BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026112
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 83/143 (58%)
Query: 74 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133
K E +A +P LPEIA AGRSNVGKSS +N+L + + RTS KPG TQT+NF
Sbjct: 5 KSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF 64
Query: 134 FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH 193
+ + +L VD+PGYGFA + ++AW +++ Y++TR LK V ++D + D
Sbjct: 65 YIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDV 124
Query: 194 ELISLMERSQTKYQVVLTKTDTV 216
++ ++ V+ TK D +
Sbjct: 125 QMYEFLKYYGIPVIVIATKADKI 147
>pdb|1PUI|A Chain A, Structure Of Engb Gtpase
pdb|1PUI|B Chain B, Structure Of Engb Gtpase
Length = 210
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 92/167 (55%), Gaps = 4/167 (2%)
Query: 76 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
F +A P+ E+AFAGRSN GKSS LN LT Q + RTS PG TQ IN F+
Sbjct: 10 HFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE 69
Query: 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 195
+ LVDLPGYG+A EE+K W+ + EY+ R SL+ + +L+D + +K D ++
Sbjct: 70 VADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQM 129
Query: 196 ISLMERSQTKYQVVLTKTDTVFPIDVARRAM--QIEESLKANNSLVQ 240
I S V+LTK D + AR+A + E++ A N VQ
Sbjct: 130 IEWAVDSNIAVLVLLTKADKL--ASGARKAQLNMVREAVLAFNGDVQ 174
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 95/162 (58%), Gaps = 8/162 (4%)
Query: 75 LEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF 134
+E A+ +P P E+AF GRSNVGKSS+LNAL + + S PG T++INF+
Sbjct: 6 VELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSINFY 64
Query: 135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE 194
+ +K VDLPGYG+A ++ + W+ LV++Y R SL+ V LL+D + + P+D +
Sbjct: 65 LVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGR--IPPQDSD 122
Query: 195 L--ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234
L + M+ + +VLTK D V ++ RA ++EE K
Sbjct: 123 LMMVEWMKSLNIPFTIVLTKMDKV---KMSERAKKLEEHRKV 161
>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
Length = 223
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 70/142 (49%), Gaps = 4/142 (2%)
Query: 77 FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL 136
FF P PEIAFAGRSN GKS+ +N L Q + S PG TQ IN+F +
Sbjct: 14 FFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSV 73
Query: 137 GTK----LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192
G LVDLPGYG+A K WE+L+ Y+ TR L + L++D + + D
Sbjct: 74 GPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD 133
Query: 193 HELISLMERSQTKYQVVLTKTD 214
+I + +LTK D
Sbjct: 134 RRMIEWFAPTGKPIHSLLTKCD 155
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 99 GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
G NVGKS+++N L ++ + +T D+PG+T + + K+G +L L+D PG
Sbjct: 127 GIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPG 174
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 11/96 (11%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA- 153
I FAGRSNVGKS+++ LT + VR +PG+T+ I + ++D PG+GF
Sbjct: 4 IIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWKNH-KIIDXPGFGFXXGL 60
Query: 154 ----KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185
+E +KD E+V ++ L++D K
Sbjct: 61 PKEVQERIKD---EIVHFIEDNAKNIDVAVLVVDGK 93
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 19/129 (14%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPGYG 149
I AGR NVGKSS +NAL Q V SD G T +++ +G + LVD PG
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGL- 93
Query: 150 FAYAKEEVKDAWEELVKEYV--STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ 207
D EL + V + RV + C ++ T P + ++++L + + +
Sbjct: 94 ---------DDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFV 144
Query: 208 VVLTKTDTV 216
VV+ K D +
Sbjct: 145 VVVNKIDVL 153
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGY 148
+ ++ GR NVGKSS+ N L ++ V +D PG+T+ + + T + LVD G
Sbjct: 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAV-VADVPGVTRDLKEGVVETDRGRFLLVDTGGL 59
Query: 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLL-IDTKWGVKPRDHELISLMERSQTKYQ 207
D WE+ ++E V + V L +D + + D+E+ + R
Sbjct: 60 WSG-------DKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVI 112
Query: 208 VVLTKTD 214
+V TK D
Sbjct: 113 LVATKVD 119
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 27/144 (18%)
Query: 94 EIAFAGRSNVGKSSMLNALT------RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
++A AG NVGK+S+ NALT W V K G+ F G + L+DLPG
Sbjct: 7 KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGV-----FTYKGYTINLIDLPG 61
Query: 148 -YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY 206
Y Y+ + K A + L+K V L+ D+ V P + L L+E + +
Sbjct: 62 TYSLGYSSIDEKIARDYLLKG------DADLVILVADS---VNP-EQSLYLLLEILEMEK 111
Query: 207 QVVLTKTDTVFPIDVARR-AMQIE 229
+V+L T ID A++ M+I+
Sbjct: 112 KVILAMT----AIDEAKKTGMKID 131
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 70/157 (44%), Gaps = 26/157 (16%)
Query: 94 EIAFAGRSNVGKSSMLNALT------RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
++A AG NVGK+S+ NALT W V K G+ F G + L+DLPG
Sbjct: 7 KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGV-----FTYKGYTINLIDLPG 61
Query: 148 -YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY 206
Y Y+ + K A + L+K V L+ D+ V P + L L+E + +
Sbjct: 62 TYSLGYSSIDEKIARDYLLKG------DADLVILVADS---VNP-EQSLYLLLEILEMEK 111
Query: 207 QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243
+V+L T ID A++ + + L PVV
Sbjct: 112 KVILAMT----AIDEAKKTGMKIDRYELQKHLGIPVV 144
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 94 EIAFAGRSNVGKSSMLNALT------RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
++A AG NVGK+S+ NALT W V K G+ F G + L+DLPG
Sbjct: 7 KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGV-----FTYKGYTINLIDLPG 61
Query: 148 -YGFAYAKEEVKDAWEELVK 166
Y Y+ + K A + L+K
Sbjct: 62 TYSLGYSSIDEKIARDYLLK 81
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLVDLPG 147
EIA G NVGKS++ NALT + V + PG+T + F G K +VDLPG
Sbjct: 9 EIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 63
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLVDLPG 147
EIA G NVGKS++ NALT + V + PG+T + F G K +VDLPG
Sbjct: 6 EIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 60
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLVDLPG 147
EIA G NVGKS++ NALT + V + PG+T + F G K +VDLPG
Sbjct: 5 EIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 59
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLVDLPG 147
EIA G NVGKS++ NALT + V + PG+T + F G K +VDLPG
Sbjct: 5 EIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 59
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 23/161 (14%)
Query: 88 PAPDLPEIAFA--GRSNVGKSSMLNALTRQWGV-----VRTSDKPGLTQTINF--FKL-G 137
P D I G + GK+++ LT + S K G+T I F FKL
Sbjct: 13 PHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN 72
Query: 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 197
++ LVD PG+ +L++ VS + +++D K G K + E +
Sbjct: 73 YRITLVDAPGHA-------------DLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML 119
Query: 198 LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 238
+++ VV+TK+D ++ R M ++ L++ ++L
Sbjct: 120 ILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL 160
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 91 DLPEIAFAGRSNVGKSSMLNA-LTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVDLP 146
D ++A GR NVGKS++ NA L ++ +V S PG T+ F G K VD
Sbjct: 179 DAIKVAIVGRPNVGKSTLFNAILNKERALV--SPIPGTTRDPVDDEVFIDGRKYVFVDTA 236
Query: 147 GYGFAYAKEEVKDAWEELVKEYVSTRV--SLKR---VCLLIDTKWGVKPRDHELISLMER 201
G K V+ V++Y + RV S+++ V +++D G+ +D L ER
Sbjct: 237 GL---RRKSRVE---PRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRXAGLXER 290
Query: 202 SQTKYQVVLTKTDTV 216
VV K D V
Sbjct: 291 RGRASVVVFNKWDLV 305
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 12/127 (9%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-----TINFFKLGTKLCLVDLPGYG 149
+ GR NVGKS++ N L ++ + D+ G+T+ T+ ++ G LVD G
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAI-VEDEEGVTRDPVQDTVEWY--GKTFKLVDTCGV- 59
Query: 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVV 209
F ++ + +E+ + V ++D K G+ D L + +S +V
Sbjct: 60 FDNPQDIISQKXKEVTLNXIR---EADLVLFVVDGKRGITKEDESLADFLRKSTVDTILV 116
Query: 210 LTKTDTV 216
K + +
Sbjct: 117 ANKAENL 123
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 94 EIAFAGRSNVGKSSMLNALT-RQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYG 149
++ AGR N GKSS+LNAL R+ +V +D G T+ + + G L ++D G
Sbjct: 9 KVVIAGRPNAGKSSLLNALAGREAAIV--TDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 66
Query: 150 FAYAKEE---VKDAWEEL 164
A + E ++ AW+E+
Sbjct: 67 EASDEVERIGIERAWQEI 84
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 25/157 (15%)
Query: 95 IAFAGRSNVGKSSMLNAL------------TRQWGVVRTSDKPGLTQTINFFKLGTKLCL 142
I G+S +GKS+++N L R+ + +T + + I + KL +
Sbjct: 5 IMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTV 64
Query: 143 VDLPGYGFAYAKEEVKDAWEELVKE----YVSTRVSLKRVCLLIDTK-----WGVKPRDH 193
+D PG+G E + E+ + E ++ V++ R + DT+ + + P H
Sbjct: 65 IDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH 124
Query: 194 ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230
L L ++ L+K + P+ M +EE
Sbjct: 125 SLRPL----DLEFMKHLSKVVNIIPVIAKADTMTLEE 157
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFA 151
+ G+ NVGKS++LN L + + T D PG T+ + G +VD G
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNEDRAIVT-DIPGTTRDVISEEIVIRGILFRIVDTAG---- 300
Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVL 210
+ E D E L E + + L + P D E ++ER + K Y VV+
Sbjct: 301 -VRSETNDLVERLGIERTLQEIEKADIVLFVLD--ASSPLDEEDRKILERIKNKRYLVVI 357
Query: 211 TKTDTVFPID 220
K D V I+
Sbjct: 358 NKVDVVEKIN 367
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 94 EIAFAGRSNVGKSSMLNALT-RQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYG 149
++ AGR N GKSS+LNAL R+ +V +D G T+ + + G L ++D G
Sbjct: 6 KVVIAGRPNAGKSSLLNALAGREAAIV--TDIAGTTRDVLREHIHIDGXPLHIIDTAGLR 63
Query: 150 FAYAKEE---VKDAWEEL 164
A + E ++ AW+E+
Sbjct: 64 EASDEVERIGIERAWQEI 81
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 94 EIAFAGRSNVGKSSMLNALT-RQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYG 149
++ AGR N GKSS+LNAL R+ +V +D G T+ + + G L ++D G
Sbjct: 6 KVVIAGRPNAGKSSLLNALAGREAAIV--TDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 63
Query: 150 FAYAKEE---VKDAWEEL 164
A + E ++ AW+E+
Sbjct: 64 EASDEVERIGIERAWQEI 81
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 15/132 (11%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTK-------LCLVDLPG 147
+A G+ NVGKS++LN L V S K G T+ LG K + +D PG
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGT-KVSIISPKAGTTR---MRVLGVKNIPNEAQIIFLDTPG 67
Query: 148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-Y 206
+ + + E+ K+ + + +ID G +PRD E+ + K
Sbjct: 68 IYEPKKSDVLGHSMVEIAKQSLE---EADVILFMIDATEGWRPRDEEIYQNFIKPLNKPV 124
Query: 207 QVVLTKTDTVFP 218
VV+ K D + P
Sbjct: 125 IVVINKIDKIGP 136
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 15/132 (11%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTK-------LCLVDLPG 147
+A G+ NVGKS++LN L V S K G T+ LG K + +D PG
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGT-KVSIISPKAGTTR---MRVLGVKNIPNEAQIIFLDTPG 68
Query: 148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-Y 206
+ + + E+ K+ + + +ID G +PRD E+ + K
Sbjct: 69 IYEPKKSDVLGHSMVEIAKQSLE---EADVILFMIDATEGWRPRDEEIYQNFIKPLNKPV 125
Query: 207 QVVLTKTDTVFP 218
VV+ K D + P
Sbjct: 126 IVVINKIDKIGP 137
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 80 AAKVSSSFPAPDL--PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK 135
A +V P DL P + AG NVGKS++L ALT + + P T+ IN F+
Sbjct: 153 AREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEI--ASYPFTTRGINVGQFE 210
Query: 136 LGT-KLCLVDLPG 147
G + ++D PG
Sbjct: 211 DGYFRYQIIDTPG 223
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 26/151 (17%)
Query: 80 AAKVSSSFPAPDLPE-------IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
AA++S D E +A GR NVGKSS+LNA ++ + T D PG T+ +
Sbjct: 205 AAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVT-DLPGTTRDVV 263
Query: 133 FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLL-IDTKWGV 188
+L G + ++D G E D E++ E + + LL ID G
Sbjct: 264 ESQLVVGGIPVQVLDTAGI------RETSDQVEKIGVERSRQAANTADLVLLTIDAATGW 317
Query: 189 KPRDHELISLMERSQTKYQ---VVLTKTDTV 216
D E+ Q K++ +V+ K D V
Sbjct: 318 TTGDQEI-----YEQVKHRPLILVMNKIDLV 343
>pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted
Gtpase
Length = 307
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 97 FAGRSNVGKSSMLNALTRQWGV 118
FAG+S VGKSS+LNA++ + G+
Sbjct: 178 FAGQSGVGKSSLLNAISPELGL 199
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---KPGLTQTINFFKLGTKLCLVDLPG 147
L + G N GKS+++N L + R S +PG+T+ I +F L + ++D PG
Sbjct: 99 LARVLIVGVPNTGKSTIINKLKGK----RASSVGAQPGITKGIQWFSLENGVKILDTPG 153
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 11/62 (17%)
Query: 92 LPEIAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLTQTINFFKLGTKLCLVDL 145
L +A G NVGK+++ NALT RQ W V K G+ + + +VDL
Sbjct: 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE-----KEFLVVDL 57
Query: 146 PG 147
PG
Sbjct: 58 PG 59
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGT-KLCLVDLPGYGFA 151
IA GR NVGKS++LN L Q + TS K T + + G + VD PG
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQ-KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM- 65
Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLI--DTKWGVKPRDHELISLMERSQTKYQVV 209
E K A L+ + S+ + + + + T+W P D +++ + + +
Sbjct: 66 ----EEKRAINRLMNKAASSSIGDVELVIFVVEGTRW--TPDDEMVLNKLREGKAPVILA 119
Query: 210 LTKTDTV 216
+ K D V
Sbjct: 120 VNKVDNV 126
>pdb|2YKR|W Chain W, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
Length = 350
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 97 FAGRSNVGKSSMLNALTRQWGVVRT---SDKPGLTQ 129
FAG+S VGKSS+LNAL + T SD GL Q
Sbjct: 212 FAGQSGVGKSSLLNALLGLQKEILTNDVSDNSGLGQ 247
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGT-KLCLVDLPGYGFA 151
IA GR NVGKS++LN L Q + TS K T + + G + VD PG
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQ-KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM- 68
Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLI--DTKWGVKPRDHELISLMERSQTKYQVV 209
E K A L+ + S+ + + + + T+W P D +++ + + +
Sbjct: 69 ----EEKRAINRLMNKAASSSIGDVELVIFVVEGTRW--TPDDEMVLNKLREGKAPVILA 122
Query: 210 LTKTDTV 216
+ K D V
Sbjct: 123 VNKVDNV 129
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 21/131 (16%)
Query: 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYG 149
P +A GR NVGKS++ N + + + D PG+T+ + L L+D G
Sbjct: 24 PVVAIVGRPNVGKSTIFNRIAGER-ISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGID 82
Query: 150 ------FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ 203
A +++ + A +E + +++ + GV D E+ ++ R++
Sbjct: 83 IGDEPFLAQIRQQAEIAMDE-----------ADVIIFMVNGREGVTAADEEVAKILYRTK 131
Query: 204 TKYQVVLTKTD 214
+ + K D
Sbjct: 132 KPVVLAVNKLD 142
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 16/131 (12%)
Query: 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVDLPGYGF 150
+ GR NVGKSS++NA+ + V+ S+ G T+ +F + +VD G
Sbjct: 197 QFCLIGRPNVGKSSLVNAMLGEERVI-VSNVAGTTRDAVDTSFTYNQQEFVIVDTAGM-- 253
Query: 151 AYAKEEVKDAWEELVKEYVSTRV--SLKR---VCLLIDTKWGVKPRDHELISLMERSQTK 205
K E ++Y R ++ R V +++D + G+ +D + +
Sbjct: 254 -----RKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA 308
Query: 206 YQVVLTKTDTV 216
+V+ K D V
Sbjct: 309 VVIVVNKWDAV 319
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 97 FAGRSNVGKSSMLNALTRQWGVVRTSD 123
FAG+S VGKSS+LNAL + T+D
Sbjct: 220 FAGQSGVGKSSLLNALLGLQNEILTND 246
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPG-Y 148
+ EIA G N GK+S+ N +T R + PG+T + K L + DLPG Y
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQ--RVGNWPGVTVERKSGLVKKNKDLEIQDLPGIY 60
Query: 149 GFA-YAKEE 156
+ Y+ EE
Sbjct: 61 SMSPYSPEE 69
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPG-Y 148
+ EIA G N GK+S+ N +T R + PG+T + K L + DLPG Y
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQ--RVGNWPGVTVERKSGLVKKNKDLEIQDLPGIY 60
Query: 149 GFAYAKEEVKDAWEELVKE 167
+ E K A + L+ +
Sbjct: 61 SMSPYSPEAKVARDYLLSQ 79
>pdb|4A2I|V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
Length = 277
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 15/16 (93%)
Query: 97 FAGRSNVGKSSMLNAL 112
FAG+S VGKSS+LNAL
Sbjct: 165 FAGQSGVGKSSLLNAL 180
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----------FFKLGTK---LC 141
+ G S +GKS+++N+L + + + PG + I K G L
Sbjct: 11 LMVVGESGLGKSTLINSLF--LTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLT 68
Query: 142 LVDLPGYGFAYAK----EEVKDAWEELVKEYVSTRVSLKR---------VCL--LIDTKW 186
+VD PG+G A + V D + ++Y++ + R CL + +
Sbjct: 69 IVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH 128
Query: 187 GVKPRDHELISLMERSQTKYQVV--LTKTDTVFPIDVARRAMQIEESLKAN 235
G+KP D I M+R K ++ + K DT+ P + + QI + ++ +
Sbjct: 129 GLKPLD---IEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEH 176
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 86 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGV 118
SF P +A GRS GKS++ N TR + V
Sbjct: 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV 395
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 96 AFAGRSNVGKSSMLNALT--RQWGVVRTSDK----PGLTQTINFFKLGTKLCLVDLPGYG 149
AG S VGKSS+LNA+ + V S+K T T K +VD PG
Sbjct: 173 TMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPG-- 230
Query: 150 FAYAKEEVKDAWEELVKEY 168
+A E+ D E +K Y
Sbjct: 231 --FANLEINDIEPEELKHY 247
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----------FFKLGTK---LC 141
+ G S +GKS+++N+L + + + PG + I K G L
Sbjct: 6 LMVVGESGLGKSTLINSLF--LTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLT 63
Query: 142 LVDLPGYGFAYAK----EEVKDAWEELVKEYVSTRVSLKR---------VCL--LIDTKW 186
+VD PG+G A + V D + ++Y++ + R CL + +
Sbjct: 64 IVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH 123
Query: 187 GVKPRDHELISLMERSQTKYQVV--LTKTDTVFPIDVARRAMQIEESLKAN 235
G+KP D I M+R K ++ + K DT+ P + + QI + ++ +
Sbjct: 124 GLKPLD---IEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEH 171
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPG 147
+ EIA G N GK+S+ N +T R + PG+T + K L + DLPG
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQ--RVGNWPGVTVERKSGLVKKNKDLEIQDLPG 58
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ 129
P +A GR NVGKS++ N + + + D PG+T+
Sbjct: 4 PVVAIVGRPNVGKSTIFNRIAGER-ISIVEDTPGVTR 39
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 14/73 (19%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQ------WGVVRTSDKPGLTQTINFFKLGTKLCLVDL 145
+ EIA G N GK+S+ N +T W V K GL K L + DL
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVSVERKSGLV------KKNKDLEIQDL 56
Query: 146 PG-YGFA-YAKEE 156
PG Y + Y+ EE
Sbjct: 57 PGIYSMSPYSPEE 69
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 94 EIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
++ G +NVGKS+ +N +++ V+ TS PG T + L + L D PG
Sbjct: 162 DVYVVGCTNVGKSTFINRXIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPG 220
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 14/73 (19%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQ------WGVVRTSDKPGLTQTINFFKLGTKLCLVDL 145
+ EIA G N GK+S+ N +T W V K GL K L + DL
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVERKSGLV------KKNKDLEIQDL 56
Query: 146 PG-YGFA-YAKEE 156
PG Y + Y+ EE
Sbjct: 57 PGIYSMSPYSPEE 69
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 94 EIAFAGRSNVGKSSMLNAL----TRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
++ G +NVGKS+ +N + T + V+ TS PG T + L + L D PG
Sbjct: 164 DVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPG 221
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 19/139 (13%)
Query: 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYA 153
AG+ N GKS++LN L Q + S PG T+ F T L D G
Sbjct: 238 IAGKPNAGKSTLLNTLLGQERAI-VSHMPGTTRDYIEECFIHDKTMFRLTDTAG------ 290
Query: 154 KEEVKDAWEELVKEYV-STRVSLKRVCLLID-TKWGVKPRDHELISLME----RSQTKYQ 207
+++A EE+ E + +R+ + L++ G + D EL + E K+
Sbjct: 291 ---LREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFL 347
Query: 208 VVLTKTDTVFPIDVARRAM 226
V K D D RA+
Sbjct: 348 TVANKLDRAANADALIRAI 366
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 99 GRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLC-LVDLPGYGFAYAKE 155
G N GK+++ NALT R + PG+T + F LG L + DLPG A
Sbjct: 8 GNPNCGKTTLFNALTN--ANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANA 65
Query: 156 EVKDAWEELVKEYVSTRVSLKRVCLL 181
E E++ + V + L+ C++
Sbjct: 66 EGISQDEQIAAQSV---IDLEYDCII 88
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 74/174 (42%), Gaps = 41/174 (23%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----------FFKLGTK---LC 141
+ G S +GKS+++N+L + + + PG + I K G L
Sbjct: 34 LMVVGESGLGKSTLINSLF--LTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLT 91
Query: 142 LVDLPGYGFAYAKEEVKDAWEELV-------KEYVSTRVSLKR---------VCL--LID 183
+VD PG+G A + + W+ ++ ++Y++ + R CL +
Sbjct: 92 IVDTPGFGDAV---DNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 148
Query: 184 TKWGVKPRDHELISLMERSQTKYQVV--LTKTDTVFPIDVARRAMQIEESLKAN 235
+ G+KP D I M+R K ++ + K DT+ P + + QI + ++ +
Sbjct: 149 SGHGLKPLD---IEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEH 199
>pdb|1VDR|A Chain A, Dihydrofolate Reductase
pdb|1VDR|B Chain B, Dihydrofolate Reductase
Length = 162
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 207 QVVLTKTDTVFPIDVARRAMQIEESLKANNSL 238
Q+V+++++ F +D A RA +EE++ SL
Sbjct: 61 QIVMSRSERSFSVDTAHRAASVEEAVDIAASL 92
>pdb|2JYB|A Chain A, Binary Hvdhfr1:folate Complex
pdb|2ITH|A Chain A, Nmr Structure Of Haloferax Volcanii Dhfr
Length = 162
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 207 QVVLTKTDTVFPIDVARRAMQIEESLKANNSL 238
Q+V+++++ F +D A RA +EE++ SL
Sbjct: 61 QIVMSRSERSFSVDTAHRAASVEEAVDIAASL 92
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYG 149
+ ++ G N GKSS+L A+TR + L+ + ++ + L D+P G
Sbjct: 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIP--G 214
Query: 150 FAYAKEEVKDAWEELVKEYVSTRVSL 175
E K E ++ TRV L
Sbjct: 215 IIEGASEGKGLGLEFLRHIARTRVLL 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,079,929
Number of Sequences: 62578
Number of extensions: 218020
Number of successful extensions: 699
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 72
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)