Query 026110
Match_columns 243
No_of_seqs 143 out of 594
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 05:51:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e50_A Protein SET; histone ch 100.0 2.4E-63 8.3E-68 431.6 15.8 214 1-220 1-222 (225)
2 3fs3_A Nucleosome assembly pro 100.0 4.1E-59 1.4E-63 425.6 18.9 217 12-228 40-299 (359)
3 3kyp_A Pfnaps, nucleosome asse 100.0 2.3E-59 8E-64 398.3 11.0 189 27-222 2-192 (193)
4 2ayu_A Nucleosome assembly pro 100.0 5.7E-57 2E-61 420.5 18.5 210 13-222 82-364 (417)
5 2zd7_A VPS75, vacuolar protein 100.0 4.7E-53 1.6E-57 374.9 15.3 196 29-224 10-222 (264)
6 2jo8_A Serine/threonine-protei 94.3 0.099 3.4E-06 34.4 5.4 37 30-66 12-48 (51)
7 2p2u_A HOST-nuclease inhibitor 92.9 0.21 7.2E-06 40.8 6.4 57 20-76 15-71 (171)
8 2zd7_A VPS75, vacuolar protein 72.4 8.4 0.00029 33.3 6.7 45 21-65 9-53 (264)
9 2k48_A Nucleoprotein; viral pr 49.2 41 0.0014 25.1 5.7 55 16-73 26-87 (107)
10 2ic6_A Nucleocapsid protein; h 37.9 57 0.0019 23.0 4.8 47 27-73 4-57 (78)
11 3bhp_A UPF0291 protein YNZC; N 37.3 52 0.0018 22.0 4.3 44 19-63 2-45 (60)
12 3vem_A Helicase protein MOM1; 35.5 1.3E+02 0.0046 22.6 6.8 25 38-62 60-84 (115)
13 2zqm_A Prefoldin beta subunit 34.8 99 0.0034 22.3 6.2 29 17-45 2-30 (117)
14 3vem_A Helicase protein MOM1; 34.0 1.1E+02 0.0036 23.2 6.0 31 32-62 65-95 (115)
15 2jvd_A UPF0291 protein YNZC; s 33.1 44 0.0015 21.9 3.3 41 20-61 3-43 (54)
16 2fzt_A Hypothetical protein TM 32.2 37 0.0013 23.7 3.0 26 51-76 15-40 (79)
17 3jux_A Protein translocase sub 30.5 78 0.0027 31.7 6.1 45 28-72 621-665 (822)
18 4afl_A P29ING4, inhibitor of g 29.0 72 0.0025 23.0 4.4 31 14-44 11-41 (104)
19 2jee_A YIIU; FTSZ, septum, coi 27.8 1.5E+02 0.0051 20.9 5.7 32 14-45 6-37 (81)
20 4fi5_A Nucleoprotein; structur 26.9 1.2E+02 0.0041 22.8 5.2 44 30-73 24-74 (113)
21 2fsf_A Preprotein translocase 26.8 96 0.0033 31.2 6.1 45 28-72 617-661 (853)
22 2ic9_A Nucleocapsid protein; h 26.6 1.3E+02 0.0044 22.0 5.2 46 28-73 5-57 (96)
23 2ke4_A CDC42-interacting prote 26.3 1.5E+02 0.0051 21.5 5.7 32 14-50 6-37 (98)
24 1nkt_A Preprotein translocase 25.8 1.1E+02 0.0037 31.1 6.3 45 28-72 651-695 (922)
25 1tf5_A Preprotein translocase 25.6 1.1E+02 0.0037 30.8 6.3 44 29-72 580-623 (844)
26 2ipc_A Preprotein translocase 24.1 1.2E+02 0.0041 31.0 6.3 45 28-72 732-776 (997)
27 2yvc_D Neprilysin; protein-pep 22.9 25 0.00084 19.2 0.6 9 1-9 12-20 (26)
28 2hep_A UPF0291 protein YNZC; S 22.8 81 0.0028 22.5 3.5 41 20-61 3-43 (85)
29 2akf_A Coronin-1A; coiled coil 22.0 69 0.0024 18.3 2.4 22 21-42 6-27 (32)
30 3twe_A Alpha4H; unknown functi 22.0 1.1E+02 0.0037 16.7 3.5 17 27-43 7-23 (27)
31 4etp_B Spindle POLE BODY-assoc 20.8 1.7E+02 0.0059 26.0 5.9 39 28-66 10-48 (333)
32 3na7_A HP0958; flagellar bioge 20.2 1.5E+02 0.0052 24.7 5.4 19 58-76 158-176 (256)
No 1
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=100.00 E-value=2.4e-63 Score=431.60 Aligned_cols=214 Identities=43% Similarity=0.832 Sum_probs=174.5
Q ss_pred CCCCccccchhhhh-----hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccccc
Q 026110 1 MVADKGKKTKVEEE-----NAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPD 75 (243)
Q Consensus 1 ~~~~~~~~~~~~~e-----~~~~~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~IP~ 75 (243)
|++|.+||.|.+++ +....++++++++++|+.||.+++++++++.+|+++||+||+++++|+|++|++||+|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII~~IP~ 80 (225)
T 2e50_A 1 MSAQAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPN 80 (225)
T ss_dssp CHHHHHHHHHHHTTC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred CCCCcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHhcccc
Confidence 88999999999764 4466889999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcChhhhccCChhhHHhhcCcceeEEEEccCCCcceEEEEEecCCCcccCCeEEEEEEeeCCCCCccccccccc
Q 026110 76 FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIK 155 (243)
Q Consensus 76 FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~i~F~F~~NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~ 155 (243)
||++||+||+.++.+|+++|+++|+||+||+|++.+++..||+|+|+|++||||+|++|+|+|++.. +|.+++++|+|+
T Consensus 81 FW~tal~n~~~l~~~i~e~De~iL~~L~dI~v~~~~d~~~gf~i~F~F~~N~yF~N~vLtK~y~~~~-~g~~~s~~t~I~ 159 (225)
T 2e50_A 81 FWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNE-SGDPSSKSTEIK 159 (225)
T ss_dssp HHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC--------CEEECCCC
T ss_pred HHHHHHhcChhhhhhccHhHHHHHHhcCeeEEEEccCCCCceEEEEEeCCCCCccCCEEEEEEEecC-CCCcccCCCcce
Confidence 9999999999999999999999999999999999988789999999999999999999999999988 888889999999
Q ss_pred ccCCCCCCCcccccc--CCCCccc-cccccccccccccCCCccCCchhHHHHHHhhccccchhhhccc
Q 026110 156 WKEGMGIPNGVNHEK--KGNKRPL-AEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNN 220 (243)
Q Consensus 156 Wk~gk~lt~~~~~~k--~~~~r~~-~~~SFF~~F~~~~~~~~~e~~~~ei~~~i~d~i~p~al~yy~~ 220 (243)
||+|+++|++...++ +|++|.. +..|||+||+++..+ .+++||++|+|+||||||+||+.
T Consensus 160 Wk~gkd~t~~~~~kk~~~~~~r~~~~~~SFF~fF~~~~~~-----~~~eige~ikd~i~P~av~yy~~ 222 (225)
T 2e50_A 160 WKSGKDMTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDA-----GADELGEVIKDDIWPNPLQYYLV 222 (225)
T ss_dssp BCSSCCC----------------------CGGGGC-----------CHHHHHHHHHTTTTCSHHHHCC
T ss_pred ecCCCCccchhhhhcccccCcccCCCCCCcceecCCCCCC-----chhHHHHHHHhCccccHHHHhcC
Confidence 999999998765443 3444543 468999999998765 35899999999999999999984
No 2
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=100.00 E-value=4.1e-59 Score=425.61 Aligned_cols=217 Identities=26% Similarity=0.488 Sum_probs=171.4
Q ss_pred hhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhc----------cccchHHHHH
Q 026110 12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK----------SIPDFWLTAF 81 (243)
Q Consensus 12 ~~e~~~~~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~----------~IP~FW~~vl 81 (243)
+.+++..||++|+++|.+|+.||.+++++++++.+++++|++||+++++|+|++|++||+ |||+||++||
T Consensus 40 ~~~~m~sLp~~v~~rI~aLk~lQ~E~~~le~ef~eEv~~LE~KY~kl~qPLyeKR~eII~G~~e~e~~~kgIP~FWltvl 119 (359)
T 3fs3_A 40 YDDKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPEFWLRAL 119 (359)
T ss_dssp -----CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSSSTTSTTHHHHHH
T ss_pred hhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCccccccccCCCCcHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred hcChhhhccCChhhHHhhcCcceeEEEEcc---CCCcceEEEEEecCCCcccCCeEEEEEEeeCC--CCCc---cccccc
Q 026110 82 ISHPALGELLSEEDQKIFRYLSSLEVEDFK---DVKSGYSITFNFSPNPYFEDNKLTKTFTFLDD--DGSM---KITATS 153 (243)
Q Consensus 82 ~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~---d~~~~f~i~F~F~~NpyF~N~~L~K~~~~~~~--~g~~---~~~~t~ 153 (243)
.||++++.+|+++|+++|+||+||+|++.. +.+.||+|+|+|++||||+|++|+|+|++... +|.+ .++||+
T Consensus 120 ~Nhp~ls~~I~e~De~iL~yL~DI~Ve~l~~~~~~~~gfkI~F~F~eNpYF~N~vLtKey~l~~~~~~~dp~~~~se~t~ 199 (359)
T 3fs3_A 120 RNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATV 199 (359)
T ss_dssp HTSHHHHTTCCHHHHHHHTTEEEEEEEECC-------CEEEEEEECSCSSBCCSEEEEEEEEC--------CEEEEEECC
T ss_pred HhchHHHHhccHhHHHHHhhcceeEEEEeccCCCCCCceEEEEEeCCCCcccCCEEEEEEEEeccCCCCCcccccceeee
Confidence 999999999999999999999999999863 45799999999999999999999999999752 2222 469999
Q ss_pred ccccCCCCCCCccccccCCCC-----c----cccccccccccccccCCCccC----------------CchhHHHHHHhh
Q 026110 154 IKWKEGMGIPNGVNHEKKGNK-----R----PLAEESFFTWFSDTQEKDTID----------------GIQDEVAEIIKE 208 (243)
Q Consensus 154 I~Wk~gk~lt~~~~~~k~~~~-----r----~~~~~SFF~~F~~~~~~~~~e----------------~~~~ei~~~i~d 208 (243)
|+||+|+++|++...+|++++ | +.+..|||+||+++..++..+ +.|++||++|++
T Consensus 200 I~WK~GKdlT~k~~~kKqr~K~t~~~R~v~k~~~~eSFFnfFspp~~p~~de~~~~de~~~~~~e~~l~~DfeIGe~Ikd 279 (359)
T 3fs3_A 200 IDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKE 279 (359)
T ss_dssp CCBCTTCCTTCC----------------------CCCGGGGSCCBCC------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEeCCCccchhhhhhhccccCCCCceeeeccCCCCCceeeCCCCCCCCcccccccchhhhHHHHHHHHHhHHHHHHHHh
Confidence 999999999988765443332 2 246799999999998764321 147899999999
Q ss_pred ccccchhhhccccCCCCcce
Q 026110 209 DLWPNPLTYFNNVIPLPVSF 228 (243)
Q Consensus 209 ~i~p~al~yy~~~~~~~~~~ 228 (243)
+|||+||+||+|+.-+..+-
T Consensus 280 ~IiP~av~yftGea~e~e~~ 299 (359)
T 3fs3_A 280 RIIPYAVDYYLGIIIESESN 299 (359)
T ss_dssp THHHHHHHHHTTCC------
T ss_pred ceecChHHhhCCcccccccC
Confidence 99999999999998766543
No 3
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=100.00 E-value=2.3e-59 Score=398.26 Aligned_cols=189 Identities=30% Similarity=0.662 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccccchHHHHHhcChhhhccCChhhHHhhcCcceeE
Q 026110 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLE 106 (243)
Q Consensus 27 ~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ 106 (243)
+++|++||.+++++++++++++++||+||+++++|+|++|++||++||+||++||+||++++.++ ++|+++|+||+||+
T Consensus 2 ~~~L~~iQ~e~~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~iI~~IP~FW~t~l~n~~~ls~i~-~~De~~L~~L~di~ 80 (193)
T 3kyp_A 2 MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPALSDIV-PEDIDILNHLVKLD 80 (193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTTHHHHTTSSSSTTSS-CHHHHTTCCCCEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcCCccHHHHHHHcCchHHHHH-HhhHHHHcCcceEE
Confidence 57899999999999999999999999999999999999999999999999999999999999876 69999999999999
Q ss_pred EEEccCCCcceEEEEEecC--CCcccCCeEEEEEEeeCCCCCcccccccccccCCCCCCCccccccCCCCcccccccccc
Q 026110 107 VEDFKDVKSGYSITFNFSP--NPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFT 184 (243)
Q Consensus 107 Ve~~~d~~~~f~i~F~F~~--NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~lt~~~~~~k~~~~r~~~~~SFF~ 184 (243)
|++..+++.||+|+|+|++ ||||+|++|+|+|++.. +|+.++++|+|+||+|+|+|+....+|++.++..+..|||+
T Consensus 81 v~~~~~~~~gf~i~F~F~~n~N~yF~N~vLtK~y~~~~-~g~~~~~~t~I~Wk~gk~~t~~~~~kr~~~~~~~~~~SFF~ 159 (193)
T 3kyp_A 81 LKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDN-NQEKVVECTRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFE 159 (193)
T ss_dssp CBCCSSSSCCCEEEEECSCCSSCSCSCEEEECCCCCC-----CCCCCCCCCCCSSCCCCC--------------CCCTTT
T ss_pred EEEccCCCCceEEEEEEcCCCCccccCceEEEEEEEcC-CCCeeeccceeeeecCCCcchhhhhccccccccCCcchHhh
Confidence 9988777889999999998 89999999999999988 78888999999999999999765444333334457799999
Q ss_pred ccccccCCCccCCchhHHHHHHhhccccchhhhccccC
Q 026110 185 WFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNVI 222 (243)
Q Consensus 185 ~F~~~~~~~~~e~~~~ei~~~i~d~i~p~al~yy~~~~ 222 (243)
||+++..+ ++++||++|+|+||||||+||+|+.
T Consensus 160 wF~~~~~~-----~~~eige~ikd~i~P~~l~yy~ge~ 192 (193)
T 3kyp_A 160 WFTTDELQ-----DKPDVGELIRREIWHNPLSYYLGLE 192 (193)
T ss_dssp TCCSSCCT-----TTTCTTHHHHTTTTTCHHHHHC---
T ss_pred hcCCCCcC-----CchHHHHHHHhCeeeCHHHHhCCCC
Confidence 99998765 5789999999999999999999975
No 4
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=100.00 E-value=5.7e-57 Score=420.53 Aligned_cols=210 Identities=26% Similarity=0.559 Sum_probs=185.6
Q ss_pred hhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhh----------------------
Q 026110 13 EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII---------------------- 70 (243)
Q Consensus 13 ~e~~~~~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI---------------------- 70 (243)
.+++.+||++|+++|.+|+.||.++.++++++.+++++|++||.++++|+|++|++||
T Consensus 82 ~~~i~sLp~~v~~rI~aLk~lQ~e~~~le~ef~~ev~eLE~Ky~~~~~PLy~KR~eII~G~~ept~eE~~~~~~~~~~~~ 161 (417)
T 2ayu_A 82 SGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESLN 161 (417)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHTT
T ss_pred cchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhhcccccccchhh
Confidence 3678999999999999999999999999999999999999999999999999999998
Q ss_pred ---------------------ccccchHHHHHhcChhhhccCChhhHHhhcCcceeEEEEccCCCcceEEEEEe--cCCC
Q 026110 71 ---------------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNF--SPNP 127 (243)
Q Consensus 71 ---------------------~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~i~F~F--~~Np 127 (243)
+|||+||++||+||+.|+.+|+++|++||+||+||+|++..++..||+|+|+| .+||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~kgIP~FWltalkN~~~lse~I~e~De~iLk~L~DI~Ve~~~d~~~gF~L~F~F~~~~Np 241 (417)
T 2ayu_A 162 ETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANP 241 (417)
T ss_dssp CGGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEEEEEEEECTTTCS
T ss_pred hhhhhhhhhhhcccccccccccCCccHHHHHHHcChHHHHhhhhhhHHHHhhccceEEEEccCCCcceEEEEEeCCCCCc
Confidence 68999999999999999999999999999999999999988768899999999 9999
Q ss_pred cccCCeEEEEEEeeCCC---CCc---ccccccccccC-CCCCCCccccccCCC-----Ccc----ccccccccccccccC
Q 026110 128 YFEDNKLTKTFTFLDDD---GSM---KITATSIKWKE-GMGIPNGVNHEKKGN-----KRP----LAEESFFTWFSDTQE 191 (243)
Q Consensus 128 yF~N~~L~K~~~~~~~~---g~~---~~~~t~I~Wk~-gk~lt~~~~~~k~~~-----~r~----~~~~SFF~~F~~~~~ 191 (243)
||+|++|||+|++.... |+. .++||+|+||+ |+|||++...+|+++ .|+ ++..||||||+++..
T Consensus 242 YF~N~vLtKtY~~~~e~~~~g~~~~~~~egt~I~WK~~GknlT~k~~kkKqr~K~~~~~R~v~k~v~~~SFFnfFspp~~ 321 (417)
T 2ayu_A 242 FFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKI 321 (417)
T ss_dssp SBCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC---------CCEEEEECCCGGGGGSCSCS
T ss_pred cccCCeEEEEEEEeccCCCCCCcccccccCcceeeecCCCCcchhhhhhcccccCCCcccccccCCCCCCceeecCCCCC
Confidence 99999999999998632 443 47899999999 999998876554432 232 456899999999887
Q ss_pred CCcc-C-C----------chhHHHHHHhhccccchhhhccccC
Q 026110 192 KDTI-D-G----------IQDEVAEIIKEDLWPNPLTYFNNVI 222 (243)
Q Consensus 192 ~~~~-e-~----------~~~ei~~~i~d~i~p~al~yy~~~~ 222 (243)
+++. + + .|++||++|+++|||+||.||+|+.
T Consensus 322 p~~dede~~~ee~e~~l~~DfeIG~~Ikd~IiP~AV~yftGea 364 (417)
T 2ayu_A 322 QNEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAA 364 (417)
T ss_dssp CCCTTSSSTTHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHSHH
T ss_pred CCccccccchHHHHHHHHHHHHHHHHHHhhccccHHHHhcccc
Confidence 6543 1 1 3679999999999999999999964
No 5
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=100.00 E-value=4.7e-53 Score=374.94 Aligned_cols=196 Identities=24% Similarity=0.400 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccccchHHHHHhcChhhhccCChhhHHhhcCcceeEEE
Q 026110 29 KLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVE 108 (243)
Q Consensus 29 ~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve 108 (243)
+|..++.++..++.++.++.++++++|+++++|+|++|++||+|||+||++||+||+.++.+|+++|++||+||+||+|+
T Consensus 10 ~l~~~~~~l~~lq~e~~~~~~ele~ky~~~~~Ply~kR~eII~~IP~FWltal~n~~~l~~~I~e~De~iL~~L~dI~v~ 89 (264)
T 2zd7_A 10 EHAKAFLGLAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDFKYIDTIDKIKVE 89 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHSTTGGGGSCGGGHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHcChHHHhhcCHhhHHHHHhcCceEEE
Confidence 34455555556666666666789999999999999999999999999999999999999999999999999999999999
Q ss_pred Ec-----cCCCcceEEEEEecC-CCcccCCeEEEEEEeeCC-CC--C--cccccccccccCCCCC-CCccccccC---CC
Q 026110 109 DF-----KDVKSGYSITFNFSP-NPYFEDNKLTKTFTFLDD-DG--S--MKITATSIKWKEGMGI-PNGVNHEKK---GN 173 (243)
Q Consensus 109 ~~-----~d~~~~f~i~F~F~~-NpyF~N~~L~K~~~~~~~-~g--~--~~~~~t~I~Wk~gk~l-t~~~~~~k~---~~ 173 (243)
++ .+.++||+|+|+|++ ||||+|++|+|+|++... +| . .++++|+|+||+|++. |.....+|+ |+
T Consensus 90 ~~~~~~~~~~~~gf~i~F~F~~~NpyF~N~vLtK~y~~~~~~dg~~~~~~~s~~t~I~WK~g~~~~~~~~~~kk~~~~~~ 169 (264)
T 2zd7_A 90 WLALESEMYDTRDFSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQEDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGK 169 (264)
T ss_dssp EGGGTCTTSCTTCEEEEEEECCBTTTBCCEEEEEEEEEECCSSSCCCCEEEECCCCCCCCGGGGGGCTTTCSCSSSHHHH
T ss_pred EecccccCCCCCceEEEEEeCCCCCCccCCeEEEEEEecccCCCCCCCceeEeecccccCCCccccchhhhhhccccccc
Confidence 96 566899999999999 999999999999999862 23 2 6789999999997754 444332221 11
Q ss_pred Cc-cccccccccccccccCCCccC-CchhHHHHHHhhccccchhhhccccCCC
Q 026110 174 KR-PLAEESFFTWFSDTQEKDTID-GIQDEVAEIIKEDLWPNPLTYFNNVIPL 224 (243)
Q Consensus 174 ~r-~~~~~SFF~~F~~~~~~~~~e-~~~~ei~~~i~d~i~p~al~yy~~~~~~ 224 (243)
++ .....|||+||+++..+++.+ ..+++||++|+++||||||+||+|+..+
T Consensus 170 ~~~r~~~~SFF~fF~~~~~~~~~~~~~d~eig~~Ikd~I~P~al~yf~g~~~d 222 (264)
T 2zd7_A 170 KKYRQGMKTIFGWFRWTGLKPGKEFPHGDSLASLFSEEIYPFCVKYYAEAQRD 222 (264)
T ss_dssp HHHHHHHTSHHHHTTCCSSSTTSSSTTHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred cccCCCCCCcceecCCCCCCccccccCchhHHHHHHhhhccCHHHHhcccccc
Confidence 11 124579999999987664432 3689999999999999999999986554
No 6
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=94.32 E-value=0.099 Score=34.36 Aligned_cols=37 Identities=24% Similarity=0.510 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 026110 30 LQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR 66 (243)
Q Consensus 30 L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR 66 (243)
+..|+..+..++.++++|+-++.+.|..+++|+.+.-
T Consensus 12 ~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KRqPIldAi 48 (51)
T 2jo8_A 12 VEDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDAI 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence 3456777888999999999999999999999998653
No 7
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=92.93 E-value=0.21 Score=40.76 Aligned_cols=57 Identities=12% Similarity=0.289 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccccch
Q 026110 20 DSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDF 76 (243)
Q Consensus 20 ~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~IP~F 76 (243)
-+++-.++..+.+++.++..++.++..++.+++..|.+..+|+-.+...+-.+|-.|
T Consensus 15 ~~~~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y 71 (171)
T 2p2u_A 15 IRQAEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATF 71 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888999999999999999999999999999999999999999988887777666
No 8
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=72.37 E-value=8.4 Score=33.29 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Q 026110 21 SELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDK 65 (243)
Q Consensus 21 ~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~k 65 (243)
.+++.++.+|..||.++++++.++.++..++.+-...+|+.+...
T Consensus 9 ~~l~~~~~~l~~lq~e~~~~~~ele~ky~~~~~Ply~kR~eII~~ 53 (264)
T 2zd7_A 9 NEHAKAFLGLAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDE 53 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 458899999999999999999999999999988877777766643
No 9
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=49.17 E-value=41 Score=25.06 Aligned_cols=55 Identities=15% Similarity=0.276 Sum_probs=36.9
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH----hhhhhHHhhhhhhccc
Q 026110 16 AEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVE---QKYSE----IRKPVYDKRNDIIKSI 73 (243)
Q Consensus 16 ~~~~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le---~ky~k----~~~Ply~kR~eiI~~I 73 (243)
...+++=. +..|+.||.|+...|.+..-...+|+ +.|.+ ..+--|.+|+..++.+
T Consensus 26 ~~~~~~~t---M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsal 87 (107)
T 2k48_A 26 FQGIDPFT---MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTL 87 (107)
T ss_dssp CCCCCSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hhcccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 34455444 67778889999988888776666664 33332 4566788998888654
No 10
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=37.92 E-value=57 Score=22.98 Aligned_cols=47 Identities=13% Similarity=0.282 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH----hhhhhHHhhhhhhccc
Q 026110 27 IEKLQEIQDELEKINEEASEKVLEVE---QKYSE----IRKPVYDKRNDIIKSI 73 (243)
Q Consensus 27 ~~~L~~lQ~el~~le~e~~~e~~~le---~ky~k----~~~Ply~kR~eiI~~I 73 (243)
+..|+.||.++...+.+..-...+|+ ..|.+ ..+--|.+|+..++.+
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~l 57 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSAL 57 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 45678888888888877766655554 23322 4566788998888654
No 11
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=37.27 E-value=52 Score=21.99 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 026110 19 IDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVY 63 (243)
Q Consensus 19 ~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply 63 (243)
.+.+...+|+.|...+++ .-|..+-..|..+|+++|.+..+--+
T Consensus 2 m~~~~i~RINeLakK~K~-~gLT~eEk~EQ~~LR~eYl~~fR~~~ 45 (60)
T 3bhp_A 2 ISNAKIARINELAAKAKA-GVITEEEKAEQQKLRQEYLKGFRSSM 45 (60)
T ss_dssp CCHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678899999998877 44555556677888888887665443
No 12
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=35.51 E-value=1.3e+02 Score=22.57 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 026110 38 EKINEEASEKVLEVEQKYSEIRKPV 62 (243)
Q Consensus 38 ~~le~e~~~e~~~le~ky~k~~~Pl 62 (243)
..|-.++++|+.++.+||+.+.+-+
T Consensus 60 lqLkse~e~E~ae~k~KYD~~lqe~ 84 (115)
T 3vem_A 60 SILKAELERKMAEVQAEFRRKFHEV 84 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567888888888888777654
No 13
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=34.84 E-value=99 Score=22.27 Aligned_cols=29 Identities=14% Similarity=0.314 Sum_probs=25.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026110 17 EQIDSELVLSIEKLQEIQDELEKINEEAS 45 (243)
Q Consensus 17 ~~~~~~v~~~~~~L~~lQ~el~~le~e~~ 45 (243)
..+|+++++.+..+..+|.++..+..+..
T Consensus 2 ~~~~~e~Q~~i~~~~~l~~~~~~l~~q~~ 30 (117)
T 2zqm_A 2 QNIPPQVQAMLGQLESYQQQLQLVVQQKQ 30 (117)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999986643
No 14
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=34.03 E-value=1.1e+02 Score=23.15 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026110 32 EIQDELEKINEEASEKVLEVEQKYSEIRKPV 62 (243)
Q Consensus 32 ~lQ~el~~le~e~~~e~~~le~ky~k~~~Pl 62 (243)
++..|+.++..+++..+.+++..|..+.+-+
T Consensus 65 e~e~E~ae~k~KYD~~lqe~ese~~~kkK~l 95 (115)
T 3vem_A 65 ELERKMAEVQAEFRRKFHEVEAEHNTRTTKI 95 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444443
No 15
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=33.13 E-value=44 Score=21.91 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026110 20 DSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKP 61 (243)
Q Consensus 20 ~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~P 61 (243)
+.+...+|+.|...+++ ..|..+-..|..+|+++|.+..+-
T Consensus 3 ~~~~i~RINeLakK~K~-~gLT~eEk~EQ~~LR~eYl~~fR~ 43 (54)
T 2jvd_A 3 SNAKIARINELAAKAKA-GVITEEEKAEQQKLRQEYLKGFRS 43 (54)
T ss_dssp CHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred cHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999988877 445555566778888888776553
No 16
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=32.19 E-value=37 Score=23.74 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=19.5
Q ss_pred HHHHHHHhhhhhHHhhhhhhccccch
Q 026110 51 VEQKYSEIRKPVYDKRNDIIKSIPDF 76 (243)
Q Consensus 51 le~ky~k~~~Ply~kR~eiI~~IP~F 76 (243)
+|++-.....-++.+|.++++++|.=
T Consensus 15 IE~edyE~L~~LL~kREkLlk~L~~e 40 (79)
T 2fzt_A 15 IEKEDYETLLSLLNKRKELMEGLPKD 40 (79)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHhhHHHHHHHHHHHHHHHhhCcHH
Confidence 56666667777888999999888753
No 17
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=30.45 E-value=78 Score=31.69 Aligned_cols=45 Identities=24% Similarity=0.468 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 026110 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (243)
Q Consensus 28 ~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~ 72 (243)
.+++..|++.+..+-...+.+++...--+.+++-+|.+|++++.+
T Consensus 621 ~~ie~AQkkvE~~nf~~Rk~ll~yDdv~n~QR~~iY~~R~~iL~~ 665 (822)
T 3jux_A 621 KLIENIQKKVEGINFSIRKTLMEMDDVLDKQRRAVYSLRDQILLE 665 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356778999999998998999999888899999999999999975
No 18
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=28.99 E-value=72 Score=22.98 Aligned_cols=31 Identities=16% Similarity=0.356 Sum_probs=25.1
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026110 14 ENAEQIDSELVLSIEKLQEIQDELEKINEEA 44 (243)
Q Consensus 14 e~~~~~~~~v~~~~~~L~~lQ~el~~le~e~ 44 (243)
|.++.||.++++.+..+..+..+...+-.+.
T Consensus 11 d~ie~LP~El~r~~~~irelD~~~~~~~~~i 41 (104)
T 4afl_A 11 DSIENLPFELQRNFQLMRDLDQRTEDLKAEI 41 (104)
T ss_dssp HSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678899999999999988887777665553
No 19
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=27.79 E-value=1.5e+02 Score=20.92 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=25.2
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026110 14 ENAEQIDSELVLSIEKLQEIQDELEKINEEAS 45 (243)
Q Consensus 14 e~~~~~~~~v~~~~~~L~~lQ~el~~le~e~~ 45 (243)
|-...|...++++++.+.-+|.+++.+..+..
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~ 37 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNN 37 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778899999999999999988876653
No 20
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=26.86 E-value=1.2e+02 Score=22.76 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHH----HhhhhhHHhhhhhhccc
Q 026110 30 LQEIQDELEKINEEASEKVLEVE---QKYS----EIRKPVYDKRNDIIKSI 73 (243)
Q Consensus 30 L~~lQ~el~~le~e~~~e~~~le---~ky~----k~~~Ply~kR~eiI~~I 73 (243)
|+.||.|+...+.+..-...+|+ ..|. ...+--|.+|+..++.+
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~l 74 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSI 74 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 55667777776666655544443 2222 25566889999888654
No 21
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=26.85 E-value=96 Score=31.21 Aligned_cols=45 Identities=20% Similarity=0.454 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 026110 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (243)
Q Consensus 28 ~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~ 72 (243)
..++..|...+..+-...+.+++-..--+++++-+|++|++++.+
T Consensus 617 ~~i~~aq~~ve~~~~~~Rk~ll~yddv~n~QR~~iy~~R~~~l~~ 661 (853)
T 2fsf_A 617 KAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDV 661 (853)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 446667888888888888888888888889999999999999964
No 22
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=26.61 E-value=1.3e+02 Score=21.98 Aligned_cols=46 Identities=13% Similarity=0.310 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HhhhhhHHhhhhhhccc
Q 026110 28 EKLQEIQDELEKINEEASEKVLEVE---QKYS----EIRKPVYDKRNDIIKSI 73 (243)
Q Consensus 28 ~~L~~lQ~el~~le~e~~~e~~~le---~ky~----k~~~Ply~kR~eiI~~I 73 (243)
..|+.||.++...+.+..-...+|+ ..|. ...+--|.+|+..++.+
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~l 57 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSAL 57 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 4567778888777777665555553 2232 24566889999888654
No 23
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=26.25 E-value=1.5e+02 Score=21.48 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=21.7
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026110 14 ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLE 50 (243)
Q Consensus 14 e~~~~~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~ 50 (243)
+....|||+.++ +.||.+++.++.+..++...
T Consensus 6 ~d~s~LPpeqRk-----kkL~~Ki~el~~ei~ke~~~ 37 (98)
T 2ke4_A 6 EDFSHLPPEQQR-----KRLQQQLEERSRELQKEVDQ 37 (98)
T ss_dssp SCSSSSCHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 445889999863 34677777777776655444
No 24
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=25.75 E-value=1.1e+02 Score=31.14 Aligned_cols=45 Identities=24% Similarity=0.447 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 026110 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (243)
Q Consensus 28 ~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~ 72 (243)
.+++..|+..+..+-+..+.+++...--+++++-+|++|++++.+
T Consensus 651 ~~ie~aQkkvE~~nf~iRk~ll~yDdv~n~QR~~iY~~R~~iL~~ 695 (922)
T 1nkt_A 651 RAIKSAQTQVEQQNFEVRKNVLKYDEVMNQQRKVIYAERRRILEG 695 (922)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456678999999988888888888888889999999999999965
No 25
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=25.65 E-value=1.1e+02 Score=30.77 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 026110 29 KLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (243)
Q Consensus 29 ~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~ 72 (243)
.+...|...+..+-...+.+++...--+.+++-+|++|++++.+
T Consensus 580 ~i~~aq~~ve~~~~~~rk~ll~yddv~~~QR~~iy~~R~~~l~~ 623 (844)
T 1tf5_A 580 AVESSQKRVEGNNFDSRKQLLQYDDVLRQQREVIYKQRFEVIDS 623 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56677888888888888888888888889999999999999975
No 26
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=24.13 E-value=1.2e+02 Score=31.02 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 026110 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (243)
Q Consensus 28 ~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~ 72 (243)
.+++..|+..+..+-...+.+++-..--+.+++-+|++|++++.+
T Consensus 732 ~~ie~AQkkvE~~nf~iRK~ll~yDdV~n~QR~~IY~~R~~iL~~ 776 (997)
T 2ipc_A 732 RSIERAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLG 776 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456678999999998888888888888889999999999999977
No 27
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=22.91 E-value=25 Score=19.20 Aligned_cols=9 Identities=44% Similarity=0.375 Sum_probs=6.5
Q ss_pred CCCCccccc
Q 026110 1 MVADKGKKT 9 (243)
Q Consensus 1 ~~~~~~~~~ 9 (243)
|+||.|||.
T Consensus 12 inapkpkkk 20 (26)
T 2yvc_D 12 INAPKPKKK 20 (26)
T ss_pred ccCCCcchh
Confidence 678877764
No 28
>2hep_A UPF0291 protein YNZC; SR384, structure, autostructure, northeast structural genomics consortium, PSI-1, protein structure initiative, NESG; NMR {Bacillus subtilis} SCOP: a.2.21.1
Probab=22.83 E-value=81 Score=22.53 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026110 20 DSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKP 61 (243)
Q Consensus 20 ~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~P 61 (243)
+.+...+|+.|...+++ .-|..+-..|..+|+++|.+..+-
T Consensus 3 ~~~~i~RINeLakK~K~-~GLT~eEk~EQ~~LR~eYl~~fR~ 43 (85)
T 2hep_A 3 SNAKIARINELAAKAKA-GVITEEEKAEQQKLRQEYLKGFRS 43 (85)
T ss_dssp CSHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999988877 445555566777888888765553
No 29
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=22.00 E-value=69 Score=18.29 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026110 21 SELVLSIEKLQEIQDELEKINE 42 (243)
Q Consensus 21 ~~v~~~~~~L~~lQ~el~~le~ 42 (243)
.++++--.-++.||+.++.++.
T Consensus 6 e~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 6 EDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445566777766664
No 30
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.98 E-value=1.1e+02 Score=16.65 Aligned_cols=17 Identities=24% Similarity=0.624 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026110 27 IEKLQEIQDELEKINEE 43 (243)
Q Consensus 27 ~~~L~~lQ~el~~le~e 43 (243)
...|+++|..+.++.++
T Consensus 7 ykeledlqerlrklrkk 23 (27)
T 3twe_A 7 YKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55667777777666543
No 31
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.84 E-value=1.7e+02 Score=26.00 Aligned_cols=39 Identities=15% Similarity=0.343 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 026110 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR 66 (243)
Q Consensus 28 ~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR 66 (243)
..++.++.+.+++++++...-..-..+|+++.+..+.+|
T Consensus 10 ~e~~~~~~~~~~vq~kA~~~E~~Yn~~~dKmeqE~lrRR 48 (333)
T 4etp_B 10 KEIAALEKEIAALEKEISKQEKFYNDTYNTVCKELLRSR 48 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666655544444555555656555444
No 32
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=20.20 E-value=1.5e+02 Score=24.71 Aligned_cols=19 Identities=11% Similarity=0.389 Sum_probs=14.4
Q ss_pred hhhhhHHhhhhhhccccch
Q 026110 58 IRKPVYDKRNDIIKSIPDF 76 (243)
Q Consensus 58 ~~~Ply~kR~eiI~~IP~F 76 (243)
...-+..+|.++..+||.=
T Consensus 158 e~~~l~~~r~~l~~~i~~~ 176 (256)
T 3na7_A 158 TQQIIFKKKEDLVEKTEPK 176 (256)
T ss_dssp HHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHhcCCHH
Confidence 4455778999999999853
Done!