+.+.....+ ....+..||++|.|+|.|+-++.++.-+...++++|.|++.+..-.+
T Consensus 31 PsSs~lA~~M~s~I----~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~ 91 (194)
T COG3963 31 PSSSILARKMASVI----DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQ 91 (194)
T ss_pred CCcHHHHHHHHhcc----CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHH
Confidence 34445566555544 12235579999999999999887764356799999999998876554
No 229
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.06 E-value=0.045 Score=48.18 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=39.4
Q ss_pred CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
..+.|||||-|-+.+.|+-.+ |+.-+.|.||-...-+.-++.++.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~A 106 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQA 106 (249)
T ss_pred ceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHH
Confidence 459999999999999999987 999999999998888877776653
No 230
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=93.86 E-value=0.086 Score=46.60 Aligned_cols=44 Identities=23% Similarity=0.206 Sum_probs=35.7
Q ss_pred CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
..+|++|||+|.---..-.. |...|+++|-++.+-+.|.+.++.
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E 121 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAE 121 (252)
T ss_pred cceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhh
Confidence 34899999999876554332 678999999999999999887764
No 231
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.86 E-value=0.11 Score=46.63 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=41.5
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
|+-+.+.+.+..++ ....+|+|||||-==+++..... .+++.++|+||+..+++....-.
T Consensus 90 ~~Ld~fY~~if~~~------~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l 149 (251)
T PF07091_consen 90 PNLDEFYDEIFGRI------PPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFL 149 (251)
T ss_dssp GGHHHHHHHHCCCS---------SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcC------CCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHH
Confidence 44455555555543 12467999999998888877665 37789999999999999876543
No 232
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=93.85 E-value=0.18 Score=47.41 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=41.7
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p-~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
++.+|||+|.+-|-=+..+|..... +..|+|+|+|+.=++..++|+++.
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl 205 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL 205 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc
Confidence 5678999999999998888887522 356799999999999999999873
No 233
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=93.81 E-value=0.095 Score=48.56 Aligned_cols=58 Identities=26% Similarity=0.366 Sum_probs=42.9
Q ss_pred HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
|++.+++++ . ..+++.++|.=-|.|-.+.++.+.+ ++++|+|+|.+++|++.|+++.+
T Consensus 8 ll~Evl~~L-~---~~~~g~~vD~T~G~GGHS~aiL~~~-~~~~li~~DrD~~a~~~a~~~l~ 65 (310)
T PF01795_consen 8 LLKEVLEAL-N---PKPGGIYVDCTFGGGGHSKAILEKL-PNGRLIGIDRDPEALERAKERLK 65 (310)
T ss_dssp THHHHHHHH-T-----TT-EEEETT-TTSHHHHHHHHT--TT-EEEEEES-HHHHHHHHCCTC
T ss_pred cHHHHHHhh-C---cCCCceEEeecCCcHHHHHHHHHhC-CCCeEEEecCCHHHHHHHHHHHh
Confidence 566677766 2 2245689999999999999999987 66999999999999999987754
No 234
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=93.79 E-value=0.35 Score=44.59 Aligned_cols=47 Identities=17% Similarity=0.223 Sum_probs=39.7
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSK--GSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~--a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
.+.+|||++||.|..-+-..... |. .+|...|.|+.+++..++-++.
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~-~~~~~~i~LrDys~~Nv~~g~~li~~ 183 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKH-PERPDSILLRDYSPINVEKGRALIAE 183 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhC-CCCCceEEEEeCCHHHHHHHHHHHHH
Confidence 45689999999999988777765 54 6999999999999999887654
No 235
>PRK00536 speE spermidine synthase; Provisional
Probab=93.20 E-value=0.43 Score=43.21 Aligned_cols=87 Identities=3% Similarity=-0.200 Sum_probs=55.7
Q ss_pred CceeEE-eeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEE
Q 026108 147 KPFQYL-VGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIA 225 (243)
Q Consensus 147 ~Pl~yi-~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~a 225 (243)
-|.|-| +-+...+|.-+.+| ++.. -...|.+....+-.. .-.....+++||=+|.|-|..+-.+.++ +. +|+.
T Consensus 26 S~~Q~i~i~es~~fGr~LvLD-~~~~-te~dEfiYHEmLvHp-pl~~h~~pk~VLIiGGGDGg~~REvLkh--~~-~v~m 99 (262)
T PRK00536 26 SEHNILEIFKSKDFGEIAMLN-KQLL-FKNFLHIESELLAHM-GGCTKKELKEVLIVDGFDLELAHQLFKY--DT-HVDF 99 (262)
T ss_pred CCCcEEEEEEccccccEEEEe-eeee-ecchhhhHHHHHHHH-HHhhCCCCCeEEEEcCCchHHHHHHHCc--CC-eeEE
Confidence 455543 22334457777777 5543 222233333322221 1011224578999999999999999986 54 9999
Q ss_pred EeCCHHHHHHHHHH
Q 026108 226 VDLNPLAAAVAAFN 239 (243)
Q Consensus 226 vDiS~~AL~~Ar~N 239 (243)
|||+++.++.+++-
T Consensus 100 VeID~~Vv~~~k~~ 113 (262)
T PRK00536 100 VQADEKILDSFISF 113 (262)
T ss_pred EECCHHHHHHHHHH
Confidence 99999999999983
No 236
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=92.88 E-value=0.18 Score=49.34 Aligned_cols=66 Identities=24% Similarity=0.310 Sum_probs=51.6
Q ss_pred cccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHh
Q 026108 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS---KGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 169 vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p---~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
.+.||...+++++.+.. .+..+|.|-+||||.+-+..+..++. +...+|.|+++....+|+.|.-.
T Consensus 168 fyTP~~v~~liv~~l~~--------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~l 236 (489)
T COG0286 168 FYTPREVSELIVELLDP--------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLIL 236 (489)
T ss_pred cCChHHHHHHHHHHcCC--------CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHH
Confidence 46788888888776543 12347999999999998888877632 26799999999999999999754
No 237
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=92.41 E-value=0.17 Score=47.71 Aligned_cols=35 Identities=29% Similarity=0.298 Sum_probs=29.8
Q ss_pred CCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHH
Q 026108 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL 231 (243)
Q Consensus 194 ~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~ 231 (243)
.++.++|||||++|-.+-.|+++ +++|+|||..+-
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l 244 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPM 244 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhc
Confidence 35678999999999999999886 469999997763
No 238
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=91.89 E-value=0.26 Score=43.83 Aligned_cols=45 Identities=20% Similarity=0.210 Sum_probs=36.5
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
++++||=||-|.|..+-.+.+.. +..+|++||+++..++.|++-.
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f 120 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYF 120 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHT
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhc
Confidence 45789999999999999998763 4579999999999999998753
No 239
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=91.87 E-value=0.099 Score=48.40 Aligned_cols=46 Identities=24% Similarity=0.332 Sum_probs=39.5
Q ss_pred CCcEEEeccCCcHHHH-HHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 196 DGFWVDLGTGSGAIAI-GIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai-~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
+..|+||..|-|++.+ .+.+. |+ ..|+|+|.+|.+++--++|++.|
T Consensus 195 ~eviVDLYAGIGYFTlpflV~a-gA-k~V~A~EwNp~svEaLrR~~~~N 241 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTA-GA-KTVFACEWNPWSVEALRRNAEAN 241 (351)
T ss_pred cchhhhhhcccceEEeehhhcc-Cc-cEEEEEecCHHHHHHHHHHHHhc
Confidence 4569999999999999 66664 33 69999999999999999999865
No 240
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=91.37 E-value=0.62 Score=44.59 Aligned_cols=40 Identities=20% Similarity=0.129 Sum_probs=34.8
Q ss_pred CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
..++|+|.|-|.++-.++-.+ +..|+|||-|..+.+.|++
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence 459999999999999999875 6899999999888777764
No 241
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=91.09 E-value=0.34 Score=43.60 Aligned_cols=41 Identities=27% Similarity=0.363 Sum_probs=31.3
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N 239 (243)
..+||+||+|+|..|+.+|... .++|+..|... .++.-+.|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~-~~~~L~~~ 127 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL--GAEVVLTDLPK-VVENLKFN 127 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh--cceeccCCchh-hHHHHHHh
Confidence 3469999999999999999864 58999999854 44444444
No 242
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=91.05 E-value=0.97 Score=41.25 Aligned_cols=67 Identities=24% Similarity=0.278 Sum_probs=36.7
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
+..+.|++.-...+ .......+.+|+=||+|. ..-+|.+++..++++.|+++|++++|++.|++=++
T Consensus 100 ~nY~~L~~lE~~~l-~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~ 167 (276)
T PF03059_consen 100 PNYEKLVRLEYAAL-RIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVA 167 (276)
T ss_dssp HHHHHHHHHHHH-H-TT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHh
Confidence 44555655444444 111111245899999994 44477777665567899999999999999987443
No 243
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=90.98 E-value=0.43 Score=42.21 Aligned_cols=46 Identities=22% Similarity=0.254 Sum_probs=35.0
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCC-------CcEEEEEeCCHHHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGS-------KGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p-------~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
+.+|+++|.|+|.++.-+...+.. ..+++.||+|+...+.-++++.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 368999999999999998887632 2489999999988877777653
No 244
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=90.96 E-value=0.35 Score=42.25 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=31.1
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCC
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLN 229 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS 229 (243)
++.+|||+||-.|..+.-.-++.+|++.|.|||+-
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 35689999999999999888888899999999974
No 245
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=90.63 E-value=1.4 Score=39.26 Aligned_cols=68 Identities=19% Similarity=0.241 Sum_probs=43.9
Q ss_pred CcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH----HHHHHHHH
Q 026108 168 GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP----LAAAVAAF 238 (243)
Q Consensus 168 ~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~----~AL~~Ar~ 238 (243)
+++.|. .--|...++.-+ ......++.+||-||..||.-.-.++...++++.|+|||.|+ +.+++|++
T Consensus 49 R~W~P~--RSKLaAai~~Gl-~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~ 120 (229)
T PF01269_consen 49 RVWNPF--RSKLAAAILKGL-ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK 120 (229)
T ss_dssp EEE-TT--T-HHHHHHHTT--S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred eecCch--hhHHHHHHHcCc-cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc
Confidence 355554 223444444333 212233467899999999999999999988789999999999 45566654
No 246
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=90.63 E-value=0.96 Score=41.36 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=39.0
Q ss_pred CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
++||=||-|.|..+-.+.++. +-.+++.|||+++.+++|++-.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l 120 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYL 120 (282)
T ss_pred CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhc
Confidence 589999999999999999984 6789999999999999999743
No 247
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.46 E-value=0.37 Score=42.13 Aligned_cols=37 Identities=38% Similarity=0.562 Sum_probs=32.3
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL 231 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~ 231 (243)
++.+|+|||+-.|-.+..+++..+++..|+|||+.|-
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~ 81 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM 81 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc
Confidence 3568999999999999999999877677999999873
No 248
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=89.92 E-value=1.5 Score=40.67 Aligned_cols=60 Identities=27% Similarity=0.417 Sum_probs=47.9
Q ss_pred HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
|.+.+++.+ . ..+++..+|.==|-|-.+-++...+++.+.++|+|.++.|++.|++....
T Consensus 11 Ll~E~i~~L-~---~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~ 70 (314)
T COG0275 11 LLNEVVELL-A---PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE 70 (314)
T ss_pred HHHHHHHhc-c---cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc
Confidence 555666665 2 22457899999999999999999985567899999999999999987643
No 249
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=89.40 E-value=0.45 Score=43.50 Aligned_cols=37 Identities=19% Similarity=0.069 Sum_probs=31.9
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAA 233 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL 233 (243)
.+++|||||||+|.-+|.+... ....|+..|.|.+-+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~--~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVK--GAVSVHFQDFNAEVL 152 (282)
T ss_pred cCceeEecCCcccccchhhhhh--ccceeeeEecchhhe
Confidence 5678999999999999999886 237999999998776
No 250
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=87.80 E-value=0.29 Score=47.29 Aligned_cols=45 Identities=24% Similarity=0.209 Sum_probs=40.5
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
+..|.|++||-|-+++.++++ +..|++=|.+++++++-+.|+..|
T Consensus 250 gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lN 294 (495)
T KOG2078|consen 250 GEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLN 294 (495)
T ss_pred cchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhcccc
Confidence 456999999999999999986 489999999999999999998654
No 251
>PRK10458 DNA cytosine methylase; Provisional
Probab=87.08 E-value=2.9 Score=40.95 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=35.6
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
..+++||+||.|-+.+.+-.. | .--|.++|+++.|.+.=+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHc
Confidence 458999999999999988653 2 346789999999999988884
No 252
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=87.08 E-value=1.1 Score=39.59 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=18.4
Q ss_pred HHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHH
Q 026108 180 VDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIA 214 (243)
Q Consensus 180 v~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA 214 (243)
++.+++|+ ... .+...|.|+|||.+.||.++.
T Consensus 60 vd~iI~~l-~~~--~~~~viaD~GCGdA~la~~~~ 91 (219)
T PF05148_consen 60 VDVIIEWL-KKR--PKSLVIADFGCGDAKLAKAVP 91 (219)
T ss_dssp HHHHHHHH-CTS---TTS-EEEES-TT-HHHHH--
T ss_pred HHHHHHHH-Hhc--CCCEEEEECCCchHHHHHhcc
Confidence 46666666 221 234579999999999997664
No 253
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=86.70 E-value=0.8 Score=43.03 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=35.2
Q ss_pred CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
..++|||||-|-=.+-.-+. |- ..++|+||.+..++.|++..+
T Consensus 119 ~~~~~LgCGKGGDLlKw~kA-gI-~~~igiDIAevSI~qa~~RYr 161 (389)
T KOG1975|consen 119 DDVLDLGCGKGGDLLKWDKA-GI-GEYIGIDIAEVSINQARKRYR 161 (389)
T ss_pred cccceeccCCcccHhHhhhh-cc-cceEeeehhhccHHHHHHHHH
Confidence 45899999999887776654 23 589999999999999998654
No 254
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=86.40 E-value=4.1 Score=38.65 Aligned_cols=66 Identities=20% Similarity=0.196 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHh---C----CCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL---G----SKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 176 TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~---~----p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
-|++..++++.+ ..........+++||.|.|.++--+.+.. . ...++.-||+|++..+.-+++.+.
T Consensus 59 Gella~~~~~~w-q~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 59 GELLAEQFLQLW-QELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred HHHHHHHHHHHH-HHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 455566666655 22233234579999999999987776643 1 246899999999988887777653
No 255
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=86.19 E-value=0.16 Score=45.00 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=34.4
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
+.++||||.|.|-|+..++-.+ .+|+|.|.|..+...-++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK 152 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh
Confidence 4689999999999999999876 589999999998876543
No 256
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=85.81 E-value=1.1 Score=39.10 Aligned_cols=52 Identities=15% Similarity=0.316 Sum_probs=34.9
Q ss_pred HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (243)
Q Consensus 179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar 237 (243)
+++++.+.+ ... +..+++|+.||+|++++.++.. ..+|+.-|+++..+...+
T Consensus 8 l~~~I~~~i-p~~---~~~~~vepF~G~g~V~~~~~~~---~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 8 LAKWIIELI-PKN---KHKTYVEPFAGGGSVFLNLKQP---GKRVIINDINPDLINFWK 59 (260)
T ss_dssp GHHHHHHHS--S----S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHc-CCC---CCCEEEEEecchhHHHHHhccc---ccceeeeechHHHHHHHH
Confidence 455566655 211 3568999999999999998763 369999999998887766
No 257
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.69 E-value=1.6 Score=40.99 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=38.7
Q ss_pred CCCCcEEEeccC-CcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 194 LRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 194 ~~~~rVLDLGtG-SG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
..+.+||=+|+| .|-+++..|+.+|. .+|+.+|+++..|++|++
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK 212 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH
Confidence 356789999999 58889999999854 799999999999999997
No 258
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=85.64 E-value=0.99 Score=41.04 Aligned_cols=41 Identities=27% Similarity=0.452 Sum_probs=27.8
Q ss_pred cEEEeccCC---cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108 198 FWVDLGTGS---GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (243)
Q Consensus 198 rVLDLGtGS---G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N 239 (243)
.+||||||- |.. -.+|++..|+++|+-||++|.++..++.-
T Consensus 71 QFLDlGsGlPT~~nv-HevAq~~~P~aRVVYVD~DPvv~ah~ral 114 (267)
T PF04672_consen 71 QFLDLGSGLPTAGNV-HEVAQRVAPDARVVYVDNDPVVLAHARAL 114 (267)
T ss_dssp EEEEET--S--SS-H-HHHHHHH-TT-EEEEEESSHHHHHCCHHH
T ss_pred eEEEcccCCCCCCCH-hHHHHhhCCCceEEEECCCchHHHHHHhh
Confidence 599999994 343 34555556999999999999999877764
No 259
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=85.43 E-value=0.89 Score=40.16 Aligned_cols=43 Identities=16% Similarity=0.036 Sum_probs=32.8
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
..+.||.|+|-|.++-.+.... -.+|..||.++..++.|++..
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l 98 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYL 98 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHT
T ss_pred cceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHh
Confidence 4689999999999997654432 259999999999999999754
No 260
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=83.10 E-value=1.8 Score=38.77 Aligned_cols=61 Identities=15% Similarity=0.256 Sum_probs=40.4
Q ss_pred CCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 026108 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAA 234 (243)
Q Consensus 167 ~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~ 234 (243)
..-+++|-.- -|...+.. . . -..++..+||+|+-||-++-.+..+ |. .+|+|+|+.-.-+.
T Consensus 56 ~~~yVSRG~~-KL~~ale~-F-~--l~~k~kv~LDiGsSTGGFTd~lLq~-gA-k~VyavDVG~~Ql~ 116 (245)
T COG1189 56 EQPYVSRGGL-KLEKALEE-F-E--LDVKGKVVLDIGSSTGGFTDVLLQR-GA-KHVYAVDVGYGQLH 116 (245)
T ss_pred CcCccccHHH-HHHHHHHh-c-C--cCCCCCEEEEecCCCccHHHHHHHc-CC-cEEEEEEccCCccC
Confidence 5556666332 33333222 2 1 1335778999999999999998886 44 69999998764443
No 261
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=82.75 E-value=1.6 Score=41.00 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=34.1
Q ss_pred CCCcEEEecc-CCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108 195 RDGFWVDLGT-GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (243)
Q Consensus 195 ~~~rVLDLGt-GSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N 239 (243)
++.+|+=.|. |.|.+++-+|+.. +++|+++|+|++-++.|++=
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKL 209 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHh
Confidence 3555555554 5788999999986 49999999999999998873
No 262
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=82.44 E-value=0.64 Score=35.06 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=5.9
Q ss_pred EEeccCCcHHHHHHHHHhCCCc--EEEEEeCCHH
Q 026108 200 VDLGTGSGAIAIGIARVLGSKG--SIIAVDLNPL 231 (243)
Q Consensus 200 LDLGtGSG~iai~LA~~~~p~a--~V~avDiS~~ 231 (243)
|++||..|..++.+++.+.++. +++++|..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~ 34 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG 34 (106)
T ss_dssp --------------------------EEEESS--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc
Confidence 6899999999988888663333 7999999994
No 263
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=82.37 E-value=2.4 Score=38.29 Aligned_cols=40 Identities=18% Similarity=0.114 Sum_probs=34.4
Q ss_pred CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
..++|||||-|++.-.+-.+ + -.+++.+|.|-.+++.++.
T Consensus 74 p~a~diGcs~G~v~rhl~~e-~-vekli~~DtS~~M~~s~~~ 113 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGE-G-VEKLIMMDTSYDMIKSCRD 113 (325)
T ss_pred cceeecccchhhhhHHHHhc-c-hhheeeeecchHHHHHhhc
Confidence 35999999999999988776 3 3689999999999998875
No 264
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=81.09 E-value=2.9 Score=40.48 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=43.2
Q ss_pred CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 193 ~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
+.++.||||+|+-.|-=+..+|......+.|+|-|.+..-+..-+.|+.++
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl 289 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL 289 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh
Confidence 446789999999999887777776655689999999999999999998764
No 265
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=80.58 E-value=4.3 Score=38.65 Aligned_cols=41 Identities=32% Similarity=0.400 Sum_probs=31.7
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
++.+||-| |++||-++.+... +| .+|+|||+|+.-+.+.+-
T Consensus 35 ~~d~vl~I-tSaG~N~L~yL~~-~P-~~I~aVDlNp~Q~aLleL 75 (380)
T PF11899_consen 35 PDDRVLTI-TSAGCNALDYLLA-GP-KRIHAVDLNPAQNALLEL 75 (380)
T ss_pred CCCeEEEE-ccCCchHHHHHhc-CC-ceEEEEeCCHHHHHHHHH
Confidence 45679998 6778888888776 46 799999999977666543
No 266
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.04 E-value=1.1 Score=38.35 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=44.1
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccC-CcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtG-SG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
|..|.|.-.++.-. ....+.+||+||.| +|--++.+|... +...|..+|-++++++.-++-.
T Consensus 12 pseeala~~~l~~~----n~~rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~ 74 (201)
T KOG3201|consen 12 PSEEALAWTILRDP----NKIRGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIR 74 (201)
T ss_pred ccHHHHHHHHHhch----hHHhHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHH
Confidence 55566655544321 12245789999999 555578888876 7789999999999998776643
No 267
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=78.39 E-value=4.8 Score=37.46 Aligned_cols=44 Identities=27% Similarity=0.328 Sum_probs=35.9
Q ss_pred CCCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (243)
Q Consensus 195 ~~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N 239 (243)
++.+||.+|+|+ |.+++.+|+..+ ..+|+++|.+++.++.+++.
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence 456899999988 888899999862 23699999999999888764
No 268
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=76.65 E-value=4.5 Score=39.90 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=28.7
Q ss_pred CcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHH
Q 026108 168 GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARV 216 (243)
Q Consensus 168 ~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~ 216 (243)
+..+|+ .....++.+.+.+........-..+||+|||+|.+|..|..+
T Consensus 91 gt~F~~-Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r 138 (506)
T PF03141_consen 91 GTMFPH-GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER 138 (506)
T ss_pred CccccC-CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC
Confidence 344444 333456666665521011111236999999999999999875
No 269
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=75.89 E-value=6.8 Score=37.67 Aligned_cols=85 Identities=24% Similarity=0.268 Sum_probs=54.2
Q ss_pred ceeEEeeeccccccccccCCCccc-CC---ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCC-CcE
Q 026108 148 PFQYLVGCEHWRDLVLSVEEGVFI-PR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-KGS 222 (243)
Q Consensus 148 Pl~yi~g~~~f~~l~f~v~~~vli-PR---p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p-~a~ 222 (243)
|-|.|+-+.+=.+++++.+-+--. -| --+|.|+--.+..+ ....++|=||-|.|--.-.+.+. | -.+
T Consensus 244 pYQ~iVvTr~g~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~------~~a~~vLvlGGGDGLAlRellky--P~~~q 315 (508)
T COG4262 244 PYQRIVVTRRGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSV------RGARSVLVLGGGDGLALRELLKY--PQVEQ 315 (508)
T ss_pred ccceEEEEEecCceEEEEcCceeeeechhhhhhheeeecccccc------cccceEEEEcCCchHHHHHHHhC--CCcce
Confidence 445454444334556666655433 23 22333332222222 12357999999999988888774 6 569
Q ss_pred EEEEeCCHHHHHHHHHHH
Q 026108 223 IIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 223 V~avDiS~~AL~~Ar~Na 240 (243)
|+-||.+|++++++++|-
T Consensus 316 I~lVdLDP~miela~~~~ 333 (508)
T COG4262 316 ITLVDLDPRMIELASHAT 333 (508)
T ss_pred EEEEecCHHHHHHhhhhh
Confidence 999999999999999774
No 270
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=75.55 E-value=4.3 Score=30.78 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=28.1
Q ss_pred cCCcHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 026108 204 TGSGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 204 tGSG~iai~LA~~~~p~a-~V~avDiS~~AL~~Ar~ 238 (243)
||.|.+|..+++.+..+. .|+.+|.+++.++.+++
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~ 39 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE 39 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh
Confidence 688899999988774445 89999999999888765
No 271
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=74.76 E-value=15 Score=32.39 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=37.7
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
.+..|||-.+|||..+++.... +-..+|+|++++-++++.+-.+.
T Consensus 222 ~~diVlDpf~GsGtt~~aa~~~---~r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 222 PGDIVLDPFAGSGTTGIAAKNL---GRRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred CCCEEeecCCCCChHHHHHHHc---CCceEEEecCHHHHHHHHHHHHh
Confidence 4678999999999998877653 46899999999999999886653
No 272
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=73.28 E-value=12 Score=32.84 Aligned_cols=37 Identities=27% Similarity=0.492 Sum_probs=23.4
Q ss_pred CCCcEEEeccCCcHHHHHHHHHh---CCCcEEEEEeCCHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVL---GSKGSIIAVDLNPL 231 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~---~p~a~V~avDiS~~ 231 (243)
++..|+++|+=.|--++..|..+ +++++|+||||+..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir 71 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIR 71 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GT
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcc
Confidence 34679999999998888877533 45689999999543
No 273
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=73.16 E-value=3.8 Score=39.32 Aligned_cols=63 Identities=14% Similarity=0.236 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 177 ElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
|+..+++.... .+....++....|||.|-|-....+|... ....=+|+++.+..-+.|..|.+
T Consensus 175 E~~~~ql~si~-dEl~~g~~D~F~DLGSGVGqlv~~~aa~a-~~k~svG~eim~~pS~~a~~~~~ 237 (419)
T KOG3924|consen 175 ETQLEQLRSIV-DELKLGPADVFMDLGSGVGQLVCFVAAYA-GCKKSVGFEIMDKPSQCAELNKE 237 (419)
T ss_pred hhhHHHHHHHH-HHhccCCCCcccCCCcccchhhHHHHHhh-ccccccceeeecCcHHHHHHHHH
Confidence 33344444443 22233345679999999999999998864 45678999999998888888765
No 274
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=72.86 E-value=7.5 Score=38.51 Aligned_cols=43 Identities=28% Similarity=0.313 Sum_probs=36.3
Q ss_pred CCCCcEEEeccC-CcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 194 LRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 194 ~~~~rVLDLGtG-SG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
.++.+|+=+|+| -|..++..|+.+ +++|+++|.+++.++.|++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 356789999999 477788888886 4689999999999998875
No 275
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=72.68 E-value=8.1 Score=35.87 Aligned_cols=42 Identities=36% Similarity=0.554 Sum_probs=35.6
Q ss_pred CCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 196 DGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 196 ~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
+.+|+=+|||. |.+++.+|+.+| -.+|+++|.+++=++.|++
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH
Confidence 34799999995 777888888874 4799999999999999987
No 276
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=72.16 E-value=2.1 Score=42.00 Aligned_cols=44 Identities=27% Similarity=0.295 Sum_probs=39.1
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
++.+|=+|=|+|.+...+-..+ |..++++|+++|+++++|+.|.
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f 339 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYF 339 (482)
T ss_pred cCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhh
Confidence 3568999999999999998887 7799999999999999998875
No 277
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=69.68 E-value=4.8 Score=40.88 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=30.5
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP 230 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~ 230 (243)
...||||||-.|....-.++.++.+.-|+|||+-|
T Consensus 45 a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 45 AHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 45699999999999988888887778999999876
No 278
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=68.26 E-value=20 Score=32.71 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=34.2
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar 237 (243)
.+.+||=-|||-|.++--+|.. +..|.|.|.|--|+-..+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~ 95 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASN 95 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHH
Confidence 3468999999999999999996 479999999998875544
No 279
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=67.41 E-value=12 Score=36.66 Aligned_cols=68 Identities=22% Similarity=0.290 Sum_probs=46.2
Q ss_pred CcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHH
Q 026108 168 GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG---SKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 168 ~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~---p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
.++.|+...+++++.+... ..+...+.|.+||||-+.+...+..+ ....++|-++.+.+...|+.|..
T Consensus 196 ~~~Tp~~Iv~l~~~~~~~~------~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~ 266 (501)
T TIGR00497 196 EFFTPQDISELLARIAIGK------KDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMI 266 (501)
T ss_pred eeeCcHHHHHHHHHHhccC------CCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHH
Confidence 3456776666655433211 11235699999999998876554331 12469999999999999999964
No 280
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=66.63 E-value=2.9 Score=41.22 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=43.0
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~ 243 (243)
++.+|||.-++||.=+|..|++++.-.+|++-|.++.+++.-++|++.|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N 157 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELN 157 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhc
Confidence 4568999999999999999999833358999999999999999999865
No 281
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=66.32 E-value=4.3 Score=38.83 Aligned_cols=20 Identities=40% Similarity=0.336 Sum_probs=16.0
Q ss_pred CCcEEEeccCCcHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIAR 215 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~ 215 (243)
..+|+|+|||+|..++.+..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred ceeEEEecCCCCccHHHHHH
Confidence 45799999999988776644
No 282
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=65.24 E-value=6.9 Score=35.32 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=29.5
Q ss_pred CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 193 ~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
..++.++||+|||.-..-+..|... -.+|+..|.++..++..++
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~--f~~I~l~dy~~~N~~el~k 97 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEW--FEEIVLSDYSEQNREELEK 97 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGT--EEEEEEEESSHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHh--hcceEEeeccHhhHHHHHH
Confidence 3456789999999976655444432 2589999999998876654
No 283
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=64.12 E-value=18 Score=30.55 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=32.7
Q ss_pred CCCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
++.+||..|+|+ |...+.+++.. +.+|++++.+++..+.+++
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH
Confidence 456899999986 66666777764 4799999999888777654
No 284
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=60.07 E-value=3.6 Score=39.06 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=32.4
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAA 234 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~ 234 (243)
++.-|.|=..|||.+-++.|+ + ++.|+|.||+-..+.
T Consensus 208 pGdivyDPFVGTGslLvsaa~-F--Ga~viGtDIDyr~vr 244 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAH-F--GAYVIGTDIDYRTVR 244 (421)
T ss_pred CCCEEecCccccCceeeehhh-h--cceeeccccchheee
Confidence 466799999999999999887 5 589999999988776
No 285
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=58.13 E-value=13 Score=34.52 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=15.6
Q ss_pred CCCcEEEeccCCcHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIAR 215 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~ 215 (243)
+.-+|+|+||.+|.-++.+..
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHH
T ss_pred CceEEEecCCCCCccHHHHHH
Confidence 345899999999999887765
No 286
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=57.74 E-value=20 Score=31.74 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=43.6
Q ss_pred CcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 026108 168 GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAA 233 (243)
Q Consensus 168 ~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL 233 (243)
+++-|+ ---|...++.-+ ...+..++.+||=||.-||.-.-.++.-. +...|+|||.|+...
T Consensus 52 R~Wnp~--RSKLaAaIl~Gl-~~~pi~~g~~VLYLGAasGTTvSHVSDIv-~~G~iYaVEfs~R~~ 113 (231)
T COG1889 52 REWNPR--RSKLAAAILKGL-KNFPIKEGSKVLYLGAASGTTVSHVSDIV-GEGRIYAVEFSPRPM 113 (231)
T ss_pred eeeCcc--hhHHHHHHHcCc-ccCCcCCCCEEEEeeccCCCcHhHHHhcc-CCCcEEEEEecchhH
Confidence 344454 223455555544 33344457789999999999999999987 468999999999543
No 287
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=56.41 E-value=27 Score=30.86 Aligned_cols=42 Identities=26% Similarity=0.326 Sum_probs=32.2
Q ss_pred CCCcEEEeccC-CcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtG-SG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
.+.+||..|+| .|..++.+|+.. +.+|++++.+++-.+.+++
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH
Confidence 35678888876 367777888875 5789999999988877754
No 288
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=54.98 E-value=16 Score=32.89 Aligned_cols=58 Identities=31% Similarity=0.440 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 178 lLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
.+.+.+++.+ .+.++...+|+-=|+|-.+-.+.+.. +..++++.|.+|-|-++|+.-.
T Consensus 30 Vm~devl~~l----spv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s 87 (303)
T KOG2782|consen 30 VMLDEVLDIL----SPVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHS 87 (303)
T ss_pred eehhhHHHHc----CCCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhh
Confidence 3677788877 34467789999999999998888875 8899999999999999988654
No 289
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=54.92 E-value=66 Score=29.56 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=45.3
Q ss_pred CCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHH
Q 026108 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL---GSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 167 ~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~---~p~a~V~avDiS~~AL~~Ar~ 238 (243)
|..+--|.+++++.....+.. ... .+...+|||+|+-.=+-.|...+ +--...+.+|+|...++-..+
T Consensus 54 PEYYpTRtEaaIl~~~a~Eia-~~~---g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ 124 (321)
T COG4301 54 PEYYPTRTEAAILQARAAEIA-SIT---GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATAT 124 (321)
T ss_pred ccccCchhHHHHHHHHHHHHH-Hhh---CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHH
Confidence 334444788888877766655 221 24579999999877666555544 122689999999988765443
No 290
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=54.36 E-value=29 Score=31.59 Aligned_cols=42 Identities=17% Similarity=0.438 Sum_probs=31.9
Q ss_pred CCCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
++.+||=+|+|+ |..++.+|+.. +.+|+++|.+++-++.+++
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH
Confidence 456899999854 56667777774 4689999999988887754
No 291
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=53.84 E-value=13 Score=34.16 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=22.1
Q ss_pred CCCcEEEeccCCcHHHHHHHHHh------CCCcEEEEEeCCH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVL------GSKGSIIAVDLNP 230 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~------~p~a~V~avDiS~ 230 (243)
....|.|+|||-+-||..--... ..+-.|+++|+..
T Consensus 180 ~~~vIaD~GCGEakiA~~~~~kV~SfDL~a~~~~V~~cDm~~ 221 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIASSERHKVHSFDLVAVNERVIACDMRN 221 (325)
T ss_pred CceEEEecccchhhhhhccccceeeeeeecCCCceeeccccC
Confidence 34579999999999985211100 1234566666654
No 292
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=53.40 E-value=67 Score=23.95 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=20.5
Q ss_pred CCcEEEeccCCcHH-HHHHHHHhCCCcEEEEEeCC
Q 026108 196 DGFWVDLGTGSGAI-AIGIARVLGSKGSIIAVDLN 229 (243)
Q Consensus 196 ~~rVLDLGtGSG~i-ai~LA~~~~p~a~V~avDiS 229 (243)
+++||=+|+-||.= +-.++..|+.++..++|-..
T Consensus 39 pK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 39 PKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp -SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 46899999999862 32355556678888888654
No 293
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=52.42 E-value=82 Score=28.37 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=32.9
Q ss_pred CCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 192 ~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
....+++||=+|=+- .+++++|.. +...+|+.+||++..++.-++.+++
T Consensus 41 gdL~gk~il~lGDDD-LtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~ 89 (243)
T PF01861_consen 41 GDLEGKRILFLGDDD-LTSLALALT-GLPKRITVVDIDERLLDFINRVAEE 89 (243)
T ss_dssp T-STT-EEEEES-TT--HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHH
T ss_pred CcccCCEEEEEcCCc-HHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHH
Confidence 344678899998554 668888875 3568999999999999998887764
No 294
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=51.03 E-value=31 Score=32.38 Aligned_cols=42 Identities=26% Similarity=0.355 Sum_probs=31.1
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
+.+|.-+|+|--.+--.+++. | ++|++||+++.-++.-+-.+
T Consensus 64 ghrivtigSGGcn~L~ylsr~--P-a~id~VDlN~ahiAln~lkl 105 (414)
T COG5379 64 GHRIVTIGSGGCNMLAYLSRA--P-ARIDVVDLNPAHIALNRLKL 105 (414)
T ss_pred CcEEEEecCCcchHHHHhhcC--C-ceeEEEeCCHHHHHHHHHHH
Confidence 467999999854355556553 6 79999999998887765544
No 295
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=50.08 E-value=36 Score=30.99 Aligned_cols=42 Identities=7% Similarity=0.113 Sum_probs=28.8
Q ss_pred CCCcEEEeccCCcHHHHH---HHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIG---IARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~---LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
++.+||=+|+ |.+|+. +|+......+|+++|.+++-++.|++
T Consensus 163 ~g~~VlV~G~--G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 163 DRNVIGVWGD--GNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 4567888876 556544 45542124689999999988888765
No 296
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=50.02 E-value=45 Score=30.08 Aligned_cols=34 Identities=26% Similarity=0.542 Sum_probs=27.8
Q ss_pred CCcEEEeccCCcHHHHHHHHHhC----CCcEEEEEeCC
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLG----SKGSIIAVDLN 229 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~----p~a~V~avDiS 229 (243)
...++|+|||.|-++..++..+. +...++.||..
T Consensus 19 ~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 19 DSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 45799999999999999999762 23588999974
No 297
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=49.86 E-value=40 Score=30.58 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=30.3
Q ss_pred CCCcEEEeccC-CcHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTG-SGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtG-SG~iai~LA~~~~p~a-~V~avDiS~~AL~~Ar~ 238 (243)
++.+||=.|+| .|.+++.+|+.. ++ +|+++|.+++-++.|++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~--G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTL--GAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEEeCCHHHHHHHHH
Confidence 45678877764 344556667764 44 79999999999998875
No 298
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=46.30 E-value=43 Score=34.37 Aligned_cols=44 Identities=25% Similarity=0.117 Sum_probs=32.2
Q ss_pred CcEEEeccCC--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 197 GFWVDLGTGS--GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 197 ~rVLDLGtGS--G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
.+|.=+|+|+ ..|+..+|.. .+..|+.+|+++++++.+++++++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~--~G~~V~l~d~~~~~l~~~~~~~~~ 355 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATK--AGLPVRIKDINPQGINHALKYSWD 355 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4688888876 4445555532 368999999999999998877653
No 299
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=44.80 E-value=1.5e+02 Score=25.30 Aligned_cols=44 Identities=27% Similarity=0.253 Sum_probs=32.9
Q ss_pred CCCCCcEEEeccCCcHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHH
Q 026108 193 GLRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 193 ~~~~~rVLDLGtGSG~iai~LA~~~-~p~a~V~avDiS~~AL~~Ar~ 238 (243)
..++++|+=+|.| .+|..+|+.+ ..+++|+++|.++++++...+
T Consensus 25 ~l~gk~v~I~G~G--~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~ 69 (200)
T cd01075 25 SLEGKTVAVQGLG--KVGYKLAEHLLEEGAKLIVADINEEAVARAAE 69 (200)
T ss_pred CCCCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 4456788888776 6888887765 235799999999988776554
No 300
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=43.27 E-value=54 Score=30.15 Aligned_cols=42 Identities=33% Similarity=0.394 Sum_probs=29.8
Q ss_pred CCCcEEEeccCC-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtGS-G~iai~LA~~~~p~a-~V~avDiS~~AL~~Ar~ 238 (243)
.+.+||=.|+|. |.+++.+|+.. ++ +|+++|.+++-++.|++
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~--G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMA--KASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence 456777777642 44456677765 45 79999999998888764
No 301
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=43.24 E-value=71 Score=28.78 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=36.4
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
+++|||.+|=|-|++.-.+... .| .+=+-+|..++.++.-+++.
T Consensus 101 kggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~g 144 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWG 144 (271)
T ss_pred CCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhcc
Confidence 5789999999999999988776 46 46677899999998877653
No 302
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=42.74 E-value=60 Score=29.42 Aligned_cols=42 Identities=17% Similarity=0.110 Sum_probs=31.4
Q ss_pred CCCcEEEeccC-CcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtG-SG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
++.+||=.|+| .|.+++.+|+.. +++|+++|.+++-++.|++
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA 207 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH
Confidence 45678888864 444556677764 5789999999998888876
No 303
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=42.47 E-value=57 Score=29.62 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=30.1
Q ss_pred CCCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeC---CHHHHHHHHH
Q 026108 195 RDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDL---NPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDi---S~~AL~~Ar~ 238 (243)
++.+||=+|+|. |.+++.+|+.. +++|+++|. +++-++.+++
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHH
Confidence 456788888753 55666777764 568999987 6778777764
No 304
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=42.14 E-value=57 Score=29.09 Aligned_cols=41 Identities=32% Similarity=0.370 Sum_probs=30.5
Q ss_pred CCCcEEEeccCC-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHH
Q 026108 195 RDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAA 237 (243)
Q Consensus 195 ~~~rVLDLGtGS-G~iai~LA~~~~p~a-~V~avDiS~~AL~~Ar 237 (243)
++.+||-.|+|. |..++.+|+.. +. +|++++.+++..+.++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~ 207 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVAR 207 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHH
Confidence 466788888775 66777778875 45 7999999888776554
No 305
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=41.97 E-value=30 Score=32.62 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=33.7
Q ss_pred CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
...+|+|.|.|.+.-.+..++ | +|.+++.+...+-.++.+.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~ 219 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYL 219 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhh
Confidence 468999999999998888876 5 5889999888777776664
No 306
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=41.67 E-value=68 Score=28.64 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=25.5
Q ss_pred CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (243)
Q Consensus 197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar 237 (243)
.+|||.=+|-|.=++.+|. + +++|+++|.|+..-.+.+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~-~--G~~V~~lErspvia~Ll~ 114 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLAS-L--GCKVTGLERSPVIAALLK 114 (234)
T ss_dssp --EEETT-TTSHHHHHHHH-H--T--EEEEE--HHHHHHHH
T ss_pred CEEEECCCcchHHHHHHHc-c--CCeEEEEECCHHHHHHHH
Confidence 3799999999999999997 4 479999999995544433
No 307
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=40.44 E-value=20 Score=33.13 Aligned_cols=38 Identities=24% Similarity=0.128 Sum_probs=29.5
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
+..++|.|||.|-...- .|...++|.|++..-+..|++
T Consensus 46 gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~ 83 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKR 83 (293)
T ss_pred cceeeecccCCcccCcC-----CCcceeeecchhhhhcccccc
Confidence 45699999999976541 266789999999988877654
No 308
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=39.86 E-value=59 Score=29.64 Aligned_cols=42 Identities=31% Similarity=0.293 Sum_probs=29.6
Q ss_pred CCCcEEEeccCC-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtGS-G~iai~LA~~~~p~a-~V~avDiS~~AL~~Ar~ 238 (243)
++.+||=.|+|. |..++.+|+.. ++ +|+++|.+++-++.+++
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALA--GASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence 456788777642 44456677764 45 59999999988888764
No 309
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.51 E-value=1.1e+02 Score=28.41 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=33.7
Q ss_pred CCCCCcEEEeccCCcH---HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 193 GLRDGFWVDLGTGSGA---IAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 193 ~~~~~rVLDLGtGSG~---iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+..++.||==|.|+|. ++..+|++ +++++..|++.+..+...+++++
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~r---g~~~vl~Din~~~~~etv~~~~~ 84 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKR---GAKLVLWDINKQGNEETVKEIRK 84 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHh---CCeEEEEeccccchHHHHHHHHh
Confidence 4456778888888884 44555553 46899999999888777666653
No 310
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=39.39 E-value=46 Score=31.37 Aligned_cols=42 Identities=21% Similarity=0.161 Sum_probs=31.2
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFN 239 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p-~a~V~avDiS~~AL~~Ar~N 239 (243)
..+++=+|+ |.+|..+++.+.. +..|+.+|.+++.++..++.
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~ 273 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE 273 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence 456766555 7888888887633 46899999999988876653
No 311
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=38.82 E-value=50 Score=33.88 Aligned_cols=42 Identities=29% Similarity=0.153 Sum_probs=29.0
Q ss_pred cEEEeccCCcHHHHHHHHHh--CCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 198 FWVDLGTGSGAIAIGIARVL--GSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 198 rVLDLGtGSG~iai~LA~~~--~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
+|.=||+| .+|..+|..+ ..+.+|+.+|+++++++.+..+++
T Consensus 306 ~v~ViGaG--~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~ 349 (699)
T TIGR02440 306 KVGILGGG--LMGGGIASVTATKAGIPVRIKDINPQGINNALKYAW 349 (699)
T ss_pred EEEEECCc--HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH
Confidence 57777665 4444443322 136899999999999999887764
No 312
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=38.30 E-value=66 Score=27.70 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=30.3
Q ss_pred CCCcEEEeccCC-cHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTGS-GAIAIGIARVLGSKGS-IIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtGS-G~iai~LA~~~~p~a~-V~avDiS~~AL~~Ar~ 238 (243)
++.++|=.|+|. |..++.+|+.. +.+ |++++.+++-++.+++
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~--g~~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAA--GAREVVGVDPDAARRELAEA 140 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEECCCHHHHHHHHH
Confidence 456677777765 55667777775 356 9999999888777654
No 313
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=37.32 E-value=93 Score=29.63 Aligned_cols=43 Identities=37% Similarity=0.431 Sum_probs=33.3
Q ss_pred CCCcEEEeccC-CcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtG-SG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
++..+.=+||| -|--+|.-|+..+ ..+++|||++++-+++|++
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKK 228 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHh
Confidence 45678888887 4666666677653 3599999999999999986
No 314
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=37.10 E-value=31 Score=31.53 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=36.5
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH----HHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP----LAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~----~AL~~Ar~ 238 (243)
++.+||=||.+||.---.+....+|..-|+|||.|. +.+.+|++
T Consensus 156 pGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk 203 (317)
T KOG1596|consen 156 PGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK 203 (317)
T ss_pred CCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc
Confidence 467899999999998888888888999999999997 44555544
No 315
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=35.52 E-value=1.3e+02 Score=29.00 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=28.9
Q ss_pred CCCCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 194 LRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 194 ~~~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
..+.+|+=+|+|. |...+..++.+ +++|+.+|+++.-++.|++
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh
Confidence 3567899888874 33333333443 5799999999987777654
No 316
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=34.38 E-value=1.2e+02 Score=28.63 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=35.1
Q ss_pred CCCcEEEeccCCcHHHHHHHHHh------CCCcEEEEEeC----CHHHHHHHHHHHHh
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVL------GSKGSIIAVDL----NPLAAAVAAFNAQR 242 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~------~p~a~V~avDi----S~~AL~~Ar~Na~~ 242 (243)
+.-+|+|+|.|.|.-=..|-+.+ .|..+|+||+. +...++.+.++..+
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~ 167 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAE 167 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHH
Confidence 45689999999997544333322 14568999999 88888888887653
No 317
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=33.99 E-value=84 Score=27.57 Aligned_cols=42 Identities=21% Similarity=0.242 Sum_probs=28.0
Q ss_pred CCCcEEEeccC-CcHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTG-SGAIAIGIARVLGSKGS-IIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtG-SG~iai~LA~~~~p~a~-V~avDiS~~AL~~Ar~ 238 (243)
++.+||=+|+| -|.+++.+|+.. +++ |+++|.+++-++.|++
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~--G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAA--GAARVVAADPSPDRRELALS 163 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence 45678877654 233344566664 454 9999999988887765
No 318
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=33.91 E-value=89 Score=31.10 Aligned_cols=42 Identities=26% Similarity=0.276 Sum_probs=32.6
Q ss_pred CCCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
++.+++=+|+|. |..++.+++.+ ++.|+++|.+++.++.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 457899999874 46666677765 4689999999998888764
No 319
>PLN02740 Alcohol dehydrogenase-like
Probab=33.07 E-value=84 Score=29.04 Aligned_cols=42 Identities=26% Similarity=0.213 Sum_probs=28.8
Q ss_pred CCCcEEEeccC-CcHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTG-SGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtG-SG~iai~LA~~~~p~a-~V~avDiS~~AL~~Ar~ 238 (243)
++.+||=+|+| -|.+++.+|+.. ++ +|+++|.+++-++.|++
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARAR--GASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHH
Confidence 45678877764 233445566664 45 69999999988888764
No 320
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=32.81 E-value=50 Score=31.78 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=34.5
Q ss_pred HHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCc-EEEEEeCCHHH
Q 026108 180 VDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKG-SIIAVDLNPLA 232 (243)
Q Consensus 180 v~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a-~V~avDiS~~A 232 (243)
+-..++-+....+.....+|||+|.|.|.-..++-..+ |+. .++.++.|+..
T Consensus 98 v~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~-Pdl~sa~ile~sp~l 150 (484)
T COG5459 98 VRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIW-PDLKSAVILEASPAL 150 (484)
T ss_pred HHHHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccC-CCchhhhhhccCHHH
Confidence 33334433233345566789999999998877777765 653 67778888743
No 321
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=32.41 E-value=1.2e+02 Score=28.55 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=28.2
Q ss_pred CCCcEEEeccC-CcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtG-SG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
.+.+|+=+|+| .|..++..++.+ +++|+.+|.+++.++.+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDA 208 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHH
Confidence 34568888776 444455555554 4689999999887765543
No 322
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=31.58 E-value=1e+02 Score=28.20 Aligned_cols=42 Identities=29% Similarity=0.188 Sum_probs=28.8
Q ss_pred CCCcEEEeccCC-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtGS-G~iai~LA~~~~p~a-~V~avDiS~~AL~~Ar~ 238 (243)
++.+||=.|+|. |.+++.+|+.. ++ +|+++|.+++-++.|++
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH
Confidence 345677677542 44455566764 45 69999999998888765
No 323
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=31.07 E-value=1.2e+02 Score=26.83 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=30.2
Q ss_pred CCCcEEEeccC-CcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108 195 RDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (243)
Q Consensus 195 ~~~rVLDLGtG-SG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar 237 (243)
++.+||-.|+| .|..++.+|+.. +.+|++++.+++.++.++
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~ 203 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELAR 203 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 45678888876 555666667764 578999999998877764
No 324
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=30.98 E-value=66 Score=31.77 Aligned_cols=35 Identities=9% Similarity=0.063 Sum_probs=28.7
Q ss_pred cCCcHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHH
Q 026108 204 TGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 204 tGSG~iai~LA~~~~-p~a~V~avDiS~~AL~~Ar~ 238 (243)
||.|.+|..+++.+. .+..|+.+|.+++.++.+++
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~ 458 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE 458 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence 788889999998762 24689999999999988864
No 325
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=30.92 E-value=1.3e+02 Score=26.77 Aligned_cols=43 Identities=37% Similarity=0.432 Sum_probs=29.8
Q ss_pred CCCcEEEeccC-CcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtG-SG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
++.+||-.|+| .|.+++.+|+..| ...|++++.+++..+.+++
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE 210 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH
Confidence 45678887765 3666677788752 1378999988877776654
No 326
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=30.77 E-value=1.1e+02 Score=27.21 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=30.4
Q ss_pred CCCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108 195 RDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (243)
Q Consensus 195 ~~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar 237 (243)
++.+||-.|+|. |..++.+|+.. +.+|+++..+++-.+.++
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~ 200 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFAR 200 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHH
Confidence 456788888764 66777888875 578999988877666553
No 327
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=29.70 E-value=41 Score=31.91 Aligned_cols=41 Identities=29% Similarity=0.295 Sum_probs=33.7
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
+..++|+|||.|-....++.. ....++|+|.++.-+..+..
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~ 151 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANE 151 (364)
T ss_pred cccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHH
Confidence 446999999999999999884 56899999999876666544
No 328
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=27.18 E-value=1.3e+02 Score=26.61 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=29.1
Q ss_pred CCCcEEEeccC-CcHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHH
Q 026108 195 RDGFWVDLGTG-SGAIAIGIARVLGSKGS-IIAVDLNPLAAAVAA 237 (243)
Q Consensus 195 ~~~rVLDLGtG-SG~iai~LA~~~~p~a~-V~avDiS~~AL~~Ar 237 (243)
++.+||-+|+| .|..++.+|+.. +.+ |++++.+++..+.++
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~ 201 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAK 201 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHH
Confidence 45678888865 255666677764 455 899999988777664
No 329
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=27.16 E-value=1.5e+02 Score=25.01 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=23.1
Q ss_pred CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCC
Q 026108 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLN 229 (243)
Q Consensus 197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS 229 (243)
+-|||||=|.|.---.|-..+ |+-.|+..|.-
T Consensus 30 G~VlElGLGNGRTydHLRe~~-p~R~I~vfDR~ 61 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIF-PDRRIYVFDRA 61 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH---SS-EEEEESS
T ss_pred CceEEeccCCCccHHHHHHhC-CCCeEEEEeee
Confidence 459999999999999998887 88999999863
No 330
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=27.10 E-value=83 Score=31.60 Aligned_cols=35 Identities=23% Similarity=0.199 Sum_probs=28.6
Q ss_pred cCCcHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHH
Q 026108 204 TGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 204 tGSG~iai~LA~~~~-p~a~V~avDiS~~AL~~Ar~ 238 (243)
||-|.+|..+++.+. .+.+++.+|.+++.++.+++
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~ 441 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK 441 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh
Confidence 788889998887652 34689999999999998865
No 331
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=27.06 E-value=83 Score=28.09 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=33.4
Q ss_pred HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 026108 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (243)
Q Consensus 179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~ 235 (243)
++..+.+++ .. ...+.+|..+|+|++.+.+. + ..++.-|++++.+..
T Consensus 14 l~~~i~~~~-p~----~~~~yvEPF~Gggsv~l~~~----~-~~~~lND~n~~Li~~ 60 (266)
T TIGR00571 14 LLPEIKKHL-PK----NFNCLVEPFVGGGAVFFNLN----P-KRYLLNDINEDLINL 60 (266)
T ss_pred HHHHHHHhc-Cc----ccCEEEEecCCcchhheeec----C-cEEEEecCCHHHHHH
Confidence 556666666 21 12479999999999988653 3 358888999987754
No 332
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=26.29 E-value=75 Score=33.39 Aligned_cols=42 Identities=29% Similarity=0.320 Sum_probs=35.1
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
...++|-..|-|.|.+..++ + +..|++||.+|.|.-.-++-+
T Consensus 91 ~~~~lDPfAG~GSIPlEAlR-L--G~~v~AvelnPvAylfLKavl 132 (875)
T COG1743 91 GPKLLDPFAGGGSIPLEALR-L--GLEVVAVELNPVAYLFLKAVL 132 (875)
T ss_pred CCcccccccCCCccchHHHh-c--CceeEEEecccHHHHHHHHHH
Confidence 45699999999999999887 4 489999999999887666543
No 333
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=26.24 E-value=1.3e+02 Score=28.19 Aligned_cols=45 Identities=27% Similarity=0.153 Sum_probs=31.7
Q ss_pred CCCcEEEec-cC-CcHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHH
Q 026108 195 RDGFWVDLG-TG-SGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFN 239 (243)
Q Consensus 195 ~~~rVLDLG-tG-SG~iai~LA~~~~p~-a~V~avDiS~~AL~~Ar~N 239 (243)
.+.+|+=+| +| -|.+++.+|+..|.+ .+|+++|.+++-++.|++.
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 345677776 33 666677777764222 3799999999999988774
No 334
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=26.19 E-value=72 Score=28.89 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=25.4
Q ss_pred CCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHH
Q 026108 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAI 209 (243)
Q Consensus 172 PRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~i 209 (243)
|||....+.+.+.+.+ ... +.-+++.+||+|=-
T Consensus 9 ~r~~Q~~~m~~v~~~~-~~~----~~~~~eapTGtGKT 41 (289)
T smart00488 9 PYPIQYEFMEELKRVL-DRG----KIGILESPTGTGKT 41 (289)
T ss_pred CCHHHHHHHHHHHHHH-HcC----CcEEEECCCCcchh
Confidence 6888888888888887 332 23599999999953
No 335
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=26.19 E-value=72 Score=28.89 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=25.4
Q ss_pred CCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHH
Q 026108 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAI 209 (243)
Q Consensus 172 PRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~i 209 (243)
|||....+.+.+.+.+ ... +.-+++.+||+|=-
T Consensus 9 ~r~~Q~~~m~~v~~~~-~~~----~~~~~eapTGtGKT 41 (289)
T smart00489 9 PYPIQYEFMEELKRVL-DRG----KIGILESPTGTGKT 41 (289)
T ss_pred CCHHHHHHHHHHHHHH-HcC----CcEEEECCCCcchh
Confidence 6888888888888887 332 23599999999953
No 336
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=26.03 E-value=1.3e+02 Score=26.78 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=28.4
Q ss_pred CCCcEEEeccC-CcHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTG-SGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtG-SG~iai~LA~~~~p~a-~V~avDiS~~AL~~Ar~ 238 (243)
++.++|=+|+| .|.+++.+|+.. ++ .|+++|.+++-++.|..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~--G~~~v~~~~~~~~rl~~a~~ 187 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAA--GGSPPAVWETNPRRRDGATG 187 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCHHHHHhhhh
Confidence 34567777765 355566677765 34 47788999988877754
No 337
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=25.68 E-value=78 Score=31.98 Aligned_cols=39 Identities=18% Similarity=0.107 Sum_probs=29.1
Q ss_pred cEEEeccCCcHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHH
Q 026108 198 FWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 198 rVLDLGtGSG~iai~LA~~~~-p~a~V~avDiS~~AL~~Ar~ 238 (243)
+|+= ||-|.+|..+++.+. .+..++.+|.+++.++.+++
T Consensus 402 ~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~ 441 (621)
T PRK03562 402 RVII--AGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK 441 (621)
T ss_pred cEEE--EecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh
Confidence 4544 566778888877552 24689999999999998865
No 338
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=25.56 E-value=27 Score=27.28 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=11.2
Q ss_pred EEEeccCCcHHHHHH
Q 026108 199 WVDLGTGSGAIAIGI 213 (243)
Q Consensus 199 VLDLGtGSG~iai~L 213 (243)
-+|||||.|.---+.
T Consensus 6 NIDIGcG~GNTmda~ 20 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAA 20 (124)
T ss_pred ccccccCCCcchhhh
Confidence 479999999864443
No 339
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=25.10 E-value=48 Score=30.62 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=25.4
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeC
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDL 228 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDi 228 (243)
.++.+.||..|||.+|-...++ +-.|++=|+
T Consensus 27 s~k~f~DiFaGtGVV~~~fkk~---~n~iiaNDl 57 (330)
T COG3392 27 SGKIFCDIFAGTGVVGRFFKKA---GNKIIANDL 57 (330)
T ss_pred CCCeeeeeccCccHHHHHHHHh---cchhhhchH
Confidence 4557999999999999998876 357888776
No 340
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=25.05 E-value=2.4e+02 Score=22.89 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=20.2
Q ss_pred CCcEEEeccCCcH-HHHHHHHHhCCCcEEEEEeCCHH
Q 026108 196 DGFWVDLGTGSGA-IAIGIARVLGSKGSIIAVDLNPL 231 (243)
Q Consensus 196 ~~rVLDLGtGSG~-iai~LA~~~~p~a~V~avDiS~~ 231 (243)
..+|+++|-|.=. +|..|+.. +..|+++|+.+.
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~ 47 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPR 47 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S
T ss_pred CCcEEEECcCCCHHHHHHHHHc---CCcEEEEECccc
Confidence 3489999999643 35555553 479999999987
No 341
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=24.92 E-value=1.5e+02 Score=26.55 Aligned_cols=42 Identities=29% Similarity=0.339 Sum_probs=27.6
Q ss_pred CCCcEEEeccC-CcHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTG-SGAIAIGIARVLGSKGS-IIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtG-SG~iai~LA~~~~p~a~-V~avDiS~~AL~~Ar~ 238 (243)
++.+||=+|+| .|.+++.+|+.. +++ |+++|.+++-++.+++
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~ 206 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKA 206 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence 35667777653 233344566664 456 9999999988887754
No 342
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=24.71 E-value=1.6e+02 Score=25.88 Aligned_cols=42 Identities=17% Similarity=0.016 Sum_probs=31.0
Q ss_pred CCCcEEEec--cCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLG--TGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLG--tGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
++.+||=.| .|.|..++.+|+.. +++|++++.+++-.+.+++
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE 186 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence 455677666 45677778888875 5789999999887777654
No 343
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=24.54 E-value=1.5e+02 Score=26.97 Aligned_cols=41 Identities=5% Similarity=0.003 Sum_probs=31.9
Q ss_pred CCCcEEEecc--CCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108 195 RDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (243)
Q Consensus 195 ~~~rVLDLGt--GSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar 237 (243)
++.+||=.|+ |.|.+++.+|+.. +++|++++.+++-.+.++
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLK 200 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHH
Confidence 4567888876 4677788888875 578999999988877765
No 344
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=24.49 E-value=2.4e+02 Score=22.03 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=27.3
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCC--CcEEEEEeCCHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGS--KGSIIAVDLNPLAAAVAA 237 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p--~a~V~avDiS~~AL~~Ar 237 (243)
++.+|+-+|+| .++..+++.+.. ..+|+.+|.+++..+...
T Consensus 18 ~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~ 60 (155)
T cd01065 18 KGKKVLILGAG--GAARAVAYALAELGAAKIVIVNRTLEKAKALA 60 (155)
T ss_pred CCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence 45679988875 566666654411 257999999987665543
No 345
>PLN02253 xanthoxin dehydrogenase
Probab=24.20 E-value=2.3e+02 Score=24.40 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=27.7
Q ss_pred CCcEEEeccCCcHHHHHHHHHhC-CCcEEEEEeCCHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAV 235 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~-p~a~V~avDiS~~AL~~ 235 (243)
++++|=.| |+|-||..+++++- .+++|+++|.+++..+.
T Consensus 18 ~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~~~~~ 57 (280)
T PLN02253 18 GKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDDLGQN 57 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 45677777 56777888887652 35799999988766543
No 346
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=23.97 E-value=1.9e+02 Score=25.70 Aligned_cols=42 Identities=10% Similarity=-0.038 Sum_probs=31.8
Q ss_pred CCCcEEEec--cCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLG--TGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLG--tGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
++.+||=.| .|.|.+++.+|+.. +++|++++.+++-.+.+++
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~ 181 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK 181 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence 456787777 35777788888874 5789999999888777754
No 347
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=23.54 E-value=1.7e+02 Score=26.59 Aligned_cols=40 Identities=33% Similarity=0.336 Sum_probs=27.6
Q ss_pred CCCcEEEeccCCcHHH---HHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIA---IGIARVLGSKG-SIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtGSG~ia---i~LA~~~~p~a-~V~avDiS~~AL~~Ar~ 238 (243)
++.+||=.|+ |.++ +.+|+.. +. +|+++|.+++-++.+++
T Consensus 187 ~g~~VlV~G~--g~vG~~a~q~ak~~--G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 187 KGSTVAIFGL--GAVGLAVAEGARIR--GASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence 4566777764 5555 4566664 45 79999999988887754
No 348
>PLN02780 ketoreductase/ oxidoreductase
Probab=23.38 E-value=2.1e+02 Score=25.96 Aligned_cols=44 Identities=18% Similarity=0.119 Sum_probs=29.4
Q ss_pred CCcEEEeccCCcHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~-~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
+..+|=.|++ |-||..+|+++ ..+++|+.++.+++.++...+++
T Consensus 53 g~~~lITGAs-~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l 97 (320)
T PLN02780 53 GSWALVTGPT-DGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSI 97 (320)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Confidence 4567777754 45566666654 12568999999998877655443
No 349
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.29 E-value=2.1e+02 Score=27.22 Aligned_cols=89 Identities=19% Similarity=0.271 Sum_probs=48.5
Q ss_pred cCCCceeEEeeeccccccccccCCCcccC---C-ccHHH-HH--------HHHHHHhhhcCCCCCCCcEEEeccCCcHHH
Q 026108 144 EKRKPFQYLVGCEHWRDLVLSVEEGVFIP---R-PETEL-MV--------DLVSDVLVRDNDGLRDGFWVDLGTGSGAIA 210 (243)
Q Consensus 144 ~~~~Pl~yi~g~~~f~~l~f~v~~~vliP---R-p~TEl-Lv--------~~v~~~l~~~~~~~~~~rVLDLGtGSG~ia 210 (243)
..++|+.+.+|...|..+... +...+.+ . |-.+. |+ -.+.+ .-...++..+.=.|.|.=-++
T Consensus 133 ~~gk~iyHfmg~StFsEYTVv-~~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~~----~Akv~~GstvAVfGLG~VGLa 207 (375)
T KOG0022|consen 133 CKGKPIYHFMGTSTFSEYTVV-DDISVAKIDPSAPLEKVCLLGCGVSTGYGAAWN----TAKVEPGSTVAVFGLGGVGLA 207 (375)
T ss_pred eCCCceEEecccccceeEEEe-ecceeEecCCCCChhheeEeeccccccchhhhh----hcccCCCCEEEEEecchHHHH
Confidence 357899888998888655432 2222221 1 11111 00 01111 112334567777777653333
Q ss_pred HHH-HHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108 211 IGI-ARVLGSKGSIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 211 i~L-A~~~~p~a~V~avDiS~~AL~~Ar~ 238 (243)
... |+..| -++++|||++++-.+.|++
T Consensus 208 v~~Gaka~G-AsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 208 VAMGAKAAG-ASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred HHHhHHhcC-cccEEEEecCHHHHHHHHh
Confidence 332 33332 3699999999999999875
No 350
>COG4877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.03 E-value=60 Score=22.92 Aligned_cols=40 Identities=25% Similarity=0.512 Sum_probs=27.5
Q ss_pred CCCCCcccCCccccCChHHHHHHHHHHHHHhhhcCCccccCCCCCCCcccHHHHHHHHHhccC
Q 026108 47 KPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLE 109 (243)
Q Consensus 47 ~~~~~l~~r~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~Ea~~Ll~~~l~ 109 (243)
++|+||.+-|+.|. ...+||...+.+.+. ..++||...+.
T Consensus 6 ~kQ~PLRl~paiy~-------Aia~wA~de~RSiNa----------------QIE~lL~E~lr 45 (63)
T COG4877 6 GKQFPLRLEPAIYA-------AIAQWAEDEFRSINA----------------QIEILLKEALR 45 (63)
T ss_pred cCcCCeecCHHHHH-------HHHHHHHHHHhhhhH----------------HHHHHHHHHHH
Confidence 67899999988774 455678777764443 45667766654
No 351
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=22.78 E-value=64 Score=28.58 Aligned_cols=31 Identities=19% Similarity=0.112 Sum_probs=22.7
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP 230 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~ 230 (243)
..++||+||=|..-.+.-.. --.|+.||+++
T Consensus 52 ~lrlLEVGals~~N~~s~~~----~fdvt~IDLns 82 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTSG----WFDVTRIDLNS 82 (219)
T ss_pred cceEEeecccCCCCcccccC----ceeeEEeecCC
Confidence 35899999987766655332 34799999986
No 352
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=22.63 E-value=1.1e+02 Score=28.94 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=26.1
Q ss_pred CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 026108 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAA 233 (243)
Q Consensus 196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL 233 (243)
+.+||==|||.|.++.-||.. |. ++-|=|.|--++
T Consensus 151 ki~iLvPGaGlGRLa~dla~~-G~--~~qGNEfSy~Ml 185 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL-GF--KCQGNEFSYFML 185 (369)
T ss_pred CceEEecCCCchhHHHHHHHh-cc--cccccHHHHHHH
Confidence 457999999999999999986 44 444446665554
No 353
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=22.46 E-value=1.8e+02 Score=26.10 Aligned_cols=41 Identities=17% Similarity=0.417 Sum_probs=28.6
Q ss_pred CCCcEEEeccCC-cHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHH
Q 026108 195 RDGFWVDLGTGS-GAIAIGIARVLGSKGS-IIAVDLNPLAAAVAA 237 (243)
Q Consensus 195 ~~~rVLDLGtGS-G~iai~LA~~~~p~a~-V~avDiS~~AL~~Ar 237 (243)
++.+||=.|+|+ |.+++.+|+.. +.+ |++++.+++-.+.++
T Consensus 162 ~g~~vlI~g~g~vG~~a~~lak~~--G~~~v~~~~~~~~~~~~~~ 204 (343)
T cd05285 162 PGDTVLVFGAGPIGLLTAAVAKAF--GATKVVVTDIDPSRLEFAK 204 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHH
Confidence 456777777765 66777788875 455 899988877666553
No 354
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=22.18 E-value=2.1e+02 Score=23.32 Aligned_cols=43 Identities=23% Similarity=0.146 Sum_probs=28.8
Q ss_pred CCCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108 195 RDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (243)
Q Consensus 195 ~~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N 239 (243)
++.+|+=+|.|. |.-|+.+++.+ +++|+..|..++.++..+.+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~~ 62 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLESL 62 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHHT
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhcc
Confidence 346788887773 44455666665 58999999999888766554
No 355
>PRK06196 oxidoreductase; Provisional
Probab=22.07 E-value=2.9e+02 Score=24.54 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=29.4
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHH
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAA 237 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~-p~a~V~avDiS~~AL~~Ar 237 (243)
.+++||=.| |+|-||..+++++- .+.+|++++.+++.++.+.
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~ 67 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREAL 67 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 345688777 45668888887652 2569999999987665443
No 356
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=21.85 E-value=92 Score=22.38 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHhhhcCCccc
Q 026108 63 LSDLKKWHNWAKALASSVRSTFA 85 (243)
Q Consensus 63 ~~~l~~~~~~a~~~~~~~~~~~~ 85 (243)
-..|..|++|+..++.-.++.+.
T Consensus 8 ~~~V~~WL~wa~~ef~L~~i~~~ 30 (68)
T cd08535 8 RDDVLQWLRWAENEFSLPPIDSN 30 (68)
T ss_pred HHHHHHHHHHHHHhcCCCCCChh
Confidence 45799999999988765555443
No 357
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=21.81 E-value=2.1e+02 Score=26.11 Aligned_cols=42 Identities=26% Similarity=0.284 Sum_probs=27.6
Q ss_pred CCCcEEEeccC-CcHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTG-SGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtG-SG~iai~LA~~~~p~a-~V~avDiS~~AL~~Ar~ 238 (243)
++.+||=+|+| -|.+++.+|+.. ++ +|+++|.+++-++.+++
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~--G~~~vi~~~~~~~~~~~~~~ 229 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAA--GASRIIGIDINPDKFELAKK 229 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH
Confidence 45667777753 233344456654 45 79999999988887753
No 358
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=21.65 E-value=1.1e+02 Score=27.25 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=29.0
Q ss_pred CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEe
Q 026108 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVD 227 (243)
Q Consensus 195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avD 227 (243)
++..|+|+--|.|..+-.++...+|...|++.=
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~ 80 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYV 80 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEec
Confidence 456899999999999999999888888888863
No 359
>PLN02827 Alcohol dehydrogenase-like
Probab=21.51 E-value=2.1e+02 Score=26.51 Aligned_cols=42 Identities=31% Similarity=0.320 Sum_probs=27.8
Q ss_pred CCCcEEEeccC-CcHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTG-SGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtG-SG~iai~LA~~~~p~a-~V~avDiS~~AL~~Ar~ 238 (243)
++.+||=.|+| -|.+++.+|+.. ++ .|+++|.+++-++.|++
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~--G~~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLR--GASQIIGVDINPEKAEKAKT 236 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHH
Confidence 45678888753 233344566664 34 69999999888877754
No 360
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=21.38 E-value=2.9e+02 Score=26.45 Aligned_cols=55 Identities=18% Similarity=0.150 Sum_probs=37.3
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCCcEEEecc---------------CCcHHHHHHHHHhC-CCcEEEEEeCCH
Q 026108 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGT---------------GSGAIAIGIARVLG-SKGSIIAVDLNP 230 (243)
Q Consensus 174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGt---------------GSG~iai~LA~~~~-p~a~V~avDiS~ 230 (243)
|+.+.+++.+...+ .. ....+++||--|- .||-+|.++|.++- .+++|+.++.+.
T Consensus 168 ~~~~~I~~~~~~~~-~~-~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~ 238 (399)
T PRK05579 168 AEPEEIVAAAERAL-SP-KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPV 238 (399)
T ss_pred CCHHHHHHHHHHHh-hh-cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCc
Confidence 67778888887766 22 2345677887665 38988888777652 357898887553
No 361
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=21.24 E-value=2.4e+02 Score=25.75 Aligned_cols=42 Identities=26% Similarity=0.277 Sum_probs=29.3
Q ss_pred CCCcEEEeccCC-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtGS-G~iai~LA~~~~p~a-~V~avDiS~~AL~~Ar~ 238 (243)
++.+||=.|+|+ |.+++.+|+.. +. .|+++|.+++-.+.+++
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~--G~~~v~~~~~~~~k~~~~~~ 229 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIA--GCTTIIAVDIVDSRLELAKE 229 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH
Confidence 356677777643 55566677775 35 69999999888776654
No 362
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=21.21 E-value=2.2e+02 Score=26.01 Aligned_cols=42 Identities=29% Similarity=0.204 Sum_probs=27.7
Q ss_pred CCCcEEEeccC-CcHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 026108 195 RDGFWVDLGTG-SGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF 238 (243)
Q Consensus 195 ~~~rVLDLGtG-SG~iai~LA~~~~p~a-~V~avDiS~~AL~~Ar~ 238 (243)
++.+||=+|+| .|.+++.+|+.. ++ +|+++|.+++-++.+++
T Consensus 184 ~g~~vlV~G~g~vG~~~~~~a~~~--G~~~Vi~~~~~~~~~~~~~~ 227 (365)
T cd08277 184 PGSTVAVFGLGAVGLSAIMGAKIA--GASRIIGVDINEDKFEKAKE 227 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH
Confidence 45667777653 233345566764 45 79999999888877753
No 363
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=20.69 E-value=2.1e+02 Score=29.46 Aligned_cols=42 Identities=24% Similarity=0.205 Sum_probs=30.0
Q ss_pred cEEEeccCCc--HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108 198 FWVDLGTGSG--AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (243)
Q Consensus 198 rVLDLGtGSG--~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~ 242 (243)
+|.=+|+|+= -|+..+|. .+..|+.+|+++++++.+++++++
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~---~G~~V~l~d~~~~~l~~~~~~~~~ 358 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSAS---KGTPIVMKDINQHSLDLGLTEAAK 358 (714)
T ss_pred eEEEECCchHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHH
Confidence 5777777742 33333443 468999999999999998877653
No 364
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=20.54 E-value=4.6e+02 Score=23.25 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=31.0
Q ss_pred CCcEEEeccCCc----HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108 196 DGFWVDLGTGSG----AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (243)
Q Consensus 196 ~~rVLDLGtGSG----~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na 240 (243)
.+.+++.+++.| .||++.|.+- .++++++|-.+++.+...++.+
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~-TgGR~vCIvp~~~~~~~~~~~l 89 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQ-TGGRHVCIVPDEQSLSEYKKAL 89 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHh-cCCeEEEEcCChhhHHHHHHHH
Confidence 456999976644 4566666664 6789999988888776665544
No 365
>PF09791 Oxidored-like: Oxidoreductase-like protein, N-terminal; InterPro: IPR019180 This entry represents the N-terminal domain of various oxidoreductase-like proteins whose exact function is, as yet, unknown.
Probab=20.47 E-value=34 Score=23.05 Aligned_cols=10 Identities=40% Similarity=0.494 Sum_probs=8.1
Q ss_pred EeccCCcHHH
Q 026108 201 DLGTGSGAIA 210 (243)
Q Consensus 201 DLGtGSG~ia 210 (243)
|=||||||..
T Consensus 16 ~~CCgSGC~~ 25 (48)
T PF09791_consen 16 DECCGSGCAP 25 (48)
T ss_pred ccccccCCcc
Confidence 6699999864
No 366
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=20.38 E-value=1.5e+02 Score=27.34 Aligned_cols=61 Identities=18% Similarity=0.337 Sum_probs=34.6
Q ss_pred cCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHh---CCC--cEEEEEeCC
Q 026108 165 VEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL---GSK--GSIIAVDLN 229 (243)
Q Consensus 165 v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~---~p~--a~V~avDiS 229 (243)
|+-..|.|-|- |...+.+.. .-..+...-.+--+||+.|.++|-+|+.+ .|+ +-|+.+|+.
T Consensus 110 vncs~f~ptPS---LsamIvnr~-~mr~di~~~nLsGMGCsAgliai~lA~~lL~~~p~~~ALVVstE~~ 175 (290)
T PF08392_consen 110 VNCSLFNPTPS---LSAMIVNRY-GMRSDIKSYNLSGMGCSAGLIAIDLAKDLLQAHPNSYALVVSTENI 175 (290)
T ss_pred EECcCCCcCCc---HHHHHHHHh-CCCcCeeeecccCCcchhhHHHHHHHHHHHHhCCCcEEEEEEEeec
Confidence 34455666653 333444433 11122223346678999999999999865 233 346666654
No 367
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=20.23 E-value=2.2e+02 Score=29.28 Aligned_cols=42 Identities=29% Similarity=0.250 Sum_probs=31.4
Q ss_pred CcEEEeccCC--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108 197 GFWVDLGTGS--GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (243)
Q Consensus 197 ~rVLDLGtGS--G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~ 241 (243)
.+|.=||+|+ .-|+..+|. .+..|+.+|+++++++.+++.++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~---~G~~V~l~d~~~~~l~~~~~~~~ 357 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSAS---KGVPVIMKDINQKALDLGMTEAA 357 (715)
T ss_pred ceEEEECCchhHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHH
Confidence 3688888886 344444544 46899999999999998877664
Done!