Query 026112
Match_columns 243
No_of_seqs 233 out of 2755
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 03:55:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0486 ThdF Predicted GTPase 100.0 1.7E-30 3.6E-35 227.3 13.4 194 12-220 142-341 (454)
2 COG0218 Predicted GTPase [Gene 100.0 3.3E-29 7.1E-34 197.9 17.2 161 77-237 9-169 (200)
3 COG2262 HflX GTPases [General 99.9 1.2E-25 2.5E-30 193.8 13.8 202 7-220 108-321 (411)
4 TIGR03598 GTPase_YsxC ribosome 99.9 1.8E-24 3.9E-29 172.5 17.7 158 86-243 12-171 (179)
5 TIGR03156 GTP_HflX GTP-binding 99.9 3.4E-25 7.4E-30 193.6 13.8 201 7-219 105-317 (351)
6 PRK11058 GTPase HflX; Provisio 99.9 6.1E-25 1.3E-29 196.1 13.9 200 7-218 113-324 (426)
7 PRK05291 trmE tRNA modificatio 99.9 3.5E-24 7.5E-29 193.1 14.9 193 10-218 138-336 (449)
8 COG1159 Era GTPase [General fu 99.9 4.5E-24 9.8E-29 177.5 14.3 143 93-243 7-153 (298)
9 TIGR00450 mnmE_trmE_thdF tRNA 99.9 6.9E-24 1.5E-28 190.3 16.2 193 10-218 130-325 (442)
10 PRK00454 engB GTP-binding prot 99.9 1.3E-22 2.9E-27 163.4 19.8 167 76-242 8-174 (196)
11 PF02421 FeoB_N: Ferrous iron 99.9 2.9E-24 6.2E-29 166.2 7.6 138 93-242 1-141 (156)
12 COG1160 Predicted GTPases [Gen 99.9 2.8E-23 6.1E-28 181.6 13.9 121 93-218 4-127 (444)
13 COG1160 Predicted GTPases [Gen 99.9 9.4E-22 2E-26 172.1 14.4 142 91-236 177-324 (444)
14 TIGR00436 era GTP-binding prot 99.9 3E-21 6.6E-26 163.6 16.4 125 94-225 2-129 (270)
15 KOG1191 Mitochondrial GTPase [ 99.9 1.4E-21 3E-26 171.3 10.9 177 33-218 211-404 (531)
16 cd01876 YihA_EngB The YihA (En 99.9 4.6E-20 9.9E-25 143.8 17.6 148 95-242 2-151 (170)
17 PF01926 MMR_HSR1: 50S ribosom 99.9 1.4E-20 3E-25 139.5 12.4 113 94-212 1-116 (116)
18 PRK00089 era GTPase Era; Revie 99.8 6.5E-20 1.4E-24 157.1 17.2 132 93-230 6-141 (292)
19 PRK12298 obgE GTPase CgtA; Rev 99.8 7.5E-20 1.6E-24 161.8 15.6 141 94-243 161-314 (390)
20 COG1084 Predicted GTPase [Gene 99.8 1.6E-19 3.5E-24 151.8 16.4 133 89-229 165-306 (346)
21 PRK15494 era GTPase Era; Provi 99.8 1E-19 2.2E-24 158.8 15.4 142 91-243 51-197 (339)
22 cd04171 SelB SelB subfamily. 99.8 2.8E-19 6.1E-24 139.4 16.5 137 94-243 2-147 (164)
23 PRK04213 GTP-binding protein; 99.8 3.8E-19 8.2E-24 144.0 17.2 138 91-233 8-158 (201)
24 PRK00093 GTP-binding protein D 99.8 3.3E-19 7.2E-24 160.7 17.6 140 91-233 172-314 (435)
25 PRK12299 obgE GTPase CgtA; Rev 99.8 2.4E-19 5.2E-24 155.7 14.9 142 92-243 158-309 (335)
26 cd01894 EngA1 EngA1 subfamily. 99.8 4.4E-19 9.6E-24 137.1 14.5 120 96-221 1-123 (157)
27 TIGR03594 GTPase_EngA ribosome 99.8 7.7E-19 1.7E-23 158.1 17.8 149 91-242 171-324 (429)
28 PRK12297 obgE GTPase CgtA; Rev 99.8 2.8E-19 6E-24 159.2 14.6 116 94-217 160-288 (424)
29 PRK03003 GTP-binding protein D 99.8 5.3E-19 1.1E-23 160.8 16.2 140 91-233 210-352 (472)
30 TIGR03594 GTPase_EngA ribosome 99.8 4.5E-19 9.8E-24 159.6 15.2 120 94-219 1-123 (429)
31 cd01898 Obg Obg subfamily. Th 99.8 2E-19 4.3E-24 141.4 11.3 123 94-224 2-135 (170)
32 cd01897 NOG NOG1 is a nucleola 99.8 1.1E-18 2.4E-23 136.9 14.8 125 93-223 1-133 (168)
33 PRK12296 obgE GTPase CgtA; Rev 99.8 5.5E-19 1.2E-23 159.3 14.6 141 92-243 159-321 (500)
34 cd01878 HflX HflX subfamily. 99.8 1.1E-18 2.4E-23 141.7 15.0 125 90-221 39-171 (204)
35 TIGR02729 Obg_CgtA Obg family 99.8 5E-19 1.1E-23 153.5 13.4 141 92-243 157-310 (329)
36 cd01895 EngA2 EngA2 subfamily. 99.8 2.2E-18 4.7E-23 135.1 15.8 139 92-233 2-145 (174)
37 PRK03003 GTP-binding protein D 99.8 1.1E-18 2.3E-23 158.8 16.1 121 91-217 37-160 (472)
38 cd04163 Era Era subfamily. Er 99.8 3.3E-18 7.1E-23 132.9 16.3 132 92-229 3-138 (168)
39 cd01889 SelB_euk SelB subfamil 99.8 1.5E-18 3.3E-23 139.7 14.3 126 93-231 1-148 (192)
40 PRK00093 GTP-binding protein D 99.8 2.8E-18 6E-23 154.8 16.4 119 93-217 2-123 (435)
41 cd01852 AIG1 AIG1 (avrRpt2-ind 99.8 3.2E-18 6.8E-23 138.4 14.4 138 94-236 2-153 (196)
42 cd01884 EF_Tu EF-Tu subfamily. 99.8 4.8E-18 1E-22 137.2 15.2 131 93-236 3-152 (195)
43 cd04164 trmE TrmE (MnmE, ThdF, 99.8 3.3E-18 7E-23 132.1 13.7 121 92-220 1-124 (157)
44 PRK09518 bifunctional cytidyla 99.8 4.5E-18 9.8E-23 161.5 17.3 123 90-218 273-398 (712)
45 PRK09518 bifunctional cytidyla 99.8 6.3E-18 1.4E-22 160.5 17.3 128 90-220 448-578 (712)
46 cd00881 GTP_translation_factor 99.8 4.2E-18 9.2E-23 135.7 13.7 129 94-235 1-146 (189)
47 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 8.9E-18 1.9E-22 131.6 14.8 111 93-218 1-117 (168)
48 cd04166 CysN_ATPS CysN_ATPS su 99.8 5.2E-18 1.1E-22 138.4 13.7 136 94-243 1-175 (208)
49 cd01879 FeoB Ferrous iron tran 99.8 4.4E-18 9.6E-23 131.9 12.1 134 97-242 1-137 (158)
50 cd01850 CDC_Septin CDC/Septin. 99.8 3.9E-17 8.5E-22 138.6 18.1 148 92-241 4-181 (276)
51 PF00009 GTP_EFTU: Elongation 99.8 1.9E-17 4.2E-22 132.9 14.5 127 92-232 3-150 (188)
52 cd01881 Obg_like The Obg-like 99.8 5.8E-18 1.3E-22 133.5 10.1 119 97-223 1-140 (176)
53 cd01853 Toc34_like Toc34-like 99.8 6.7E-17 1.5E-21 135.0 16.8 127 91-219 30-165 (249)
54 PRK09554 feoB ferrous iron tra 99.7 2.5E-17 5.4E-22 156.5 14.9 139 93-242 4-148 (772)
55 cd01891 TypA_BipA TypA (tyrosi 99.7 5.3E-17 1.1E-21 131.0 14.4 111 93-217 3-131 (194)
56 cd01886 EF-G Elongation factor 99.7 3.8E-17 8.2E-22 138.2 13.8 136 94-243 1-156 (270)
57 cd01890 LepA LepA subfamily. 99.7 5.9E-17 1.3E-21 128.4 14.0 111 94-217 2-133 (179)
58 CHL00071 tufA elongation facto 99.7 8.3E-17 1.8E-21 143.9 16.2 133 91-236 11-162 (409)
59 TIGR00475 selB selenocysteine- 99.7 9.1E-17 2E-21 149.1 16.7 137 94-243 2-147 (581)
60 cd04104 p47_IIGP_like p47 (47- 99.7 1.3E-16 2.7E-21 129.2 14.7 116 93-218 2-122 (197)
61 PRK12317 elongation factor 1-a 99.7 6.3E-17 1.4E-21 145.5 14.2 140 91-243 5-186 (425)
62 KOG2486 Predicted GTPase [Gene 99.7 5.1E-17 1.1E-21 133.7 11.0 134 85-218 129-263 (320)
63 PRK10512 selenocysteinyl-tRNA- 99.7 2.8E-16 6.1E-21 146.3 16.9 137 94-243 2-147 (614)
64 PRK12736 elongation factor Tu; 99.7 2.6E-16 5.6E-21 140.1 15.8 134 90-236 10-162 (394)
65 cd04168 TetM_like Tet(M)-like 99.7 2.4E-16 5.1E-21 131.1 14.5 133 94-240 1-152 (237)
66 PRK12735 elongation factor Tu; 99.7 3.7E-16 8.1E-21 139.2 16.4 133 91-236 11-162 (396)
67 KOG1489 Predicted GTP-binding 99.7 5.2E-17 1.1E-21 135.9 10.0 141 91-243 195-348 (366)
68 cd00880 Era_like Era (E. coli 99.7 5.1E-16 1.1E-20 119.1 14.7 121 97-224 1-125 (163)
69 PLN03127 Elongation factor Tu; 99.7 4.5E-16 9.8E-21 140.2 16.3 132 90-234 59-209 (447)
70 cd04156 ARLTS1 ARLTS1 subfamil 99.7 1.5E-16 3.3E-21 123.7 11.3 110 94-217 1-115 (160)
71 cd01888 eIF2_gamma eIF2-gamma 99.7 5.6E-16 1.2E-20 126.0 14.8 137 94-243 2-180 (203)
72 cd04169 RF3 RF3 subfamily. Pe 99.7 5.3E-16 1.1E-20 131.1 15.1 136 93-242 3-162 (267)
73 cd01883 EF1_alpha Eukaryotic e 99.7 4.4E-16 9.6E-21 128.1 13.6 137 94-243 1-186 (219)
74 TIGR00485 EF-Tu translation el 99.7 5.9E-16 1.3E-20 137.9 15.5 133 91-236 11-162 (394)
75 KOG0410 Predicted GTP binding 99.7 3.1E-17 6.7E-22 137.5 6.5 195 9-216 97-307 (410)
76 cd04154 Arl2 Arl2 subfamily. 99.7 3.7E-16 7.9E-21 123.6 12.1 113 91-218 13-130 (173)
77 cd04145 M_R_Ras_like M-Ras/R-R 99.7 4.6E-16 9.9E-21 121.3 12.4 110 93-218 3-122 (164)
78 PRK05306 infB translation init 99.7 6.3E-16 1.4E-20 146.5 15.3 113 90-217 288-403 (787)
79 COG3596 Predicted GTPase [Gene 99.7 3E-16 6.5E-21 129.4 11.2 121 91-218 38-163 (296)
80 PRK09866 hypothetical protein; 99.7 2.6E-15 5.7E-20 137.0 18.4 98 138-243 230-334 (741)
81 COG0370 FeoB Fe2+ transport sy 99.7 3.2E-16 6.9E-21 143.2 12.4 130 93-233 4-138 (653)
82 PRK00049 elongation factor Tu; 99.7 1.3E-15 2.9E-20 135.6 16.0 132 91-235 11-161 (396)
83 TIGR00487 IF-2 translation ini 99.7 1.4E-15 3E-20 140.9 16.5 113 90-217 85-201 (587)
84 PLN03126 Elongation factor Tu; 99.7 1.3E-15 2.9E-20 137.9 16.0 133 90-235 79-230 (478)
85 COG0536 Obg Predicted GTPase [ 99.7 3.1E-16 6.8E-21 132.6 10.8 131 93-231 160-304 (369)
86 cd04136 Rap_like Rap-like subf 99.7 5.7E-16 1.2E-20 120.7 11.6 110 93-218 2-121 (163)
87 cd01866 Rab2 Rab2 subfamily. 99.7 1.1E-15 2.4E-20 120.3 13.1 136 92-242 4-146 (168)
88 cd04124 RabL2 RabL2 subfamily. 99.7 1.5E-15 3.2E-20 118.7 13.5 112 93-217 1-118 (161)
89 cd01861 Rab6 Rab6 subfamily. 99.7 7.7E-16 1.7E-20 119.8 11.7 109 94-217 2-119 (161)
90 cd01885 EF2 EF2 (for archaea a 99.7 3.8E-15 8.2E-20 122.5 16.3 125 94-232 2-160 (222)
91 cd00154 Rab Rab family. Rab G 99.7 1.1E-15 2.3E-20 117.7 12.4 110 93-216 1-118 (159)
92 cd00878 Arf_Arl Arf (ADP-ribos 99.7 5E-16 1.1E-20 120.7 10.6 111 94-219 1-116 (158)
93 cd04160 Arfrp1 Arfrp1 subfamil 99.7 3.8E-16 8.3E-21 122.3 9.8 112 94-218 1-122 (167)
94 cd04157 Arl6 Arl6 subfamily. 99.7 7.4E-16 1.6E-20 119.9 11.4 111 94-218 1-119 (162)
95 cd04138 H_N_K_Ras_like H-Ras/N 99.7 1.5E-15 3.2E-20 117.9 12.8 110 93-218 2-121 (162)
96 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 1E-15 2.3E-20 121.2 12.1 111 92-217 15-130 (174)
97 cd01868 Rab11_like Rab11-like. 99.7 1.9E-15 4.2E-20 118.2 13.5 111 93-218 4-123 (165)
98 cd04149 Arf6 Arf6 subfamily. 99.7 8.4E-16 1.8E-20 121.2 11.3 111 92-217 9-124 (168)
99 cd04165 GTPBP1_like GTPBP1-lik 99.7 6.1E-15 1.3E-19 121.6 16.7 128 94-234 1-169 (224)
100 CHL00189 infB translation init 99.7 1.1E-15 2.4E-20 143.8 13.8 113 90-217 242-361 (742)
101 cd01867 Rab8_Rab10_Rab13_like 99.7 2E-15 4.4E-20 118.6 13.2 114 92-218 3-123 (167)
102 cd04105 SR_beta Signal recogni 99.7 2.7E-15 5.8E-20 122.0 13.9 125 93-232 1-138 (203)
103 cd04106 Rab23_lke Rab23-like s 99.7 2.9E-15 6.2E-20 116.7 13.6 111 94-219 2-122 (162)
104 KOG1423 Ras-like GTPase ERA [C 99.7 1.4E-15 3E-20 126.8 12.3 128 91-220 71-202 (379)
105 TIGR00491 aIF-2 translation in 99.7 3E-15 6.6E-20 138.5 15.9 111 91-217 3-135 (590)
106 TIGR02528 EutP ethanolamine ut 99.7 8.1E-16 1.7E-20 117.5 10.2 101 94-217 2-102 (142)
107 PF04548 AIG1: AIG1 family; I 99.7 2.9E-15 6.2E-20 122.6 13.9 140 94-237 2-155 (212)
108 cd04119 RJL RJL (RabJ-Like) su 99.7 1.2E-15 2.6E-20 119.2 11.2 112 93-217 1-124 (168)
109 cd04151 Arl1 Arl1 subfamily. 99.7 1.1E-15 2.5E-20 118.9 10.8 110 94-218 1-115 (158)
110 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 3.6E-15 7.8E-20 116.8 13.8 111 93-218 3-122 (166)
111 cd01865 Rab3 Rab3 subfamily. 99.6 3E-15 6.6E-20 117.3 13.0 114 93-219 2-122 (165)
112 PRK00007 elongation factor G; 99.6 2.2E-15 4.7E-20 142.8 14.4 131 91-235 9-158 (693)
113 KOG1490 GTP-binding protein CR 99.6 1E-15 2.2E-20 134.8 11.2 147 84-236 158-314 (620)
114 TIGR00991 3a0901s02IAP34 GTP-b 99.6 3.6E-15 7.8E-20 126.8 14.2 123 91-218 37-168 (313)
115 smart00178 SAR Sar1p-like memb 99.6 2.5E-15 5.4E-20 120.2 12.4 112 91-217 16-132 (184)
116 TIGR00437 feoB ferrous iron tr 99.6 1.4E-15 3E-20 141.4 12.5 132 99-242 1-135 (591)
117 PRK04004 translation initiatio 99.6 7E-15 1.5E-19 136.4 17.0 110 91-216 5-136 (586)
118 PLN03118 Rab family protein; P 99.6 4.8E-15 1E-19 121.1 14.1 114 91-218 13-135 (211)
119 cd01864 Rab19 Rab19 subfamily. 99.6 5.7E-15 1.2E-19 115.6 13.9 114 92-218 3-123 (165)
120 smart00173 RAS Ras subfamily o 99.6 1.7E-15 3.6E-20 118.3 10.9 110 93-218 1-120 (164)
121 cd04175 Rap1 Rap1 subgroup. T 99.6 1.4E-15 3.1E-20 118.9 10.4 110 93-218 2-121 (164)
122 smart00175 RAB Rab subfamily o 99.6 5.1E-15 1.1E-19 115.3 13.5 111 93-218 1-120 (164)
123 TIGR00484 EF-G translation elo 99.6 4.1E-15 9E-20 141.0 15.4 132 91-236 9-159 (689)
124 cd01893 Miro1 Miro1 subfamily. 99.6 3.4E-15 7.3E-20 117.3 12.4 110 94-219 2-119 (166)
125 cd04170 EF-G_bact Elongation f 99.6 3.4E-15 7.4E-20 126.4 13.3 127 94-234 1-146 (268)
126 PRK05506 bifunctional sulfate 99.6 2E-15 4.3E-20 142.0 12.9 139 91-243 23-202 (632)
127 cd01860 Rab5_related Rab5-rela 99.6 3E-15 6.4E-20 116.7 11.9 112 93-217 2-120 (163)
128 cd04127 Rab27A Rab27a subfamil 99.6 4.8E-15 1E-19 117.6 13.2 114 92-218 4-135 (180)
129 TIGR00231 small_GTP small GTP- 99.6 3E-15 6.4E-20 114.8 11.6 118 93-219 2-124 (161)
130 PRK15467 ethanolamine utilizat 99.6 2.9E-15 6.3E-20 117.0 11.6 103 94-217 3-105 (158)
131 cd04150 Arf1_5_like Arf1-Arf5- 99.6 2.7E-15 5.8E-20 117.2 11.3 111 93-218 1-116 (159)
132 cd04122 Rab14 Rab14 subfamily. 99.6 7E-15 1.5E-19 115.3 13.7 111 93-219 3-123 (166)
133 cd04161 Arl2l1_Arl13_like Arl2 99.6 4.8E-15 1E-19 116.7 12.8 111 94-219 1-116 (167)
134 cd01863 Rab18 Rab18 subfamily. 99.6 3.1E-15 6.7E-20 116.4 11.5 112 93-217 1-120 (161)
135 TIGR00483 EF-1_alpha translati 99.6 7.7E-15 1.7E-19 132.1 15.4 134 90-236 5-176 (426)
136 cd04113 Rab4 Rab4 subfamily. 99.6 3.1E-15 6.7E-20 116.5 11.3 113 93-218 1-120 (161)
137 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 5.2E-15 1.1E-19 119.9 13.0 110 93-217 1-124 (201)
138 PRK12739 elongation factor G; 99.6 3.6E-15 7.8E-20 141.4 13.7 131 91-235 7-156 (691)
139 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 5.3E-15 1.1E-19 116.2 12.5 111 95-219 2-115 (164)
140 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 3.5E-15 7.7E-20 119.2 11.6 111 93-217 4-123 (183)
141 TIGR03680 eif2g_arch translati 99.6 5.4E-15 1.2E-19 132.2 13.7 140 91-243 3-177 (406)
142 PRK05124 cysN sulfate adenylyl 99.6 9.3E-15 2E-19 132.7 15.4 140 91-243 26-206 (474)
143 cd01862 Rab7 Rab7 subfamily. 99.6 7.9E-15 1.7E-19 115.2 13.1 110 93-217 1-123 (172)
144 cd04139 RalA_RalB RalA/RalB su 99.6 4.4E-15 9.5E-20 115.6 11.5 109 93-217 1-119 (164)
145 cd04140 ARHI_like ARHI subfami 99.6 8.7E-15 1.9E-19 114.7 13.2 113 93-218 2-123 (165)
146 cd04142 RRP22 RRP22 subfamily. 99.6 1.2E-14 2.6E-19 117.7 14.2 118 94-218 2-131 (198)
147 cd01882 BMS1 Bms1. Bms1 is an 99.6 2.8E-14 6E-19 117.8 16.3 125 91-233 38-164 (225)
148 PF00735 Septin: Septin; Inte 99.6 9.7E-15 2.1E-19 124.0 13.8 147 93-241 5-180 (281)
149 cd04118 Rab24 Rab24 subfamily. 99.6 7.6E-15 1.6E-19 118.0 12.5 111 93-218 1-120 (193)
150 cd01896 DRG The developmentall 99.6 1.1E-14 2.4E-19 120.8 13.8 86 94-187 2-90 (233)
151 cd04159 Arl10_like Arl10-like 99.6 8.3E-15 1.8E-19 112.8 12.1 110 95-219 2-117 (159)
152 cd04115 Rab33B_Rab33A Rab33B/R 99.6 1.6E-14 3.4E-19 113.9 13.8 116 92-219 2-125 (170)
153 PTZ00369 Ras-like protein; Pro 99.6 7.1E-15 1.5E-19 118.0 12.0 114 92-218 5-125 (189)
154 cd04155 Arl3 Arl3 subfamily. 99.6 7.5E-15 1.6E-19 115.7 11.9 115 90-219 12-131 (173)
155 TIGR02034 CysN sulfate adenyly 99.6 1.4E-14 3.1E-19 129.4 15.0 137 94-243 2-178 (406)
156 PRK09601 GTP-binding protein Y 99.6 1.1E-14 2.4E-19 126.8 13.8 85 93-185 3-107 (364)
157 PTZ00133 ADP-ribosylation fact 99.6 7E-15 1.5E-19 117.5 11.6 111 92-217 17-132 (182)
158 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 1.9E-14 4.1E-19 113.7 13.9 109 94-218 2-121 (170)
159 cd04176 Rap2 Rap2 subgroup. T 99.6 7E-15 1.5E-19 114.8 11.0 109 93-217 2-120 (163)
160 cd04101 RabL4 RabL4 (Rab-like4 99.6 2E-14 4.4E-19 112.1 13.6 112 94-219 2-123 (164)
161 smart00053 DYNc Dynamin, GTPas 99.6 5E-14 1.1E-18 116.7 16.4 125 91-219 25-208 (240)
162 cd04110 Rab35 Rab35 subfamily. 99.6 3E-14 6.5E-19 115.4 14.7 115 91-218 5-125 (199)
163 cd04123 Rab21 Rab21 subfamily. 99.6 1.6E-14 3.5E-19 112.0 12.7 111 93-218 1-120 (162)
164 cd04144 Ras2 Ras2 subfamily. 99.6 1.3E-14 2.8E-19 116.7 12.4 108 94-217 1-120 (190)
165 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 1.3E-14 2.8E-19 114.8 12.1 110 93-218 3-122 (172)
166 cd04112 Rab26 Rab26 subfamily. 99.6 2.2E-14 4.8E-19 115.3 13.6 110 93-217 1-120 (191)
167 cd04167 Snu114p Snu114p subfam 99.6 3.2E-14 6.9E-19 116.5 14.4 110 94-216 2-136 (213)
168 cd00157 Rho Rho (Ras homology) 99.6 1.1E-14 2.5E-19 114.2 11.2 113 93-221 1-122 (171)
169 cd04109 Rab28 Rab28 subfamily. 99.6 1.6E-14 3.4E-19 118.4 12.5 110 93-218 1-124 (215)
170 PRK04000 translation initiatio 99.6 2.1E-14 4.6E-19 128.4 14.0 141 90-243 7-182 (411)
171 cd04158 ARD1 ARD1 subfamily. 99.6 1.5E-14 3.2E-19 114.1 11.6 109 94-218 1-115 (169)
172 cd00877 Ran Ran (Ras-related n 99.6 1.8E-14 3.9E-19 113.3 12.0 112 93-217 1-118 (166)
173 PLN00223 ADP-ribosylation fact 99.6 3.9E-14 8.4E-19 113.1 14.1 113 92-219 17-134 (181)
174 cd04137 RheB Rheb (Ras Homolog 99.6 9.8E-15 2.1E-19 115.9 10.6 110 93-218 2-121 (180)
175 smart00177 ARF ARF-like small 99.6 2.5E-14 5.5E-19 113.5 12.8 111 92-218 13-129 (175)
176 PLN03110 Rab GTPase; Provision 99.6 2.7E-14 5.8E-19 117.2 13.2 113 91-218 11-132 (216)
177 cd04147 Ras_dva Ras-dva subfam 99.6 1.8E-14 3.9E-19 116.6 11.8 108 94-217 1-118 (198)
178 cd04116 Rab9 Rab9 subfamily. 99.6 2E-14 4.4E-19 113.0 11.9 112 91-217 4-128 (170)
179 cd00876 Ras Ras family. The R 99.6 1.2E-14 2.5E-19 112.6 10.3 109 94-218 1-119 (160)
180 PF05049 IIGP: Interferon-indu 99.6 9.2E-15 2E-19 127.4 10.1 141 92-243 35-194 (376)
181 cd04114 Rab30 Rab30 subfamily. 99.6 2.7E-14 5.8E-19 112.0 11.8 114 92-220 7-129 (169)
182 PRK00741 prfC peptide chain re 99.6 4.3E-14 9.3E-19 129.6 14.8 137 92-242 10-170 (526)
183 cd04132 Rho4_like Rho4-like su 99.6 2.3E-14 4.9E-19 114.6 11.4 110 93-218 1-120 (187)
184 cd04121 Rab40 Rab40 subfamily. 99.6 2.6E-14 5.6E-19 114.9 11.7 133 92-242 6-147 (189)
185 cd04146 RERG_RasL11_like RERG/ 99.6 1.2E-14 2.5E-19 113.9 9.4 109 94-217 1-120 (165)
186 COG0012 Predicted GTPase, prob 99.6 2.9E-14 6.4E-19 122.7 12.4 86 92-185 2-108 (372)
187 TIGR01394 TypA_BipA GTP-bindin 99.6 6.1E-14 1.3E-18 130.3 15.4 126 93-232 2-144 (594)
188 PLN03071 GTP-binding nuclear p 99.6 4.2E-14 9.1E-19 116.3 12.6 115 90-217 11-131 (219)
189 cd04177 RSR1 RSR1 subgroup. R 99.6 2.8E-14 6E-19 112.2 11.0 111 93-219 2-122 (168)
190 cd01874 Cdc42 Cdc42 subfamily. 99.6 3.1E-14 6.6E-19 113.0 11.3 110 93-218 2-120 (175)
191 TIGR01393 lepA GTP-binding pro 99.6 6.9E-14 1.5E-18 130.1 15.2 128 92-233 3-151 (595)
192 PRK10218 GTP-binding protein; 99.6 9.6E-14 2.1E-18 128.9 16.0 128 91-232 4-148 (607)
193 cd01899 Ygr210 Ygr210 subfamil 99.6 3.9E-14 8.5E-19 122.2 12.5 83 95-185 1-110 (318)
194 TIGR00503 prfC peptide chain r 99.6 6.2E-14 1.3E-18 128.6 14.4 133 92-238 11-166 (527)
195 PF09439 SRPRB: Signal recogni 99.6 1.1E-14 2.4E-19 115.2 8.3 129 92-234 3-143 (181)
196 cd04120 Rab12 Rab12 subfamily. 99.6 8.2E-14 1.8E-18 113.1 13.6 110 94-219 2-121 (202)
197 cd00879 Sar1 Sar1 subfamily. 99.6 4.1E-14 9E-19 113.3 11.7 111 92-217 19-134 (190)
198 smart00174 RHO Rho (Ras homolo 99.6 3.8E-14 8.2E-19 111.8 11.2 108 95-218 1-117 (174)
199 PTZ00141 elongation factor 1- 99.6 9.6E-14 2.1E-18 125.3 15.0 134 91-237 6-183 (446)
200 cd04134 Rho3 Rho3 subfamily. 99.6 6.6E-14 1.4E-18 112.4 12.5 111 94-220 2-121 (189)
201 cd04128 Spg1 Spg1p. Spg1p (se 99.6 1.4E-13 3.1E-18 109.9 14.3 110 93-216 1-117 (182)
202 cd04125 RabA_like RabA-like su 99.6 8.9E-14 1.9E-18 111.4 12.9 113 93-218 1-120 (188)
203 KOG1145 Mitochondrial translat 99.5 9.3E-14 2E-18 123.7 14.0 114 90-218 151-268 (683)
204 cd04117 Rab15 Rab15 subfamily. 99.5 1.3E-13 2.9E-18 107.7 13.4 111 94-219 2-121 (161)
205 KOG0084 GTPase Rab1/YPT1, smal 99.5 6.9E-14 1.5E-18 109.8 11.4 133 91-238 8-147 (205)
206 PLN03108 Rab family protein; P 99.5 1.3E-13 2.9E-18 112.6 13.5 113 92-217 6-125 (210)
207 TIGR00993 3a0901s04IAP86 chlor 99.5 6.5E-14 1.4E-18 128.3 12.7 125 92-218 118-251 (763)
208 cd04130 Wrch_1 Wrch-1 subfamil 99.5 3.1E-14 6.7E-19 112.5 9.4 110 93-218 1-119 (173)
209 PF10662 PduV-EutP: Ethanolami 99.5 9.4E-14 2E-18 105.5 11.3 100 93-216 2-102 (143)
210 cd04148 RGK RGK subfamily. Th 99.5 7.9E-14 1.7E-18 114.8 11.8 113 93-219 1-122 (221)
211 PRK13351 elongation factor G; 99.5 1.1E-13 2.3E-18 131.6 14.3 136 91-240 7-161 (687)
212 PTZ00327 eukaryotic translatio 99.5 1.1E-13 2.4E-18 124.8 13.4 140 91-243 33-214 (460)
213 cd04143 Rhes_like Rhes_like su 99.5 7.1E-14 1.5E-18 116.9 11.2 108 94-217 2-127 (247)
214 cd01892 Miro2 Miro2 subfamily. 99.5 1.5E-13 3.2E-18 108.4 12.2 113 91-218 3-123 (169)
215 PTZ00258 GTP-binding protein; 99.5 4.4E-14 9.5E-19 124.3 10.1 88 90-185 19-126 (390)
216 PRK05433 GTP-binding protein L 99.5 1.7E-13 3.7E-18 127.6 14.6 129 91-233 6-155 (600)
217 cd01871 Rac1_like Rac1-like su 99.5 1.6E-13 3.5E-18 108.8 12.2 109 93-217 2-119 (174)
218 cd04111 Rab39 Rab39 subfamily. 99.5 1.2E-13 2.5E-18 113.0 11.5 111 93-218 3-124 (211)
219 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 8.9E-14 1.9E-18 111.2 10.3 111 91-217 4-123 (182)
220 cd04102 RabL3 RabL3 (Rab-like3 99.5 2.9E-13 6.3E-18 109.8 13.4 113 93-218 1-144 (202)
221 cd04135 Tc10 TC10 subfamily. 99.5 1.7E-13 3.7E-18 108.0 11.7 110 93-218 1-119 (174)
222 PF00350 Dynamin_N: Dynamin fa 99.5 8.5E-14 1.8E-18 109.3 9.7 66 139-213 102-168 (168)
223 cd04131 Rnd Rnd subfamily. Th 99.5 1.4E-13 3E-18 109.7 10.8 109 93-217 2-119 (178)
224 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.5 3.1E-13 6.8E-18 111.8 13.0 111 91-217 12-131 (232)
225 COG0532 InfB Translation initi 99.5 3.3E-13 7.1E-18 120.5 13.9 113 91-218 4-122 (509)
226 KOG1547 Septin CDC10 and relat 99.5 5.6E-13 1.2E-17 107.9 13.9 148 92-241 46-222 (336)
227 cd04126 Rab20 Rab20 subfamily. 99.5 2.5E-13 5.5E-18 111.6 12.2 109 93-217 1-114 (220)
228 PTZ00416 elongation factor 2; 99.5 4.4E-13 9.6E-18 129.3 15.7 129 91-233 18-184 (836)
229 PLN00023 GTP-binding protein; 99.5 4.3E-13 9.3E-18 114.9 13.8 118 88-218 17-166 (334)
230 COG1163 DRG Predicted GTPase [ 99.5 5.8E-14 1.3E-18 118.2 8.2 109 86-203 57-168 (365)
231 cd01870 RhoA_like RhoA-like su 99.5 2.6E-13 5.6E-18 107.1 11.6 111 93-219 2-121 (175)
232 KOG0078 GTP-binding protein SE 99.5 1.9E-13 4E-18 108.7 10.4 134 90-242 10-154 (207)
233 cd01900 YchF YchF subfamily. 99.5 6.1E-14 1.3E-18 118.4 7.9 83 95-185 1-103 (274)
234 cd04133 Rop_like Rop subfamily 99.5 3.6E-13 7.8E-18 107.1 11.9 110 93-218 2-120 (176)
235 PF08477 Miro: Miro-like prote 99.5 1.2E-13 2.6E-18 102.3 8.3 108 94-214 1-119 (119)
236 KOG0092 GTPase Rab5/YPT51 and 99.5 5.4E-14 1.2E-18 110.0 6.5 133 92-239 5-144 (200)
237 cd01875 RhoG RhoG subfamily. 99.5 3.7E-13 8E-18 108.3 11.5 110 93-218 4-122 (191)
238 TIGR02836 spore_IV_A stage IV 99.5 4.2E-13 9E-18 117.2 12.4 124 91-216 16-193 (492)
239 cd00882 Ras_like_GTPase Ras-li 99.5 4.1E-13 8.8E-18 101.6 11.0 110 97-221 1-120 (157)
240 KOG0073 GTP-binding ADP-ribosy 99.5 7.7E-13 1.7E-17 100.9 11.9 112 92-218 16-132 (185)
241 COG5019 CDC3 Septin family pro 99.5 1.7E-12 3.7E-17 111.3 15.3 149 91-241 22-201 (373)
242 PLN00116 translation elongatio 99.5 1.2E-12 2.5E-17 126.6 16.0 112 91-216 18-163 (843)
243 KOG0394 Ras-related GTPase [Ge 99.5 2.9E-13 6.3E-18 105.1 9.5 135 90-237 7-152 (210)
244 PLN00043 elongation factor 1-a 99.5 1.1E-12 2.5E-17 118.3 14.7 133 91-236 6-182 (447)
245 PF00025 Arf: ADP-ribosylation 99.5 1.8E-13 4E-18 108.6 8.0 115 91-220 13-132 (175)
246 COG2229 Predicted GTPase [Gene 99.5 1.7E-12 3.8E-17 101.0 13.0 124 91-228 9-146 (187)
247 cd01858 NGP_1 NGP-1. Autoanti 99.5 1.7E-13 3.7E-18 106.8 7.3 57 91-148 101-157 (157)
248 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 1.6E-12 3.4E-17 107.0 13.4 110 93-218 2-120 (222)
249 cd04178 Nucleostemin_like Nucl 99.4 2.4E-13 5.1E-18 107.6 7.2 57 91-148 116-172 (172)
250 KOG2655 Septin family protein 99.4 4E-12 8.7E-17 109.7 15.1 148 91-240 20-195 (366)
251 cd04103 Centaurin_gamma Centau 99.4 1.1E-12 2.3E-17 102.5 10.2 105 94-216 2-112 (158)
252 TIGR03597 GTPase_YqeH ribosome 99.4 1.7E-13 3.6E-18 120.6 5.6 138 92-232 154-295 (360)
253 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.4 2.9E-12 6.4E-17 100.5 11.8 115 92-221 22-146 (221)
254 COG1100 GTPase SAR1 and relate 99.4 6.8E-12 1.5E-16 102.6 14.3 114 93-220 6-128 (219)
255 KOG0087 GTPase Rab11/YPT3, sma 99.4 3.9E-13 8.5E-18 106.6 6.6 113 91-217 13-133 (222)
256 COG5256 TEF1 Translation elong 99.4 5.1E-12 1.1E-16 109.8 14.0 129 91-232 6-176 (428)
257 KOG1954 Endocytosis/signaling 99.4 6.4E-12 1.4E-16 107.5 14.0 141 90-234 56-242 (532)
258 PRK09602 translation-associate 99.4 2.5E-12 5.5E-17 114.2 10.7 85 93-185 2-113 (396)
259 smart00176 RAN Ran (Ras-relate 99.4 3.7E-12 8E-17 103.3 10.7 107 98-217 1-113 (200)
260 COG4108 PrfC Peptide chain rel 99.4 3.7E-12 8.1E-17 111.0 10.6 135 93-242 13-172 (528)
261 TIGR00490 aEF-2 translation el 99.4 3.2E-12 6.9E-17 121.8 11.1 114 91-217 18-152 (720)
262 PRK07560 elongation factor EF- 99.4 1E-11 2.2E-16 118.7 14.0 112 91-216 19-152 (731)
263 KOG0098 GTPase Rab2, small G p 99.4 1E-11 2.2E-16 96.8 11.3 112 92-220 6-128 (216)
264 PF00071 Ras: Ras family; Int 99.4 5.5E-12 1.2E-16 98.1 9.8 109 94-218 1-119 (162)
265 PRK12740 elongation factor G; 99.3 1.1E-11 2.4E-16 117.6 13.1 123 98-234 1-142 (668)
266 PTZ00132 GTP-binding nuclear p 99.3 2.9E-11 6.4E-16 98.9 13.4 114 91-217 8-127 (215)
267 COG1161 Predicted GTPases [Gen 99.3 1.9E-12 4.2E-17 112.1 6.7 60 91-151 131-190 (322)
268 cd01873 RhoBTB RhoBTB subfamil 99.3 6.5E-12 1.4E-16 101.5 9.3 110 93-217 3-134 (195)
269 KOG1491 Predicted GTP-binding 99.3 1.9E-11 4.1E-16 103.6 12.3 87 91-185 19-125 (391)
270 KOG0095 GTPase Rab30, small G 99.3 3.4E-11 7.5E-16 90.6 11.9 114 92-222 7-131 (213)
271 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 3.1E-11 6.8E-16 99.5 12.9 130 94-232 1-140 (232)
272 cd04129 Rho2 Rho2 subfamily. 99.3 1.7E-11 3.7E-16 98.2 10.3 108 94-217 3-119 (187)
273 KOG0090 Signal recognition par 99.3 1.8E-11 3.9E-16 97.5 9.9 129 92-234 38-176 (238)
274 PRK09563 rbgA GTPase YlqF; Rev 99.3 7.5E-12 1.6E-16 107.0 8.3 61 91-152 120-180 (287)
275 cd01849 YlqF_related_GTPase Yl 99.3 6.6E-12 1.4E-16 97.7 7.1 58 90-148 98-155 (155)
276 cd01855 YqeH YqeH. YqeH is an 99.3 5.3E-12 1.1E-16 101.5 6.6 57 92-148 127-190 (190)
277 COG0480 FusA Translation elong 99.3 3.3E-11 7.1E-16 113.2 12.6 137 90-240 8-164 (697)
278 KOG0079 GTP-binding protein H- 99.3 1.9E-11 4.2E-16 91.8 8.7 110 93-218 9-127 (198)
279 cd01857 HSR1_MMR1 HSR1/MMR1. 99.3 8.9E-12 1.9E-16 95.4 6.7 55 94-149 85-139 (141)
280 KOG0076 GTP-binding ADP-ribosy 99.3 3.3E-11 7.3E-16 92.9 9.1 139 91-243 16-168 (197)
281 KOG0074 GTP-binding ADP-ribosy 99.3 3.5E-11 7.6E-16 89.8 8.5 118 91-222 16-138 (185)
282 TIGR03596 GTPase_YlqF ribosome 99.3 1.4E-11 3E-16 104.8 7.3 60 91-151 117-176 (276)
283 COG3276 SelB Selenocysteine-sp 99.3 1.6E-10 3.4E-15 101.3 13.9 136 94-242 2-142 (447)
284 KOG0080 GTPase Rab18, small G 99.2 3.3E-11 7.2E-16 91.8 8.3 109 92-217 11-131 (209)
285 COG0050 TufB GTPases - transla 99.2 1.2E-10 2.7E-15 97.0 12.4 136 90-238 10-164 (394)
286 KOG0093 GTPase Rab3, small G p 99.2 1.8E-10 3.9E-15 86.5 11.9 114 92-219 21-142 (193)
287 KOG0070 GTP-binding ADP-ribosy 99.2 1.5E-11 3.3E-16 95.9 6.2 119 90-223 15-138 (181)
288 COG2895 CysN GTPases - Sulfate 99.2 1.7E-10 3.6E-15 98.4 12.7 140 91-243 5-184 (431)
289 KOG1532 GTPase XAB1, interacts 99.2 6.6E-11 1.4E-15 97.8 9.9 84 139-230 117-208 (366)
290 KOG1424 Predicted GTP-binding 99.2 9.9E-12 2.1E-16 110.2 5.1 59 92-151 314-372 (562)
291 KOG0075 GTP-binding ADP-ribosy 99.2 7E-11 1.5E-15 88.7 8.4 111 92-219 20-138 (186)
292 KOG0462 Elongation factor-type 99.2 1.6E-10 3.4E-15 103.4 11.9 135 88-236 56-209 (650)
293 KOG0086 GTPase Rab4, small G p 99.2 2.1E-10 4.6E-15 86.7 10.8 115 92-221 9-132 (214)
294 PRK13768 GTPase; Provisional 99.2 9.6E-11 2.1E-15 98.4 10.1 84 138-226 97-185 (253)
295 COG1217 TypA Predicted membran 99.2 3.4E-10 7.5E-15 99.6 13.0 115 91-218 4-135 (603)
296 KOG0071 GTP-binding ADP-ribosy 99.2 1.1E-10 2.5E-15 86.9 8.5 136 92-242 17-158 (180)
297 KOG1144 Translation initiation 99.2 2.6E-10 5.7E-15 104.9 12.4 112 90-216 473-605 (1064)
298 KOG1486 GTP-binding protein DR 99.2 4.7E-11 1E-15 97.5 6.7 90 90-187 60-152 (364)
299 cd01856 YlqF YlqF. Proteins o 99.2 8.3E-11 1.8E-15 93.0 7.6 58 90-148 113-170 (171)
300 KOG0461 Selenocysteine-specifi 99.2 6.4E-10 1.4E-14 94.7 12.5 129 91-232 6-151 (522)
301 PRK12289 GTPase RsgA; Reviewed 99.1 1.1E-10 2.4E-15 102.1 7.9 57 94-151 174-237 (352)
302 PRK13796 GTPase YqeH; Provisio 99.1 6.8E-11 1.5E-15 104.3 6.6 59 92-150 160-222 (365)
303 KOG2485 Conserved ATP/GTP bind 99.1 2.7E-10 5.9E-15 95.8 9.6 131 17-151 58-209 (335)
304 COG4917 EutP Ethanolamine util 99.1 2.1E-10 4.5E-15 84.0 7.7 115 93-229 2-116 (148)
305 PRK12288 GTPase RsgA; Reviewed 99.1 1.4E-10 3.1E-15 101.3 8.0 70 94-164 207-287 (347)
306 PRK14845 translation initiatio 99.1 8.6E-10 1.9E-14 107.5 13.4 99 104-217 473-592 (1049)
307 TIGR00157 ribosome small subun 99.1 1.8E-10 3.9E-15 96.3 7.4 69 93-163 121-200 (245)
308 KOG0395 Ras-related GTPase [Ge 99.1 4.3E-10 9.4E-15 90.8 9.0 111 92-218 3-123 (196)
309 PF03193 DUF258: Protein of un 99.1 8.3E-11 1.8E-15 91.4 4.1 59 93-151 36-100 (161)
310 cd01859 MJ1464 MJ1464. This f 99.1 3.4E-10 7.4E-15 88.0 7.6 57 91-148 100-156 (156)
311 KOG0458 Elongation factor 1 al 99.1 2.1E-09 4.6E-14 96.9 13.2 130 90-232 175-346 (603)
312 TIGR00092 GTP-binding protein 99.1 3.2E-10 6.9E-15 99.1 6.8 86 93-185 3-108 (368)
313 COG5257 GCD11 Translation init 99.0 1.9E-09 4.2E-14 91.0 10.9 139 91-243 9-183 (415)
314 PRK09435 membrane ATPase/prote 99.0 1.5E-09 3.2E-14 94.1 9.9 78 137-234 148-225 (332)
315 KOG0468 U5 snRNP-specific prot 99.0 2.2E-09 4.8E-14 97.9 10.9 112 91-216 127-262 (971)
316 KOG0091 GTPase Rab39, small G 99.0 2.2E-09 4.7E-14 82.2 8.2 111 93-220 9-133 (213)
317 COG5192 BMS1 GTP-binding prote 99.0 4.9E-09 1.1E-13 94.3 10.9 113 91-221 68-181 (1077)
318 PRK00098 GTPase RsgA; Reviewed 99.0 1.9E-09 4.1E-14 92.7 8.1 58 92-150 164-228 (298)
319 cd01851 GBP Guanylate-binding 99.0 9.2E-09 2E-13 84.9 11.7 89 91-185 6-102 (224)
320 KOG0460 Mitochondrial translat 99.0 1.3E-08 2.8E-13 86.6 12.6 136 89-237 51-205 (449)
321 KOG0077 Vesicle coat complex C 99.0 5.5E-09 1.2E-13 80.2 9.3 112 92-219 20-137 (193)
322 KOG3859 Septins (P-loop GTPase 99.0 3.6E-09 7.8E-14 87.7 8.8 148 92-240 42-213 (406)
323 COG1162 Predicted GTPases [Gen 98.9 2.3E-09 5E-14 90.6 7.5 72 93-164 165-246 (301)
324 KOG4252 GTP-binding protein [S 98.9 7.9E-10 1.7E-14 85.8 4.1 115 92-219 20-140 (246)
325 KOG0097 GTPase Rab14, small G 98.9 1.3E-08 2.8E-13 76.1 9.9 113 92-220 11-133 (215)
326 PF03029 ATP_bind_1: Conserved 98.9 7.6E-09 1.6E-13 86.1 9.8 73 139-218 92-171 (238)
327 KOG2484 GTPase [General functi 98.9 6.9E-10 1.5E-14 96.0 3.4 60 90-150 250-309 (435)
328 KOG3883 Ras family small GTPas 98.9 1.5E-08 3.3E-13 76.8 10.1 120 91-223 8-138 (198)
329 TIGR03348 VI_IcmF type VI secr 98.9 1.7E-08 3.6E-13 101.1 12.7 126 90-217 109-257 (1169)
330 KOG0088 GTPase Rab21, small G 98.9 3.6E-09 7.8E-14 80.6 5.4 116 92-220 13-135 (218)
331 cd01854 YjeQ_engC YjeQ/EngC. 98.8 1.1E-08 2.5E-13 87.4 8.5 57 93-150 162-225 (287)
332 KOG1707 Predicted Ras related/ 98.8 2.1E-08 4.5E-13 90.6 10.3 115 91-218 8-130 (625)
333 KOG0448 Mitofusin 1 GTPase, in 98.8 3.4E-08 7.4E-13 90.7 11.7 117 91-219 108-277 (749)
334 COG0481 LepA Membrane GTPase L 98.8 1.8E-08 3.9E-13 89.2 9.3 130 91-234 8-158 (603)
335 COG5258 GTPBP1 GTPase [General 98.8 4.2E-08 9.2E-13 84.8 10.3 132 90-235 115-287 (527)
336 KOG2423 Nucleolar GTPase [Gene 98.8 1.6E-09 3.4E-14 93.8 1.6 62 90-152 305-366 (572)
337 TIGR00073 hypB hydrogenase acc 98.8 4.7E-08 1E-12 79.6 10.2 29 87-115 17-45 (207)
338 KOG0081 GTPase Rab27, small G 98.8 1.9E-08 4E-13 76.7 6.9 128 93-241 10-160 (219)
339 TIGR00750 lao LAO/AO transport 98.8 1.9E-07 4.1E-12 80.4 13.8 24 91-114 33-56 (300)
340 KOG3886 GTP-binding protein [S 98.8 5.7E-08 1.2E-12 78.7 9.1 119 93-225 5-138 (295)
341 TIGR01425 SRP54_euk signal rec 98.7 3.6E-07 7.7E-12 81.7 14.8 118 92-218 100-254 (429)
342 KOG1143 Predicted translation 98.7 5.1E-08 1.1E-12 84.1 8.2 137 92-241 167-341 (591)
343 COG3523 IcmF Type VI protein s 98.7 1.3E-07 2.9E-12 92.9 11.3 127 90-218 123-271 (1188)
344 PF03308 ArgK: ArgK protein; 98.7 5.3E-09 1.2E-13 86.6 1.3 118 91-233 28-194 (266)
345 KOG0467 Translation elongation 98.6 4.2E-07 9.2E-12 84.4 12.1 112 90-215 7-136 (887)
346 KOG0447 Dynamin-like GTP bindi 98.6 6.9E-07 1.5E-11 80.5 11.2 126 89-218 305-494 (980)
347 cd03112 CobW_like The function 98.6 1.2E-07 2.5E-12 74.1 5.5 114 93-215 1-158 (158)
348 COG1703 ArgK Putative periplas 98.5 2.1E-07 4.5E-12 78.4 6.4 24 91-114 50-73 (323)
349 KOG0072 GTP-binding ADP-ribosy 98.5 6.4E-07 1.4E-11 67.4 7.8 120 91-225 17-141 (182)
350 KOG0393 Ras-related small GTPa 98.5 2.1E-07 4.6E-12 74.4 5.3 111 92-218 4-124 (198)
351 PRK10416 signal recognition pa 98.5 5.1E-06 1.1E-10 72.0 14.0 124 91-218 113-274 (318)
352 COG0523 Putative GTPases (G3E 98.5 1.9E-06 4.1E-11 74.6 10.9 124 93-223 2-165 (323)
353 PF02492 cobW: CobW/HypB/UreG, 98.4 1.2E-07 2.6E-12 75.5 3.0 117 93-220 1-158 (178)
354 KOG0464 Elongation factor G [T 98.4 1.2E-07 2.5E-12 82.8 3.0 135 92-240 37-190 (753)
355 TIGR00064 ftsY signal recognit 98.4 8.7E-06 1.9E-10 69.1 14.1 78 137-218 154-232 (272)
356 PRK14722 flhF flagellar biosyn 98.4 2.2E-06 4.9E-11 75.5 10.4 25 91-115 136-160 (374)
357 PF00448 SRP54: SRP54-type pro 98.4 2.8E-06 6.1E-11 68.6 10.2 115 94-218 3-155 (196)
358 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 1.1E-06 2.4E-11 67.1 7.5 66 173-242 10-77 (141)
359 KOG0083 GTPase Rab26/Rab37, sm 98.4 1.8E-07 4E-12 69.4 2.8 106 97-218 2-118 (192)
360 KOG1487 GTP-binding protein DR 98.4 3.1E-07 6.8E-12 75.7 4.3 88 92-187 59-149 (358)
361 KOG0463 GTP-binding protein GP 98.4 4.1E-07 8.8E-12 78.7 4.9 140 92-242 133-312 (641)
362 PTZ00099 rab6; Provisional 98.4 8.6E-07 1.9E-11 70.4 6.4 68 137-217 28-99 (176)
363 PRK10463 hydrogenase nickel in 98.3 1.1E-06 2.3E-11 74.7 6.6 28 88-115 100-127 (290)
364 TIGR02475 CobW cobalamin biosy 98.3 9.3E-06 2E-10 71.1 12.6 135 91-231 3-201 (341)
365 PRK14974 cell division protein 98.3 5.4E-06 1.2E-10 72.2 10.4 73 137-218 222-294 (336)
366 cd01859 MJ1464 MJ1464. This f 98.3 4.6E-06 1E-10 64.6 8.4 57 161-220 2-58 (156)
367 KOG0465 Mitochondrial elongati 98.3 1.1E-06 2.4E-11 80.0 5.4 138 91-242 38-195 (721)
368 cd01858 NGP_1 NGP-1. Autoanti 98.3 1.8E-06 3.9E-11 67.1 5.8 56 173-228 7-64 (157)
369 PRK11889 flhF flagellar biosyn 98.3 1E-05 2.2E-10 71.5 10.8 117 92-218 241-392 (436)
370 KOG0466 Translation initiation 98.3 2.1E-06 4.6E-11 72.4 6.2 140 91-243 37-222 (466)
371 PRK14721 flhF flagellar biosyn 98.2 1E-05 2.2E-10 72.4 10.6 25 91-115 190-214 (420)
372 KOG2743 Cobalamin synthesis pr 98.2 2.2E-05 4.8E-10 66.2 11.8 136 89-229 54-237 (391)
373 PRK12727 flagellar biosynthesi 98.2 1.2E-05 2.6E-10 73.4 10.9 117 91-217 349-498 (559)
374 cd03114 ArgK-like The function 98.2 1.1E-05 2.3E-10 62.3 9.0 21 95-115 2-22 (148)
375 PRK11537 putative GTP-binding 98.2 2.1E-05 4.5E-10 68.3 11.6 122 91-218 3-165 (318)
376 PRK00771 signal recognition pa 98.2 2.2E-05 4.7E-10 70.8 12.1 71 138-217 176-246 (437)
377 PRK01889 GTPase RsgA; Reviewed 98.2 1.3E-06 2.9E-11 76.9 3.7 59 92-151 195-260 (356)
378 TIGR00101 ureG urease accessor 98.1 2.1E-05 4.5E-10 63.7 9.6 23 93-115 2-24 (199)
379 PRK12724 flagellar biosynthesi 98.1 2.3E-05 5.1E-10 69.8 10.0 24 92-115 223-246 (432)
380 cd04178 Nucleostemin_like Nucl 98.0 1.3E-05 2.9E-10 63.3 6.7 56 176-231 1-58 (172)
381 COG1419 FlhF Flagellar GTP-bin 98.0 3E-05 6.4E-10 68.4 9.3 117 92-218 203-353 (407)
382 PRK10867 signal recognition pa 98.0 8.6E-05 1.9E-09 66.9 12.3 72 137-217 183-254 (433)
383 cd03115 SRP The signal recogni 98.0 7.5E-05 1.6E-09 58.8 10.6 72 137-218 82-154 (173)
384 KOG1534 Putative transcription 98.0 2.7E-05 5.8E-10 62.6 7.6 76 138-218 98-179 (273)
385 PRK05703 flhF flagellar biosyn 98.0 1.7E-05 3.6E-10 71.5 7.2 118 92-218 221-372 (424)
386 PRK14723 flhF flagellar biosyn 98.0 4.7E-05 1E-09 72.6 10.4 117 92-217 185-337 (767)
387 COG0552 FtsY Signal recognitio 98.0 2.9E-05 6.3E-10 66.6 8.1 123 91-217 138-298 (340)
388 cd01849 YlqF_related_GTPase Yl 98.0 2.2E-05 4.7E-10 60.8 6.8 48 176-223 1-49 (155)
389 cd00066 G-alpha G protein alph 98.0 2.7E-05 5.9E-10 67.6 7.9 68 137-217 160-242 (317)
390 TIGR00959 ffh signal recogniti 98.0 0.00015 3.2E-09 65.3 12.7 72 137-217 182-253 (428)
391 PRK12726 flagellar biosynthesi 98.0 4E-05 8.8E-10 67.5 8.5 24 91-114 205-228 (407)
392 PRK12723 flagellar biosynthesi 97.9 0.00016 3.4E-09 64.3 12.1 23 92-114 174-196 (388)
393 TIGR03596 GTPase_YlqF ribosome 97.9 4.2E-05 9.2E-10 65.1 7.8 50 171-222 18-67 (276)
394 cd02038 FleN-like FleN is a me 97.9 0.00015 3.3E-09 55.2 9.8 117 97-232 5-124 (139)
395 KOG0780 Signal recognition par 97.9 0.00023 4.9E-09 62.2 11.2 48 67-114 76-123 (483)
396 KOG0096 GTPase Ran/TC4/GSP1 (n 97.9 3.7E-05 8.1E-10 60.6 5.9 116 91-219 9-130 (216)
397 KOG1673 Ras GTPases [General f 97.9 0.00013 2.8E-09 55.8 8.7 111 92-216 20-137 (205)
398 PRK06995 flhF flagellar biosyn 97.8 0.00015 3.3E-09 66.1 10.4 24 92-115 256-279 (484)
399 PRK06731 flhF flagellar biosyn 97.8 0.00012 2.5E-09 62.0 9.1 119 91-218 74-226 (270)
400 cd01856 YlqF YlqF. Proteins o 97.8 7.5E-05 1.6E-09 58.8 7.4 50 169-220 14-63 (171)
401 smart00275 G_alpha G protein a 97.8 8.4E-05 1.8E-09 65.2 8.3 68 137-217 183-265 (342)
402 KOG2484 GTPase [General functi 97.8 7.1E-05 1.5E-09 65.4 7.6 70 164-233 136-207 (435)
403 COG1618 Predicted nucleotide k 97.8 0.00038 8.2E-09 53.9 10.2 120 91-215 4-142 (179)
404 COG3640 CooC CO dehydrogenase 97.7 0.0001 2.2E-09 60.3 6.8 44 173-216 154-198 (255)
405 KOG0446 Vacuolar sorting prote 97.7 1.8E-05 3.8E-10 74.7 2.6 77 139-218 133-214 (657)
406 COG0541 Ffh Signal recognition 97.7 0.00046 1E-08 61.3 11.0 24 91-114 99-122 (451)
407 PF09547 Spore_IV_A: Stage IV 97.7 0.00014 3.1E-09 64.4 7.4 148 90-242 15-215 (492)
408 KOG3905 Dynein light intermedi 97.7 0.0032 6.9E-08 54.1 14.9 27 90-116 50-76 (473)
409 PF00004 AAA: ATPase family as 97.6 0.0007 1.5E-08 50.2 9.6 21 95-115 1-21 (132)
410 KOG1707 Predicted Ras related/ 97.6 0.00011 2.4E-09 67.1 5.9 112 90-219 423-542 (625)
411 cd01855 YqeH YqeH. YqeH is an 97.6 0.00013 2.8E-09 58.4 5.6 43 174-218 34-76 (190)
412 KOG0469 Elongation factor 2 [T 97.6 0.00024 5.1E-09 64.0 7.5 111 91-216 18-163 (842)
413 PRK09563 rbgA GTPase YlqF; Rev 97.6 0.00037 8.1E-09 59.6 8.2 46 172-219 22-67 (287)
414 KOG1533 Predicted GTPase [Gene 97.5 0.00022 4.7E-09 58.4 5.5 77 138-219 97-179 (290)
415 COG1116 TauB ABC-type nitrate/ 97.5 7.1E-05 1.5E-09 61.8 2.7 25 92-116 29-53 (248)
416 cd00071 GMPK Guanosine monopho 97.5 9.7E-05 2.1E-09 56.1 3.2 53 95-147 2-55 (137)
417 PRK12289 GTPase RsgA; Reviewed 97.5 0.00046 1E-08 60.7 7.7 66 173-242 88-155 (352)
418 PRK14737 gmk guanylate kinase; 97.4 0.00014 3E-09 58.3 3.2 39 92-131 4-42 (186)
419 PRK13695 putative NTPase; Prov 97.4 0.00062 1.4E-08 53.7 6.9 22 94-115 2-23 (174)
420 smart00010 small_GTPase Small 97.3 0.00068 1.5E-08 49.6 6.3 22 94-115 2-23 (124)
421 cd03111 CpaE_like This protein 97.3 0.0021 4.6E-08 46.5 8.6 97 98-212 6-106 (106)
422 COG3840 ThiQ ABC-type thiamine 97.3 0.00019 4.2E-09 56.7 3.2 25 91-115 24-48 (231)
423 PF13555 AAA_29: P-loop contai 97.3 0.00027 5.8E-09 45.9 3.3 22 93-114 24-45 (62)
424 TIGR03263 guanyl_kin guanylate 97.3 0.00014 3E-09 57.6 2.3 23 94-116 3-25 (180)
425 KOG0082 G-protein alpha subuni 97.3 0.00085 1.8E-08 58.5 6.9 69 137-218 194-277 (354)
426 cd02036 MinD Bacterial cell di 97.3 0.0021 4.7E-08 50.4 8.8 64 139-217 64-128 (179)
427 KOG4423 GTP-binding protein-li 97.3 1.7E-05 3.6E-10 62.4 -3.3 131 91-235 24-166 (229)
428 cd01983 Fer4_NifH The Fer4_Nif 97.2 0.0024 5.3E-08 44.3 8.1 70 95-187 2-71 (99)
429 KOG0459 Polypeptide release fa 97.2 0.00052 1.1E-08 60.3 5.3 134 87-233 74-251 (501)
430 cd03110 Fer4_NifH_child This p 97.2 0.0047 1E-07 48.7 10.6 82 137-238 92-173 (179)
431 PRK00098 GTPase RsgA; Reviewed 97.2 0.0011 2.4E-08 57.1 7.3 67 173-242 79-147 (298)
432 PF00005 ABC_tran: ABC transpo 97.2 0.00026 5.7E-09 53.3 3.0 26 91-116 10-35 (137)
433 COG0194 Gmk Guanylate kinase [ 97.2 0.00015 3.1E-09 57.5 1.3 38 92-131 4-41 (191)
434 TIGR00157 ribosome small subun 97.2 0.0019 4.1E-08 54.0 8.1 47 174-220 36-84 (245)
435 COG1136 SalX ABC-type antimicr 97.2 0.00033 7.1E-09 57.5 3.4 26 91-116 30-55 (226)
436 PF13671 AAA_33: AAA domain; P 97.2 0.00044 9.6E-09 52.3 3.9 22 94-115 1-22 (143)
437 KOG3887 Predicted small GTPase 97.2 0.0017 3.7E-08 53.5 7.4 117 92-220 27-152 (347)
438 PF05621 TniB: Bacterial TniB 97.2 0.0044 9.6E-08 52.9 10.2 27 90-116 59-85 (302)
439 cd00009 AAA The AAA+ (ATPases 97.2 0.0037 7.9E-08 46.5 8.8 24 92-115 19-42 (151)
440 PF06858 NOG1: Nucleolar GTP-b 97.1 0.0015 3.2E-08 41.5 5.2 40 175-214 14-58 (58)
441 PF13207 AAA_17: AAA domain; P 97.1 0.00037 8E-09 51.3 2.9 22 94-115 1-22 (121)
442 PRK14738 gmk guanylate kinase; 97.1 0.00047 1E-08 56.1 3.7 25 91-115 12-36 (206)
443 cd03222 ABC_RNaseL_inhibitor T 97.1 0.00049 1.1E-08 54.7 3.3 25 91-115 24-48 (177)
444 cd01854 YjeQ_engC YjeQ/EngC. 97.0 0.0022 4.9E-08 54.9 7.1 47 173-219 77-125 (287)
445 KOG4181 Uncharacterized conser 97.0 0.005 1.1E-07 53.3 9.0 27 90-116 186-212 (491)
446 TIGR00960 3a0501s02 Type II (G 97.0 0.00058 1.3E-08 55.7 3.4 26 91-116 28-53 (216)
447 COG3839 MalK ABC-type sugar tr 97.0 0.00045 9.7E-09 60.1 2.7 25 92-116 29-53 (338)
448 TIGR00235 udk uridine kinase. 97.0 0.00052 1.1E-08 55.8 3.0 26 90-115 4-29 (207)
449 cd03264 ABC_drug_resistance_li 97.0 0.00055 1.2E-08 55.6 3.0 23 92-115 26-48 (211)
450 cd03225 ABC_cobalt_CbiO_domain 97.0 0.00062 1.4E-08 55.3 3.3 26 91-116 26-51 (211)
451 cd03238 ABC_UvrA The excision 97.0 0.00069 1.5E-08 53.8 3.4 25 91-115 20-44 (176)
452 PRK00300 gmk guanylate kinase; 97.0 0.00074 1.6E-08 54.6 3.6 26 91-116 4-29 (205)
453 PF03205 MobB: Molybdopterin g 97.0 0.0006 1.3E-08 52.0 2.9 23 93-115 1-23 (140)
454 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.0 0.00067 1.5E-08 55.4 3.4 26 91-116 29-54 (218)
455 cd01130 VirB11-like_ATPase Typ 97.0 0.00064 1.4E-08 54.3 3.2 24 92-115 25-48 (186)
456 cd03261 ABC_Org_Solvent_Resist 97.0 0.00069 1.5E-08 56.1 3.4 26 91-116 25-50 (235)
457 KOG0781 Signal recognition par 97.0 0.0025 5.5E-08 57.2 7.0 75 137-218 466-545 (587)
458 COG1126 GlnQ ABC-type polar am 97.0 0.00073 1.6E-08 54.8 3.3 26 91-116 27-52 (240)
459 TIGR03597 GTPase_YqeH ribosome 96.9 0.0034 7.4E-08 55.5 7.7 71 161-236 53-124 (360)
460 cd03226 ABC_cobalt_CbiO_domain 96.9 0.00075 1.6E-08 54.6 3.3 25 91-115 25-49 (205)
461 COG1120 FepC ABC-type cobalami 96.9 0.00076 1.6E-08 56.5 3.3 25 91-115 27-51 (258)
462 TIGR01166 cbiO cobalt transpor 96.9 0.00082 1.8E-08 53.7 3.4 26 91-116 17-42 (190)
463 KOG2749 mRNA cleavage and poly 96.9 0.0094 2E-07 51.8 9.8 24 91-114 102-125 (415)
464 TIGR02673 FtsE cell division A 96.9 0.00083 1.8E-08 54.7 3.3 26 91-116 27-52 (214)
465 cd03260 ABC_PstB_phosphate_tra 96.9 0.00084 1.8E-08 55.2 3.4 25 91-115 25-49 (227)
466 TIGR02211 LolD_lipo_ex lipopro 96.9 0.00085 1.8E-08 54.9 3.3 26 91-116 30-55 (221)
467 cd03216 ABC_Carb_Monos_I This 96.9 0.00089 1.9E-08 52.3 3.3 26 91-116 25-50 (163)
468 cd03265 ABC_DrrA DrrA is the A 96.9 0.00088 1.9E-08 54.9 3.4 25 91-115 25-49 (220)
469 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.00095 2.1E-08 51.1 3.3 26 91-116 25-50 (144)
470 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0042 9.1E-08 51.9 7.5 21 95-115 2-22 (249)
471 cd03292 ABC_FtsE_transporter F 96.9 0.00091 2E-08 54.4 3.3 26 91-116 26-51 (214)
472 PRK13541 cytochrome c biogenes 96.9 0.00093 2E-08 53.7 3.3 26 91-116 25-50 (195)
473 cd03262 ABC_HisP_GlnQ_permease 96.9 0.00093 2E-08 54.3 3.4 26 91-116 25-50 (213)
474 TIGR03608 L_ocin_972_ABC putat 96.9 0.00089 1.9E-08 54.1 3.2 26 91-116 23-48 (206)
475 cd03259 ABC_Carb_Solutes_like 96.9 0.00094 2E-08 54.4 3.4 25 91-115 25-49 (213)
476 cd03257 ABC_NikE_OppD_transpor 96.9 0.00094 2E-08 54.9 3.3 26 91-116 30-55 (228)
477 PRK12288 GTPase RsgA; Reviewed 96.9 0.0055 1.2E-07 53.9 8.3 69 173-242 119-188 (347)
478 cd03269 ABC_putative_ATPase Th 96.9 0.00098 2.1E-08 54.1 3.3 26 91-116 25-50 (210)
479 PRK09270 nucleoside triphospha 96.8 0.0021 4.6E-08 53.1 5.3 25 91-115 32-56 (229)
480 TIGR02315 ABC_phnC phosphonate 96.8 0.00098 2.1E-08 55.4 3.4 26 91-116 27-52 (243)
481 cd03293 ABC_NrtD_SsuB_transpor 96.8 0.00092 2E-08 54.7 3.2 26 91-116 29-54 (220)
482 PRK10751 molybdopterin-guanine 96.8 0.0009 2E-08 52.8 2.9 25 91-115 5-29 (173)
483 cd03224 ABC_TM1139_LivF_branch 96.8 0.00092 2E-08 54.7 3.1 26 91-116 25-50 (222)
484 cd02042 ParA ParA and ParB of 96.8 0.006 1.3E-07 43.6 7.1 71 95-186 2-73 (104)
485 cd03263 ABC_subfamily_A The AB 96.8 0.001 2.2E-08 54.4 3.3 26 91-116 27-52 (220)
486 PRK01889 GTPase RsgA; Reviewed 96.8 0.0043 9.4E-08 54.8 7.5 46 173-218 111-157 (356)
487 TIGR02322 phosphon_PhnN phosph 96.8 0.00094 2E-08 52.8 3.0 23 93-115 2-24 (179)
488 cd03235 ABC_Metallic_Cations A 96.8 0.001 2.2E-08 54.2 3.2 26 91-116 24-49 (213)
489 PRK13540 cytochrome c biogenes 96.8 0.0011 2.4E-08 53.5 3.4 26 91-116 26-51 (200)
490 PRK15177 Vi polysaccharide exp 96.8 0.0011 2.3E-08 54.2 3.3 25 91-115 12-36 (213)
491 COG4525 TauB ABC-type taurine 96.8 0.00086 1.9E-08 53.7 2.6 25 91-115 30-54 (259)
492 PF02263 GBP: Guanylate-bindin 96.8 0.0016 3.4E-08 55.0 4.4 60 91-150 20-86 (260)
493 cd03215 ABC_Carb_Monos_II This 96.8 0.0011 2.4E-08 52.7 3.3 26 91-116 25-50 (182)
494 PRK07261 topology modulation p 96.8 0.00098 2.1E-08 52.6 2.9 22 94-115 2-23 (171)
495 cd03229 ABC_Class3 This class 96.8 0.0012 2.5E-08 52.4 3.4 26 91-116 25-50 (178)
496 cd02019 NK Nucleoside/nucleoti 96.8 0.0011 2.3E-08 44.1 2.7 21 95-115 2-22 (69)
497 cd03258 ABC_MetN_methionine_tr 96.8 0.0011 2.4E-08 54.7 3.4 26 91-116 30-55 (233)
498 cd03301 ABC_MalK_N The N-termi 96.8 0.0011 2.5E-08 53.8 3.4 26 91-116 25-50 (213)
499 PRK11248 tauB taurine transpor 96.8 0.0011 2.4E-08 55.7 3.4 26 91-116 26-51 (255)
500 TIGR01189 ccmA heme ABC export 96.8 0.0011 2.5E-08 53.3 3.3 26 91-116 25-50 (198)
No 1
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.97 E-value=1.7e-30 Score=227.29 Aligned_cols=194 Identities=24% Similarity=0.254 Sum_probs=152.9
Q ss_pred hccccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhhHHHhhcccCCCCCCC
Q 026112 12 QFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPD 91 (243)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (243)
.-.+++.+.+.+..+...| |..+++.++ .+|+.+|||++++|...........+.+....-.++..+.+...++ .
T Consensus 142 ~r~A~~~l~G~ls~~i~~l--r~~li~~~a-~vEa~IDfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~ilr--~ 216 (454)
T COG0486 142 ARIALRQLQGALSQLINEL--REALLELLA-QVEANIDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKILR--E 216 (454)
T ss_pred HHHHHHHcCCcHHHHHHHH--HHHHHHHHH-HheEeCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--c
Confidence 3347777888889999999 889999998 8999999999987777665554444444444455666666655453 7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCcc---chHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYA---KEEVKDAWEELV 165 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~---~~~~~~~~~~~~ 165 (243)
+.+++++|+||+|||||+|+|++. +.++|+++||||||+..... |.++.++||+|++++.+ +.++++.|.
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~-d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~--- 292 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGR-DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKK--- 292 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcC-CceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHH---
Confidence 889999999999999999999999 67999999999999976653 88999999999998642 233344443
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~ 220 (243)
..+.+|+|++|+|++.+++..+..++. +...+.|+++|+||+|+..+..
T Consensus 293 -----~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 293 -----AIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIE 341 (454)
T ss_pred -----HHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccc
Confidence 334499999999999877788877777 5556799999999999987543
No 2
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.97 E-value=3.3e-29 Score=197.91 Aligned_cols=161 Identities=46% Similarity=0.706 Sum_probs=145.6
Q ss_pred HHHhhcccCCCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchH
Q 026112 77 FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEE 156 (243)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~ 156 (243)
+..++....+.|.+..|.|+|+|++|+|||||||+|++....+++|..||.|+.++++..+..+.++|.|||+.+....+
T Consensus 9 f~~sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~ 88 (200)
T COG0218 9 FITSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKE 88 (200)
T ss_pred EEEecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHH
Confidence 34445555678888999999999999999999999999756799999999999999999988899999999999888888
Q ss_pred HHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCC
Q 026112 157 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN 236 (243)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~ 236 (243)
..+.|..++..|+..+....++++++|+.+++...|.++++++...++|+++|+||+|++...+..+....+++.+....
T Consensus 89 ~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~ 168 (200)
T COG0218 89 VKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP 168 (200)
T ss_pred HHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC
Confidence 89999999999999998899999999999999999999999999999999999999999999888888888887766544
Q ss_pred C
Q 026112 237 S 237 (243)
Q Consensus 237 ~ 237 (243)
.
T Consensus 169 ~ 169 (200)
T COG0218 169 P 169 (200)
T ss_pred C
Confidence 3
No 3
>COG2262 HflX GTPases [General function prediction only]
Probab=99.93 E-value=1.2e-25 Score=193.80 Aligned_cols=202 Identities=19% Similarity=0.207 Sum_probs=144.7
Q ss_pred chhhhhccccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhhhh--hhhhHHHhhc--
Q 026112 7 MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFR--NKLEFFAAAK-- 82 (243)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-- 82 (243)
+-+++++.++|++.|+++|..+|+.+.|..+....+++ ...+|+|. ..+.+++.+..++.+ ..++.....+
T Consensus 108 ~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l~~~Gggi--G~rGpGE~---~lE~drR~ir~rI~~i~~eLe~v~~~R~~ 182 (411)
T COG2262 108 QRARSREGKLQVELAQLRYELPRLVGSGSHLSRLGGGI--GFRGPGET---QLETDRRRIRRRIAKLKRELENVEKAREP 182 (411)
T ss_pred HHhccchhhhhhhHHhhhhhhhHhHhhhhhcccccCCC--CCCCCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999444333 46677765 667778888888743 3343333322
Q ss_pred ccCCCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE----eCCcEEEEeCCCCCCCccchHHH
Q 026112 83 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVK 158 (243)
Q Consensus 83 ~~~~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~ 158 (243)
.+..+...+.|.|+++|++|||||||+|+|++.. ..+.+..++|-|+.... .|..+.+.||-||.......
T Consensus 183 ~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~--~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~--- 257 (411)
T COG2262 183 RRKKRSRSGIPLVALVGYTNAGKSTLFNALTGAD--VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHP--- 257 (411)
T ss_pred HhhhhcccCCCeEEEEeeccccHHHHHHHHhccC--eeccccccccccCceeEEEeCCCceEEEecCccCcccCChH---
Confidence 3445556789999999999999999999999884 66677777776654332 26789999999996532222
Q ss_pred HHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-H---HHHHHHHhcCCcEEEEeecCCCCChHH
Q 026112 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-H---ELISLMERSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~---~~~~~l~~~~~p~i~v~nK~D~~~~~~ 220 (243)
+-..++..+.....+|++++|+|++++..... . .++..+....+|+++|+||+|++.+..
T Consensus 258 --LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~ 321 (411)
T COG2262 258 --LVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE 321 (411)
T ss_pred --HHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh
Confidence 22334445555567999999999988633322 2 333333344689999999999987654
No 4
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.93 E-value=1.8e-24 Score=172.47 Aligned_cols=158 Identities=42% Similarity=0.674 Sum_probs=127.6
Q ss_pred CCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 86 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 86 ~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++...++|+++|.+|+|||||+|+|++......+++.+|+|.++..+..+..+.+|||||+............|..+.
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHHHH
Confidence 45556788999999999999999999999743566788999999988776666899999999876544444455666777
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCC--CccccCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN--SLVQPVV 243 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~--~~~~pi~ 243 (243)
..|+.....++++++|+|++.++...+..+++.+...+.|+++|+||+|+..+.+.......+++.+...+ ..++|++
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~S 171 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFS 171 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEE
Confidence 77777666689999999998888888888888888889999999999999988777778888888888754 2455553
No 5
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.93 E-value=3.4e-25 Score=193.56 Aligned_cols=201 Identities=19% Similarity=0.211 Sum_probs=132.2
Q ss_pred chhhhhccccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhhhh--hhhhHHHhhc--
Q 026112 7 MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFR--NKLEFFAAAK-- 82 (243)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-- 82 (243)
+-++++++++|+..++++|..+|+.+.+..+....++++ .++|+|+ ....+++.+..++.+ ..+..+...+
T Consensus 105 ~ra~t~e~klqv~la~l~~~l~r~~~~~~~l~~~~~~i~--~~g~gE~---~~~~~~~~i~~ri~~l~~~L~~~~~~~~~ 179 (351)
T TIGR03156 105 QRARTHEGKLQVELAQLKYLLPRLVGGWTHLSRQGGGIG--TRGPGET---QLETDRRLIRERIAQLKKELEKVEKQRER 179 (351)
T ss_pred HhccChHHHHHHHHHhccchhhhhhhhHHHHHhhcCCCC--CCCCChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788889999999999999999987776655544444 3566654 123445555555532 2233222222
Q ss_pred ccCCCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE----eCCcEEEEeCCCCCCCccchHHH
Q 026112 83 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVK 158 (243)
Q Consensus 83 ~~~~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~ 158 (243)
.+..+.+.+.++|+++|+||||||||+|+|++.. ..+++.+|+|.|+.... .+..+.++||||+......+ ..
T Consensus 180 ~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~--~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~-li 256 (351)
T TIGR03156 180 QRRRRKRADVPTVALVGYTNAGKSTLFNALTGAD--VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHE-LV 256 (351)
T ss_pred HHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCc--eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHH-HH
Confidence 2222333567999999999999999999999983 67788899998875432 25689999999984321122 11
Q ss_pred HHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhH-HHHHHHHh---cCCcEEEEeecCCCCChH
Q 026112 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
+.+.. .+.....+|++++|+|++++...... .+.+.+.. .+.|+++|+||+|+....
T Consensus 257 e~f~~----tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~ 317 (351)
T TIGR03156 257 AAFRA----TLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP 317 (351)
T ss_pred HHHHH----HHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH
Confidence 12222 22233459999999999876544332 23333433 368999999999998643
No 6
>PRK11058 GTPase HflX; Provisional
Probab=99.92 E-value=6.1e-25 Score=196.13 Aligned_cols=200 Identities=16% Similarity=0.209 Sum_probs=135.3
Q ss_pred chhhhhccccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhhhhh--hhhHHHhhc--
Q 026112 7 MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRN--KLEFFAAAK-- 82 (243)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-- 82 (243)
+-++++++++|++.|+++|..+||.+.|..+..+.+++. ..+|+|. ..+.+++.+..++... .++.....+
T Consensus 113 ~rA~t~e~klqvelA~l~y~~prl~~~~~~l~~~~gg~g--~~g~ge~---~~e~d~r~i~~ri~~l~~~L~~~~~~r~~ 187 (426)
T PRK11058 113 QRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIG--LRGPGET---QLETDRRLLRNRIVQILSRLERVEKQREQ 187 (426)
T ss_pred HhcCChHHHHHHHHHhhhhhhhhhhccccchhhhcCCCC--CCCCChh---HhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 456788899999999999999999999988888776554 4677765 4455566666666332 222221111
Q ss_pred ccCCCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE--e-C-CcEEEEeCCCCCCCccchHHH
Q 026112 83 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L-G-TKLCLVDLPGYGFAYAKEEVK 158 (243)
Q Consensus 83 ~~~~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~--~-~-~~~~liDTpG~~~~~~~~~~~ 158 (243)
.+..+...+.|+|+++|+||||||||+|+|++. + ..+++.+|+|.+..... . + ..+.++||||+......+ .
T Consensus 188 ~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~-~-~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~-l- 263 (426)
T PRK11058 188 GRRARIKADVPTVSLVGYTNAGKSTLFNRITEA-R-VYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHD-L- 263 (426)
T ss_pred HHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCC-c-eeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHH-H-
Confidence 111122235689999999999999999999998 3 34788899998875432 2 3 378999999984321112 1
Q ss_pred HHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhH----HHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH----ELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~----~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
+..+ ...+.....+|++++|+|++++...... .++..+...+.|+++|+||+|+...
T Consensus 264 --ve~f-~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 264 --VAAF-KATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred --HHHH-HHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCc
Confidence 2222 2233344569999999999876444432 3344444446899999999999753
No 7
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.92 E-value=3.5e-24 Score=193.09 Aligned_cols=193 Identities=25% Similarity=0.273 Sum_probs=130.3
Q ss_pred hhhccccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhh---hhhhhhHHHhhcccCC
Q 026112 10 NAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENI---FRNKLEFFAAAKVSSS 86 (243)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 86 (243)
.|...++..+.+.+......| |.+++...+ .+|+.+|||+|+.+... ++.+..++ .+....+.........
T Consensus 138 ~~~~~al~~l~G~l~~~~~~~--r~~l~~~~a-~iea~iDf~ee~~~~~~---~~~i~~~i~~l~~~l~~l~~~~~~~~~ 211 (449)
T PRK05291 138 AAARLALRQLQGALSKLINEL--REELLELLA-LVEAAIDFPEEDIEFLS---DEKILEKLEELIAELEALLASARQGEI 211 (449)
T ss_pred HHHHHHHHhcCcHHHHHHHHH--HHHHHHHHH-HheEEccCCCCCccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344447778888888888888 777888776 89999999998754333 33333333 2222222322222222
Q ss_pred CCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHH
Q 026112 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (243)
Q Consensus 87 ~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (243)
. ..+++|+++|+||+|||||+|+|++. ....+++.+|+|++..... .+..+.+|||||+.+.. +.++..
T Consensus 212 ~--~~~~kV~ivG~~nvGKSSLln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~--~~ie~~--- 283 (449)
T PRK05291 212 L--REGLKVVIAGRPNVGKSSLLNALLGE-ERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD--DEVEKI--- 283 (449)
T ss_pred h--hcCCEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc--cHHHHH---
Confidence 2 24589999999999999999999998 4567899999999875432 36789999999987532 211111
Q ss_pred HHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
.+...+.....+|++++|+|++.+.+..+..++.. ..+.|+++|+||+|+...
T Consensus 284 gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 284 GIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhcccc
Confidence 01112222344999999999987765555444433 447899999999999754
No 8
>COG1159 Era GTPase [General function prediction only]
Probab=99.92 E-value=4.5e-24 Score=177.54 Aligned_cols=143 Identities=25% Similarity=0.298 Sum_probs=112.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.-|+++|+||+|||||+|+|+|. +.+++|+.+.|||..... ..+..+.++||||+..+... . ...+.....
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~-KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~--l---~~~m~~~a~ 80 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHA--L---GELMNKAAR 80 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcC-ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchH--H---HHHHHHHHH
Confidence 46899999999999999999999 899999999999986432 23678999999999875221 1 234555666
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH-HHHHHHHHHHHHhhCCCccccCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~-~~~~~~~l~~~l~~~~~~~~pi~ 243 (243)
....++|++++|+|+.+++...+..+++.++....|+++++||+|...+.. +....+.+...... ..++|||
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f--~~ivpiS 153 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPF--KEIVPIS 153 (298)
T ss_pred HHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCc--ceEEEee
Confidence 667779999999999998999999999999987789999999999998877 44444444333222 2555654
No 9
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=6.9e-24 Score=190.34 Aligned_cols=193 Identities=20% Similarity=0.199 Sum_probs=132.7
Q ss_pred hhhccccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhhHHHhhcccCCCCC
Q 026112 10 NAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPA 89 (243)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (243)
.|.-.++..+.+.+.....+| |..+++..+ .+|+.+|||+|+.+. .+.......+.......+... ....+
T Consensus 130 ~~~~~A~~~l~G~ls~~~~~~--r~~l~~~~a-~iea~iDf~ee~~~~---~~~~~~l~~~~~~l~~ll~~~-~~~~~-- 200 (442)
T TIGR00450 130 KVKDIALNKLAGELDQKIEAI--RKSLLQLLA-QVEVNIDYEEDDDEQ---DSLNQLLLSIIAELKDILNSY-KLEKL-- 200 (442)
T ss_pred HHHHHHHHhcCcHHHHHHHHH--HHHHHHHHH-HeeEECCcCCCCccH---HHHHHHHHHHHHHHHHHHHHH-HHHHh--
Confidence 344447778888999999999 888888888 899999999976332 122111222222222333333 22222
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
..+++|+++|+||+|||||+|+|++. ..+.+++++|||++..... .+..+.+|||||+.+.. +.++... +.
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~-~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~--~~ie~~g---i~ 274 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQ-DRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA--DFVERLG---IE 274 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch--hHHHHHH---HH
Confidence 35689999999999999999999998 4577899999999975433 36789999999997532 2111111 11
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
........+|++++|+|++.+.+..+. ++..+...+.|+++|+||+|+...
T Consensus 275 ~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 275 KSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN 325 (442)
T ss_pred HHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc
Confidence 222223349999999999876655554 566666568999999999999653
No 10
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.91 E-value=1.3e-22 Score=163.36 Aligned_cols=167 Identities=43% Similarity=0.655 Sum_probs=127.5
Q ss_pred hHHHhhcccCCCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccch
Q 026112 76 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKE 155 (243)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~ 155 (243)
+...+....+..+.+..++|+++|.+|+|||||+|+|++......+++.+|+|+.+.++..+..+.+|||||+.......
T Consensus 8 ~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~ 87 (196)
T PRK00454 8 EFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSK 87 (196)
T ss_pred HHHHhhccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCc
Confidence 33334333444555678999999999999999999999973356788889999998887777889999999986543333
Q ss_pred HHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhC
Q 026112 156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN 235 (243)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~ 235 (243)
...+.|..+...++.....++++++|+|+..+....+..+.+++...+.|+++++||+|+....+.......+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~ 167 (196)
T PRK00454 88 EEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG 167 (196)
T ss_pred hHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc
Confidence 34455666777777776677899999998877666666777778778899999999999998777766666777777665
Q ss_pred CCccccC
Q 026112 236 NSLVQPV 242 (243)
Q Consensus 236 ~~~~~pi 242 (243)
...++|+
T Consensus 168 ~~~~~~~ 174 (196)
T PRK00454 168 DDEVILF 174 (196)
T ss_pred CCceEEE
Confidence 5555565
No 11
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=2.9e-24 Score=166.19 Aligned_cols=138 Identities=28% Similarity=0.284 Sum_probs=98.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|+++|.||+|||||+|+|+|.. ..++++||+|.+..... .+..+.++||||+..-...... +.....++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e----e~v~~~~l 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE----ERVARDYL 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH----HHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH----HHHHHHHH
Confidence 479999999999999999999994 78999999999986543 3678999999996442221111 22333343
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
. ....|++++|+|+++. +.+..+..++...++|+++|+||+|+..........+.+.+.++ .++.|+
T Consensus 75 ~-~~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg---~pvi~~ 141 (156)
T PF02421_consen 75 L-SEKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLG---VPVIPV 141 (156)
T ss_dssp H-HTSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT---S-EEEE
T ss_pred h-hcCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC---CCEEEE
Confidence 3 2449999999999863 66678888888999999999999998876555445566666653 455554
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=2.8e-23 Score=181.58 Aligned_cols=121 Identities=27% Similarity=0.475 Sum_probs=100.8
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
|.|+++|+||+|||||+|+|++. +.+.|+++||+|||-.... .+..+.+|||+|+.... .+.+.. .+..+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~-r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~-~~~l~~---~i~~Qa~ 78 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGR-RIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD-EDELQE---LIREQAL 78 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC-eeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC-chHHHH---HHHHHHH
Confidence 78999999999999999999999 7899999999999976543 37789999999997532 123332 2333444
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
....+||++++|+|+..++++.|..+.++|...++|+++|+||+|....
T Consensus 79 ~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~ 127 (444)
T COG1160 79 IAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA 127 (444)
T ss_pred HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh
Confidence 4455599999999999999999999999999888999999999998743
No 13
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=9.4e-22 Score=172.06 Aligned_cols=142 Identities=27% Similarity=0.276 Sum_probs=109.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE---EEeCCcEEEEeCCCCCCCccchH-HHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEE-VKDAWEELVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~---~~~~~~~~liDTpG~~~~~~~~~-~~~~~~~~~~ 166 (243)
...+|+++|.||+|||||+|+|++. ....+++.+|||+|... ...+..+.++||+|++....-.+ ++ . ..+.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilge-eR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E-~--~Sv~ 252 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGE-ERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVE-K--YSVA 252 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccC-ceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceE-E--Eeeh
Confidence 4689999999999999999999999 55899999999999743 33588999999999875321110 00 0 0111
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh--HHHHHHHHHHHHHHhhCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEESLKANN 236 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~--~~~~~~~~~l~~~l~~~~ 236 (243)
+.+.....+|++++|+|++.++..+|..+..++...+.++++|+||||+++. ....+....++..+....
T Consensus 253 rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~ 324 (444)
T COG1160 253 RTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLD 324 (444)
T ss_pred hhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhcccc
Confidence 2223333499999999999999999999999999999999999999999986 445566666666655443
No 14
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.87 E-value=3e-21 Score=163.57 Aligned_cols=125 Identities=21% Similarity=0.218 Sum_probs=92.1
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
.|+++|+||||||||+|+|++. +.+.+++.++||++.... ..+..+.++||||+.+.. .... ..+......
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~-~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~--~~l~---~~~~~~~~~ 75 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQ-KISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK--HSLN---RLMMKEARS 75 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-cEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc--chHH---HHHHHHHHH
Confidence 6899999999999999999998 667899999999985322 125679999999987531 1111 122223333
Q ss_pred cccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHH
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRA 225 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~ 225 (243)
....+|++++|+|++...... ..+++.+...+.|+++|+||+|+..+.......
T Consensus 76 ~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~ 129 (270)
T TIGR00436 76 AIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLI 129 (270)
T ss_pred HHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHH
Confidence 344599999999998754433 567777777889999999999998665544333
No 15
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.4e-21 Score=171.28 Aligned_cols=177 Identities=21% Similarity=0.209 Sum_probs=116.7
Q ss_pred CCcceeeeecccccccCCCCCCCCCCChhH--HHHHHHhhhhhhhhHHHhhcccCCCCCCCCCEEEEecCCCCchhHHHH
Q 026112 33 RRRPIELRRAGYNIELSAPLDNIPFSTSSE--RERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLN 110 (243)
Q Consensus 33 ~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ivG~~naGKSSLin 110 (243)
+..++++.+ .+++.+||.++.-....... ...... +......++........+ ..++.|+|+|+||+|||||+|
T Consensus 211 r~~lIe~~a-~l~a~idf~e~~~l~~~~t~~~~~~~~~-l~d~v~s~l~~~~~~e~l--q~gl~iaIvGrPNvGKSSLlN 286 (531)
T KOG1191|consen 211 RKILIEALA-GLEARIDFEEERPLEEIETVEIFIESLS-LLDDVLSHLNKADEIERL--QSGLQIAIVGRPNVGKSSLLN 286 (531)
T ss_pred HHHHHHHHh-ccceeechhhcCchhhccchhhhhHHHH-HHHHHHHHHHhhhhHHHh--hcCCeEEEEcCCCCCHHHHHH
Confidence 677888888 79999999764311111100 111111 000111222222222222 256899999999999999999
Q ss_pred HHhcccccccccCCCCceEEEEE---EEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC
Q 026112 111 ALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 187 (243)
Q Consensus 111 ~L~~~~~~~~vs~~~gtT~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~ 187 (243)
+|+.+ +.++|++.+|||||... ...|.++.++||+|+++. ..+.++. .-+++.......+|++++|+|+...
T Consensus 287 aL~~~-drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~-~~~~iE~---~gI~rA~k~~~~advi~~vvda~~~ 361 (531)
T KOG1191|consen 287 ALSRE-DRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREE-SNDGIEA---LGIERARKRIERADVILLVVDAEES 361 (531)
T ss_pred HHhcC-CceEeCCCCCcchhhheeEeecCCeEEEEEeccccccc-cCChhHH---HhHHHHHHHHhhcCEEEEEeccccc
Confidence 99999 77999999999999743 345899999999999882 1222211 1223333334449999999999777
Q ss_pred CChhhHHHHHHHHhc------------CCcEEEEeecCCCCCh
Q 026112 188 VKPRDHELISLMERS------------QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 188 ~~~~~~~~~~~l~~~------------~~p~i~v~nK~D~~~~ 218 (243)
....+..+.+.+... ..|++++.||.|+..+
T Consensus 362 ~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 362 DTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred ccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 777777766666543 2678999999999865
No 16
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.86 E-value=4.6e-20 Score=143.82 Aligned_cols=148 Identities=45% Similarity=0.704 Sum_probs=114.7
Q ss_pred EEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccC
Q 026112 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS 174 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (243)
|+++|.+|+|||||+|.|++.......++.+++|........+..+.++||||+............+......|+.....
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENREN 81 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChh
Confidence 78999999999999999995434466778888888887777677999999999987544444455566667777777667
Q ss_pred ccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHh--hCCCccccC
Q 026112 175 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK--ANNSLVQPV 242 (243)
Q Consensus 175 ~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~--~~~~~~~pi 242 (243)
++++++++|...........+.+++...+.|+++|+||+|+..+.+.......+...+. .....++|+
T Consensus 82 ~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 82 LKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 89999999988766667777888888888999999999999887777666666666664 333344454
No 17
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.85 E-value=1.4e-20 Score=139.54 Aligned_cols=113 Identities=24% Similarity=0.409 Sum_probs=86.5
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
+|+++|.+|+|||||+|+|++. +...++..+++|+...... .+..+.++||||+.+........ .....++.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~----~~~~~~~~ 75 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGK-KLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDG----KEIRKFLE 75 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS-TSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHH----HHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcc-ccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHH----HHHHHHHH
Confidence 5899999999999999999997 5578999999999884432 35678999999998754333211 12333444
Q ss_pred cccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeec
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK 212 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK 212 (243)
....+|++++|+|+.......+..+++.++ .+.|+++|+||
T Consensus 76 ~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 76 QISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 445599999999987754556678888887 78999999998
No 18
>PRK00089 era GTPase Era; Reviewed
Probab=99.85 E-value=6.5e-20 Score=157.10 Aligned_cols=132 Identities=26% Similarity=0.290 Sum_probs=97.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE--E-eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--K-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~--~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
..|+++|.||||||||+|+|++. +.+.+++.+.||++.... . .+..+.++||||+.+.. ....+ .+.....
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~-~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~--~~l~~---~~~~~~~ 79 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK--RALNR---AMNKAAW 79 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCC-ceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch--hHHHH---HHHHHHH
Confidence 47999999999999999999998 677889999998875432 2 24689999999987632 11111 1222223
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC-ChHHHHHHHHHHHH
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEE 230 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~-~~~~~~~~~~~l~~ 230 (243)
.....+|++++|+|++.++...+..+++.+...+.|+++|+||+|+. ...........+.+
T Consensus 80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~ 141 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSE 141 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHh
Confidence 33345999999999988777777788888887789999999999998 44555555544444
No 19
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=7.5e-20 Score=161.81 Aligned_cols=141 Identities=20% Similarity=0.213 Sum_probs=95.6
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.|+|+|.||||||||+|+|++. + ..++++|+||+....... +..+.++||||+.+..... ..+...++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~-k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~------~~Lg~~~l 232 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAA-K-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEG------AGLGIRFL 232 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCC-c-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccch------hhHHHHHH
Confidence 8999999999999999999988 4 589999999998766543 2469999999997643221 01222333
Q ss_pred hcccCccEEEEEEeCCC----CCChhhHHHHHHHHhc-----CCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccc
Q 026112 170 STRVSLKRVCLLIDTKW----GVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~----~~~~~~~~~~~~l~~~-----~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~ 240 (243)
+....+|++++|+|++. ........+++.+... ..|+++|+||+|+....+.......+.+.+. ....++
T Consensus 233 ~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~-~~~~Vi 311 (390)
T PRK12298 233 KHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALG-WEGPVY 311 (390)
T ss_pred HHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhC-CCCCEE
Confidence 44455999999999762 1222234555655543 5899999999999876655444444443322 112455
Q ss_pred cCC
Q 026112 241 PVV 243 (243)
Q Consensus 241 pi~ 243 (243)
|||
T Consensus 312 ~IS 314 (390)
T PRK12298 312 LIS 314 (390)
T ss_pred EEE
Confidence 553
No 20
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=1.6e-19 Score=151.82 Aligned_cols=133 Identities=23% Similarity=0.266 Sum_probs=96.7
Q ss_pred CCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCc--cchHHHHHHHH
Q 026112 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAY--AKEEVKDAWEE 163 (243)
Q Consensus 89 ~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~--~~~~~~~~~~~ 163 (243)
+++.|+|++.|+||+|||||++++++.. ..+.+||+||+.+..++. +..+++|||||+.+-. ....++.. +
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~q--A 240 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAK--PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQ--A 240 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCC--CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHH--H
Confidence 3688999999999999999999999995 789999999999988774 4589999999987642 22223221 1
Q ss_pred HHHHHHhcccCccEEEEEEeCCC--CCChh-hHHHHHHHHhc-CCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 164 LVKEYVSTRVSLKRVCLLIDTKW--GVKPR-DHELISLMERS-QTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~--~~~~~-~~~~~~~l~~~-~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
+ ..++.. .++|+|++|.+. +.+-+ ..++++.+... ..|+++|+||+|....+...+....+.
T Consensus 241 i--~AL~hl--~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~ 306 (346)
T COG1084 241 I--LALRHL--AGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVL 306 (346)
T ss_pred H--HHHHHh--cCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHHH
Confidence 1 111221 688999999765 44333 34666666544 579999999999998766655544433
No 21
>PRK15494 era GTPase Era; Provisional
Probab=99.83 E-value=1e-19 Score=158.76 Aligned_cols=142 Identities=23% Similarity=0.233 Sum_probs=100.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
...+|+++|.+|||||||+|+|++. ....+++.++||++.... ..+..+.+|||||+.+.... .. ..+.+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~-k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~--l~---~~~~r~ 124 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGE-KLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS--LE---KAMVRC 124 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCC-ceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc--HH---HHHHHH
Confidence 3469999999999999999999998 667788999999875432 23678999999998643211 11 122333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCC--CccccCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN--SLVQPVV 243 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~--~~~~pi~ 243 (243)
.......+|++++|+|+..++...+..+++.+...+.|.++|+||+|+... . ...+.+.+.... ..++|+|
T Consensus 125 ~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~----~~~~~~~l~~~~~~~~i~~iS 197 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-Y----LNDIKAFLTENHPDSLLFPIS 197 (339)
T ss_pred HHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-c----HHHHHHHHHhcCCCcEEEEEe
Confidence 333344599999999998877777777888887778899999999998643 1 233444444332 3455654
No 22
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.83 E-value=2.8e-19 Score=139.35 Aligned_cols=137 Identities=26% Similarity=0.347 Sum_probs=89.9
Q ss_pred EEEEecCCCCchhHHHHHHhccc-ccccccCCCCceEEEEEEE---e-CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK---L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~-~~~~vs~~~gtT~~~~~~~---~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.|+++|.+|+|||||+|+|++.. ........+++|.+..+.. . +..+.+|||||... +...+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-------------~~~~~ 68 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-------------FIKNM 68 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-------------HHHHH
Confidence 68999999999999999999752 1111122456676654332 2 56799999999632 11122
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCC-cEEEEeecCCCCChHHHHHHHHHHHHHHhh---CCCccccCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVFPIDVARRAMQIEESLKA---NNSLVQPVV 243 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~---~~~~~~pi~ 243 (243)
......+|++++|+|+++++.....+.+..+...+. |+++|+||+|+............+.+.+.. .+.+++|++
T Consensus 69 ~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (164)
T cd04171 69 LAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVS 147 (164)
T ss_pred HhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEe
Confidence 222334999999999987655555555555555565 999999999998765444445566666654 344555553
No 23
>PRK04213 GTP-binding protein; Provisional
Probab=99.83 E-value=3.8e-19 Score=144.04 Aligned_cols=138 Identities=31% Similarity=0.504 Sum_probs=95.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCcc-chHHHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVKEYV 169 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~~~~~~~~~~~ 169 (243)
..++|+++|.+|+|||||+|+|++.. ..++..+|+|++......+ .+.+|||||++.... .....+.+......|+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~--~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK--VRVGKRPGVTRKPNHYDWG-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCceeeCceEEeec-ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 46799999999999999999999873 4577788999887665545 699999999754321 1112333444444454
Q ss_pred h-cccCccEEEEEEeCCCCC-----------ChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 170 S-TRVSLKRVCLLIDTKWGV-----------KPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 170 ~-~~~~~d~v~~vvd~~~~~-----------~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
. ....++++++|+|+.... ...+.++...+...++|+++|+||+|+.... ......+.+.++
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~ 158 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEIAERLG 158 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH--HHHHHHHHHHhc
Confidence 3 445588999999975321 1234556677777789999999999997643 223344555544
No 24
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=3.3e-19 Score=160.74 Aligned_cols=140 Identities=26% Similarity=0.266 Sum_probs=104.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++. ....+++.+|+|++.... ..+..+.++||||+..........+.+. ..+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~--~~~ 248 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGE-ERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYS--VIR 248 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHH--HHH
Confidence 4689999999999999999999998 447789999999987432 3467899999999865322211111111 112
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
.+.....+|++++|+|+..+.+..+..++..+...+.|+++|+||+|+..+.........+...+.
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~ 314 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLP 314 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcc
Confidence 222334489999999999998899988888888889999999999999966555555555555544
No 25
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=2.4e-19 Score=155.69 Aligned_cols=142 Identities=18% Similarity=0.209 Sum_probs=95.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
...|+|+|.||||||||+|+|++. + ..++++++||.++..... +..+.++||||+.+..... ..+...
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a-~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~------~gLg~~ 229 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAA-K-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG------AGLGHR 229 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcC-C-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcc------ccHHHH
Confidence 568999999999999999999987 3 568999999999866432 4579999999987643221 123334
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCcccc
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~p 241 (243)
+++..+.++++++|+|++...+..+ ..+.+.+.. ...|+++|+||+|+....+.... .++..+...+..++|
T Consensus 230 flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~--~~~~~~~~~~~~i~~ 307 (335)
T PRK12299 230 FLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREK--RAALELAALGGPVFL 307 (335)
T ss_pred HHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHH--HHHHHHHhcCCCEEE
Confidence 4445556999999999875432222 345555543 26899999999999865433221 122223333445566
Q ss_pred CC
Q 026112 242 VV 243 (243)
Q Consensus 242 i~ 243 (243)
+|
T Consensus 308 iS 309 (335)
T PRK12299 308 IS 309 (335)
T ss_pred EE
Confidence 53
No 26
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.82 E-value=4.4e-19 Score=137.12 Aligned_cols=120 Identities=24% Similarity=0.347 Sum_probs=88.7
Q ss_pred EEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc
Q 026112 96 AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (243)
Q Consensus 96 ~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (243)
+++|.+|+|||||+|+|++. ....++..+++|++..... .+..+.+|||||+.+... .....+ ...+....
T Consensus 1 ~l~G~~~~GKssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~~~---~~~~~~~~ 74 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGR-RDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE--GISKEI---REQAELAI 74 (157)
T ss_pred CccCCCCCCHHHHHHHHhCC-cEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh--HHHHHH---HHHHHHHH
Confidence 47899999999999999998 4456778888988765433 367799999999876322 111111 11122222
Q ss_pred cCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHH
Q 026112 173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~ 221 (243)
..+|++++|+|+.++....+..+.+++...+.|+++|+||+|+......
T Consensus 75 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~ 123 (157)
T cd01894 75 EEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE 123 (157)
T ss_pred HhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH
Confidence 3489999999998777677777888888888999999999999876543
No 27
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.82 E-value=7.7e-19 Score=158.10 Aligned_cols=149 Identities=23% Similarity=0.238 Sum_probs=105.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++. ....+++.+|||++.... ..+..+.+|||||+..........+.+. ..+
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~--~~~ 247 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGE-ERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYS--VLR 247 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC-CeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHH--HHH
Confidence 4579999999999999999999998 446788999999986432 2366899999999865322111111111 111
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC-ChHHHHHHHHHHHHHHhhCC-CccccC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANN-SLVQPV 242 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~-~~~~~~~~~~~l~~~l~~~~-~~~~pi 242 (243)
.+.....+|++++|+|+.++.+..+..++..+...+.|+++|+||+|+. ...........+...+...+ .+++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 324 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFI 324 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEE
Confidence 2222334999999999999988888888888888899999999999998 44444555555555554322 344444
No 28
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=2.8e-19 Score=159.17 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=85.9
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.|+|+|.||||||||||+|++.. ..++++|+||..++.... +..+.++||||+.+.... +..+...|+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~------~~gLg~~fL 231 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE------GVGLGHQFL 231 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc------cchHHHHHH
Confidence 99999999999999999999983 567899999999876543 578999999999753221 122344455
Q ss_pred hcccCccEEEEEEeCCCC----CChhhHHHHHHHHh-----cCCcEEEEeecCCCCC
Q 026112 170 STRVSLKRVCLLIDTKWG----VKPRDHELISLMER-----SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~----~~~~~~~~~~~l~~-----~~~p~i~v~nK~D~~~ 217 (243)
+....++++++|+|++.. .......+.+.+.. ...|+++|+||+|+..
T Consensus 232 rhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~ 288 (424)
T PRK12297 232 RHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE 288 (424)
T ss_pred HHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC
Confidence 555669999999998642 11222345555543 3689999999999854
No 29
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=5.3e-19 Score=160.81 Aligned_cols=140 Identities=21% Similarity=0.193 Sum_probs=98.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++. ....+++.+|||++.... ..+..+.+|||||+............+..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~-~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~-- 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGE-ERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLR-- 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHH--
Confidence 4689999999999999999999998 446789999999986432 3466789999999854221110011111111
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
.......+|++++|+|++.+.+..+..++..+...+.|+++|+||+|+..+.........+.+.+.
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~ 352 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELA 352 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhcc
Confidence 111123499999999999888888888888888889999999999999865433333334444443
No 30
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.81 E-value=4.5e-19 Score=159.57 Aligned_cols=120 Identities=25% Similarity=0.343 Sum_probs=94.8
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
+|+++|.+|+|||||+|+|++. ..+.+++.+|+|++..... .+..+.+|||||+... .+.+...+......+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~--~~~~~~~~~~~~~~~-- 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGK-RDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEED--DDGLDKQIREQAEIA-- 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCc--chhHHHHHHHHHHHH--
Confidence 4899999999999999999998 5578899999999875543 3678999999998542 222222222223333
Q ss_pred cccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
...+|++++|+|+..+....+..+.+++...+.|+++|+||+|+....
T Consensus 76 -~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~ 123 (429)
T TIGR03594 76 -IEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKED 123 (429)
T ss_pred -HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccc
Confidence 344999999999998888888889999998899999999999987643
No 31
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.81 E-value=2e-19 Score=141.35 Aligned_cols=123 Identities=20% Similarity=0.200 Sum_probs=82.1
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCC-cEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGT-KLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.|+++|.+|||||||+|+|++.. ..++..+++|++..... .+. .+.++||||+.+..... ..+...++
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~--~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~------~~~~~~~~ 73 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK--PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG------KGLGHRFL 73 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC--ccccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc------CCchHHHH
Confidence 58999999999999999999873 46777788887654332 244 89999999985421111 01122222
Q ss_pred hcccCccEEEEEEeCCCC-CChhh-HHHHHHHHh-----cCCcEEEEeecCCCCChHHHHHH
Q 026112 170 STRVSLKRVCLLIDTKWG-VKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARR 224 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~-~~~~~-~~~~~~l~~-----~~~p~i~v~nK~D~~~~~~~~~~ 224 (243)
+....+|++++|+|++.+ ..... ..+.+.+.. .+.|+++|+||+|+.........
T Consensus 74 ~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~ 135 (170)
T cd01898 74 RHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFEL 135 (170)
T ss_pred HHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHH
Confidence 333348999999998865 22222 344444433 26899999999999876554443
No 32
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.81 E-value=1.1e-18 Score=136.92 Aligned_cols=125 Identities=24% Similarity=0.226 Sum_probs=83.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
|+|+++|.+|+|||||+|+|++.. ..+++++++|.++..... +..+.+|||||+.+....+. ..+.......+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--~~~~~~~~~~~ 76 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAK--PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEER--NTIEMQAITAL 76 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC--CccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCC--chHHHHHHHHH
Confidence 589999999999999999999984 345667888887765432 46899999999854211110 01111111111
Q ss_pred hcccCccEEEEEEeCCCCCC---hhhHHHHHHHHhc--CCcEEEEeecCCCCChHHHHH
Q 026112 170 STRVSLKRVCLLIDTKWGVK---PRDHELISLMERS--QTKYQVVLTKTDTVFPIDVAR 223 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~---~~~~~~~~~l~~~--~~p~i~v~nK~D~~~~~~~~~ 223 (243)
.. ..|++++|+|++.... .....+++.+... +.|+++|+||+|+........
T Consensus 77 ~~--~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~ 133 (168)
T cd01897 77 AH--LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE 133 (168)
T ss_pred Hh--ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH
Confidence 11 2588999999876422 2223566666554 789999999999987655443
No 33
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=5.5e-19 Score=159.34 Aligned_cols=141 Identities=21% Similarity=0.214 Sum_probs=94.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
...|+|+|.||||||||+|+|++. + ..++++|+||+++..... +..+.++||||+.+..... ..+...+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~a-k-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g------~gLg~~f 230 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAA-K-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEG------KGLGLDF 230 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcC-C-ccccccCcccccceEEEEEECCeEEEEEECCCCccccchh------hHHHHHH
Confidence 568999999999999999999997 3 567999999998765543 5689999999986532211 1222334
Q ss_pred HhcccCccEEEEEEeCCCCC----Chhh-HHHHHHHH--------------hcCCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 169 VSTRVSLKRVCLLIDTKWGV----KPRD-HELISLME--------------RSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~----~~~~-~~~~~~l~--------------~~~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
++....+|++++|+|++... ...+ ..+.+.|. ....|+++|+||+|+....+... .+.
T Consensus 231 LrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e---~l~ 307 (500)
T PRK12296 231 LRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAE---FVR 307 (500)
T ss_pred HHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHH---HHH
Confidence 44455599999999986411 1111 12222221 23689999999999976544332 334
Q ss_pred HHHhhCCCccccCC
Q 026112 230 ESLKANNSLVQPVV 243 (243)
Q Consensus 230 ~~l~~~~~~~~pi~ 243 (243)
..+...+..++|||
T Consensus 308 ~~l~~~g~~Vf~IS 321 (500)
T PRK12296 308 PELEARGWPVFEVS 321 (500)
T ss_pred HHHHHcCCeEEEEE
Confidence 44555566677764
No 34
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.81 E-value=1.1e-18 Score=141.70 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=81.9
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eC-CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LG-TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
+..++|+++|++|||||||+|+|++.. ..+.+.+++|.+..... .+ ..+.+|||||+.+..... ....+....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~ 115 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD--VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQ-LVEAFRSTL 115 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch--hccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHH-HHHHHHHHH
Confidence 456899999999999999999999983 34455556665543322 13 389999999985432221 111222221
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChHHH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~~~ 221 (243)
.....+|++++|+|++.+....+ ..+.+.+.. .+.|+++|+||+|+......
T Consensus 116 ----~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~ 171 (204)
T cd01878 116 ----EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL 171 (204)
T ss_pred ----HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH
Confidence 12234899999999987544433 233444443 35899999999999876543
No 35
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.80 E-value=5e-19 Score=153.54 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=94.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---C-CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
...|+|+|.||||||||+|+|++.. ..++++++||..+..... + ..+.++||||+.+..... ..+...
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~--~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~------~gLg~~ 228 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG------AGLGHR 228 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc------ccHHHH
Confidence 4689999999999999999999873 568999999988765442 3 689999999986532221 112233
Q ss_pred HHhcccCccEEEEEEeCCCC---CC-hhhHHHHHHHHh-----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCc
Q 026112 168 YVSTRVSLKRVCLLIDTKWG---VK-PRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 238 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~---~~-~~~~~~~~~l~~-----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~ 238 (243)
+++....++++++|+|++.. .. .....+.+.+.. ...|+++|+||+|+..........+.+.+. .+..
T Consensus 229 flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~---~~~~ 305 (329)
T TIGR02729 229 FLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKA---LGKP 305 (329)
T ss_pred HHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHH---cCCc
Confidence 34444459999999998753 11 122234444432 368999999999998765444433333332 2345
Q ss_pred cccCC
Q 026112 239 VQPVV 243 (243)
Q Consensus 239 ~~pi~ 243 (243)
++|+|
T Consensus 306 vi~iS 310 (329)
T TIGR02729 306 VFPIS 310 (329)
T ss_pred EEEEE
Confidence 55553
No 36
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.80 E-value=2.2e-18 Score=135.11 Aligned_cols=139 Identities=28% Similarity=0.260 Sum_probs=95.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE---EEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+|+|++. ......+.+++|++... ...+..+.+|||||+.+........+.+. ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~--~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE-ERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYS--VLRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc-cceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHH--HHHH
Confidence 368999999999999999999997 43556777888776532 22356799999999865321111111111 0111
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh--HHHHHHHHHHHHHHh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEESLK 233 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~--~~~~~~~~~l~~~l~ 233 (243)
+.....+|++++|+|+..+.......++..+...+.|+++|+||+|+... .........+++.+.
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLP 145 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcc
Confidence 22223489999999998877777777777777778999999999999876 344444555555544
No 37
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=1.1e-18 Score=158.83 Aligned_cols=121 Identities=23% Similarity=0.365 Sum_probs=94.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
+.|+|+++|.+|||||||+|+|++. ..+.+++.+|+|++..... .+..+.+|||||+... ...+...+......
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~-~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~--~~~~~~~~~~~~~~ 113 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGR-REAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPD--AKGLQASVAEQAEV 113 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCc-CcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCc--chhHHHHHHHHHHH
Confidence 4589999999999999999999998 5567889999999876543 3677999999998631 12222222222333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
++. .+|++++|+|++.+.+..+..+.+.+...+.|+++|+||+|+..
T Consensus 114 ~~~---~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 114 AMR---TADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred HHH---hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence 333 39999999999988777788888989888999999999999864
No 38
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.80 E-value=3.3e-18 Score=132.88 Aligned_cols=132 Identities=26% Similarity=0.248 Sum_probs=91.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
..+|+++|.+|+|||||+|+|++. ....+++.+.+++...... .+..+.++||||+....... ...+......+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~~~~~~ 79 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL--GERMVKAAWSA 79 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC-ceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH--HHHHHHHHHHH
Confidence 468999999999999999999998 5566666677776653322 24678999999987532211 11111222222
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC-ChHHHHHHHHHHH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIE 229 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~-~~~~~~~~~~~l~ 229 (243)
...+|++++|+|+.+........+...+...+.|+++|+||+|+. .+.........+.
T Consensus 80 ---~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~ 138 (168)
T cd04163 80 ---LKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLK 138 (168)
T ss_pred ---HHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHH
Confidence 234899999999987766666677777777789999999999998 4444444444443
No 39
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.80 E-value=1.5e-18 Score=139.72 Aligned_cols=126 Identities=22% Similarity=0.331 Sum_probs=87.1
Q ss_pred CEEEEecCCCCchhHHHHHHhccc-----ccccccCCCCceEEEEEEE---e--------------CCcEEEEeCCCCCC
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFFK---L--------------GTKLCLVDLPGYGF 150 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs~~~gtT~~~~~~~---~--------------~~~~~liDTpG~~~ 150 (243)
.+|+++|.+|+|||||+++|++.. +.......+|+|.+..+.. . +..+.+|||||+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~- 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA- 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence 379999999999999999999731 1122334556777654321 1 5689999999973
Q ss_pred CccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHH
Q 026112 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (243)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~ 230 (243)
.+...++.....+|++++|+|+..+......+.+......+.|+++|+||+|+..........+.+++
T Consensus 80 ------------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 147 (192)
T cd01889 80 ------------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKK 147 (192)
T ss_pred ------------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHH
Confidence 23334444444589999999998876665555555555568899999999999866555444555554
Q ss_pred H
Q 026112 231 S 231 (243)
Q Consensus 231 ~ 231 (243)
.
T Consensus 148 ~ 148 (192)
T cd01889 148 K 148 (192)
T ss_pred H
Confidence 3
No 40
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=2.8e-18 Score=154.78 Aligned_cols=119 Identities=26% Similarity=0.424 Sum_probs=93.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|+++|.+|+|||||+|+|++. ..+.+++.+|+|++..... .+..+.+|||||+... .......+......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~-~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGK-RDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPD--DDGFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCc--chhHHHHHHHHHHHHH
Confidence 68999999999999999999998 5567889999999875443 3678999999998652 1112222222222233
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
..+|++++|+|+..+.+..+..+.+++...+.|+++|+||+|+..
T Consensus 79 ---~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~ 123 (435)
T PRK00093 79 ---EEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPD 123 (435)
T ss_pred ---HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCcc
Confidence 349999999999988888888888889888999999999999765
No 41
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.79 E-value=3.2e-18 Score=138.42 Aligned_cols=138 Identities=14% Similarity=0.197 Sum_probs=96.3
Q ss_pred EEEEecCCCCchhHHHHHHhccccccccc-CCCCceEEEEEEE---eCCcEEEEeCCCCCCCccc-hHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAK-EEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs-~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~~~ 168 (243)
+|+++|.||+|||||+|+|++.. ....+ ..+++|++++... .+..+.++||||+.+.... +.+. ..+...+
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~-~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~---~~i~~~~ 77 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGRE-VFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLS---KEIVRCL 77 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCC-ccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHH---HHHHHHH
Confidence 79999999999999999999984 23332 2567888776543 3778999999999875432 2222 2333333
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhc-----CCcEEEEeecCCCCChHHHHHH----HHHHHHHHhhCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPIDVARR----AMQIEESLKANN 236 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-----~~p~i~v~nK~D~~~~~~~~~~----~~~l~~~l~~~~ 236 (243)
......+|++++|+|+.+ ++..+..+++.++.. ..++++|+|++|...+..+... ...++..++..+
T Consensus 78 ~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~ 153 (196)
T cd01852 78 SLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCG 153 (196)
T ss_pred HhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhC
Confidence 333456899999999887 788888888888664 3689999999998875433322 234455555433
No 42
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.79 E-value=4.8e-18 Score=137.19 Aligned_cols=131 Identities=19% Similarity=0.271 Sum_probs=94.9
Q ss_pred CEEEEecCCCCchhHHHHHHhccccc--------------ccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccch
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGV--------------VRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKE 155 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~--------------~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~ 155 (243)
.+|+++|.+|+|||||+++|+..... .......|+|.+..... .+..+.++||||+..
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~----- 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD----- 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH-----
Confidence 58999999999999999999864100 00112567777764333 356799999999732
Q ss_pred HHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHHHH-HHHHHHHHHHh
Q 026112 156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVA-RRAMQIEESLK 233 (243)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~~~-~~~~~l~~~l~ 233 (243)
+..........+|++++|+|+..+....+.+++..+...++| +++|+||+|+....+.. ...+++++.+.
T Consensus 78 --------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~ 149 (195)
T cd01884 78 --------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLS 149 (195)
T ss_pred --------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHH
Confidence 333334444559999999999988888888999999988987 78999999997544433 34456777766
Q ss_pred hCC
Q 026112 234 ANN 236 (243)
Q Consensus 234 ~~~ 236 (243)
..+
T Consensus 150 ~~g 152 (195)
T cd01884 150 KYG 152 (195)
T ss_pred Hhc
Confidence 543
No 43
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.79 E-value=3.3e-18 Score=132.13 Aligned_cols=121 Identities=26% Similarity=0.304 Sum_probs=86.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+.+|+++|++|+|||||+|+|++. ....+++.+++|.+..... .+..+.++||||+.+.... .... .....
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--~~~~---~~~~~ 74 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGR-DRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDE--IEKI---GIERA 74 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC-ceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcch--HHHH---HHHHH
Confidence 358999999999999999999998 4566788889988765432 2568999999998764321 1110 11112
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~ 220 (243)
......+|++++|+|++.+....+..++.. ..+.|+++|+||+|+.....
T Consensus 75 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~ 124 (157)
T cd04164 75 REAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSE 124 (157)
T ss_pred HHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCccc
Confidence 222234899999999987665555554443 45799999999999986543
No 44
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.79 E-value=4.5e-18 Score=161.54 Aligned_cols=123 Identities=24% Similarity=0.373 Sum_probs=96.4
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
...++|+++|.||+|||||+|+|++. +.+.+++.+|+|++..... .+..+.+|||||+... .+.+...+.....
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~-~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~ 349 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGR-REAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEAD--VEGIDSAIASQAQ 349 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCC--CccHHHHHHHHHH
Confidence 44679999999999999999999998 5578899999999976543 2568999999998642 1222222222222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
.++ ..+|++++|+|+..++...+..+.+.+...++|+++|+||+|+...
T Consensus 350 ~~~---~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 350 IAV---SLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQAS 398 (712)
T ss_pred HHH---HhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 333 3499999999999888888888999999899999999999998653
No 45
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.78 E-value=6.3e-18 Score=160.54 Aligned_cols=128 Identities=22% Similarity=0.228 Sum_probs=95.3
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE---EEeCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
...++|+++|.+|+|||||+|+|++. ....+++++|||++... ...+..+.+|||||+........-.+.+.. +
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~-~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~-~- 524 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHE-ERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSS-L- 524 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCc-cccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHH-H-
Confidence 34689999999999999999999998 44678899999998743 234778999999998643211110111111 1
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~ 220 (243)
+.......+|++++|+|++.+.+..+..++..+...+.|+++|+||+|+.....
T Consensus 525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~ 578 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFR 578 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhH
Confidence 112223459999999999998888888888888778999999999999987544
No 46
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.78 E-value=4.2e-18 Score=135.70 Aligned_cols=129 Identities=21% Similarity=0.272 Sum_probs=90.6
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccc--------------cCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRT--------------SDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEE 156 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~v--------------s~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~ 156 (243)
+|+++|.+|+|||||+|+|++....... ....++|.+..... .+..+.+|||||+.+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~------ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED------ 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH------
Confidence 4899999999999999999987321111 11234454433222 256799999999743
Q ss_pred HHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhC
Q 026112 157 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN 235 (243)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~ 235 (243)
+......++. .+|++++|+|+.++......+++..+...+.|+++|+||+|+..+.+.......+++.++..
T Consensus 75 ----~~~~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (189)
T cd00881 75 ----FSSEVIRGLS---VSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLI 146 (189)
T ss_pred ----HHHHHHHHHH---hcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccc
Confidence 1112222332 39999999999887777777777777777899999999999998666666666777766553
No 47
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.78 E-value=8.9e-18 Score=131.56 Aligned_cols=111 Identities=23% Similarity=0.359 Sum_probs=81.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE------eCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~------~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
|.|+++|.+|+|||||+|+|++.. ......+++|.+..... .+..+.+|||||... +..+..
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~----------~~~~~~ 68 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTN--VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA----------FTNMRA 68 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcc--cccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH----------HHHHHH
Confidence 579999999999999999999873 22334556776653222 146799999999632 112222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
.++ ..+|++++|+|++.+........+..+...++|+++|+||+|+...
T Consensus 69 ~~~---~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 69 RGA---SLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNA 117 (168)
T ss_pred HHH---hhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccc
Confidence 222 2389999999998766666666777777789999999999998753
No 48
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.77 E-value=5.2e-18 Score=138.43 Aligned_cols=136 Identities=16% Similarity=0.144 Sum_probs=89.0
Q ss_pred EEEEecCCCCchhHHHHHHhccccccccc------------------------------CCCCceEEEEEEE---eCCcE
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTS------------------------------DKPGLTQTINFFK---LGTKL 140 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs------------------------------~~~gtT~~~~~~~---~~~~~ 140 (243)
+|+++|++|+|||||+|+|+...+ ...+ ..+|+|++..... .+..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSK-SIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceE
Confidence 589999999999999999987632 1111 1267787764332 36789
Q ss_pred EEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCC-cEEEEeecCCCCCh-
Q 026112 141 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVFP- 218 (243)
Q Consensus 141 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-p~i~v~nK~D~~~~- 218 (243)
.++||||+.+ +..........+|++++|+|+..+....+.....++...+. ++++|+||+|+...
T Consensus 80 ~liDTpG~~~-------------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~ 146 (208)
T cd04166 80 IIADTPGHEQ-------------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYS 146 (208)
T ss_pred EEEECCcHHH-------------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCC
Confidence 9999999632 11112222345999999999988776666666666666665 47889999999752
Q ss_pred -HHHHHHHHHHHHHHhhCC---CccccCC
Q 026112 219 -IDVARRAMQIEESLKANN---SLVQPVV 243 (243)
Q Consensus 219 -~~~~~~~~~l~~~l~~~~---~~~~pi~ 243 (243)
.........+++.+...+ ..++||+
T Consensus 147 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iS 175 (208)
T cd04166 147 EEVFEEIVADYLAFAAKLGIEDITFIPIS 175 (208)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCceEEEEe
Confidence 223344445554444443 2355653
No 49
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.77 E-value=4.4e-18 Score=131.87 Aligned_cols=134 Identities=22% Similarity=0.206 Sum_probs=88.9
Q ss_pred EecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc
Q 026112 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (243)
Q Consensus 97 ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (243)
++|.+|+|||||+|++++.. ..++.++++|.+.... ..+..+.+|||||+.+...... ...+...++.. .
T Consensus 1 l~G~~~~GKssl~~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~----~~~~~~~~~~~-~ 73 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR--QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSE----DEKVARDFLLG-E 73 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc--ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCCh----hHHHHHHHhcC-C
Confidence 57999999999999999973 5677888888876432 2356799999999864322110 01233344433 4
Q ss_pred CccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 174 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 174 ~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
.+|++++|+|+... .....+...+...++|+++|+||+|+............+.+. .+..++|+
T Consensus 74 ~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~i 137 (158)
T cd01879 74 KPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSEL---LGVPVVPT 137 (158)
T ss_pred CCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHh---hCCCeEEE
Confidence 59999999998753 333455556666789999999999997654433333333333 23445554
No 50
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.77 E-value=3.9e-17 Score=138.60 Aligned_cols=148 Identities=20% Similarity=0.336 Sum_probs=101.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccC--------CCCceE-EEE---EEEeC--CcEEEEeCCCCCCCccchHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--------KPGLTQ-TIN---FFKLG--TKLCLVDLPGYGFAYAKEEV 157 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~--------~~gtT~-~~~---~~~~~--~~~~liDTpG~~~~~~~~~~ 157 (243)
.++|+++|.+|+|||||+|+|++.. ....+. ...|+. ... ....| ..+.+|||||+++.......
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~-~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTK-LIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCC-CccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 4689999999999999999999983 332221 223321 111 11123 36999999999876433221
Q ss_pred HHHHHH----HHHHHHhc-----------ccCccEEEEEEeCC-CCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHH
Q 026112 158 KDAWEE----LVKEYVST-----------RVSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 158 ~~~~~~----~~~~~~~~-----------~~~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~ 221 (243)
.+.... -...|+.. -..+|+++++++++ +++.+.+.++++.+.. ++|+++|+||+|++...+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~~~e~ 161 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLTPEEL 161 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCCHHHH
Confidence 111111 11122211 11378899999876 4677888889998876 7999999999999998888
Q ss_pred HHHHHHHHHHHhhCCCcccc
Q 026112 222 ARRAMQIEESLKANNSLVQP 241 (243)
Q Consensus 222 ~~~~~~l~~~l~~~~~~~~p 241 (243)
......+++.+..++..+++
T Consensus 162 ~~~k~~i~~~l~~~~i~~~~ 181 (276)
T cd01850 162 KEFKQRIMEDIEEHNIKIYK 181 (276)
T ss_pred HHHHHHHHHHHHHcCCceEC
Confidence 88888999999999887775
No 51
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.76 E-value=1.9e-17 Score=132.93 Aligned_cols=127 Identities=26% Similarity=0.420 Sum_probs=92.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccccc----------------ccCCCCceEE---EEEE--EeCCcEEEEeCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR----------------TSDKPGLTQT---INFF--KLGTKLCLVDLPGYGF 150 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~----------------vs~~~gtT~~---~~~~--~~~~~~~liDTpG~~~ 150 (243)
..+|+++|+.++|||||+++|++...... .....+.|.+ ..+. ..+..+.++||||+.+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 46899999999999999999997531100 0011233333 2333 4467899999999732
Q ss_pred CccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHH
Q 026112 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (243)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~ 230 (243)
+..........+|++++|+|+..++.....+.+..+...++|+++|+||+|+. ..+..+..+.+.+
T Consensus 83 -------------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~-~~~~~~~~~~~~~ 148 (188)
T PF00009_consen 83 -------------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI-EKELEEIIEEIKE 148 (188)
T ss_dssp -------------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS-HHHHHHHHHHHHH
T ss_pred -------------eeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch-hhhHHHHHHHHHH
Confidence 33333333455999999999999999999999999999999999999999999 5566666666664
Q ss_pred HH
Q 026112 231 SL 232 (243)
Q Consensus 231 ~l 232 (243)
.+
T Consensus 149 ~l 150 (188)
T PF00009_consen 149 KL 150 (188)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 52
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.75 E-value=5.8e-18 Score=133.51 Aligned_cols=119 Identities=23% Similarity=0.267 Sum_probs=78.0
Q ss_pred EecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---e-CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc
Q 026112 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (243)
Q Consensus 97 ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (243)
++|++|||||||+|+|++. .. .+++++++|.++.... . +..+.++||||+.+..... +.+...+....
T Consensus 1 iiG~~~~GKStll~~l~~~-~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~------~~~~~~~~~~~ 72 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNA-KP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG------RGLGNQFLAHI 72 (176)
T ss_pred CCCCCCCcHHHHHHHHhcC-Cc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC------CCccHHHHHHH
Confidence 5799999999999999998 33 6778888888764432 3 6789999999985421111 01111222222
Q ss_pred cCccEEEEEEeCCCCC-----Ch-hh-HHHHHHHHh----------cCCcEEEEeecCCCCChHHHHH
Q 026112 173 VSLKRVCLLIDTKWGV-----KP-RD-HELISLMER----------SQTKYQVVLTKTDTVFPIDVAR 223 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~-----~~-~~-~~~~~~l~~----------~~~p~i~v~nK~D~~~~~~~~~ 223 (243)
..+|++++|+|+.... .. .+ ..+...+.. .+.|+++|+||+|+........
T Consensus 73 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~ 140 (176)
T cd01881 73 RRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEE 140 (176)
T ss_pred hccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHH
Confidence 3489999999987652 11 11 122222221 3689999999999987655444
No 53
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.75 E-value=6.7e-17 Score=134.98 Aligned_cols=127 Identities=23% Similarity=0.182 Sum_probs=90.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
...+|+++|.+|+|||||+|+|++. ....++...++|..+..+. .+..+.+|||||+.+........+.....+.+
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~-~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~ 108 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGE-RKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKR 108 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence 4679999999999999999999998 5566778878888776543 36789999999998753222222222223344
Q ss_pred HHhcccCccEEEEEEeCCC-CCChhhHHHHHHHHhc-----CCcEEEEeecCCCCChH
Q 026112 168 YVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~~-----~~p~i~v~nK~D~~~~~ 219 (243)
|+.. ...|++++|..... .....+..+++.+... ..++++|+||+|...+.
T Consensus 109 ~l~~-~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 109 YLKK-KTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHhc-cCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 4432 24788888875542 4566677777777642 36899999999998654
No 54
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.74 E-value=2.5e-17 Score=156.48 Aligned_cols=139 Identities=20% Similarity=0.209 Sum_probs=97.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCcc---chHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA---KEEVKDAWEELVK 166 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~ 166 (243)
.+|+++|.||||||||+|+|++.. ..+++.+|+|.+..... .+..+.++||||+.+-.. ..... +....
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~--~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~---E~i~~ 78 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLD---EQIAC 78 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHH---HHHHH
Confidence 589999999999999999999984 57899999999865433 366899999999754211 01111 12222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
.++. ...+|++++|+|+++. +....+...+.+.++|+++|+||+|+.+........+.+.+.+ +.++.|+
T Consensus 79 ~~l~-~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L---G~pVvpi 148 (772)
T PRK09554 79 HYIL-SGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARL---GCPVIPL 148 (772)
T ss_pred HHHh-ccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHh---CCCEEEE
Confidence 3332 2348999999999864 3445566677788999999999999875544444445555544 3455554
No 55
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.74 E-value=5.3e-17 Score=130.96 Aligned_cols=111 Identities=26% Similarity=0.299 Sum_probs=77.2
Q ss_pred CEEEEecCCCCchhHHHHHHhccccccccc---------------CCCCceEEEE---EEEeCCcEEEEeCCCCCCCccc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS---------------DKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAK 154 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs---------------~~~gtT~~~~---~~~~~~~~~liDTpG~~~~~~~ 154 (243)
.+|+++|.+|+|||||+|+|++... .... ...|+|.... ....+..+.+|||||..+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~-~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~---- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSG-TFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD---- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcC-CCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH----
Confidence 4899999999999999999997311 1111 1234444432 223366899999999743
Q ss_pred hHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
+......++.. +|++++|+|++.+.......++..+...++|+++|+||+|+..
T Consensus 78 ------~~~~~~~~~~~---~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 78 ------FGGEVERVLSM---VDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPD 131 (194)
T ss_pred ------HHHHHHHHHHh---cCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 12233344433 8999999999876555555666666667899999999999974
No 56
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.74 E-value=3.8e-17 Score=138.22 Aligned_cols=136 Identities=21% Similarity=0.243 Sum_probs=95.3
Q ss_pred EEEEecCCCCchhHHHHHHhcccc----ccccc------------CCCCceEEEEE---EEeCCcEEEEeCCCCCCCccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWG----VVRTS------------DKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAK 154 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~----~~~vs------------~~~gtT~~~~~---~~~~~~~~liDTpG~~~~~~~ 154 (243)
+|+++|++|+|||||+|+|+.... ...+. ...|+|.+... ...+..+.++||||+.+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df--- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF--- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH---
Confidence 489999999999999999975321 11111 23466666433 334778999999997431
Q ss_pred hHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
......++ ..+|++++|+|+..++...+..+++.+...++|+++++||+|+... ........+++.++.
T Consensus 78 -------~~~~~~~l---~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a-~~~~~~~~l~~~l~~ 146 (270)
T cd01886 78 -------TIEVERSL---RVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGA-DFFRVVEQIREKLGA 146 (270)
T ss_pred -------HHHHHHHH---HHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC-CHHHHHHHHHHHhCC
Confidence 11122222 3389999999999888888888889888889999999999999753 344566777777776
Q ss_pred CCCccc-cCC
Q 026112 235 NNSLVQ-PVV 243 (243)
Q Consensus 235 ~~~~~~-pi~ 243 (243)
.....+ ||+
T Consensus 147 ~~~~~~~Pis 156 (270)
T cd01886 147 NPVPLQLPIG 156 (270)
T ss_pred CceEEEeccc
Confidence 544333 653
No 57
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.74 E-value=5.9e-17 Score=128.44 Aligned_cols=111 Identities=21% Similarity=0.219 Sum_probs=73.9
Q ss_pred EEEEecCCCCchhHHHHHHhcccccc-------c------ccCCCCceEEEEEE---E-----eCCcEEEEeCCCCCCCc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVV-------R------TSDKPGLTQTINFF---K-----LGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~-------~------vs~~~gtT~~~~~~---~-----~~~~~~liDTpG~~~~~ 152 (243)
+|+++|.+|+|||||+++|++..... . .....|+|...... . .+..+.+|||||+.+
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-- 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD-- 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh--
Confidence 68999999999999999999752100 0 01123444432211 1 144578999999753
Q ss_pred cchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
+......++.. +|++++|+|++.+....+...+..+...++|+++|+||+|+..
T Consensus 80 --------~~~~~~~~~~~---ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~ 133 (179)
T cd01890 80 --------FSYEVSRSLAA---CEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPS 133 (179)
T ss_pred --------hHHHHHHHHHh---cCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCc
Confidence 12233334333 8999999999876655555555555566899999999999864
No 58
>CHL00071 tufA elongation factor Tu
Probab=99.74 E-value=8.3e-17 Score=143.91 Aligned_cols=133 Identities=20% Similarity=0.261 Sum_probs=96.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc--------------ccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV--------------VRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA 153 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~--------------~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~ 153 (243)
...+|+++|.+|+|||||+|+|++.... ......+|+|.+..... .+..+.++||||+.+
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~--- 87 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD--- 87 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH---
Confidence 4578999999999999999999975210 01112377888864332 256789999999631
Q ss_pred chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHHHH-HHHHHHHHH
Q 026112 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVA-RRAMQIEES 231 (243)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~~~-~~~~~l~~~ 231 (243)
++.........+|++++|+|+..++..++.+++..+...++| +++|+||+|+....+.. ...+++.+.
T Consensus 88 ----------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~ 157 (409)
T CHL00071 88 ----------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVREL 157 (409)
T ss_pred ----------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 233333334459999999999988888888999999989999 77899999998765543 333566666
Q ss_pred HhhCC
Q 026112 232 LKANN 236 (243)
Q Consensus 232 l~~~~ 236 (243)
+...+
T Consensus 158 l~~~~ 162 (409)
T CHL00071 158 LSKYD 162 (409)
T ss_pred HHHhC
Confidence 66543
No 59
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.73 E-value=9.1e-17 Score=149.07 Aligned_cols=137 Identities=24% Similarity=0.354 Sum_probs=100.2
Q ss_pred EEEEecCCCCchhHHHHHHhccc-ccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~-~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.|+++|++|+|||||+|+|++.. +.......+|+|.++.+... +..+.+|||||+. .+...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe-------------~f~~~~~ 68 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE-------------KFISNAI 68 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH-------------HHHHHHH
Confidence 68999999999999999999852 11112335678888755432 5678999999962 2344444
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHHHHHHHHHHHHHHhhC----CCccccCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEESLKAN----NSLVQPVV 243 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~----~~~~~pi~ 243 (243)
.....+|++++|+|+++++..+..+.+..+...++| +++|+||+|+.+........+.+++.+... +.+++|+|
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vS 147 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTS 147 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEe
Confidence 445569999999999988777777888888888999 999999999998766555555666655543 34555654
No 60
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.73 E-value=1.3e-16 Score=129.20 Aligned_cols=116 Identities=23% Similarity=0.228 Sum_probs=78.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccC---CCCceEEEEEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---KPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~---~~gtT~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
++|+++|.+|+|||||+|+|++......... ...+|.....+.. ...+.+|||||+.+..... ..++..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~------~~~l~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPP------DDYLEE 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCH------HHHHHH
Confidence 5799999999999999999999632111111 1123444333322 3478999999997642221 112221
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
. ....+|++++|.|. +++..+..+++.+...+.|+++|+||+|+..+
T Consensus 76 ~--~~~~~d~~l~v~~~--~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~ 122 (197)
T cd04104 76 M--KFSEYDFFIIISST--RFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLS 122 (197)
T ss_pred h--CccCcCEEEEEeCC--CCCHHHHHHHHHHHHhCCCEEEEEecccchhh
Confidence 1 12347888887543 47788888999999889999999999999754
No 61
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.73 E-value=6.3e-17 Score=145.52 Aligned_cols=140 Identities=21% Similarity=0.259 Sum_probs=96.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccc-----------------------ccc------CCCCceEEEEEEEe---CC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------RTS------DKPGLTQTINFFKL---GT 138 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~-----------------------~vs------~~~gtT~~~~~~~~---~~ 138 (243)
...+|+++|++|+|||||+++|+...... .+. ..+|+|+++..... +.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 45789999999999999999999542110 001 15789999865543 67
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCC--CCChhhHHHHHHHHhcCC-cEEEEeecCCC
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLMERSQT-KYQVVLTKTDT 215 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~--~~~~~~~~~~~~l~~~~~-p~i~v~nK~D~ 215 (243)
.+.+|||||+.+ +...+......+|++++|+|+.. ++.....+.+..+...+. |+++|+||+|+
T Consensus 85 ~i~liDtpG~~~-------------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl 151 (425)
T PRK12317 85 YFTIVDCPGHRD-------------FVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDA 151 (425)
T ss_pred EEEEEECCCccc-------------chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 899999999743 11222223345999999999987 666666677777777775 59999999999
Q ss_pred CCh--HHHHHHHHHHHHHHhhCC-----CccccCC
Q 026112 216 VFP--IDVARRAMQIEESLKANN-----SLVQPVV 243 (243)
Q Consensus 216 ~~~--~~~~~~~~~l~~~l~~~~-----~~~~pi~ 243 (243)
... .......+.+.+.+...+ ..++|+|
T Consensus 152 ~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iS 186 (425)
T PRK12317 152 VNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVS 186 (425)
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEee
Confidence 752 233445556666555443 2455654
No 62
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.72 E-value=5.1e-17 Score=133.72 Aligned_cols=134 Identities=40% Similarity=0.589 Sum_probs=115.9
Q ss_pred CCCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccC-CCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHH
Q 026112 85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (243)
Q Consensus 85 ~~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~-~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (243)
...|....|+++++|.+|+|||||||.++........+. .+|.|+.++.+..+.++.++|.||++.+....+....|..
T Consensus 129 ~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 129 EDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred ccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhH
Confidence 344556779999999999999999999998754444444 8999999999999999999999998776555556677889
Q ss_pred HHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
+...|+-.+...-.+++.+|++-++...|...++++.+.++|+.+|+||||....
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKK 263 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhh
Confidence 9999999988889999999999999999999999999999999999999998743
No 63
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.71 E-value=2.8e-16 Score=146.34 Aligned_cols=137 Identities=22% Similarity=0.325 Sum_probs=102.7
Q ss_pred EEEEecCCCCchhHHHHHHhccc-ccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~-~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.|+++|..++|||||+++|++.. +........|.|.+..+... +..+.+|||||+. .+...+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-------------~fi~~m 68 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-------------KFLSNM 68 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-------------HHHHHH
Confidence 68999999999999999999852 11223344688888765432 4568999999972 233444
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHHHHHHHHHHHHHHhhCC---CccccCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEESLKANN---SLVQPVV 243 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~---~~~~pi~ 243 (243)
......+|++++|+|+.+++.+++.+.+..+...++| +++|+||+|+.+........+.+++.+...+ .+++|||
T Consensus 69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VS 147 (614)
T PRK10512 69 LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTA 147 (614)
T ss_pred HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 4445559999999999998888888888888888888 5799999999877666666777777776544 3555654
No 64
>PRK12736 elongation factor Tu; Reviewed
Probab=99.71 E-value=2.6e-16 Score=140.10 Aligned_cols=134 Identities=21% Similarity=0.293 Sum_probs=97.8
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccc-----cc---------cccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-----VV---------RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAY 152 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~-----~~---------~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~ 152 (243)
....+|+++|+.++|||||+++|++... .. ......|+|.++..... +..+.++||||+.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~--- 86 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA--- 86 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH---
Confidence 3457999999999999999999987310 00 01125678888754433 5678999999963
Q ss_pred cchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHHHHH-HHHHHHH
Q 026112 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVAR-RAMQIEE 230 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~~~~-~~~~l~~ 230 (243)
.+...++.....+|++++|+|+..++...+.+++..+...++| +++|+||+|+.+..+..+ ..+++++
T Consensus 87 ----------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~ 156 (394)
T PRK12736 87 ----------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRE 156 (394)
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHH
Confidence 2344444555569999999999988888888899999888998 678999999986555443 3346666
Q ss_pred HHhhCC
Q 026112 231 SLKANN 236 (243)
Q Consensus 231 ~l~~~~ 236 (243)
.+...+
T Consensus 157 ~l~~~~ 162 (394)
T PRK12736 157 LLSEYD 162 (394)
T ss_pred HHHHhC
Confidence 666544
No 65
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.71 E-value=2.4e-16 Score=131.08 Aligned_cols=133 Identities=23% Similarity=0.274 Sum_probs=93.9
Q ss_pred EEEEecCCCCchhHHHHHHhcccccc----ccc------------CCCCceEEE---EEEEeCCcEEEEeCCCCCCCccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVV----RTS------------DKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAK 154 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~----~vs------------~~~gtT~~~---~~~~~~~~~~liDTpG~~~~~~~ 154 (243)
+|+++|.+|+|||||+++|+...... .+. ...|.|... .+...+..+.+|||||+.+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f--- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF--- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch---
Confidence 48999999999999999998752110 011 011223222 22234678999999998541
Q ss_pred hHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
......+++. +|++++|+|+..+.......+.+.+...++|+++++||+|+... .....++.+++.+..
T Consensus 78 -------~~~~~~~l~~---aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a-~~~~~~~~i~~~~~~ 146 (237)
T cd04168 78 -------IAEVERSLSV---LDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGA-DLEKVYQEIKEKLSS 146 (237)
T ss_pred -------HHHHHHHHHH---hCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCC-CHHHHHHHHHHHHCC
Confidence 1112223332 89999999999888777778888888889999999999999854 356778888988887
Q ss_pred CCCccc
Q 026112 235 NNSLVQ 240 (243)
Q Consensus 235 ~~~~~~ 240 (243)
...+++
T Consensus 147 ~~~~~~ 152 (237)
T cd04168 147 DIVPMQ 152 (237)
T ss_pred CeEEEE
Confidence 655554
No 66
>PRK12735 elongation factor Tu; Reviewed
Probab=99.71 E-value=3.7e-16 Score=139.17 Aligned_cols=133 Identities=21% Similarity=0.310 Sum_probs=94.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc------cc--------ccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW------GV--------VRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYA 153 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~------~~--------~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~ 153 (243)
...+|+++|.+++|||||+++|++.. .. .......|+|.++..... +..+.++||||+.
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~---- 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA---- 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH----
Confidence 45789999999999999999999621 10 011125678888754432 5578999999973
Q ss_pred chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEE-EEeecCCCCChHHHH-HHHHHHHHH
Q 026112 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDVA-RRAMQIEES 231 (243)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i-~v~nK~D~~~~~~~~-~~~~~l~~~ 231 (243)
.+..........+|++++|+|+..+...++.+++..+...++|.+ +|+||+|+.+..+.. .....+++.
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~ 157 (396)
T PRK12735 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 234444455556999999999998877788888888888899966 579999998644433 333456666
Q ss_pred HhhCC
Q 026112 232 LKANN 236 (243)
Q Consensus 232 l~~~~ 236 (243)
+...+
T Consensus 158 l~~~~ 162 (396)
T PRK12735 158 LSKYD 162 (396)
T ss_pred HHHcC
Confidence 65543
No 67
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.71 E-value=5.2e-17 Score=135.86 Aligned_cols=141 Identities=19% Similarity=0.193 Sum_probs=98.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
....|.+||.||||||||+|+|+... ..+.+|++||..+.+... ...+.+.|.||+.+..... ..+.-
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~n------kGlG~ 266 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMN------KGLGY 266 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccC--CcccccceeeeccccceeeccccceeEeccCcccccccccc------CcccH
Confidence 35678999999999999999999984 689999999998866543 2349999999987754433 23445
Q ss_pred HHHhcccCccEEEEEEeCCCC---CChhh-HHHHHHHHh-----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWG---VKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS 237 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~---~~~~~-~~~~~~l~~-----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~ 237 (243)
.|+++.+.++.++||+|.+.. ...+. ..+...+.. ...|.++|+||+|+.+.+ ...+..+.+.++..
T Consensus 267 ~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae--~~~l~~L~~~lq~~-- 342 (366)
T KOG1489|consen 267 KFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE--KNLLSSLAKRLQNP-- 342 (366)
T ss_pred HHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH--HHHHHHHHHHcCCC--
Confidence 666677779999999998754 11111 223333332 257899999999996432 23345666666543
Q ss_pred ccccCC
Q 026112 238 LVQPVV 243 (243)
Q Consensus 238 ~~~pi~ 243 (243)
.++||+
T Consensus 343 ~V~pvs 348 (366)
T KOG1489|consen 343 HVVPVS 348 (366)
T ss_pred cEEEee
Confidence 455553
No 68
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.71 E-value=5.1e-16 Score=119.13 Aligned_cols=121 Identities=26% Similarity=0.320 Sum_probs=85.7
Q ss_pred EecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc
Q 026112 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (243)
Q Consensus 97 ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (243)
++|++|+|||||+|+|++. .....+..+++|........ +..+.++||||+.+....... +......+..
T Consensus 1 i~G~~gsGKstl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~---~~~~~~~~~~-- 74 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQ-EVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE---REELARRVLE-- 74 (163)
T ss_pred CcCCCCCCHHHHHHHHhCc-cccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhh---HHHHHHHHHH--
Confidence 5799999999999999998 44556777777777654332 568999999998764322210 0112222222
Q ss_pred cCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHH
Q 026112 173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARR 224 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~ 224 (243)
.+|++++|+|+..........+.......+.|+++|+||+|+..+.+....
T Consensus 75 -~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~ 125 (163)
T cd00880 75 -RADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEEL 125 (163)
T ss_pred -hCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHH
Confidence 389999999998776555555456666678999999999999987655543
No 69
>PLN03127 Elongation factor Tu; Provisional
Probab=99.70 E-value=4.5e-16 Score=140.18 Aligned_cols=132 Identities=20% Similarity=0.258 Sum_probs=94.5
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccc-----ccc---------cccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQW-----GVV---------RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAY 152 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~-----~~~---------~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~ 152 (243)
....+|+++|+.++|||||+++|++.. ... .....+|+|.+...... +..+.++||||+.+
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~-- 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD-- 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc--
Confidence 356789999999999999999997321 000 11223788888754443 45789999999853
Q ss_pred cchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHHHHHHH-HHHHH
Q 026112 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRA-MQIEE 230 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~~~~~~-~~l~~ 230 (243)
++.........+|++++|+|+..+...++.+++..+...++| +++|+||+|+.+..+..+.. ..+++
T Consensus 137 -----------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~ 205 (447)
T PLN03127 137 -----------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRE 205 (447)
T ss_pred -----------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHH
Confidence 222222333349999999999988888889999999999999 57899999998755544433 35555
Q ss_pred HHhh
Q 026112 231 SLKA 234 (243)
Q Consensus 231 ~l~~ 234 (243)
.+..
T Consensus 206 ~l~~ 209 (447)
T PLN03127 206 LLSF 209 (447)
T ss_pred HHHH
Confidence 5543
No 70
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.70 E-value=1.5e-16 Score=123.73 Aligned_cols=110 Identities=17% Similarity=0.230 Sum_probs=69.4
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (243)
+|+++|.+|+|||||+|++++.. .....+..+.+...........+.++||||... . ......++.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~------~----~~~~~~~~~--- 66 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAE-LVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEK------M----RTVWKCYLE--- 66 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-cccccCccCcceEEEEeCCceEEEEEECCCCHh------H----HHHHHHHhc---
Confidence 48999999999999999999883 222233233222211112245799999999632 1 222233333
Q ss_pred CccEEEEEEeCCCCCC--hhhHHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 174 SLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 174 ~~d~v~~vvd~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
.+|++++|+|+++..+ .....+.+.+.. .+.|+++|+||+|+..
T Consensus 67 ~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 67 NTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 3899999999876531 122223333332 4789999999999964
No 71
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.70 E-value=5.6e-16 Score=125.99 Aligned_cols=137 Identities=23% Similarity=0.307 Sum_probs=87.5
Q ss_pred EEEEecCCCCchhHHHHHHhccc-ccccccCCCCceEEEEEEE------------------------------------e
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK------------------------------------L 136 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~-~~~~vs~~~gtT~~~~~~~------------------------------------~ 136 (243)
+|+++|+.|+|||||+.+|++.. +........+.|..+.+.. .
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 78999999999999999998752 0000001111121111000 0
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-CChhhHHHHHHHHhcCC-cEEEEeecCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQT-KYQVVLTKTD 214 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-~~~~~~~~~~~l~~~~~-p~i~v~nK~D 214 (243)
...+.+|||||+. .+...++.....+|++++|+|+..+ ........+..+...+. |+++|+||+|
T Consensus 82 ~~~i~~iDtPG~~-------------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~D 148 (203)
T cd01888 82 VRHVSFVDCPGHE-------------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKID 148 (203)
T ss_pred ccEEEEEECCChH-------------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchh
Confidence 1578999999952 2444555555568999999999864 34444555665655554 6999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhC---CCccccCC
Q 026112 215 TVFPIDVARRAMQIEESLKAN---NSLVQPVV 243 (243)
Q Consensus 215 ~~~~~~~~~~~~~l~~~l~~~---~~~~~pi~ 243 (243)
+..........+.+++.+... +..++|+|
T Consensus 149 l~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vS 180 (203)
T cd01888 149 LVKEEQALENYEQIKKFVKGTIAENAPIIPIS 180 (203)
T ss_pred ccCHHHHHHHHHHHHHHHhccccCCCcEEEEe
Confidence 987666666666777766543 34455553
No 72
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.70 E-value=5.3e-16 Score=131.10 Aligned_cols=136 Identities=21% Similarity=0.242 Sum_probs=89.9
Q ss_pred CEEEEecCCCCchhHHHHHHhccccc-cc---c----------cCC------CCceEE---EEEEEeCCcEEEEeCCCCC
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGV-VR---T----------SDK------PGLTQT---INFFKLGTKLCLVDLPGYG 149 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~-~~---v----------s~~------~gtT~~---~~~~~~~~~~~liDTpG~~ 149 (243)
.+|+++|++|+|||||+++|+..... .. + .++ .+.+.. ..+...+..+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 48999999999999999999864211 00 1 110 011111 1233347789999999974
Q ss_pred CCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
+. ......++ ..+|++++|+|+..+.......+++.+...++|+++++||+|+.... .....+.++
T Consensus 83 df----------~~~~~~~l---~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~-~~~~~~~l~ 148 (267)
T cd04169 83 DF----------SEDTYRTL---TAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRD-PLELLDEIE 148 (267)
T ss_pred HH----------HHHHHHHH---HHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCC-HHHHHHHHH
Confidence 31 11111222 23899999999988777666777777777789999999999986543 334466777
Q ss_pred HHHhhCCCccc-cC
Q 026112 230 ESLKANNSLVQ-PV 242 (243)
Q Consensus 230 ~~l~~~~~~~~-pi 242 (243)
+.++....+++ ||
T Consensus 149 ~~l~~~~~~~~~Pi 162 (267)
T cd04169 149 EELGIDCTPLTWPI 162 (267)
T ss_pred HHHCCCceeEEecc
Confidence 77776555444 44
No 73
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.69 E-value=4.4e-16 Score=128.05 Aligned_cols=137 Identities=18% Similarity=0.235 Sum_probs=89.4
Q ss_pred EEEEecCCCCchhHHHHHHhccccc-----------------------------ccccCCCCceEEEEEEE---eCCcEE
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTINFFK---LGTKLC 141 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~-----------------------------~~vs~~~gtT~~~~~~~---~~~~~~ 141 (243)
+|+++|.+++|||||+.+|+..... .......|+|++..... .+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999999743210 00111456787764433 477899
Q ss_pred EEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-------CChhhHHHHHHHHhcC-CcEEEEeecC
Q 026112 142 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQ-TKYQVVLTKT 213 (243)
Q Consensus 142 liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~~~~~~~~~~~l~~~~-~p~i~v~nK~ 213 (243)
++||||+.+ +...+......+|++++|+|+..+ ........+..+...+ .|+++|+||+
T Consensus 81 liDtpG~~~-------------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~ 147 (219)
T cd01883 81 ILDAPGHRD-------------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKM 147 (219)
T ss_pred EEECCChHH-------------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcc
Confidence 999999632 222333334459999999998863 3334445555555556 5899999999
Q ss_pred CCCC----hHHHHHHHHHHHHHHhhCC-----CccccCC
Q 026112 214 DTVF----PIDVARRAMQIEESLKANN-----SLVQPVV 243 (243)
Q Consensus 214 D~~~----~~~~~~~~~~l~~~l~~~~-----~~~~pi~ 243 (243)
|+.. ........+.++..+...+ .+++|++
T Consensus 148 Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iS 186 (219)
T cd01883 148 DDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPIS 186 (219)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEee
Confidence 9983 3345556666666665543 3456654
No 74
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.69 E-value=5.9e-16 Score=137.86 Aligned_cols=133 Identities=22% Similarity=0.296 Sum_probs=96.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-----ccc---------cccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVV---------RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYA 153 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-----~~~---------~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~ 153 (243)
...+|+++|..++|||||+++|++.. ... ......|+|.+...... +..+.+|||||+.+
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~--- 87 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD--- 87 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH---
Confidence 45789999999999999999998431 000 11123678888754433 45699999999732
Q ss_pred chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEE-EEeecCCCCChHHHHH-HHHHHHHH
Q 026112 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDVAR-RAMQIEES 231 (243)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i-~v~nK~D~~~~~~~~~-~~~~l~~~ 231 (243)
+...++.....+|++++|+|+..+...++.+++..+...++|.+ +|+||+|+.+..+..+ ..+++++.
T Consensus 88 ----------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~ 157 (394)
T TIGR00485 88 ----------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (394)
T ss_pred ----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHH
Confidence 33444445556899999999998888888888888888899865 6899999987655433 33466666
Q ss_pred HhhCC
Q 026112 232 LKANN 236 (243)
Q Consensus 232 l~~~~ 236 (243)
+...+
T Consensus 158 l~~~~ 162 (394)
T TIGR00485 158 LSEYD 162 (394)
T ss_pred HHhcC
Confidence 66554
No 75
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.69 E-value=3.1e-17 Score=137.51 Aligned_cols=195 Identities=15% Similarity=0.157 Sum_probs=126.5
Q ss_pred hhhhccccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHH---HHhhhhhhhhHHHhhc-cc
Q 026112 9 KNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERI---EENIFRNKLEFFAAAK-VS 84 (243)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~ 84 (243)
++++.+.+|+-.+..+|...|+..-+.++....++. +.+..+. ....+.+++ .+.-+++.++.....+ .+
T Consensus 97 a~T~earlqvalAempy~~~rl~r~~~hl~r~~g~~---v~gsges---~id~d~~rllr~kea~lrKeL~~vrrkr~~r 170 (410)
T KOG0410|consen 97 AVTAEARLQVALAEMPYVGGRLERELQHLRRQSGGQ---VKGSGES---IIDRDIRRLLRIKEAQLRKELQRVRRKRQRR 170 (410)
T ss_pred hhhHHHHHhhhhhcCccccchHHHHHHHHHhcCCCc---ccCccch---HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 567788999999999999999977677666555332 3333332 122222111 1111233333332222 22
Q ss_pred CCCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE----EEeCCcEEEEeCCCCCCCccchHHHHH
Q 026112 85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF----FKLGTKLCLVDLPGYGFAYAKEEVKDA 160 (243)
Q Consensus 85 ~~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~----~~~~~~~~liDTpG~~~~~~~~~~~~~ 160 (243)
..+...+.|.|+++|++|||||||+++|++.. ....+..+.|-|+.. .+.|..+.+.||-||.... +. .
T Consensus 171 ~gr~~~s~pviavVGYTNaGKsTLikaLT~Aa--l~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdL-P~----~ 243 (410)
T KOG0410|consen 171 VGREGESSPVIAVVGYTNAGKSTLIKALTKAA--LYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDL-PI----Q 243 (410)
T ss_pred hccccCCCceEEEEeecCccHHHHHHHHHhhh--cCccchhheeccchhhhccCCCCcEEEEeechhhhhhC-cH----H
Confidence 44455678999999999999999999999652 444555566666532 2347889999999986421 11 1
Q ss_pred HHHHHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhcCCc-------EEEEeecCCCC
Q 026112 161 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTK-------YQVVLTKTDTV 216 (243)
Q Consensus 161 ~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~~p-------~i~v~nK~D~~ 216 (243)
+-..+...+.....+|++++|+|.+++..+.. ..++..+...++| ++-|.||.|..
T Consensus 244 LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 244 LVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred HHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence 22334445555667999999999998754443 5678888887765 78899999975
No 76
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.69 E-value=3.7e-16 Score=123.58 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=72.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
..++|+++|++|+|||||+++|++. ......+..|..... ....+..+.+|||||... +..+...++.
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~-~~~~~~~t~g~~~~~-~~~~~~~l~l~D~~G~~~----------~~~~~~~~~~ 80 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGE-DIDTISPTLGFQIKT-LEYEGYKLNIWDVGGQKT----------LRPYWRNYFE 80 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC-CCCCcCCccccceEE-EEECCEEEEEEECCCCHH----------HHHHHHHHhC
Confidence 4579999999999999999999987 333333333322211 112256789999999632 1223333443
Q ss_pred cccCccEEEEEEeCCCCCCh--hhHHHHHHHH---hcCCcEEEEeecCCCCCh
Q 026112 171 TRVSLKRVCLLIDTKWGVKP--RDHELISLME---RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~--~~~~~~~~l~---~~~~p~i~v~nK~D~~~~ 218 (243)
.+|++++|+|++...+. ....+...+. ..+.|+++|+||+|+...
T Consensus 81 ---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 81 ---STDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred ---CCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 38999999998764211 1122222222 246899999999999754
No 77
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.69 E-value=4.6e-16 Score=121.33 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=71.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||++++++.. .++.+.+++.+... ... ...+.+|||||..+ +..+...
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 69 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY---FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEE----------FSAMREQ 69 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC---CCcccCCCccceEEEEEEECCEEEEEEEEECCCCcc----------hhHHHHH
Confidence 589999999999999999999873 24444555443211 112 23578999999643 2233444
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|++...+... ..+...+. ..+.|+++|+||+|+...
T Consensus 70 ~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 70 YMRT---GEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQ 122 (164)
T ss_pred HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccccc
Confidence 4443 899999999876422221 22333332 236899999999999754
No 78
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.68 E-value=6.3e-16 Score=146.54 Aligned_cols=113 Identities=25% Similarity=0.385 Sum_probs=87.4
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.+.|.|+++|++|+|||||+++|.+. . ...+..+|.|.+...+. .+..+.||||||+.. +..+..
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~-~-v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~----------F~~m~~ 355 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKT-N-VAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEA----------FTAMRA 355 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhC-C-ccccccCceeeeccEEEEEECCEEEEEEECCCCcc----------chhHHH
Confidence 46799999999999999999999876 3 23445567777765433 267899999999753 122222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
++ ...+|++++|+|+.++...+..+.+..+...++|+++|+||+|+..
T Consensus 356 rg---a~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 356 RG---AQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred hh---hhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccc
Confidence 22 2348999999999988888888888888888999999999999964
No 79
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=3e-16 Score=129.40 Aligned_cols=121 Identities=24% Similarity=0.244 Sum_probs=83.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE---EEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
...+|+++|.||+|||||+|+|++. ....++..+-+|..... ...+..+.+|||||+++....+. .+...+..
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~-~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~---~~r~~~~d 113 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQG-EVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDA---EHRQLYRD 113 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhc-cCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhH---HHHHHHHH
Confidence 4568889999999999999999976 33555544433333221 12357899999999998544331 12223333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHh--cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER--SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~--~~~p~i~v~nK~D~~~~ 218 (243)
.+...|++++++|+.++.-..+.+++..+.. .+.|+++|+|.+|...+
T Consensus 114 ---~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 114 ---YLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEP 163 (296)
T ss_pred ---HhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhcc
Confidence 3344899999999887766666666655543 35899999999998765
No 80
>PRK09866 hypothetical protein; Provisional
Probab=99.68 E-value=2.6e-15 Score=136.99 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=64.4
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcC--CcEEEEeecCCC
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTDT 215 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~--~p~i~v~nK~D~ 215 (243)
..+.++||||+..+... .. ...+... ...+|+|++|+|+.......+..+++.++..+ .|+++|+||+|+
T Consensus 230 ~QIIFVDTPGIhk~~~~-~L----~k~M~eq---L~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl 301 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQP-HL----QKMLNQQ---LARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQ 301 (741)
T ss_pred CCEEEEECCCCCCccch-HH----HHHHHHH---HhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccC
Confidence 47899999999763221 11 1222222 33499999999998877888888999998877 499999999999
Q ss_pred CChHH--HHHHHHHHHHHHhh---CCCccccCC
Q 026112 216 VFPID--VARRAMQIEESLKA---NNSLVQPVV 243 (243)
Q Consensus 216 ~~~~~--~~~~~~~l~~~l~~---~~~~~~pi~ 243 (243)
....+ .......+...+.. ....++|||
T Consensus 302 ~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVS 334 (741)
T PRK09866 302 QDRNSDDADQVRALISGTLMKGCITPQQIFPVS 334 (741)
T ss_pred CCcccchHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 75222 22333333333332 234577875
No 81
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.68 E-value=3.2e-16 Score=143.21 Aligned_cols=130 Identities=22% Similarity=0.285 Sum_probs=99.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCC--CccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGF--AYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~--~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.||+|||||+|+|+|.+ ..+++.||+|.+-.... .+..+.++|+||.-. +.+.| +...++
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~--q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D------E~Var~ 75 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN--QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED------EKVARD 75 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC--ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch------HHHHHH
Confidence 469999999999999999999995 88999999999976554 377799999999643 22222 234444
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
|+. ....|+++.|+|+++- +....+.=++.+.+.|+++++|++|...........+.+.+.++
T Consensus 76 ~ll-~~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG 138 (653)
T COG0370 76 FLL-EGKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLG 138 (653)
T ss_pred HHh-cCCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhC
Confidence 444 2458999999999864 55556666677789999999999998776666666666666554
No 82
>PRK00049 elongation factor Tu; Reviewed
Probab=99.68 E-value=1.3e-15 Score=135.63 Aligned_cols=132 Identities=21% Similarity=0.307 Sum_probs=96.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccc-----ccc---------ccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----VVR---------TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYA 153 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~-----~~~---------vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~ 153 (243)
...+|+++|..++|||||+++|++... ... .....|+|.+...... +..+.++||||+.
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~---- 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH----
Confidence 457899999999999999999997310 000 1125678888754443 5679999999973
Q ss_pred chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEE-EEeecCCCCChHHHH-HHHHHHHHH
Q 026112 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDVA-RRAMQIEES 231 (243)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i-~v~nK~D~~~~~~~~-~~~~~l~~~ 231 (243)
.+..........+|++++|+|+..+....+.+++..+...++|++ +++||+|+....+.. .....+++.
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~ 157 (396)
T PRK00049 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHH
Confidence 234444444566999999999998888888889999998999976 589999998644433 334466666
Q ss_pred HhhC
Q 026112 232 LKAN 235 (243)
Q Consensus 232 l~~~ 235 (243)
+...
T Consensus 158 l~~~ 161 (396)
T PRK00049 158 LSKY 161 (396)
T ss_pred HHhc
Confidence 6653
No 83
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.68 E-value=1.4e-15 Score=140.91 Aligned_cols=113 Identities=22% Similarity=0.351 Sum_probs=86.3
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CC-cEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GT-KLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~-~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
.+.|+|+++|++|+|||||+++|.+. . ......+|+|.+...+.. +. .+.+|||||+.. +..+.
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~-~-v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~----------F~~~r 152 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKT-K-VAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA----------FTSMR 152 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhC-C-cccccCCceeecceEEEEEECCCcEEEEEECCCCcc----------hhhHH
Confidence 46689999999999999999999987 3 233455678877644332 33 799999999743 12222
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.+ ....+|++++|+|+.++..++..+.+..+...++|+++++||+|+..
T Consensus 153 ~r---ga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 153 AR---GAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred Hh---hhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECccccc
Confidence 22 23348999999999988878888888888888999999999999964
No 84
>PLN03126 Elongation factor Tu; Provisional
Probab=99.68 E-value=1.3e-15 Score=137.90 Aligned_cols=133 Identities=21% Similarity=0.256 Sum_probs=96.5
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccc--------------cccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG--------------VVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~--------------~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~ 152 (243)
....+|+++|.+++|||||+++|+.... ........|.|.+..... .+..+.++||||+.+
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~-- 156 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD-- 156 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH--
Confidence 4567899999999999999999996311 001122356777764332 367899999999732
Q ss_pred cchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHHHHH-HHHHHHH
Q 026112 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVAR-RAMQIEE 230 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~~~~-~~~~l~~ 230 (243)
++.........+|++++|+|+..+...+..+++..+...++| +++++||+|+.+.++..+ ..+++++
T Consensus 157 -----------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~ 225 (478)
T PLN03126 157 -----------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRE 225 (478)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHH
Confidence 333334444458999999999988888888899989889998 788999999987555433 3346777
Q ss_pred HHhhC
Q 026112 231 SLKAN 235 (243)
Q Consensus 231 ~l~~~ 235 (243)
.+...
T Consensus 226 ~l~~~ 230 (478)
T PLN03126 226 LLSSY 230 (478)
T ss_pred HHHhc
Confidence 76653
No 85
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.67 E-value=3.1e-16 Score=132.65 Aligned_cols=131 Identities=19% Similarity=0.193 Sum_probs=92.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE----eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
--|.++|.|||||||||++++... ..+++||+||..++... .+.++.+-|.||+.+..+.. ..+..+|
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~Ak--PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G------~GLG~~F 231 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAK--PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEG------VGLGLRF 231 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcC--CcccCCccccccCcccEEEecCCCcEEEecCcccccccccC------CCccHHH
Confidence 367899999999999999999984 88999999999875433 35679999999998754322 1344566
Q ss_pred HhcccCccEEEEEEeCCCCC----ChhhHHHHHHHHhc-----CCcEEEEeecCCCCCh-HHHHHHHHHHHHH
Q 026112 169 VSTRVSLKRVCLLIDTKWGV----KPRDHELISLMERS-----QTKYQVVLTKTDTVFP-IDVARRAMQIEES 231 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~----~~~~~~~~~~l~~~-----~~p~i~v~nK~D~~~~-~~~~~~~~~l~~~ 231 (243)
+++.+.+.++++|||.+..- .+.-..+...|... .+|.++|+||+|+..+ +++....+.+.+.
T Consensus 232 LrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~ 304 (369)
T COG0536 232 LRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA 304 (369)
T ss_pred HHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh
Confidence 66666699999999976421 11123344445433 6899999999996554 4444444444433
No 86
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.67 E-value=5.7e-16 Score=120.67 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=70.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
++|+++|.+|||||||++++.+.. ....+.+|+.+... ... ...+.+|||||... +..+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI---FVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ----------FTAMRDL 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC---CCcccCCchhhhEEEEEEECCEEEEEEEEECCCccc----------cchHHHH
Confidence 589999999999999999999763 22333444432211 111 24567899999643 1223333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|.+...+... ..+++.+.. .+.|+++|+||+|+...
T Consensus 69 ~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (163)
T cd04136 69 YIKN---GQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDE 121 (163)
T ss_pred Hhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 4333 899999999875422222 233444432 25899999999999753
No 87
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.67 E-value=1.1e-15 Score=120.26 Aligned_cols=136 Identities=16% Similarity=0.123 Sum_probs=80.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
..+|+++|.+|+|||||++++++...........|.+........ ...+.+|||||... +..+...+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~ 73 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES----------FRSITRSY 73 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHHHH
Confidence 369999999999999999999987321212223333332222222 34788999999421 22233333
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
+. .+|++++|+|++...+..+ ..++..+.. .+.|+++|+||+|+...... ..+..+......+..++++
T Consensus 74 ~~---~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~e~ 146 (168)
T cd01866 74 YR---GAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREV--SYEEGEAFAKEHGLIFMET 146 (168)
T ss_pred hc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCC--CHHHHHHHHHHcCCEEEEE
Confidence 33 3899999999875422222 234444433 25899999999999743221 1122333334444445554
No 88
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.67 E-value=1.5e-15 Score=118.74 Aligned_cols=112 Identities=17% Similarity=0.122 Sum_probs=70.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+|+++|.+|+|||||++++++........+..+.+....... ....+.+|||||... +..+...++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~ 70 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER----------FQTMHASYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchh----------hhhhhHHHh
Confidence 3799999999999999999987632111111111111111111 134678999999532 233444444
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc--CCcEEEEeecCCCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVF 217 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~p~i~v~nK~D~~~ 217 (243)
.. +|++++|+|.+.+.+..+ ..++..+... +.|+++|+||+|+..
T Consensus 71 ~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~ 118 (161)
T cd04124 71 HK---AHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDP 118 (161)
T ss_pred CC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCch
Confidence 43 899999999876533322 3455555443 689999999999853
No 89
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.67 E-value=7.7e-16 Score=119.80 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=72.0
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE--Ee-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~--~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|++|+|||||+|+|++.. ...+..++++.+.... .. + ..+.+|||||... +..+...+
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~----------~~~~~~~~ 69 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDT--FDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQER----------FRSLIPSY 69 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHHHH
Confidence 79999999999999999999883 2234455555554222 22 2 3588999999532 22333444
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHH-Hhc--CCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-ERS--QTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~~~--~~p~i~v~nK~D~~~ 217 (243)
+. .+|++++|+|.+.+.+... ..++..+ ... +.|+++|+||+|+..
T Consensus 70 ~~---~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~ 119 (161)
T cd01861 70 IR---DSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD 119 (161)
T ss_pred hc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccc
Confidence 43 3899999999876422222 2344433 233 389999999999954
No 90
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.67 E-value=3.8e-15 Score=122.47 Aligned_cols=125 Identities=18% Similarity=0.242 Sum_probs=83.0
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCC---------------CCceEEE---EEEEe----------CCcEEEEeC
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDK---------------PGLTQTI---NFFKL----------GTKLCLVDL 145 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~---------------~gtT~~~---~~~~~----------~~~~~liDT 145 (243)
+|+++|..++|||||+++|+...+ ...... .|.|... ..... +..+.+|||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g-~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAG-IISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC-CCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 799999999999999999987532 111111 1222221 11111 456889999
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC------ChH
Q 026112 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV------FPI 219 (243)
Q Consensus 146 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~------~~~ 219 (243)
||+.+. ......+++ .+|++++|+|+..+.......++..+...++|+++|+||+|+. ++.
T Consensus 81 PG~~~f----------~~~~~~~l~---~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~ 147 (222)
T cd01885 81 PGHVDF----------SSEVTAALR---LCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPE 147 (222)
T ss_pred CCcccc----------HHHHHHHHH---hcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHH
Confidence 998541 112222332 3999999999998888888888888877789999999999986 455
Q ss_pred HHHHHHHHHHHHH
Q 026112 220 DVARRAMQIEESL 232 (243)
Q Consensus 220 ~~~~~~~~l~~~l 232 (243)
+....+..+.+.+
T Consensus 148 ~~~~~~~~ii~~~ 160 (222)
T cd01885 148 EAYQRLARIIEQV 160 (222)
T ss_pred HHHHHHHHHHHHH
Confidence 4444443333333
No 91
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.67 E-value=1.1e-15 Score=117.73 Aligned_cols=110 Identities=17% Similarity=0.168 Sum_probs=71.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccc-cCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~v-s~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
++|+++|.+|+|||||+|++++.. .... .+..+.+....... ....+.+|||||... +......+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~ 69 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGK-FDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER----------FRSITPSY 69 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCc-CCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHH----------HHHHHHHH
Confidence 479999999999999999999873 2222 22333333332222 235688999999632 22333344
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTV 216 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~ 216 (243)
+. .+|++++|+|+++...... ..++..+... ..|+++|+||+|+.
T Consensus 70 ~~---~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 70 YR---GAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred hc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 33 3899999999876321111 3355555443 48999999999997
No 92
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.67 E-value=5e-16 Score=120.65 Aligned_cols=111 Identities=19% Similarity=0.186 Sum_probs=71.7
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (243)
+|+++|.+|+|||||++++++.. .....+..+.+..... ..+..+.+|||||... +......++..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~-~~~~~~~i~D~~G~~~----------~~~~~~~~~~~-- 66 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVE-YKNVSFTVWDVGGQDK----------IRPLWKHYYEN-- 66 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEE-ECCEEEEEEECCCChh----------hHHHHHHHhcc--
Confidence 58999999999999999999983 3333344444333222 2356899999999643 11222333333
Q ss_pred CccEEEEEEeCCCCC--ChhhHHHHHHHH---hcCCcEEEEeecCCCCChH
Q 026112 174 SLKRVCLLIDTKWGV--KPRDHELISLME---RSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 174 ~~d~v~~vvd~~~~~--~~~~~~~~~~l~---~~~~p~i~v~nK~D~~~~~ 219 (243)
+|++++|+|+..+. ......+...+. ..+.|+++|+||+|+....
T Consensus 67 -~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 116 (158)
T cd00878 67 -TNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL 116 (158)
T ss_pred -CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc
Confidence 89999999988641 111112222222 2468999999999998644
No 93
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.67 E-value=3.8e-16 Score=122.33 Aligned_cols=112 Identities=17% Similarity=0.186 Sum_probs=68.3
Q ss_pred EEEEecCCCCchhHHHHHHhccccc--ccccCCCCceEEEEE---EEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGV--VRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~--~~vs~~~gtT~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|++|+|||||+|+|++.... ........+|..... ...+..+.+|||||... +..+...+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~ 70 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES----------LRSLWDKY 70 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChh----------hHHHHHHH
Confidence 4899999999999999999875210 011111222332222 12367899999999743 12223333
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHH-HHH---hcCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELIS-LME---RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~-~l~---~~~~p~i~v~nK~D~~~~ 218 (243)
+. .+|++++|+|+........ ..++. .+. ..+.|+++|+||+|+...
T Consensus 71 ~~---~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 71 YA---ECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred hC---CCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 33 3899999999875321111 12222 222 236899999999998764
No 94
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.67 E-value=7.4e-16 Score=119.91 Aligned_cols=111 Identities=18% Similarity=0.250 Sum_probs=71.3
Q ss_pred EEEEecCCCCchhHHHHHHhccc-ccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~-~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (243)
+|+++|.+|||||||+++|++.. ......+..|.+... +...+..+.+|||||... +..+...++.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~-~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~-- 67 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES-FEKGNLSFTAFDMSGQGK----------YRGLWEHYYK-- 67 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE-EEECCEEEEEEECCCCHh----------hHHHHHHHHc--
Confidence 48899999999999999999863 122334444443322 222356789999999642 1223334443
Q ss_pred cCccEEEEEEeCCCCCChhh-HHHHHHH-H-----hcCCcEEEEeecCCCCCh
Q 026112 173 VSLKRVCLLIDTKWGVKPRD-HELISLM-E-----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~-----~~~~p~i~v~nK~D~~~~ 218 (243)
.+|++++|+|++...+... ...+..+ . ..+.|+++|+||+|+...
T Consensus 68 -~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 68 -NIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred -cCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 3999999999886532211 1222222 2 236899999999999754
No 95
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.66 E-value=1.5e-15 Score=117.93 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=69.8
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
++|+++|.+|+|||||+|++++.. ....+.+|+.+... ... ...+.+|||||... +..+...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~l~~~ 68 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE----------YSAMRDQ 68 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC---CcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcc----------hHHHHHH
Confidence 589999999999999999999873 22333334332211 111 23477899999632 2334444
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~ 218 (243)
|+.. ++++++|+|.....+... ..+...+. ..+.|+++|+||+|+...
T Consensus 69 ~~~~---~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~ 121 (162)
T cd04138 69 YMRT---GEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR 121 (162)
T ss_pred HHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 5544 899999999775322122 12333332 236899999999999753
No 96
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.66 E-value=1e-15 Score=121.22 Aligned_cols=111 Identities=20% Similarity=0.267 Sum_probs=71.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
..+|+++|.+|+|||||+++|++... ....+..+.+.. .....+..+.++||||... ....| ..++.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~-~~~~~t~~~~~~-~~~~~~~~~~l~D~~G~~~------~~~~~----~~~~~- 81 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEV-VHTSPTIGSNVE-EIVYKNIRFLMWDIGGQES------LRSSW----NTYYT- 81 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccceE-EEEECCeEEEEEECCCCHH------HHHHH----HHHhh-
Confidence 46899999999999999999987632 223333333221 1222356799999999632 12222 23333
Q ss_pred ccCccEEEEEEeCCCCCCh--hhHHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 172 RVSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~--~~~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
.+|++++|+|++..... ....+.+.+.. .+.|+++++||+|+..
T Consensus 82 --~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 82 --NTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred --cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 39999999998764221 12233333332 2589999999999875
No 97
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.66 E-value=1.9e-15 Score=118.17 Aligned_cols=111 Identities=20% Similarity=0.213 Sum_probs=70.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|||||||+|++++... .....+.++.+. ..... + ..+.+|||||... +..+...
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~ 71 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEF--NLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER----------YRAITSA 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHH----------HHHHHHH
Confidence 6899999999999999999998732 222223333222 11112 2 3688999999532 2333344
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
++. .++++++|+|.++..+... ..++..+.. .+.|+++|+||+|+...
T Consensus 72 ~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~ 123 (165)
T cd01868 72 YYR---GAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL 123 (165)
T ss_pred HHC---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 443 3899999999875322222 234444433 25899999999998754
No 98
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.66 E-value=8.4e-16 Score=121.22 Aligned_cols=111 Identities=18% Similarity=0.174 Sum_probs=70.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
.++|+++|.+|+|||||+++|..... ....+..|.+.. .....+..+.+|||||... +..+...++..
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~-~~~~~t~g~~~~-~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~~ 76 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVE-TVTYKNVKFNVWDVGGQDK----------IRPLWRHYYTG 76 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCC-ccccCCcccceE-EEEECCEEEEEEECCCCHH----------HHHHHHHHhcc
Confidence 47999999999999999999987632 222222222221 1112356799999999632 12223334433
Q ss_pred ccCccEEEEEEeCCCCCCh--hhHHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 172 RVSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~--~~~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
+|++++|+|++..... ....+.+.+.. .+.|+++|+||+|+..
T Consensus 77 ---a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 77 ---TQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred ---CCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 8999999998764221 22233333332 3589999999999864
No 99
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.66 E-value=6.1e-15 Score=121.55 Aligned_cols=128 Identities=21% Similarity=0.194 Sum_probs=90.3
Q ss_pred EEEEecCCCCchhHHHHHHhccccc-----ccc-------cCCCCceEEE---------------------------EEE
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGV-----VRT-------SDKPGLTQTI---------------------------NFF 134 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~-----~~v-------s~~~gtT~~~---------------------------~~~ 134 (243)
+|+++|..++|||||+++|+..... ... .-..|.|..+ ...
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 4789999999999999999853100 000 0001222110 011
Q ss_pred EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc--cCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeec
Q 026112 135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK 212 (243)
Q Consensus 135 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK 212 (243)
..+..+.++||||+.. +........ ..+|++++|+|+..+....+.+++.++...++|+++|+||
T Consensus 81 ~~~~~i~liDtpG~~~-------------~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK 147 (224)
T cd04165 81 KSSKLVTFIDLAGHER-------------YLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTK 147 (224)
T ss_pred eCCcEEEEEECCCcHH-------------HHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEC
Confidence 1256799999999732 222222222 2489999999999988899999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhh
Q 026112 213 TDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 213 ~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
+|+............+.+.+..
T Consensus 148 ~D~~~~~~~~~~~~~l~~~L~~ 169 (224)
T cd04165 148 IDLAPANILQETLKDLKRILKV 169 (224)
T ss_pred ccccCHHHHHHHHHHHHHHhcC
Confidence 9999887788888888887763
No 100
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.66 E-value=1.1e-15 Score=143.76 Aligned_cols=113 Identities=21% Similarity=0.372 Sum_probs=85.5
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE-------eCCcEEEEeCCCCCCCccchHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYAKEEVKDAWE 162 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~-------~~~~~~liDTpG~~~~~~~~~~~~~~~ 162 (243)
.+.|.|+++|++|+|||||+++|++.. ...+..+|.|.++..+. .+..+.+|||||+.. +.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~--~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~----------F~ 309 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQ--IAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA----------FS 309 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhcc--CccccCCccccccceEEEEEEecCCceEEEEEECCcHHH----------HH
Confidence 467899999999999999999999873 22344566666543222 146899999999632 22
Q ss_pred HHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 163 ~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.+...++. .+|++++|+|+..+...+..+.+..+...++|+++|+||+|+..
T Consensus 310 ~mr~rg~~---~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 310 SMRSRGAN---VTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKAN 361 (742)
T ss_pred HHHHHHHH---HCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccc
Confidence 33333333 38999999999888777777888888888999999999999975
No 101
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.66 E-value=2e-15 Score=118.56 Aligned_cols=114 Identities=19% Similarity=0.181 Sum_probs=71.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|++|+|||||++++++........+..+.+........ ...+.+|||||... +..+...+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----------~~~~~~~~ 72 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER----------FRTITTAY 72 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHH----------HHHHHHHH
Confidence 369999999999999999999987321222222232222222221 24688999999532 22233333
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
+. .+|++++|+|++.+.+... ..++..+.. .+.|+++|.||+|+...
T Consensus 73 ~~---~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~ 123 (167)
T cd01867 73 YR---GAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEK 123 (167)
T ss_pred hC---CCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 33 3899999999876422222 234444433 35799999999999853
No 102
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.66 E-value=2.7e-15 Score=122.00 Aligned_cols=125 Identities=21% Similarity=0.293 Sum_probs=76.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE-----eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~-----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
|.|+++|++|+|||||++.|..... ....+.++....... .+..+.+|||||+.. . ......
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~---~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~------~----~~~~~~ 67 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKY---RSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPK------L----RDKLLE 67 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC---CCccCcEeecceEEEeecCCCCceEEEEECCCCHH------H----HHHHHH
Confidence 5799999999999999999998731 112222222222222 156799999999742 1 222233
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh---HHHHHHHH-----hcCCcEEEEeecCCCCChHHHHHHHHHHHHHH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD---HELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~---~~~~~~l~-----~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l 232 (243)
++... ++++++|+|+........ ..+...+. ..++|+++|+||+|+............+++++
T Consensus 68 ~~~~~--~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei 138 (203)
T cd04105 68 TLKNS--AKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKEL 138 (203)
T ss_pred HHhcc--CCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHH
Confidence 33331 399999999876421111 12222222 13799999999999986554444455555444
No 103
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.66 E-value=2.9e-15 Score=116.67 Aligned_cols=111 Identities=21% Similarity=0.208 Sum_probs=69.5
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe-----CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~-----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
+|+++|.+|+|||||++++++... . ....+....+... ... +..+.+|||||.. .+..+..
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~ 69 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIF-T-KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE----------EFDAITK 69 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-C-CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH----------HHHHhHH
Confidence 799999999999999999998731 1 1111222222211 111 3468899999942 1334444
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh--cCCcEEEEeecCCCCChH
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~p~i~v~nK~D~~~~~ 219 (243)
.+++. +|++++|+|.....+... ..++..+.. .+.|+++|+||+|+....
T Consensus 70 ~~~~~---~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 122 (162)
T cd04106 70 AYYRG---AQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQA 122 (162)
T ss_pred HHhcC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhccccc
Confidence 45443 899999999875422211 233333332 368999999999997543
No 104
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.66 E-value=1.4e-15 Score=126.78 Aligned_cols=128 Identities=20% Similarity=0.181 Sum_probs=92.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
....|+++|.||+|||||.|.+.|. ++..++....||+.-...- ....+.++||||+........- .....+...
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~-kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~-~l~~s~lq~ 148 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQ-KVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRH-HLMMSVLQN 148 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCC-ccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhH-HHHHHhhhC
Confidence 3568999999999999999999999 8899999999998764432 2567999999998764322110 111223334
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhc-CCcEEEEeecCCCCChHH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-~~p~i~v~nK~D~~~~~~ 220 (243)
+......+|+|++|+|++..-......++..+... .+|-++|+||.|+..+..
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~ 202 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKR 202 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhh
Confidence 44555669999999998853333444556555543 689999999999987644
No 105
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.66 E-value=3e-15 Score=138.45 Aligned_cols=111 Identities=23% Similarity=0.354 Sum_probs=80.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCC-CceEEEEEEEe---------------------CCcEEEEeCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINFFKL---------------------GTKLCLVDLPGY 148 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~-gtT~~~~~~~~---------------------~~~~~liDTpG~ 148 (243)
+.|.|+++|++|+|||||+|+|++.. .....+ ++|+++..... ...+.+|||||+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~---v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~ 79 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSA---VAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH 79 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc---cccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc
Confidence 45899999999999999999999872 223333 35554211110 023889999996
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.. +..+...++. .+|++++|+|++++......+.+..+...++|+++|+||+|+..
T Consensus 80 e~----------f~~l~~~~~~---~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 80 EA----------FTNLRKRGGA---LADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred Hh----------HHHHHHHHHh---hCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 32 2223333333 39999999999988778888888888888999999999999974
No 106
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.66 E-value=8.1e-16 Score=117.52 Aligned_cols=101 Identities=20% Similarity=0.206 Sum_probs=65.8
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (243)
+|+++|.+|+|||||+|+|++.. .. +. .|..+.+. ..+|||||... .....+..+. ....
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~-~~----~~-~t~~~~~~-----~~~iDt~G~~~-----~~~~~~~~~~----~~~~ 61 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE-IL----YK-KTQAVEYN-----DGAIDTPGEYV-----ENRRLYSALI----VTAA 61 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc-cc----cc-cceeEEEc-----CeeecCchhhh-----hhHHHHHHHH----HHhh
Confidence 79999999999999999999873 11 11 12222221 17899999621 0111122222 2234
Q ss_pred CccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 174 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 174 ~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.+|++++|+|++.+.+.....+.+. ...|+++|+||+|+.+
T Consensus 62 ~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 62 DADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAE 102 (142)
T ss_pred cCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCC
Confidence 5999999999887655444444333 2459999999999975
No 107
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.65 E-value=2.9e-15 Score=122.63 Aligned_cols=140 Identities=19% Similarity=0.241 Sum_probs=88.0
Q ss_pred EEEEecCCCCchhHHHHHHhccccccccc-CCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs-~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
+|+++|.+|+||||++|.|+|.. ....+ ...++|..+... ..|..+.+|||||+.++...+. .....+.+...
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~-~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~--~~~~~i~~~l~ 78 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKE-VFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDE--EIIREIKRCLS 78 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS--SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHH--HHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc-ceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHH--HHHHHHHHHHH
Confidence 79999999999999999999984 22222 234455555433 2378899999999977643321 11222332222
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhc-----CCcEEEEeecCCCCChHHHHHHHH-----HHHHHHhhCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPIDVARRAM-----QIEESLKANNS 237 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-----~~p~i~v~nK~D~~~~~~~~~~~~-----~l~~~l~~~~~ 237 (243)
......|++++|++.. .++..+...++.+... ...+++|+|.+|...+..+...+. .+++.+...+.
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~ 155 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG 155 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC
Confidence 2344589999999988 7888888888777643 457999999999887765433332 35555555443
No 108
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.65 E-value=1.2e-15 Score=119.15 Aligned_cols=112 Identities=18% Similarity=0.172 Sum_probs=69.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+|+++|.+|+|||||+|++++........+..+......... ....+.+|||||... +..+...++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~ 70 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE----------YLEVRNEFY 70 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHH----------HHHHHHHHh
Confidence 3799999999999999999998742221122111111111111 235688999999632 122333333
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh--------cCCcEEEEeecCCCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER--------SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--------~~~p~i~v~nK~D~~~ 217 (243)
. .+|++++|+|.++..+... ..++..+.. .+.|+++|+||+|+..
T Consensus 71 ~---~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 71 K---DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred c---cCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence 3 3899999999876422111 234433332 3578999999999974
No 109
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.65 E-value=1.1e-15 Score=118.87 Aligned_cols=110 Identities=22% Similarity=0.206 Sum_probs=68.4
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (243)
+|+++|.+|+|||||+++|.... .....+..+.+.. .....+..+.+|||||... +..+...++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~--- 65 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGE-VVTTIPTIGFNVE-TVTYKNLKFQVWDLGGQTS----------IRPYWRCYYS--- 65 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCC-CcCcCCccCcCeE-EEEECCEEEEEEECCCCHH----------HHHHHHHHhc---
Confidence 58999999999999999997763 2211111111111 1112356789999999642 1222333333
Q ss_pred CccEEEEEEeCCCCCC--hhhHHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 174 SLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 174 ~~d~v~~vvd~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
.+|++++|+|++.... .....+...++. .+.|+++|+||+|+...
T Consensus 66 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 66 NTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 3999999999875321 112233333332 36899999999999754
No 110
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.65 E-value=3.6e-15 Score=116.84 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=69.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
++|+++|.+|+|||||++++++... .....+..+.+.. .... ...+.+|||||... +......
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~ 70 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER----------FRTITSS 70 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHh----------HHHHHHH
Confidence 5899999999999999999998631 1222232232222 1111 34688999999532 2223333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
++. .+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+...
T Consensus 71 ~~~---~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 122 (166)
T cd01869 71 YYR---GAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK 122 (166)
T ss_pred HhC---cCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccc
Confidence 433 3899999999876421111 233444433 25799999999998754
No 111
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.65 E-value=3e-15 Score=117.35 Aligned_cols=114 Identities=17% Similarity=0.157 Sum_probs=69.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE-EEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~-~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+|+++|.+|+|||||++++++........+..|++.... .... ...+.+|||||... +..+...++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~----------~~~~~~~~~ 71 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER----------YRTITTAYY 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH----------HHHHHHHHc
Confidence 5899999999999999999998732111112112111111 1111 24688999999532 122333333
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChH
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
..+|++++|+|.+...+... ..+++.+.. ...|+++|+||+|+....
T Consensus 72 ---~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 122 (165)
T cd01865 72 ---RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER 122 (165)
T ss_pred ---cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccc
Confidence 34999999999875421111 234444433 257899999999997543
No 112
>PRK00007 elongation factor G; Reviewed
Probab=99.65 E-value=2.2e-15 Score=142.84 Aligned_cols=131 Identities=19% Similarity=0.221 Sum_probs=97.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccc----ccccc------------CCCCceEEEE---EEEeCCcEEEEeCCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWG----VVRTS------------DKPGLTQTIN---FFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~----~~~vs------------~~~gtT~~~~---~~~~~~~~~liDTpG~~~~ 151 (243)
...+|+++|.+|+|||||+|+|+.... ...+. ...|+|.+.. +...+..+.++||||+.+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~- 87 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD- 87 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH-
Confidence 456999999999999999999974311 11122 2556777653 333478899999999743
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHH
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 231 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~ 231 (243)
+..........+|++++|+|+..++..++..++..+...++|+++++||+|+.... .....+.+++.
T Consensus 88 ------------f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~-~~~~~~~i~~~ 154 (693)
T PRK00007 88 ------------FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGAD-FYRVVEQIKDR 154 (693)
T ss_pred ------------HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHH
Confidence 11112222333899999999999999999999999999999999999999998654 55677778877
Q ss_pred HhhC
Q 026112 232 LKAN 235 (243)
Q Consensus 232 l~~~ 235 (243)
+...
T Consensus 155 l~~~ 158 (693)
T PRK00007 155 LGAN 158 (693)
T ss_pred hCCC
Confidence 7664
No 113
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.65 E-value=1e-15 Score=134.76 Aligned_cols=147 Identities=21% Similarity=0.223 Sum_probs=104.5
Q ss_pred cCCCC--CCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeC---CcEEEEeCCCCCCCccchHHH
Q 026112 84 SSSFP--APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVK 158 (243)
Q Consensus 84 ~~~~~--~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~ 158 (243)
.+++| .++.++++++|+||+|||||+|.++... ..+.++++||+.....+.+ ..|+++||||+.+. +.+..
T Consensus 158 l~rlPsIDp~trTlllcG~PNVGKSSf~~~vtrad--vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~--plEdr 233 (620)
T KOG1490|consen 158 LSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRAD--DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDR--PEEDR 233 (620)
T ss_pred HhcCCCCCCCcCeEEEecCCCCCcHhhcccccccc--cccCCcccccchhhhhhhhhheeeeeecCCccccCc--chhhh
Confidence 44555 5788999999999999999999999884 7799999999988766554 36889999998763 22222
Q ss_pred HHHHHHHHHHHhcccCccEEEEEEeCCC--CCChhh-HHHHHHHHhc--CCcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 159 DAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~--~~~~~~-~~~~~~l~~~--~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
..++...-..+.+.. -+|+|++|.+. +.+... ..++..++.+ +.|+|+|+||+|.+.++++......+.+.+.
T Consensus 234 N~IEmqsITALAHLr--aaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~ 311 (620)
T KOG1490|consen 234 NIIEMQIITALAHLR--SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTII 311 (620)
T ss_pred hHHHHHHHHHHHHhh--hhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHH
Confidence 233322223333333 34889999654 444333 4566666654 7899999999999999888766666666666
Q ss_pred hCC
Q 026112 234 ANN 236 (243)
Q Consensus 234 ~~~ 236 (243)
+.+
T Consensus 312 ~~~ 314 (620)
T KOG1490|consen 312 DDG 314 (620)
T ss_pred hcc
Confidence 554
No 114
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.65 E-value=3.6e-15 Score=126.81 Aligned_cols=123 Identities=21% Similarity=0.243 Sum_probs=85.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE---EEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
+.++|+++|.+|+||||++|+|++. +...++...++|..... ...|..+.+|||||+.+... ..+.....+..
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~-~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~---~~e~~~~~ik~ 112 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGE-RIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGY---INDQAVNIIKR 112 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHH---HHHHHHHHHHH
Confidence 4679999999999999999999998 55566666655444322 22478899999999986421 22222334444
Q ss_pred HHhcccCccEEEEEEeCC-CCCChhhHHHHHHHHhc-----CCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTK-WGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~-----~~p~i~v~nK~D~~~~ 218 (243)
++.. ...|+++||.+.. ......+..+++.+... ..++++|+|++|..++
T Consensus 113 ~l~~-~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 113 FLLG-KTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred Hhhc-CCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 4433 3589999996533 24666767777766543 4689999999998854
No 115
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.65 E-value=2.5e-15 Score=120.25 Aligned_cols=112 Identities=21% Similarity=0.282 Sum_probs=71.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
..++|+++|.+|||||||+|++.+. ....+.+..+.+.. .....+..+.++||||... +......|+.
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~G~~~----------~~~~~~~~~~ 83 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKND-RLAQHQPTQHPTSE-ELAIGNIKFTTFDLGGHQQ----------ARRLWKDYFP 83 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcC-CCcccCCccccceE-EEEECCEEEEEEECCCCHH----------HHHHHHHHhC
Confidence 3479999999999999999999987 32333222222211 1112356789999999642 1223334443
Q ss_pred cccCccEEEEEEeCCCCC--ChhhHHHHHHHH---hcCCcEEEEeecCCCCC
Q 026112 171 TRVSLKRVCLLIDTKWGV--KPRDHELISLME---RSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~--~~~~~~~~~~l~---~~~~p~i~v~nK~D~~~ 217 (243)
.+|++++|+|++... ......+.+.+. ..+.|+++|+||+|+..
T Consensus 84 ---~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 84 ---EVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred ---CCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 399999999987641 112223333332 24789999999999863
No 116
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.64 E-value=1.4e-15 Score=141.39 Aligned_cols=132 Identities=26% Similarity=0.257 Sum_probs=88.2
Q ss_pred cCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCc
Q 026112 99 GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSL 175 (243)
Q Consensus 99 G~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (243)
|.||+|||||+|+|++.. ..+++.+|+|.+..... .+..+.++||||..+-...... +.....++. ...+
T Consensus 1 G~pNvGKSSL~N~Ltg~~--~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~----e~v~~~~l~-~~~a 73 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN--QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLE----EEVARDYLL-NEKP 73 (591)
T ss_pred CCCCCCHHHHHHHHhCCC--CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchH----HHHHHHHHh-hcCC
Confidence 899999999999999984 57899999999875432 3667999999997542211110 122233332 2358
Q ss_pred cEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 176 KRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 176 d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
|++++|+|+++. +....+...+.+.+.|+++|+||+|+..........+.+.+.+ +.+++|+
T Consensus 74 DvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l---g~pvv~t 135 (591)
T TIGR00437 74 DLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERL---GVPVVPT 135 (591)
T ss_pred CEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHc---CCCEEEE
Confidence 999999998863 3344555556667899999999999865433333334444443 3455554
No 117
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.64 E-value=7e-15 Score=136.41 Aligned_cols=110 Identities=25% Similarity=0.411 Sum_probs=79.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCC-CceEEEEEEEe---------C------------CcEEEEeCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINFFKL---------G------------TKLCLVDLPGY 148 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~-gtT~~~~~~~~---------~------------~~~~liDTpG~ 148 (243)
+.|.|+++|++|+|||||+|+|.+.. .++..+ +.|++...... + ..+.+|||||+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~---v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTA---VAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc---cccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 56899999999999999999998762 233333 34444311110 0 13789999997
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
.. +..+..... ..+|++++|+|++.++.....+.+..+...++|+++++||+|+.
T Consensus 82 e~----------f~~~~~~~~---~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 82 EA----------FTNLRKRGG---ALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred HH----------HHHHHHHhH---hhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 43 122222222 33899999999998887888888888888899999999999986
No 118
>PLN03118 Rab family protein; Provisional
Probab=99.64 E-value=4.8e-15 Score=121.11 Aligned_cols=114 Identities=21% Similarity=0.176 Sum_probs=73.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+++|++. ......+..+.+..+..... ...+.+|||||... +..+...
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~ 81 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISS-SVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER----------FRTLTSS 81 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC-CCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchh----------hHHHHHH
Confidence 3579999999999999999999987 33334444443333322222 24688999999643 2223334
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|.+...+.... .+...+.. .+.|+++|+||+|+...
T Consensus 82 ~~~~---~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 135 (211)
T PLN03118 82 YYRN---AQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE 135 (211)
T ss_pred HHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 4433 8999999998764222222 13233332 25789999999999754
No 119
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.64 E-value=5.7e-15 Score=115.63 Aligned_cols=114 Identities=21% Similarity=0.248 Sum_probs=71.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||++++.+...........++......... + ..+.+|||||... +..+...+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~~ 72 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQER----------FRTITQSY 72 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHH----------HHHHHHHH
Confidence 369999999999999999999876211111122222122222222 2 3688999999421 22333334
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
+. .+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...
T Consensus 73 ~~---~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 73 YR---SANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred hc---cCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 33 3899999999876532222 345554543 36899999999999754
No 120
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.64 E-value=1.7e-15 Score=118.33 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=68.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||+|++++.. ....+.+++.+.. .... ...+.+|||||... +..+...
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~----------~~~~~~~ 67 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGH---FVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE----------FSAMRDQ 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCc---CCcccCCchhhhEEEEEEECCEEEEEEEEECCCccc----------chHHHHH
Confidence 379999999999999999999873 2223333333221 1111 24677999999643 1222333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|+....+... ..+...+. ....|+++|+||+|+...
T Consensus 68 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~ 120 (164)
T smart00173 68 YMRT---GEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESE 120 (164)
T ss_pred HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 3333 899999999875422111 22222322 236899999999999753
No 121
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.64 E-value=1.4e-15 Score=118.88 Aligned_cols=110 Identities=14% Similarity=0.100 Sum_probs=70.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
++|+++|.+|||||||+++++... ....+++|+.+... ... ...+.+|||||... +..+...
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI---FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ----------FTAMRDL 68 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC---CCcccCCcchheEEEEEEECCEEEEEEEEECCCccc----------chhHHHH
Confidence 589999999999999999998652 23344444443211 111 33567999999643 2233334
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|.+...+... ..++..+. ..+.|+++|+||+|+...
T Consensus 69 ~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (164)
T cd04175 69 YMKN---GQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 121 (164)
T ss_pred HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhc
Confidence 4443 899999999765422221 23333332 235899999999999753
No 122
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.64 E-value=5.1e-15 Score=115.27 Aligned_cols=111 Identities=20% Similarity=0.213 Sum_probs=70.5
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|++|+|||||++++++.. ......+..+.+. ..... + ..+.+|||||... +......
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~ 68 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGK--FSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER----------FRSITSS 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH----------HHHHHHH
Confidence 379999999999999999999873 1222222222222 12222 2 3678999999521 2233344
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
++. .+|++++|+|++++.+... ..++..+.. .+.|+++|+||+|+...
T Consensus 69 ~~~---~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~ 120 (164)
T smart00175 69 YYR---GAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQ 120 (164)
T ss_pred HhC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccc
Confidence 443 3899999999876432222 224444333 36899999999998753
No 123
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.64 E-value=4.1e-15 Score=141.00 Aligned_cols=132 Identities=21% Similarity=0.248 Sum_probs=95.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc----ccccC------------CCCceEEEE---EEEeCCcEEEEeCCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV----VRTSD------------KPGLTQTIN---FFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~----~~vs~------------~~gtT~~~~---~~~~~~~~~liDTpG~~~~ 151 (243)
...+|+++|.+|+|||||+|+|+..... ..+.+ ..|+|.+.. +...+..+.+|||||+.+.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 4569999999999999999999754211 11111 356676643 3334788999999998641
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHH
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 231 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~ 231 (243)
. .....++. .+|++++|+|+..+....+..++..+...++|+++|+||+|+.... .....+.+++.
T Consensus 89 ~----------~~~~~~l~---~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~-~~~~~~~i~~~ 154 (689)
T TIGR00484 89 T----------VEVERSLR---VLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGAN-FLRVVNQIKQR 154 (689)
T ss_pred h----------HHHHHHHH---HhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHH
Confidence 1 11222222 2899999999998888888888888888899999999999998643 55666777777
Q ss_pred HhhCC
Q 026112 232 LKANN 236 (243)
Q Consensus 232 l~~~~ 236 (243)
+....
T Consensus 155 l~~~~ 159 (689)
T TIGR00484 155 LGANA 159 (689)
T ss_pred hCCCc
Confidence 66543
No 124
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.64 E-value=3.4e-15 Score=117.27 Aligned_cols=110 Identities=17% Similarity=0.173 Sum_probs=71.2
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCc----eEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL----TQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gt----T~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
+|+++|.+|||||||+|++.+... . ..++.+ +........+..+.+|||||.... ......++
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~ 68 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF-P--ENVPRVLPEITIPADVTPERVPTTIVDTSSRPQD----------RANLAAEI 68 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-C--ccCCCcccceEeeeeecCCeEEEEEEeCCCchhh----------hHHHhhhc
Confidence 799999999999999999998732 1 223322 222222223457889999996431 11122222
Q ss_pred hcccCccEEEEEEeCCCCCChhh--HHHHHHHHh--cCCcEEEEeecCCCCChH
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~D~~~~~ 219 (243)
..+|++++|+|...+.+... ..++..+.. .+.|+++|+||+|+.+..
T Consensus 69 ---~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 69 ---RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGS 119 (166)
T ss_pred ---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccc
Confidence 34899999999876533333 234555543 368999999999997654
No 125
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.64 E-value=3.4e-15 Score=126.42 Aligned_cols=127 Identities=20% Similarity=0.337 Sum_probs=85.3
Q ss_pred EEEEecCCCCchhHHHHHHhcccccc-cccC-CCC--------------ceEEE---EEEEeCCcEEEEeCCCCCCCccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVV-RTSD-KPG--------------LTQTI---NFFKLGTKLCLVDLPGYGFAYAK 154 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~-~vs~-~~g--------------tT~~~---~~~~~~~~~~liDTpG~~~~~~~ 154 (243)
+|+++|.+|+|||||+|+|+...... .... ..| .|... .+...+..+.+|||||+.+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~---- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD---- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH----
Confidence 48999999999999999998642110 0000 011 12111 2223467899999999742
Q ss_pred hHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
+......++. .+|++++|+|+..+.......+++.+...++|+++|+||+|+... ......+.+++.++.
T Consensus 77 ------f~~~~~~~l~---~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~-~~~~~~~~l~~~~~~ 146 (268)
T cd04170 77 ------FVGETRAALR---AADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA-DFDKTLAALQEAFGR 146 (268)
T ss_pred ------HHHHHHHHHH---HCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC-CHHHHHHHHHHHhCC
Confidence 1111222222 389999999998877777677777888889999999999999865 445566677776654
No 126
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.64 E-value=2e-15 Score=141.96 Aligned_cols=139 Identities=17% Similarity=0.159 Sum_probs=90.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccc----------cCCCC----------------------ceEEEEEEE---
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT----------SDKPG----------------------LTQTINFFK--- 135 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~v----------s~~~g----------------------tT~~~~~~~--- 135 (243)
...+|+++|.+|+|||||+|+|+.... ... +...| +|.+..+..
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~-~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSK-MIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 456899999999999999999997632 211 11233 444443222
Q ss_pred eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCC-cEEEEeecCC
Q 026112 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTD 214 (243)
Q Consensus 136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-p~i~v~nK~D 214 (243)
.+..+.++||||+.+ +..........+|++++|+|+..++..++.+.+..+...+. ++++|+||+|
T Consensus 102 ~~~~~~liDtPG~~~-------------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D 168 (632)
T PRK05506 102 PKRKFIVADTPGHEQ-------------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMD 168 (632)
T ss_pred CCceEEEEECCChHH-------------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecc
Confidence 256799999999632 22222223445999999999998887777777777777764 6889999999
Q ss_pred CCC--hHHHHHHHHHHHHHHhhCC---CccccCC
Q 026112 215 TVF--PIDVARRAMQIEESLKANN---SLVQPVV 243 (243)
Q Consensus 215 ~~~--~~~~~~~~~~l~~~l~~~~---~~~~pi~ 243 (243)
+.. ..........+.+.+...+ .++.|||
T Consensus 169 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiS 202 (632)
T PRK05506 169 LVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPIS 202 (632)
T ss_pred cccchhHHHHHHHHHHHHHHHHcCCCCccEEEEe
Confidence 985 2333444455554443333 2355654
No 127
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.64 E-value=3e-15 Score=116.71 Aligned_cols=112 Identities=18% Similarity=0.172 Sum_probs=70.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceE---EEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~---~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+|+++|++|+|||||+|++++........+..+.+. .+.+...+..+.+|||||... +......++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~ 71 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER----------YRSLAPMYY 71 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHH----------HHHHHHHHh
Confidence 5899999999999999999999842121333333322 222222245788999999521 122222333
Q ss_pred hcccCccEEEEEEeCCCCCCh-hhHHHHHHHHhc---CCcEEEEeecCCCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKP-RDHELISLMERS---QTKYQVVLTKTDTVF 217 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~-~~~~~~~~l~~~---~~p~i~v~nK~D~~~ 217 (243)
+ .+|++++|+|++...+. ....++..+... ..|+++|+||+|+..
T Consensus 72 ~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 120 (163)
T cd01860 72 R---GAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES 120 (163)
T ss_pred c---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 3 38999999998754211 123444444433 478999999999874
No 128
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.64 E-value=4.8e-15 Score=117.64 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=69.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE---EEEEE----------eCCcEEEEeCCCCCCCccchHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFK----------LGTKLCLVDLPGYGFAYAKEEVK 158 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~---~~~~~----------~~~~~~liDTpG~~~~~~~~~~~ 158 (243)
..+|+++|.+|+|||||++++.+........+..+.... +.+.. ....+.+|||||..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------- 74 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE--------- 74 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH---------
Confidence 368999999999999999999886321111111111111 11110 12468899999942
Q ss_pred HHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
.+..+...+++ .+|++++|+|.+...+..+ ..++..+.. .+.|+++|+||+|+...
T Consensus 75 -~~~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~ 135 (180)
T cd04127 75 -RFRSLTTAFFR---DAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQ 135 (180)
T ss_pred -HHHHHHHHHhC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhc
Confidence 12334444444 3899999999876422222 234444433 25789999999999754
No 129
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.64 E-value=3e-15 Score=114.76 Aligned_cols=118 Identities=25% Similarity=0.226 Sum_probs=71.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE--Ee-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~--~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
++|+++|.+|+|||||+|+|++.. ......+++|.+.... .. + ..+.+|||||..+. ...+......
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~~~ 73 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK--FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY------RAIRRLYYRA 73 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC--CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc------hHHHHHHHhh
Confidence 589999999999999999999983 5566677777776542 22 3 56889999995431 1112222222
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
.......+|++++|.+...........+...+.. +.|+++|+||+|+....
T Consensus 74 ~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~ 124 (161)
T TIGR00231 74 VESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK 124 (161)
T ss_pred hhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch
Confidence 2222222344444444332221222222332222 78999999999998654
No 130
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.64 E-value=2.9e-15 Score=117.04 Aligned_cols=103 Identities=22% Similarity=0.295 Sum_probs=65.3
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (243)
+|+++|.+|+|||||+|+|.+... .. ..|..+.+.. . .+|||||+.... .. .+..+. ....
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~---~~---~~~~~v~~~~--~--~~iDtpG~~~~~--~~---~~~~~~----~~~~ 63 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT---LA---RKTQAVEFND--K--GDIDTPGEYFSH--PR---WYHALI----TTLQ 63 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc---cC---ccceEEEECC--C--CcccCCccccCC--HH---HHHHHH----HHHh
Confidence 799999999999999999998731 11 2333333321 1 279999974321 11 111222 1233
Q ss_pred CccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 174 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 174 ~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.+|++++|+|++.+.+.....+.+. ..+.|+++++||+|+..
T Consensus 64 ~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~ 105 (158)
T PRK15467 64 DVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPD 105 (158)
T ss_pred cCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCc
Confidence 4999999999886543333333322 23579999999999864
No 131
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.64 E-value=2.7e-15 Score=117.19 Aligned_cols=111 Identities=17% Similarity=0.166 Sum_probs=68.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (243)
.+|+++|.+|+|||||++++..... ....+..|.... ........+.+|||||... +..+...++..
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~-~~~~pt~g~~~~-~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~~~- 67 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEYKNISFTVWDVGGQDK----------IRPLWRHYFQN- 67 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-cccCCCCCcceE-EEEECCEEEEEEECCCCHh----------HHHHHHHHhcC-
Confidence 3799999999999999999975522 211111121111 1112356789999999632 12233344443
Q ss_pred cCccEEEEEEeCCCCC--ChhhHHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 173 VSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~--~~~~~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
+|++++|+|++... ......+.+.+.. ...|+++|+||+|+...
T Consensus 68 --ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 116 (159)
T cd04150 68 --TQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA 116 (159)
T ss_pred --CCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC
Confidence 89999999987532 1122223333322 24899999999999643
No 132
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.63 E-value=7e-15 Score=115.33 Aligned_cols=111 Identities=16% Similarity=0.175 Sum_probs=70.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceE-EE--EEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~-~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.+|+++|.+|+|||||++++.+.. ....++.|+. +. ..... ...+.+|||||... +.....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~ 69 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK---FMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER----------FRAVTR 69 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC---CCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHH
Confidence 589999999999999999999873 2233333321 11 11122 24678999999521 223334
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChH
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
.+++ .+|++++|+|.+.+.+... ..++..+.. .+.|+++|.||+|+....
T Consensus 70 ~~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~ 123 (166)
T cd04122 70 SYYR---GAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQR 123 (166)
T ss_pred HHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 4443 3899999999886422222 233333322 257899999999997543
No 133
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.63 E-value=4.8e-15 Score=116.70 Aligned_cols=111 Identities=18% Similarity=0.283 Sum_probs=72.8
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (243)
.|+++|.+|||||||++++.+. ......+..|.+.. .+...+..+.++||||... +..+...|+..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~-~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~~-- 66 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT-KLRLDKYEVCIFDLGGGAN----------FRGIWVNYYAE-- 66 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE-EEEECCEEEEEEECCCcHH----------HHHHHHHHHcC--
Confidence 4789999999999999999986 32334444444432 2222366799999999532 12233344433
Q ss_pred CccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCChH
Q 026112 174 SLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 174 ~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~~ 219 (243)
+|++++|+|++....... ..++..+.. .+.|+++|+||+|+....
T Consensus 67 -a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 67 -AHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred -CCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 899999999876422221 233333322 368999999999997654
No 134
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.63 E-value=3.1e-15 Score=116.44 Aligned_cols=112 Identities=21% Similarity=0.205 Sum_probs=71.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+|+++|++|+|||||+|+|++........+..+.+........ ...+.+|||||... +......++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~ 70 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQER----------FRTLTSSYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchh----------hhhhhHHHh
Confidence 37999999999999999999987322223444444433332222 24688999999532 122222333
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~ 217 (243)
+.+|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 71 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 71 ---RGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN 120 (161)
T ss_pred ---CCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc
Confidence 34899999999875422222 223333332 3688999999999973
No 135
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.63 E-value=7.7e-15 Score=132.06 Aligned_cols=134 Identities=20% Similarity=0.345 Sum_probs=88.6
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccc-----------------------------cccCCCCceEEEEEEEe---C
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------------RTSDKPGLTQTINFFKL---G 137 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~-----------------------------~vs~~~gtT~~~~~~~~---~ 137 (243)
....+|+++|..++|||||+++|+...... ......|+|.+...... +
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 345789999999999999999998532100 00124478888755442 5
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC---CChhhHHHHHHHHhcC-CcEEEEeecC
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG---VKPRDHELISLMERSQ-TKYQVVLTKT 213 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~---~~~~~~~~~~~l~~~~-~p~i~v~nK~ 213 (243)
..+.+|||||+. .+...+......+|++++|+|++.+ ......+.+..+...+ .|+++|+||+
T Consensus 85 ~~i~iiDtpGh~-------------~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~ 151 (426)
T TIGR00483 85 YEVTIVDCPGHR-------------DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKM 151 (426)
T ss_pred eEEEEEECCCHH-------------HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEECh
Confidence 689999999963 1333333334559999999999876 3333444444455555 4689999999
Q ss_pred CCCC--hHHHHHHHHHHHHHHhhCC
Q 026112 214 DTVF--PIDVARRAMQIEESLKANN 236 (243)
Q Consensus 214 D~~~--~~~~~~~~~~l~~~l~~~~ 236 (243)
|+.. ..........+++.+...+
T Consensus 152 Dl~~~~~~~~~~~~~ei~~~~~~~g 176 (426)
T TIGR00483 152 DSVNYDEEEFEAIKKEVSNLIKKVG 176 (426)
T ss_pred hccCccHHHHHHHHHHHHHHHHHcC
Confidence 9974 3344455566666665544
No 136
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.63 E-value=3.1e-15 Score=116.55 Aligned_cols=113 Identities=16% Similarity=0.141 Sum_probs=70.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+|+++|.+|+|||||+++|++........+..+.......... ...+.+|||||... +......++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~~~~ 70 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER----------FRSVTRSYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHH----------HHHhHHHHh
Confidence 37999999999999999999987321212222222122111222 24678999999632 222333333
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHH---hcCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~p~i~v~nK~D~~~~ 218 (243)
. .+|++++|+|.+...+... ..++..+. ..+.|+++|+||+|+...
T Consensus 71 ~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 120 (161)
T cd04113 71 R---GAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQ 120 (161)
T ss_pred c---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchh
Confidence 3 3899999999886433222 23333333 236899999999999753
No 137
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.63 E-value=5.2e-15 Score=119.94 Aligned_cols=110 Identities=13% Similarity=0.124 Sum_probs=68.5
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
++|+++|.+|+|||||++++++... . ....+....+. ..... ...+.+|||||... +..+..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~-~-~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~----------~~~~~~ 68 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIF-S-QHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER----------FGGMTR 68 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-C-CCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchh----------hhhhHH
Confidence 4799999999999999999998631 1 11112112222 12222 23578999999632 233344
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH-------hcCCcEEEEeecCCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-------RSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~-------~~~~p~i~v~nK~D~~~ 217 (243)
.++.. +|++++|+|.+...+... ..++..+. ...+|+++|+||+|+..
T Consensus 69 ~~~~~---a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~ 124 (201)
T cd04107 69 VYYRG---AVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK 124 (201)
T ss_pred HHhCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc
Confidence 44443 899999999876422222 12333332 13579999999999974
No 138
>PRK12739 elongation factor G; Reviewed
Probab=99.63 E-value=3.6e-15 Score=141.38 Aligned_cols=131 Identities=21% Similarity=0.255 Sum_probs=95.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccc----ccccc------------CCCCceEEEE---EEEeCCcEEEEeCCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWG----VVRTS------------DKPGLTQTIN---FFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~----~~~vs------------~~~gtT~~~~---~~~~~~~~~liDTpG~~~~ 151 (243)
...+|+++|++|+|||||+|+|+.... ...+. ...|+|.+.. +...+..+.++||||+.+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~- 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD- 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH-
Confidence 456899999999999999999975321 11122 2456676653 333477899999999742
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHH
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 231 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~ 231 (243)
+..........+|++++|+|+..++...+..++..+...++|+++++||+|+.... .....+.+++.
T Consensus 86 ------------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~-~~~~~~~i~~~ 152 (691)
T PRK12739 86 ------------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGAD-FFRSVEQIKDR 152 (691)
T ss_pred ------------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHH
Confidence 11112222233899999999999988888899999988899999999999998643 55667777777
Q ss_pred HhhC
Q 026112 232 LKAN 235 (243)
Q Consensus 232 l~~~ 235 (243)
+...
T Consensus 153 l~~~ 156 (691)
T PRK12739 153 LGAN 156 (691)
T ss_pred hCCC
Confidence 7653
No 139
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.63 E-value=5.3e-15 Score=116.16 Aligned_cols=111 Identities=15% Similarity=0.225 Sum_probs=69.2
Q ss_pred EEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccC
Q 026112 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS 174 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (243)
|+++|.+|+|||||++++.+........+..|... ......+..+.+|||||... . ..+...++..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~-~~i~~~~~~l~i~Dt~G~~~------~----~~~~~~~~~~--- 67 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS-VAIPTQDAIMELLEIGGSQN------L----RKYWKRYLSG--- 67 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce-EEEeeCCeEEEEEECCCCcc------h----hHHHHHHHhh---
Confidence 78999999999999999998732121222222211 22223356789999999643 1 1222333333
Q ss_pred ccEEEEEEeCCCCCChhh-HHHHHHH-Hh-cCCcEEEEeecCCCCChH
Q 026112 175 LKRVCLLIDTKWGVKPRD-HELISLM-ER-SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 175 ~d~v~~vvd~~~~~~~~~-~~~~~~l-~~-~~~p~i~v~nK~D~~~~~ 219 (243)
+|++++|+|++....... ..++..+ .. .++|+++|.||+|+....
T Consensus 68 ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~ 115 (164)
T cd04162 68 SQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAAR 115 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCC
Confidence 899999999876422111 2222323 22 478999999999987654
No 140
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.63 E-value=3.5e-15 Score=119.21 Aligned_cols=111 Identities=18% Similarity=0.170 Sum_probs=68.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE----eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.+|+++|.+|+|||||+++++.... ....+..|.+....... .+..+.+|||||... +..+...+
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~~ 72 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEF-VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK----------LRPLWKSY 72 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCc-CCcCCccccceeEEEeeccCCCceEEEEEECCCcHh----------HHHHHHHH
Confidence 5899999999999999999988632 21112122222221111 235789999999532 12223333
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHH----HHHHhcCCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELI----SLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~----~~l~~~~~p~i~v~nK~D~~~ 217 (243)
+. .+|++++|+|++...+... ..++ ......+.|+++|+||+|+..
T Consensus 73 ~~---~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 73 TR---CTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred hc---cCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 33 3999999999876421111 1122 222334689999999999864
No 141
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.63 E-value=5.4e-15 Score=132.18 Aligned_cols=140 Identities=23% Similarity=0.323 Sum_probs=90.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-ccccccCCCCceEEEEEEE-----------------------------eCCcE
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK-----------------------------LGTKL 140 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-~~~~vs~~~gtT~~~~~~~-----------------------------~~~~~ 140 (243)
...+|+++|.+++|||||+++|++.. +........|.|.++.+.. .+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 35689999999999999999998641 0000111223343332110 13568
Q ss_pred EEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC-ChhhHHHHHHHHhcCC-cEEEEeecCCCCCh
Q 026112 141 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFP 218 (243)
Q Consensus 141 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~-p~i~v~nK~D~~~~ 218 (243)
.++||||+. .+...+......+|++++|+|++++. ..+..+.+..+...+. |+++|+||+|+...
T Consensus 83 ~liDtPGh~-------------~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 83 SFVDAPGHE-------------TLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK 149 (406)
T ss_pred EEEECCCHH-------------HHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH
Confidence 999999962 22333333344589999999999875 5566666777776665 68999999999876
Q ss_pred HHHHHHHHHHHHHHhhC---CCccccCC
Q 026112 219 IDVARRAMQIEESLKAN---NSLVQPVV 243 (243)
Q Consensus 219 ~~~~~~~~~l~~~l~~~---~~~~~pi~ 243 (243)
.......+.+.+.+... +.+++|+|
T Consensus 150 ~~~~~~~~~i~~~l~~~~~~~~~ii~vS 177 (406)
T TIGR03680 150 EKALENYEEIKEFVKGTVAENAPIIPVS 177 (406)
T ss_pred HHHHHHHHHHHhhhhhcccCCCeEEEEE
Confidence 65555555666555432 34555653
No 142
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.62 E-value=9.3e-15 Score=132.75 Aligned_cols=140 Identities=17% Similarity=0.158 Sum_probs=90.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccccc-------------cc------------------CCCCceEEEEEEE---e
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR-------------TS------------------DKPGLTQTINFFK---L 136 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~-------------vs------------------~~~gtT~~~~~~~---~ 136 (243)
..++|+++|.+++|||||+++|+...+... .+ ...|.|.++.+.. .
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 558999999999999999999986532110 00 0124555654332 3
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCC-cEEEEeecCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDT 215 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-p~i~v~nK~D~ 215 (243)
+..+.++||||+.. +..........+|++++|+|+..++...+.+.+..+...+. |+++|+||+|+
T Consensus 106 ~~~i~~iDTPGh~~-------------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~ 172 (474)
T PRK05124 106 KRKFIIADTPGHEQ-------------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDL 172 (474)
T ss_pred CcEEEEEECCCcHH-------------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecc
Confidence 56899999999631 22222222345999999999998877766666666666664 68999999999
Q ss_pred CChH--HHHHHHHHHHHHHhhC----CCccccCC
Q 026112 216 VFPI--DVARRAMQIEESLKAN----NSLVQPVV 243 (243)
Q Consensus 216 ~~~~--~~~~~~~~l~~~l~~~----~~~~~pi~ 243 (243)
.... .+....+.+...+... ...+.|||
T Consensus 173 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvS 206 (474)
T PRK05124 173 VDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLS 206 (474)
T ss_pred ccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEE
Confidence 8432 2344445555444332 24455654
No 143
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.62 E-value=7.9e-15 Score=115.19 Aligned_cols=110 Identities=15% Similarity=0.129 Sum_probs=66.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|++|+|||||+|++++.. .. ....+..+.+. ..... ...+.+|||||... +..+...
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~-~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~ 68 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKK-FS-NQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQER----------FQSLGVA 68 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CC-cCcCCccceEEEEEEEEECCEEEEEEEEeCCChHH----------HHhHHHH
Confidence 379999999999999999999873 11 11111112222 11112 23467999999532 1223333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHH-Hh------cCCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER------SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~~------~~~p~i~v~nK~D~~~ 217 (243)
+++ .+|++++++|+..+.+... ..+.+.+ .. .++|+++|+||+|+..
T Consensus 69 ~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 69 FYR---GADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred Hhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 333 3899999999876422111 1222222 21 2689999999999984
No 144
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.62 E-value=4.4e-15 Score=115.58 Aligned_cols=109 Identities=14% Similarity=0.075 Sum_probs=69.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
++|+++|++|+|||||+++++... .+..+.+++.+... .. ....+.+|||||... +......
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~ 67 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQED----------YAAIRDN 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC---CccccCCcchhhEEEEEEECCEEEEEEEEECCChhh----------hhHHHHH
Confidence 379999999999999999999863 23344444433211 11 134688999999643 1223333
Q ss_pred HHhcccCccEEEEEEeCCCCCChh-hHHHHH-HHH---hcCCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELIS-LME---RSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~-~l~---~~~~p~i~v~nK~D~~~ 217 (243)
+++. ++++++|+|...+-+.. ...+.. +.. ..+.|+++|+||+|+..
T Consensus 68 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 68 YHRS---GEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred Hhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 3333 79999999976532111 112222 222 24799999999999976
No 145
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.62 E-value=8.7e-15 Score=114.72 Aligned_cols=113 Identities=14% Similarity=0.049 Sum_probs=69.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccC-CCCceEEEEEE-EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~-~~gtT~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
.+|+++|.+|+|||||++++++........+ ...+.+..... .....+.+|||||.... ..+...++.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~~ 71 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQF----------PAMQRLSIS 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcc----------hHHHHHHhh
Confidence 5899999999999999999998731111111 11111111111 12346889999997431 122222332
Q ss_pred cccCccEEEEEEeCCCCCChhh-HHHHHHHHh------cCCcEEEEeecCCCCCh
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~------~~~p~i~v~nK~D~~~~ 218 (243)
.+|++++|+|.+...+... ..+++.+.. .+.|+++|+||+|+...
T Consensus 72 ---~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~ 123 (165)
T cd04140 72 ---KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK 123 (165)
T ss_pred ---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc
Confidence 3899999999876533322 334444433 35899999999999753
No 146
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.62 E-value=1.2e-14 Score=117.74 Aligned_cols=118 Identities=16% Similarity=0.098 Sum_probs=70.1
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEE-eC--CcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|.+|||||||++++++... .. ...|.++.++. ... .+ ..+.+|||||....... ....|......
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f-~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~--~~~e~~~~~~~- 76 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF-PE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT--AGQEWMDPRFR- 76 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC-Cc-ccCCccccccceeEEEECCEEEEEEEEeCCCcccCCcc--chhHHHHHHHh-
Confidence 799999999999999999998732 21 12232222321 111 23 45779999997542111 11112111111
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHH------hcCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME------RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~------~~~~p~i~v~nK~D~~~~ 218 (243)
....+|++++|+|++.+.+... ..+.+.+. ..++|+++|+||+|+...
T Consensus 77 --~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~ 131 (198)
T cd04142 77 --GLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH 131 (198)
T ss_pred --hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc
Confidence 2245999999999876432222 23333332 235899999999999653
No 147
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.62 E-value=2.8e-14 Score=117.85 Aligned_cols=125 Identities=18% Similarity=0.271 Sum_probs=86.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
....|+++|.+|+|||||+|.|++......++...|+. .+ ....+..+.++||||.. . .+..
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-~i-~~~~~~~i~~vDtPg~~--------~----~~l~---- 99 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-TV-VTGKKRRLTFIECPNDI--------N----AMID---- 99 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-EE-EecCCceEEEEeCCchH--------H----HHHH----
Confidence 45679999999999999999999863323344445532 11 11246789999999842 1 1111
Q ss_pred cccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEE-EEeecCCCCChH-HHHHHHHHHHHHHh
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPI-DVARRAMQIEESLK 233 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i-~v~nK~D~~~~~-~~~~~~~~l~~~l~ 233 (243)
....+|++++|+|+..++...+..++..+...+.|.+ +|+||+|+..+. ........+++.+.
T Consensus 100 ~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~ 164 (225)
T cd01882 100 IAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFW 164 (225)
T ss_pred HHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHH
Confidence 1233899999999998888888888888888888854 599999998543 34445556655443
No 148
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.62 E-value=9.7e-15 Score=124.02 Aligned_cols=147 Identities=23% Similarity=0.368 Sum_probs=93.9
Q ss_pred CEEEEecCCCCchhHHHHHHhccccccccc-CCC------CceEEEEEE----E---eCCcEEEEeCCCCCCCccchHH-
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKP------GLTQTINFF----K---LGTKLCLVDLPGYGFAYAKEEV- 157 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs-~~~------gtT~~~~~~----~---~~~~~~liDTpG~~~~~~~~~~- 157 (243)
++|+++|.+|+|||||+|.|++.. ..... ..+ ..|..+... . ....+.++|||||++.......
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSD-IISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS----------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcc-cccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 689999999999999999999973 22221 111 011112111 1 1346889999999976433221
Q ss_pred ---HHHHHHHHHHHHhcc----------cCccEEEEEEeCC-CCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHH
Q 026112 158 ---KDAWEELVKEYVSTR----------VSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 223 (243)
Q Consensus 158 ---~~~~~~~~~~~~~~~----------~~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~ 223 (243)
...+..-...|+... ...|+++|+++++ +++.+.|.+.++.|... +++|-|+.|+|.+.+.++..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vNvIPvIaKaD~lt~~el~~ 162 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VNVIPVIAKADTLTPEELQA 162 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SEEEEEESTGGGS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-ccEEeEEecccccCHHHHHH
Confidence 122222222333211 1368899999964 57889999988888774 89999999999999999999
Q ss_pred HHHHHHHHHhhCCCcccc
Q 026112 224 RAMQIEESLKANNSLVQP 241 (243)
Q Consensus 224 ~~~~l~~~l~~~~~~~~p 241 (243)
....+++.++.++..+|.
T Consensus 163 ~k~~i~~~l~~~~I~~f~ 180 (281)
T PF00735_consen 163 FKQRIREDLEENNIKIFD 180 (281)
T ss_dssp HHHHHHHHHHHTT--S--
T ss_pred HHHHHHHHHHHcCceeec
Confidence 999999999999887774
No 149
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.62 E-value=7.6e-15 Score=117.99 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=70.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE---EEEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~---~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.+|+++|.+|+|||||++++++.. ...+.+.+|+.. ...... + ..+.+|||||... +..+..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~ 68 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHR--FLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSER----------YEAMSR 68 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--cCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchh----------hhhhhH
Confidence 379999999999999999999873 222334433322 122222 2 3466999999632 122222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc--CCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~p~i~v~nK~D~~~~ 218 (243)
.++. .+|++++|+|.+...+... ..+++.+... +.|+++|+||+|+...
T Consensus 69 ~~~~---~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 120 (193)
T cd04118 69 IYYR---GAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQ 120 (193)
T ss_pred hhcC---CCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccccc
Confidence 3332 3899999999876422221 3455555443 6899999999998653
No 150
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.62 E-value=1.1e-14 Score=120.77 Aligned_cols=86 Identities=23% Similarity=0.222 Sum_probs=61.7
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
+|+++|.+|+|||||+|+|++.. ..++.++++|.++... ..+..+.++||||+.+..... ..+....+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~--~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~------~~~~~~~l~ 73 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK--SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG------KGRGRQVIA 73 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccc------hhHHHHHHH
Confidence 68999999999999999999984 5578889999776543 246789999999975422111 012222233
Q ss_pred cccCccEEEEEEeCCCC
Q 026112 171 TRVSLKRVCLLIDTKWG 187 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~ 187 (243)
..+.+|++++|+|++..
T Consensus 74 ~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 74 VARTADLILMVLDATKP 90 (233)
T ss_pred hhccCCEEEEEecCCcc
Confidence 34559999999997643
No 151
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.61 E-value=8.3e-15 Score=112.84 Aligned_cols=110 Identities=19% Similarity=0.224 Sum_probs=68.0
Q ss_pred EEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE-EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc
Q 026112 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (243)
|+++|++|||||||+|+|.+... .....+.+..+.... ..+..+.++||||... +......++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~~~-- 67 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF--SEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPR----------FRSMWERYCRG-- 67 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC--CcCccCCCCcceEEEEECCEEEEEEECCCCHh----------HHHHHHHHHhc--
Confidence 78999999999999999999742 122222222222111 2245689999999632 12233334333
Q ss_pred CccEEEEEEeCCCCCChh-h-HHHHHHHH---hcCCcEEEEeecCCCCChH
Q 026112 174 SLKRVCLLIDTKWGVKPR-D-HELISLME---RSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 174 ~~d~v~~vvd~~~~~~~~-~-~~~~~~l~---~~~~p~i~v~nK~D~~~~~ 219 (243)
+|++++|+|++...... . ..+...+. ..+.|+++|+||+|+....
T Consensus 68 -~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 117 (159)
T cd04159 68 -VNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL 117 (159)
T ss_pred -CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc
Confidence 89999999987531111 1 12222222 1368999999999987653
No 152
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.61 E-value=1.6e-14 Score=113.85 Aligned_cols=116 Identities=21% Similarity=0.180 Sum_probs=70.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
..+|+++|++|+|||||++++++........+..+.......... ...+.+|||||... . ...+...+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~---~~~~~~~~ 72 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER------F---RKSMVQHY 72 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHH------H---HHhhHHHh
Confidence 368999999999999999999886311111111111111111111 24688999999532 1 01223333
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCChH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~~ 219 (243)
+. .+|++++|+|.+.+.+... ..+++.+.. ...|+++|+||+|+....
T Consensus 73 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 125 (170)
T cd04115 73 YR---NVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQI 125 (170)
T ss_pred hc---CCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhc
Confidence 33 3899999999876533322 244444433 258999999999987543
No 153
>PTZ00369 Ras-like protein; Provisional
Probab=99.61 E-value=7.1e-15 Score=118.02 Aligned_cols=114 Identities=12% Similarity=0.044 Sum_probs=69.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.++|+++|.+|+|||||++++.+........+..+.+... .+......+.+|||||..+ +..+...|+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~l~~~~~ 74 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEE----------YSAMRDQYM 74 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCcc----------chhhHHHHh
Confidence 4799999999999999999999863211111211211111 1111133577899999643 222333444
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
.. +|++++|+|+++..+... ..+...+.. .+.|+++|.||+|+...
T Consensus 75 ~~---~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~ 125 (189)
T PTZ00369 75 RT---GQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSE 125 (189)
T ss_pred hc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 43 899999999876432121 233333322 26799999999998643
No 154
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.61 E-value=7.5e-15 Score=115.69 Aligned_cols=115 Identities=20% Similarity=0.262 Sum_probs=73.7
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+.++|+++|++|||||||+++|.+. ......+..|.+.... ...+..+.++||||... +......++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~-~~~~~~~t~g~~~~~i-~~~~~~~~~~D~~G~~~----------~~~~~~~~~ 79 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASE-DISHITPTQGFNIKTV-QSDGFKLNVWDIGGQRA----------IRPYWRNYF 79 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcC-CCcccCCCCCcceEEE-EECCEEEEEEECCCCHH----------HHHHHHHHh
Confidence 34689999999999999999999997 3333344444333221 12367789999999632 122233333
Q ss_pred hcccCccEEEEEEeCCCCCCh--hhHHHHHHH---HhcCCcEEEEeecCCCCChH
Q 026112 170 STRVSLKRVCLLIDTKWGVKP--RDHELISLM---ERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~--~~~~~~~~l---~~~~~p~i~v~nK~D~~~~~ 219 (243)
..+|++++|+|+...... ....+...+ ...++|+++++||+|+....
T Consensus 80 ---~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (173)
T cd04155 80 ---ENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA 131 (173)
T ss_pred ---cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC
Confidence 338999999998753111 112222222 23468999999999997643
No 155
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.61 E-value=1.4e-14 Score=129.42 Aligned_cols=137 Identities=15% Similarity=0.139 Sum_probs=89.4
Q ss_pred EEEEecCCCCchhHHHHHHhccccccc-------------c------------------cCCCCceEEEEEEE---eCCc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVR-------------T------------------SDKPGLTQTINFFK---LGTK 139 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~-------------v------------------s~~~gtT~~~~~~~---~~~~ 139 (243)
+|+++|+.++|||||+++|+...+... . ....|.|.+..+.. .+..
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 789999999999999999985431100 0 01234566654433 2568
Q ss_pred EEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCCh
Q 026112 140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFP 218 (243)
Q Consensus 140 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~ 218 (243)
+.++||||+.+ +..........+|++++|+|+..++..++.+.+..+...++| +++|+||+|+...
T Consensus 82 ~~liDtPGh~~-------------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~ 148 (406)
T TIGR02034 82 FIVADTPGHEQ-------------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDY 148 (406)
T ss_pred EEEEeCCCHHH-------------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccc
Confidence 99999999632 222222334459999999999988888887777777777664 8899999999853
Q ss_pred H--HHHHHHHHHHHHHhhCC---CccccCC
Q 026112 219 I--DVARRAMQIEESLKANN---SLVQPVV 243 (243)
Q Consensus 219 ~--~~~~~~~~l~~~l~~~~---~~~~pi~ 243 (243)
. .+....+.+.+.+...+ .++.|||
T Consensus 149 ~~~~~~~i~~~~~~~~~~~~~~~~~iipiS 178 (406)
T TIGR02034 149 DEEVFENIKKDYLAFAEQLGFRDVTFIPLS 178 (406)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCccEEEee
Confidence 2 22333344444333322 2355654
No 156
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.61 E-value=1.1e-14 Score=126.75 Aligned_cols=85 Identities=24% Similarity=0.319 Sum_probs=66.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE--e-C-----------------CcEEEEeCCCCCCCc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L-G-----------------TKLCLVDLPGYGFAY 152 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~--~-~-----------------~~~~liDTpG~~~~~ 152 (243)
++|+++|.||+|||||+|+|++. . +.++++|+||+++.... . + ..+.++||||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~-~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKA-G-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC-C-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 68999999999999999999998 4 78999999998876432 1 1 248999999987543
Q ss_pred cchHHHHHHHHHHHHHHhcccCccEEEEEEeCC
Q 026112 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (243)
... ..+..+++...+.+|++++|+|+.
T Consensus 81 ~~g------~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKG------EGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ChH------HHHHHHHHHHHHhCCEEEEEEeCC
Confidence 221 234556666677799999999974
No 157
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.61 E-value=7e-15 Score=117.49 Aligned_cols=111 Identities=18% Similarity=0.180 Sum_probs=69.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
..+|+++|.+|+|||||++++..... ....+..|.... .....+..+.+|||||... +..+...++..
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~-~~~~~T~~~~~~-~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~~~ 84 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEV-VTTIPTIGFNVE-TVEYKNLKFTMWDVGGQDK----------LRPLWRHYYQN 84 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc-cccCCccccceE-EEEECCEEEEEEECCCCHh----------HHHHHHHHhcC
Confidence 46999999999999999999976522 222222222211 1112356799999999632 12233344443
Q ss_pred ccCccEEEEEEeCCCC--CChhhHHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 172 RVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
+|++++|+|++.. +......+.+.+.. ...|+++|+||+|+..
T Consensus 85 ---ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 85 ---TNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred ---CCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 9999999998753 12222233333332 2579999999999865
No 158
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.61 E-value=1.9e-14 Score=113.72 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=68.6
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCce-EEEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT-~~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
+|+++|.+|+|||||++++++... ...+..|. .+.. .... ...+.+|||||... +..+...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF---DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQER----------FKCIAST 68 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHH----------HHhhHHH
Confidence 689999999999999999998732 22222222 2221 1111 34689999999532 2333334
Q ss_pred HHhcccCccEEEEEEeCCCCCChh-hHHHHHHHHhc----CCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS----QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~~----~~p~i~v~nK~D~~~~ 218 (243)
+++ .+|++++|+|++...+.. ...++..+... ..|+++|.||+|+...
T Consensus 69 ~~~---~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 69 YYR---GAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121 (170)
T ss_pred Hhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcc
Confidence 443 399999999987531111 23445444322 2569999999998654
No 159
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.61 E-value=7e-15 Score=114.76 Aligned_cols=109 Identities=13% Similarity=0.098 Sum_probs=68.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
++|+++|.+|+|||||+++++.... ...+.+|..+.. .... ...+.+|||||... +..+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTF---IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ----------FASMRDL 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCchhheEEEEEEECCEEEEEEEEECCCccc----------ccchHHH
Confidence 5899999999999999999987631 122223322221 1111 23577899999633 1122333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~ 217 (243)
++.. +|++++|+|.++..+-.+ ..++..+.. .+.|+++|+||+|+..
T Consensus 69 ~~~~---ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 69 YIKN---GQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120 (163)
T ss_pred HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 3333 899999999876422121 234444432 3689999999999864
No 160
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.61 E-value=2e-14 Score=112.15 Aligned_cols=112 Identities=16% Similarity=0.141 Sum_probs=71.3
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCce-EEE--EEEE----eCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI--NFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT-~~~--~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
+|+++|.+|||||||+++|.... ......+..++ .++ .... ....+.+|||||.. .+..+..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 70 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNG-AVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE----------LYSDMVS 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH----------HHHHHHH
Confidence 79999999999999999998651 12233333333 222 1111 12468899999942 1233444
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc--CCcEEEEeecCCCCChH
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~p~i~v~nK~D~~~~~ 219 (243)
.++. .+|++++|+|.+...+... ..+++.+... +.|+++|+||+|+....
T Consensus 71 ~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 123 (164)
T cd04101 71 NYWE---SPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKA 123 (164)
T ss_pred HHhC---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc
Confidence 4443 4899999999876422221 3444544433 58999999999997543
No 161
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.60 E-value=5e-14 Score=116.70 Aligned_cols=125 Identities=21% Similarity=0.258 Sum_probs=88.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--------------------------------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-------------------------------------- 132 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~-------------------------------------- 132 (243)
..|.|+++|++|+||||++++|++.. ....+. ..+|+.+.
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~-~~~~~~-g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 102 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRD-FLPRGS-GIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDR 102 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCC-ccccCC-CcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999862 111110 00111100
Q ss_pred -------------EE----EeCCcEEEEeCCCCCCC---ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh
Q 026112 133 -------------FF----KLGTKLCLVDLPGYGFA---YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192 (243)
Q Consensus 133 -------------~~----~~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~ 192 (243)
.. +....+.++||||+... .........+..++..|+... .+++++|+|+..++...+
T Consensus 103 ~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~--~~IIL~Vvda~~d~~~~d 180 (240)
T smart00053 103 VTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKE--ECLILAVTPANVDLANSD 180 (240)
T ss_pred hcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCc--cCeEEEEEECCCCCCchh
Confidence 00 01257999999999643 112445566777788887642 568999999987777666
Q ss_pred -HHHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 193 -HELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 193 -~~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
.++.+.+...+.|+++|+||+|...+.
T Consensus 181 ~l~ia~~ld~~~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 181 ALKLAKEVDPQGERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHHHHHHHcCCcEEEEEECCCCCCcc
Confidence 588889988999999999999998754
No 162
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.60 E-value=3e-14 Score=115.39 Aligned_cols=115 Identities=21% Similarity=0.204 Sum_probs=70.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|++|+|||||++.+.+........+..+.......... + ..+.+|||||... +..+...
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~~ 74 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER----------FRTITST 74 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchh----------HHHHHHH
Confidence 3579999999999999999999987311111122221111111111 2 3678999999532 2233344
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc--CCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~p~i~v~nK~D~~~~ 218 (243)
++.. ++++++|+|+++..+... ..+++.+... ..|+++|+||+|+...
T Consensus 75 ~~~~---a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~ 125 (199)
T cd04110 75 YYRG---THGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPER 125 (199)
T ss_pred HhCC---CcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 4433 899999999876422222 2344444332 4799999999999754
No 163
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.60 E-value=1.6e-14 Score=112.03 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=68.5
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||+|++++.. ... ...+.++.+... ... ...+.+|||||... +......
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~ 68 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENK-FNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER----------YHALGPI 68 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchHH----------HHHhhHH
Confidence 379999999999999999999873 221 122222222211 111 23588999999421 2223333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~ 218 (243)
++. .+|++++|+|.+++..... ..+++.+... +.|+++|+||+|+...
T Consensus 69 ~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~ 120 (162)
T cd04123 69 YYR---DADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120 (162)
T ss_pred Hhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 333 3899999999876422222 2333333322 5899999999999854
No 164
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.60 E-value=1.3e-14 Score=116.65 Aligned_cols=108 Identities=15% Similarity=0.178 Sum_probs=68.3
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---EEEEeC--CcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~---~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|.+|+|||||+++|+... ....+++|+.+. .....+ ..+.+|||||... +..+...+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~ 67 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH---FVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE----------YTALRDQW 67 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC---CCccCCCchHhhEEEEEEECCEEEEEEEEECCCchh----------hHHHHHHH
Confidence 48999999999999999998762 122333333221 111112 3478999999532 22233334
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh------cCCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~------~~~p~i~v~nK~D~~~ 217 (243)
+.. +|++++|+|.+...+... ..+++.+.. .+.|+++|+||+|+..
T Consensus 68 ~~~---ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 68 IRE---GEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred HHh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 443 899999999876432222 234444432 3579999999999964
No 165
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.60 E-value=1.3e-14 Score=114.82 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=70.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE-EE-EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-IN-FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~-~~-~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||++.+.+... ...+..|..+ .. .... ...+.+|||||... +..+...
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~l~~~ 69 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF---PDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAE----------FTAMRDQ 69 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC---CCCcCCcccceEEEEEEECCEEEEEEEEeCCCchh----------hHHHhHH
Confidence 5899999999999999999987631 1222222221 11 1111 24688999999532 2334444
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhH-HHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|.++..+.... .+.+.+.. .+.|+++|.||+|+...
T Consensus 70 ~~~~---~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~ 122 (172)
T cd04141 70 YMRC---GEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQ 122 (172)
T ss_pred Hhhc---CCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhc
Confidence 4443 8999999998875443332 33344432 36899999999998653
No 166
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.60 E-value=2.2e-14 Score=115.31 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=68.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCce-EEE--EEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT-~~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.+|+++|.+|+|||||++++.+.. .....+..++ .+. ..... ...+.+|||||... +.....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 68 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGA--FLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQER----------FRSVTH 68 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--CCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHH----------HHHhhH
Confidence 379999999999999999998873 2222222222 222 11222 24688999999421 222233
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
.++. .+|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 69 ~~~~---~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 120 (191)
T cd04112 69 AYYR---DAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSG 120 (191)
T ss_pred HHcc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchh
Confidence 3333 3899999999876422221 234444433 2579999999999964
No 167
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.60 E-value=3.2e-14 Score=116.48 Aligned_cols=110 Identities=22% Similarity=0.250 Sum_probs=72.7
Q ss_pred EEEEecCCCCchhHHHHHHhccccccc-----------c------cCCCCceEEEE---EEE-----eCCcEEEEeCCCC
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVR-----------T------SDKPGLTQTIN---FFK-----LGTKLCLVDLPGY 148 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~-----------v------s~~~gtT~~~~---~~~-----~~~~~~liDTpG~ 148 (243)
+|+++|..|+|||||+++|+....... . ....|+|.... +.. ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999997532110 0 00122232211 111 1256899999997
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
.+. ......++. .+|++++|+|+..+.......+++.+...+.|+++|+||+|+.
T Consensus 82 ~~f----------~~~~~~~~~---~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNF----------MDEVAAALR---LSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred cch----------HHHHHHHHH---hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 541 111222222 2899999999988766666666666666679999999999986
No 168
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.59 E-value=1.1e-14 Score=114.17 Aligned_cols=113 Identities=15% Similarity=0.016 Sum_probs=70.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---EEE--EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~---~~~--~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||+++|++.. . .....++..+. ... .....+.+|||||..+.. .+...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~----------~~~~~ 67 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGK-F--PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYD----------RLRPL 67 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-C--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccc----------ccchh
Confidence 479999999999999999999873 1 11122222211 111 113468899999975311 11111
Q ss_pred HHhcccCccEEEEEEeCCCCCChh--hHHHHHHHHhc--CCcEEEEeecCCCCChHHH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERS--QTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~--~~~~~~~l~~~--~~p~i~v~nK~D~~~~~~~ 221 (243)
++ ..+|++++|+|.+...+.. ...++..+... +.|+++|+||+|+..+...
T Consensus 68 ~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 122 (171)
T cd00157 68 SY---PNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENT 122 (171)
T ss_pred hc---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhh
Confidence 11 3489999999987632222 23345544433 5999999999999876543
No 169
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.59 E-value=1.6e-14 Score=118.42 Aligned_cols=110 Identities=18% Similarity=0.200 Sum_probs=70.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCC-ceEEEEE--EEe----CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINF--FKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~g-tT~~~~~--~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
.+|+++|.+|+|||||+|+|++.. ....+.. .+.+... ... ...+.+|||||... +..+.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~---~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~----------~~~l~ 67 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG---FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI----------GGKML 67 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC---CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH----------HHHHH
Confidence 379999999999999999999873 2222222 2233321 111 24678999999521 23344
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc------CCcEEEEeecCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS------QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~------~~p~i~v~nK~D~~~~ 218 (243)
..++.. +|++++|+|.+...+... ..++..+... ..|+++|.||+|+...
T Consensus 68 ~~~~~~---ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~ 124 (215)
T cd04109 68 DKYIYG---AHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN 124 (215)
T ss_pred HHHhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccc
Confidence 444443 999999999876422222 2344444432 3579999999999753
No 170
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.59 E-value=2.1e-14 Score=128.42 Aligned_cols=141 Identities=23% Similarity=0.308 Sum_probs=93.8
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccc-ccccccCCCCceEEEEEEE-----------------e------------CCc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK-----------------L------------GTK 139 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~-~~~~vs~~~gtT~~~~~~~-----------------~------------~~~ 139 (243)
....+|+++|..++|||||+.+|++.. +........|.|.++.+.. . ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 355789999999999999999997641 0011112345565543210 0 146
Q ss_pred EEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC-ChhhHHHHHHHHhcCC-cEEEEeecCCCCC
Q 026112 140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVF 217 (243)
Q Consensus 140 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~-p~i~v~nK~D~~~ 217 (243)
+.++||||.. .+...++.....+|++++|+|+.++. .....+.+..+...+. |+++|+||+|+.+
T Consensus 87 i~liDtPG~~-------------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 87 VSFVDAPGHE-------------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVS 153 (411)
T ss_pred EEEEECCCHH-------------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecccc
Confidence 8999999952 34455666666689999999999775 5566666677766665 6999999999987
Q ss_pred hHHHHHHHHHHHHHHhhC---CCccccCC
Q 026112 218 PIDVARRAMQIEESLKAN---NSLVQPVV 243 (243)
Q Consensus 218 ~~~~~~~~~~l~~~l~~~---~~~~~pi~ 243 (243)
........+.++..+... +.+++|+|
T Consensus 154 ~~~~~~~~~~i~~~l~~~~~~~~~ii~vS 182 (411)
T PRK04000 154 KERALENYEQIKEFVKGTVAENAPIIPVS 182 (411)
T ss_pred chhHHHHHHHHHHHhccccCCCCeEEEEE
Confidence 655544455566555432 34455553
No 171
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.59 E-value=1.5e-14 Score=114.07 Aligned_cols=109 Identities=18% Similarity=0.230 Sum_probs=67.6
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE-EEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~-~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (243)
+|+++|.+|+|||||+++|.+.. . ....+.+..+.. ....+..+.+|||||.... ......++.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~-~--~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~----------~~~~~~~~~-- 65 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE-F--MQPIPTIGFNVETVEYKNLKFTIWDVGGKHKL----------RPLWKHYYL-- 65 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC-C--CCcCCcCceeEEEEEECCEEEEEEECCCChhc----------chHHHHHhc--
Confidence 58899999999999999999872 1 222221111222 1223567899999996431 112223333
Q ss_pred cCccEEEEEEeCCCC--CChhhHHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 173 VSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
.+|++++|+|++.. +......+...+.. .+.|+++|+||+|+...
T Consensus 66 -~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 115 (169)
T cd04158 66 -NTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA 115 (169)
T ss_pred -cCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC
Confidence 38999999998764 22222223333322 24799999999999643
No 172
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.59 E-value=1.8e-14 Score=113.33 Aligned_cols=112 Identities=13% Similarity=0.042 Sum_probs=68.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|+++|.+|||||||+++++.........+..+......... ....+.+|||||.... ..+...++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~ 70 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF----------GGLRDGYY 70 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhh----------ccccHHHh
Confidence 3799999999999999999986521122222222211111111 1346889999996431 11222233
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc--CCcEEEEeecCCCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVF 217 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~p~i~v~nK~D~~~ 217 (243)
. .+|++++|+|.+.+.+... ..+++.+... +.|+++|+||+|+..
T Consensus 71 ~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~ 118 (166)
T cd00877 71 I---GGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKD 118 (166)
T ss_pred c---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccc
Confidence 2 3899999999886532222 2344444332 699999999999973
No 173
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.59 E-value=3.9e-14 Score=113.10 Aligned_cols=113 Identities=17% Similarity=0.162 Sum_probs=70.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
..+|+++|.+|+|||||++++..... ....+..|.+.. .....+..+.+|||||... +..+...|+..
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~-~~~~pt~g~~~~-~~~~~~~~~~i~D~~Gq~~----------~~~~~~~~~~~ 84 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEYKNISFTVWDVGGQDK----------IRPLWRHYFQN 84 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC-ccccCCcceeEE-EEEECCEEEEEEECCCCHH----------HHHHHHHHhcc
Confidence 46999999999999999999986522 222222222211 1112356799999999521 22333444443
Q ss_pred ccCccEEEEEEeCCCCCChh--hHHHHHHHHh---cCCcEEEEeecCCCCChH
Q 026112 172 RVSLKRVCLLIDTKWGVKPR--DHELISLMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~--~~~~~~~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
+|++++|+|++...+-. ..++.+.+.. .+.|+++|+||+|+....
T Consensus 85 ---a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~ 134 (181)
T PLN00223 85 ---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
T ss_pred ---CCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC
Confidence 89999999988642111 1222233322 268999999999987543
No 174
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.59 E-value=9.8e-15 Score=115.93 Aligned_cols=110 Identities=17% Similarity=0.155 Sum_probs=67.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE-----EEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~-----~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||++++++.. .+..+.+++.+ ......+..+.+|||||..+ +..+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~ 68 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH---FVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDE----------YSILPQK 68 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC---CccccCcchhhhEEEEEEECCEEEEEEEEECCChHh----------hHHHHHH
Confidence 489999999999999999999773 22323333321 22211234578999999642 1222222
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHH-H---hcCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~---~~~~p~i~v~nK~D~~~~ 218 (243)
++. .++++++++|.+...+... ..+...+ . ..+.|+++|+||+|+...
T Consensus 69 ~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 121 (180)
T cd04137 69 YSI---GIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQ 121 (180)
T ss_pred HHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhc
Confidence 332 2899999999876422211 1222222 2 236799999999998743
No 175
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.59 E-value=2.5e-14 Score=113.47 Aligned_cols=111 Identities=16% Similarity=0.185 Sum_probs=69.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE-EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
.++|+++|.+|+|||||++++..... . ...|.+..+.... ..+..+.+|||||... +..+...|+.
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~-~--~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~~~~~ 79 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES-V--TTIPTIGFNVETVTYKNISFTVWDVGGQDK----------IRPLWRHYYT 79 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-C--CcCCccccceEEEEECCEEEEEEECCCChh----------hHHHHHHHhC
Confidence 47999999999999999999965422 1 2222222222211 2356789999999632 1223344444
Q ss_pred cccCccEEEEEEeCCCCC--ChhhHHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 171 TRVSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~--~~~~~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
. +|++++|+|++... ......+...+.. .+.|+++|+||+|+...
T Consensus 80 ~---ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 80 N---TQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA 129 (175)
T ss_pred C---CCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence 3 99999999987542 1122222233322 25799999999998643
No 176
>PLN03110 Rab GTPase; Provisional
Probab=99.59 E-value=2.7e-14 Score=117.19 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=73.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
...+|+++|.+|+|||||+++|++... .....+....+. ..... ...+.+|||||... +..+.
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~--~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~----------~~~~~ 78 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEF--CLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER----------YRAIT 78 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHH----------HHHHH
Confidence 346999999999999999999998732 112222222222 12222 24788999999522 23344
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
..++.. ++++++|+|.+...+... ..++..+.. .+.|+++|+||+|+...
T Consensus 79 ~~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 132 (216)
T PLN03110 79 SAYYRG---AVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHL 132 (216)
T ss_pred HHHhCC---CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccc
Confidence 444443 899999999876432222 245555543 36899999999998643
No 177
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.59 E-value=1.8e-14 Score=116.57 Aligned_cols=108 Identities=15% Similarity=0.171 Sum_probs=67.8
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|.+|+|||||++++++.. ....+..++.+.. .+.. + ..+.+|||||... +..+...+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~~ 67 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDT---FEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYS----------FPAMRKLS 67 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC---CCccCCCchhhheeEEEEECCEEEEEEEEECCCchh----------hhHHHHHH
Confidence 58999999999999999999873 1223333332221 1111 2 4688999999643 12222223
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~ 217 (243)
+. .+|++++|+|+.+..+... ..++..+. ..+.|+++|+||+|+..
T Consensus 68 ~~---~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 68 IQ---NSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred hh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 33 3899999999876422222 22222222 24689999999999975
No 178
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.59 E-value=2e-14 Score=112.98 Aligned_cols=112 Identities=15% Similarity=0.064 Sum_probs=67.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
...+|+++|.+|+|||||++++++... . ....+..+.+. .... ....+.+|||||... +..+.
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~ 71 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKF-D-TQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER----------FRSLR 71 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCC-C-cCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHH----------HHHhH
Confidence 347999999999999999999987632 1 11122222221 1111 134578999999421 23334
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH-------hcCCcEEEEeecCCCCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-------RSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~-------~~~~p~i~v~nK~D~~~ 217 (243)
..++.. +|++++|+|.+...+... ..+...+. ..+.|+++|+||+|+..
T Consensus 72 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (170)
T cd04116 72 TPFYRG---SDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE 128 (170)
T ss_pred HHHhcC---CCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc
Confidence 444433 899999999775422221 12332222 13579999999999863
No 179
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.58 E-value=1.2e-14 Score=112.59 Aligned_cols=109 Identities=13% Similarity=0.078 Sum_probs=70.1
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|++|+|||||++++++.. ....+.+++.+... ... ...+.++||||... +..+...+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~ 67 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT---FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE----------FSAMRDLY 67 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC---CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH----------HHHHHHHH
Confidence 58999999999999999999873 34444445443322 122 24688999999632 12233333
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
+. .+|++++|+|.....+... ..+...+.. .+.|+++|+||+|+...
T Consensus 68 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 119 (160)
T cd00876 68 IR---QGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENE 119 (160)
T ss_pred Hh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccccc
Confidence 33 3899999999875422111 222222321 36899999999999863
No 180
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.58 E-value=9.2e-15 Score=127.39 Aligned_cols=141 Identities=25% Similarity=0.202 Sum_probs=83.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc----ccccccCCCCceEEEEEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~----~~~~vs~~~gtT~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..+|+++|.+|+|||||||+|.|-. ..+.++. ..||.....|.. -+.+.+||.||++.+..+. ..++
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv-~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~------~~Yl 107 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGV-VETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPP------EEYL 107 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSS-HSCCTS-EEEE-SS-TTEEEEEE--GGGSS--H------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC-CcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCH------HHHH
Confidence 3699999999999999999998742 1222222 235666666654 3579999999997643221 1222
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC------------Ch-HHHHHHHHHHHHHH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV------------FP-IDVARRAMQIEESL 232 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~------------~~-~~~~~~~~~l~~~l 232 (243)
... .....|.++++.+. .+...+..+.+.++..++|+++|.||+|.. .. .-+.+..+.+.+.+
T Consensus 108 ~~~--~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 108 KEV--KFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp HHT--TGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred HHc--cccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 221 12347887776654 477899999999999999999999999962 11 12456667777788
Q ss_pred hhCCCccccCC
Q 026112 233 KANNSLVQPVV 243 (243)
Q Consensus 233 ~~~~~~~~pi~ 243 (243)
...+..-.|||
T Consensus 184 ~k~gv~~P~VF 194 (376)
T PF05049_consen 184 QKAGVSEPQVF 194 (376)
T ss_dssp HCTT-SS--EE
T ss_pred HHcCCCcCceE
Confidence 87776555553
No 181
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.58 E-value=2.7e-14 Score=112.02 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=70.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|||||||++++++.. ......+..+.+... ... + ..+.++||||... +.....
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~ 74 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGL--FPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER----------FRSITQ 74 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHH
Confidence 4799999999999999999998652 111222222222211 112 3 4578899999532 222333
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH---hcCCcEEEEeecCCCCChHH
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~p~i~v~nK~D~~~~~~ 220 (243)
.++.. +|++++|+|.+.+.+... ..++..+. ..+.|+++|+||+|+....+
T Consensus 75 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~ 129 (169)
T cd04114 75 SYYRS---ANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERRE 129 (169)
T ss_pred HHhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc
Confidence 34433 899999999876422211 23433333 23689999999999975443
No 182
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.58 E-value=4.3e-14 Score=129.65 Aligned_cols=137 Identities=20% Similarity=0.233 Sum_probs=92.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccc-ccccCC-------------------CCceEE---EEEEEeCCcEEEEeCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDK-------------------PGLTQT---INFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~-~~vs~~-------------------~gtT~~---~~~~~~~~~~~liDTpG~ 148 (243)
..+|+++|.+|+|||||+++|+..... ...+.. .|.|.. ..+...+..+.+|||||+
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 459999999999999999999742110 111111 112221 223334678999999997
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHH
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 228 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l 228 (243)
.+. ......++. .+|++++|+|+..++......+++.+...++|+++++||+|+.... ..+.++.+
T Consensus 90 ~df----------~~~~~~~l~---~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~-~~~~l~~i 155 (526)
T PRK00741 90 EDF----------SEDTYRTLT---AVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGRE-PLELLDEI 155 (526)
T ss_pred hhh----------HHHHHHHHH---HCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccC-HHHHHHHH
Confidence 431 111122222 3899999999988887777788888888899999999999987543 44556777
Q ss_pred HHHHhhCCCccc-cC
Q 026112 229 EESLKANNSLVQ-PV 242 (243)
Q Consensus 229 ~~~l~~~~~~~~-pi 242 (243)
++.++....+++ ||
T Consensus 156 ~~~l~~~~~p~~~Pi 170 (526)
T PRK00741 156 EEVLGIACAPITWPI 170 (526)
T ss_pred HHHhCCCCeeEEecc
Confidence 887776555444 54
No 183
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.57 E-value=2.3e-14 Score=114.59 Aligned_cols=110 Identities=14% Similarity=0.041 Sum_probs=68.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceE-EEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~-~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.+|+++|.+|+|||||++++++... ...+.+++. +.. .... ...+.+|||||... +..+..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~---~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~----------~~~~~~ 67 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKF---PEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEE----------YDRLRP 67 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC---CCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchh----------HHHHHH
Confidence 3799999999999999999998731 222322222 111 1111 23578999999532 122222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHh--cCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~--~~~p~i~v~nK~D~~~~ 218 (243)
.++ ..+|++++|+|.++..+.... .++..+.. .+.|+++|+||+|+...
T Consensus 68 ~~~---~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 68 LSY---PDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKD 120 (187)
T ss_pred HhC---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhC
Confidence 232 349999999998764333322 23333332 36899999999998653
No 184
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.57 E-value=2.6e-14 Score=114.91 Aligned_cols=133 Identities=19% Similarity=0.174 Sum_probs=80.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCC-CceEEEEE--EE-e--CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINF--FK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~-gtT~~~~~--~~-~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..+|+++|..|+|||||+.++..... ..++. ..+.+... .. . ...+.+|||||... +..+.
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~---~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~----------~~~l~ 72 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGST---ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR----------FCTIF 72 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHH
Confidence 47999999999999999999997631 12221 12222211 11 1 25688999999632 23344
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh--cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
..|+. .+|++++|+|.+...+... ..+++.+.. .+.|+++|.||+|+.....+ ..+..++.....+..++++
T Consensus 73 ~~~~~---~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v--~~~~~~~~a~~~~~~~~e~ 147 (189)
T cd04121 73 RSYSR---GAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQV--ATEQAQAYAERNGMTFFEV 147 (189)
T ss_pred HHHhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCC--CHHHHHHHHHHcCCEEEEe
Confidence 44444 3999999999876533332 245555543 26899999999999653221 1223344444444444443
No 185
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.57 E-value=1.2e-14 Score=113.90 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=67.2
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|.+|+|||||+++++... ....+++++... ..... ...+.+|||||...... .....+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~ 68 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR---FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT---------EQLERS 68 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc---cccccCCChHHhceEEEEECCEEEEEEEEECCCCccccc---------chHHHH
Confidence 48999999999999999998752 223333333211 11112 23578999999753100 111222
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-----cCCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-----~~~p~i~v~nK~D~~~ 217 (243)
+. .+|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 69 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 120 (165)
T cd04146 69 IR---WADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH 120 (165)
T ss_pred HH---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH
Confidence 22 2899999999876522221 233444432 3689999999999854
No 186
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=2.9e-14 Score=122.68 Aligned_cols=86 Identities=24% Similarity=0.301 Sum_probs=69.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---------------------CCcEEEEeCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---------------------GTKLCLVDLPGYGF 150 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---------------------~~~~~liDTpG~~~ 150 (243)
.++++|+|.||+|||||+|+++.. . +.+.++|+||.+++..-. ...+.++|.+|+-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~-~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~ 79 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKA-G-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK 79 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcC-C-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence 468999999999999999999999 4 888999999998765321 13688999999865
Q ss_pred CccchHHHHHHHHHHHHHHhcccCccEEEEEEeCC
Q 026112 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (243)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (243)
..+.. +.+..+|+...+++|.+++|+|++
T Consensus 80 GAs~G------eGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 80 GASKG------EGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred CcccC------CCcchHHHHhhhhcCeEEEEEEec
Confidence 43322 246677888888899999999975
No 187
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.57 E-value=6.1e-14 Score=130.26 Aligned_cols=126 Identities=23% Similarity=0.267 Sum_probs=86.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccc----cc----------cCCCCceEEE---EEEEeCCcEEEEeCCCCCCCccch
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVV----RT----------SDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKE 155 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~----~v----------s~~~gtT~~~---~~~~~~~~~~liDTpG~~~~~~~~ 155 (243)
.+|+++|+.++|||||+++|+...... .+ ....|.|... .+.+.+..+.+|||||+.+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~D----- 76 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHAD----- 76 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHH-----
Confidence 479999999999999999998642100 01 1123555543 2334578899999999743
Q ss_pred HHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHH
Q 026112 156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (243)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l 232 (243)
+...+..+++ .+|++++|+|+..+...+...++..+...++|+++|+||+|+.... .....+.+.+.+
T Consensus 77 -----F~~ev~~~l~---~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~-~~~v~~ei~~l~ 144 (594)
T TIGR01394 77 -----FGGEVERVLG---MVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSAR-PDEVVDEVFDLF 144 (594)
T ss_pred -----HHHHHHHHHH---hCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcC-HHHHHHHHHHHH
Confidence 1122233333 3899999999998888888888888888999999999999986432 223334444444
No 188
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.57 E-value=4.2e-14 Score=116.30 Aligned_cols=115 Identities=11% Similarity=0.018 Sum_probs=74.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
...++|+++|.+|+|||||+++++.........+..|++....... ....+.+|||||... +..+..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~ 80 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLRD 80 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchh----------hhhhhH
Confidence 3457999999999999999999876632233344444433322221 135788999999643 122333
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh--cCCcEEEEeecCCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~p~i~v~nK~D~~~ 217 (243)
.|+.. +|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 81 ~~~~~---~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 81 GYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (219)
T ss_pred HHccc---ccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh
Confidence 34433 899999999886532222 234444432 3689999999999853
No 189
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.57 E-value=2.8e-14 Score=112.21 Aligned_cols=111 Identities=14% Similarity=0.113 Sum_probs=69.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
++|+++|.+|+|||||++++.+... ...+.+++.+. ..... ...+.+|||||... +..+...
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 68 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF---IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQ----------FTAMREL 68 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC---CcccCCcchheEEEEEEECCEEEEEEEEeCCCccc----------chhhhHH
Confidence 5799999999999999999997732 22233333221 11111 24678999999643 1223333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCChH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~~ 219 (243)
++.. ++++++|+|.+.+.+-.. ..+.+.+. ..+.|+++|+||+|+....
T Consensus 69 ~~~~---~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~ 122 (168)
T cd04177 69 YIKS---GQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDR 122 (168)
T ss_pred HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccC
Confidence 4333 899999999875321111 22333332 2368999999999997543
No 190
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.57 E-value=3.1e-14 Score=113.05 Aligned_cols=110 Identities=15% Similarity=0.083 Sum_probs=71.5
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||++++.... ....+.+|..+... ... + ..+.+|||||... +..+...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~---f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK---FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED----------YDRLRPL 68 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC---CCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccc----------hhhhhhh
Confidence 589999999999999999999863 23334444332111 111 2 4678999999643 1122222
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHhc--CCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~p~i~v~nK~D~~~~ 218 (243)
++. .+|++++|+|.+...+.... .++..+... +.|+++|.||+|+...
T Consensus 69 ~~~---~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~ 120 (175)
T cd01874 69 SYP---QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 120 (175)
T ss_pred hcc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhC
Confidence 333 38999999998765333332 355555432 6899999999998654
No 191
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.56 E-value=6.9e-14 Score=130.13 Aligned_cols=128 Identities=20% Similarity=0.208 Sum_probs=83.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccc-------cccc------CCCCceEEEEEE---Ee--C---CcEEEEeCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGV-------VRTS------DKPGLTQTINFF---KL--G---TKLCLVDLPGYGF 150 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~-------~~vs------~~~gtT~~~~~~---~~--~---~~~~liDTpG~~~ 150 (243)
..+|+++|..++|||||+++|+..... ..+. ...|.|...... +. + ..+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 358999999999999999999875210 1111 123566553221 11 2 5689999999853
Q ss_pred CccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHH
Q 026112 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (243)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~ 230 (243)
+...+..++.. +|++++|+|++.+........+..+...+.|+++|+||+|+.... .....+.+.+
T Consensus 83 ----------F~~~v~~~l~~---aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~-~~~~~~el~~ 148 (595)
T TIGR01393 83 ----------FSYEVSRSLAA---CEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD-PERVKKEIEE 148 (595)
T ss_pred ----------HHHHHHHHHHh---CCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC-HHHHHHHHHH
Confidence 12223334433 899999999998877766555555555689999999999986432 2223344444
Q ss_pred HHh
Q 026112 231 SLK 233 (243)
Q Consensus 231 ~l~ 233 (243)
.++
T Consensus 149 ~lg 151 (595)
T TIGR01393 149 VIG 151 (595)
T ss_pred HhC
Confidence 443
No 192
>PRK10218 GTP-binding protein; Provisional
Probab=99.56 E-value=9.6e-14 Score=128.93 Aligned_cols=128 Identities=21% Similarity=0.186 Sum_probs=88.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccccc--------------ccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR--------------TSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYA 153 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~--------------vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~ 153 (243)
...+|+++|..++|||||+++|+....... .....|.|...... +.+..+.+|||||+.+.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df-- 81 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF-- 81 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchh--
Confidence 356899999999999999999997421100 01234555554322 23678999999997541
Q ss_pred chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHH
Q 026112 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (243)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l 232 (243)
...+..+++. +|++++|+|+..+...+...++..+...++|.++|+||+|+... ......+.+.+.+
T Consensus 82 --------~~~v~~~l~~---aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a-~~~~vl~ei~~l~ 148 (607)
T PRK10218 82 --------GGEVERVMSM---VDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGA-RPDWVVDQVFDLF 148 (607)
T ss_pred --------HHHHHHHHHh---CCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCC-chhHHHHHHHHHH
Confidence 1222333333 99999999999887778888888888889999999999998743 2333444555544
No 193
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.56 E-value=3.9e-14 Score=122.21 Aligned_cols=83 Identities=22% Similarity=0.211 Sum_probs=61.9
Q ss_pred EEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE--E-------------------------eCCcEEEEeCCC
Q 026112 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--K-------------------------LGTKLCLVDLPG 147 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~--~-------------------------~~~~~~liDTpG 147 (243)
|+++|.||+|||||+|+|++.. ..++++|+||.++... . ....+.++||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~--~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD--VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC--CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 5899999999999999999984 6789999999886532 1 124689999999
Q ss_pred CCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCC
Q 026112 148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (243)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (243)
+...... ...+...++...+.+|++++|+|++
T Consensus 79 lv~ga~~------~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHE------GKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCCCccc------hhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 8643211 1234445555556699999999986
No 194
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.56 E-value=6.2e-14 Score=128.64 Aligned_cols=133 Identities=20% Similarity=0.262 Sum_probs=88.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccc-ccccC-------------------CCCceEEE---EEEEeCCcEEEEeCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSD-------------------KPGLTQTI---NFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~-~~vs~-------------------~~gtT~~~---~~~~~~~~~~liDTpG~ 148 (243)
..+|+++|.+|+|||||+++|+..... ...+. ..|.|... .+...+..+.++||||+
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~ 90 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH 90 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh
Confidence 469999999999999999998643111 11111 11222222 23334778999999997
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHH
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 228 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l 228 (243)
.+. ....+ .++ ..+|++++|+|+..++......+++.+...++|+++++||+|+... ...+..+.+
T Consensus 91 ~df-----~~~~~-----~~l---~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~-~~~~ll~~i 156 (527)
T TIGR00503 91 EDF-----SEDTY-----RTL---TAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIR-DPLELLDEV 156 (527)
T ss_pred hhH-----HHHHH-----HHH---HhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCC-CHHHHHHHH
Confidence 421 11111 222 2399999999998887777777888887788999999999998643 244556677
Q ss_pred HHHHhhCCCc
Q 026112 229 EESLKANNSL 238 (243)
Q Consensus 229 ~~~l~~~~~~ 238 (243)
+..++....+
T Consensus 157 ~~~l~~~~~~ 166 (527)
T TIGR00503 157 ENELKINCAP 166 (527)
T ss_pred HHHhCCCCcc
Confidence 7777655433
No 195
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.56 E-value=1.1e-14 Score=115.16 Aligned_cols=129 Identities=19% Similarity=0.283 Sum_probs=70.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.+.|+|+|++|+|||+|+..|........++.. .-...+.. .+..+.+||+||+..- . ..+...
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~n~~~~~~~~~~~~~~lvD~PGH~rl--r-------~~~~~~- 69 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---ENNIAYNVNNSKGKKLRLVDIPGHPRL--R-------SKLLDE- 69 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S---SEEEECCGSSTCGTCECEEEETT-HCC--C-------HHHHHH-
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cCCceEEeecCCCCEEEEEECCCcHHH--H-------HHHHHh-
Confidence 368999999999999999999987321111111 00111111 2568999999997541 1 112222
Q ss_pred HhcccCccEEEEEEeCCCCCChhh----HHHHHHHH-----hcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD----HELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~----~~~~~~l~-----~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
+.....+.+|+||+|++. ....- ..++..+. ..+.|+++++||.|+............++++++.
T Consensus 70 ~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei~~ 143 (181)
T PF09439_consen 70 LKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEIDK 143 (181)
T ss_dssp HHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHHHH
T ss_pred hhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHHHH
Confidence 011233899999999874 11212 22333332 2368999999999999876666666666666553
No 196
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.56 E-value=8.2e-14 Score=113.13 Aligned_cols=110 Identities=16% Similarity=0.206 Sum_probs=71.7
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCc-eEEEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-TQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gt-T~~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.|+++|..|+|||||++++..... ...+..| +.+.. .... ...+.+|||+|... +..+...
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f---~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~----------~~~l~~~ 68 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF---CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQER----------FNSITSA 68 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC---CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchh----------hHHHHHH
Confidence 589999999999999999987631 2222222 22322 1122 25678999999532 2334455
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
|++. +|++++|+|.++..+... ..+++.+.. .+.|+++|.||+|+....
T Consensus 69 y~~~---ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~ 121 (202)
T cd04120 69 YYRS---AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121 (202)
T ss_pred HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 5554 999999999886533322 234454543 258999999999997533
No 197
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.56 E-value=4.1e-14 Score=113.35 Aligned_cols=111 Identities=22% Similarity=0.247 Sum_probs=69.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
.++|+++|++|||||||+++|.+.. .....+..+.+. ..+...+..+.++||||... . ......++.
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~-~~~~~~T~~~~~-~~i~~~~~~~~l~D~~G~~~------~----~~~~~~~~~- 85 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDR-LAQHVPTLHPTS-EELTIGNIKFKTFDLGGHEQ------A----RRLWKDYFP- 85 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC-CcccCCccCcce-EEEEECCEEEEEEECCCCHH------H----HHHHHHHhc-
Confidence 4789999999999999999999863 222222222221 11112356789999999532 1 122233333
Q ss_pred ccCccEEEEEEeCCCCC--ChhhHHHHHHHH---hcCCcEEEEeecCCCCC
Q 026112 172 RVSLKRVCLLIDTKWGV--KPRDHELISLME---RSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~--~~~~~~~~~~l~---~~~~p~i~v~nK~D~~~ 217 (243)
.+|++++|+|+++.. ......+...+. ..+.|+++|+||+|+..
T Consensus 86 --~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 86 --EVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred --cCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 389999999987531 112222333332 23589999999999974
No 198
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.56 E-value=3.8e-14 Score=111.77 Aligned_cols=108 Identities=16% Similarity=0.035 Sum_probs=67.5
Q ss_pred EEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
|+++|.+|+|||||++++++.. ....+..+..+.. .... ...+.+|||||.... ..+...++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~ 67 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA---FPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDY----------DRLRPLSY 67 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC---CCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCccc----------chhchhhc
Confidence 5799999999999999999873 1222222222211 1111 235889999996431 11222222
Q ss_pred hcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~~ 218 (243)
..+|++++|+|.+...+... ..++..+... +.|+++|.||+|+...
T Consensus 68 ---~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 117 (174)
T smart00174 68 ---PDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRED 117 (174)
T ss_pred ---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhC
Confidence 24899999999876422222 2345555432 6899999999999753
No 199
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.56 E-value=9.6e-14 Score=125.27 Aligned_cols=134 Identities=18% Similarity=0.213 Sum_probs=94.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccc-----------------------------cccCCCCceEEEEEEE---eCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------------RTSDKPGLTQTINFFK---LGT 138 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~-----------------------------~vs~~~gtT~~~~~~~---~~~ 138 (243)
...+|+++|..++|||||+.+|+...... ......|.|.++.... .+.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 45689999999999999999988631100 0011346777765443 256
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC-------ChhhHHHHHHHHhcCCc-EEEEe
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQTK-YQVVL 210 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-------~~~~~~~~~~l~~~~~p-~i~v~ 210 (243)
.+.++||||+.+ +..........+|++++|+|+..+. ..+..+.+..+...++| +++++
T Consensus 86 ~i~lIDtPGh~~-------------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~v 152 (446)
T PTZ00141 86 YFTIIDAPGHRD-------------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCI 152 (446)
T ss_pred EEEEEECCChHH-------------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEE
Confidence 899999999632 3444444455699999999998875 35677888888888987 67999
Q ss_pred ecCCCC----ChHHHHHHHHHHHHHHhhCCC
Q 026112 211 TKTDTV----FPIDVARRAMQIEESLKANNS 237 (243)
Q Consensus 211 nK~D~~----~~~~~~~~~~~l~~~l~~~~~ 237 (243)
||+|.. ....+.+..+.+.+.+...+.
T Consensus 153 NKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~ 183 (446)
T PTZ00141 153 NKMDDKTVNYSQERYDEIKKEVSAYLKKVGY 183 (446)
T ss_pred EccccccchhhHHHHHHHHHHHHHHHHhcCC
Confidence 999953 234567777778777765443
No 200
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.56 E-value=6.6e-14 Score=112.44 Aligned_cols=111 Identities=18% Similarity=0.140 Sum_probs=69.7
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEE-----EEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~-----~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|.+|+|||||++++++... ...+.+|..+ +........+.+|||||... +..+...+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~---~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~----------~~~l~~~~ 68 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYF---PQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEE----------FDRLRSLS 68 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCccCCcceeeeEEEEEECCEEEEEEEEECCCChh----------cccccccc
Confidence 789999999999999999998732 1222222111 11111134688999999632 11122223
Q ss_pred HhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCChHH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~~~~ 220 (243)
+ ..+|++++|+|.+...+... ..++..+... +.|+++|.||+|+....+
T Consensus 69 ~---~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~ 121 (189)
T cd04134 69 Y---ADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARN 121 (189)
T ss_pred c---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChh
Confidence 2 23899999999776433322 2355555432 689999999999976543
No 201
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.55 E-value=1.4e-13 Score=109.92 Aligned_cols=110 Identities=14% Similarity=0.114 Sum_probs=66.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+|+++|.+|+|||||++++++........+..|.......... ...+.+|||+|... +..+...++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~----------~~~~~~~~~ 70 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE----------FINMLPLVC 70 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchh----------HHHhhHHHC
Confidence 37999999999999999999887321111222221111111222 24688999999532 222333333
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTV 216 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~ 216 (243)
. .+|++++|+|.++..+..+ ..++..+.. ...| ++|+||+|+.
T Consensus 71 ~---~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 71 N---DAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLF 117 (182)
T ss_pred c---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence 3 3899999999876533222 234444433 2356 6889999996
No 202
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.55 E-value=8.9e-14 Score=111.41 Aligned_cols=113 Identities=22% Similarity=0.184 Sum_probs=69.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|+++|.+|+|||||++++++........+..|.+........ ...+.+|||||... +......++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~----------~~~~~~~~~ 70 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQER----------FRSLNNSYY 70 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH----------HHhhHHHHc
Confidence 47999999999999999999987321112222222222222222 23578999999532 122233333
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
. .+|++++|+|.+.+.+... ..++..+.. ...|+++|+||+|+...
T Consensus 71 ~---~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~ 120 (188)
T cd04125 71 R---GAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNN 120 (188)
T ss_pred c---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCccc
Confidence 3 3899999999876422221 234444433 24789999999998743
No 203
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=9.3e-14 Score=123.68 Aligned_cols=114 Identities=25% Similarity=0.373 Sum_probs=94.9
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE----eCCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
++.|.|-++|.-..|||||+.+|.+.. ...+..-|.|+.+-.+. .|..++|+||||+. .+.
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~--VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHa-------------AF~ 215 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSS--VAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHA-------------AFS 215 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCc--eehhhcCCccceeceEEEecCCCCEEEEecCCcHH-------------HHH
Confidence 578999999999999999999999883 44556678888874443 48899999999973 233
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
.+..+...-.|.|++|+.+.+++.++..+.++..+..++|+++++||+|....
T Consensus 216 aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a 268 (683)
T KOG1145|consen 216 AMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGA 268 (683)
T ss_pred HHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCC
Confidence 34445556689999999999999999999999999999999999999998754
No 204
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.55 E-value=1.3e-13 Score=107.71 Aligned_cols=111 Identities=15% Similarity=0.201 Sum_probs=68.6
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|.+|+|||||++.+++... .....+....+.. .... ...+.+|||||... +..+...+
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----------~~~~~~~~ 69 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEF--HSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER----------YQTITKQY 69 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC--CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHh----------HHhhHHHH
Confidence 799999999999999999987732 1122222222221 1122 24678999999532 22233334
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
+. .+|++++|+|.+..-+... ..+++.+.. ...|+++|.||+|+....
T Consensus 70 ~~---~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~ 121 (161)
T cd04117 70 YR---RAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKR 121 (161)
T ss_pred hc---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 33 3899999999876422222 234443332 257999999999997543
No 205
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=6.9e-14 Score=109.78 Aligned_cols=133 Identities=17% Similarity=0.141 Sum_probs=85.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCc---eEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL---TQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gt---T~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
-.++|+++|.+|+|||-|+-++.+..........-|+ -+.+.......++.+|||+|. +.+..+...
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ----------ERFrtit~s 77 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQ----------ERFRTITSS 77 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeecccc----------HHHhhhhHh
Confidence 3579999999999999999999987321111111121 111122222457999999995 235577778
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCc
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 238 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~ 238 (243)
|++. +|+|++|+|.+...+... ..|++.+... ++|.++|.||+|+.+..... .+..+......+.+
T Consensus 78 yYR~---ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~--~~~a~~fa~~~~~~ 147 (205)
T KOG0084|consen 78 YYRG---AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVS--TEEAQEFADELGIP 147 (205)
T ss_pred hccC---CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecC--HHHHHHHHHhcCCc
Confidence 8877 999999999886433332 2455555543 57999999999997654332 22334444444444
No 206
>PLN03108 Rab family protein; Provisional
Probab=99.54 E-value=1.3e-13 Score=112.59 Aligned_cols=113 Identities=16% Similarity=0.156 Sum_probs=69.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
..+|+++|.+|+|||||+|+|++........+..+.+........ ...+.+|||||... +..+...+
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~----------~~~~~~~~ 75 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES----------FRSITRSY 75 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHHHHH
Confidence 368999999999999999999987311111122222222222222 23578999999531 22233333
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
+. .+|++++|+|+....+... ..++..+.. ...|+++|.||+|+..
T Consensus 76 ~~---~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 76 YR---GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred hc---cCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 33 3899999999876422222 133333332 2589999999999865
No 207
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.54 E-value=6.5e-14 Score=128.35 Aligned_cols=125 Identities=20% Similarity=0.211 Sum_probs=83.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCC-CCceEEEEEE--EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~-~gtT~~~~~~--~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
..+|+++|.||+||||++|+|++. ....++.. ++||+..... ..+..+.+|||||+.++.........+...+..+
T Consensus 118 slrIvLVGKTGVGKSSLINSILGe-kvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGE-VKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcc-ccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 358999999999999999999998 44555554 5566543332 2377899999999988643322222222333334
Q ss_pred HhcccCccEEEEEEeCCC-CCChhhHHHHHHHHh-----cCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKW-GVKPRDHELISLMER-----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~-----~~~p~i~v~nK~D~~~~ 218 (243)
+... .+|+|++|+.... .....+..+++.+.. ....+|+|+|++|..++
T Consensus 197 Lsk~-gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 197 IKKN-PPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HhcC-CCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 4322 3788998886542 222245566666653 35789999999999974
No 208
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.54 E-value=3.1e-14 Score=112.53 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=71.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||++++.+.. ....+.+|+.+... ... ...+.+|||||.... ..+...
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 67 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG---YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEF----------DKLRPL 67 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhh----------cccccc
Confidence 378999999999999999998762 33445555544311 111 246789999996331 111112
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHh--cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~D~~~~ 218 (243)
+ ...+|++++|+|.....+... ..++..+.. .+.|+++|+||+|+...
T Consensus 68 ~---~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 119 (173)
T cd04130 68 C---YPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTD 119 (173)
T ss_pred c---cCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccC
Confidence 2 234899999999876533322 245555543 35899999999999753
No 209
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.54 E-value=9.4e-14 Score=105.46 Aligned_cols=100 Identities=23% Similarity=0.223 Sum_probs=67.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCC-CCCCccchHHHHHHHHHHHHHHhc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG-YGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG-~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
.+|+++|++|||||||+++|.+.+ . ....|+.+.+. =.+||||| |.+. ..+....+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~--~----~~~KTq~i~~~-----~~~IDTPGEyiE~----------~~~y~aLi~t 60 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE--I----RYKKTQAIEYY-----DNTIDTPGEYIEN----------PRFYHALIVT 60 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC--C----CcCccceeEec-----ccEEECChhheeC----------HHHHHHHHHH
Confidence 489999999999999999999973 1 11235555543 13499999 4331 1233333444
Q ss_pred ccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
..++|+|++|.|++.+.......+. .....|+|-|+||+|+.
T Consensus 61 a~dad~V~ll~dat~~~~~~pP~fa---~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 61 AQDADVVLLLQDATEPRSVFPPGFA---SMFNKPVIGVITKIDLP 102 (143)
T ss_pred HhhCCEEEEEecCCCCCccCCchhh---cccCCCEEEEEECccCc
Confidence 4569999999998865322222222 23468999999999999
No 210
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.54 E-value=7.9e-14 Score=114.83 Aligned_cols=113 Identities=15% Similarity=0.066 Sum_probs=67.9
Q ss_pred CEEEEecCCCCchhHHHHHHhccccc-ccccCCCC---ceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPG---LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~-~~vs~~~g---tT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
++|+++|.+|+|||||++++++.... ....+..+ ....+........+.+|||||... .. .. .+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~-----~~----~~---~~ 68 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM-----WT----ED---SC 68 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch-----HH----Hh---HH
Confidence 37999999999999999999765221 11111111 111122211245688999999741 00 11 11
Q ss_pred HhcccCccEEEEEEeCCCCCChh-hHHHHHHHHh----cCCcEEEEeecCCCCChH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~D~~~~~ 219 (243)
+.. .+|++++|+|.++..+.. ...++..+.. .+.|+++|+||+|+....
T Consensus 69 ~~~--~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~ 122 (221)
T cd04148 69 MQY--QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSR 122 (221)
T ss_pred hhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccc
Confidence 110 489999999987642222 1344444433 368999999999997543
No 211
>PRK13351 elongation factor G; Reviewed
Probab=99.54 E-value=1.1e-13 Score=131.56 Aligned_cols=136 Identities=19% Similarity=0.241 Sum_probs=95.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc-c---cc------cC------CCCceEEE---EEEEeCCcEEEEeCCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-V---RT------SD------KPGLTQTI---NFFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~-~---~v------s~------~~gtT~~~---~~~~~~~~~~liDTpG~~~~ 151 (243)
...+|+++|..|+|||||+++|+...+. . .+ .+ ..+.|... .+...+..+.+|||||+.+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d- 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID- 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH-
Confidence 4579999999999999999999864210 0 00 00 12333332 2333467899999999743
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHH
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 231 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~ 231 (243)
+......++.. +|++++|+|+..+.......++..+...++|+++|+||+|+... ++...++.+++.
T Consensus 86 ---------f~~~~~~~l~~---aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~-~~~~~~~~i~~~ 152 (687)
T PRK13351 86 ---------FTGEVERSLRV---LDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA-DLFKVLEDIEER 152 (687)
T ss_pred ---------HHHHHHHHHHh---CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC-CHHHHHHHHHHH
Confidence 11122233333 89999999998887777777888888889999999999999864 567777888888
Q ss_pred HhhCCCccc
Q 026112 232 LKANNSLVQ 240 (243)
Q Consensus 232 l~~~~~~~~ 240 (243)
+......++
T Consensus 153 l~~~~~~~~ 161 (687)
T PRK13351 153 FGKRPLPLQ 161 (687)
T ss_pred HCCCeEEEE
Confidence 777654443
No 212
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.54 E-value=1.1e-13 Score=124.80 Aligned_cols=140 Identities=21% Similarity=0.290 Sum_probs=94.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc-ccccCCCCceEEEEEEE----------------------------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLTQTINFFK---------------------------------- 135 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~-~~vs~~~gtT~~~~~~~---------------------------------- 135 (243)
...+|+++|.-..|||||+.+|++.... .......|.|.+.-+..
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 4578999999999999999999985310 01111223333321110
Q ss_pred --eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-CChhhHHHHHHHHhcCCc-EEEEee
Q 026112 136 --LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQTK-YQVVLT 211 (243)
Q Consensus 136 --~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-~~~~~~~~~~~l~~~~~p-~i~v~n 211 (243)
....+.++||||+. .++.........+|++++|+|+.++ ...+..+.+..+...+++ +++|+|
T Consensus 113 ~~~~~~i~~IDtPGH~-------------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlN 179 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHD-------------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQN 179 (460)
T ss_pred ccccceEeeeeCCCHH-------------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEe
Confidence 02368999999962 3444444555569999999999875 566666777777777764 889999
Q ss_pred cCCCCChHHHHHHHHHHHHHHhh---CCCccccCC
Q 026112 212 KTDTVFPIDVARRAMQIEESLKA---NNSLVQPVV 243 (243)
Q Consensus 212 K~D~~~~~~~~~~~~~l~~~l~~---~~~~~~pi~ 243 (243)
|+|+.+.....+..+.+++.+.. ...+++|||
T Consensus 180 KiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVS 214 (460)
T PTZ00327 180 KIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPIS 214 (460)
T ss_pred cccccCHHHHHHHHHHHHHHHHhhccCCCeEEEee
Confidence 99999877777777777776654 344566664
No 213
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.53 E-value=7.1e-14 Score=116.92 Aligned_cols=108 Identities=13% Similarity=0.167 Sum_probs=68.5
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|.+|+|||||++++++... ...+.+|+.+.. .+.. + ..+.+|||+|... +..+...+
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f---~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~----------~~~~~~~~ 68 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF---EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP----------FPAMRRLS 68 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC---CCCCCCChhHhEEEEEEECCEEEEEEEEECCCChh----------hhHHHHHH
Confidence 799999999999999999987632 223444443322 2222 2 4678999999642 11222222
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh------------cCCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------------SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~------------~~~p~i~v~nK~D~~~ 217 (243)
+. .+|++++|+|.+...+... ..+++.+.. .+.|+++|+||+|+..
T Consensus 69 ~~---~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 69 IL---TGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred hc---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 22 3899999999876422222 233333321 2589999999999975
No 214
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.53 E-value=1.5e-13 Score=108.45 Aligned_cols=113 Identities=17% Similarity=0.066 Sum_probs=70.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE-E--EEEE-eC--CcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I--NFFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~-~--~~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
+.++|+++|.+|+|||||++++++... . +..+.+|+.. . .... .+ ..+.++||+|.... ..+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f-~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----------~~~ 70 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSF-S-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVA----------ILL 70 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCC-C-cccCCCccCcceEEEEEEECCeEEEEEEEecCCcccc----------ccc
Confidence 467999999999999999999998732 1 1344444322 1 1111 23 35778999996431 112
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH-hcCCcEEEEeecCCCCCh
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~-~~~~p~i~v~nK~D~~~~ 218 (243)
...++. .+|++++|+|++++.+... ..+++.+. ..+.|+++|+||+|+...
T Consensus 71 ~~~~~~---~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 71 NDAELA---ACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred chhhhh---cCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccccc
Confidence 222332 3999999999876421111 13333332 236899999999999654
No 215
>PTZ00258 GTP-binding protein; Provisional
Probab=99.53 E-value=4.4e-14 Score=124.34 Aligned_cols=88 Identities=23% Similarity=0.274 Sum_probs=67.7
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--------------------CCcEEEEeCCCCC
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYG 149 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--------------------~~~~~liDTpG~~ 149 (243)
....+|+|+|.||+|||||+|+|++. . ..++++||||++++.... +..+.++||||+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~-~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQ-Q-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcC-c-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 45679999999999999999999887 4 789999999998765432 2248999999987
Q ss_pred CCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCC
Q 026112 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (243)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (243)
...... ..+..+++...+.+|++++|+|+.
T Consensus 97 ~ga~~g------~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEG------EGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcch------hHHHHHHHHHHHHCCEEEEEEeCC
Confidence 543221 224445566666699999999974
No 216
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.53 E-value=1.7e-13 Score=127.60 Aligned_cols=129 Identities=19% Similarity=0.202 Sum_probs=83.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccc-------ccc------CCCCceEEEE---EEE---e--CCcEEEEeCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-------RTS------DKPGLTQTIN---FFK---L--GTKLCLVDLPGYG 149 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~-------~vs------~~~gtT~~~~---~~~---~--~~~~~liDTpG~~ 149 (243)
...+|+++|..++|||||+++|+...... .+. ...|.|.... +.+ . +..+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 35699999999999999999998742110 011 1234444322 111 1 4568999999985
Q ss_pred CCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
+. ...+.+++.. +|++++|+|++.+....+...+..+...+.|+++|+||+|+.... .....+.+.
T Consensus 86 dF----------~~~v~~sl~~---aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~-~~~v~~ei~ 151 (600)
T PRK05433 86 DF----------SYEVSRSLAA---CEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAAD-PERVKQEIE 151 (600)
T ss_pred HH----------HHHHHHHHHH---CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCccc-HHHHHHHHH
Confidence 41 1223333333 899999999998877777666666666789999999999986432 223334444
Q ss_pred HHHh
Q 026112 230 ESLK 233 (243)
Q Consensus 230 ~~l~ 233 (243)
+.++
T Consensus 152 ~~lg 155 (600)
T PRK05433 152 DVIG 155 (600)
T ss_pred HHhC
Confidence 4443
No 217
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.52 E-value=1.6e-13 Score=108.80 Aligned_cols=109 Identities=15% Similarity=0.001 Sum_probs=69.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE-----EEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~-----~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||+.+++... ....+..|..+. ........+.+|||||... +..+...
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED----------YDRLRPL 68 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC---CCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchh----------hhhhhhh
Confidence 489999999999999999998762 122233332221 1111124688999999532 1222233
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHhc--CCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~p~i~v~nK~D~~~ 217 (243)
++. .+|++++|+|.+...+.... .++..+... +.|+++|.||+|+..
T Consensus 69 ~~~---~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 69 SYP---QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred hcC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence 333 48999999998765333332 344444332 589999999999964
No 218
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.52 E-value=1.2e-13 Score=113.05 Aligned_cols=111 Identities=23% Similarity=0.265 Sum_probs=69.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe--C--CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL--G--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~--~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
++|+++|.+|+|||||+|++++.. ..... .+.++.+... ... + ..+.+|||||... +..+..
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~-~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~----------~~~~~~ 70 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGR-FAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER----------FRSITR 70 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcchh----------HHHHHH
Confidence 589999999999999999999873 22221 1222222211 111 2 3578999999532 233334
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
.++.. +|++++|+|.++..+... ..++..+.. ...|+++|.||+|+...
T Consensus 71 ~~~~~---~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~ 124 (211)
T cd04111 71 SYYRN---SVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQ 124 (211)
T ss_pred HHhcC---CcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccc
Confidence 44443 899999999876422222 233333322 24678999999999753
No 219
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.52 E-value=8.9e-14 Score=111.16 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=71.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE-----EEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~-----~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
...+|+++|.+|+|||||++++..... ...+.+|..+ +........+.+|||+|... +..+.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f---~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~----------~~~~~ 70 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY----------YDNVR 70 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC---CCccCCceeeeeEEEEEECCEEEEEEEEECCCchh----------hHhhh
Confidence 456899999999999999999998732 2223222221 11111234688999999532 22333
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVF 217 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~ 217 (243)
..++. .+|++++|+|.+...+... ..+++.+... ..|+++|.||+|+..
T Consensus 71 ~~~~~---~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~ 123 (182)
T cd04172 71 PLSYP---DSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 123 (182)
T ss_pred hhhcC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhc
Confidence 33433 3899999999876533333 2455555432 589999999999854
No 220
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.52 E-value=2.9e-13 Score=109.84 Aligned_cols=113 Identities=18% Similarity=0.141 Sum_probs=72.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--------CCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------GTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--------~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
.+|+++|.+|+|||||++.+++........+..|.+........ ...+.+|||+|... +..+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~----------~~~l 70 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES----------VKST 70 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh----------HHHH
Confidence 37999999999999999999987321222222222222222111 23588999999632 2334
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----------------------cCCcEEEEeecCCCCCh
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----------------------SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----------------------~~~p~i~v~nK~D~~~~ 218 (243)
...|+.. +|++++|+|.+...+... ..|+..+.. ..+|+++|.||+|+.+.
T Consensus 71 ~~~~yr~---ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 71 RAVFYNQ---VNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred HHHHhCc---CCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 4445544 899999999876533332 244444432 25799999999999764
No 221
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.52 E-value=1.7e-13 Score=107.99 Aligned_cols=110 Identities=14% Similarity=0.023 Sum_probs=68.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|++|+|||||++++++.. ....+.++..+.. .... ...+.+|||||..... .....
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~ 67 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDA---FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD----------RLRPL 67 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccc----------ccccc
Confidence 379999999999999999999873 2233333333221 1112 2347799999964311 11111
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHh--cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~D~~~~ 218 (243)
+ ...+|++++|+|....-+... ..++..+.. .+.|+++|+||+|+...
T Consensus 68 ~---~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 68 S---YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDD 119 (174)
T ss_pred c---CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcC
Confidence 1 234899999999876422222 234444443 36899999999998653
No 222
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.51 E-value=8.5e-14 Score=109.34 Aligned_cols=66 Identities=24% Similarity=0.427 Sum_probs=45.4
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhH-HHHHHHHhcCCcEEEEeecC
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERSQTKYQVVLTKT 213 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l~~~~~p~i~v~nK~ 213 (243)
.+.|+||||+.+..... ..+...|+. .+|++++|+++...+...+. .+.+.+......+++|+||+
T Consensus 102 ~~~lvDtPG~~~~~~~~------~~~~~~~~~---~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEH------TEITEEYLP---KADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTT------SHHHHHHHS---TTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhh------HHHHHHhhc---cCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 79999999996632222 134555553 39999999999887665554 44445555667799999995
No 223
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.51 E-value=1.4e-13 Score=109.68 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=70.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||++++.+... ...+.+|..+.. ... ....+.+|||||... +..+...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~----------~~~~~~~ 68 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY---PETYVPTVFENYTASFEIDEQRIELSLWDTSGSPY----------YDNVRPL 68 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC---CCCcCCceEEEEEEEEEECCEEEEEEEEECCCchh----------hhhcchh
Confidence 4799999999999999999998732 223333322211 111 134688999999532 1222223
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~ 217 (243)
++. .+|++++|+|.+...+... ..++..+... ..|+++|.||+|+..
T Consensus 69 ~~~---~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~ 119 (178)
T cd04131 69 CYP---DSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRT 119 (178)
T ss_pred hcC---CCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhc
Confidence 333 4899999999876544333 2455555432 689999999999864
No 224
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.51 E-value=3.1e-13 Score=111.84 Aligned_cols=111 Identities=16% Similarity=0.129 Sum_probs=72.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceE-----EEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-----TINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~-----~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
...+|+++|.+|+|||||++.+++... ...+.+|.. .+........+.+|||+|... +..+.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F---~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~----------~~~~~ 78 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTAGLETEEQRVELSLWDTSGSPY----------YDNVR 78 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCC---CCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchh----------hHHHH
Confidence 346899999999999999999987632 222222221 111111235688999999522 23334
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVF 217 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~ 217 (243)
..|+.. +|++++|+|.+...+... ..|+..+... ..|+++|.||+|+..
T Consensus 79 ~~~~~~---ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~ 131 (232)
T cd04174 79 PLCYSD---SDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRT 131 (232)
T ss_pred HHHcCC---CcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 444443 999999999886543332 2455555432 579999999999853
No 225
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=3.3e-13 Score=120.55 Aligned_cols=113 Identities=19% Similarity=0.307 Sum_probs=93.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe------CCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~------~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
+.|.|.++|+--.|||||+..+.+.. ......-|.|+++-.+.. ...++++||||+. .|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~--Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHe-------------AF 68 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTN--VAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHE-------------AF 68 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCc--cccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHH-------------HH
Confidence 56899999999999999999999883 445556678988754432 2689999999973 34
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
...-.+...-+|++++|+|+.+++.++..+.++.++..++|+++++||+|+.+.
T Consensus 69 t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~ 122 (509)
T COG0532 69 TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEA 122 (509)
T ss_pred HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCC
Confidence 444445555689999999999999999999999999999999999999999854
No 226
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.51 E-value=5.6e-13 Score=107.87 Aligned_cols=148 Identities=21% Similarity=0.299 Sum_probs=102.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccccc-------ccCCCCceEEE------EEEEeCCcEEEEeCCCCCCCccchHH-
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR-------TSDKPGLTQTI------NFFKLGTKLCLVDLPGYGFAYAKEEV- 157 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~-------vs~~~gtT~~~------~~~~~~~~~~liDTpG~~~~~~~~~~- 157 (243)
.++|.++|.+|.|||||+|.|+... ... .-+++.||.-- ....+.-++.++|||||++....+..
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~-v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSH-VSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHH-HhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 4799999999999999999999862 221 11233333211 11112347889999999986544322
Q ss_pred ---HHHHHHHHHHHHhcc---------c--CccEEEEEEeCC-CCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHH
Q 026112 158 ---KDAWEELVKEYVSTR---------V--SLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA 222 (243)
Q Consensus 158 ---~~~~~~~~~~~~~~~---------~--~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~ 222 (243)
...+.+-..+|++.. . ..++++|.+..+ +.+.+.|.++++.|... +.++-|+-|+|.+.-++..
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-vNvvPVIakaDtlTleEr~ 203 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-VNVVPVIAKADTLTLEERS 203 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-heeeeeEeecccccHHHHH
Confidence 111122222333211 1 257788888754 46888899888888764 7899999999999999999
Q ss_pred HHHHHHHHHHhhCCCcccc
Q 026112 223 RRAMQIEESLKANNSLVQP 241 (243)
Q Consensus 223 ~~~~~l~~~l~~~~~~~~p 241 (243)
.....+++.+..++..++|
T Consensus 204 ~FkqrI~~el~~~~i~vYP 222 (336)
T KOG1547|consen 204 AFKQRIRKELEKHGIDVYP 222 (336)
T ss_pred HHHHHHHHHHHhcCccccc
Confidence 9999999999999998887
No 227
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.51 E-value=2.5e-13 Score=111.63 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=68.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE-eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
.+|+++|.+|+|||||+++++... ... ..+.+..+..... ....+.+|||||... +..+...|+.
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~-f~~--~~~Tig~~~~~~~~~~~~l~iwDt~G~e~----------~~~l~~~~~~- 66 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERR-FKD--TVSTVGGAFYLKQWGPYNISIWDTAGREQ----------FHGLGSMYCR- 66 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC-CCC--CCCccceEEEEEEeeEEEEEEEeCCCccc----------chhhHHHHhc-
Confidence 378999999999999999999873 221 1221112221111 245689999999643 1223334443
Q ss_pred ccCccEEEEEEeCCCCCChhhH--HHHHHHHh--cCCcEEEEeecCCCCC
Q 026112 172 RVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~--~~~p~i~v~nK~D~~~ 217 (243)
.+|++++|+|.+...+.... .+...... .+.|+++|.||+|+..
T Consensus 67 --~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 67 --GAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred --cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 39999999998865333322 22222222 3579999999999975
No 228
>PTZ00416 elongation factor 2; Provisional
Probab=99.50 E-value=4.4e-13 Score=129.30 Aligned_cols=129 Identities=14% Similarity=0.212 Sum_probs=90.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceE---------------EE---EEEEe----------CCcEEE
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---------------TI---NFFKL----------GTKLCL 142 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~---------------~~---~~~~~----------~~~~~l 142 (243)
...+|+++|+.++|||||+++|+.... .......|+|+ +. .+... +..+.+
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g-~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAG-IISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcC-CcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 355999999999999999999997532 11112223222 21 11111 345899
Q ss_pred EeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC------
Q 026112 143 VDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV------ 216 (243)
Q Consensus 143 iDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~------ 216 (243)
+||||+.+ +..........+|++++|+|+..++...+..+++.+...++|+++++||+|+.
T Consensus 97 iDtPG~~~-------------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~ 163 (836)
T PTZ00416 97 IDSPGHVD-------------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQL 163 (836)
T ss_pred EcCCCHHh-------------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCC
Confidence 99999853 22222333345999999999999998889899999988899999999999997
Q ss_pred Ch----HHHHHHHHHHHHHHh
Q 026112 217 FP----IDVARRAMQIEESLK 233 (243)
Q Consensus 217 ~~----~~~~~~~~~l~~~l~ 233 (243)
++ ..+.+.++.++..+.
T Consensus 164 ~~~~~~~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 164 DPEEIYQNFVKTIENVNVIIA 184 (836)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 22 345566666666555
No 229
>PLN00023 GTP-binding protein; Provisional
Probab=99.50 E-value=4.3e-13 Score=114.88 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=75.6
Q ss_pred CCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----------------CCcEEEEeCCCCCCC
Q 026112 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----------------GTKLCLVDLPGYGFA 151 (243)
Q Consensus 88 ~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----------------~~~~~liDTpG~~~~ 151 (243)
+.....+|+++|..|+|||||++.+.+........+..|.+........ ...+.||||+|...
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr- 95 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER- 95 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh-
Confidence 3445679999999999999999999987322222233333322221111 13488999999532
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---------------CCcEEEEeecCCC
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---------------QTKYQVVLTKTDT 215 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---------------~~p~i~v~nK~D~ 215 (243)
+..+...|+.. ++++++|+|.+...+... ..+++.+... .+|+++|.||+|+
T Consensus 96 ---------frsL~~~yyr~---AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL 163 (334)
T PLN00023 96 ---------YKDCRSLFYSQ---INGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADI 163 (334)
T ss_pred ---------hhhhhHHhccC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccc
Confidence 23344445444 999999999876422222 2455555432 3789999999999
Q ss_pred CCh
Q 026112 216 VFP 218 (243)
Q Consensus 216 ~~~ 218 (243)
...
T Consensus 164 ~~~ 166 (334)
T PLN00023 164 APK 166 (334)
T ss_pred ccc
Confidence 754
No 230
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.50 E-value=5.8e-14 Score=118.17 Aligned_cols=109 Identities=20% Similarity=0.188 Sum_probs=80.4
Q ss_pred CCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE---EEEeCCcEEEEeCCCCCCCccchHHHHHHH
Q 026112 86 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWE 162 (243)
Q Consensus 86 ~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~ 162 (243)
...+.+..+|+++|+|++|||||+|+|++.. ..++++++||..+. +.+.|..++++|+||+.+......
T Consensus 57 ~V~KsGda~v~lVGfPsvGKStLL~~LTnt~--seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~------ 128 (365)
T COG1163 57 AVKKSGDATVALVGFPSVGKSTLLNKLTNTK--SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGR------ 128 (365)
T ss_pred eEeccCCeEEEEEcCCCccHHHHHHHHhCCC--ccccccCceecccccceEeecCceEEEEcCcccccCcccCC------
Confidence 3455677899999999999999999999985 78999999998863 445588999999999876533221
Q ss_pred HHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcC
Q 026112 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ 203 (243)
Q Consensus 163 ~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~ 203 (243)
......++..+.||+|++|+|....... -..+.+.+...+
T Consensus 129 grG~~vlsv~R~ADlIiiVld~~~~~~~-~~~i~~ELe~~G 168 (365)
T COG1163 129 GRGRQVLSVARNADLIIIVLDVFEDPHH-RDIIERELEDVG 168 (365)
T ss_pred CCcceeeeeeccCCEEEEEEecCCChhH-HHHHHHHHHhcC
Confidence 1123345556679999999998865332 224566666554
No 231
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.50 E-value=2.6e-13 Score=107.07 Aligned_cols=111 Identities=11% Similarity=0.030 Sum_probs=68.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---EEEE--eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~---~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|++|||||||++++.+... ...+.++..+. .+.. ....+.+|||||... +..+...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF---PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED----------YDRLRPL 68 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCccccceEEEEEECCEEEEEEEEeCCCchh----------hhhcccc
Confidence 4899999999999999999998732 12222222211 1111 134678999999632 1111111
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHh--cCCcEEEEeecCCCCChH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~D~~~~~ 219 (243)
+ ...+|++++|+|.....+... ..++..+.. .+.|+++|+||+|+....
T Consensus 69 ~---~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 121 (175)
T cd01870 69 S---YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 121 (175)
T ss_pred c---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccCh
Confidence 2 234899999999775322122 224444443 368999999999987543
No 232
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.9e-13 Score=108.68 Aligned_cols=134 Identities=17% Similarity=0.108 Sum_probs=89.6
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE-------EEeCCcEEEEeCCCCCCCccchHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF-------FKLGTKLCLVDLPGYGFAYAKEEVKDAWE 162 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~-------~~~~~~~~liDTpG~~~~~~~~~~~~~~~ 162 (243)
...++|+++|.+|+|||+++-++.... ....+. +|.-+.+ ......+++|||+|.. .+.
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~---f~~~~~-sTiGIDFk~kti~l~g~~i~lQiWDtaGQe----------rf~ 75 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDS---FNTSFI-STIGIDFKIKTIELDGKKIKLQIWDTAGQE----------RFR 75 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhcc---CcCCcc-ceEEEEEEEEEEEeCCeEEEEEEEEcccch----------hHH
Confidence 456899999999999999999998873 111111 2222222 1124578899999953 356
Q ss_pred HHHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCc
Q 026112 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 238 (243)
Q Consensus 163 ~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~ 238 (243)
.+...|++. |+++++|+|.+...+... ..|++.+..+ ++|.++|.||+|+.....+ ..+.-++...+++..
T Consensus 76 ti~~sYyrg---A~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V--~~e~ge~lA~e~G~~ 150 (207)
T KOG0078|consen 76 TITTAYYRG---AMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQV--SKERGEALAREYGIK 150 (207)
T ss_pred HHHHHHHhh---cCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccc--cHHHHHHHHHHhCCe
Confidence 777888877 999999999876533333 3466666544 6899999999999875433 223344444555555
Q ss_pred cccC
Q 026112 239 VQPV 242 (243)
Q Consensus 239 ~~pi 242 (243)
++.+
T Consensus 151 F~Et 154 (207)
T KOG0078|consen 151 FFET 154 (207)
T ss_pred EEEc
Confidence 5443
No 233
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.49 E-value=6.1e-14 Score=118.39 Aligned_cols=83 Identities=27% Similarity=0.351 Sum_probs=63.2
Q ss_pred EEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---C-----------------CcEEEEeCCCCCCCccc
Q 026112 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-----------------TKLCLVDLPGYGFAYAK 154 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~-----------------~~~~liDTpG~~~~~~~ 154 (243)
|+++|.||+|||||+|+|++. + ..++++||||.+...... + ..+.++||||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~-~-~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKA-G-AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCC-C-CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 589999999999999999998 4 488999999988755321 1 14899999998754322
Q ss_pred hHHHHHHHHHHHHHHhcccCccEEEEEEeCC
Q 026112 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (243)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (243)
. ..+..+++...+.+|++++|+|+.
T Consensus 79 ~------~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 79 G------EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred h------hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 2 234455666666799999999974
No 234
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.49 E-value=3.6e-13 Score=107.08 Aligned_cols=110 Identities=17% Similarity=0.035 Sum_probs=72.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---EEEE--eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~---~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||+.++..... ...+..|..+. .... ....+.+|||+|... +..+...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f---~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~----------~~~~~~~ 68 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQED----------YNRLRPL 68 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC---CCCCCCcceeeeEEEEEECCEEEEEEEEECCCCcc----------ccccchh
Confidence 5899999999999999999997632 22222232221 1111 135688999999643 2223333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHh--cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~--~~~p~i~v~nK~D~~~~ 218 (243)
+++ .++++++|+|.++..+.... .++..+.. .+.|+++|.||+|+.+.
T Consensus 69 ~~~---~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~ 120 (176)
T cd04133 69 SYR---GADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDD 120 (176)
T ss_pred hcC---CCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccC
Confidence 443 38999999998765444432 45555543 26899999999999653
No 235
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.49 E-value=1.2e-13 Score=102.27 Aligned_cols=108 Identities=19% Similarity=0.205 Sum_probs=63.8
Q ss_pred EEEEecCCCCchhHHHHHHhccccc--ccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGV--VRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~--~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|.+|+|||||+++|++.... .......+.+........ ...+.++|++|...... .+..+..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~~-- 72 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYS------QHQFFLK-- 72 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHC------TSHHHHH--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecc------cccchhh--
Confidence 6899999999999999999998421 112233333333322222 23488999999643111 0111222
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-----cCCcEEEEeecCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTD 214 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-----~~~p~i~v~nK~D 214 (243)
.+|++++|+|.++..+-.. ..++.++.. ...|+++|.||.|
T Consensus 73 -----~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 73 -----KADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp -----HSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred -----cCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 2899999999886422222 123333332 2589999999998
No 236
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=5.4e-14 Score=110.01 Aligned_cols=133 Identities=17% Similarity=0.139 Sum_probs=87.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccccc---ccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~---vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+-++........ +-...+.|..+.......++.||||+|... ++.+...|
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQER----------y~slapMY 74 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQER----------YHSLAPMY 74 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCccc----------ccccccce
Confidence 46899999999999999988877632221 222233455554443456788999999632 46677778
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhcCCc---EEEEeecCCCCChHHHHHHHHHHHHHHhhCCCcc
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTK---YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 239 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~~p---~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~ 239 (243)
++. ++.+|+|+|.++.-+... ..+++.|+...-| +.+|.||+|+....++ ..++...+-+..+...
T Consensus 75 yRg---A~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V--~~~ea~~yAe~~gll~ 144 (200)
T KOG0092|consen 75 YRG---ANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREV--EFEEAQAYAESQGLLF 144 (200)
T ss_pred ecC---CcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccc--cHHHHHHHHHhcCCEE
Confidence 877 899999999886422222 4667777655334 6679999999874432 2234444444444443
No 237
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.49 E-value=3.7e-13 Score=108.33 Aligned_cols=110 Identities=14% Similarity=0.012 Sum_probs=70.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE-E-EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-N-FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~-~-~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||++++..... ...+..|..+. . .... ...+.+|||||... +..+...
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~----------~~~l~~~ 70 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF---PKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE----------YDRLRTL 70 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC---CcCCCCceEeeeEEEEEECCEEEEEEEEECCCchh----------hhhhhhh
Confidence 6899999999999999999987631 12222222221 1 0111 24688999999532 2333334
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHh--cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~--~~~p~i~v~nK~D~~~~ 218 (243)
|+.. +|++++|+|.+...+.... .+...+.. .+.|+++|.||+|+...
T Consensus 71 ~~~~---a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~ 122 (191)
T cd01875 71 SYPQ---TNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRND 122 (191)
T ss_pred hccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcC
Confidence 4433 8999999998765332222 24443432 36899999999999653
No 238
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.48 E-value=4.2e-13 Score=117.22 Aligned_cols=124 Identities=18% Similarity=0.235 Sum_probs=87.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc---ccc-----------cccCCCC---ceEEEEEEE-------e----CCcEEE
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW---GVV-----------RTSDKPG---LTQTINFFK-------L----GTKLCL 142 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~---~~~-----------~vs~~~g---tT~~~~~~~-------~----~~~~~l 142 (243)
+...|+++|+.|+|||||+|++.+.- ... .+++.+| +|.++.+.+ . ..++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 55789999999999999999999861 123 6788999 888887733 1 268999
Q ss_pred EeCCCCCCCccc--hHHHH------HH-----------HHHHHHHHhcccCccEEEEEE-eCC------CCCChhhHHHH
Q 026112 143 VDLPGYGFAYAK--EEVKD------AW-----------EELVKEYVSTRVSLKRVCLLI-DTK------WGVKPRDHELI 196 (243)
Q Consensus 143 iDTpG~~~~~~~--~~~~~------~~-----------~~~~~~~~~~~~~~d~v~~vv-d~~------~~~~~~~~~~~ 196 (243)
+||+||...... .+..+ .| +--.++.+. ..+++.++|. |.+ ......+..++
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~--dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQ--EHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHH--hcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 999998754211 11111 00 001222222 1388888888 875 34556678899
Q ss_pred HHHHhcCCcEEEEeecCCCC
Q 026112 197 SLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 197 ~~l~~~~~p~i~v~nK~D~~ 216 (243)
+.|+..++|+++|+||+|-.
T Consensus 174 ~eLk~~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 174 EELKELNKPFIILLNSTHPY 193 (492)
T ss_pred HHHHhcCCCEEEEEECcCCC
Confidence 99999999999999999944
No 239
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.48 E-value=4.1e-13 Score=101.62 Aligned_cols=110 Identities=21% Similarity=0.109 Sum_probs=67.4
Q ss_pred EecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 97 ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
++|.+|+|||||+|+|++... . ......+..+.. ... .+..+.++||||.... ......+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~~~~~--- 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEF-V-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERF----------RSLRRLY--- 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCc-C-CcccccchhheeeEEEEECCEEEEEEEEecCChHHH----------HhHHHHH---
Confidence 579999999999999999731 1 111111111111 111 2567999999997431 1111222
Q ss_pred ccCccEEEEEEeCCCCCChhhHH-----HHHHHHhcCCcEEEEeecCCCCChHHH
Q 026112 172 RVSLKRVCLLIDTKWGVKPRDHE-----LISLMERSQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~~~-----~~~~l~~~~~p~i~v~nK~D~~~~~~~ 221 (243)
...+|++++|+|+..+....... ........+.|+++|+||+|+......
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~ 120 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVV 120 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccch
Confidence 23489999999988753333322 112233457999999999999866443
No 240
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.48 E-value=7.7e-13 Score=100.88 Aligned_cols=112 Identities=20% Similarity=0.263 Sum_probs=77.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
..+|.++|..||||||++++|.+. ....+++..|....... ..+..+.+||.-|... .+..| +.|+..
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~-~~~~i~pt~gf~Iktl~-~~~~~L~iwDvGGq~~------lr~~W----~nYfes 83 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGE-DTDTISPTLGFQIKTLE-YKGYTLNIWDVGGQKT------LRSYW----KNYFES 83 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCC-CccccCCccceeeEEEE-ecceEEEEEEcCCcch------hHHHH----HHhhhc
Confidence 579999999999999999999998 44556665554333322 2377899999999543 33444 444444
Q ss_pred ccCccEEEEEEeCCCCCChhh--HHHHHHH---HhcCCcEEEEeecCCCCCh
Q 026112 172 RVSLKRVCLLIDTKWGVKPRD--HELISLM---ERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~--~~~~~~l---~~~~~p~i~v~nK~D~~~~ 218 (243)
.|++++|+|+++...-++ .++-+.+ +-.+.|++++.||.|+...
T Consensus 84 ---tdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 84 ---TDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA 132 (185)
T ss_pred ---cCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc
Confidence 899999999976422221 2222222 2347899999999999843
No 241
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.47 E-value=1.7e-12 Score=111.26 Aligned_cols=149 Identities=24% Similarity=0.327 Sum_probs=105.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccc---cCCCC----ceEEEEEEE-----e--CCcEEEEeCCCCCCCccchH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT---SDKPG----LTQTINFFK-----L--GTKLCLVDLPGYGFAYAKEE 156 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~v---s~~~g----tT~~~~~~~-----~--~~~~~liDTpG~~~~~~~~~ 156 (243)
-.++|+++|.+|.|||||+|.|++.. .... .+..+ .|..+.... . ...+.++|||||++......
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~-l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTS-LVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhh-ccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 45799999999999999999999972 1111 01111 222222221 1 24688999999998643322
Q ss_pred ----HHHHHHHHHHHHHhccc-----------CccEEEEEEeC-CCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH
Q 026112 157 ----VKDAWEELVKEYVSTRV-----------SLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 157 ----~~~~~~~~~~~~~~~~~-----------~~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~ 220 (243)
+-..+....+.|+.... ..|+++|.+.+ .+++.+.|.++++.+.. .+.+|-|+.|+|.+..++
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD~lT~~E 179 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKADTLTDDE 179 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeeccccCCHHH
Confidence 22223333334443211 26888888874 56799999998888876 489999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCccc-c
Q 026112 221 VARRAMQIEESLKANNSLVQ-P 241 (243)
Q Consensus 221 ~~~~~~~l~~~l~~~~~~~~-p 241 (243)
+......+++.+..++..+| |
T Consensus 180 l~~~K~~I~~~i~~~nI~vf~p 201 (373)
T COG5019 180 LAEFKERIREDLEQYNIPVFDP 201 (373)
T ss_pred HHHHHHHHHHHHHHhCCceeCC
Confidence 99999999999999998887 6
No 242
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.47 E-value=1.2e-12 Score=126.61 Aligned_cols=112 Identities=15% Similarity=0.200 Sum_probs=81.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCc---------------eEEE---EEEE----------------e
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL---------------TQTI---NFFK----------------L 136 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gt---------------T~~~---~~~~----------------~ 136 (243)
...+|+++|+.++|||||+++|+...+ .......|. |... .+.+ .
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g-~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG-IIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcC-CcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 467999999999999999999987632 111122222 2221 1111 1
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
+..+.++||||+.+ +..........+|++++|+|+..++......+++.+...++|+++++||+|+.
T Consensus 97 ~~~inliDtPGh~d-------------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVD-------------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHH-------------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 45678999999743 22222333344999999999999998888899999999999999999999998
No 243
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.47 E-value=2.9e-13 Score=105.13 Aligned_cols=135 Identities=15% Similarity=0.107 Sum_probs=88.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccccc---ccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV---VRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~---~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
....+|.++|.+|+|||||+|.+...... ..+-...+.|+++.+..--..+.+|||+|.. .++.+.-
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQE----------RFqsLg~ 76 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQE----------RFQSLGV 76 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHH----------Hhhhccc
Confidence 45679999999999999999999986311 1122234567777665334568899999942 2444444
Q ss_pred HHHhcccCccEEEEEEeCCCC--CChhhHHHHHHHHhc------CCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMERS------QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS 237 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~~------~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~ 237 (243)
.+++. +|++++|+|.... +...+..--+++... .-|+|++.||+|+.............++-+...+.
T Consensus 77 aFYRg---aDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gn 152 (210)
T KOG0394|consen 77 AFYRG---ADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGN 152 (210)
T ss_pred ceecC---CceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCC
Confidence 55555 9999999987653 222222222333322 36899999999998755444455556666666554
No 244
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.47 E-value=1.1e-12 Score=118.27 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=91.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccc-----------------------------cccCCCCceEEEEEEE---eCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------------RTSDKPGLTQTINFFK---LGT 138 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~-----------------------------~vs~~~gtT~~~~~~~---~~~ 138 (243)
+..+|+++|..++|||||+.+|+...... ......|.|.++.... .+.
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 45689999999999999999887432100 0011335676665443 256
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-CC------hhhHHHHHHHHhcCCc-EEEEe
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VK------PRDHELISLMERSQTK-YQVVL 210 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-~~------~~~~~~~~~l~~~~~p-~i~v~ 210 (243)
.+.++||||+. .+..........+|++++|+|+..+ +. .+..+.+..+...++| +++++
T Consensus 86 ~i~liDtPGh~-------------df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~v 152 (447)
T PLN00043 86 YCTVIDAPGHR-------------DFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCC 152 (447)
T ss_pred EEEEEECCCHH-------------HHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEE
Confidence 89999999973 2444444444559999999999875 21 3556667777788885 78899
Q ss_pred ecCCCCC----hHHHHHHHHHHHHHHhhCC
Q 026112 211 TKTDTVF----PIDVARRAMQIEESLKANN 236 (243)
Q Consensus 211 nK~D~~~----~~~~~~~~~~l~~~l~~~~ 236 (243)
||+|+.. ...+.+..+.++..+...+
T Consensus 153 NKmD~~~~~~~~~~~~~i~~ei~~~l~~~g 182 (447)
T PLN00043 153 NKMDATTPKYSKARYDEIVKEVSSYLKKVG 182 (447)
T ss_pred EcccCCchhhhHHHHHHHHHHHHHHHHHcC
Confidence 9999863 2345666777888777665
No 245
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.46 E-value=1.8e-13 Score=108.62 Aligned_cols=115 Identities=19% Similarity=0.272 Sum_probs=74.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
...+|+++|.+||||||+++.|... ....+.+..|..... +...+..+.++|.+|-.. ....|. .|+.
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~-~~~~~~pT~g~~~~~-i~~~~~~~~~~d~gG~~~------~~~~w~----~y~~ 80 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNG-EISETIPTIGFNIEE-IKYKGYSLTIWDLGGQES------FRPLWK----SYFQ 80 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSS-SEEEEEEESSEEEEE-EEETTEEEEEEEESSSGG------GGGGGG----GGHT
T ss_pred cEEEEEEECCCccchHHHHHHhhhc-cccccCcccccccce-eeeCcEEEEEEecccccc------ccccce----eecc
Confidence 4579999999999999999999876 323333333332221 122467899999999532 112233 3333
Q ss_pred cccCccEEEEEEeCCCCC--ChhhHHHHHHHHh---cCCcEEEEeecCCCCChHH
Q 026112 171 TRVSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~--~~~~~~~~~~l~~---~~~p~i~v~nK~D~~~~~~ 220 (243)
.+|+++||+|+++.. .+....+.+.+.. .+.|+++++||+|+.....
T Consensus 81 ---~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~ 132 (175)
T PF00025_consen 81 ---NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMS 132 (175)
T ss_dssp ---TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSST
T ss_pred ---ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcch
Confidence 389999999988531 1222233343432 3689999999999876433
No 246
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.46 E-value=1.7e-12 Score=101.04 Aligned_cols=124 Identities=17% Similarity=0.188 Sum_probs=88.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccc------cCCC---CceEEEEEEE----eCCcEEEEeCCCCCCCccchHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT------SDKP---GLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEV 157 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~v------s~~~---gtT~~~~~~~----~~~~~~liDTpG~~~~~~~~~~ 157 (243)
...+|+++|+.++||||++.+++... ...+ .... .||..+.+.. .+..+.++||||+..
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~-~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R------- 80 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKP-LVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER------- 80 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccc-cceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHH-------
Confidence 35699999999999999999999873 1111 1122 3666665543 247899999999632
Q ss_pred HHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcC-CcEEEEeecCCCCChHHHHHHHHHH
Q 026112 158 KDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTVFPIDVARRAMQI 228 (243)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~-~p~i~v~nK~D~~~~~~~~~~~~~l 228 (243)
+.-+++-+.+. ++..++++|++.+......++++++.... +|+++++||.|+.+........+.+
T Consensus 81 ---F~fm~~~l~~g---a~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l 146 (187)
T COG2229 81 ---FKFMWEILSRG---AVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREAL 146 (187)
T ss_pred ---HHHHHHHHhCC---cceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHH
Confidence 23334333333 89999999999887776678888888777 9999999999999765444443333
No 247
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.46 E-value=1.7e-13 Score=106.84 Aligned_cols=57 Identities=33% Similarity=0.588 Sum_probs=51.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~ 148 (243)
...+|+++|.||+|||||+|+|.+. ....+++++|+|++...+..+..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSK-KVCKVAPIPGETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcC-CceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence 3468899999999999999999998 56789999999999988887778999999995
No 248
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.46 E-value=1.6e-12 Score=107.02 Aligned_cols=110 Identities=14% Similarity=0.120 Sum_probs=68.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE-----EEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~-----~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||++++++... ...+.+|..+ +........+.+|||+|... +..+...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f---~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~----------~~~l~~~ 68 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY---PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSY----------YDNVRPL 68 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC---CCccCCccccceEEEEEECCEEEEEEEEeCCCcHH----------HHHHhHH
Confidence 4799999999999999999998632 2222222211 11111234688999999532 2222233
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHh--cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~D~~~~ 218 (243)
++. .+|++++|+|.+...+... ..+...+.. .+.|+++|.||+|+...
T Consensus 69 ~~~---~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 69 AYP---DSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTD 120 (222)
T ss_pred hcc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccc
Confidence 333 3999999999876522222 123333322 36899999999999653
No 249
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.44 E-value=2.4e-13 Score=107.60 Aligned_cols=57 Identities=33% Similarity=0.545 Sum_probs=52.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~ 148 (243)
...+|+++|.||+|||||+|+|++. ....+++.||+|++.+.+..+..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~-~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRS-RACNVGATPGVTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCc-ccceecCCCCeEcceEEEEeCCCEEEEECcCC
Confidence 4579999999999999999999998 56789999999999988888888999999995
No 250
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=4e-12 Score=109.68 Aligned_cols=148 Identities=21% Similarity=0.300 Sum_probs=104.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccccc------ccCCCCceEEEEEEE-------eCCcEEEEeCCCCCCCccch--
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR------TSDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYAKE-- 155 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~------vs~~~gtT~~~~~~~-------~~~~~~liDTpG~~~~~~~~-- 155 (243)
-.+.+.++|.+|.|||||+|.|+... ... .+..+..|..+.... ....++++||||+++.....
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~-l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTD-LSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhh-ccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 45799999999999999999999872 111 111221232222211 12468899999999864332
Q ss_pred --HHHHHHHHHHHHHHhccc----------CccEEEEEEeC-CCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHH
Q 026112 156 --EVKDAWEELVKEYVSTRV----------SLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA 222 (243)
Q Consensus 156 --~~~~~~~~~~~~~~~~~~----------~~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~ 222 (243)
.+.+.+..-.+.|+..-. ..|+++|.+.. .+++.+.|.+.++.+.. .+++|-|+.|+|.+.++++.
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~lT~~El~ 177 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTLTKDELN 177 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeeccccCCHHHHH
Confidence 222333334445554221 36888888875 45699999888887765 58999999999999999999
Q ss_pred HHHHHHHHHHhhCCCccc
Q 026112 223 RRAMQIEESLKANNSLVQ 240 (243)
Q Consensus 223 ~~~~~l~~~l~~~~~~~~ 240 (243)
..+..+++.+..++..+|
T Consensus 178 ~~K~~I~~~i~~~nI~vf 195 (366)
T KOG2655|consen 178 QFKKRIRQDIEEHNIKVF 195 (366)
T ss_pred HHHHHHHHHHHHcCccee
Confidence 999999999999988776
No 251
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.43 E-value=1.1e-12 Score=102.53 Aligned_cols=105 Identities=15% Similarity=0.121 Sum_probs=64.7
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCC-ceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~g-tT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (243)
+|+++|.+|+|||||++.++.........+..+ .+..+........+.+|||+|... . .++.
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----------~----~~~~-- 64 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----------A----QFAS-- 64 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----------h----hHHh--
Confidence 799999999999999998876521111111111 111111111124588999999732 1 1222
Q ss_pred cCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCC
Q 026112 173 VSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTV 216 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~ 216 (243)
.+|++++|+|.+...+... ..++..+.. ...|+++|.||+|+.
T Consensus 65 -~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 65 -WVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred -cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 3899999999886533333 344555543 247999999999985
No 252
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.42 E-value=1.7e-13 Score=120.64 Aligned_cols=138 Identities=18% Similarity=0.235 Sum_probs=91.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc----ccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~----~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
+..|+++|.+|+|||||+|+|++.. +...++..||||++...+..+..+.++||||+.... .+...+..-...
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~~---~~~~~l~~~~l~ 230 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINSH---QMAHYLDKKDLK 230 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCChh---HhhhhcCHHHHh
Confidence 3589999999999999999999853 235789999999999988877778999999997531 111111111112
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l 232 (243)
++........+.+.+|..+.+.......++++......+.+.++|.+........+..+.+++.+
T Consensus 231 ~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~~ 295 (360)
T TIGR03597 231 YITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHRTKLENADELYNKHL 295 (360)
T ss_pred hcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEeechhhhHHHHHhhc
Confidence 33334457778888887664433343334444444566788888888775544444444445443
No 253
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=2.9e-12 Score=100.51 Aligned_cols=115 Identities=18% Similarity=0.174 Sum_probs=77.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE---EEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~---~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
..+|+++|..++||||||++++-...-......-| .|.. ++.. ...+.+|||+|. +.+..++.
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIG--iDFlskt~~l~d~~vrLQlWDTAGQ----------ERFrslip 89 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIG--IDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLIP 89 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhcccccceee--eEEEEEEEEEcCcEEEEEEEecccH----------HHHhhhhh
Confidence 47999999999999999999987631111222111 1221 1112 457889999994 34677888
Q ss_pred HHHhcccCccEEEEEEeCCCCCChh-hHHHHHHHHhc----CCcEEEEeecCCCCChHHH
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS----QTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~~----~~p~i~v~nK~D~~~~~~~ 221 (243)
.|++. +.++++|+|.++..+.. ...|++.+... ++-+++|.||.||.+..+.
T Consensus 90 sY~Rd---s~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv 146 (221)
T KOG0094|consen 90 SYIRD---SSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV 146 (221)
T ss_pred hhccC---CeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhh
Confidence 88876 89999999987643322 23555555433 2558899999999988654
No 254
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.41 E-value=6.8e-12 Score=102.64 Aligned_cols=114 Identities=18% Similarity=0.105 Sum_probs=75.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.+|+++|.+|||||||+++|.+... .........+........ ...+.+|||+|..+ +..+...|
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~----------~~~~~~~y 74 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF-PEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE----------YRSLRPEY 74 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC-cccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHH----------HHHHHHHH
Confidence 6999999999999999999999831 211111111222222222 23489999999632 33455555
Q ss_pred HhcccCccEEEEEEeCCC--CCChhhHHHHHHHHhc---CCcEEEEeecCCCCChHH
Q 026112 169 VSTRVSLKRVCLLIDTKW--GVKPRDHELISLMERS---QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~--~~~~~~~~~~~~l~~~---~~p~i~v~nK~D~~~~~~ 220 (243)
... ++++++++|... ........+...+... ..|+++|.||+|+.....
T Consensus 75 ~~~---~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~ 128 (219)
T COG1100 75 YRG---ANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQS 128 (219)
T ss_pred hcC---CCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchh
Confidence 555 899999999764 2333335666666553 489999999999997653
No 255
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=3.9e-13 Score=106.63 Aligned_cols=113 Identities=21% Similarity=0.169 Sum_probs=80.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccC----CCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD----KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~----~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
-.++|+++|.+|+|||-|+.+++..+. ..-+. ..+.|+.+....--.+..||||+|.. .++.+..
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF-~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQE----------RyrAitS 81 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEF-SLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQE----------RYRAITS 81 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhccccc-CcccccceeEEEEeeceeecCcEEEEeeecccchh----------hhccccc
Confidence 357899999999999999999998742 22111 11233333333234567899999952 3456677
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVF 217 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~ 217 (243)
.|++. +.+.++|+|.+...+.+. ..|++.|+.+ ++++++|.||+||..
T Consensus 82 aYYrg---AvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 82 AYYRG---AVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred hhhcc---cceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 77777 899999999876544433 4677777654 578999999999975
No 256
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=5.1e-12 Score=109.77 Aligned_cols=129 Identities=20% Similarity=0.291 Sum_probs=89.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccc-----------------------------cccccCCCCceEEEEEEE---eCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----------------------------VVRTSDKPGLTQTINFFK---LGT 138 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~-----------------------------~~~vs~~~gtT~~~~~~~---~~~ 138 (243)
...+++++|+..+|||||+-.|+-... ....-...|.|.+..... ...
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 456899999999999999988873210 011122456777764332 356
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-------CChhhHHHHHHHHhcCC-cEEEEe
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQT-KYQVVL 210 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~~~~~~~~~~~l~~~~~-p~i~v~ 210 (243)
.+.++|+||++ .++...+.....+|+.++|||++.+ ...+..+.+-+..-+++ .+++++
T Consensus 86 ~~tIiDaPGHr-------------dFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVav 152 (428)
T COG5256 86 NFTIIDAPGHR-------------DFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAV 152 (428)
T ss_pred eEEEeeCCchH-------------HHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEE
Confidence 69999999974 3666777777779999999999876 55566676666666776 489999
Q ss_pred ecCCCCC--hHHHHHHHHHHHHHH
Q 026112 211 TKTDTVF--PIDVARRAMQIEESL 232 (243)
Q Consensus 211 nK~D~~~--~~~~~~~~~~l~~~l 232 (243)
||+|+++ ...+.+....+...+
T Consensus 153 NKMD~v~wde~rf~ei~~~v~~l~ 176 (428)
T COG5256 153 NKMDLVSWDEERFEEIVSEVSKLL 176 (428)
T ss_pred EcccccccCHHHHHHHHHHHHHHH
Confidence 9999984 333444444444433
No 257
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=6.4e-12 Score=107.47 Aligned_cols=141 Identities=21% Similarity=0.290 Sum_probs=97.8
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccc-cccccCCCCceEEEEEEEe-------C------------------------
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFKL-------G------------------------ 137 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~-~~~vs~~~gtT~~~~~~~~-------~------------------------ 137 (243)
...|.|+++|..+.||||+|+.|+..+. ...+++.|.|.+-+..-+. |
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 4689999999999999999999998741 1234444433222211110 0
Q ss_pred -----------CcEEEEeCCCCCCCccchHHHHHH--HHHHHHHHhcccCccEEEEEEeCCC-CCChhhHHHHHHHHhcC
Q 026112 138 -----------TKLCLVDLPGYGFAYAKEEVKDAW--EELVKEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERSQ 203 (243)
Q Consensus 138 -----------~~~~liDTpG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~~~ 203 (243)
.++.+|||||+.+...+ .+++.+ ...+.-+... +|.|++++|+.. .++++..++++.++...
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQ-risR~ydF~~v~~WFaeR---~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQ-RISRGYDFTGVLEWFAER---VDRIILLFDAHKLDISDEFKRVIDALKGHE 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchh-cccccCChHHHHHHHHHh---ccEEEEEechhhccccHHHHHHHHHhhCCc
Confidence 27999999998764322 122222 2333333333 999999999754 46777889999999888
Q ss_pred CcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 204 TKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 204 ~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
..+-+|+||+|.++++++.+..-.+.=.++.
T Consensus 212 dkiRVVLNKADqVdtqqLmRVyGALmWslgk 242 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDTQQLMRVYGALMWSLGK 242 (532)
T ss_pred ceeEEEeccccccCHHHHHHHHHHHHHhhhh
Confidence 9999999999999999988877666554444
No 258
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.38 E-value=2.5e-12 Score=114.15 Aligned_cols=85 Identities=22% Similarity=0.213 Sum_probs=64.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---------------------------eCCcEEEEeC
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------------------LGTKLCLVDL 145 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---------------------------~~~~~~liDT 145 (243)
++|+++|.||+|||||+|+|++.. ..+++++++|.++.... ....+.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~--~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD--VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc--ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 589999999999999999999983 56789999998876532 1135789999
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCC
Q 026112 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (243)
Q Consensus 146 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (243)
||+....... ..+..+++...+.+|++++|+|+.
T Consensus 80 aGl~~ga~~g------~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEG------RGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccch------hhHHHHHHHHHHHCCEEEEEEeCC
Confidence 9986532111 234455666666699999999986
No 259
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.38 E-value=3.7e-12 Score=103.30 Aligned_cols=107 Identities=13% Similarity=0.071 Sum_probs=67.1
Q ss_pred ecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccC
Q 026112 98 AGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS 174 (243)
Q Consensus 98 vG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (243)
+|.+|||||||+++++.........+..|.+....... ....+.+|||||... +..+...|+..
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~----------~~~l~~~~~~~--- 67 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK----------FGGLRDGYYIQ--- 67 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchh----------hhhhhHHHhcC---
Confidence 69999999999999986522111222222222212111 135788999999632 23344445544
Q ss_pred ccEEEEEEeCCCCCChhh-HHHHHHHHh--cCCcEEEEeecCCCCC
Q 026112 175 LKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 175 ~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~p~i~v~nK~D~~~ 217 (243)
+|++++|+|.+...+... ..++..+.. .+.|+++|.||+|+..
T Consensus 68 ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~ 113 (200)
T smart00176 68 GQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKD 113 (200)
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 899999999886533222 245555544 3689999999999853
No 260
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=3.7e-12 Score=111.02 Aligned_cols=135 Identities=21% Similarity=0.294 Sum_probs=99.5
Q ss_pred CEEEEecCCCCchhHHHHHHhccccccc---------------ccC------CCC---ceEEEEEEEeCCcEEEEeCCCC
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVR---------------TSD------KPG---LTQTINFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~---------------vs~------~~g---tT~~~~~~~~~~~~~liDTpG~ 148 (243)
...+||-.|.||||||...|+=--. ++ .|+ ..| ||.-+++.+.+..+.|+||||+
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGg-aIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGG-AIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcc-hhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 3789999999999999987763211 11 000 111 3334466677889999999998
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHH
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 228 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l 228 (243)
.+. .++.|..+ -.+|..++|+|+..++.++...+++.++..++|++-.+||.|.... +-.+.++.+
T Consensus 92 eDF-----SEDTYRtL--------tAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~r-dP~ELLdEi 157 (528)
T COG4108 92 EDF-----SEDTYRTL--------TAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGR-DPLELLDEI 157 (528)
T ss_pred ccc-----chhHHHHH--------HhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccC-ChHHHHHHH
Confidence 652 12233333 3389999999999999999999999999999999999999998754 445677888
Q ss_pred HHHHhhCCCccc-cC
Q 026112 229 EESLKANNSLVQ-PV 242 (243)
Q Consensus 229 ~~~l~~~~~~~~-pi 242 (243)
++.|+-...++. ||
T Consensus 158 E~~L~i~~~PitWPI 172 (528)
T COG4108 158 EEELGIQCAPITWPI 172 (528)
T ss_pred HHHhCcceecccccc
Confidence 888887766665 54
No 261
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.37 E-value=3.2e-12 Score=121.82 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=78.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc--------ccccC------CCCceEEEEE-------EEeCCcEEEEeCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV--------VRTSD------KPGLTQTINF-------FKLGTKLCLVDLPGYG 149 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~--------~~vs~------~~gtT~~~~~-------~~~~~~~~liDTpG~~ 149 (243)
...+|+++|..++|||||+++|+..... ....+ ..|+|.+... ...+..+.++||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 3569999999999999999999753110 00011 1334443321 1235679999999986
Q ss_pred CCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
+.. ......+ ..+|++++|+|+..++...+..+++.+...+.|+++|+||+|...
T Consensus 98 ~f~----------~~~~~al---~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFG----------GDVTRAM---RAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLI 152 (720)
T ss_pred ccH----------HHHHHHH---HhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhccc
Confidence 411 1112222 239999999999888888888888877777899999999999873
No 262
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.36 E-value=1e-11 Score=118.66 Aligned_cols=112 Identities=18% Similarity=0.277 Sum_probs=77.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCC---------------CceEEEE---EEE----eCCcEEEEeCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP---------------GLTQTIN---FFK----LGTKLCLVDLPGY 148 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~---------------gtT~~~~---~~~----~~~~~~liDTpG~ 148 (243)
...+|+++|+.++|||||+.+|+...+.. ..... |.|.+.. +.. .+..+.++||||+
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i-~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMI-SEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCc-chhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 45699999999999999999998653211 11111 2232221 111 2456899999998
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
.+. ...+...+ ..+|++++|+|+..++......++..+...+.|.++++||+|+.
T Consensus 98 ~df----------~~~~~~~l---~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDF----------GGDVTRAM---RAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred cCh----------HHHHHHHH---HhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh
Confidence 651 11122222 33899999999998888888888888777788999999999986
No 263
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1e-11 Score=96.80 Aligned_cols=112 Identities=19% Similarity=0.179 Sum_probs=77.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE-------EEeCCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF-------FKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~-------~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
.+++.++|.+|+|||.|+-.++.+.. ..+.+ .|.-+.+ ..-..++.+|||+|.. .+...
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF-~~~hd---~TiGvefg~r~~~id~k~IKlqiwDtaGqe----------~frsv 71 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRF-QPVHD---LTIGVEFGARMVTIDGKQIKLQIWDTAGQE----------SFRSV 71 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCc-ccccc---ceeeeeeceeEEEEcCceEEEEEEecCCcH----------HHHHH
Confidence 47899999999999999999999832 22222 3333322 2224689999999963 34567
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCChHH
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~~~ 220 (243)
.+.|++. +-++++|+|.....+... ..|+..++++ +.-++++.||+||...++
T Consensus 72 ~~syYr~---a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~ 128 (216)
T KOG0098|consen 72 TRSYYRG---AAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARRE 128 (216)
T ss_pred HHHHhcc---CcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcccc
Confidence 7778877 788999999876533333 2344444443 466899999999986543
No 264
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.35 E-value=5.5e-12 Score=98.12 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=67.8
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCce-EEEE--EEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT-~~~~--~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
+|+++|.+|+|||||++++.+... ...+..|. .+.. ... ....+.+|||+|... +..+...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----------~~~~~~~ 67 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF---PENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQER----------FDSLRDI 67 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST---TSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGG----------GHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc---cccccccccccccccccccccccccccccccccccc----------ccccccc
Confidence 689999999999999999998731 22222222 2221 111 234688999999532 1122223
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|.....+-.. ..++..+... ..|+++|.||+|+...
T Consensus 68 ~~~~---~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~ 119 (162)
T PF00071_consen 68 FYRN---SDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDE 119 (162)
T ss_dssp HHTT---ESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGG
T ss_pred cccc---cccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence 3333 899999999875321111 2444444322 4799999999998863
No 265
>PRK12740 elongation factor G; Reviewed
Probab=99.35 E-value=1.1e-11 Score=117.60 Aligned_cols=123 Identities=25% Similarity=0.316 Sum_probs=83.4
Q ss_pred ecCCCCchhHHHHHHhcccccc-c---------ccC------CCCceEEE---EEEEeCCcEEEEeCCCCCCCccchHHH
Q 026112 98 AGRSNVGKSSMLNALTRQWGVV-R---------TSD------KPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVK 158 (243)
Q Consensus 98 vG~~naGKSSLin~L~~~~~~~-~---------vs~------~~gtT~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~ 158 (243)
+|++|+|||||+++|+...... . +.+ ..|.|... .+...+..+.+|||||+.+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~-------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD-------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH--------
Confidence 5999999999999997653210 0 111 13344433 2233477899999999743
Q ss_pred HHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
+......++. .+|++++|+|++.+.......++..+...++|+++|+||+|+... ......+.+++.+..
T Consensus 73 --~~~~~~~~l~---~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~-~~~~~~~~l~~~l~~ 142 (668)
T PRK12740 73 --FTGEVERALR---VLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGA-DFFRVLAQLQEKLGA 142 (668)
T ss_pred --HHHHHHHHHH---HhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCC-CHHHHHHHHHHHHCC
Confidence 1111222222 389999999998887777777778888889999999999999853 344556666666654
No 266
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.33 E-value=2.9e-11 Score=98.94 Aligned_cols=114 Identities=13% Similarity=0.042 Sum_probs=67.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
...+|+++|++|||||||+++++.........+..+.......+. ....+.+|||||... +..+...
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~----------~~~~~~~ 77 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK----------FGGLRDG 77 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchh----------hhhhhHH
Confidence 457999999999999999976554322122222223222221111 135788999999532 1222233
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh--cCCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~p~i~v~nK~D~~~ 217 (243)
++.. ++++++|+|.+...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 78 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 78 YYIK---GQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKD 127 (215)
T ss_pred Hhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 3332 799999999876432222 123333322 2589999999999864
No 267
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.33 E-value=1.9e-12 Score=112.12 Aligned_cols=60 Identities=35% Similarity=0.557 Sum_probs=55.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~ 151 (243)
...+++++|.||+|||||||+|++. ..+.+++.||+|+..+....+..+.++||||+.-.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k-~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~~ 190 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGK-KVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIPP 190 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcc-cceeeCCCCceecceEEEEcCCCeEEecCCCcCCC
Confidence 3468999999999999999999999 66899999999999999999999999999998754
No 268
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.33 E-value=6.5e-12 Score=101.48 Aligned_cols=110 Identities=13% Similarity=-0.032 Sum_probs=67.0
Q ss_pred CEEEEecCCCCchhHHHH-HHhcccc--cccccCCCCceE--E-EE------------EEEeCCcEEEEeCCCCCCCccc
Q 026112 93 PEIAFAGRSNVGKSSMLN-ALTRQWG--VVRTSDKPGLTQ--T-IN------------FFKLGTKLCLVDLPGYGFAYAK 154 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin-~L~~~~~--~~~vs~~~gtT~--~-~~------------~~~~~~~~~liDTpG~~~~~~~ 154 (243)
.+|+++|.+|+|||||++ .+.+... ......+.+|.. + .. .......+.+|||||...
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~---- 78 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD---- 78 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh----
Confidence 589999999999999996 5544310 011222223321 1 10 001135788999999632
Q ss_pred hHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHh--cCCcEEEEeecCCCCC
Q 026112 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~--~~~p~i~v~nK~D~~~ 217 (243)
.+...++ ..+|++++|+|.+...+.... .++..+.. .+.|+++|.||+|+..
T Consensus 79 --------~~~~~~~---~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 79 --------KDRRFAY---GRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY 134 (195)
T ss_pred --------hhhcccC---CCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 0111122 349999999998765433332 35555543 2589999999999864
No 269
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.33 E-value=1.9e-11 Score=103.64 Aligned_cols=87 Identities=23% Similarity=0.261 Sum_probs=68.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--------------------CCcEEEEeCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGF 150 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--------------------~~~~~liDTpG~~~ 150 (243)
+.++++|||.||+|||||+|+|+.. . +.+.++|+||.+++.... ...+.++|.+|+..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~-~-a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKS-K-AGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcC-C-CCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 5679999999999999999999998 4 459999999999865432 24789999999865
Q ss_pred CccchHHHHHHHHHHHHHHhcccCccEEEEEEeCC
Q 026112 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (243)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (243)
..+.. +.+...|++..+.+|.+++|+++.
T Consensus 97 GAs~G------~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 97 GASAG------EGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred CcccC------cCchHHHHHhhhhccceeEEEEec
Confidence 43222 245667777777899999999864
No 270
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=3.4e-11 Score=90.57 Aligned_cols=114 Identities=19% Similarity=0.217 Sum_probs=80.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEE-----eCCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK-----LGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~-----~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
.++|+++|..|+|||.|+..++..- -.+..|.|..+ .+.. ...++.+|||+|. +.+..+
T Consensus 7 lfkivlvgnagvgktclvrrftqgl----fppgqgatigvdfmiktvev~gekiklqiwdtagq----------erfrsi 72 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGL----FPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQ----------ERFRSI 72 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccC----CCCCCCceeeeeEEEEEEEECCeEEEEEEeeccch----------HHHHHH
Confidence 4799999999999999999998762 12223334332 2221 2457899999994 235667
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCChHHHH
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVA 222 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~~~~~ 222 (243)
...|++. ++.+++|.|.+...+... .+|+..+++. .+--++|.||+|+.+..++.
T Consensus 73 tqsyyrs---ahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp 131 (213)
T KOG0095|consen 73 TQSYYRS---AHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVP 131 (213)
T ss_pred HHHHhhh---cceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhh
Confidence 7777776 899999999887655444 3677776654 34568999999998765543
No 271
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.32 E-value=3.1e-11 Score=99.53 Aligned_cols=130 Identities=15% Similarity=0.139 Sum_probs=73.1
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
+|+++|+.++||||..+.+++.. .+.-...-+.|.++..... ...+.+||+||........ +..-.+...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~-~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~-----~~~~~~~if 74 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKY-SPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY-----FNSQREEIF 74 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT-----HTCCHHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCC-CchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc-----ccccHHHHH
Confidence 68999999999999999999873 2333445566666654433 4589999999975421110 000011111
Q ss_pred hcccCccEEEEEEeCCCCCChhhH-H---HHHHHHhc--CCcEEEEeecCCCCChHHHHHHHHHHHHHH
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDH-E---LISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~-~---~~~~l~~~--~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l 232 (243)
..+.+++||+|+.......+. . .++.+... +..+-+.++|+|+..++........+.+.+
T Consensus 75 ---~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i 140 (232)
T PF04670_consen 75 ---SNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRI 140 (232)
T ss_dssp ---CTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHH
T ss_pred ---hccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHH
Confidence 238999999998733233332 2 22333222 577999999999998876655554444433
No 272
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.31 E-value=1.7e-11 Score=98.16 Aligned_cols=108 Identities=15% Similarity=0.013 Sum_probs=65.4
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE-E-EEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-N-FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~-~-~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|++|+|||||++++..... . .....++.+. . ... ....+.++||||..... .....+
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----------~~~~~~ 69 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF-P--EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYE----------RLRPLS 69 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-C--cccCCcccceEEEEEEECCEEEEEEEEECCCChhcc----------ccchhh
Confidence 799999999999999999985522 1 1111222211 1 111 12457899999964311 111111
Q ss_pred HhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~ 217 (243)
+ ..+|++++++|.+...+... ..++..+... ..|+++|.||+|+..
T Consensus 70 ~---~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 70 Y---SKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQ 119 (187)
T ss_pred c---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhh
Confidence 2 34899999999765422222 2355555432 689999999999853
No 273
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=1.8e-11 Score=97.53 Aligned_cols=129 Identities=21% Similarity=0.289 Sum_probs=79.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccc-ccccCCCCceEEEEEEEe-CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~-~~vs~~~gtT~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+.|+++|.+++|||+|+-.|...... ..+|-.| ..-.+.. ...+.+||.||+.. . ..-+..|+
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep----n~a~~r~gs~~~~LVD~PGH~r------l----R~kl~e~~ 103 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP----NEATYRLGSENVTLVDLPGHSR------L----RRKLLEYL 103 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeeecc----ceeeEeecCcceEEEeCCCcHH------H----HHHHHHHc
Confidence 368999999999999999888765211 1111111 1112222 44579999999732 1 22233444
Q ss_pred hcccCccEEEEEEeCCCC---CChhhHHHHHHHHh-----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 170 STRVSLKRVCLLIDTKWG---VKPRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~---~~~~~~~~~~~l~~-----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
.+...+-.|++|+|+..- .......++..+.. ...|+++++||.|+..........+.++++++.
T Consensus 104 ~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~ 176 (238)
T KOG0090|consen 104 KHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHK 176 (238)
T ss_pred cccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHH
Confidence 444568899999997642 11222333344432 357899999999999776666666666665543
No 274
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.30 E-value=7.5e-12 Score=107.03 Aligned_cols=61 Identities=33% Similarity=0.573 Sum_probs=55.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~ 152 (243)
...+|+++|.||+|||||+|+|++. ....+++.+|+|++.+....+..+.++||||+..+.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGK-KIAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWPK 180 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC-CccccCCCCCeEEEEEEEEeCCcEEEEECCCcCCCC
Confidence 4579999999999999999999998 557899999999999988888889999999987653
No 275
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.30 E-value=6.6e-12 Score=97.68 Aligned_cols=58 Identities=34% Similarity=0.487 Sum_probs=51.6
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCC
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~ 148 (243)
....+++++|.||+|||||+|+|++. ....++..++||++......+..+.++||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNK-LKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcc-ccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 35689999999999999999999998 44668899999999988887888999999996
No 276
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.29 E-value=5.3e-12 Score=101.46 Aligned_cols=57 Identities=35% Similarity=0.475 Sum_probs=49.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccc-------cccccCCCCceEEEEEEEeCCcEEEEeCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWG-------VVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~-------~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~ 148 (243)
...++++|.+|+|||||+|+|++... ...++..+|||++......+..+.++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence 46899999999999999999998531 2467889999999998887768999999996
No 277
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3.3e-11 Score=113.16 Aligned_cols=137 Identities=21% Similarity=0.285 Sum_probs=98.5
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccccc-ccccC---------------CCCceEEE---EEEEeC-CcEEEEeCCCCC
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSD---------------KPGLTQTI---NFFKLG-TKLCLVDLPGYG 149 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~-~~vs~---------------~~gtT~~~---~~~~~~-~~~~liDTpG~~ 149 (243)
.+..+|+++|+-.+|||||..+|+-.... ...+. ..|.|... ...+.+ ..+.+|||||+.
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 35679999999999999999888754211 11111 12233332 333444 899999999986
Q ss_pred CCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
+. ..-+.+.++ -+|+.++|+|+..++.++...+.+++...++|.++++||+|.... ++....+.+.
T Consensus 88 DF----------t~EV~rslr---vlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a-~~~~~~~~l~ 153 (697)
T COG0480 88 DF----------TIEVERSLR---VLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGA-DFYLVVEQLK 153 (697)
T ss_pred cc----------HHHHHHHHH---hhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccccc-ChhhhHHHHH
Confidence 62 111222222 289999999999999999999999999999999999999999865 5666777788
Q ss_pred HHHhhCCCccc
Q 026112 230 ESLKANNSLVQ 240 (243)
Q Consensus 230 ~~l~~~~~~~~ 240 (243)
..+...-..++
T Consensus 154 ~~l~~~~~~v~ 164 (697)
T COG0480 154 ERLGANPVPVQ 164 (697)
T ss_pred HHhCCCceeee
Confidence 88777555544
No 278
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.28 E-value=1.9e-11 Score=91.78 Aligned_cols=110 Identities=17% Similarity=0.191 Sum_probs=75.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCC-CceEEEEEEEe-----CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINFFKL-----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~-gtT~~~~~~~~-----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
+..+|+|.+|+|||||+-.+.... ....+. .+-.|..+... ...+.||||+|. +.+..+..
T Consensus 9 fkllIigDsgVGKssLl~rF~ddt---Fs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq----------ErFrtits 75 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDT---FSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ----------ERFRTITS 75 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcc---cccceEEEeeeeEEEEEeecCCcEEEEEEeecccH----------HHHHHHHH
Confidence 567899999999999999888763 112221 11123332222 346889999993 34567777
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc--CCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~p~i~v~nK~D~~~~ 218 (243)
.|++. .+++++|+|.+.+.+... ..|++.++.. .+|-++|.||.|..+.
T Consensus 76 tyyrg---thgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~R 127 (198)
T KOG0079|consen 76 TYYRG---THGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPER 127 (198)
T ss_pred HHccC---CceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccc
Confidence 77776 899999999887643333 4666666544 4788999999998754
No 279
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.27 E-value=8.9e-12 Score=95.44 Aligned_cols=55 Identities=38% Similarity=0.536 Sum_probs=49.6
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCC
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYG 149 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~ 149 (243)
+++++|.+|+|||||+|+|++. ....++..+|+|++......+..+.++||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK-KKVSVSATPGKTKHFQTIFLTPTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-CceeeCCCCCcccceEEEEeCCCEEEEECCCcC
Confidence 8999999999999999999998 445788999999998888777789999999984
No 280
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=3.3e-11 Score=92.87 Aligned_cols=139 Identities=21% Similarity=0.244 Sum_probs=88.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc----ccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~----~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (243)
....|+|+|..|||||||+.++-... ....++.+. +|.-.+..+ .+..+.+||.-|. +..+ +
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~-~tvgLnig~i~v~~~~l~fwdlgGQ------e~lr----S 84 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKIT-PTVGLNIGTIEVCNAPLSFWDLGGQ------ESLR----S 84 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHee-cccceeecceeeccceeEEEEcCCh------HHHH----H
Confidence 45689999999999999998876642 111112111 122222222 1567899999994 3333 4
Q ss_pred HHHHHHhcccCccEEEEEEeCCCC--CChhhH---HHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHH--HHHhhCC
Q 026112 164 LVKEYVSTRVSLKRVCLLIDTKWG--VKPRDH---ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE--ESLKANN 236 (243)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~--~~~~~~---~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~--~~l~~~~ 236 (243)
+...|+.. ++++++|||+.++ +..... .+...=...+.|+++.+||.|+-...+..+....+. +.+....
T Consensus 85 lw~~yY~~---~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd 161 (197)
T KOG0076|consen 85 LWKKYYWL---AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRD 161 (197)
T ss_pred HHHHHHHH---hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCcc
Confidence 44555555 9999999999873 222221 222222334899999999999987766665554444 5666666
Q ss_pred CccccCC
Q 026112 237 SLVQPVV 243 (243)
Q Consensus 237 ~~~~pi~ 243 (243)
.+++||+
T Consensus 162 ~~~~pvS 168 (197)
T KOG0076|consen 162 NPFQPVS 168 (197)
T ss_pred Cccccch
Confidence 7777875
No 281
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.25 E-value=3.5e-11 Score=89.77 Aligned_cols=118 Identities=19% Similarity=0.274 Sum_probs=82.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
+..+|+++|-.|+|||||+..|.+. +...+.+..|.......+....++.+||.-|.+. ++-.|. .|+.
T Consensus 16 rEirilllGldnAGKTT~LKqL~sE-D~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~------IRpyWs----NYye 84 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSE-DPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRG------IRPYWS----NYYE 84 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccC-ChhhccccCCcceEEEeecCcEEEEEEecCCccc------cchhhh----hhhh
Confidence 4579999999999999999999998 5566666666554444444457899999999543 333444 4444
Q ss_pred cccCccEEEEEEeCCCC--CChhhHHHHHHHH---hcCCcEEEEeecCCCCChHHHH
Q 026112 171 TRVSLKRVCLLIDTKWG--VKPRDHELISLME---RSQTKYQVVLTKTDTVFPIDVA 222 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~---~~~~p~i~v~nK~D~~~~~~~~ 222 (243)
. .|.++||+|+.+. +.+...++.+.+. -..+|+.+..||.|++......
T Consensus 85 n---vd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~e 138 (185)
T KOG0074|consen 85 N---VDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVE 138 (185)
T ss_pred c---cceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchH
Confidence 4 8999999997653 2222234444443 3468999999999998654433
No 282
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.25 E-value=1.4e-11 Score=104.84 Aligned_cols=60 Identities=32% Similarity=0.536 Sum_probs=53.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~ 151 (243)
...+++++|.||+|||||+|+|++. ....+++.+|+|+..+....+..+.++||||+..+
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGK-KVAKVGNRPGVTKGQQWIKLSDGLELLDTPGILWP 176 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeecceEEEEeCCCEEEEECCCcccC
Confidence 4578999999999999999999998 55788999999999998888888999999998654
No 283
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1.6e-10 Score=101.31 Aligned_cols=136 Identities=22% Similarity=0.318 Sum_probs=107.7
Q ss_pred EEEEecCCCCchhHHHHHHhccc-ccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~-~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.|+..|.--.|||||+.++++.. +...-....|+|.|..+++. +..+.++|.||+. .++...+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~-------------~~i~~mi 68 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHP-------------DFISNLL 68 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcH-------------HHHHHHH
Confidence 46788999999999999999863 22334557899999988874 5679999999983 3555555
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
.....+|..++|||+.+++..+..+.+-.+..++++ .++|+||+|..++..+......+...+.....+++|+
T Consensus 69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~ 142 (447)
T COG3276 69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKT 142 (447)
T ss_pred hhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhccccccccccc
Confidence 666668999999999999999999999999999877 4999999999998877777777776666444444443
No 284
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.25 E-value=3.3e-11 Score=91.76 Aligned_cols=109 Identities=21% Similarity=0.163 Sum_probs=74.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE-------EEeCCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF-------FKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~-------~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
.++|+++|.+|+|||||+-.++... ..+...+|.-+.+ .....++.||||+|.. .+..+
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~----fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqE----------rFRtL 76 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNT----FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQE----------RFRTL 76 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcc----cCccCCceeeeeEEEEEEEEcCceEEEEEEeccchH----------hhhcc
Confidence 4799999999999999999998873 2333344443322 2224578899999952 35566
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc----CCcEEEEeecCCCCC
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS----QTKYQVVLTKTDTVF 217 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~----~~p~i~v~nK~D~~~ 217 (243)
...|++. +.++++|.|.+...+... ..|++.+... ++-.++|.||+|.-.
T Consensus 77 TpSyyRg---aqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 77 TPSYYRG---AQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred CHhHhcc---CceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh
Confidence 7778777 899999999876432222 2345555432 344679999999753
No 285
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1.2e-10 Score=97.04 Aligned_cols=136 Identities=20% Similarity=0.257 Sum_probs=100.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccc--------------ccccccCCCCceEEEE---EEEeCCcEEEEeCCCCCCCc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQW--------------GVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~--------------~~~~vs~~~gtT~~~~---~~~~~~~~~liDTpG~~~~~ 152 (243)
.+..+|+.+|.-+.|||||.-+|+... +.+.-....|.|.... +...+..+-.+|+||+.
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa--- 86 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA--- 86 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH---
Confidence 356799999999999999999988631 0011122345665543 22236789999999974
Q ss_pred cchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHHHHH-HHHHHHH
Q 026112 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVAR-RAMQIEE 230 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~~~~-~~~~l~~ 230 (243)
.+++..+....+.|..|+|+.+.++..++..+.+=+.++.++| +++++||+|+++..++.+ .-+.+++
T Consensus 87 ----------DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvre 156 (394)
T COG0050 87 ----------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRE 156 (394)
T ss_pred ----------HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHH
Confidence 3566666666668999999999998888888877677788886 678899999998666544 4467888
Q ss_pred HHhhCCCc
Q 026112 231 SLKANNSL 238 (243)
Q Consensus 231 ~l~~~~~~ 238 (243)
.|..++.+
T Consensus 157 LLs~y~f~ 164 (394)
T COG0050 157 LLSEYGFP 164 (394)
T ss_pred HHHHcCCC
Confidence 88887765
No 286
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.8e-10 Score=86.54 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=73.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccc-cccCCCCceEEE-EEEE--eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV-RTSDKPGLTQTI-NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~-~vs~~~gtT~~~-~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+++.++|.+.+|||||+-+.++..... .++ .-|..-.+ ..+. ...++.+|||+|.. .+..+...
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvs-TvGidFKvKTvyr~~kRiklQiwDTagqE----------ryrtiTTa 89 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVS-TVGIDFKVKTVYRSDKRIKLQIWDTAGQE----------RYRTITTA 89 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceee-eeeeeEEEeEeeecccEEEEEEEecccch----------hhhHHHHH
Confidence 4699999999999999999999873111 111 11111111 1111 14679999999953 24556666
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
|++. ++++++++|.++..+... ..+...+.. .+.|+++|.||||+.++.
T Consensus 90 yyRg---amgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eR 142 (193)
T KOG0093|consen 90 YYRG---AMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSER 142 (193)
T ss_pred Hhhc---cceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccce
Confidence 7766 899999999875421111 223333332 268999999999997654
No 287
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.5e-11 Score=95.89 Aligned_cols=119 Identities=18% Similarity=0.280 Sum_probs=81.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
....+|+++|-.||||||++..|-.. ....+.+.-|.......+. +..+.+||.-|... ++..|. .|+
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~-E~vttvPTiGfnVE~v~yk-n~~f~vWDvGGq~k------~R~lW~----~Y~ 82 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLG-EIVTTVPTIGFNVETVEYK-NISFTVWDVGGQEK------LRPLWK----HYF 82 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccC-CcccCCCccccceeEEEEc-ceEEEEEecCCCcc------cccchh----hhc
Confidence 34569999999999999999998777 3344455555544443333 88999999999632 233343 444
Q ss_pred hcccCccEEEEEEeCCCC--CChhhHHHHHHHHhc---CCcEEEEeecCCCCChHHHHH
Q 026112 170 STRVSLKRVCLLIDTKWG--VKPRDHELISLMERS---QTKYQVVLTKTDTVFPIDVAR 223 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~~---~~p~i~v~nK~D~~~~~~~~~ 223 (243)
.. .++++||+|+++. +.+...++...+... +.|+++..||.|+...-...+
T Consensus 83 ~~---t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~e 138 (181)
T KOG0070|consen 83 QN---TQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAE 138 (181)
T ss_pred cC---CcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHH
Confidence 33 8999999999864 333334555555433 689999999999986544433
No 288
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.23 E-value=1.7e-10 Score=98.40 Aligned_cols=140 Identities=19% Similarity=0.206 Sum_probs=98.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc---------cccc----------------------CCCCceEEEEEEE---e
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV---------VRTS----------------------DKPGLTQTINFFK---L 136 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~---------~~vs----------------------~~~gtT~~~~~~~---~ 136 (243)
+..+++.+|.-.-||||||-+|+-..+. ...| ...|.|.|+.+.+ .
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 4568999999999999999999864310 0111 1234788875443 4
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT 215 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~ 215 (243)
..+|.+.||||+ +++.+.+......||+.+++||+..++.++.....-...-++++ +++++||+||
T Consensus 85 KRkFIiADTPGH-------------eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDL 151 (431)
T COG2895 85 KRKFIIADTPGH-------------EQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDL 151 (431)
T ss_pred cceEEEecCCcH-------------HHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecc
Confidence 678999999997 35677777777789999999999999888887766666667765 8899999999
Q ss_pred CChH--HHHHHHHHHHH---HHhhCCCccccCC
Q 026112 216 VFPI--DVARRAMQIEE---SLKANNSLVQPVV 243 (243)
Q Consensus 216 ~~~~--~~~~~~~~l~~---~l~~~~~~~~pi~ 243 (243)
++-. .+....+++.. .++-......|+|
T Consensus 152 vdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiS 184 (431)
T COG2895 152 VDYSEEVFEAIVADYLAFAAQLGLKDVRFIPIS 184 (431)
T ss_pred cccCHHHHHHHHHHHHHHHHHcCCCcceEEech
Confidence 9543 34444444444 4444434444553
No 289
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.23 E-value=6.6e-11 Score=97.77 Aligned_cols=84 Identities=20% Similarity=0.215 Sum_probs=53.8
Q ss_pred cEEEEeCCCCCCC---ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChh-----hHHHHHHHHhcCCcEEEEe
Q 026112 139 KLCLVDLPGYGFA---YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR-----DHELISLMERSQTKYQVVL 210 (243)
Q Consensus 139 ~~~liDTpG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~-----~~~~~~~l~~~~~p~i~v~ 210 (243)
++++|||||..+. ++...+ +.+. +.. ...-+|+||+|....-.+. -......+.+...|+++|+
T Consensus 117 ~~~liDTPGQIE~FtWSAsGsI------Ite~-las-s~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvf 188 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASGSI------ITET-LAS-SFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVF 188 (366)
T ss_pred CEEEEcCCCceEEEEecCCccc------hHhh-Hhh-cCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEE
Confidence 6999999996553 111111 1111 111 1156789999976532222 2345566677899999999
Q ss_pred ecCCCCChHHHHHHHHHHHH
Q 026112 211 TKTDTVFPIDVARRAMQIEE 230 (243)
Q Consensus 211 nK~D~~~~~~~~~~~~~l~~ 230 (243)
||+|+.+..-..+++.+++.
T Consensus 189 NK~Dv~d~~fa~eWm~DfE~ 208 (366)
T KOG1532|consen 189 NKTDVSDSEFALEWMTDFEA 208 (366)
T ss_pred ecccccccHHHHHHHHHHHH
Confidence 99999998877776655554
No 290
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.22 E-value=9.9e-12 Score=110.25 Aligned_cols=59 Identities=39% Similarity=0.620 Sum_probs=54.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~ 151 (243)
...|++||+||+||||+||+|.|. +...||..||.|++++.+.+...+++.||||+.-+
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~-KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfP 372 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGR-KKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFP 372 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcC-ceeeeecCCCCcceeEEEEcCCCceecCCCCcccc
Confidence 579999999999999999999999 66889999999999999999999999999997654
No 291
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.21 E-value=7e-11 Score=88.71 Aligned_cols=111 Identities=20% Similarity=0.269 Sum_probs=76.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
...+.++|-.|+|||||.|.++.........+ |+..+.+.. +..+.+||.||... +..+.++|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmip----tvGfnmrk~tkgnvtiklwD~gGq~r----------frsmWery 85 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIP----TVGFNMRKVTKGNVTIKLWDLGGQPR----------FRSMWERY 85 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcc----cccceeEEeccCceEEEEEecCCCcc----------HHHHHHHH
Confidence 35889999999999999999887432222333 333333322 45788999999643 34555566
Q ss_pred HhcccCccEEEEEEeCCCC--CChhhHHHHHHHHh---cCCcEEEEeecCCCCChH
Q 026112 169 VSTRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
.+. +++++|++|+.++ ++....++...+.. .++|++++.||.|+.+.-
T Consensus 86 cR~---v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL 138 (186)
T KOG0075|consen 86 CRG---VSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL 138 (186)
T ss_pred hhc---CcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc
Confidence 555 8999999998763 33334455555543 479999999999998653
No 292
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.6e-10 Score=103.38 Aligned_cols=135 Identities=21% Similarity=0.245 Sum_probs=93.2
Q ss_pred CCCCCCEEEEecCCCCchhHHHHHHhccccc-------------ccccCCCCceEEE---EEEEeC---CcEEEEeCCCC
Q 026112 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGV-------------VRTSDKPGLTQTI---NFFKLG---TKLCLVDLPGY 148 (243)
Q Consensus 88 ~~~~~~~I~ivG~~naGKSSLin~L~~~~~~-------------~~vs~~~gtT~~~---~~~~~~---~~~~liDTpG~ 148 (243)
|.++..+++||-+-..|||||..+|+..... -.+....|.|... ...+.+ +.+.+|||||+
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 4456778999999999999999999875320 1122345666553 233333 77899999998
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHH
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 228 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l 228 (243)
.+. ..++++.+ . .|+++++|+|+.+++..+....+...-..+..+|.|+||+|+... +..+....+
T Consensus 136 vDF--s~EVsRsl--------a---ac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~a-dpe~V~~q~ 201 (650)
T KOG0462|consen 136 VDF--SGEVSRSL--------A---ACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSA-DPERVENQL 201 (650)
T ss_pred ccc--cceehehh--------h---hcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCC-CHHHHHHHH
Confidence 763 22222221 1 189999999999999888877666666778999999999999854 334444555
Q ss_pred HHHHhhCC
Q 026112 229 EESLKANN 236 (243)
Q Consensus 229 ~~~l~~~~ 236 (243)
.+.++...
T Consensus 202 ~~lF~~~~ 209 (650)
T KOG0462|consen 202 FELFDIPP 209 (650)
T ss_pred HHHhcCCc
Confidence 55555443
No 293
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=2.1e-10 Score=86.70 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=77.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++++++|..|+|||.|+..+........+++.-|+.-...+..+ ..++.+|||+|. +.+....+.|
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQ----------ErFRSVtRsY 78 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQ----------ERFRSVTRSY 78 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccH----------HHHHHHHHHH
Confidence 468999999999999999999886322233433333222222233 347889999994 2456777888
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHh------cCCcEEEEeecCCCCChHHH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMER------SQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~------~~~p~i~v~nK~D~~~~~~~ 221 (243)
++. +-+.++|.|.+.. +....+-+++.. .++-++++.||.|+....++
T Consensus 79 YRG---AAGAlLVYD~Tsr--dsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~V 132 (214)
T KOG0086|consen 79 YRG---AAGALLVYDITSR--DSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREV 132 (214)
T ss_pred hcc---ccceEEEEeccch--hhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhh
Confidence 887 7788899998754 233334444432 24668899999999876543
No 294
>PRK13768 GTPase; Provisional
Probab=99.21 E-value=9.6e-11 Score=98.40 Aligned_cols=84 Identities=25% Similarity=0.269 Sum_probs=53.9
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHH-----hcCCcEEEEeec
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME-----RSQTKYQVVLTK 212 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~-----~~~~p~i~v~nK 212 (243)
..+.++||||..+.... ...+..+.+.... .. .+++++|+|+.......+.....++. ..+.|+++|+||
T Consensus 97 ~~~~~~d~~g~~~~~~~---~~~~~~~~~~l~~-~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK 171 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF---RESGRKLVERLSG-SS-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNK 171 (253)
T ss_pred CCEEEEeCCcHHHHHhh---hHHHHHHHHHHHh-cC-CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEh
Confidence 47999999996542211 1222333332222 12 78999999998766666654444332 468999999999
Q ss_pred CCCCChHHHHHHHH
Q 026112 213 TDTVFPIDVARRAM 226 (243)
Q Consensus 213 ~D~~~~~~~~~~~~ 226 (243)
+|+....+......
T Consensus 172 ~D~~~~~~~~~~~~ 185 (253)
T PRK13768 172 ADLLSEEELERILK 185 (253)
T ss_pred HhhcCchhHHHHHH
Confidence 99998766544433
No 295
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.19 E-value=3.4e-10 Score=99.57 Aligned_cols=115 Identities=26% Similarity=0.325 Sum_probs=83.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccc----c----------ccCCCCceEE---EEEEEeCCcEEEEeCCCCCCCcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV----R----------TSDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYA 153 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~----~----------vs~~~gtT~~---~~~~~~~~~~~liDTpG~~~~~~ 153 (243)
...+|+|+-.-..|||||+..|+.....- . .....|.|.- ....+.+..+.++||||+.+.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADF-- 81 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADF-- 81 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCc--
Confidence 34689999999999999999999753110 0 1113344432 233445889999999998663
Q ss_pred chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
..++++ .+.. .|.|++++|+.++..++...+++-.-..+.+-|+|+||+|....
T Consensus 82 GGEVER----vl~M-------VDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~A 135 (603)
T COG1217 82 GGEVER----VLSM-------VDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDA 135 (603)
T ss_pred cchhhh----hhhh-------cceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCC
Confidence 222322 2222 89999999999998899988888777788899999999999854
No 296
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1.1e-10 Score=86.93 Aligned_cols=136 Identities=18% Similarity=0.293 Sum_probs=85.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
..+|+.+|-+++||||++..|.-.. ...+-+..|.......+ -+..+.++|.-|. +.++..| +.|+..
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVty-kN~kfNvwdvGGq------d~iRplW----rhYy~g 84 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY-KNVKFNVWDVGGQ------DKIRPLW----RHYYTG 84 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCC-CcccccccceeEEEEEe-eeeEEeeeeccCc------hhhhHHH----HhhccC
Confidence 4689999999999999999998772 23233333333322222 3678999999994 3344444 455544
Q ss_pred ccCccEEEEEEeCCCC--CChhhHHHHHHHHh---cCCcEEEEeecCCCCChHHHHHHHHHHH-HHHhhCCCccccC
Q 026112 172 RVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIE-ESLKANNSLVQPV 242 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~p~i~v~nK~D~~~~~~~~~~~~~l~-~~l~~~~~~~~pi 242 (243)
..++++|+|+... +.+...++...+.. ...++++..||.|+.+....++..+.++ +.+......++|-
T Consensus 85 ---tqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~ 158 (180)
T KOG0071|consen 85 ---TQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPS 158 (180)
T ss_pred ---CceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecc
Confidence 7899999997654 22223445555432 2578999999999987655444444333 2245555566663
No 297
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=2.6e-10 Score=104.86 Aligned_cols=112 Identities=24% Similarity=0.379 Sum_probs=88.7
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe-------------------CCcEEEEeCCCC
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-------------------GTKLCLVDLPGY 148 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~-------------------~~~~~liDTpG~ 148 (243)
-+.|.|+|+|+..+|||-|+..|.+.+ ..-+...|.|+.+ .+++. -+.+.+|||||+
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tN--VqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh 550 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTN--VQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH 550 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccc--cccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence 357899999999999999999999974 5566777777765 22221 146899999996
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
.. |..-..+...-||+.|+|+|..+++.++..+-+++|+..+.|||+++||+|.+
T Consensus 551 Es-------------FtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 551 ES-------------FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRL 605 (1064)
T ss_pred hh-------------hhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhh
Confidence 32 22222233344999999999999999999999999999999999999999975
No 298
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.18 E-value=4.7e-11 Score=97.49 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=68.5
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE---EEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.+..+|+++|.|++|||||+..++... +....+.+||-.+. ..+.|..++++|.||+.+..++.. .-.+
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~--SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgk------GRGR 131 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTH--SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGK------GRGR 131 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcch--hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCC------CCCc
Confidence 356799999999999999999999984 67788899988874 334588899999999877543221 1123
Q ss_pred HHHhcccCccEEEEEEeCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWG 187 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~ 187 (243)
+..+..+.+|+|++|+|++.+
T Consensus 132 QviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 132 QVIAVARTADLILMVLDATKS 152 (364)
T ss_pred eEEEEeecccEEEEEecCCcc
Confidence 334445569999999999864
No 299
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.17 E-value=8.3e-11 Score=92.99 Aligned_cols=58 Identities=34% Similarity=0.617 Sum_probs=50.8
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCC
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~ 148 (243)
+..++++++|.+|+|||||+|+|++. ....++..+++|++...+..+..+.++||||+
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGK-KVAKVGNKPGVTKGIQWIKISPGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCEEeeeEEEEecCCEEEEECCCC
Confidence 34578999999999999999999998 44578889999999988777778999999997
No 300
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=6.4e-10 Score=94.67 Aligned_cols=129 Identities=21% Similarity=0.292 Sum_probs=92.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-----ccccccCCCCceEEEEEEEe------------CCcEEEEeCCCCCCCcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFFKL------------GTKLCLVDLPGYGFAYA 153 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs~~~gtT~~~~~~~~------------~~~~~liDTpG~~~~~~ 153 (243)
...+++++|.-.+|||||-.+|.... +....|...|.|-|.-+... .-.+.++|+||+.
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa---- 81 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA---- 81 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH----
Confidence 45799999999999999999998642 11234555677777654331 2356999999973
Q ss_pred chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHH
Q 026112 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (243)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l 232 (243)
.+++..+....-.|+.++|+|+..+.+.+..+.+-.-+......++|+||.|...+......++...+.+
T Consensus 82 ---------sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~ 151 (522)
T KOG0461|consen 82 ---------SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKV 151 (522)
T ss_pred ---------HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHH
Confidence 3556666666668999999999988877776655444455678899999999998765554444444433
No 301
>PRK12289 GTPase RsgA; Reviewed
Probab=99.15 E-value=1.1e-10 Score=102.12 Aligned_cols=57 Identities=33% Similarity=0.482 Sum_probs=47.7
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCC-------ceEEEEEEEeCCcEEEEeCCCCCCC
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~g-------tT~~~~~~~~~~~~~liDTpG~~~~ 151 (243)
.++|+|.||+|||||||+|++. ....++.+++ ||++...+.......++||||+...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~-~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD-VELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc-cccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCcccc
Confidence 5899999999999999999987 4466777777 8999988877545589999999765
No 302
>PRK13796 GTPase YqeH; Provisional
Probab=99.14 E-value=6.8e-11 Score=104.30 Aligned_cols=59 Identities=31% Similarity=0.380 Sum_probs=49.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc----ccccccCCCCceEEEEEEEeCCcEEEEeCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~----~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~ 150 (243)
...++++|.||+|||||||+|++.. +...++..||||++...+..+....++||||+..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCccc
Confidence 3589999999999999999998642 2345899999999998888777789999999854
No 303
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=99.14 E-value=2.7e-10 Score=95.77 Aligned_cols=131 Identities=24% Similarity=0.286 Sum_probs=83.4
Q ss_pred CCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhh-----------hh---hhhhHHHhhc
Q 026112 17 QPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENI-----------FR---NKLEFFAAAK 82 (243)
Q Consensus 17 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~-----------~~---~~~~~~~~~~ 82 (243)
=|+.+.++.|++-+.-+.+++.++++.+ ..+.+.-.....-+......-+ .+ +.+.......
T Consensus 58 iPLssrn~~~~~~~~~k~riiVlNK~DL----ad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l 133 (335)
T KOG2485|consen 58 IPLSSRNELFQDFLPPKPRIIVLNKMDL----ADPKEQKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLLKILTILSEEL 133 (335)
T ss_pred cCCccccHHHHHhcCCCceEEEEecccc----cCchhhhHHHHHHHhhcccchhhhhhhhhhhhccccHHHHHHHHHHHH
Confidence 4889999999999999999999998632 2211110000000000000000 00 1111222222
Q ss_pred ccCCCCCCCCCEEEEecCCCCchhHHHHHHhcc----cccccccCCCCceEEEEE---EEeCCcEEEEeCCCCCCC
Q 026112 83 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 83 ~~~~~~~~~~~~I~ivG~~naGKSSLin~L~~~----~~~~~vs~~~gtT~~~~~---~~~~~~~~liDTpG~~~~ 151 (243)
.+.....+..+.|.++|-||+|||||+|++... .+.+.+++.||.|+.+.. +.....+.++||||+.-+
T Consensus 134 ~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P 209 (335)
T KOG2485|consen 134 VRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVP 209 (335)
T ss_pred HHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCC
Confidence 333344567899999999999999999998753 256789999999999854 234778999999998765
No 304
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.14 E-value=2.1e-10 Score=84.00 Aligned_cols=115 Identities=18% Similarity=0.163 Sum_probs=71.8
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (243)
.+++++|..|+|||||+++|-|.+ .. .-.|+.+.+.. =..+||||--- . - ..+....+...
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~--~l----ykKTQAve~~d----~~~IDTPGEy~---~--~----~~~Y~aL~tt~ 62 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGND--TL----YKKTQAVEFND----KGDIDTPGEYF---E--H----PRWYHALITTL 62 (148)
T ss_pred ceeEEecccccCchhHHHHhhcch--hh----hcccceeeccC----ccccCCchhhh---h--h----hHHHHHHHHHh
Confidence 479999999999999999999984 11 11244444322 23599999321 0 0 12233333445
Q ss_pred cCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
.++|++++|..+.++.+....-+ +.-...|+|-|++|+|+.++.++......+.
T Consensus 63 ~dadvi~~v~~and~~s~f~p~f---~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~ 116 (148)
T COG4917 63 QDADVIIYVHAANDPESRFPPGF---LDIGVKKVIGVVTKADLAEDADISLVKRWLR 116 (148)
T ss_pred hccceeeeeecccCccccCCccc---ccccccceEEEEecccccchHhHHHHHHHHH
Confidence 56999999988776533222211 2223567999999999998766655544433
No 305
>PRK12288 GTPase RsgA; Reviewed
Probab=99.13 E-value=1.4e-10 Score=101.35 Aligned_cols=70 Identities=29% Similarity=0.371 Sum_probs=51.5
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCC-------ceEEEEEEEeCCcEEEEeCCCCCCCc----cchHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGFAY----AKEEVKDAWE 162 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~g-------tT~~~~~~~~~~~~~liDTpG~~~~~----~~~~~~~~~~ 162 (243)
.++|+|.||+|||||||+|++. ....++.+++ ||+....+..+....++||||+.+-. ..+++...|.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~-~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~~l~~~~~~~l~~~F~ 285 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPE-AEILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFGLWHLEPEQVTQGFV 285 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccc-cceeeccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCcccCCCCCHHHHHHhhH
Confidence 5799999999999999999987 3355555543 78888888776556799999987642 2344555554
Q ss_pred HH
Q 026112 163 EL 164 (243)
Q Consensus 163 ~~ 164 (243)
.+
T Consensus 286 ei 287 (347)
T PRK12288 286 EF 287 (347)
T ss_pred HH
Confidence 43
No 306
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.12 E-value=8.6e-10 Score=107.51 Aligned_cols=99 Identities=23% Similarity=0.376 Sum_probs=73.2
Q ss_pred chhHHHHHHhcccccccccCCCCceEEEEEEEe--C-------------------CcEEEEeCCCCCCCccchHHHHHHH
Q 026112 104 GKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--G-------------------TKLCLVDLPGYGFAYAKEEVKDAWE 162 (243)
Q Consensus 104 GKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--~-------------------~~~~liDTpG~~~~~~~~~~~~~~~ 162 (243)
+||||+.+|.+.. .......|.|+++-.+.. + +.+.+|||||+.. +.
T Consensus 473 ~KTtLLD~iR~t~--v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~----------F~ 540 (1049)
T PRK14845 473 HNTTLLDKIRKTR--VAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA----------FT 540 (1049)
T ss_pred ccccHHHHHhCCC--cccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH----------HH
Confidence 5999999999983 344556678887643321 1 2389999999632 12
Q ss_pred HHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 163 ~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.+... ....+|++++|+|++.++..+..+.+..+...++|+++|+||+|+..
T Consensus 541 ~lr~~---g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 541 SLRKR---GGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIP 592 (1049)
T ss_pred HHHHh---hcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCcc
Confidence 22212 23448999999999988888888888888888999999999999964
No 307
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.11 E-value=1.8e-10 Score=96.27 Aligned_cols=69 Identities=29% Similarity=0.397 Sum_probs=49.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCC-------CCceEEEEEEEeCCcEEEEeCCCCCCCc----cchHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-------PGLTQTINFFKLGTKLCLVDLPGYGFAY----AKEEVKDAW 161 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~-------~gtT~~~~~~~~~~~~~liDTpG~~~~~----~~~~~~~~~ 161 (243)
..++++|.+|+|||||+|+|++.. ...++.. ..||++...+..+ ...++||||+.... ..+++...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~-~~~t~~i~~~~~~G~hTT~~~~l~~l~-~~~liDtPG~~~~~l~~~~~~~~~~~f 198 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV-KQQVNDISSKLGLGKHTTTHVELFHFH-GGLIADTPGFNEFGLWHLEPEQLTQGF 198 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh-hccccceeccCCCCCCcCCceEEEEcC-CcEEEeCCCccccCCCCCCHHHHHHhC
Confidence 478999999999999999999873 2333332 3388888877763 45899999997632 234455555
Q ss_pred HH
Q 026112 162 EE 163 (243)
Q Consensus 162 ~~ 163 (243)
.+
T Consensus 199 ~e 200 (245)
T TIGR00157 199 VE 200 (245)
T ss_pred HH
Confidence 44
No 308
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.10 E-value=4.3e-10 Score=90.79 Aligned_cols=111 Identities=14% Similarity=0.058 Sum_probs=73.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE-----EEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~-----~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
..+|+++|.+|+|||+|...+.+.. .+..+.+|..+.. .......+.++||+|..+ +..+..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~---f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~----------~~~~~~ 69 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGR---FVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEE----------FSAMRD 69 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccc---cccccCCCccccceEEEEECCEEEEEEEEcCCCccc----------ChHHHH
Confidence 3689999999999999999988873 3444555544421 111234677999999433 233444
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~ 218 (243)
.|+.. .|+.++|++.++..+.+. ..+.+.+. ...+|+++|.||+|+...
T Consensus 70 ~~~~~---~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~ 123 (196)
T KOG0395|consen 70 LYIRN---GDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE 123 (196)
T ss_pred Hhhcc---CcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc
Confidence 55554 788899998776533333 23333332 235799999999999764
No 309
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.09 E-value=8.3e-11 Score=91.39 Aligned_cols=59 Identities=29% Similarity=0.328 Sum_probs=40.7
Q ss_pred CEEEEecCCCCchhHHHHHHhccccc--cccc----CCCCceEEEEEEEeCCcEEEEeCCCCCCC
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGV--VRTS----DKPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~--~~vs----~~~gtT~~~~~~~~~~~~~liDTpG~~~~ 151 (243)
..++|+|.+|||||||+|+|++.... ..++ ....||+....+..+....++||||+.+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCcc
Confidence 58999999999999999999997321 1122 23347788888888778999999998764
No 310
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.09 E-value=3.4e-10 Score=87.96 Aligned_cols=57 Identities=37% Similarity=0.567 Sum_probs=49.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~ 148 (243)
...+++++|.+|+|||||+|+|.+. ....+++.+|+|++......+..+.++||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGR-HSASTSPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 3468899999999999999999987 44667889999998887767778999999995
No 311
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=2.1e-09 Score=96.92 Aligned_cols=130 Identities=18% Similarity=0.240 Sum_probs=89.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccc-----------------------------cccccCCCCceEEEEEE---EeC
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-----------------------------VVRTSDKPGLTQTINFF---KLG 137 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~-----------------------------~~~vs~~~gtT~~~~~~---~~~ 137 (243)
......+++|..++|||||+..|+-.-. ....-...|+|.++... ...
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 3566889999999999999998873210 01111234567766332 235
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCC-------hhhHHHHHHHHhcCC-cEEEE
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-------PRDHELISLMERSQT-KYQVV 209 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~-------~~~~~~~~~l~~~~~-p~i~v 209 (243)
..++|+|+||+.+ ++...+.....+|+.++|+|++.+.- .+..++...++.+++ .++++
T Consensus 255 ~~~tliDaPGhkd-------------Fi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qliva 321 (603)
T KOG0458|consen 255 KIVTLIDAPGHKD-------------FIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVA 321 (603)
T ss_pred eeEEEecCCCccc-------------cchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEE
Confidence 6799999999754 45555666667999999999875422 233677788888886 48999
Q ss_pred eecCCCCC--hHHHHHHHHHHHHHH
Q 026112 210 LTKTDTVF--PIDVARRAMQIEESL 232 (243)
Q Consensus 210 ~nK~D~~~--~~~~~~~~~~l~~~l 232 (243)
+||+|+++ .+.+.+....+.-+|
T Consensus 322 iNKmD~V~Wsq~RF~eIk~~l~~fL 346 (603)
T KOG0458|consen 322 INKMDLVSWSQDRFEEIKNKLSSFL 346 (603)
T ss_pred eecccccCccHHHHHHHHHHHHHHH
Confidence 99999984 344555555555555
No 312
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.06 E-value=3.2e-10 Score=99.06 Aligned_cols=86 Identities=21% Similarity=0.142 Sum_probs=64.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--------------------CCcEEEEeCCCCCCCc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGFAY 152 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--------------------~~~~~liDTpG~~~~~ 152 (243)
.+++|+|.||+|||||+|+|++. ....++++|+||.++..... +..+.++|.||+....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~-~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNL-LGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCC-CccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 58999999999999999999998 43378999999988754321 1358999999987643
Q ss_pred cchHHHHHHHHHHHHHHhcccCccEEEEEEeCC
Q 026112 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (243)
+.. ..+...++...+.+|++++|+|+.
T Consensus 82 s~g------~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKG------EGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hcc------cCcchHHHHHHHhCCEEEEEEeCC
Confidence 221 123445555666699999999974
No 313
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.9e-09 Score=91.01 Aligned_cols=139 Identities=25% Similarity=0.352 Sum_probs=95.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccC--CCCceEE----------E---E---EEE-------------eCCc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--KPGLTQT----------I---N---FFK-------------LGTK 139 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~--~~gtT~~----------~---~---~~~-------------~~~~ 139 (243)
...+|..+|.-..|||||..+|+|-.- ...+. ..|.|.. | . .+. .-..
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT-~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWT-DRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred cceEeeeeeecccchhhheehhhceee-echhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 457999999999999999999998420 00000 0111100 0 0 000 0136
Q ss_pred EEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-CChhhHHHHHHHHhcC-CcEEEEeecCCCCC
Q 026112 140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQ-TKYQVVLTKTDTVF 217 (243)
Q Consensus 140 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-~~~~~~~~~~~l~~~~-~p~i~v~nK~D~~~ 217 (243)
+.++|.||+ +.++...++...--|..++|++++++ .+++..+.+-.+.-.+ ..+++|-||+|++.
T Consensus 88 VSfVDaPGH-------------e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~ 154 (415)
T COG5257 88 VSFVDAPGH-------------ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS 154 (415)
T ss_pred EEEeeCCch-------------HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceec
Confidence 889999997 34555666666667999999998875 5566677776666666 46999999999999
Q ss_pred hHHHHHHHHHHHHHHhh---CCCccccCC
Q 026112 218 PIDVARRAMQIEESLKA---NNSLVQPVV 243 (243)
Q Consensus 218 ~~~~~~~~~~l~~~l~~---~~~~~~pi~ 243 (243)
.+...+..+++++++.. .+.++.||+
T Consensus 155 ~E~AlE~y~qIk~FvkGt~Ae~aPIIPiS 183 (415)
T COG5257 155 RERALENYEQIKEFVKGTVAENAPIIPIS 183 (415)
T ss_pred HHHHHHHHHHHHHHhcccccCCCceeeeh
Confidence 99888888888888765 344666664
No 314
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.03 E-value=1.5e-09 Score=94.15 Aligned_cols=78 Identities=19% Similarity=0.158 Sum_probs=48.5
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
+..+.++||+|++.+.. .... .+|++++|++...+ .+....+. .......++|+||+|+.
T Consensus 148 g~d~viieT~Gv~qs~~---------~i~~-------~aD~vlvv~~p~~g---d~iq~~k~-gi~E~aDIiVVNKaDl~ 207 (332)
T PRK09435 148 GYDVILVETVGVGQSET---------AVAG-------MVDFFLLLQLPGAG---DELQGIKK-GIMELADLIVINKADGD 207 (332)
T ss_pred CCCEEEEECCCCccchh---------HHHH-------hCCEEEEEecCCch---HHHHHHHh-hhhhhhheEEeehhccc
Confidence 57899999999975211 1111 28999999763322 22211111 11223348999999999
Q ss_pred ChHHHHHHHHHHHHHHhh
Q 026112 217 FPIDVARRAMQIEESLKA 234 (243)
Q Consensus 217 ~~~~~~~~~~~l~~~l~~ 234 (243)
...........++..+..
T Consensus 208 ~~~~a~~~~~el~~~L~l 225 (332)
T PRK09435 208 NKTAARRAAAEYRSALRL 225 (332)
T ss_pred chhHHHHHHHHHHHHHhc
Confidence 776666666777777664
No 315
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=2.2e-09 Score=97.95 Aligned_cols=112 Identities=19% Similarity=0.238 Sum_probs=78.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccccccc-------C---------CCCceEEEE---EE-E----eCCcEEEEeCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------D---------KPGLTQTIN---FF-K----LGTKLCLVDLP 146 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs-------~---------~~gtT~~~~---~~-~----~~~~~~liDTp 146 (243)
...+|+++|+-++|||+|+..|....+ ...+ . ..|++.... .. . ...-+.++|||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTH-PDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceecc-ccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 456899999999999999999998642 1110 0 111221111 11 1 13468899999
Q ss_pred CCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 147 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 147 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
|+.+. .....+....+|++++|+|+.+++.-+...+++...+...|+++|+||+|.+
T Consensus 206 GHVnF-------------~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 206 GHVNF-------------SDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred Ccccc-------------hHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 98652 1222222233899999999999988888889998888899999999999975
No 316
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.99 E-value=2.2e-09 Score=82.18 Aligned_cols=111 Identities=24% Similarity=0.273 Sum_probs=73.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE------Ee--CCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF------KL--GTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~------~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
++..++|.+-+|||||+..++.. +.+..++ -|..+.++ .. ..++.+|||+|. +.+..+
T Consensus 9 frlivigdstvgkssll~~ft~g-kfaelsd---ptvgvdffarlie~~pg~riklqlwdtagq----------erfrsi 74 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEG-KFAELSD---PTVGVDFFARLIELRPGYRIKLQLWDTAGQ----------ERFRSI 74 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcC-cccccCC---CccchHHHHHHHhcCCCcEEEEEEeeccch----------HHHHHH
Confidence 57889999999999999999987 3343332 12222221 11 347889999994 245677
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-----cCCcEEEEeecCCCCChHH
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-----~~~p~i~v~nK~D~~~~~~ 220 (243)
.+.|++. +-++++|+|.++..+.+. ..+++..+. ..+-+.+|.+|+|+....+
T Consensus 75 tksyyrn---svgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq 133 (213)
T KOG0091|consen 75 TKSYYRN---SVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ 133 (213)
T ss_pred HHHHhhc---ccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcc
Confidence 8888876 889999999876533322 123332221 1233789999999986544
No 317
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=4.9e-09 Score=94.34 Aligned_cols=113 Identities=17% Similarity=0.243 Sum_probs=79.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
+.+.|+++|+||+||||||..|.........+.+.|-..-+ ......++++.||.- +..++.
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvv--sgK~RRiTflEcp~D------------l~~miD---- 129 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVV--SGKTRRITFLECPSD------------LHQMID---- 129 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEe--ecceeEEEEEeChHH------------HHHHHh----
Confidence 45677899999999999999999863212233333311111 111346888999851 122222
Q ss_pred cccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHHH
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDV 221 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~~ 221 (243)
...-+|+|+++||+..++.-...++++.+..++.| ++-|+|+.|++.....
T Consensus 130 vaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~st 181 (1077)
T COG5192 130 VAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPST 181 (1077)
T ss_pred HHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHH
Confidence 12238999999999999988899999999999987 7789999999965443
No 318
>PRK00098 GTPase RsgA; Reviewed
Probab=98.97 E-value=1.9e-09 Score=92.67 Aligned_cols=58 Identities=31% Similarity=0.465 Sum_probs=45.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCC-------CceEEEEEEEeCCcEEEEeCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYGF 150 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~-------gtT~~~~~~~~~~~~~liDTpG~~~ 150 (243)
+..++++|.+|+|||||+|+|++.. ...++..+ .||+....+..+....++||||+.+
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~-~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~ 228 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDL-ELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSS 228 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc-CCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCc
Confidence 4578999999999999999999873 23344333 3788887777665679999999974
No 319
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.96 E-value=9.2e-09 Score=84.85 Aligned_cols=89 Identities=18% Similarity=0.107 Sum_probs=59.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-ccccccCCCCceEEEEEEEe------CCcEEEEeCCCCCCCccch-HHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKE-EVKDAWE 162 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-~~~~vs~~~gtT~~~~~~~~------~~~~~liDTpG~~~~~~~~-~~~~~~~ 162 (243)
+...|+++|++++|||||+|.|++.. ..........||+.+..+.. +..+.++||||+.+....+ .....+.
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 45688999999999999999999982 22334455778888765532 3679999999998754322 1111111
Q ss_pred HHHHHHHhcccCccEEEEEEeCC
Q 026112 163 ELVKEYVSTRVSLKRVCLLIDTK 185 (243)
Q Consensus 163 ~~~~~~~~~~~~~d~v~~vvd~~ 185 (243)
.+.. + -++++++.++..
T Consensus 86 ~l~~--l----lss~~i~n~~~~ 102 (224)
T cd01851 86 ALAT--L----LSSVLIYNSWET 102 (224)
T ss_pred HHHH--H----HhCEEEEeccCc
Confidence 1111 1 178888888765
No 320
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=1.3e-08 Score=86.63 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=100.7
Q ss_pred CCCCCEEEEecCCCCchhHHHHHHhccc--------------ccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCC
Q 026112 89 APDLPEIAFAGRSNVGKSSMLNALTRQW--------------GVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 89 ~~~~~~I~ivG~~naGKSSLin~L~~~~--------------~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~ 151 (243)
.....+|+-+|.-..|||||.-+++.-. +.+.-....|.|...-.. .....+--+||||+.
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA-- 128 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA-- 128 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH--
Confidence 3456799999999999999999888521 111122244666654222 236678899999984
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHH-HHHHHHHHH
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIE 229 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~-~~~~~~~l~ 229 (243)
.+++..+.....-|+.++|+.+.++..++..+.+=+.++.+++ +++.+||.|+++..+ +.-.-.+++
T Consensus 129 -----------DYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~R 197 (449)
T KOG0460|consen 129 -----------DYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIR 197 (449)
T ss_pred -----------HHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHH
Confidence 3777788888889999999999999888888888777787875 778899999995444 444446788
Q ss_pred HHHhhCCC
Q 026112 230 ESLKANNS 237 (243)
Q Consensus 230 ~~l~~~~~ 237 (243)
+.+.+++.
T Consensus 198 ElLse~gf 205 (449)
T KOG0460|consen 198 ELLSEFGF 205 (449)
T ss_pred HHHHHcCC
Confidence 88888764
No 321
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=5.5e-09 Score=80.19 Aligned_cols=112 Identities=17% Similarity=0.312 Sum_probs=73.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCC-CCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~-~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
.-+++++|-.|||||||++.|-.+ +....-+. .+|+....+. +..++.+|.-|+.. .++.|..++..
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdD-rl~qhvPTlHPTSE~l~Ig--~m~ftt~DLGGH~q------Arr~wkdyf~~--- 87 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDD-RLGQHVPTLHPTSEELSIG--GMTFTTFDLGGHLQ------ARRVWKDYFPQ--- 87 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccc-cccccCCCcCCChHHheec--CceEEEEccccHHH------HHHHHHHHHhh---
Confidence 348999999999999999999877 43332222 2233333332 67899999999632 23445444332
Q ss_pred cccCccEEEEEEeCCCC--CChhhHHHHHHH---HhcCCcEEEEeecCCCCChH
Q 026112 171 TRVSLKRVCLLIDTKWG--VKPRDHELISLM---ERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l---~~~~~p~i~v~nK~D~~~~~ 219 (243)
+|.+++.+|+-+. +.+...++-..+ .-.+.|+++..||+|...+.
T Consensus 88 ----v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 88 ----VDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred ----hceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 8999999997653 222222222222 22479999999999998654
No 322
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=3.6e-09 Score=87.72 Aligned_cols=148 Identities=20% Similarity=0.252 Sum_probs=98.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccc--cCCCC-----ceEEEEEEEeCCcEEEEeCCCCCCCccchHH----HHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPG-----LTQTINFFKLGTKLCLVDLPGYGFAYAKEEV----KDA 160 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~v--s~~~g-----tT~~~~~~~~~~~~~liDTpG~~~~~~~~~~----~~~ 160 (243)
.++|+-+|.+|.|||||++.|++....... ...|+ .|-+.+...+..+++++||.||++....+.. -+.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 479999999999999999999986311111 12222 2333444444568999999999987544322 112
Q ss_pred HHHHHHHHHh------------cccCccEEEEEEeC-CCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHH
Q 026112 161 WEELVKEYVS------------TRVSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 227 (243)
Q Consensus 161 ~~~~~~~~~~------------~~~~~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~ 227 (243)
+.+-++.|+. .-...++++|.|.. .+++...+.-.++.+.. .+.+|-|+-|+|.....++.+....
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds-kVNIIPvIAKaDtisK~eL~~FK~k 200 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS-KVNIIPVIAKADTISKEELKRFKIK 200 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh-hhhhHHHHHHhhhhhHHHHHHHHHH
Confidence 2222222221 11236777777764 44566666655555544 5788999999999999999999999
Q ss_pred HHHHHhhCCCccc
Q 026112 228 IEESLKANNSLVQ 240 (243)
Q Consensus 228 l~~~l~~~~~~~~ 240 (243)
+...+..++..++
T Consensus 201 imsEL~sngv~IY 213 (406)
T KOG3859|consen 201 IMSELVSNGVQIY 213 (406)
T ss_pred HHHHHHhcCceee
Confidence 9999998887665
No 323
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.94 E-value=2.3e-09 Score=90.63 Aligned_cols=72 Identities=26% Similarity=0.404 Sum_probs=51.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcccc--cccccC----CCCceEEEEEEEeCCcEEEEeCCCCCCC----ccchHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWG--VVRTSD----KPGLTQTINFFKLGTKLCLVDLPGYGFA----YAKEEVKDAWE 162 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~--~~~vs~----~~gtT~~~~~~~~~~~~~liDTpG~~~~----~~~~~~~~~~~ 162 (243)
...+++|.+|+|||||+|+|..... ...+|. ...||+....+..+..-.++|||||.+- ...+++...+.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l~~~F~ 244 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQAFP 244 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHHHHHhH
Confidence 4778999999999999999998521 112222 3348888888888777899999998763 23445555554
Q ss_pred HH
Q 026112 163 EL 164 (243)
Q Consensus 163 ~~ 164 (243)
++
T Consensus 245 ef 246 (301)
T COG1162 245 EF 246 (301)
T ss_pred HH
Confidence 44
No 324
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.94 E-value=7.9e-10 Score=85.77 Aligned_cols=115 Identities=19% Similarity=0.179 Sum_probs=74.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc---ccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~---~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++++++|.-++||||+|.+.+..- +....-...++-++......+....+|||+|..+ +..+...|
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeE----------fDaItkAy 89 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEE----------FDAITKAY 89 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchh----------HHHHHHHH
Confidence 4789999999999999999999531 1111112222333333333355678999999643 45677788
Q ss_pred HhcccCccEEEEEEeCCCCCChh-hHHHHHHHHh--cCCcEEEEeecCCCCChH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER--SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~--~~~p~i~v~nK~D~~~~~ 219 (243)
++. +...++|+..++..+.+ ..+|.+.+.. ..+|.++|-||+|+++..
T Consensus 90 yrg---aqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds 140 (246)
T KOG4252|consen 90 YRG---AQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDS 140 (246)
T ss_pred hcc---ccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhh
Confidence 877 66777787766542222 2344444433 369999999999998654
No 325
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.3e-08 Score=76.12 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=74.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCC------ceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG------LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~g------tT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
.++..++|.-|+|||.|+..++... ...+.|. -|+-+....-..++.+|||+|. +.+....
T Consensus 11 ifkyiiigdmgvgkscllhqftekk---fmadcphtigvefgtriievsgqkiklqiwdtagq----------erfravt 77 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKK---FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ----------ERFRAVT 77 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHH---HhhcCCcccceecceeEEEecCcEEEEEEeecccH----------HHHHHHH
Confidence 5688999999999999999999873 2333332 2333333323467899999994 2356677
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhcC---CcEEEEeecCCCCChHH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQ---TKYQVVLTKTDTVFPID 220 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~---~p~i~v~nK~D~~~~~~ 220 (243)
+.|++. +-..++|.|.....+-.. ..|+...+.+. .-++++.||+|+-...+
T Consensus 78 rsyyrg---aagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrd 133 (215)
T KOG0097|consen 78 RSYYRG---AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRD 133 (215)
T ss_pred HHHhcc---ccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhccc
Confidence 778777 677888999876533222 13333333333 34788999999975443
No 326
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.92 E-value=7.6e-09 Score=86.06 Aligned_cols=73 Identities=22% Similarity=0.205 Sum_probs=34.5
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc--cCccEEEEEEeCCCCCChhhH--H---HHHHHHhcCCcEEEEee
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDH--E---LISLMERSQTKYQVVLT 211 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~v~~vvd~~~~~~~~~~--~---~~~~l~~~~~p~i~v~n 211 (243)
.+.++||||..+- - .+........... ...-++++++|+.....+... . .+....+.+.|.+.|+|
T Consensus 92 ~y~l~DtPGQiEl------f-~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvls 164 (238)
T PF03029_consen 92 DYLLFDTPGQIEL------F-THSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLS 164 (238)
T ss_dssp SEEEEE--SSHHH------H-HHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE-
T ss_pred cEEEEeCCCCEEE------E-EechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeee
Confidence 7999999996431 1 1111222222222 224568899998753332221 1 11222346899999999
Q ss_pred cCCCCCh
Q 026112 212 KTDTVFP 218 (243)
Q Consensus 212 K~D~~~~ 218 (243)
|+|+..+
T Consensus 165 K~Dl~~~ 171 (238)
T PF03029_consen 165 KIDLLSK 171 (238)
T ss_dssp -GGGS-H
T ss_pred ccCcccc
Confidence 9999983
No 327
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.92 E-value=6.9e-10 Score=96.00 Aligned_cols=60 Identities=33% Similarity=0.513 Sum_probs=55.7
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCC
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~ 150 (243)
....+|+|+|.||+||||+||+|... +...+++.||.|+.++..+.+..+.|+|.||+.-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~-k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~ 309 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRR-KACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVP 309 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHh-ccccCCCCccchhhhhheeccCCceeccCCceee
Confidence 45779999999999999999999999 7799999999999999999999999999999754
No 328
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.91 E-value=1.5e-08 Score=76.76 Aligned_cols=120 Identities=19% Similarity=0.225 Sum_probs=78.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe------CCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~------~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
...+|+++|.-++|||+++..|+-.++ ....+...|..|+..... ...+.+.||+|+.+. +. ++
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~-~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~--~~-------eL 77 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNH-VPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG--QQ-------EL 77 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccC-CCCCccccchhhheeEeeecCCChhheEEEeecccccCc--hh-------hh
Confidence 356899999999999999988765422 444555556555543332 246889999998752 22 23
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhhHHHH-HHHHhc----CCcEEEEeecCCCCChHHHHH
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI-SLMERS----QTKYQVVLTKTDTVFPIDVAR 223 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~-~~l~~~----~~p~i~v~nK~D~~~~~~~~~ 223 (243)
-+.|... +|..++|.+..+.-+.+..+++ +++... .+|++++.||+|+.++.+...
T Consensus 78 prhy~q~---aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~ 138 (198)
T KOG3883|consen 78 PRHYFQF---ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDM 138 (198)
T ss_pred hHhHhcc---CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCH
Confidence 3334333 8999999987654333333333 222222 479999999999987766543
No 329
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.89 E-value=1.7e-08 Score=101.10 Aligned_cols=126 Identities=20% Similarity=0.194 Sum_probs=78.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccc-ccc-----ccCCCCceEEEEEEEeCCcEEEEeCCCCCCC-c-cchHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVR-----TSDKPGLTQTINFFKLGTKLCLVDLPGYGFA-Y-AKEEVKDAW 161 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~-~~~-----vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~-~-~~~~~~~~~ 161 (243)
...|..+++|++|+||||+|+.- |... ... .....+-|++|..+. .....++||+|-.-+ . ..+.....|
T Consensus 109 Y~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf-~~~avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 109 YDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWF-TDEAVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred hcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEe-cCCEEEEcCCCccccCCCcccccHHHH
Confidence 46789999999999999999766 3211 010 011234466676654 456779999994322 1 122335567
Q ss_pred HHHHHHH--HhcccCccEEEEEEeCCCCCChhhH---HH-------HHHH-Hh--cCCcEEEEeecCCCCC
Q 026112 162 EELVKEY--VSTRVSLKRVCLLIDTKWGVKPRDH---EL-------ISLM-ER--SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 162 ~~~~~~~--~~~~~~~d~v~~vvd~~~~~~~~~~---~~-------~~~l-~~--~~~p~i~v~nK~D~~~ 217 (243)
..++... .+..+..++||+++|..+-+..... .. ++.+ .. ...||++|+||||++.
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 7776633 3345679999999997653322111 11 1212 12 2589999999999874
No 330
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.87 E-value=3.6e-09 Score=80.56 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=74.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccccc---ccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~---vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.-=+|||||+=+.+....... +-...+.++.++...-...+.||||+|.. .++.+..-|
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQE----------rfHALGPIY 82 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQE----------RFHALGPIY 82 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchH----------hhhccCceE
Confidence 47999999999999999877776521111 11122344444444334578899999952 344555555
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCChHH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~~~ 220 (243)
++. ++++++|+|.++.-+.+. ..|...++.. .+.+++|.||+|+-+...
T Consensus 83 YRg---SnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~ 135 (218)
T KOG0088|consen 83 YRG---SNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQ 135 (218)
T ss_pred EeC---CCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhh
Confidence 555 899999999886532222 3444444433 367899999999965443
No 331
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.85 E-value=1.1e-08 Score=87.40 Aligned_cols=57 Identities=30% Similarity=0.402 Sum_probs=43.5
Q ss_pred CEEEEecCCCCchhHHHHHHhccccccccc-------CCCCceEEEEEEEeCCcEEEEeCCCCCC
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------DKPGLTQTINFFKLGTKLCLVDLPGYGF 150 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs-------~~~gtT~~~~~~~~~~~~~liDTpG~~~ 150 (243)
..++++|++|+|||||+|+|++... ..++ ...+||++...+.......++||||+.+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~-~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD-LATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh-ccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCc
Confidence 5899999999999999999998732 2222 2334788887777654568999999965
No 332
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.85 E-value=2.1e-08 Score=90.64 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=73.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCC-CCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~-~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
...+|+++|..|+||||||-+|++.+....+-+. +-++....+.+......++||..-.+ ..+ .+..-
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~--~~~--------~l~~E- 76 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSD--DRL--------CLRKE- 76 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccc--hhH--------HHHHH-
Confidence 3569999999999999999999998532222222 22333334444456689999985321 111 11111
Q ss_pred hcccCccEEEEEEeCCCC--CChhhHHHHHHHHhc-----CCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWG--VKPRDHELISLMERS-----QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~~-----~~p~i~v~nK~D~~~~ 218 (243)
.+.+|+|++|.+.+++ +......|+-.+.+. ++|+|+|.||+|+...
T Consensus 77 --irkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 77 --IRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred --HhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 1228999999976653 223334666666553 5899999999999754
No 333
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=3.4e-08 Score=90.65 Aligned_cols=117 Identities=15% Similarity=0.265 Sum_probs=76.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---------------------------------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--------------------------------------- 131 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--------------------------------------- 131 (243)
...+|+|.|.+++||||++|+++.. ++. .+....||-..
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~-klL-P~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHK-KLL-PSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHH-hhC-cccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 4569999999999999999999975 211 11111111100
Q ss_pred -------EEE-Ee------CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHH
Q 026112 132 -------NFF-KL------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 197 (243)
Q Consensus 132 -------~~~-~~------~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~ 197 (243)
.++ +. ..++.++|.||+.-+...+ ..+..+ ..++|++++|+.+...++.....++.
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~t-------swid~~---cldaDVfVlV~NaEntlt~sek~Ff~ 255 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELT-------SWIDSF---CLDADVFVLVVNAENTLTLSEKQFFH 255 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhh-------HHHHHH---hhcCCeEEEEecCccHhHHHHHHHHH
Confidence 001 00 2378999999986532222 222222 23499999999998777777777777
Q ss_pred HHHhcCCcEEEEeecCCCCChH
Q 026112 198 LMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 198 ~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
.....+..+.++-||+|.....
T Consensus 256 ~vs~~KpniFIlnnkwDasase 277 (749)
T KOG0448|consen 256 KVSEEKPNIFILNNKWDASASE 277 (749)
T ss_pred HhhccCCcEEEEechhhhhccc
Confidence 6666555577888999988653
No 334
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.83 E-value=1.8e-08 Score=89.17 Aligned_cols=130 Identities=22% Similarity=0.252 Sum_probs=85.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc-------------ccccCCCCceEEEEEEEe--------CCcEEEEeCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-------------VRTSDKPGLTQTINFFKL--------GTKLCLVDLPGYG 149 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~-------------~~vs~~~gtT~~~~~~~~--------~~~~~liDTpG~~ 149 (243)
+..+..|+-+-..|||||-.+|+..... -......|.|...+.... .+.+.+|||||+.
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 4557788888899999999999875310 012224566655432221 2568899999986
Q ss_pred CCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
+. .-++++ .++. |.+.++|+|++.++..+...-.-..-..+.-++-|+||+|+... +..+....++
T Consensus 88 DF--sYEVSR--------SLAA---CEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~A-dpervk~eIe 153 (603)
T COG0481 88 DF--SYEVSR--------SLAA---CEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAA-DPERVKQEIE 153 (603)
T ss_pred ce--EEEehh--------hHhh---CCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCC-CHHHHHHHHH
Confidence 62 112222 2222 89999999999998777654444444567899999999999864 4555566666
Q ss_pred HHHhh
Q 026112 230 ESLKA 234 (243)
Q Consensus 230 ~~l~~ 234 (243)
+.++-
T Consensus 154 ~~iGi 158 (603)
T COG0481 154 DIIGI 158 (603)
T ss_pred HHhCC
Confidence 66554
No 335
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.80 E-value=4.2e-08 Score=84.79 Aligned_cols=132 Identities=20% Similarity=0.194 Sum_probs=94.4
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccccccc-------------ccCCCCceEEEEEEEe--------------------
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVR-------------TSDKPGLTQTINFFKL-------------------- 136 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~-------------vs~~~gtT~~~~~~~~-------------------- 136 (243)
+....|+..|.-++|||||.-+|+.-. ... ..-..|-|.++.+.-.
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~-~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGR-LDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecC-CCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 466788999999999999999887531 000 0001233444433211
Q ss_pred ------CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc--cCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEE
Q 026112 137 ------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQV 208 (243)
Q Consensus 137 ------~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~ 208 (243)
+.-+.++||-|+.- +++..++.. +..|..++++.+.++++....+.+........|+++
T Consensus 194 ~vv~~aDklVsfVDtvGHEp-------------wLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviV 260 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEP-------------WLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIV 260 (527)
T ss_pred HhhhhcccEEEEEecCCccH-------------HHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEE
Confidence 13578999999731 222222221 348999999999999999999999999999999999
Q ss_pred EeecCCCCChHHHHHHHHHHHHHHhhC
Q 026112 209 VLTKTDTVFPIDVARRAMQIEESLKAN 235 (243)
Q Consensus 209 v~nK~D~~~~~~~~~~~~~l~~~l~~~ 235 (243)
|+||+|+.+.+.+....+++...+...
T Consensus 261 vvTK~D~~~ddr~~~v~~ei~~~Lk~v 287 (527)
T COG5258 261 VVTKIDMVPDDRFQGVVEEISALLKRV 287 (527)
T ss_pred EEEecccCcHHHHHHHHHHHHHHHHHh
Confidence 999999999988888888877766653
No 336
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.80 E-value=1.6e-09 Score=93.76 Aligned_cols=62 Identities=31% Similarity=0.553 Sum_probs=53.5
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~ 152 (243)
...+.|+|||+||+||||+||+|... .++.+.++||-|.--++..+-..+.+|||||+..+.
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~K-kVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKK-KVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPS 366 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhc-ccccccCCCCcchHHHHHHHHhceeEecCCCccCCC
Confidence 45679999999999999999999999 889999999998866665566789999999986543
No 337
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.80 E-value=4.7e-08 Score=79.63 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=24.7
Q ss_pred CCCCCCCEEEEecCCCCchhHHHHHHhcc
Q 026112 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 87 ~~~~~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+...+.+.|+|+|++|+|||||++.++..
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 33456789999999999999999999865
No 338
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.9e-08 Score=76.75 Aligned_cols=128 Identities=18% Similarity=0.085 Sum_probs=76.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE------EE-e---------CCcEEEEeCCCCCCCccchH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF------FK-L---------GTKLCLVDLPGYGFAYAKEE 156 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~------~~-~---------~~~~~liDTpG~~~~~~~~~ 156 (243)
++.+.+|.+|+||||++-..+....... --+|..+.+ +. . ...+.+|||+|..
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~q----FIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQE------- 78 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQ----FISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQE------- 78 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccce----eEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHH-------
Confidence 3566789999999999988776521000 001222211 11 1 1368899999942
Q ss_pred HHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhH---HHHHHHHhc----CCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 157 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH---ELISLMERS----QTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~---~~~~~l~~~----~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
.+..+...+++. +-+.++++|.+.. +... .|+..++.+ +.-++++.||+|+.+...+.+ +...
T Consensus 79 ---RFRSLTTAFfRD---AMGFlLiFDlT~e--qSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~--~qa~ 148 (219)
T KOG0081|consen 79 ---RFRSLTTAFFRD---AMGFLLIFDLTSE--QSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSE--DQAA 148 (219)
T ss_pred ---HHHHHHHHHHHh---hccceEEEeccch--HHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhH--HHHH
Confidence 344555555554 7788999997643 3333 444444432 344899999999987655433 3344
Q ss_pred HHHhhCCCcccc
Q 026112 230 ESLKANNSLVQP 241 (243)
Q Consensus 230 ~~l~~~~~~~~p 241 (243)
+....++.+.+.
T Consensus 149 ~La~kyglPYfE 160 (219)
T KOG0081|consen 149 ALADKYGLPYFE 160 (219)
T ss_pred HHHHHhCCCeee
Confidence 555556666554
No 339
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.78 E-value=1.9e-07 Score=80.40 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
....|+|+|++|+|||||++.|..
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999875
No 340
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.75 E-value=5.7e-08 Score=78.69 Aligned_cols=119 Identities=22% Similarity=0.282 Sum_probs=79.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---C-CcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.+|+++|.+|+||||+=..++.. ..+.-...+|-|.|+...+. | .-+.+||+-|.. .+++.|
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~n-y~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe-------------~fmen~ 70 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFAN-YIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE-------------EFMENY 70 (295)
T ss_pred ceEEEeccCCCCccccchhhhhh-hhhhhhhccCCcceeeehhhhhhhhheeehhccCCcH-------------HHHHHH
Confidence 58999999999999998888876 34555667788888765543 3 567799999952 244444
Q ss_pred Hhcc-----cCccEEEEEEeCCCCCChhhHHH----HHHHHhc--CCcEEEEeecCCCCChHHHHHHH
Q 026112 169 VSTR-----VSLKRVCLLIDTKWGVKPRDHEL----ISLMERS--QTKYQVVLTKTDTVFPIDVARRA 225 (243)
Q Consensus 169 ~~~~-----~~~d~v~~vvd~~~~~~~~~~~~----~~~l~~~--~~p~i~v~nK~D~~~~~~~~~~~ 225 (243)
+... ...+++++|+|++...-..|... ++.+.+. ...+.+.++|.|++..+......
T Consensus 71 ~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if 138 (295)
T KOG3886|consen 71 LSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIF 138 (295)
T ss_pred HhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHH
Confidence 4422 23788999999875433344332 2333222 34688899999999766544433
No 341
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.74 E-value=3.6e-07 Score=81.72 Aligned_cols=118 Identities=19% Similarity=0.226 Sum_probs=67.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc-----ccccccC--CC-C--------ce-EEEEEEE-------------------
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSD--KP-G--------LT-QTINFFK------------------- 135 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs~--~~-g--------tT-~~~~~~~------------------- 135 (243)
...|+++|.+|+||||++..|.... ++..++. +. + .. ..+.++.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 3478999999999999999887311 2222211 00 0 00 0111111
Q ss_pred -eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCC
Q 026112 136 -LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214 (243)
Q Consensus 136 -~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D 214 (243)
.+..+.||||||.... .+... .+ +..+. .....+.+++|+|+..+ +......+.+...-.+.-+|+||.|
T Consensus 180 ~~~~DvViIDTaGr~~~--d~~lm---~E-l~~i~-~~~~p~e~lLVlda~~G--q~a~~~a~~F~~~~~~~g~IlTKlD 250 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQ--EDSLF---EE-MLQVA-EAIQPDNIIFVMDGSIG--QAAEAQAKAFKDSVDVGSVIITKLD 250 (429)
T ss_pred hCCCCEEEEECCCCCcc--hHHHH---HH-HHHHh-hhcCCcEEEEEeccccC--hhHHHHHHHHHhccCCcEEEEECcc
Confidence 1468999999996431 11111 11 11222 12246889999998765 3344455555544456788899999
Q ss_pred CCCh
Q 026112 215 TVFP 218 (243)
Q Consensus 215 ~~~~ 218 (243)
....
T Consensus 251 ~~ar 254 (429)
T TIGR01425 251 GHAK 254 (429)
T ss_pred CCCC
Confidence 7643
No 342
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=5.1e-08 Score=84.06 Aligned_cols=137 Identities=23% Similarity=0.299 Sum_probs=96.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc-----cccccc-------CCCCceEEEEEEEe-----------------------
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTS-------DKPGLTQTINFFKL----------------------- 136 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs-------~~~gtT~~~~~~~~----------------------- 136 (243)
..+++++|.-.+|||||+-.|++.+ ..+... -..|.|..+.....
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 4589999999999999999998642 001100 01223332211110
Q ss_pred -CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc--ccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecC
Q 026112 137 -GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST--RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT 213 (243)
Q Consensus 137 -~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~ 213 (243)
..-++++|.+|... +....+.. .-..|..++|+.+..++.....+.+..+..+++|+.++++|+
T Consensus 247 SSKlvTfiDLAGh~k-------------Y~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~ 313 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAK-------------YQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKM 313 (591)
T ss_pred hcceEEEeecccchh-------------hheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEee
Confidence 23588999999643 11111100 012688999999999988888999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhhCCCcccc
Q 026112 214 DTVFPIDVARRAMQIEESLKANNSLVQP 241 (243)
Q Consensus 214 D~~~~~~~~~~~~~l~~~l~~~~~~~~p 241 (243)
|+.++..+.+...++.+.+...+....|
T Consensus 314 Dl~~~~~~~~tv~~l~nll~~~Gc~kvp 341 (591)
T KOG1143|consen 314 DLVDRQGLKKTVKDLSNLLAKAGCTKVP 341 (591)
T ss_pred ccccchhHHHHHHHHHHHHhhcCccccc
Confidence 9999999998888998888887775554
No 343
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=1.3e-07 Score=92.88 Aligned_cols=127 Identities=20% Similarity=0.224 Sum_probs=80.3
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccccc-----ccccCCCCceEEEEEEEeCCcEEEEeCCCC-CCC-ccchHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-----VRTSDKPGLTQTINFFKLGTKLCLVDLPGY-GFA-YAKEEVKDAWE 162 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~-----~~vs~~~gtT~~~~~~~~~~~~~liDTpG~-~~~-~~~~~~~~~~~ 162 (243)
.+.|..++||++|+||||++..---.-.. ...-..+| |++|.. ..+..-.+|||+|= ... ...+.....|.
T Consensus 123 yeLPWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cdw-wf~deaVlIDtaGry~~q~s~~~~~~~~W~ 200 (1188)
T COG3523 123 YELPWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCDW-WFTDEAVLIDTAGRYITQDSADEVDRAEWL 200 (1188)
T ss_pred hcCCceEEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccCc-ccccceEEEcCCcceecccCcchhhHHHHH
Confidence 57899999999999999998543221111 11222334 788873 34677899999993 222 23344567777
Q ss_pred HHHH--HHHhcccCccEEEEEEeCCCCCChhhH---HHHHHHH----------hcCCcEEEEeecCCCCCh
Q 026112 163 ELVK--EYVSTRVSLKRVCLLIDTKWGVKPRDH---ELISLME----------RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 163 ~~~~--~~~~~~~~~d~v~~vvd~~~~~~~~~~---~~~~~l~----------~~~~p~i~v~nK~D~~~~ 218 (243)
.++. +.++..+..|+|++.+|..+-.+.... .....+. +...|+++++||.|+...
T Consensus 201 ~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 201 GFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 6643 333455679999999997653333222 1122221 236899999999999863
No 344
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.68 E-value=5.3e-09 Score=86.58 Aligned_cols=118 Identities=22% Similarity=0.318 Sum_probs=62.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-----ccc-----cccCCCC------------ceEEE-EE-EE-----------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVV-----RTSDKPG------------LTQTI-NF-FK----------- 135 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-----~~~-----~vs~~~g------------tT~~~-~~-~~----------- 135 (243)
+.++|+|.|+||+|||||+++|.... +++ ..|+..| ...|. .| ..
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 35699999999999999999998632 111 1223222 01111 00 00
Q ss_pred ------------eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC--CChhhHHHHHHHHh
Q 026112 136 ------------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMER 201 (243)
Q Consensus 136 ------------~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~ 201 (243)
.|+.+.|+.|.|.+.. ++ ... .-+|.+++|+-+..+ ++-...-+++
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQs----E~-----~I~-------~~aD~~v~v~~Pg~GD~iQ~~KaGimE---- 167 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQS----EV-----DIA-------DMADTVVLVLVPGLGDEIQAIKAGIME---- 167 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTH----HH-----HHH-------TTSSEEEEEEESSTCCCCCTB-TTHHH----
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCcc----HH-----HHH-------HhcCeEEEEecCCCccHHHHHhhhhhh----
Confidence 1579999999998751 11 111 128999999875544 2222223333
Q ss_pred cCCcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 202 SQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 202 ~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
+.-++|+||+|+.... ....+++..+.
T Consensus 168 --iaDi~vVNKaD~~gA~---~~~~~l~~~l~ 194 (266)
T PF03308_consen 168 --IADIFVVNKADRPGAD---RTVRDLRSMLH 194 (266)
T ss_dssp --H-SEEEEE--SHHHHH---HHHHHHHHHHH
T ss_pred --hccEEEEeCCChHHHH---HHHHHHHHHHh
Confidence 3558999999954433 33444454443
No 345
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=4.2e-07 Score=84.42 Aligned_cols=112 Identities=19% Similarity=0.170 Sum_probs=80.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE------------------EEEEeCCcEEEEeCCCCCCC
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI------------------NFFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~------------------~~~~~~~~~~liDTpG~~~~ 151 (243)
....+|+++-.-..|||||...|.... ..+-+.-+|+-|-. .....+..+.+||+||+.+.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asn-gvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASN-GVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhc-cEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 355689999999999999999999874 23333344432221 11123678999999998662
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCC
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT 215 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~ 215 (243)
. .-+..... -+|..++++|+-+++..+...++...-..+...++|+||+|.
T Consensus 86 ~----------sevssas~---l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 86 S----------SEVSSASR---LSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred h----------hhhhhhhh---hcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhh
Confidence 1 11111111 189999999999999999988888776668899999999993
No 346
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.56 E-value=6.9e-07 Score=80.50 Aligned_cols=126 Identities=24% Similarity=0.366 Sum_probs=76.3
Q ss_pred CCCCCEEEEecCCCCchhHHHHHHhcccccccccC---------------------------------------------
Q 026112 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--------------------------------------------- 123 (243)
Q Consensus 89 ~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~--------------------------------------------- 123 (243)
....|+|+++|..++||||.+..+... ++-.-+.
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqA-RIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQA-RIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHh-ccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 367899999999999999999999864 2111100
Q ss_pred --------CCCceEEEEEEE--e-C---CcEEEEeCCCCCCCccc---hHHHHHHHHHHHHHHhcccCccEEEEEEe-CC
Q 026112 124 --------KPGLTQTINFFK--L-G---TKLCLVDLPGYGFAYAK---EEVKDAWEELVKEYVSTRVSLKRVCLLID-TK 185 (243)
Q Consensus 124 --------~~gtT~~~~~~~--~-~---~~~~liDTpG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~v~~vvd-~~ 185 (243)
..|+|....... + | ....++|.||+..+... .+..+.+..+...|+. +.+.|+++|- .+
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~---NPNAIILCIQDGS 460 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQ---NPNAIILCIQDGS 460 (980)
T ss_pred HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhc---CCCeEEEEeccCC
Confidence 011232221111 1 2 36889999998765321 1223334455555554 4888988874 32
Q ss_pred CCC-ChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 186 WGV-KPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 186 ~~~-~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
-.. ...--.+...+..++.+.|+|+||.|+.+.
T Consensus 461 VDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 461 VDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred cchhhhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence 111 111234555566778999999999998753
No 347
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.56 E-value=1.2e-07 Score=74.07 Aligned_cols=114 Identities=21% Similarity=0.238 Sum_probs=62.1
Q ss_pred CEEEEecCCCCchhHHHHHHhccccc---ccccCCCC-------------c-eEEEE---------------E-------
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGV---VRTSDKPG-------------L-TQTIN---------------F------- 133 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~---~~vs~~~g-------------t-T~~~~---------------~------- 133 (243)
|.++++|..|+|||||++.+++.... ....+..| . ..... .
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~ 80 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERL 80 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHH
Confidence 46789999999999999998865210 00000001 0 00000 0
Q ss_pred --EEeCCcEEEEeCCCCCCCccchHHHHHHHHH-HHHHHhcccCccEEEEEEeCCCCCChh--hHHHHHHHHhcCCcEEE
Q 026112 134 --FKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL-VKEYVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERSQTKYQV 208 (243)
Q Consensus 134 --~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~v~~vvd~~~~~~~~--~~~~~~~l~~~~~p~i~ 208 (243)
........++||||+.++. .+ ...+ ....+.....++.+++++|+....... ...+..++ ..--++
T Consensus 81 ~~~~~~~d~I~IEt~G~~~p~---~~---~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi---~~ad~i 151 (158)
T cd03112 81 DAGKIAFDRIVIETTGLADPG---PV---AQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQI---AFADRI 151 (158)
T ss_pred HhccCCCCEEEEECCCcCCHH---HH---HHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHH---HHCCEE
Confidence 0124578899999997632 11 1111 122233444589999999986421111 11222333 233467
Q ss_pred EeecCCC
Q 026112 209 VLTKTDT 215 (243)
Q Consensus 209 v~nK~D~ 215 (243)
|+||+|+
T Consensus 152 vlnk~dl 158 (158)
T cd03112 152 LLNKTDL 158 (158)
T ss_pred EEecccC
Confidence 8999996
No 348
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.52 E-value=2.1e-07 Score=78.36 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
+..+|+|.|.||+|||||+..|..
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHH
Confidence 446999999999999999999875
No 349
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=6.4e-07 Score=67.40 Aligned_cols=120 Identities=20% Similarity=0.193 Sum_probs=75.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
...+|.++|-.|+||+|.+-.+--- .....-+.+|....... +.+-++.+||.-|... +. .+.+.|+.
T Consensus 17 ~e~rililgldGaGkttIlyrlqvg-evvttkPtigfnve~v~-yKNLk~~vwdLggqtS------ir----PyWRcYy~ 84 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVG-EVVTTKPTIGFNVETVP-YKNLKFQVWDLGGQTS------IR----PYWRCYYA 84 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccC-cccccCCCCCcCccccc-cccccceeeEccCccc------cc----HHHHHHhc
Confidence 4568999999999999988666443 22223333333322222 2467899999999643 22 34455555
Q ss_pred cccCccEEEEEEeCCCC--CChhhHHHHHHHHh---cCCcEEEEeecCCCCChHHHHHHH
Q 026112 171 TRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRA 225 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~p~i~v~nK~D~~~~~~~~~~~ 225 (243)
. .|.++||+|+++. +.....++...++. .+..+++++||.|........+..
T Consensus 85 d---t~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~ 141 (182)
T KOG0072|consen 85 D---TDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVL 141 (182)
T ss_pred c---cceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHH
Confidence 4 8999999998763 33333455555532 246789999999987655444433
No 350
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.48 E-value=2.1e-07 Score=74.38 Aligned_cols=111 Identities=14% Similarity=0.040 Sum_probs=69.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceE-----EEEEE-EeCCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-----TINFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~-----~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++++||..++|||+|+...+... ....+.+|-- ++... .....+.+|||+|..+- .. +
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~---fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedY----------Dr-l 69 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNA---FPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDY----------DR-L 69 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCc---CcccccCeEEccceEEEEecCCCEEEEeeeecCCCccc----------cc-c
Confidence 3589999999999999998888762 2333333222 22221 12245789999996541 11 1
Q ss_pred HHHHhcccCccEEEEEEeCCCCCC--hhhHHHHHHHHhc--CCcEEEEeecCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMERS--QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~--~~~~~~~~~l~~~--~~p~i~v~nK~D~~~~ 218 (243)
+ -+ .-..+|+++++++...+.+ .....|+-.+... +.|+++|.+|.|+...
T Consensus 70 R-pl-sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 70 R-PL-SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDD 124 (198)
T ss_pred c-cc-CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhC
Confidence 1 00 1123788888777554422 2234566666655 5899999999999843
No 351
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.47 E-value=5.1e-06 Score=72.04 Aligned_cols=124 Identities=15% Similarity=0.201 Sum_probs=64.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-----cccccc-CC-C-C---------ceEEEEEE-------------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTS-DK-P-G---------LTQTINFF------------------- 134 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs-~~-~-g---------tT~~~~~~------------------- 134 (243)
.+..|+++|++|+||||++..|.+.. ++..++ +. . + ....+.+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45688999999999999998887631 111010 00 0 0 00001111
Q ss_pred -EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh-cccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeec
Q 026112 135 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS-TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK 212 (243)
Q Consensus 135 -~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK 212 (243)
..+..+.+|||||..... ....+.+..+.+-.-. .....+.+++|+|+..+ .............-.+.-+|+||
T Consensus 193 ~~~~~D~ViIDTaGr~~~~--~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a~~f~~~~~~~giIlTK 268 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNK--TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQAKAFHEAVGLTGIILTK 268 (318)
T ss_pred HhCCCCEEEEeCCCCCcCC--HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHHHHHHhhCCCCEEEEEC
Confidence 124689999999965421 1111222222211100 01236778999999855 22322222222222456788999
Q ss_pred CCCCCh
Q 026112 213 TDTVFP 218 (243)
Q Consensus 213 ~D~~~~ 218 (243)
.|....
T Consensus 269 lD~t~~ 274 (318)
T PRK10416 269 LDGTAK 274 (318)
T ss_pred CCCCCC
Confidence 997643
No 352
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.46 E-value=1.9e-06 Score=74.60 Aligned_cols=124 Identities=17% Similarity=0.183 Sum_probs=70.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccc---cc-cccCCCCceEE-----------EEE-----------------------E
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWG---VV-RTSDKPGLTQT-----------INF-----------------------F 134 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~---~~-~vs~~~gtT~~-----------~~~-----------------------~ 134 (243)
|..++.|.-|||||||+|.|+.... .+ +++...-.-.| +.. .
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 6788999999999999999997531 11 11111000000 000 0
Q ss_pred EeCCcEEEEeCCCCCCCccchHHHHHHHHHHH-HHHhcccCccEEEEEEeCCCCCChhhHHHHHHH-HhcCCcEEEEeec
Q 026112 135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK-EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM-ERSQTKYQVVLTK 212 (243)
Q Consensus 135 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l-~~~~~p~i~v~nK 212 (243)
..+....+|.|-|+.++.. + ...+.. ..+...-..|.++-|+|+.+-....+. ..+.. .+...--++|+||
T Consensus 82 ~~~~D~ivIEtTGlA~P~p---v---~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~-~~~~~~~Qia~AD~ivlNK 154 (323)
T COG0523 82 RDRPDRLVIETTGLADPAP---V---IQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDA-IAELAEDQLAFADVIVLNK 154 (323)
T ss_pred cCCCCEEEEeCCCCCCCHH---H---HHHhccccccccceeeceEEEEEeHHHhhhhHHH-HHHHHHHHHHhCcEEEEec
Confidence 1135789999999987421 1 111211 223333347889999998864332221 11222 2334456899999
Q ss_pred CCCCChHHHHH
Q 026112 213 TDTVFPIDVAR 223 (243)
Q Consensus 213 ~D~~~~~~~~~ 223 (243)
+|++++.++..
T Consensus 155 ~Dlv~~~~l~~ 165 (323)
T COG0523 155 TDLVDAEELEA 165 (323)
T ss_pred ccCCCHHHHHH
Confidence 99999876433
No 353
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.44 E-value=1.2e-07 Score=75.46 Aligned_cols=117 Identities=16% Similarity=0.173 Sum_probs=62.1
Q ss_pred CEEEEecCCCCchhHHHHHHhc-c---cccccccCCCC-c----------eEEEEEE----------------------E
Q 026112 93 PEIAFAGRSNVGKSSMLNALTR-Q---WGVVRTSDKPG-L----------TQTINFF----------------------K 135 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~-~---~~~~~vs~~~g-t----------T~~~~~~----------------------~ 135 (243)
|.+++.|..|||||||++.++. . .+.+.+-+.-| . ...+... .
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 5788999999999999999993 1 12222211111 0 0001000 0
Q ss_pred e--CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhcCCcEEEEee
Q 026112 136 L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQVVLT 211 (243)
Q Consensus 136 ~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~~~p~i~v~n 211 (243)
. +..+.++.+.|..++.. + .+. ...+...-..+.++.|+|+..-..... ..+. .+...--++|+|
T Consensus 81 ~~~~~d~IiIE~sG~a~p~~---l--~~~---~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~---~Qi~~ADvIvln 149 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPAP---L--ILQ---DPPLKEDFRLDSIITVVDATNFDELENIPELLR---EQIAFADVIVLN 149 (178)
T ss_dssp CHGC-SEEEEEEECSSGGGG---H--HHH---SHHHHHHESESEEEEEEEGTTHGGHTTHCHHHH---HHHCT-SEEEEE
T ss_pred cCCCcCEEEECCccccccch---h--hhc---cccccccccccceeEEeccccccccccchhhhh---hcchhcCEEEEe
Confidence 1 35789999999766322 2 111 122222233788999999864211111 1222 233445588899
Q ss_pred cCCCCChHH
Q 026112 212 KTDTVFPID 220 (243)
Q Consensus 212 K~D~~~~~~ 220 (243)
|+|+.+..+
T Consensus 150 K~D~~~~~~ 158 (178)
T PF02492_consen 150 KIDLVSDEQ 158 (178)
T ss_dssp -GGGHHHH-
T ss_pred ccccCChhh
Confidence 999997763
No 354
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=1.2e-07 Score=82.84 Aligned_cols=135 Identities=21% Similarity=0.270 Sum_probs=93.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccc----cccc------------CCCCceEE---EEEEEeCCcEEEEeCCCCCCCc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGV----VRTS------------DKPGLTQT---INFFKLGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~----~~vs------------~~~gtT~~---~~~~~~~~~~~liDTpG~~~~~ 152 (243)
..+|+++..-.+||||...+++--... ..+. ...|.|.. +.+...|..+.+|||||+.+..
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 347889999999999998877632110 0011 12344443 3444458999999999976521
Q ss_pred cchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHH
Q 026112 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l 232 (243)
-++ +..++ . .|+++.|+|++.++..+...+-......++|-...+||+|+... .+....+.+++.+
T Consensus 117 --lev----erclr----v---ldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~a-nfe~avdsi~ekl 182 (753)
T KOG0464|consen 117 --LEV----ERCLR----V---LDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAA-NFENAVDSIEEKL 182 (753)
T ss_pred --EEH----HHHHH----H---hcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhh-hhhhHHHHHHHHh
Confidence 111 12222 2 79999999999998888777666667778999999999999864 5677788888888
Q ss_pred hhCCCccc
Q 026112 233 KANNSLVQ 240 (243)
Q Consensus 233 ~~~~~~~~ 240 (243)
......++
T Consensus 183 ~ak~l~l~ 190 (753)
T KOG0464|consen 183 GAKALKLQ 190 (753)
T ss_pred CCceEEEE
Confidence 77665554
No 355
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.43 E-value=8.7e-06 Score=69.10 Aligned_cols=78 Identities=18% Similarity=0.216 Sum_probs=42.5
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh-cccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS-TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT 215 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~ 215 (243)
+..+.++||||.... .......+..+.+.... ....+|.+++|+|+..+ ..+........+.-...-+|+||.|.
T Consensus 154 ~~D~ViIDT~G~~~~--d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~~~g~IlTKlDe 229 (272)
T TIGR00064 154 NIDVVLIDTAGRLQN--KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVGLTGIILTKLDG 229 (272)
T ss_pred CCCEEEEeCCCCCcc--hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCCCCEEEEEccCC
Confidence 468999999997542 11111222222221110 01237889999999744 33333233322222356788999998
Q ss_pred CCh
Q 026112 216 VFP 218 (243)
Q Consensus 216 ~~~ 218 (243)
...
T Consensus 230 ~~~ 232 (272)
T TIGR00064 230 TAK 232 (272)
T ss_pred CCC
Confidence 754
No 356
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.41 E-value=2.2e-06 Score=75.47 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|+||||++..|...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999864
No 357
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.41 E-value=2.8e-06 Score=68.60 Aligned_cols=115 Identities=24% Similarity=0.348 Sum_probs=61.7
Q ss_pred EEEEecCCCCchhHHHHHHhcccc-----ccccc--CC-CCc---------eEEEEEEE--------------------e
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWG-----VVRTS--DK-PGL---------TQTINFFK--------------------L 136 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~-----~~~vs--~~-~gt---------T~~~~~~~--------------------~ 136 (243)
.|+++|++|+||||.+-.|..... +..++ .+ .|. .-.+.++. .
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 679999999999999988876421 00010 00 000 00011111 1
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhH-HHHHHHHhcCCcEEEEeecCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERSQTKYQVVLTKTDT 215 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l~~~~~p~i~v~nK~D~ 215 (243)
+..+.+|||||.... .......+..+... . ..+-+++|++++.+ ..+. .+..+....+. --+++||.|.
T Consensus 83 ~~D~vlIDT~Gr~~~--d~~~~~el~~~~~~----~-~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~~-~~lIlTKlDe 152 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPR--DEELLEELKKLLEA----L-NPDEVHLVLSATMG--QEDLEQALAFYEAFGI-DGLILTKLDE 152 (196)
T ss_dssp TSSEEEEEE-SSSST--HHHHHHHHHHHHHH----H-SSSEEEEEEEGGGG--GHHHHHHHHHHHHSST-CEEEEESTTS
T ss_pred CCCEEEEecCCcchh--hHHHHHHHHHHhhh----c-CCccceEEEecccC--hHHHHHHHHHhhcccC-ceEEEEeecC
Confidence 357999999997532 11111222222222 1 36789999998854 3333 33333333333 3566999998
Q ss_pred CCh
Q 026112 216 VFP 218 (243)
Q Consensus 216 ~~~ 218 (243)
...
T Consensus 153 t~~ 155 (196)
T PF00448_consen 153 TAR 155 (196)
T ss_dssp SST
T ss_pred CCC
Confidence 754
No 358
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.41 E-value=1.1e-06 Score=67.06 Aligned_cols=66 Identities=17% Similarity=0.128 Sum_probs=47.4
Q ss_pred cCccEEEEEEeCCCCCChhhHHHHHHHHhc--CCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 173 VSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~--~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
..+|++++|+|+..+....+..+.+++... ++|+++|+||+|+..+.... .+.+.+...+..++++
T Consensus 10 ~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~----~~~~~~~~~~~~ii~i 77 (141)
T cd01857 10 ERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRK----AWAEYFKKEGIVVVFF 77 (141)
T ss_pred hhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHH----HHHHHHHhcCCeEEEE
Confidence 349999999999887777777888888766 89999999999998655433 3334444444444443
No 359
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.40 E-value=1.8e-07 Score=69.36 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=66.8
Q ss_pred EecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE-------EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-------KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 97 ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~-------~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|.+++|||.|+-++-.. +.....--.|..+.+. ....++++|||+|.. .+......|+
T Consensus 2 llgds~~gktcllir~kdg---afl~~~fistvgid~rnkli~~~~~kvklqiwdtagqe----------rfrsvt~ayy 68 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDG---AFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQE----------RFRSVTHAYY 68 (192)
T ss_pred ccccCccCceEEEEEeccC---ceecCceeeeeeeccccceeccCCcEEEEEEeeccchH----------HHhhhhHhhh
Confidence 6899999999998655432 1111111122222221 113468899999952 3455566666
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~ 218 (243)
+. +|.++++.|.....+... ..|+..+... .+.+.++.||+|+..+
T Consensus 69 rd---a~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~e 118 (192)
T KOG0083|consen 69 RD---ADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHE 118 (192)
T ss_pred cc---cceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchh
Confidence 65 899999999776544333 4566655443 5678999999999653
No 360
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.39 E-value=3.1e-07 Score=75.70 Aligned_cols=88 Identities=23% Similarity=0.247 Sum_probs=64.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE---EEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
..+|.++|.|++|||||+..|++.. ..+..+.|||-... ..+.+.++.+.|.||+.+..... ..-.++.
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~--s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdg------kgrg~qv 130 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTF--SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDG------KGRGKQV 130 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCC--CccccccceeEEEecceEeccccceeeecCcchhcccccC------CCCccEE
Confidence 4589999999999999999999984 67888888775542 33458899999999987753211 0112233
Q ss_pred HhcccCccEEEEEEeCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWG 187 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~ 187 (243)
+...+.|+++++|+|...+
T Consensus 131 iavartcnli~~vld~~kp 149 (358)
T KOG1487|consen 131 IAVARTCNLIFIVLDVLKP 149 (358)
T ss_pred EEEeecccEEEEEeeccCc
Confidence 4445569999999997644
No 361
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.38 E-value=4.1e-07 Score=78.65 Aligned_cols=140 Identities=24% Similarity=0.246 Sum_probs=93.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc-----cccc-------ccCCCCceEEE-----------EE-------------EE
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVR-------TSDKPGLTQTI-----------NF-------------FK 135 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~-----~~~~-------vs~~~gtT~~~-----------~~-------------~~ 135 (243)
..+|+++|...+|||||+-.|+..+ ..+. ..-..|.|..+ +. ..
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 4589999999999999999888532 0000 00011112111 00 00
Q ss_pred e----CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEee
Q 026112 136 L----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 211 (243)
Q Consensus 136 ~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~n 211 (243)
. ..-+++||.+|+.. .+...+-.. ...-.|..++++-+..++--...+.+.+...+.+|+++|+|
T Consensus 213 Ice~saKviTFIDLAGHEk---------YLKTTvFGM--TGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVT 281 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEK---------YLKTTVFGM--TGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVT 281 (641)
T ss_pred eccccceeEEEEeccchhh---------hhheeeecc--ccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEE
Confidence 0 12478999999632 111111111 11236888889988887777777888888888999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 212 KTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 212 K~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
|+|..+..-+++.+..+.+.+...++...||
T Consensus 282 KIDMCPANiLqEtmKll~rllkS~gcrK~Pv 312 (641)
T KOG0463|consen 282 KIDMCPANILQETMKLLTRLLKSPGCRKLPV 312 (641)
T ss_pred eeccCcHHHHHHHHHHHHHHhcCCCcccCcE
Confidence 9999988878888888888888888777776
No 362
>PTZ00099 rab6; Provisional
Probab=98.37 E-value=8.6e-07 Score=70.39 Aligned_cols=68 Identities=18% Similarity=0.138 Sum_probs=44.2
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH-h--cCCcEEEEeec
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-R--SQTKYQVVLTK 212 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~-~--~~~p~i~v~nK 212 (243)
...+.+|||||... +..+...|+. .+|++++|+|.+...+... ..++..+. . ...|+++|+||
T Consensus 28 ~v~l~iwDt~G~e~----------~~~~~~~~~~---~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 28 PVRLQLWDTAGQER----------FRSLIPSYIR---DSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred EEEEEEEECCChHH----------hhhccHHHhC---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 35788999999632 2233444544 3999999999876422222 23444332 2 25789999999
Q ss_pred CCCCC
Q 026112 213 TDTVF 217 (243)
Q Consensus 213 ~D~~~ 217 (243)
+|+..
T Consensus 95 ~DL~~ 99 (176)
T PTZ00099 95 TDLGD 99 (176)
T ss_pred ccccc
Confidence 99964
No 363
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.34 E-value=1.1e-06 Score=74.70 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=24.1
Q ss_pred CCCCCCEEEEecCCCCchhHHHHHHhcc
Q 026112 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 88 ~~~~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...+...|.|+|.||||||||++.+++.
T Consensus 100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 100 AARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred HhcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999888864
No 364
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.34 E-value=9.3e-06 Score=71.12 Aligned_cols=135 Identities=18% Similarity=0.248 Sum_probs=74.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc---ccccccCCCC-----------c------eEEEEEE----------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPG-----------L------TQTINFF---------------- 134 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~---~~~~vs~~~g-----------t------T~~~~~~---------------- 134 (243)
..|..++.|.-|||||||+|.++... +.+.+.+.-| . ...+...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~ 82 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPT 82 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHH
Confidence 35788999999999999999998642 1111111111 0 0011110
Q ss_pred -------EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChh----------------
Q 026112 135 -------KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR---------------- 191 (243)
Q Consensus 135 -------~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~---------------- 191 (243)
.......+|.|.|+.++ ..+...+ ....+...-..|.|+.|+|+.......
T Consensus 83 l~~l~~~~~~~d~IvIEtsG~a~P---~~i~~~~---~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~ 156 (341)
T TIGR02475 83 MTKLLARRQRPDHILIETSGLALP---KPLVQAF---QWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADD 156 (341)
T ss_pred HHHHHhccCCCCEEEEeCCCCCCH---HHHHHHh---cCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccc
Confidence 01357889999998763 2222111 111112222478899999986421100
Q ss_pred ----hHHHHHH-HHhcCCcEEEEeecCCCCChHHHHHHHHHHHHH
Q 026112 192 ----DHELISL-MERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 231 (243)
Q Consensus 192 ----~~~~~~~-l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~ 231 (243)
...+... ..+....-++|+||+|+++..++....+.+++.
T Consensus 157 ~~~~~~~~~~~~~~Qi~~AD~IvlnK~Dl~~~~~l~~~~~~l~~~ 201 (341)
T TIGR02475 157 NLDHETPLEELFEDQLACADLVILNKADLLDAAGLARVRAEIAAE 201 (341)
T ss_pred cccccchHHHHHHHHHHhCCEEEEeccccCCHHHHHHHHHHHHHh
Confidence 0001111 123344568899999999988776665555543
No 365
>PRK14974 cell division protein FtsY; Provisional
Probab=98.31 E-value=5.4e-06 Score=72.22 Aligned_cols=73 Identities=21% Similarity=0.198 Sum_probs=41.3
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
+..+.+|||||.... .......+..+. . ....|.+++|+|+..+ ....+..+.....-..--+++||.|..
T Consensus 222 ~~DvVLIDTaGr~~~--~~~lm~eL~~i~----~-~~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 222 GIDVVLIDTAGRMHT--DANLMDELKKIV----R-VTKPDLVIFVGDALAG--NDAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred CCCEEEEECCCccCC--cHHHHHHHHHHH----H-hhCCceEEEeeccccc--hhHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 457999999997532 111111122221 1 1236889999998754 333333333333223467789999987
Q ss_pred Ch
Q 026112 217 FP 218 (243)
Q Consensus 217 ~~ 218 (243)
..
T Consensus 293 ~~ 294 (336)
T PRK14974 293 AK 294 (336)
T ss_pred CC
Confidence 54
No 366
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.28 E-value=4.6e-06 Score=64.59 Aligned_cols=57 Identities=23% Similarity=0.257 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH
Q 026112 161 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 161 ~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~ 220 (243)
|.++.+..... +|++++|+|++.+....+..+...+...+.|+++|+||+|+.....
T Consensus 2 ~~~~~~~i~~~---aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~ 58 (156)
T cd01859 2 WKRLVRRIIKE---SDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEV 58 (156)
T ss_pred HHHHHHHHHhh---CCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHH
Confidence 44454444443 8999999999876666666676666667899999999999976543
No 367
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=1.1e-06 Score=79.97 Aligned_cols=138 Identities=20% Similarity=0.250 Sum_probs=93.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc-ccccCCC--CceEEE----------------EEEEeCCcEEEEeCCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKP--GLTQTI----------------NFFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~-~~vs~~~--gtT~~~----------------~~~~~~~~~~liDTpG~~~~ 151 (243)
...+|.++-+--+||||+.+.++-.... ....... +++.|. .+...+..+.+|||||+.+.
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 4457888888899999999988753210 1111111 222221 11112678999999997652
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHH
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 231 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~ 231 (243)
- -++ ++.++ -.|+.++|+|+-.+...+...+-+.+...++|.+..+||+|.+... ..+.+..+...
T Consensus 118 T--~EV--------eRALr---VlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~-~~~~l~~i~~k 183 (721)
T KOG0465|consen 118 T--FEV--------ERALR---VLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGAS-PFRTLNQIRTK 183 (721)
T ss_pred E--EEe--------hhhhh---hccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCC-hHHHHHHHHhh
Confidence 1 111 12222 2799999999998998888888889999999999999999999763 55666778888
Q ss_pred HhhCCCccc-cC
Q 026112 232 LKANNSLVQ-PV 242 (243)
Q Consensus 232 l~~~~~~~~-pi 242 (243)
+......+| ||
T Consensus 184 l~~~~a~vqiPi 195 (721)
T KOG0465|consen 184 LNHKPAVVQIPI 195 (721)
T ss_pred cCCchheeEccc
Confidence 876555554 54
No 368
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.27 E-value=1.8e-06 Score=67.12 Aligned_cols=56 Identities=20% Similarity=0.155 Sum_probs=42.0
Q ss_pred cCccEEEEEEeCCCCCChhhHHHHHHHHhc--CCcEEEEeecCCCCChHHHHHHHHHH
Q 026112 173 VSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQI 228 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~--~~p~i~v~nK~D~~~~~~~~~~~~~l 228 (243)
.++|++++|+|++.+....+..+.+.+... +.|+++|+||+|+.++.+.......+
T Consensus 7 ~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~ 64 (157)
T cd01858 7 DSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKIL 64 (157)
T ss_pred hhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHH
Confidence 349999999999887666677777777653 48999999999998765544433333
No 369
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.26 E-value=1e-05 Score=71.45 Aligned_cols=117 Identities=25% Similarity=0.355 Sum_probs=63.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc-----ccccccC--CC-C------c---eEEEEEE--E---------------eC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSD--KP-G------L---TQTINFF--K---------------LG 137 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs~--~~-g------t---T~~~~~~--~---------------~~ 137 (243)
...|+|+|++|+||||++..|+... +...++. +. + + ...+.+. . .+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 3589999999999999999997531 1111110 00 0 0 0001110 0 13
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhcCCcEEEEeecCCCC
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
..+.||||||-.... .+.+ .++ ..++.. ...+.+++|+|++.. ..+ ..+++.+... ..--+++||.|..
T Consensus 321 ~DvVLIDTaGRs~kd-~~lm----~EL-~~~lk~-~~PdevlLVLsATtk--~~d~~~i~~~F~~~-~idglI~TKLDET 390 (436)
T PRK11889 321 VDYILIDTAGKNYRA-SETV----EEM-IETMGQ-VEPDYICLTLSASMK--SKDMIEIITNFKDI-HIDGIVFTKFDET 390 (436)
T ss_pred CCEEEEeCccccCcC-HHHH----HHH-HHHHhh-cCCCeEEEEECCccC--hHHHHHHHHHhcCC-CCCEEEEEcccCC
Confidence 589999999964311 1111 111 122221 225678899987643 333 4455555443 2345778999986
Q ss_pred Ch
Q 026112 217 FP 218 (243)
Q Consensus 217 ~~ 218 (243)
..
T Consensus 391 ~k 392 (436)
T PRK11889 391 AS 392 (436)
T ss_pred CC
Confidence 53
No 370
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=2.1e-06 Score=72.41 Aligned_cols=140 Identities=19% Similarity=0.288 Sum_probs=88.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc----------cc---------------ccCCCCceEEEEE------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV----------VR---------------TSDKPGLTQTINF------------ 133 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~----------~~---------------vs~~~gtT~~~~~------------ 133 (243)
...+|+-+|..-.||||+..++.|-+.+ .+ .-+.|++-+....
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 3578999999999999999999974200 00 0011111111100
Q ss_pred ----EEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-CChhhHHHHHHHHhcC-CcEE
Q 026112 134 ----FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQ-TKYQ 207 (243)
Q Consensus 134 ----~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-~~~~~~~~~~~l~~~~-~p~i 207 (243)
...-..+.++|+||+. -++...+....-.|..++++.+.++ .+++..+.+..+.-+. +.++
T Consensus 117 ~~~~~klvRHVSfVDCPGHD-------------iLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhii 183 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHD-------------ILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHII 183 (466)
T ss_pred CCCceEEEEEEEeccCCchH-------------HHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEE
Confidence 0011368899999963 2344444444446888888876654 4445555554444333 5789
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHHhh---CCCccccCC
Q 026112 208 VVLTKTDTVFPIDVARRAMQIEESLKA---NNSLVQPVV 243 (243)
Q Consensus 208 ~v~nK~D~~~~~~~~~~~~~l~~~l~~---~~~~~~pi~ 243 (243)
++-||+|+..+....+..+.+.+++.. .+.++.||+
T Consensus 184 ilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPis 222 (466)
T KOG0466|consen 184 ILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPIS 222 (466)
T ss_pred EEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeeh
Confidence 999999999998888888888887765 344666653
No 371
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.23 E-value=1e-05 Score=72.38 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+++|++|+||||++..|.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988764
No 372
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=98.23 E-value=2.2e-05 Score=66.23 Aligned_cols=136 Identities=16% Similarity=0.200 Sum_probs=75.3
Q ss_pred CCCCCEEEEecCCCCchhHHHHHHhcccc---cccccCCCCce---------------------------EEEEEEE---
Q 026112 89 APDLPEIAFAGRSNVGKSSMLNALTRQWG---VVRTSDKPGLT---------------------------QTINFFK--- 135 (243)
Q Consensus 89 ~~~~~~I~ivG~~naGKSSLin~L~~~~~---~~~vs~~~gtT---------------------------~~~~~~~--- 135 (243)
..+.|.-.+.|+-|||||||+|.++...+ ++..-+.-|-. ..|....
T Consensus 54 ~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gv 133 (391)
T KOG2743|consen 54 GARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGV 133 (391)
T ss_pred CCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHH
Confidence 35678888999999999999999886531 11111111100 0011100
Q ss_pred ----------eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-----HHHHHHHH
Q 026112 136 ----------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-----HELISLME 200 (243)
Q Consensus 136 ----------~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-----~~~~~~l~ 200 (243)
......++.|-|+.++..-. +-.| ...-+..-...|+|+-|+|+.+.....+ -.+-+...
T Consensus 134 raie~lvqkkGkfD~IllETTGlAnPaPia--~~Fw---~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~ 208 (391)
T KOG2743|consen 134 RAIENLVQKKGKFDHILLETTGLANPAPIA--SMFW---LDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATR 208 (391)
T ss_pred HHHHHHHhcCCCcceEEEeccCCCCcHHHH--HHHh---hhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHH
Confidence 12468899999998743211 1112 1222222233799999999875311111 11212222
Q ss_pred hcCCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 201 RSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 201 ~~~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
+....-.+++||.|++...++....+.++
T Consensus 209 QiA~AD~II~NKtDli~~e~~~~l~q~I~ 237 (391)
T KOG2743|consen 209 QIALADRIIMNKTDLVSEEEVKKLRQRIR 237 (391)
T ss_pred HHhhhheeeeccccccCHHHHHHHHHHHH
Confidence 33334467789999999877666555544
No 373
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.22 E-value=1.2e-05 Score=73.44 Aligned_cols=117 Identities=20% Similarity=0.231 Sum_probs=61.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-------ccccccC--CC-C---------ceEEEEEEE--------------eC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-------GVVRTSD--KP-G---------LTQTINFFK--------------LG 137 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-------~~~~vs~--~~-g---------tT~~~~~~~--------------~~ 137 (243)
.+..|+|+|++|+||||++..|.... ++..++. +. + ....+.+.. .+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 46689999999999999998887531 1111110 00 0 000000110 14
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
..+.||||||..... ......+.. +.. .. ....++|+++....... .++++.+... .+.-+|+||+|...
T Consensus 429 ~DLVLIDTaG~s~~D--~~l~eeL~~-L~a----a~-~~a~lLVLpAtss~~Dl-~eii~~f~~~-~~~gvILTKlDEt~ 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRD--RALAAQLNW-LRA----AR-QVTSLLVLPANAHFSDL-DEVVRRFAHA-KPQGVVLTKLDETG 498 (559)
T ss_pred CCEEEecCCCcchhh--HHHHHHHHH-HHH----hh-cCCcEEEEECCCChhHH-HHHHHHHHhh-CCeEEEEecCcCcc
Confidence 689999999975311 111111111 111 11 23467788876442222 2344444443 56779999999854
No 374
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.21 E-value=1.1e-05 Score=62.32 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=18.6
Q ss_pred EEEecCCCCchhHHHHHHhcc
Q 026112 95 IAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~ 115 (243)
|+++|.+|+||||++..+...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999888753
No 375
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.20 E-value=2.1e-05 Score=68.27 Aligned_cols=122 Identities=15% Similarity=0.188 Sum_probs=66.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc---ccccccCCCC-----------ceEEEEEEE---------------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPG-----------LTQTINFFK--------------------- 135 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~---~~~~vs~~~g-----------tT~~~~~~~--------------------- 135 (243)
..|..++.|.-|||||||+|.|+... +.+.+.+.-| ...++....
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 46889999999999999999998642 1111111111 000111100
Q ss_pred ------eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEE
Q 026112 136 ------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVV 209 (243)
Q Consensus 136 ------~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v 209 (243)
......+|.|.|+.++ ..+-..+ +....+...-..+.++.|+|+.......+.. .....+...--++|
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p---~~i~~~~--~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~-~~~~~Qi~~AD~Iv 156 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADP---GPIIQTF--FSHEVLCQRYLLDGVIALVDAVHADEQMNQF-TIAQSQVGYADRIL 156 (318)
T ss_pred HHhccCCCCCEEEEECCCccCH---HHHHHHH--hcChhhcccEEeccEEEEEEhhhhhhhcccc-HHHHHHHHhCCEEE
Confidence 0256789999998752 2221111 0011222223368899999987532211110 01112333445889
Q ss_pred eecCCCCCh
Q 026112 210 LTKTDTVFP 218 (243)
Q Consensus 210 ~nK~D~~~~ 218 (243)
+||+|+.++
T Consensus 157 lnK~Dl~~~ 165 (318)
T PRK11537 157 LTKTDVAGE 165 (318)
T ss_pred EeccccCCH
Confidence 999999975
No 376
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.20 E-value=2.2e-05 Score=70.80 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=38.0
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
..+.++||||-... .+..-+.+..+. ....+|.+++|+|+..+ .......+.....-...-+|+||.|...
T Consensus 176 ~DvVIIDTAGr~~~--d~~lm~El~~l~-----~~~~pdevlLVvda~~g--q~av~~a~~F~~~l~i~gvIlTKlD~~a 246 (437)
T PRK00771 176 ADVIIVDTAGRHAL--EEDLIEEMKEIK-----EAVKPDEVLLVIDATIG--QQAKNQAKAFHEAVGIGGIIITKLDGTA 246 (437)
T ss_pred CCEEEEECCCcccc--hHHHHHHHHHHH-----HHhcccceeEEEecccc--HHHHHHHHHHHhcCCCCEEEEecccCCC
Confidence 47999999996431 111111111111 11237889999998765 2222333332221112457889999753
No 377
>PRK01889 GTPase RsgA; Reviewed
Probab=98.18 E-value=1.3e-06 Score=76.91 Aligned_cols=59 Identities=29% Similarity=0.285 Sum_probs=40.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccC-------CCCceEEEEEEEeCCcEEEEeCCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~-------~~gtT~~~~~~~~~~~~~liDTpG~~~~ 151 (243)
+-+++++|.+|+|||||+|.|++... ..++. ...+|+............++||||+.+.
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~-~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEV-QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcc-cceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhhh
Confidence 45899999999999999999998632 22221 1225555555555555678899998653
No 378
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.13 E-value=2.1e-05 Score=63.73 Aligned_cols=23 Identities=39% Similarity=0.614 Sum_probs=20.8
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+.|+++|++|+|||||++.+++.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999988874
No 379
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.10 E-value=2.3e-05 Score=69.83 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=20.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...++++|++|+||||++..|+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999888753
No 380
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.05 E-value=1.3e-05 Score=63.34 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=44.6
Q ss_pred cEEEEEEeCCCCCChhhHHHHHH--HHhcCCcEEEEeecCCCCChHHHHHHHHHHHHH
Q 026112 176 KRVCLLIDTKWGVKPRDHELISL--MERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 231 (243)
Q Consensus 176 d~v~~vvd~~~~~~~~~~~~~~~--l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~ 231 (243)
|+|++|+|+..++...+..+.+. +...+.|+++|+||+|+.++..+....+.+++.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~ 58 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRRE 58 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhh
Confidence 78999999998777777777777 445679999999999999877766666666544
No 381
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.04 E-value=3e-05 Score=68.36 Aligned_cols=117 Identities=22% Similarity=0.266 Sum_probs=65.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccc-cccccCCCCceEEEEEEE--------------------------------eCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFK--------------------------------LGT 138 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~-~~~vs~~~gtT~~~~~~~--------------------------------~~~ 138 (243)
+..|+++|++|+||||.+-.|..... ...-....-.|.|.-... ...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 66899999999999999988887631 011111222333321100 135
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
++.+|||+|-..- +...+ .-+..+.... ...-+++|++++.. ..+ .++++.....+.. -+++||.|...
T Consensus 283 d~ILVDTaGrs~~-D~~~i-----~el~~~~~~~-~~i~~~Lvlsat~K--~~dlkei~~~f~~~~i~-~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQY-DKEKI-----EELKELIDVS-HSIEVYLVLSATTK--YEDLKEIIKQFSLFPID-GLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCcc-CHHHH-----HHHHHHHhcc-ccceEEEEEecCcc--hHHHHHHHHHhccCCcc-eeEEEcccccC
Confidence 8999999996421 11111 1233344333 24556778887632 223 3555555444333 35579999764
Q ss_pred h
Q 026112 218 P 218 (243)
Q Consensus 218 ~ 218 (243)
.
T Consensus 353 s 353 (407)
T COG1419 353 S 353 (407)
T ss_pred c
Confidence 3
No 382
>PRK10867 signal recognition particle protein; Provisional
Probab=98.03 E-value=8.6e-05 Score=66.86 Aligned_cols=72 Identities=22% Similarity=0.255 Sum_probs=38.0
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
+..+.++||||-... .+........+.. ....+.+++|+|+..+ +......+.+...-...-+|+||.|..
T Consensus 183 ~~DvVIIDTaGrl~~--d~~lm~eL~~i~~-----~v~p~evllVlda~~g--q~av~~a~~F~~~~~i~giIlTKlD~~ 253 (433)
T PRK10867 183 GYDVVIVDTAGRLHI--DEELMDELKAIKA-----AVNPDEILLVVDAMTG--QDAVNTAKAFNEALGLTGVILTKLDGD 253 (433)
T ss_pred CCCEEEEeCCCCccc--CHHHHHHHHHHHH-----hhCCCeEEEEEecccH--HHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 457999999996431 1111111122211 1126778999998643 333333333332212345778999965
Q ss_pred C
Q 026112 217 F 217 (243)
Q Consensus 217 ~ 217 (243)
.
T Consensus 254 ~ 254 (433)
T PRK10867 254 A 254 (433)
T ss_pred c
Confidence 4
No 383
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.02 E-value=7.5e-05 Score=58.84 Aligned_cols=72 Identities=25% Similarity=0.181 Sum_probs=39.9
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHH-HHhcCCcEEEEeecCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL-MERSQTKYQVVLTKTDT 215 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~-l~~~~~p~i~v~nK~D~ 215 (243)
+..+.++||||...- ..+.+ ..+ ..+.. ....+.+++|+|+... ....+.... ....+ ..-+|+||.|.
T Consensus 82 ~~d~viiDt~g~~~~-~~~~l----~~l-~~l~~-~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-~~~viltk~D~ 151 (173)
T cd03115 82 NFDVVIVDTAGRLQI-DENLM----EEL-KKIKR-VVKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-ITGVILTKLDG 151 (173)
T ss_pred CCCEEEEECcccchh-hHHHH----HHH-HHHHh-hcCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-CCEEEEECCcC
Confidence 456899999997431 11111 111 11111 1237889999998533 222233333 33444 46788899998
Q ss_pred CCh
Q 026112 216 VFP 218 (243)
Q Consensus 216 ~~~ 218 (243)
...
T Consensus 152 ~~~ 154 (173)
T cd03115 152 DAR 154 (173)
T ss_pred CCC
Confidence 764
No 384
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.00 E-value=2.7e-05 Score=62.63 Aligned_cols=76 Identities=21% Similarity=0.179 Sum_probs=43.1
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh------HHHHHHHHhcCCcEEEEee
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD------HELISLMERSQTKYQVVLT 211 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~------~~~~~~l~~~~~p~i~v~n 211 (243)
..+.++|+||..+-...-.+. ..+++. +.....--++++++|+.--. +.. ...+.......+|-|=|++
T Consensus 98 ddylifDcPGQIELytH~pVm---~~iv~h-l~~~~F~~c~Vylldsqf~v-D~~KfiSG~lsAlsAMi~lE~P~INvls 172 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVM---PQIVEH-LKQWNFNVCVVYLLDSQFLV-DSTKFISGCLSALSAMISLEVPHINVLS 172 (273)
T ss_pred CCEEEEeCCCeeEEeecChhH---HHHHHH-HhcccCceeEEEEeccchhh-hHHHHHHHHHHHHHHHHHhcCcchhhhh
Confidence 479999999976532222111 122221 11122234577888875322 222 2233333456899999999
Q ss_pred cCCCCCh
Q 026112 212 KTDTVFP 218 (243)
Q Consensus 212 K~D~~~~ 218 (243)
|+|+...
T Consensus 173 KMDLlk~ 179 (273)
T KOG1534|consen 173 KMDLLKD 179 (273)
T ss_pred HHHHhhh
Confidence 9999875
No 385
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.00 E-value=1.7e-05 Score=71.48 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=61.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc-------ccccccCCCC---c-----e----EEEEEE--------------EeCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW-------GVVRTSDKPG---L-----T----QTINFF--------------KLGT 138 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~-------~~~~vs~~~g---t-----T----~~~~~~--------------~~~~ 138 (243)
+..++|+|++|+||||++..|.... ++..++.-+. . + ..+.+. ..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 4588999999999999987776531 1111111000 0 0 000000 0146
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.+.+|||||..... .. ....+..++ .......-+++|+++... ..+ ..+...+...+ +--+++||.|...
T Consensus 301 DlVlIDt~G~~~~d-~~-~~~~L~~ll----~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~~-~~~vI~TKlDet~ 371 (424)
T PRK05703 301 DVILIDTAGRSQRD-KR-LIEELKALI----EFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRLP-LDGLIFTKLDETS 371 (424)
T ss_pred CEEEEeCCCCCCCC-HH-HHHHHHHHH----hccCCCCeEEEEEECCCC--HHHHHHHHHHhCCCC-CCEEEEecccccc
Confidence 89999999974311 11 111122222 211123567788887643 333 24444444433 2368899999864
Q ss_pred h
Q 026112 218 P 218 (243)
Q Consensus 218 ~ 218 (243)
.
T Consensus 372 ~ 372 (424)
T PRK05703 372 S 372 (424)
T ss_pred c
Confidence 3
No 386
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.00 E-value=4.7e-05 Score=72.58 Aligned_cols=117 Identities=18% Similarity=0.146 Sum_probs=62.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccccccc-CCCCceEEE------------------EEE--------------EeCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPGLTQTI------------------NFF--------------KLGT 138 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs-~~~gtT~~~------------------~~~--------------~~~~ 138 (243)
+..|+|+|++|+||||++..|++........ .+.-.|.|. .+. ..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 4578999999999999999998752000000 000000010 000 0145
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc-C-CcEEEEeecCCC
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS-Q-TKYQVVLTKTDT 215 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~-~-~p~i~v~nK~D~ 215 (243)
.+.||||||.... .....+....+ ......+-+++|+|+... ..+ .++.+..... . .+-=+|+||.|.
T Consensus 265 D~VLIDTAGRs~~--d~~l~eel~~l-----~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~i~glIlTKLDE 335 (767)
T PRK14723 265 HLVLIDTVGMSQR--DRNVSEQIAML-----CGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGEDVDGCIITKLDE 335 (767)
T ss_pred CEEEEeCCCCCcc--CHHHHHHHHHH-----hccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCCCCEEEEeccCC
Confidence 8999999996431 11122222211 112335678899998743 222 2344444332 1 234577999997
Q ss_pred CC
Q 026112 216 VF 217 (243)
Q Consensus 216 ~~ 217 (243)
..
T Consensus 336 t~ 337 (767)
T PRK14723 336 AT 337 (767)
T ss_pred CC
Confidence 64
No 387
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.99 E-value=2.9e-05 Score=66.62 Aligned_cols=123 Identities=21% Similarity=0.279 Sum_probs=64.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-----c-------------------------cccccCCCCceEEEEEE------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----G-------------------------VVRTSDKPGLTQTINFF------ 134 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-----~-------------------------~~~vs~~~gtT~~~~~~------ 134 (243)
....|+++|-.|+||||.|-.|+... + ...++...|.......+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 35678999999999999998887521 0 00111111110000000
Q ss_pred -EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc-CccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeec
Q 026112 135 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV-SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK 212 (243)
Q Consensus 135 -~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK 212 (243)
.-+..+.++||+|=..+ ...+...++.+.+-...... ..+-+++++|+..+ ++...-.+.....-.=-=+++||
T Consensus 218 kar~~DvvliDTAGRLhn--k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG--qnal~QAk~F~eav~l~GiIlTK 293 (340)
T COG0552 218 KARGIDVVLIDTAGRLHN--KKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG--QNALSQAKIFNEAVGLDGIILTK 293 (340)
T ss_pred HHcCCCEEEEeCcccccC--chhHHHHHHHHHHHhccccCCCCceEEEEEEcccC--hhHHHHHHHHHHhcCCceEEEEe
Confidence 01679999999994332 22233333333332211111 13558889999876 44444444443332223467899
Q ss_pred CCCCC
Q 026112 213 TDTVF 217 (243)
Q Consensus 213 ~D~~~ 217 (243)
+|-..
T Consensus 294 lDgtA 298 (340)
T COG0552 294 LDGTA 298 (340)
T ss_pred cccCC
Confidence 99543
No 388
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.99 E-value=2.2e-05 Score=60.85 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=36.2
Q ss_pred cEEEEEEeCCCCCChhhHHHH-HHHHhcCCcEEEEeecCCCCChHHHHH
Q 026112 176 KRVCLLIDTKWGVKPRDHELI-SLMERSQTKYQVVLTKTDTVFPIDVAR 223 (243)
Q Consensus 176 d~v~~vvd~~~~~~~~~~~~~-~~l~~~~~p~i~v~nK~D~~~~~~~~~ 223 (243)
|++++|+|+..+....+..+. ..+...++|+++|+||+|+.+..+...
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~ 49 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRK 49 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHH
Confidence 689999999876555555554 456667899999999999987654433
No 389
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.98 E-value=2.7e-05 Score=67.59 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=41.6
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC--------Chhh---HHHHHHHHh----
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--------KPRD---HELISLMER---- 201 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~--------~~~~---~~~~~~l~~---- 201 (243)
+..+.++|++|... .+..|..+.. .+++|++|+|.++-. ...- ...++.+-.
T Consensus 160 ~~~~~~~DvgGq~~------~R~kW~~~f~-------~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 160 NLKFRMFDVGGQRS------ERKKWIHCFE-------DVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ceEEEEECCCCCcc------cchhHHHHhC-------CCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 45788999999643 2334544332 389999999976420 0111 122222221
Q ss_pred cCCcEEEEeecCCCCC
Q 026112 202 SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 202 ~~~p~i~v~nK~D~~~ 217 (243)
.+.|+++++||.|++.
T Consensus 227 ~~~pill~~NK~D~f~ 242 (317)
T cd00066 227 ANTSIILFLNKKDLFE 242 (317)
T ss_pred cCCCEEEEccChHHHH
Confidence 2689999999999753
No 390
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.97 E-value=0.00015 Score=65.30 Aligned_cols=72 Identities=21% Similarity=0.214 Sum_probs=38.9
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
+..+.++||||.... .+.....+..+.. ....+.+++|+|+..+ .......+.+...-...-+|+||.|..
T Consensus 182 ~~DvVIIDTaGr~~~--d~~l~~eL~~i~~-----~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 182 GFDVVIVDTAGRLQI--DEELMEELAAIKE-----ILNPDEILLVVDAMTG--QDAVNTAKTFNERLGLTGVVLTKLDGD 252 (428)
T ss_pred CCCEEEEeCCCcccc--CHHHHHHHHHHHH-----hhCCceEEEEEeccch--HHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 457999999996431 1111111222211 1236788999998643 333334444332212346778999964
Q ss_pred C
Q 026112 217 F 217 (243)
Q Consensus 217 ~ 217 (243)
.
T Consensus 253 ~ 253 (428)
T TIGR00959 253 A 253 (428)
T ss_pred c
Confidence 3
No 391
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.95 E-value=4e-05 Score=67.45 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
+...++++|++|+||||++..|..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999988875
No 392
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=0.00016 Score=64.32 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~ 114 (243)
...|+++|++|+||||.+..|..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999988875
No 393
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.91 E-value=4.2e-05 Score=65.09 Aligned_cols=50 Identities=16% Similarity=0.154 Sum_probs=38.0
Q ss_pred cccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHH
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA 222 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~ 222 (243)
....+|+|++|+|+..+....+..+.+.+. +.|+++|+||+|+.++....
T Consensus 18 ~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~~~~~ 67 (276)
T TIGR03596 18 KLKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLADPAVTK 67 (276)
T ss_pred HHhhCCEEEEEEeCCCCCCCCChhHHHHHC--CCCEEEEEEccccCCHHHHH
Confidence 344499999999998776666666666653 68999999999997654333
No 394
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.89 E-value=0.00015 Score=55.16 Aligned_cols=117 Identities=11% Similarity=0.137 Sum_probs=61.3
Q ss_pred EecCCCCchhHHHHHHhcccccccccC-CCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCc
Q 026112 97 FAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSL 175 (243)
Q Consensus 97 ivG~~naGKSSLin~L~~~~~~~~vs~-~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (243)
.-|..|+||||+--.+.... +..+. .--...|.+....++.+.++|||+... .. ....+. .+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~--~~~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~---~~-----~~~~l~-------~a 67 (139)
T cd02038 5 TSGKGGVGKTNISANLALAL--AKLGKRVLLLDADLGLANLDYDYIIIDTGAGIS---DN-----VLDFFL-------AA 67 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHH--HHCCCcEEEEECCCCCCCCCCCEEEEECCCCCC---HH-----HHHHHH-------hC
Confidence 44889999999976665431 10000 000001111111237899999998532 11 011221 28
Q ss_pred cEEEEEEeCCCCCChhhHHHHHHHHhc--CCcEEEEeecCCCCChHHHHHHHHHHHHHH
Q 026112 176 KRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (243)
Q Consensus 176 d~v~~vvd~~~~~~~~~~~~~~~l~~~--~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l 232 (243)
|.++++++.+..-.......++.+... ..++.+|+|+++.. .+..+....+++.+
T Consensus 68 D~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~--~~~~~~~~~~~~~~ 124 (139)
T cd02038 68 DEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP--KEGKKVFKRLSNVS 124 (139)
T ss_pred CeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH--HHHHHHHHHHHHHH
Confidence 999999987642112223455555432 35788999999743 23333444444433
No 395
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.00023 Score=62.20 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=28.6
Q ss_pred HHhhhhhhhhHHHhhcccCCCCCCCCCEEEEecCCCCchhHHHHHHhc
Q 026112 67 EENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
...++.....++.-............-.|.++|-.|+||||.+-.|+.
T Consensus 76 ~~~vf~eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~ 123 (483)
T KOG0780|consen 76 QKAVFDELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAY 123 (483)
T ss_pred HHHHHHHHHHHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHH
Confidence 333344444444333333222323344678999999999999988775
No 396
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=3.7e-05 Score=60.61 Aligned_cols=116 Identities=12% Similarity=0.056 Sum_probs=68.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--C-CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++++++|.-|.||||+.+..+.....-...+..|.......... | .++..|||+|...-. ..-..
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~g----------glrdg 78 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKG----------GLRDG 78 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeec----------ccccc
Confidence 3678999999999999999887655222223333344444333322 3 679999999964311 11112
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH--hcCCcEEEEeecCCCCChH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME--RSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~--~~~~p~i~v~nK~D~~~~~ 219 (243)
|+-. ..+.++++|....++-.. ..+.+.+. ..++|+++..||.|...+.
T Consensus 79 yyI~---~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~ 130 (216)
T KOG0096|consen 79 YYIQ---GQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARK 130 (216)
T ss_pred cEEe---cceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccc
Confidence 2222 567778888654322221 22332222 1258999999999987654
No 397
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.86 E-value=0.00013 Score=55.79 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=68.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCC---ceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~g---tT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
..+|.++|.+..|||||+-...+...-.......| ..+.+........+.+||.-|.++ +....
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~-------------~~n~l 86 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQRE-------------FINML 86 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHh-------------hhccC
Confidence 46899999999999999988888632111111122 233334444466789999999643 12111
Q ss_pred HhcccCccEEEEEEeCCCCCCh-hhHHHHHHHHhcC---CcEEEEeecCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERSQ---TKYQVVLTKTDTV 216 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~-~~~~~~~~l~~~~---~p~i~v~nK~D~~ 216 (243)
--...++-++++++|-+.+.+- .-.++.......+ +| ++|.+|.|++
T Consensus 87 Piac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~f 137 (205)
T KOG1673|consen 87 PIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLF 137 (205)
T ss_pred ceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhh
Confidence 1223447789999997654221 2245555554443 45 5679999986
No 398
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.84 E-value=0.00015 Score=66.05 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..++|+|++|+||||++..|++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 458899999999999999999864
No 399
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.83 E-value=0.00012 Score=62.04 Aligned_cols=119 Identities=22% Similarity=0.295 Sum_probs=63.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-----ccccccC--CC-C---------ceEEEEEEE-----------------e
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSD--KP-G---------LTQTINFFK-----------------L 136 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs~--~~-g---------tT~~~~~~~-----------------~ 136 (243)
+..+++++|++|+||||++..|.... ....++. .. + ...++.+.. .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 45799999999999999998887541 1111110 00 0 000111110 1
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
+..+.++||||-.... .+.+ +.+..+. .. ...+.+++|+|++... ..-.++++..... .+--+++||.|..
T Consensus 154 ~~D~ViIDt~Gr~~~~-~~~l-~el~~~~----~~-~~~~~~~LVl~a~~~~-~d~~~~~~~f~~~-~~~~~I~TKlDet 224 (270)
T PRK06731 154 RVDYILIDTAGKNYRA-SETV-EEMIETM----GQ-VEPDYICLTLSASMKS-KDMIEIITNFKDI-HIDGIVFTKFDET 224 (270)
T ss_pred CCCEEEEECCCCCcCC-HHHH-HHHHHHH----hh-hCCCeEEEEEcCccCH-HHHHHHHHHhCCC-CCCEEEEEeecCC
Confidence 4589999999964211 1111 1122222 21 1256789999986431 2223444444442 3346778999986
Q ss_pred Ch
Q 026112 217 FP 218 (243)
Q Consensus 217 ~~ 218 (243)
..
T Consensus 225 ~~ 226 (270)
T PRK06731 225 AS 226 (270)
T ss_pred CC
Confidence 53
No 400
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.82 E-value=7.5e-05 Score=58.83 Aligned_cols=50 Identities=18% Similarity=0.170 Sum_probs=36.1
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~ 220 (243)
......+|++++|+|++.+....+..+++.+ .+.|+++|+||+|+.++..
T Consensus 14 ~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~~~ 63 (171)
T cd01856 14 KEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADPKK 63 (171)
T ss_pred HHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCChHH
Confidence 3334459999999999876555555555544 2579999999999976543
No 401
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.82 E-value=8.4e-05 Score=65.19 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=41.5
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC--------Chh---hHHHHHHHHh----
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--------KPR---DHELISLMER---- 201 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~--------~~~---~~~~~~~l~~---- 201 (243)
+..+.++|..|.+. .++.|..+. . ++++|++|+|.++-. ... ...+++.+-.
T Consensus 183 ~~~~~~~DvgGqr~------~R~kW~~~f----~---~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 183 KLFFRMFDVGGQRS------ERKKWIHCF----D---NVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred CeEEEEEecCCchh------hhhhHHHHh----C---CCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 44688999999532 234454433 2 389999999977410 011 1222222221
Q ss_pred cCCcEEEEeecCCCCC
Q 026112 202 SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 202 ~~~p~i~v~nK~D~~~ 217 (243)
.+.|+++++||.|++.
T Consensus 250 ~~~piil~~NK~D~~~ 265 (342)
T smart00275 250 ANTSIILFLNKIDLFE 265 (342)
T ss_pred cCCcEEEEEecHHhHH
Confidence 2589999999999863
No 402
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.82 E-value=7.1e-05 Score=65.41 Aligned_cols=70 Identities=19% Similarity=0.095 Sum_probs=54.6
Q ss_pred HHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHH-hc-CCcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME-RS-QTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~-~~-~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
+...+......+|+|+.|+|+.+++.....++-+++. .. +...|+|+||+|+++.+.+..++.+++.++-
T Consensus 136 Y~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~p 207 (435)
T KOG2484|consen 136 YDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGP 207 (435)
T ss_pred HHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCC
Confidence 3444444455599999999999988887777777774 33 3899999999999999888888888877643
No 403
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.78 E-value=0.00038 Score=53.87 Aligned_cols=120 Identities=14% Similarity=0.104 Sum_probs=60.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCC-C---------CCCC------ccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLP-G---------YGFA------YAK 154 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTp-G---------~~~~------~~~ 154 (243)
...+|++.|+||+||||++..+...-......-.-+.|..+........|.++|+. | ++.. ..-
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v 83 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNV 83 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeH
Confidence 34699999999999999998887642100011111233333322223356677776 2 1111 011
Q ss_pred hHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC---CChhhHHHHHHHHhcCCcEEEEeecCCC
Q 026112 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG---VKPRDHELISLMERSQTKYQVVLTKTDT 215 (243)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~---~~~~~~~~~~~l~~~~~p~i~v~nK~D~ 215 (243)
+..++.....+++. ...+|++ ++|---+ .+....+.++.+-..+.|++.++.+-+.
T Consensus 84 ~~le~i~~~al~rA---~~~aDvI--IIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 84 EGLEEIAIPALRRA---LEEADVI--IIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred HHHHHHhHHHHHHH---hhcCCEE--EEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccC
Confidence 11111111222222 2236765 4663222 2233345566666678899998887654
No 404
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.73 E-value=0.0001 Score=60.32 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=32.7
Q ss_pred cCccEEEEEEeCCCCCChhhHHHHHHHHhcC-CcEEEEeecCCCC
Q 026112 173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTV 216 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~-~p~i~v~nK~D~~ 216 (243)
+.+|.++.|+|.+..--.....+-++....+ .++.+|+||+|..
T Consensus 154 ~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 154 EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 3489999999987543233345556666778 8999999999965
No 405
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.72 E-value=1.8e-05 Score=74.69 Aligned_cols=77 Identities=19% Similarity=0.312 Sum_probs=49.6
Q ss_pred cEEEEeCCCCCCC---ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCC-C-CChhhHHHHHHHHhcCCcEEEEeecC
Q 026112 139 KLCLVDLPGYGFA---YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-G-VKPRDHELISLMERSQTKYQVVLTKT 213 (243)
Q Consensus 139 ~~~liDTpG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~-~-~~~~~~~~~~~l~~~~~p~i~v~nK~ 213 (243)
.++++|+||+... ..++.+...+..+...|... .+++++.+.+.. . .+.....+.......+.+.+.|++|.
T Consensus 133 ~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~---~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~ 209 (657)
T KOG0446|consen 133 NLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEK---PNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKF 209 (657)
T ss_pred hhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccc---cchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhH
Confidence 6889999998653 34556777778888888776 566666665332 1 12222344444455567788888888
Q ss_pred CCCCh
Q 026112 214 DTVFP 218 (243)
Q Consensus 214 D~~~~ 218 (243)
|+++.
T Consensus 210 Dlmdk 214 (657)
T KOG0446|consen 210 DFMDK 214 (657)
T ss_pred Hhhhc
Confidence 87644
No 406
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.71 E-value=0.00046 Score=61.28 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=19.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
..-.|+++|--|+||||..-.|..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~ 122 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAK 122 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHH
Confidence 345778999999999999877764
No 407
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.68 E-value=0.00014 Score=64.38 Aligned_cols=148 Identities=20% Similarity=0.280 Sum_probs=78.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccc------------cc--ccccCCCC---ceEEEEEEE-----------eCCcEE
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQW------------GV--VRTSDKPG---LTQTINFFK-----------LGTKLC 141 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~------------~~--~~vs~~~g---tT~~~~~~~-----------~~~~~~ 141 (243)
.+..-|+++|+--+|||||+.++...- +. ......+| .|..+.|.+ ...++.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 466789999999999999999987521 00 11122233 233333332 135789
Q ss_pred EEeCCCCCCCcc----chH----HHHHHHH----HHH-------HHHhcccCccEEEEEEeCCCC-CC-----hhhHHHH
Q 026112 142 LVDLPGYGFAYA----KEE----VKDAWEE----LVK-------EYVSTRVSLKRVCLLIDTKWG-VK-----PRDHELI 196 (243)
Q Consensus 142 liDTpG~~~~~~----~~~----~~~~~~~----~~~-------~~~~~~~~~d~v~~vvd~~~~-~~-----~~~~~~~ 196 (243)
++||-||.-..+ .++ +...|.. +-. +.+.. +..-++++-.|.+-+ +. .....++
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~d-HSTIGiVVTTDGSi~dipRe~Y~eAEervI 173 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITD-HSTIGIVVTTDGSITDIPRENYVEAEERVI 173 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceecc-CCceeEEEecCCCccCCChHHHHHHHHHHH
Confidence 999999742110 000 0111110 111 11110 112234445565432 21 2336788
Q ss_pred HHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 197 SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 197 ~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
+.|+..++|+++++|-.+=..++ .......+.+ .++.++.|+
T Consensus 174 ~ELk~igKPFvillNs~~P~s~e-t~~L~~eL~e---kY~vpVlpv 215 (492)
T PF09547_consen 174 EELKEIGKPFVILLNSTKPYSEE-TQELAEELEE---KYDVPVLPV 215 (492)
T ss_pred HHHHHhCCCEEEEEeCCCCCCHH-HHHHHHHHHH---HhCCcEEEe
Confidence 99999999999999988855443 3333333333 344455543
No 408
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.66 E-value=0.0032 Score=54.07 Aligned_cols=27 Identities=22% Similarity=0.371 Sum_probs=24.3
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
+.+..|+++|..++||||||..|-+.+
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e 76 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSE 76 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhccc
Confidence 467899999999999999999998874
No 409
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.61 E-value=0.0007 Score=50.20 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.8
Q ss_pred EEEecCCCCchhHHHHHHhcc
Q 026112 95 IAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~ 115 (243)
|++.|++|+|||++++.++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 678999999999999999987
No 410
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.61 E-value=0.00011 Score=67.06 Aligned_cols=112 Identities=16% Similarity=0.126 Sum_probs=62.8
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCc-----eEEEEEEEe-CCcEEEEeCCCCCCCccchHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-----TQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gt-----T~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (243)
...+.+.++|+.|+|||.|+++++|+ .... ...++ +........ ...+.+-|.+-. .. .
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr-~~~~--~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~-----------~ 487 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGR-SMSD--NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQ-----------D 487 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhcc-cccc--ccccCCCCceeeeeeeeccccceEEEeecCcc-cc-----------c
Confidence 35678999999999999999999997 2222 22222 222111111 122333333321 10 0
Q ss_pred HHHHHHhcccCccEEEEEEeCCCCCChhhH-HHHHHH-HhcCCcEEEEeecCCCCChH
Q 026112 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLM-ERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l-~~~~~p~i~v~nK~D~~~~~ 219 (243)
+... ....+|++++++|++++-..... .+++.- .....|+++|.+|+|+.+..
T Consensus 488 ~l~~---ke~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~ 542 (625)
T KOG1707|consen 488 FLTS---KEAACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVP 542 (625)
T ss_pred cccC---ccceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhh
Confidence 0000 00238999999999865333221 222211 12478999999999998654
No 411
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.59 E-value=0.00013 Score=58.40 Aligned_cols=43 Identities=14% Similarity=-0.110 Sum_probs=30.4
Q ss_pred CccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 174 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 174 ~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
.+|++++|+|++.........+ .....+.|+++|+||+|+...
T Consensus 34 ~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~ 76 (190)
T cd01855 34 KKALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLLPK 76 (190)
T ss_pred CCcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcCCC
Confidence 3899999999876543333333 122346899999999999754
No 412
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00024 Score=63.99 Aligned_cols=111 Identities=21% Similarity=0.251 Sum_probs=71.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccccccc-CCCCc---------------eEEE---EEE-E---------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPGL---------------TQTI---NFF-K--------------- 135 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs-~~~gt---------------T~~~---~~~-~--------------- 135 (243)
+..++.++.....|||||...|..+.. +++ ..+|- |... ..+ .
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAg--Iis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAG--IISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhc--eeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 445677778889999999999998642 222 22331 2111 111 0
Q ss_pred eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCC
Q 026112 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT 215 (243)
Q Consensus 136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~ 215 (243)
.+.-+.+||.||+.+.+ .-+.. ..+-.|+.++|+|.-.++--+...++...-...+.-++|+||.|.
T Consensus 96 ~~FLiNLIDSPGHVDFS----------SEVTA---ALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFS----------SEVTA---ALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDR 162 (842)
T ss_pred cceeEEeccCCCcccch----------hhhhh---eeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhH
Confidence 13468899999986521 11111 222379999999987777777777776666556766788999996
Q ss_pred C
Q 026112 216 V 216 (243)
Q Consensus 216 ~ 216 (243)
.
T Consensus 163 A 163 (842)
T KOG0469|consen 163 A 163 (842)
T ss_pred H
Confidence 4
No 413
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.55 E-value=0.00037 Score=59.64 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=36.1
Q ss_pred ccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
...+|+|++|+|+..+....+..+.+.+. +.|+++|+||+|+.+..
T Consensus 22 l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~ 67 (287)
T PRK09563 22 LKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADPE 67 (287)
T ss_pred hhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCHH
Confidence 34499999999998776666655655554 68999999999997653
No 414
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.49 E-value=0.00022 Score=58.39 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=38.8
Q ss_pred CcEEEEeCCCCCCCcc-chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCCh-hhH-HH---HHHHHhcCCcEEEEee
Q 026112 138 TKLCLVDLPGYGFAYA-KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-RDH-EL---ISLMERSQTKYQVVLT 211 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~-~~~-~~---~~~l~~~~~p~i~v~n 211 (243)
..+.++|+||..+-.. .+.....++ ++....-.-+++.++|+-.--.+ ... .+ +.-+-....|-+=|+.
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~-----~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlS 171 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFR-----KLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLS 171 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHH-----HHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhh
Confidence 4799999999654321 121222222 22222223445667776421111 111 11 1112234789999999
Q ss_pred cCCCCChH
Q 026112 212 KTDTVFPI 219 (243)
Q Consensus 212 K~D~~~~~ 219 (243)
|+|+...-
T Consensus 172 K~Dl~~~y 179 (290)
T KOG1533|consen 172 KADLLKKY 179 (290)
T ss_pred HhHHHHhh
Confidence 99997543
No 415
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.48 E-value=7.1e-05 Score=61.84 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=22.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
+=-|+++|++|||||||+|.+.|-.
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999999964
No 416
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.47 E-value=9.7e-05 Score=56.14 Aligned_cols=53 Identities=23% Similarity=0.201 Sum_probs=32.0
Q ss_pred EEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE-eCCcEEEEeCCC
Q 026112 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LGTKLCLVDLPG 147 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~-~~~~~~liDTpG 147 (243)
|+|+|++|+|||||++.|.+..........+.+|+...... .+..+.++|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~ 55 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEE 55 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHH
Confidence 68899999999999999998732122233344555443221 234455555433
No 417
>PRK12289 GTPase RsgA; Reviewed
Probab=97.46 E-value=0.00046 Score=60.68 Aligned_cols=66 Identities=14% Similarity=0.178 Sum_probs=42.0
Q ss_pred cCccEEEEEEeCCCC-CChhh-HHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 173 VSLKRVCLLIDTKWG-VKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~-~~~~~-~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
.++|.+++|+|...+ +.... ..++..+...++|+++|+||+|+..+.+... +.+.+...+..++++
T Consensus 88 aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~----~~~~~~~~g~~v~~i 155 (352)
T PRK12289 88 ANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQ----WQDRLQQWGYQPLFI 155 (352)
T ss_pred hcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHH----HHHHHHhcCCeEEEE
Confidence 349999999998753 22221 2344444556899999999999987654432 334444555555554
No 418
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.39 E-value=0.00014 Score=58.29 Aligned_cols=39 Identities=15% Similarity=0.043 Sum_probs=29.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI 131 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~ 131 (243)
+..|+|+|++|+|||||++.|+.... ......+-|||..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~-~~~~~v~~TTR~~ 42 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHP-DFLFSISCTTRAP 42 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCC-ccccccCccCCCC
Confidence 45788999999999999999998732 2334455677654
No 419
>PRK13695 putative NTPase; Provisional
Probab=97.38 E-value=0.00062 Score=53.69 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
+|+++|.+|+|||||+..+.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999987654
No 420
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.34 E-value=0.00068 Score=49.64 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
+|+++|..|+|||+|+.++...
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~ 23 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQF 23 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcC
Confidence 7899999999999999999655
No 421
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.32 E-value=0.0021 Score=46.46 Aligned_cols=97 Identities=16% Similarity=0.231 Sum_probs=52.5
Q ss_pred ecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccE
Q 026112 98 AGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKR 177 (243)
Q Consensus 98 vG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 177 (243)
-+..|+||||+--.|.... +......-.-.|.... .+..+.++|||+.... . ....+. .+|.
T Consensus 6 ~~kgg~gkt~~~~~la~~~--~~~~~~~~~l~d~d~~-~~~D~IIiDtpp~~~~---~-----~~~~l~-------~aD~ 67 (106)
T cd03111 6 GAKGGVGATTLAANLAVAL--AKEAGRRVLLVDLDLQ-FGDDYVVVDLGRSLDE---V-----SLAALD-------QADR 67 (106)
T ss_pred CCCCCCcHHHHHHHHHHHH--HhcCCCcEEEEECCCC-CCCCEEEEeCCCCcCH---H-----HHHHHH-------HcCe
Confidence 3788999999876666541 1110111011111111 1337999999996431 0 011222 1899
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHhcC----CcEEEEeec
Q 026112 178 VCLLIDTKWGVKPRDHELISLMERSQ----TKYQVVLTK 212 (243)
Q Consensus 178 v~~vvd~~~~~~~~~~~~~~~l~~~~----~p~i~v~nK 212 (243)
++++++.+..-...-..+++.+...+ .++.+|+|+
T Consensus 68 vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 68 VFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred EEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 99999876432233345566665543 357788885
No 422
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.31 E-value=0.00019 Score=56.74 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.|+|+|++|+|||||+|.+.|-
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhc
Confidence 4568999999999999999999986
No 423
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.31 E-value=0.00027 Score=45.92 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.3
Q ss_pred CEEEEecCCCCchhHHHHHHhc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~ 114 (243)
...+|.|++|+|||||+.++.-
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988764
No 424
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.30 E-value=0.00014 Score=57.60 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=21.1
Q ss_pred EEEEecCCCCchhHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.|+++|++|||||||++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 68999999999999999999863
No 425
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.26 E-value=0.00085 Score=58.52 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=42.8
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC--CChhh---------HHHHHHHHhc---
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRD---------HELISLMERS--- 202 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~--~~~~~---------~~~~~~l~~~--- 202 (243)
+..+.++|.+|.+. -++.|-.+. .++++|++|++.++- ...++ ..+++.+-..
T Consensus 194 ~~~f~~~DvGGQRs------eRrKWihcF-------e~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F 260 (354)
T KOG0082|consen 194 GLKFRMFDVGGQRS------ERKKWIHCF-------EDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF 260 (354)
T ss_pred CCceEEEeCCCcHH------HhhhHHHhh-------cCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc
Confidence 66899999999642 233444433 338999999986531 11111 2233333221
Q ss_pred -CCcEEEEeecCCCCCh
Q 026112 203 -QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 203 -~~p~i~v~nK~D~~~~ 218 (243)
..++++.+||.|++.+
T Consensus 261 ~~tsiiLFLNK~DLFeE 277 (354)
T KOG0082|consen 261 ANTSIILFLNKKDLFEE 277 (354)
T ss_pred ccCcEEEEeecHHHHHH
Confidence 5789999999999753
No 426
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.26 E-value=0.0021 Score=50.36 Aligned_cols=64 Identities=11% Similarity=0.079 Sum_probs=40.2
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCC-cEEEEeecCCCCC
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVF 217 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-p~i~v~nK~D~~~ 217 (243)
.+.++|||+-... . ....+ ..+|.++++++....-......+++.+...+. ...+|+|++|...
T Consensus 64 d~viiD~p~~~~~---~---------~~~~l---~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER---G---------FITAI---APADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH---H---------HHHHH---HhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 7999999985321 0 11111 12899999998764322333456666666554 4678999998754
No 427
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=97.25 E-value=1.7e-05 Score=62.43 Aligned_cols=131 Identities=15% Similarity=0.177 Sum_probs=70.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
...++.++|+-++||||++...+........-..-|.......... -.+..+||.+|... +..+.+
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQer----------fg~mtr 93 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQER----------FGNMTR 93 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhh----------hcceEE
Confidence 3468999999999999999887765210000001111111111111 13577999999521 112222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH-h------cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-R------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN 235 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~-~------~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~ 235 (243)
-|+. ++++.++|+|.+...+.+. ..+.+.+- . ..+|+++..||||.-.. ...+....+.++..++
T Consensus 94 Vyyk---ea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~-a~~~~~~~~d~f~ken 166 (229)
T KOG4423|consen 94 VYYK---EAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKS-AKNEATRQFDNFKKEN 166 (229)
T ss_pred EEec---CCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChH-hhhhhHHHHHHHHhcc
Confidence 2333 3888899999876644433 22322221 1 13678999999998643 2333333444444443
No 428
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.25 E-value=0.0024 Score=44.29 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=42.7
Q ss_pred EEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccC
Q 026112 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS 174 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (243)
+++.|..|+||||+...|...- .. . |. .+.. .+ .+.++|+||....... . .......
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l--~~-~---g~--~v~~--~~-d~iivD~~~~~~~~~~---------~---~~~~~~~ 58 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAAL--AK-R---GK--RVLL--ID-DYVLIDTPPGLGLLVL---------L---CLLALLA 58 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--HH-C---CC--eEEE--EC-CEEEEeCCCCccchhh---------h---hhhhhhh
Confidence 6788999999999999888762 11 1 11 1111 11 7999999996542110 0 0111123
Q ss_pred ccEEEEEEeCCCC
Q 026112 175 LKRVCLLIDTKWG 187 (243)
Q Consensus 175 ~d~v~~vvd~~~~ 187 (243)
+|.++++++....
T Consensus 59 ~~~vi~v~~~~~~ 71 (99)
T cd01983 59 ADLVIIVTTPEAL 71 (99)
T ss_pred CCEEEEecCCchh
Confidence 8999999887643
No 429
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.00052 Score=60.26 Aligned_cols=134 Identities=16% Similarity=0.156 Sum_probs=80.3
Q ss_pred CCCCCCCEEEEecCCCCchhHHHHHHhccc----------------ccccccC-------------CCCceEEEEE---E
Q 026112 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQW----------------GVVRTSD-------------KPGLTQTINF---F 134 (243)
Q Consensus 87 ~~~~~~~~I~ivG~~naGKSSLin~L~~~~----------------~~~~vs~-------------~~gtT~~~~~---~ 134 (243)
.+.....++.|+|.--+||||.-..|.... .....+. ..|.|..+-. .
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 344567899999999999999987766421 0011111 1223444322 2
Q ss_pred EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCCh-------hhHHHHHHHHhcC-CcE
Q 026112 135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-------RDHELISLMERSQ-TKY 206 (243)
Q Consensus 135 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~-------~~~~~~~~l~~~~-~p~ 206 (243)
.....+.++|+||+- .++..++..+..+|+-++|+.+..+.-. +..+...+.+..+ ...
T Consensus 154 te~~~ftiLDApGHk-------------~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~l 220 (501)
T KOG0459|consen 154 TENKRFTILDAPGHK-------------SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHL 220 (501)
T ss_pred ecceeEEeeccCccc-------------ccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceE
Confidence 236789999999974 3455566666778999999887432111 2233334444444 468
Q ss_pred EEEeecCCCCChH----HHHHHHHHHHHHHh
Q 026112 207 QVVLTKTDTVFPI----DVARRAMQIEESLK 233 (243)
Q Consensus 207 i~v~nK~D~~~~~----~~~~~~~~l~~~l~ 233 (243)
++++||+|-.... ...+..+.+...+.
T Consensus 221 Vv~vNKMddPtvnWs~eRy~E~~~k~~~fLr 251 (501)
T KOG0459|consen 221 IVLINKMDDPTVNWSNERYEECKEKLQPFLR 251 (501)
T ss_pred EEEEEeccCCccCcchhhHHHHHHHHHHHHH
Confidence 9999999977432 23344444444444
No 430
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.24 E-value=0.0047 Score=48.74 Aligned_cols=82 Identities=17% Similarity=0.047 Sum_probs=52.2
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
.+.+.++|||+... + .....+ ..+|.+++++..+......-..+++.++..+.|+.+|+||+|..
T Consensus 92 ~~d~viiDtpp~~~----~--------~~~~~l---~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 92 GAELIIIDGPPGIG----C--------PVIASL---TGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred CCCEEEEECcCCCc----H--------HHHHHH---HcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 56899999997532 1 011111 22899999998764322333567777777888999999999975
Q ss_pred ChHHHHHHHHHHHHHHhhCCCc
Q 026112 217 FPIDVARRAMQIEESLKANNSL 238 (243)
Q Consensus 217 ~~~~~~~~~~~l~~~l~~~~~~ 238 (243)
.. ....+++.++..+.+
T Consensus 157 ~~-----~~~~~~~~~~~~~~~ 173 (179)
T cd03110 157 DE-----IAEEIEDYCEEEGIP 173 (179)
T ss_pred cc-----hHHHHHHHHHHcCCC
Confidence 43 122344555555543
No 431
>PRK00098 GTPase RsgA; Reviewed
Probab=97.23 E-value=0.0011 Score=57.07 Aligned_cols=67 Identities=18% Similarity=0.125 Sum_probs=41.5
Q ss_pred cCccEEEEEEeCCCCCC-hh-hHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 173 VSLKRVCLLIDTKWGVK-PR-DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~-~~-~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
.++|.+++|+|+..+.. .. ...++..+...++|+++|+||+|+....+. ...+.+.+...+..++++
T Consensus 79 aniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~---~~~~~~~~~~~g~~v~~v 147 (298)
T PRK00098 79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEE---ARELLALYRAIGYDVLEL 147 (298)
T ss_pred ecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHH---HHHHHHHHHHCCCeEEEE
Confidence 45899999999865422 22 134555566778999999999999743221 222333344445555554
No 432
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.22 E-value=0.00026 Score=53.26 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|++..
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 34588999999999999999999984
No 433
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.20 E-value=0.00015 Score=57.47 Aligned_cols=38 Identities=26% Similarity=0.199 Sum_probs=27.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI 131 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~ 131 (243)
+.-+++.|++|+|||||+++|+... ...-.+..|||..
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~p 41 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKP 41 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCC
Confidence 4578899999999999999999884 2222233456554
No 434
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.19 E-value=0.0019 Score=54.04 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=33.8
Q ss_pred CccEEEEEEeCCCCC-Chhh-HHHHHHHHhcCCcEEEEeecCCCCChHH
Q 026112 174 SLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 174 ~~d~v~~vvd~~~~~-~~~~-~~~~~~l~~~~~p~i~v~nK~D~~~~~~ 220 (243)
.+|.+++|+|...+. +... ..++..+...++|+++|+||+|+.+...
T Consensus 36 n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~ 84 (245)
T TIGR00157 36 NIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDED 84 (245)
T ss_pred cCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHH
Confidence 389999999987543 2222 3455555567899999999999976543
No 435
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.19 E-value=0.00033 Score=57.54 Aligned_cols=26 Identities=35% Similarity=0.294 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+=.|+|+|++|||||||+|.+.+-.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44578999999999999999999873
No 436
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.18 E-value=0.00044 Score=52.33 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|+++|+||||||||...|...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999866
No 437
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.0017 Score=53.54 Aligned_cols=117 Identities=17% Similarity=0.172 Sum_probs=64.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccccc----ccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR----TSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~----vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.|+|+++|.--+||||.-...+.+- ... .......|++-.. ..-..+.+||.||..+.-.+.- .++.+.+.
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkM-sPneTlflESTski~~d~is-~sfinf~v~dfPGQ~~~Fd~s~---D~e~iF~~ 101 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKM-SPNETLFLESTSKITRDHIS-NSFINFQVWDFPGQMDFFDPSF---DYEMIFRG 101 (347)
T ss_pred CceEEEEeecccCcchhhheeeecc-CCCceeEeeccCcccHhhhh-hhhcceEEeecCCccccCCCcc---CHHHHHhc
Confidence 4889999999999999988777651 111 1111111221100 0124688999999654321110 01222222
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHh-----cCCcEEEEeecCCCCChHH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~-----~~~p~i~v~nK~D~~~~~~ 220 (243)
+-.+++|+|+.....+.-..+...+.. .++.+=+.+.|.|.+..+.
T Consensus 102 -------~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~ 152 (347)
T KOG3887|consen 102 -------VGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDF 152 (347)
T ss_pred -------cCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhh
Confidence 678999999864322111111111111 2467888999999987654
No 438
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.17 E-value=0.0044 Score=52.95 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=24.4
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+.|+++++|.+|.|||++++.+...+
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 467899999999999999999999874
No 439
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.16 E-value=0.0037 Score=46.54 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=21.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...+.++|++|+|||+|++.+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999987
No 440
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.13 E-value=0.0015 Score=41.53 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=25.1
Q ss_pred ccEEEEEEeCCC--CCCh-hhHHHHHHHHhc--CCcEEEEeecCC
Q 026112 175 LKRVCLLIDTKW--GVKP-RDHELISLMERS--QTKYQVVLTKTD 214 (243)
Q Consensus 175 ~d~v~~vvd~~~--~~~~-~~~~~~~~l~~~--~~p~i~v~nK~D 214 (243)
.++|+|++|.+. |.+- ....+++.++.. +.|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 688999999765 4433 335677777765 799999999998
No 441
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.13 E-value=0.00037 Score=51.25 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
+|+|.|+|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999987
No 442
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.12 E-value=0.00047 Score=56.09 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=21.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+|+|++|||||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3456788999999999999999865
No 443
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.07 E-value=0.00049 Score=54.68 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|+|||||++.|+|.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 4568999999999999999999997
No 444
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.02 E-value=0.0022 Score=54.86 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=34.9
Q ss_pred cCccEEEEEEeCCCCC-Chhh-HHHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 173 VSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~-~~~~-~~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
.++|.+++|+|+..+. +... ..++..+...++|+++|+||+|+.++.
T Consensus 77 anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~ 125 (287)
T cd01854 77 ANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDE 125 (287)
T ss_pred EeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChH
Confidence 3489999999987664 3222 345555666789999999999998653
No 445
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.005 Score=53.32 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.3
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
...-.|+++|.-|+|||||++.|.++.
T Consensus 186 tdf~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 186 TDFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CCeeEEEeecCCCccHHHHHHHHhccC
Confidence 345688999999999999999999863
No 446
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.02 E-value=0.00058 Score=55.72 Aligned_cols=26 Identities=23% Similarity=0.251 Sum_probs=23.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999973
No 447
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.00045 Score=60.09 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
+--++++|++|||||||++.++|-.
T Consensus 29 Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 29 GEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3367899999999999999999964
No 448
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.01 E-value=0.00052 Score=55.76 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.9
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+.+..|+|+|++|||||||.++|.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999875
No 449
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.99 E-value=0.00055 Score=55.64 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=21.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+ .++++|++|+|||||++.|+|.
T Consensus 26 g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 26 G-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred C-cEEEECCCCCCHHHHHHHHhCC
Confidence 5 8999999999999999999986
No 450
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.99 E-value=0.00062 Score=55.30 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45588999999999999999999973
No 451
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.98 E-value=0.00069 Score=53.77 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|+|||||++.++..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 4568999999999999999999753
No 452
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.98 E-value=0.00074 Score=54.58 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+..|+|+|++|+|||||.+.|.+..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35578999999999999999999873
No 453
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.98 E-value=0.0006 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=20.5
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
|.|+++|+.|+|||||+..|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998876
No 454
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.97 E-value=0.00067 Score=55.41 Aligned_cols=26 Identities=35% Similarity=0.309 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 45589999999999999999999973
No 455
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.97 E-value=0.00064 Score=54.32 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+-.++++|++|+|||||+++|++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999999986
No 456
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.96 E-value=0.00069 Score=56.06 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999973
No 457
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.0025 Score=57.21 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=42.9
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhcCCc---EEEEee
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERSQTK---YQVVLT 211 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~~~p---~i~v~n 211 (243)
|..+.++||+|=... ...+...+..++ .....|.|++|-.+.-+-...+ ..+-+.+.....| --++++
T Consensus 466 gfDVvLiDTAGR~~~--~~~lm~~l~k~~-----~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~lt 538 (587)
T KOG0781|consen 466 GFDVVLIDTAGRMHN--NAPLMTSLAKLI-----KVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLT 538 (587)
T ss_pred CCCEEEEeccccccC--ChhHHHHHHHHH-----hcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEE
Confidence 568999999995431 222222233332 2345899999976654422222 2333444444444 347899
Q ss_pred cCCCCCh
Q 026112 212 KTDTVFP 218 (243)
Q Consensus 212 K~D~~~~ 218 (243)
|+|.++.
T Consensus 539 k~dtv~d 545 (587)
T KOG0781|consen 539 KFDTVDD 545 (587)
T ss_pred eccchhh
Confidence 9998764
No 458
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.96 E-value=0.00073 Score=54.85 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||+.+|-+-+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 45589999999999999999998753
No 459
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.94 E-value=0.0034 Score=55.51 Aligned_cols=71 Identities=13% Similarity=-0.009 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH-HHHHHHHHHHHHhhCC
Q 026112 161 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANN 236 (243)
Q Consensus 161 ~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~-~~~~~~~l~~~l~~~~ 236 (243)
+..+...+.. .++++++|+|+.+.......++.+.+. +.|+++|+||+|+..... .....+.+++.+...+
T Consensus 53 f~~~l~~~~~---~~~~Il~VvD~~d~~~s~~~~l~~~~~--~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g 124 (360)
T TIGR03597 53 FLNLLNSLGD---SNALIVYVVDIFDFEGSLIPELKRFVG--GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG 124 (360)
T ss_pred HHHHHhhccc---CCcEEEEEEECcCCCCCccHHHHHHhC--CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC
Confidence 3444444433 378999999986543333334444432 689999999999975431 2233333444444444
No 460
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.93 E-value=0.00075 Score=54.62 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4558999999999999999999997
No 461
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.93 E-value=0.00076 Score=56.51 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|+.|||||||+++|.+-
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4557899999999999999999984
No 462
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.92 E-value=0.00082 Score=53.75 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|+|..
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34588999999999999999999973
No 463
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=96.92 E-value=0.0094 Score=51.79 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=22.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
.+|+++++|++++|||||...|++
T Consensus 102 ~GPrv~vVGp~d~GKsTl~r~L~n 125 (415)
T KOG2749|consen 102 YGPRVMVVGPTDVGKSTLCRILLN 125 (415)
T ss_pred cCCEEEEECCCccchHHHHHHHHH
Confidence 479999999999999999999886
No 464
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.91 E-value=0.00083 Score=54.69 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999973
No 465
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.90 E-value=0.00084 Score=55.21 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999997
No 466
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.89 E-value=0.00085 Score=54.91 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|+|..
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999973
No 467
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.89 E-value=0.00089 Score=52.32 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|.|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999973
No 468
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.89 E-value=0.00088 Score=54.86 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4558899999999999999999997
No 469
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.88 E-value=0.00095 Score=51.09 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45578999999999999999999973
No 470
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.88 E-value=0.0042 Score=51.92 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.2
Q ss_pred EEEecCCCCchhHHHHHHhcc
Q 026112 95 IAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~ 115 (243)
|+++|.|||||||+...|...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999865
No 471
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.88 E-value=0.00091 Score=54.43 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|+|..
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45588999999999999999999973
No 472
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.87 E-value=0.00093 Score=53.71 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45589999999999999999999973
No 473
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.87 E-value=0.00093 Score=54.31 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999973
No 474
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.87 E-value=0.00089 Score=54.14 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|+|..
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999973
No 475
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.86 E-value=0.00094 Score=54.35 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4558999999999999999999996
No 476
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.86 E-value=0.00094 Score=54.85 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=23.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|+|..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999973
No 477
>PRK12288 GTPase RsgA; Reviewed
Probab=96.85 E-value=0.0055 Score=53.86 Aligned_cols=69 Identities=12% Similarity=-0.002 Sum_probs=41.9
Q ss_pred cCccEEEEEEeCCCCCChhh-HHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 173 VSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
.++|.+++|++....++... ..++......++|.++|+||+|+.+..+... ...+.+.+...+..++++
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~-~~~~~~~y~~~g~~v~~v 188 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAF-VNEQLDIYRNIGYRVLMV 188 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHH-HHHHHHHHHhCCCeEEEE
Confidence 34889888888664443332 2344455666899999999999987543222 223333444455555554
No 478
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.85 E-value=0.00098 Score=54.14 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578999999999999999999973
No 479
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.85 E-value=0.0021 Score=53.09 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+|.|++|||||||++.|.+.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999986
No 480
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.84 E-value=0.00098 Score=55.37 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|+|..
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45589999999999999999999863
No 481
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.84 E-value=0.00092 Score=54.72 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999973
No 482
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.84 E-value=0.0009 Score=52.85 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..+.++|+|++|+|||||+++|...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3568899999999999999998865
No 483
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.84 E-value=0.00092 Score=54.70 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|.|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999873
No 484
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.84 E-value=0.006 Score=43.55 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=40.4
Q ss_pred EEEec-CCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc
Q 026112 95 IAFAG-RSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (243)
Q Consensus 95 I~ivG-~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (243)
|++.| ..|+||||+--.|.... +. ...+-.-.|.. ....+.++|||+.... . ....+..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~--~~-~~~~vl~~d~d---~~~d~viiD~p~~~~~---~-----~~~~l~~------ 61 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAAL--AR-RGKRVLLIDLD---PQYDYIIIDTPPSLGL---L-----TRNALAA------ 61 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH--Hh-CCCcEEEEeCC---CCCCEEEEeCcCCCCH---H-----HHHHHHH------
Confidence 56666 77999999987766542 11 11110111111 1267999999996431 0 0112222
Q ss_pred CccEEEEEEeCCC
Q 026112 174 SLKRVCLLIDTKW 186 (243)
Q Consensus 174 ~~d~v~~vvd~~~ 186 (243)
+|.++++++.+.
T Consensus 62 -ad~viv~~~~~~ 73 (104)
T cd02042 62 -ADLVLIPVQPSP 73 (104)
T ss_pred -CCEEEEeccCCH
Confidence 899999998764
No 485
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.84 E-value=0.001 Score=54.42 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|+|..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999999973
No 486
>PRK01889 GTPase RsgA; Reviewed
Probab=96.83 E-value=0.0043 Score=54.76 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=35.5
Q ss_pred cCccEEEEEEeCCCCCChh-hHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 173 VSLKRVCLLIDTKWGVKPR-DHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
.++|.+++|++....+... ...++..+...+++.++|+||+|+.++
T Consensus 111 ANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~ 157 (356)
T PRK01889 111 ANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED 157 (356)
T ss_pred EeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC
Confidence 4589999999987555542 235666667788999999999999865
No 487
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.83 E-value=0.00094 Score=52.78 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..++|+|++|||||||++.|...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999875
No 488
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.83 E-value=0.001 Score=54.18 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45589999999999999999999973
No 489
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.82 E-value=0.0011 Score=53.52 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=23.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999973
No 490
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.82 E-value=0.0011 Score=54.25 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=22.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|+|||||++.|+|.
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458899999999999999999997
No 491
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.00086 Score=53.74 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
++-.|+++|++|||||||+|.+.|-
T Consensus 30 ~ge~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 30 SGELVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred CCCEEEEEcCCCccHHHHHHHHhcC
Confidence 3457889999999999999999985
No 492
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=96.81 E-value=0.0016 Score=55.00 Aligned_cols=60 Identities=22% Similarity=0.217 Sum_probs=42.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccC-CCCceEEEEEEEe------CCcEEEEeCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFKL------GTKLCLVDLPGYGF 150 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~-~~gtT~~~~~~~~------~~~~~liDTpG~~~ 150 (243)
+...|+|+|+..+|||.|+|.|++....-.+++ ...+|..+-.+.. +..+.++||.|+.+
T Consensus 20 ~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 20 PVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp BEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred CEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence 455789999999999999999998632223333 3356666544431 34699999999976
No 493
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.81 E-value=0.0011 Score=52.70 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45588999999999999999999973
No 494
>PRK07261 topology modulation protein; Provisional
Probab=96.81 E-value=0.00098 Score=52.58 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
+|+|+|.+|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999999765
No 495
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.81 E-value=0.0012 Score=52.36 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45588999999999999999999873
No 496
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.81 E-value=0.0011 Score=44.13 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=19.6
Q ss_pred EEEecCCCCchhHHHHHHhcc
Q 026112 95 IAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~ 115 (243)
|++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999999876
No 497
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.0011 Score=54.71 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999973
No 498
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.80 E-value=0.0011 Score=53.84 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999973
No 499
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.80 E-value=0.0011 Score=55.67 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|+|..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999973
No 500
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.80 E-value=0.0011 Score=53.27 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=23.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999973
Done!