Query 026110
Match_columns 243
No_of_seqs 143 out of 594
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:54:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00007 (NAP-L) nucleosome as 100.0 2.7E-58 5.8E-63 419.3 19.8 216 12-227 28-284 (337)
2 KOG1507 Nucleosome assembly pr 100.0 6.9E-57 1.5E-61 404.3 15.8 213 14-226 66-343 (358)
3 PTZ00008 (NAP-S) nucleosome as 100.0 3.3E-55 7.3E-60 371.0 16.0 180 39-225 2-183 (185)
4 PF00956 NAP: Nucleosome assem 100.0 3.1E-54 6.8E-59 379.9 20.4 198 24-222 1-244 (244)
5 KOG1508 DNA replication factor 100.0 2.5E-34 5.4E-39 255.2 7.4 206 15-226 22-227 (260)
6 PF11629 Mst1_SARAH: C termina 95.9 0.03 6.5E-07 37.4 5.4 36 30-65 10-45 (49)
7 PF07352 Phage_Mu_Gam: Bacteri 91.9 0.62 1.3E-05 38.0 6.7 56 21-76 3-58 (149)
8 KOG1508 DNA replication factor 87.2 0.014 3E-07 52.4 -7.2 138 54-224 15-154 (260)
9 COG4396 Mu-like prophage host- 83.5 2.8 6.1E-05 34.2 5.2 58 19-76 16-73 (170)
10 PF07516 SecA_SW: SecA Wing an 66.2 20 0.00042 30.8 6.3 45 28-72 9-53 (214)
11 KOG0574 STE20-like serine/thre 48.8 22 0.00048 33.2 3.8 37 29-65 455-491 (502)
12 PRK15422 septal ring assembly 45.8 64 0.0014 23.8 5.1 30 15-44 5-34 (79)
13 COG3883 Uncharacterized protei 43.2 78 0.0017 28.6 6.3 35 58-92 98-134 (265)
14 PF15290 Syntaphilin: Golgi-lo 42.4 1.2E+02 0.0026 27.8 7.2 22 89-110 138-159 (305)
15 smart00502 BBC B-Box C-termina 42.2 70 0.0015 23.9 5.3 57 19-75 12-68 (127)
16 PF12998 ING: Inhibitor of gro 41.9 53 0.0011 24.3 4.4 65 14-82 8-75 (105)
17 COG3074 Uncharacterized protei 41.1 1.1E+02 0.0024 22.1 5.5 65 15-81 5-69 (79)
18 COG1382 GimC Prefoldin, chaper 38.1 1.1E+02 0.0024 24.3 5.8 27 17-43 2-28 (119)
19 COG1507 Uncharacterized conser 34.3 1.7E+02 0.0038 24.2 6.4 60 19-81 55-122 (167)
20 KOG3891 Secretory vesicle-asso 32.9 61 0.0013 30.5 4.0 87 16-106 173-270 (436)
21 PF10417 1-cysPrx_C: C-termina 31.7 17 0.00038 23.0 0.2 14 150-163 10-23 (40)
22 PF07361 Cytochrom_B562: Cytoc 31.3 1.9E+02 0.0042 22.0 6.0 40 21-60 53-103 (103)
23 PRK14145 heat shock protein Gr 30.4 2.3E+02 0.005 24.4 6.9 66 1-70 25-90 (196)
24 TIGR00963 secA preprotein tran 30.2 1.1E+02 0.0024 31.7 5.7 46 27-72 550-595 (745)
25 PF12732 YtxH: YtxH-like prote 29.6 79 0.0017 22.3 3.4 11 2-12 19-30 (74)
26 PRK01546 hypothetical protein; 28.8 1.1E+02 0.0024 22.6 4.0 44 19-63 2-45 (79)
27 PF05979 DUF896: Bacterial pro 28.2 2E+02 0.0043 20.4 5.1 41 22-63 2-42 (65)
28 PRK02539 hypothetical protein; 28.0 1.2E+02 0.0026 22.7 4.2 43 20-63 2-44 (85)
29 PRK13611 photosystem II reacti 27.8 2.1E+02 0.0046 22.2 5.6 56 102-161 14-70 (104)
30 PRK11546 zraP zinc resistance 27.1 1.6E+02 0.0035 24.1 5.2 38 15-69 40-77 (143)
31 PF14389 Lzipper-MIP1: Leucine 26.9 1.7E+02 0.0036 21.7 4.9 27 17-43 50-76 (88)
32 TIGR03714 secA2 accessory Sec 26.3 1.6E+02 0.0034 30.7 6.0 47 27-73 574-620 (762)
33 PF05600 DUF773: Protein of un 25.0 2.3E+02 0.0049 28.0 6.7 68 21-88 127-201 (507)
34 PRK14082 hypothetical protein; 24.5 76 0.0017 22.5 2.4 9 70-78 54-62 (65)
35 PRK12904 preprotein translocas 24.5 1.8E+02 0.0038 30.6 6.1 46 27-72 606-651 (830)
36 PF06005 DUF904: Protein of un 24.5 2.7E+02 0.0059 19.9 5.7 28 16-43 6-33 (72)
37 PRK12326 preprotein translocas 24.5 1.7E+02 0.0037 30.4 5.8 46 27-72 576-621 (764)
38 PF08770 SoxZ: Sulphur oxidati 24.3 52 0.0011 25.1 1.7 69 80-161 19-91 (100)
39 PRK12902 secA preprotein trans 24.0 1.8E+02 0.0038 31.0 5.9 46 27-72 721-766 (939)
40 PRK09200 preprotein translocas 23.7 1.8E+02 0.004 30.3 6.0 48 26-73 576-623 (790)
41 PF07426 Dynactin_p22: Dynacti 23.6 2.7E+02 0.0058 23.4 6.1 39 22-60 123-161 (174)
42 PRK01631 hypothetical protein; 23.5 1.4E+02 0.0031 21.8 3.8 41 22-63 3-43 (76)
43 PRK12903 secA preprotein trans 23.4 1.9E+02 0.0042 30.7 6.1 46 27-72 570-615 (925)
44 PF06708 DUF1195: Protein of u 23.2 71 0.0015 26.2 2.3 21 61-83 99-119 (157)
45 PRK12906 secA preprotein trans 22.5 2E+02 0.0044 30.1 6.0 46 27-72 587-632 (796)
46 PF14992 TMCO5: TMCO5 family 22.3 2.5E+02 0.0055 25.6 6.0 55 26-83 149-220 (280)
47 TIGR03592 yidC_oxa1_cterm memb 22.3 2.4E+02 0.0053 23.4 5.6 25 24-48 25-49 (181)
48 PRK05431 seryl-tRNA synthetase 22.2 2.1E+02 0.0046 27.3 5.9 33 13-45 27-59 (425)
49 CHL00122 secA preprotein trans 22.0 2.1E+02 0.0044 30.3 6.0 47 27-73 663-709 (870)
50 KOG4484 Uncharacterized conser 21.9 3.2E+02 0.007 23.2 6.0 35 7-41 30-68 (199)
51 PRK13103 secA preprotein trans 21.7 2.1E+02 0.0047 30.3 6.0 46 27-72 624-669 (913)
52 KOG0447 Dynamin-like GTP bindi 21.5 1.9E+02 0.0041 29.4 5.3 43 28-70 233-275 (980)
53 PRK09343 prefoldin subunit bet 21.5 2.7E+02 0.0059 21.7 5.4 28 17-44 3-30 (121)
54 cd07678 F-BAR_FCHSD1 The F-BAR 20.7 1.9E+02 0.0041 26.0 4.9 66 16-81 7-75 (263)
55 PRK13104 secA preprotein trans 20.5 2.4E+02 0.0051 30.0 6.1 46 27-72 620-665 (896)
56 PF06784 UPF0240: Uncharacteri 20.4 50 0.0011 28.0 1.0 33 78-110 41-73 (179)
No 1
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=100.00 E-value=2.7e-58 Score=419.32 Aligned_cols=216 Identities=30% Similarity=0.572 Sum_probs=190.0
Q ss_pred hhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhc----------cccchHHHHH
Q 026110 12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK----------SIPDFWLTAF 81 (243)
Q Consensus 12 ~~e~~~~~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~----------~IP~FW~~vl 81 (243)
+.+.+..||+.+++++.+|+.||.++.++++++.+++++|+++|.++++|+|++|++||+ |||+||++||
T Consensus 28 ~~~~i~~Lp~~~~~rv~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~G~~~~e~~~~gIP~FWl~vL 107 (337)
T PTZ00007 28 DDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALVQNGGAEIGTPGLPQFWLTAM 107 (337)
T ss_pred ccchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCcccccccCCcccHHHHHH
Confidence 446778999999999999999999999999999999999999999999999999999999 7999999999
Q ss_pred hcChhhhccCChhhHHhhcCcceeEEEEccCCC-cceEEEEEecCCCcccCCeEEEEEEeeCCCC---C--ccccccccc
Q 026110 82 ISHPALGELLSEEDQKIFRYLSSLEVEDFKDVK-SGYSITFNFSPNPYFEDNKLTKTFTFLDDDG---S--MKITATSIK 155 (243)
Q Consensus 82 ~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~-~~f~i~F~F~~NpyF~N~~L~K~~~~~~~~g---~--~~~~~t~I~ 155 (243)
+||+.++.+|+++|+++|+||+||+|++..+.. .||+|+|+|++||||+|++|+|+|++...+| + ..+++|+|+
T Consensus 108 ~Nh~~ls~~I~e~De~iL~~L~dI~ve~~~~~~~~gf~I~F~F~~NpyF~N~vLtK~y~~~~~d~~~~p~~~~~~~t~I~ 187 (337)
T PTZ00007 108 KNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILVFTFAPNPFFSNTVLTKTYHMKVLDGDDEPLLSNTVATEID 187 (337)
T ss_pred HcCccHhhhCCHHHHHHHHhhCceEEEEccCCCCCceEEEEEeCCCCCCCCCeEEEEEEeecCCCCCCceeecceeeece
Confidence 999999999999999999999999999886654 8999999999999999999999999864233 2 356899999
Q ss_pred ccCCCCCCCccccccCCCC-----c----cccccccccccccccCCCccC----------------CchhHHHHHHhhcc
Q 026110 156 WKEGMGIPNGVNHEKKGNK-----R----PLAEESFFTWFSDTQEKDTID----------------GIQDEVAEIIKEDL 210 (243)
Q Consensus 156 Wk~gk~lt~~~~~~k~~~~-----r----~~~~~SFF~~F~~~~~~~~~e----------------~~~~ei~~~i~d~i 210 (243)
||+|+++|++.+.+|++++ | +++..|||+||+++..++..+ +.|++||++|+++|
T Consensus 188 WK~GkdlT~k~v~kKqr~K~~~~~r~v~~~~~~~SFFnfF~p~~~p~~~~~e~~~e~~~ee~~~~l~~DyeiG~~ikd~I 267 (337)
T PTZ00007 188 WKQGKDVTKKVVTKKQRHKKTKETRTVTETVDRESFFNFFTSHEVPSDEELEKMSKHEIAELEMIVETDYEIGITIRDKL 267 (337)
T ss_pred eeCCCCchhhhcccccccccCCCceeeccCCCCCChHHhcCCCCCCcccccccccchhHHHHHHHHHHhHHHHHHHHHhc
Confidence 9999999998776554433 2 346799999999987664321 14779999999999
Q ss_pred ccchhhhccccCCCCcc
Q 026110 211 WPNPLTYFNNVIPLPVS 227 (243)
Q Consensus 211 ~p~al~yy~~~~~~~~~ 227 (243)
||+||.||+|+..+..+
T Consensus 268 IP~AV~yftGea~d~~~ 284 (337)
T PTZ00007 268 IPYAVYWFLGEAIDEDS 284 (337)
T ss_pred ccccHHhhCCCcccccc
Confidence 99999999999876554
No 2
>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.9e-57 Score=404.28 Aligned_cols=213 Identities=31% Similarity=0.603 Sum_probs=189.7
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhh-----------------------
Q 026110 14 ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII----------------------- 70 (243)
Q Consensus 14 e~~~~~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI----------------------- 70 (243)
+++..||+.|+++|.+|++||.+..+++.++.+++++||+||.++++|+|+||++||
T Consensus 66 ~~v~~Lp~~Vk~Rv~aLk~lQ~~~~~ie~~F~~e~~~LE~ky~~~yqplfdkR~eIi~g~~EP~eee~e~~~~~~de~~~ 145 (358)
T KOG1507|consen 66 DMVENLPPAVKNRVLALKNLQLECDEIEAKFQEEVHELERKYAKLYQPLFDKRREIINGEVEPTEEEIEWPEEIEDEGNL 145 (358)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhCCccCccccccccccccccccc
Confidence 788999999999999999999999999999999999999999999999999999998
Q ss_pred ------------ccccchHHHHHhcChhhhccCChhhHHhhcCcceeEEEEccCCCcceEEEEEecCCCcccCCeEEEEE
Q 026110 71 ------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTF 138 (243)
Q Consensus 71 ------------~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~i~F~F~~NpyF~N~~L~K~~ 138 (243)
+|||+||+|||+|++.++++|+++|++||+||+||++.+.+++..||+|.|+|++||||+|++|||+|
T Consensus 146 ~e~~~~~~~~d~KGIP~FWLtvlkNvd~lse~I~~~DEpiLk~L~DI~~~~~~~~~~~fklEFhFd~N~YFtN~vLTKTY 225 (358)
T KOG1507|consen 146 AEDTEEAEKEDPKGIPDFWLTVLKNVDLLSEMITERDEPILKYLKDIRLKYSEDGQVGFKLEFHFDPNPYFTNEVLTKTY 225 (358)
T ss_pred ccchhhhccccccCCchHHHHHHhhhhhhhhhcccccHHHHHHHhhhheeeccCCccceEEEEEcCCCccccccceeeee
Confidence 37999999999999999999999999999999999999998867999999999999999999999999
Q ss_pred Eee---CCCCC--------cccccccccccCCCCCCCccccccCCC-----C----ccccccccccccccccCCCccC--
Q 026110 139 TFL---DDDGS--------MKITATSIKWKEGMGIPNGVNHEKKGN-----K----RPLAEESFFTWFSDTQEKDTID-- 196 (243)
Q Consensus 139 ~~~---~~~g~--------~~~~~t~I~Wk~gk~lt~~~~~~k~~~-----~----r~~~~~SFF~~F~~~~~~~~~e-- 196 (243)
++. +.+++ ..|+||.|+|++|||||++.+.+|+.+ . ++++..||||||+++..+++.+
T Consensus 226 ~l~~~~D~~~P~~~~G~~i~~~~Gc~IdW~~gknlT~kti~kKq~~k~~~~~r~vtk~vp~eSFFNFFsPP~ipd~~d~D 305 (358)
T KOG1507|consen 226 FLKSEPDEDDPFAFDGPEIEKCEGCEIDWKPGKNLTVKTIKKKQRNKGTGQVRTVTKTVPNESFFNFFSPPEIPDEEDLD 305 (358)
T ss_pred eeeccCCCcCCcccCCceEEeeecCeeeccCCCccchhhhhhhccccCCCceeeeeecccchhhhhccCCCCCCcccccC
Confidence 998 32333 347999999999999999876654322 2 2468899999999999884321
Q ss_pred C--------chhHHHHHHhhccccchhhhccccCCCCc
Q 026110 197 G--------IQDEVAEIIKEDLWPNPLTYFNNVIPLPV 226 (243)
Q Consensus 197 ~--------~~~ei~~~i~d~i~p~al~yy~~~~~~~~ 226 (243)
+ .|++||+.||+.|||.||.||+|+.-+.+
T Consensus 306 ed~~~~~L~~DyeIG~~lr~~IIPrAV~~fTGea~e~~ 343 (358)
T KOG1507|consen 306 EDDLEELLELDYEIGETLRDKIIPRAVLWFTGEALEDE 343 (358)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhheeeeecccccccc
Confidence 1 46999999999999999999999984443
No 3
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional
Probab=100.00 E-value=3.3e-55 Score=370.96 Aligned_cols=180 Identities=29% Similarity=0.605 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccccchHHHHHhcChhhhccCChhhHHhhcCcceeEEEEccCCCcceE
Q 026110 39 KINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYS 118 (243)
Q Consensus 39 ~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~ 118 (243)
+|+.++.+++++|+++|+++++|+|++|++||+|||+||++||+||+.++ +|+++|+++|+||+||+|++..++..||+
T Consensus 2 ~l~~e~~~e~~~le~ky~~~~~p~y~kR~~II~gIP~FW~~vl~n~~~~~-~I~~~D~~~L~~L~dI~ve~~~~~~~~f~ 80 (185)
T PTZ00008 2 ELDEECAKEQMNIQRQFDEKKKPLFEKRQEIIEKIPGFWADTLRRHPALS-YLVPEDIDILEHLKKIDLEDNLDNNGSYK 80 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhcCccHHHHHHHcCcccc-ccCHHHHHHHHHhCceEEEEeecCCCCEE
Confidence 57889999999999999999999999999999999999999999999999 99999999999999999997555578999
Q ss_pred EEEEecC--CCcccCCeEEEEEEeeCCCCCcccccccccccCCCCCCCccccccCCCCccccccccccccccccCCCccC
Q 026110 119 ITFNFSP--NPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTID 196 (243)
Q Consensus 119 i~F~F~~--NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~lt~~~~~~k~~~~r~~~~~SFF~~F~~~~~~~~~e 196 (243)
|+|+|++ ||||+|++|+|+|++.. ++..++++|+|+||+|+|+|.+...+++..+++.+..|||+||+++..+
T Consensus 81 i~F~F~~~~N~yF~n~~LtK~y~~~~-~~~~~~~~t~I~Wk~gkn~t~~~~kk~~~~~~~~~~~SFF~fF~~~~~~---- 155 (185)
T PTZ00008 81 ITLIFDEKAKEFMEPLVLVKHVIFKN-NQEKVVEVTKIKWKEGKSPIAAAEKARSDLDDECIVWSIFEWFTEEEWQ---- 155 (185)
T ss_pred EEEEECCCCCCCcCCCEEEEEEEEec-CCCceeeeeecccCCCCCcceeeeeccCccccCCCCCChhhcCCCCccc----
Confidence 9999965 89999999999999987 6667889999999999999987655333233456779999999987543
Q ss_pred CchhHHHHHHhhccccchhhhccccCCCC
Q 026110 197 GIQDEVAEIIKEDLWPNPLTYFNNVIPLP 225 (243)
Q Consensus 197 ~~~~ei~~~i~d~i~p~al~yy~~~~~~~ 225 (243)
.+++||++|+++||||||.||+|++.+.
T Consensus 156 -~~~eIg~~i~e~i~P~av~yy~ge~~~~ 183 (185)
T PTZ00008 156 -DRPDVGEIIRREIWHAPLLYYLDTVSID 183 (185)
T ss_pred -CcHHHHHHHHHhhccchHHhhCCccccc
Confidence 5799999999999999999999987653
No 4
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=100.00 E-value=3.1e-54 Score=379.94 Aligned_cols=198 Identities=40% Similarity=0.762 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc-------------------ccchHHHHHhcC
Q 026110 24 VLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS-------------------IPDFWLTAFISH 84 (243)
Q Consensus 24 ~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~-------------------IP~FW~~vl~n~ 84 (243)
++++.+|+.+|.+++.++.++.+++++|+++|.++++|+|++|++||+| ||+||++||.||
T Consensus 1 ~~~i~~L~~~q~~~~~l~~~~~~e~~~le~ky~~~~~pl~~kR~~ii~g~~~~~~~~~~~~~~~~~~gIP~FW~~vl~n~ 80 (244)
T PF00956_consen 1 KQRIEALKKLQEELDELEKEFEEEIHELERKYNKLYKPLYEKRREIINGKREPTEIEWEERQEEKPKGIPGFWLTVLKNH 80 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---HHHH-----SSSTTSTTHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccccccccccccchhhccccCCCCccccccccC
Confidence 5789999999999999999999999999999999999999999999999 999999999999
Q ss_pred hhhhccCChhhHHhhcCcceeEEEEccCCCcceEEEEEecCCCcccCCeEEEEEEeeCCCCC------cccccccccccC
Q 026110 85 PALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGS------MKITATSIKWKE 158 (243)
Q Consensus 85 ~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~i~F~F~~NpyF~N~~L~K~~~~~~~~g~------~~~~~t~I~Wk~ 158 (243)
+.++.+|++.|.++|+||+||+|++..++..+|+|+|+|++||||+|++|+|+|++.. .|. .++++|+|+||+
T Consensus 81 ~~~~~~i~~~D~~iL~~L~dI~v~~~~~~~~~f~l~F~F~~NpyF~n~~L~K~~~~~~-~~~~~~~~~~~~~~t~I~Wk~ 159 (244)
T PF00956_consen 81 PLLAELISEEDEEILSYLTDIRVEYFEDNPRGFKLTFHFKPNPYFSNTVLTKEYYLKK-EGDEEDPDELKSESTPIDWKP 159 (244)
T ss_dssp HHHHTTSSHHHHHHHTTEEEEEEEECCSSTTEEEEEEEECSTSSBSESEEEEEEEEES-SSSTTTT-EEEEEE---EBST
T ss_pred chhhcccccccHHHHHhhhheEEEecccCCcceEEEEEECCCCcccCCEEEEEEEEec-cCCCCCCCcceeeeecccccC
Confidence 9999999999999999999999999987789999999999999999999999999987 443 788999999999
Q ss_pred CCCCCCccccccCCCCc---------cccccccccccccccCCCccC------------CchhHHHHHHhhccccchhhh
Q 026110 159 GMGIPNGVNHEKKGNKR---------PLAEESFFTWFSDTQEKDTID------------GIQDEVAEIIKEDLWPNPLTY 217 (243)
Q Consensus 159 gk~lt~~~~~~k~~~~r---------~~~~~SFF~~F~~~~~~~~~e------------~~~~ei~~~i~d~i~p~al~y 217 (243)
|+++|++...+++++++ ....+|||+||+++..+++.+ ..+++||++|+++|||+||.|
T Consensus 160 gkd~t~~~~~~k~~~k~~~~~~~~~~~~~~~SFF~~F~~~~~~~~~~~e~~~~~~~~~~~~d~ei~~~i~d~i~P~av~y 239 (244)
T PF00956_consen 160 GKDLTKKEVKKKQKNKGTKQVRTITKEVPTESFFNFFSPPKLPDEEDDEEEDEDEEEEIEDDFEIGEIIKDDIIPNAVKY 239 (244)
T ss_dssp TTCTTCCCCECECCSCCCH-ECCCCCCCC--SGGGGSS-B-S--TTTSSSTCHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred CCCccchhhhhcccccccccccceeecccCcchhhhcccCCCCcccccccchhhHHHHhhccHHHHHHHHhheechHHHH
Confidence 99999987655433222 246689999999775543111 148899999999999999999
Q ss_pred ccccC
Q 026110 218 FNNVI 222 (243)
Q Consensus 218 y~~~~ 222 (243)
|+|++
T Consensus 240 y~gea 244 (244)
T PF00956_consen 240 YTGEA 244 (244)
T ss_dssp HHTCT
T ss_pred hCCCC
Confidence 99984
No 5
>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]
Probab=100.00 E-value=2.5e-34 Score=255.24 Aligned_cols=206 Identities=44% Similarity=0.814 Sum_probs=185.3
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccccchHHHHHhcChhhhccCChh
Q 026110 15 NAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEE 94 (243)
Q Consensus 15 ~~~~~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~ 94 (243)
.+.....+++.+++.|++||.+++.++++..+++++++++|...++|+|++|+.||+.||+||.+++.|||.++.+|.+.
T Consensus 22 ~l~~~~~~~~~~~~~l~~i~~e~~~~~~~a~~~~l~l~~~~~~~r~p~~~~r~~ii~~i~~fw~~~~~~hp~~~~~i~~~ 101 (260)
T KOG1508|consen 22 HLSRRGREIEEALETLENIQHELDRMNAKAEVEVLKLEQKFNRFRRPVYEKRRELIKEIPNFWVTAFLNHPTLSEWIPEE 101 (260)
T ss_pred ccccchhHHHhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhCchhhhhhHHHhhcccceeEEEecCCcHhhhhhhh
Confidence 45557789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCcceeEEEEccCCCcceEEEEEecCCCcccCCeEEEEEEeeCCCCCcccccccccccCCCCCCCccccccCCCC
Q 026110 95 DQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNK 174 (243)
Q Consensus 95 D~~iL~~L~dI~Ve~~~d~~~~f~i~F~F~~NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~lt~~~~~~k~~~~ 174 (243)
|.+++.||.++.|+.+.+..+||++.|+|..|+||+|.+++|+|++.. .|..++.+|+|.|+.|+++........-+++
T Consensus 102 ~~e~~~~l~~~~v~e~~~~~sg~~~~~~f~~ney~~~~~~~ke~~~~~-~~~~~s~~t~i~w~~~~~~~~~~~~~~~~~k 180 (260)
T KOG1508|consen 102 DEEALHYLHNLEVEELGDIKSGYRIKFSFEINEYFTNDLLVKEFQYKE-SGKPSSESTPISWKEGKPLPNPVKRGELKNK 180 (260)
T ss_pred hhhhhccchHHHHHHhccccccCeeeeeeccchhcccchhceeeeeec-ccCcccccccccccCCCCCcccccccccccc
Confidence 999999999999999998899999999999999999999999999988 7778889999999999998765542222234
Q ss_pred ccccccccccccccccCCCccCCchhHHHHHHhhccccchhhhccccCCCCc
Q 026110 175 RPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNVIPLPV 226 (243)
Q Consensus 175 r~~~~~SFF~~F~~~~~~~~~e~~~~ei~~~i~d~i~p~al~yy~~~~~~~~ 226 (243)
+.....|||.||+++..++ .++|+++|++++||++++||+......+
T Consensus 181 ~~~~~~s~f~wf~~~~~~~-----~d~i~ei~~~~~~~~~~~~~~~~~~~~~ 227 (260)
T KOG1508|consen 181 NGDGPKSFFEWFSDTSLKE-----FDEILEIIKDELWPNPLQYYLEPDGEEA 227 (260)
T ss_pred cCcccccHHHHHHhccCCC-----ccchhhhhhcccccchhhhhcccccccc
Confidence 4456699999999998774 4489999999999999999987664443
No 6
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=95.86 E-value=0.03 Score=37.37 Aligned_cols=36 Identities=28% Similarity=0.605 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Q 026110 30 LQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDK 65 (243)
Q Consensus 30 L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~k 65 (243)
+.+||..+..++.++++|+-+|.+.|..+++|+.+.
T Consensus 10 ~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIldA 45 (49)
T PF11629_consen 10 YEELQQRLASLDPEMEQEIEELRQRYQAKRQPILDA 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHH
Confidence 466789999999999999999999999999999865
No 7
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=91.93 E-value=0.62 Score=38.04 Aligned_cols=56 Identities=18% Similarity=0.374 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccccch
Q 026110 21 SELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDF 76 (243)
Q Consensus 21 ~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~IP~F 76 (243)
.++-.++..+.++|.++..++.++..++.++...|.....|+-.+...+-.+|-.|
T Consensus 3 ~~a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y 58 (149)
T PF07352_consen 3 EEADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAY 58 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999998888777666555
No 8
>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]
Probab=87.20 E-value=0.014 Score=52.37 Aligned_cols=138 Identities=14% Similarity=0.056 Sum_probs=90.8
Q ss_pred HHHHhhhhhHHhhhhhhccccchHHHHHhcChhhhccCChhhHHhhcCcceeEEEEccCCCcceEEEEEecCCCcccCCe
Q 026110 54 KYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNK 133 (243)
Q Consensus 54 ky~k~~~Ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~i~F~F~~NpyF~N~~ 133 (243)
+-.+.. ++..+|...++.++++|..+=.....+. -..+.++| ...++...|..|+|++++.
T Consensus 15 ~~e~~~-~~l~~~~~~~~~~~~~l~~i~~e~~~~~---~~a~~~~l---------------~l~~~~~~~r~p~~~~r~~ 75 (260)
T KOG1508|consen 15 KMERRK-EHLSRRGREIEEALETLENIQHELDRMN---AKAEVEVL---------------KLEQKFNRFRRPVYEKRRE 75 (260)
T ss_pred cccccc-cccccchhHHHhhhHHHHHHHHHhhhhh---hhhHHHHH---------------HHHHHHHhhhCchhhhhhH
Confidence 333344 8999999999999999987654333222 12222222 2223344567899999999
Q ss_pred EEEEEEeeCCCCC-cccccccccccCCCCCCCccccccCCCCc-cccccccccccccccCCCccCCchhHHHHHHhhccc
Q 026110 134 LTKTFTFLDDDGS-MKITATSIKWKEGMGIPNGVNHEKKGNKR-PLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLW 211 (243)
Q Consensus 134 L~K~~~~~~~~g~-~~~~~t~I~Wk~gk~lt~~~~~~k~~~~r-~~~~~SFF~~F~~~~~~~~~e~~~~ei~~~i~d~i~ 211 (243)
|+|++.=.- +. ...+++.+.|-.+.+.... ... ......|+++++..... ..+++++.+.+++|
T Consensus 76 ii~~i~~fw--~~~~~~hp~~~~~i~~~~~e~~-------~~l~~~~v~e~~~~~sg~~~~-----~~f~~ney~~~~~~ 141 (260)
T KOG1508|consen 76 LIKEIPNFW--VTAFLNHPTLSEWIPEEDEEAL-------HYLHNLEVEELGDIKSGYRIK-----FSFEINEYFTNDLL 141 (260)
T ss_pred HHhhcccce--eEEEecCCcHhhhhhhhhhhhh-------ccchHHHHHHhccccccCeee-----eeeccchhcccchh
Confidence 999963111 11 2347889999887764332 011 13445688888877653 45678889999999
Q ss_pred cchhhhccccCCC
Q 026110 212 PNPLTYFNNVIPL 224 (243)
Q Consensus 212 p~al~yy~~~~~~ 224 (243)
-+.++|+....+-
T Consensus 142 ~ke~~~~~~~~~~ 154 (260)
T KOG1508|consen 142 VKEFQYKESGKPS 154 (260)
T ss_pred ceeeeeecccCcc
Confidence 9999999987743
No 9
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=83.48 E-value=2.8 Score=34.20 Aligned_cols=58 Identities=17% Similarity=0.379 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccccch
Q 026110 19 IDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDF 76 (243)
Q Consensus 19 ~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~IP~F 76 (243)
--.+|...+..|-+||.|...|+.++-.++.+++..|..+..|+-+.-..+.++|..+
T Consensus 16 ~~eeV~~~Ir~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~k~vq~y 73 (170)
T COG4396 16 DKEEVTAFIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLTKRVQAY 73 (170)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999998877777777765
No 10
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner. This domain is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.; GO: 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 2IPC_D 3JUX_A 3DIN_B ....
Probab=66.18 E-value=20 Score=30.77 Aligned_cols=45 Identities=22% Similarity=0.459 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 026110 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (243)
Q Consensus 28 ~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~ 72 (243)
.++...|+..+..+-..-+.+++...=-+.+++-+|.+|+.|+.+
T Consensus 9 ~~Ie~aQkkvE~~nf~~Rk~lleyD~Vl~~QR~~IY~~R~~iL~~ 53 (214)
T PF07516_consen 9 KSIEKAQKKVEGRNFDIRKNLLEYDDVLNQQRKVIYKQRDKILEG 53 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 466778999999999999999999999999999999999999976
No 11
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=48.83 E-value=22 Score=33.21 Aligned_cols=37 Identities=27% Similarity=0.548 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Q 026110 29 KLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDK 65 (243)
Q Consensus 29 ~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~k 65 (243)
.|.+||..+-.++-...+++.+|.++|..+++|+|..
T Consensus 455 ~~e~Lq~rl~alDpmme~eieelrq~y~skrqpIlda 491 (502)
T KOG0574|consen 455 TLEELQMRLKALDPMMEREIEELRQRYTSKRQPILDA 491 (502)
T ss_pred cHHHHHHHHHhcCHHHHHHHHHHHHHHhhccccHHHH
Confidence 5788999999999999999999999999999999964
No 12
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=45.79 E-value=64 Score=23.77 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=24.9
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026110 15 NAEQIDSELVLSIEKLQEIQDELEKINEEA 44 (243)
Q Consensus 15 ~~~~~~~~v~~~~~~L~~lQ~el~~le~e~ 44 (243)
....|...++++++.+.-||.|++.+.++.
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn 34 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKN 34 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999999999999987664
No 13
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.18 E-value=78 Score=28.60 Aligned_cols=35 Identities=14% Similarity=0.368 Sum_probs=23.6
Q ss_pred hhhhhHHhhhhhh--ccccchHHHHHhcChhhhccCC
Q 026110 58 IRKPVYDKRNDII--KSIPDFWLTAFISHPALGELLS 92 (243)
Q Consensus 58 ~~~Ply~kR~eiI--~~IP~FW~~vl~n~~~l~~~i~ 92 (243)
.++-+|.+|..-+ .|=-.+...|+.+..-|+++|+
T Consensus 98 ~r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~Is 134 (265)
T COG3883 98 ERQELLKKRARAMQVNGTATSYIDVILNSKSFSDLIS 134 (265)
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHH
Confidence 3445566654433 4566667899999888887776
No 14
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=42.36 E-value=1.2e+02 Score=27.76 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=16.7
Q ss_pred ccCChhhHHhhcCcceeEEEEc
Q 026110 89 ELLSEEDQKIFRYLSSLEVEDF 110 (243)
Q Consensus 89 ~~i~~~D~~iL~~L~dI~Ve~~ 110 (243)
+-+.+.|..|=+|..||.+...
T Consensus 138 ssL~ekDkGiQKYFvDINiQN~ 159 (305)
T PF15290_consen 138 SSLAEKDKGIQKYFVDINIQNK 159 (305)
T ss_pred hhhchhhhhHHHHHhhhhhhHh
Confidence 3445789999999999988743
No 15
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=42.22 E-value=70 Score=23.93 Aligned_cols=57 Identities=9% Similarity=0.366 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccccc
Q 026110 19 IDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPD 75 (243)
Q Consensus 19 ~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~IP~ 75 (243)
+-.........+..++.....++.+.......+...|..++.-+-+++..++..|-.
T Consensus 12 l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~ 68 (127)
T smart00502 12 LRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEE 68 (127)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666667777777888888888889999999998888888888865544
No 16
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=41.93 E-value=53 Score=24.33 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=41.3
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hHHhhhhhhccccchHHHHHh
Q 026110 14 ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKP---VYDKRNDIIKSIPDFWLTAFI 82 (243)
Q Consensus 14 e~~~~~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~P---ly~kR~eiI~~IP~FW~~vl~ 82 (243)
|.++.||.++++.+..+..+..+...+-.+. .+.-.+|.+.... -=+++...++.|-.=+..++.
T Consensus 8 d~~~~LP~el~r~l~~irelD~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~ 75 (105)
T PF12998_consen 8 DSLENLPAELQRNLTLIRELDAKSQDLLEEL----DQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALE 75 (105)
T ss_dssp TSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHHHHHHHhhhhHHHHHHHH----HHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999988887755554433 3344444443322 112666777777666665554
No 17
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.06 E-value=1.1e+02 Score=22.10 Aligned_cols=65 Identities=17% Similarity=0.370 Sum_probs=40.1
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccccchHHHHH
Q 026110 15 NAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAF 81 (243)
Q Consensus 15 ~~~~~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~IP~FW~~vl 81 (243)
..+.|...++++++.+.-||.|++.+-++... +.-+..-....+.-++++++-++.--.=|-.-+
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn~--l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNS--LSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999999999988665431 111111112333445566666665556665444
No 18
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=38.09 E-value=1.1e+02 Score=24.26 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=23.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 026110 17 EQIDSELVLSIEKLQEIQDELEKINEE 43 (243)
Q Consensus 17 ~~~~~~v~~~~~~L~~lQ~el~~le~e 43 (243)
+.+||++++.+..+..+|.++..+-.+
T Consensus 2 ~~lpp~~q~~l~q~QqLq~ql~~~~~q 28 (119)
T COG1382 2 EQLPPEVQAQLAQLQQLQQQLQKVILQ 28 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999887644
No 19
>COG1507 Uncharacterized conserved protein [Function unknown]
Probab=34.25 E-value=1.7e+02 Score=24.23 Aligned_cols=60 Identities=17% Similarity=0.291 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhc--------cccchHHHHH
Q 026110 19 IDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK--------SIPDFWLTAF 81 (243)
Q Consensus 19 ~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~--------~IP~FW~~vl 81 (243)
+.|.+.+++..|+. |-=+.+++++..+ --+|...|.+....+..+|++|.. |+|++ ..||
T Consensus 55 t~P~L~kaaSrLEs-~gymkem~erl~~-d~eL~~~~~raHe~~lkkR~~i~~~~t~~~~gGm~D~-vkCl 122 (167)
T COG1507 55 THPVLTKAASRLES-TGYMKEMTERLGQ-DEELRAFYRRAHESYLKKRDAIEPLGTTVSGGGMPDR-VKCL 122 (167)
T ss_pred cChHHHHHHHHHHH-hhHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHhhcccCCeecCCCcchH-HHHH
Confidence 44777777777752 2222222222211 135778898999999999999984 79999 4444
No 20
>KOG3891 consensus Secretory vesicle-associated protein ICA69, contains Arfaptin domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.94 E-value=61 Score=30.53 Aligned_cols=87 Identities=17% Similarity=0.294 Sum_probs=59.2
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhc--------cccchHHHHHhcChhh
Q 026110 16 AEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK--------SIPDFWLTAFISHPAL 87 (243)
Q Consensus 16 ~~~~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~--------~IP~FW~~vl~n~~~l 87 (243)
-..|+|++-+.+++....|......-+-+.+--+..-+|-+ -+=.-|.-+++ .+-+||..+-+....|
T Consensus 173 SqELDPdt~k~meKFRkaQt~Vr~aK~nfDklkmD~~QKVD----LL~AsRcNllSh~Lt~YqteL~~f~~Kta~tf~ti 248 (436)
T KOG3891|consen 173 SQELDPDTDKQMEKFRKAQTQVRSAKENFDKLKMDVCQKVD----LLGASRCNLLSHVLTTYQTELLEFWSKTARTFETI 248 (436)
T ss_pred HhhcCcchhhHHHHHHHHHHHHHHHHhccchhhhHHHHHHh----HhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999998877666555543333333332 23344555543 4689998877766666
Q ss_pred hccC---ChhhHHhhcCcceeE
Q 026110 88 GELL---SEEDQKIFRYLSSLE 106 (243)
Q Consensus 88 ~~~i---~~~D~~iL~~L~dI~ 106 (243)
++.+ .+.|..+|++|.+=.
T Consensus 249 ~ea~~~y~~YdF~~Lk~L~~~~ 270 (436)
T KOG3891|consen 249 HEACIGYNPYDFEILKHLQDGT 270 (436)
T ss_pred HHHhcCCCccchHHHHHhccCC
Confidence 6443 489999999998643
No 21
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=31.67 E-value=17 Score=22.99 Aligned_cols=14 Identities=36% Similarity=0.629 Sum_probs=12.0
Q ss_pred ccccccccCCCCCC
Q 026110 150 TATSIKWKEGMGIP 163 (243)
Q Consensus 150 ~~t~I~Wk~gk~lt 163 (243)
..||.+|++|.++.
T Consensus 10 v~tPanW~pGd~~i 23 (40)
T PF10417_consen 10 VATPANWKPGDDVI 23 (40)
T ss_dssp SBBCTTTCTTSGEB
T ss_pred cccCcCCCCCCCeE
Confidence 57999999999854
No 22
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=31.28 E-value=1.9e+02 Score=21.98 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhh
Q 026110 21 SELVLSIEKLQEIQDELEKINEE-----------ASEKVLEVEQKYSEIRK 60 (243)
Q Consensus 21 ~~v~~~~~~L~~lQ~el~~le~e-----------~~~e~~~le~ky~k~~~ 60 (243)
+++..-.+.|..|+.+++.++.. ..+++..++.+|+++++
T Consensus 53 ~~~~~Y~~Gl~~li~~id~a~~~~~~G~l~~AK~~l~~l~~lR~eyHkk~r 103 (103)
T PF07361_consen 53 AEVKDYQEGLDKLIDQIDKAEALAEAGKLDEAKAALKKLDDLRKEYHKKFR 103 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhHhcC
Confidence 34445566666666666665543 34566777888887654
No 23
>PRK14145 heat shock protein GrpE; Provisional
Probab=30.35 E-value=2.3e+02 Score=24.38 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=31.5
Q ss_pred CCCCccccchhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhh
Q 026110 1 MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII 70 (243)
Q Consensus 1 ~~~~~~~~~~~~~e~~~~~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI 70 (243)
|-+|+.--+..+.......+.++...-..|..++.++..+..++ +++...+...++-.-..|.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~e~~~l~~~l~~le~e~~el~d~~----lR~~AEfeN~rkR~~kE~e~~~ 90 (196)
T PRK14145 25 MEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQEYLDIA----QRLKAEFENYRKRTEKEKSEMV 90 (196)
T ss_pred cCCCcHHHHHhhcccccCchhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443433334444555555444455666666666555554 3444444444433334444433
No 24
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=30.16 E-value=1.1e+02 Score=31.69 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 026110 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (243)
Q Consensus 27 ~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~ 72 (243)
-..+...|...+..+-...+.+++...--+++++-+|.+|++++.+
T Consensus 550 ~~~~~~aQ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iY~~R~~il~~ 595 (745)
T TIGR00963 550 TRALESAQKRVEARNFDIRKQLLEYDDVLNKQREVIYAERRRILES 595 (745)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHcc
Confidence 4567778999999999999999999999999999999999999965
No 25
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=29.65 E-value=79 Score=22.32 Aligned_cols=11 Identities=36% Similarity=0.528 Sum_probs=6.4
Q ss_pred CCC-ccccchhh
Q 026110 2 VAD-KGKKTKVE 12 (243)
Q Consensus 2 ~~~-~~~~~~~~ 12 (243)
.|| ++|.+|.+
T Consensus 19 ~aP~sG~e~R~~ 30 (74)
T PF12732_consen 19 FAPKSGKETREK 30 (74)
T ss_pred hCCCCcHHHHHH
Confidence 466 56666654
No 26
>PRK01546 hypothetical protein; Provisional
Probab=28.76 E-value=1.1e+02 Score=22.56 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 026110 19 IDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVY 63 (243)
Q Consensus 19 ~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply 63 (243)
+++++..+|+.|...+.+ ..|..+-..|..+|+++|.+..+--+
T Consensus 2 ~~~~~i~RINeLakK~K~-~gLT~eEk~Eq~~LR~eYl~~fR~~~ 45 (79)
T PRK01546 2 LSHELVERINFLAKKAKA-EGLTEEEQRERQSLREQYLKGFRQNM 45 (79)
T ss_pred CcHHHHHHHHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999998876 44555556677788888876555433
No 27
>PF05979 DUF896: Bacterial protein of unknown function (DUF896); InterPro: IPR009242 This family consists of several short, hypothetical bacterial proteins of unknown function. They may be involved in the bacterial SOS response [].; PDB: 2HEP_A 3BHP_C 2JVD_A.
Probab=28.23 E-value=2e+02 Score=20.37 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 026110 22 ELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVY 63 (243)
Q Consensus 22 ~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply 63 (243)
++..+|+.|...+++- -|..+-..|..+|+++|.+..+--+
T Consensus 2 e~i~RINeLa~K~K~~-gLT~eE~~Eq~~LR~eYl~~fR~~~ 42 (65)
T PF05979_consen 2 EKIDRINELAKKSKEE-GLTEEEKAEQAELRQEYLQNFRGNF 42 (65)
T ss_dssp HHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHTTHHHH
T ss_pred cHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999888743 3555556677788888877666444
No 28
>PRK02539 hypothetical protein; Provisional
Probab=28.03 E-value=1.2e+02 Score=22.67 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 026110 20 DSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVY 63 (243)
Q Consensus 20 ~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply 63 (243)
+.++..+|+.|...+++ ..|..+-..|..+|+++|.+..+--+
T Consensus 2 ~~~~I~RINeLakK~K~-~gLT~eEk~Eq~~LR~eYl~~fR~~~ 44 (85)
T PRK02539 2 DPKKIARINELAKKKKT-EGLTGEEKVEQAKLREEYIEGYRRSV 44 (85)
T ss_pred CHHHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999988876 44555556677788888876665444
No 29
>PRK13611 photosystem II reaction center protein Psb28; Provisional
Probab=27.79 E-value=2.1e+02 Score=22.16 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=38.9
Q ss_pred cceeEEEEccCCCcceEEEEEec-CCCcccCCeEEEEEEeeCCCCCcccccccccccCCCC
Q 026110 102 LSSLEVEDFKDVKSGYSITFNFS-PNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMG 161 (243)
Q Consensus 102 L~dI~Ve~~~d~~~~f~i~F~F~-~NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~ 161 (243)
+.+|++....| ...=+.+|.|. ++. ....++- ..+.+++|..+......+.-+|+.
T Consensus 14 ~p~VrLtRsrd-g~~g~a~f~F~~~~~--~~~~itg-m~liDeEGei~tr~v~~KFvnGkp 70 (104)
T PRK13611 14 PTQVRLLKSKT-GKRGSAIFRFEDLKS--DTQNILG-MRMIDEEGELTTRNIKAKFLNGEF 70 (104)
T ss_pred CCceEEEEccC-CCccEEEEEEcCCcc--cccceee-EEEEccCCcEEEEecceEEECCCc
Confidence 78999998877 45567899995 455 3356676 445454888666666666767775
No 30
>PRK11546 zraP zinc resistance protein; Provisional
Probab=27.14 E-value=1.6e+02 Score=24.07 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=0.0
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhh
Q 026110 15 NAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDI 69 (243)
Q Consensus 15 ~~~~~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~ei 69 (243)
+...|++|. |.+++++..++..+...|+++ ++.+|.|+
T Consensus 40 ~~~~LT~EQ----------Qa~~q~I~~~f~~~t~~LRqq-------L~aKr~EL 77 (143)
T PRK11546 40 NAAPLTTEQ----------QAAWQKIHNDFYAQTSALRQQ-------LVSKRYEY 77 (143)
T ss_pred ccccCCHHH----------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
No 31
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=26.93 E-value=1.7e+02 Score=21.72 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=22.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 026110 17 EQIDSELVLSIEKLQEIQDELEKINEE 43 (243)
Q Consensus 17 ~~~~~~v~~~~~~L~~lQ~el~~le~e 43 (243)
..+|+.+++-+..++.+..++..++.+
T Consensus 50 ~~lp~~~keLL~EIA~lE~eV~~LE~~ 76 (88)
T PF14389_consen 50 SSLPKKAKELLEEIALLEAEVAKLEQK 76 (88)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999888888777644
No 32
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=26.26 E-value=1.6e+02 Score=30.71 Aligned_cols=47 Identities=28% Similarity=0.354 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccc
Q 026110 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSI 73 (243)
Q Consensus 27 ~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~I 73 (243)
-..+...|...+..+-+..+.+++...--+++++-+|++|++|+.+-
T Consensus 574 ~~~i~~aQ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iy~~R~~il~~~ 620 (762)
T TIGR03714 574 RKIVEKAQRASEDKGESAREQTNEFEESLSIQRENIYAERNRLIEGS 620 (762)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45677789999999999999999999999999999999999999653
No 33
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=24.96 E-value=2.3e+02 Score=27.98 Aligned_cols=68 Identities=24% Similarity=0.347 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh----hhh---hhccccchHHHHHhcChhhh
Q 026110 21 SELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDK----RND---IIKSIPDFWLTAFISHPALG 88 (243)
Q Consensus 21 ~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~k----R~e---iI~~IP~FW~~vl~n~~~l~ 88 (243)
|.+++.+.++.+.+.+..+-+.++.+-....+.+|.+..+-+=-+ |.| +++.+|.++..+......+.
T Consensus 127 P~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~G~nir~ELl~l~~~LP~~~~~i~~~i~~l~ 201 (507)
T PF05600_consen 127 PALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIKGENIREELLELVKELPSLFDEIVEAISDLQ 201 (507)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999998877543211 344 34678888877665544343
No 34
>PRK14082 hypothetical protein; Provisional
Probab=24.52 E-value=76 Score=22.49 Aligned_cols=9 Identities=33% Similarity=1.103 Sum_probs=7.1
Q ss_pred hccccchHH
Q 026110 70 IKSIPDFWL 78 (243)
Q Consensus 70 I~~IP~FW~ 78 (243)
-..+||||-
T Consensus 54 ~~e~PGF~e 62 (65)
T PRK14082 54 CQEVPGFWE 62 (65)
T ss_pred cccCCcHHH
Confidence 367999995
No 35
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=24.47 E-value=1.8e+02 Score=30.63 Aligned_cols=46 Identities=24% Similarity=0.465 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 026110 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (243)
Q Consensus 27 ~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~ 72 (243)
-..+...|...+..+-...+.+++...--+++++-+|.+|+.|+.+
T Consensus 606 ~~~i~~aQ~~~e~~~~~~Rk~~l~yd~v~~~QR~~iY~~R~~iL~~ 651 (830)
T PRK12904 606 TRAIENAQKKVEGRNFDIRKQLLEYDDVMNDQRKVIYAQRNEILEG 651 (830)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4466678999999999999999999999999999999999999975
No 36
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=24.45 E-value=2.7e+02 Score=19.93 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=22.7
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 026110 16 AEQIDSELVLSIEKLQEIQDELEKINEE 43 (243)
Q Consensus 16 ~~~~~~~v~~~~~~L~~lQ~el~~le~e 43 (243)
...|...+.++++.+..||.+++.+..+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677899999999999999888764
No 37
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=24.45 E-value=1.7e+02 Score=30.42 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 026110 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (243)
Q Consensus 27 ~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~ 72 (243)
-..+...|+..+..+-...+.+++...--+++++-+|++|+.|+.+
T Consensus 576 ~~~i~~aQk~vE~~~~~~Rk~~~~yd~v~~~QR~~iy~~R~~il~~ 621 (764)
T PRK12326 576 ADLVDHAQRVAEGQLLEIHANTWRYNQLIAQQRAIIVERRERLLRT 621 (764)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4556678999999998888999998888899999999999999965
No 38
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=24.32 E-value=52 Score=25.07 Aligned_cols=69 Identities=28% Similarity=0.500 Sum_probs=31.6
Q ss_pred HHhcChhhhccCChhhHHh--hcCcceeEEEEccCCCcceEEEEEe--cCCCcccCCeEEEEEEeeCCCCCccccccccc
Q 026110 80 AFISHPALGELLSEEDQKI--FRYLSSLEVEDFKDVKSGYSITFNF--SPNPYFEDNKLTKTFTFLDDDGSMKITATSIK 155 (243)
Q Consensus 80 vl~n~~~l~~~i~~~D~~i--L~~L~dI~Ve~~~d~~~~f~i~F~F--~~NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~ 155 (243)
+|..||.-+-+-.+.+-.. -.|++.|+|...+ ..-+++.+.. ++||||+ |.+.. .+. -.-.+.
T Consensus 19 ~li~HPMetGl~~d~tg~~iPa~~I~~v~v~~ng--~~v~~~~~~~siS~NP~l~-------F~~~~-~~~---g~l~v~ 85 (100)
T PF08770_consen 19 ALISHPMETGLRKDQTGKYIPAHFIEEVEVTYNG--KPVFRADWGPSISENPYLR-------FSFKG-KKS---GTLTVT 85 (100)
T ss_dssp EEE----B-S-BB-TTS-BB--B-EEEEEEEETT--EEEEEEEE-TTB-SS-EEE-------EEEEE-SSS---EEEEEE
T ss_pred EEEECCCccccccCCCCCCCChHheEEEEEEECC--EEEEEEEeCCcccCCCcEE-------EEEec-CCC---cEEEEE
Confidence 3455664443322222111 3699999999643 4566666666 6899984 44433 111 123677
Q ss_pred ccCCCC
Q 026110 156 WKEGMG 161 (243)
Q Consensus 156 Wk~gk~ 161 (243)
|.+++.
T Consensus 86 ~~Dn~G 91 (100)
T PF08770_consen 86 WTDNKG 91 (100)
T ss_dssp EEETTS
T ss_pred EEECCC
Confidence 877653
No 39
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=23.96 E-value=1.8e+02 Score=31.00 Aligned_cols=46 Identities=17% Similarity=0.403 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 026110 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (243)
Q Consensus 27 ~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~ 72 (243)
-..|...|+..+..+-...+.+++...--+++++-+|.+|++++.+
T Consensus 721 ~k~ie~AQkkvE~~nf~iRK~ll~YD~Vln~QR~~IY~~R~~iL~~ 766 (939)
T PRK12902 721 TRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEG 766 (939)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4567778999999999999999999888999999999999999965
No 40
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=23.70 E-value=1.8e+02 Score=30.35 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccc
Q 026110 26 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSI 73 (243)
Q Consensus 26 ~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~I 73 (243)
....|...|...+..+-...+.+++...--+.+++-+|.+|+.++.+-
T Consensus 576 ~~~~~~~aQ~~~e~~~~~~R~~~~~~d~~~~~QR~~iy~~R~~~l~~~ 623 (790)
T PRK09200 576 VHKIVVKAQRISEGAGYSAREYALELDDVINIQRDVVYKERNRLLEED 623 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345667789999999999999999999999999999999999999764
No 41
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=23.56 E-value=2.7e+02 Score=23.38 Aligned_cols=39 Identities=38% Similarity=0.451 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026110 22 ELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRK 60 (243)
Q Consensus 22 ~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~ 60 (243)
+....+..|..+|.+..+.-.+..+++.++-..|++...
T Consensus 123 ~~~~kL~~L~~~~~~Q~e~~~~ls~~~~~Ll~~YN~ii~ 161 (174)
T PF07426_consen 123 ELCDKLQKLSQIHLEQQEESEELSEEVQELLQQYNKIIL 161 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344778888888888888777888888888888887654
No 42
>PRK01631 hypothetical protein; Provisional
Probab=23.46 E-value=1.4e+02 Score=21.78 Aligned_cols=41 Identities=10% Similarity=0.268 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 026110 22 ELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVY 63 (243)
Q Consensus 22 ~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply 63 (243)
++..+|+.|...+.+ ..|..+-..|..+|+++|.+..+-.+
T Consensus 3 ~ii~RINeLakK~K~-~gLT~eE~~Eq~~LR~eYl~~fR~~~ 43 (76)
T PRK01631 3 NILFRINELSKKEKA-TGLTVDEKQEQQMLRQNYTQTFRGSL 43 (76)
T ss_pred hHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999988876 44555556677788888876655443
No 43
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=23.40 E-value=1.9e+02 Score=30.66 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 026110 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (243)
Q Consensus 27 ~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~ 72 (243)
-.++...|+..+..+-...+.+++...--+++++-+|.+|++++.+
T Consensus 570 ~~~ie~AQkkvE~~nfdiRK~ll~yDdV~n~QR~~IY~~R~~iL~~ 615 (925)
T PRK12903 570 SKALLNAQKKIEGFNFDTRKNVLDYDDVIRQQRDLIYAQRDLILIA 615 (925)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4466678999999998888888888888899999999999999965
No 44
>PF06708 DUF1195: Protein of unknown function (DUF1195); InterPro: IPR010608 This family consists of several plant specific hypothetical proteins of around 160 residues in length. The function of this family is unknown.
Probab=23.16 E-value=71 Score=26.16 Aligned_cols=21 Identities=33% Similarity=0.736 Sum_probs=14.8
Q ss_pred hhHHhhhhhhccccchHHHHHhc
Q 026110 61 PVYDKRNDIIKSIPDFWLTAFIS 83 (243)
Q Consensus 61 Ply~kR~eiI~~IP~FW~~vl~n 83 (243)
-+|-+-+ =.++|.||..||..
T Consensus 99 DvYt~s~--~vrLPrFWqEAFeA 119 (157)
T PF06708_consen 99 DVYTRSR--RVRLPRFWQEAFEA 119 (157)
T ss_pred HHhcCCC--CccCchHHHHHHHH
Confidence 3554433 35789999999975
No 45
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=22.53 E-value=2e+02 Score=30.07 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 026110 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (243)
Q Consensus 27 ~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~ 72 (243)
...+...|...+..+-...+.+++...--+.+++-+|.+|+.++.+
T Consensus 587 ~~~i~~aQ~~~e~~~~~~Rk~l~~~d~v~~~QR~~iY~~R~~il~~ 632 (796)
T PRK12906 587 TRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIYKQRMQVINE 632 (796)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4456678999999998888999999999999999999999999976
No 46
>PF14992 TMCO5: TMCO5 family
Probab=22.33 E-value=2.5e+02 Score=25.56 Aligned_cols=55 Identities=18% Similarity=0.436 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh---hhhh--------------ccccchHHHHHhc
Q 026110 26 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR---NDII--------------KSIPDFWLTAFIS 83 (243)
Q Consensus 26 ~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR---~eiI--------------~~IP~FW~~vl~n 83 (243)
....+..+|..+..+++ ++++.-|+++-.+.. --..++ ..+. ++-|-||.++|+=
T Consensus 149 q~~~i~klkE~L~rmE~--ekE~~lLe~el~k~q-~~~s~~~~~~~~~~e~~~~~~e~~~~~~~~~~~wkr~lr~ 220 (280)
T PF14992_consen 149 QANEIKKLKEKLRRMEE--EKEMLLLEKELSKYQ-MQDSQSEKPGSELVETIQPNMEKTSLKKNSPTFWKRALRL 220 (280)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh-chhhchhccCchhhhhhhccCCcccHHhhhhHHHHHHHHH
Confidence 34455666777777765 667777766643322 223333 1111 2458899998864
No 47
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=22.28 E-value=2.4e+02 Score=23.40 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026110 24 VLSIEKLQEIQDELEKINEEASEKV 48 (243)
Q Consensus 24 ~~~~~~L~~lQ~el~~le~e~~~e~ 48 (243)
++.-.+++.+|-|++++.+++..+.
T Consensus 25 ~~~~~km~~i~P~~~~i~~k~k~~~ 49 (181)
T TIGR03592 25 YKSMRKMQELQPKLKEIQEKYKDDP 49 (181)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhH
Confidence 4555666777777777777765443
No 48
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=22.21 E-value=2.1e+02 Score=27.31 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=22.5
Q ss_pred hhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026110 13 EENAEQIDSELVLSIEKLQEIQDELEKINEEAS 45 (243)
Q Consensus 13 ~e~~~~~~~~v~~~~~~L~~lQ~el~~le~e~~ 45 (243)
.|.+-.+..+-++...++.+|+.+..++.++..
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~ 59 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIG 59 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556667777777777777777777666554
No 49
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=22.03 E-value=2.1e+02 Score=30.31 Aligned_cols=47 Identities=23% Similarity=0.425 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccc
Q 026110 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSI 73 (243)
Q Consensus 27 ~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~I 73 (243)
...+...|...+..+-...+.+++...--+++++-+|.+|++++.+-
T Consensus 663 ~~~i~~aQ~~vE~~~~~~Rk~ll~yD~v~~~QR~~iY~~R~~iL~~~ 709 (870)
T CHL00122 663 SKSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILESQ 709 (870)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44667789999999999999999999999999999999999999764
No 50
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.87 E-value=3.2e+02 Score=23.20 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=23.0
Q ss_pred ccchhhhhhc---cCCCHHHHHHH-HHHHHHHHHHHHHH
Q 026110 7 KKTKVEEENA---EQIDSELVLSI-EKLQEIQDELEKIN 41 (243)
Q Consensus 7 ~~~~~~~e~~---~~~~~~v~~~~-~~L~~lQ~el~~le 41 (243)
|++-+|.|-+ ..||++|+..+ .+|.+|+.+++.-+
T Consensus 30 K~qiRd~eRlLkk~~LP~~Vr~e~er~L~~Lk~ql~~~~ 68 (199)
T KOG4484|consen 30 KNQIRDLERLLKKKDLPPEVREELERKLQDLKKQLDNHE 68 (199)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333454433 56999997655 57888888887654
No 51
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=21.66 E-value=2.1e+02 Score=30.34 Aligned_cols=46 Identities=24% Similarity=0.419 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 026110 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (243)
Q Consensus 27 ~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~ 72 (243)
-..+...|+..+..+-...+.+++...--+++++-+|.+|++++.+
T Consensus 624 ~~~i~~aQk~vE~~~~~~Rk~ll~yD~Vln~QR~~IY~~R~~iL~~ 669 (913)
T PRK13103 624 TNAIEKAQRKVEGRNFDIRKQLLEFDDVANEQRKVIYHMRNSLLAA 669 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3566678999999998889999999999999999999999999975
No 52
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=21.51 E-value=1.9e+02 Score=29.42 Aligned_cols=43 Identities=28% Similarity=0.375 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhh
Q 026110 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII 70 (243)
Q Consensus 28 ~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI 70 (243)
+.++.||.|+-..+.++++++-++|++...+++-+..+-+.-|
T Consensus 233 e~i~~LQeE~l~tQ~kYQreLErlEKENkeLr~lll~kd~k~i 275 (980)
T KOG0447|consen 233 EKIDQLQEELLHTQLKYQRILERLEKENKELRKLVLQKDDKGI 275 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccchhh
Confidence 4567789999999999999999999998888877777665544
No 53
>PRK09343 prefoldin subunit beta; Provisional
Probab=21.46 E-value=2.7e+02 Score=21.75 Aligned_cols=28 Identities=29% Similarity=0.534 Sum_probs=24.3
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026110 17 EQIDSELVLSIEKLQEIQDELEKINEEA 44 (243)
Q Consensus 17 ~~~~~~v~~~~~~L~~lQ~el~~le~e~ 44 (243)
..+|++++.-+..+..+|.++..+..+.
T Consensus 3 ~~~~~~~q~~~~~~q~lq~~l~~~~~q~ 30 (121)
T PRK09343 3 ENIPPEVQAQLAQLQQLQQQLERLLQQK 30 (121)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999887553
No 54
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.70 E-value=1.9e+02 Score=26.04 Aligned_cols=66 Identities=11% Similarity=0.155 Sum_probs=40.4
Q ss_pred ccCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccccchHHHHH
Q 026110 16 AEQIDSELVLSIEKLQEIQ---DELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAF 81 (243)
Q Consensus 16 ~~~~~~~v~~~~~~L~~lQ---~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~IP~FW~~vl 81 (243)
+..|...++..++-|++++ .+..++|.++.+.+.+|-.+|..+..|--..-.+--..+..||....
T Consensus 7 ~~~L~~~~~~~~~~le~~~~f~k~R~~iE~eYa~~L~~L~k~~~~k~~~~~~~e~~~~~~~~s~~~~~~ 75 (263)
T cd07678 7 LSILQTKQQRDAELLEDIRSYSKQRAAIEREYGQALQRLASQFLKRDWHRGGNETEMDRSVRTVWGAWR 75 (263)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCchhhhhccccchHHHHHH
Confidence 3444455555555555554 67888888888888888888877664310110112346788886644
No 55
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=20.52 E-value=2.4e+02 Score=29.99 Aligned_cols=46 Identities=17% Similarity=0.360 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 026110 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (243)
Q Consensus 27 ~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~ 72 (243)
-..+...|+..+..+-...+.+++...--+++++-+|.+|+.++.+
T Consensus 620 ~~~i~~aQ~~vE~~~~~~Rk~ll~yd~V~n~QR~~iY~~R~~iL~~ 665 (896)
T PRK13104 620 TRAIENAQRKLEGHHFDVRKQLLDYDNVANDQRQVIYTQRASIMAM 665 (896)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456678999999998888999999999999999999999999965
No 56
>PF06784 UPF0240: Uncharacterised protein family (UPF0240); InterPro: IPR009622 This is a group of proteins of unknown function.
Probab=20.42 E-value=50 Score=27.96 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=29.2
Q ss_pred HHHHhcChhhhccCChhhHHhhcCcceeEEEEc
Q 026110 78 LTAFISHPALGELLSEEDQKIFRYLSSLEVEDF 110 (243)
Q Consensus 78 ~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~ 110 (243)
..++..+|.+..-+...|..+++.|++|.|+..
T Consensus 41 ~~~~~~~pe~~eei~~Kd~~L~s~LK~VyV~S~ 73 (179)
T PF06784_consen 41 EEVLEDDPEIKEEISRKDDKLLSRLKDVYVTSK 73 (179)
T ss_pred HHHhhhChHHHHHHHhhhHHHHHhhceeEeecC
Confidence 456788999999999999999999999999955
Done!