Query 026112
Match_columns 243
No_of_seqs 233 out of 2755
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 05:53:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dhe_A Probable GTP-binding pr 99.9 1.1E-24 3.8E-29 177.2 16.8 149 86-234 23-175 (223)
2 3pqc_A Probable GTP-binding pr 99.9 6.1E-24 2.1E-28 168.6 18.0 158 85-243 16-174 (195)
3 1svi_A GTP-binding protein YSX 99.9 5E-24 1.7E-28 169.6 16.3 158 86-243 17-175 (195)
4 3gee_A MNME, tRNA modification 99.9 6.9E-25 2.4E-29 197.9 8.4 197 11-221 157-361 (476)
5 3iev_A GTP-binding protein ERA 99.9 1.3E-21 4.5E-26 167.6 14.5 149 90-243 8-162 (308)
6 1xzp_A Probable tRNA modificat 99.9 5.2E-23 1.8E-27 185.8 4.0 186 15-218 173-365 (482)
7 1wf3_A GTP-binding protein; GT 99.9 4.4E-21 1.5E-25 163.8 15.6 122 93-220 8-134 (301)
8 3geh_A MNME, tRNA modification 99.9 7.4E-23 2.5E-27 184.0 4.1 191 14-219 152-346 (462)
9 2qtf_A Protein HFLX, GTP-bindi 99.8 1.1E-20 3.7E-25 165.2 11.6 196 11-219 100-308 (364)
10 3t5d_A Septin-7; GTP-binding p 99.8 1.5E-19 5.1E-24 152.2 16.2 149 92-242 8-183 (274)
11 3iby_A Ferrous iron transport 99.8 9.8E-21 3.3E-25 158.1 7.1 143 93-243 2-147 (256)
12 1pui_A ENGB, probable GTP-bind 99.8 3.7E-19 1.3E-23 143.1 14.9 156 87-242 21-178 (210)
13 1mky_A Probable GTP-binding pr 99.8 8.8E-20 3E-24 163.4 12.2 120 93-217 2-124 (439)
14 2hjg_A GTP-binding protein ENG 99.8 1.3E-19 4.5E-24 162.1 12.5 121 92-218 3-126 (436)
15 3i8s_A Ferrous iron transport 99.8 3.5E-20 1.2E-24 156.2 7.4 122 92-218 3-127 (274)
16 4dcu_A GTP-binding protein ENG 99.8 2.3E-19 7.9E-24 161.4 11.7 122 91-218 22-146 (456)
17 2hjg_A GTP-binding protein ENG 99.8 1.2E-19 4E-24 162.5 9.6 149 90-243 173-329 (436)
18 3lxx_A GTPase IMAP family memb 99.8 5.8E-19 2E-23 145.5 12.8 128 89-222 26-164 (239)
19 2qu8_A Putative nucleolar GTP- 99.8 1.2E-18 4E-23 142.5 13.7 148 90-243 27-185 (228)
20 2dyk_A GTP-binding protein; GT 99.8 8.3E-19 2.8E-23 134.7 11.8 119 93-218 2-123 (161)
21 2gj8_A MNME, tRNA modification 99.8 1.1E-18 3.7E-23 136.7 12.0 119 91-216 3-128 (172)
22 3lxw_A GTPase IMAP family memb 99.8 8.5E-19 2.9E-23 145.5 12.0 144 91-238 20-178 (247)
23 1ega_A Protein (GTP-binding pr 99.8 8.7E-19 3E-23 149.5 12.3 126 92-224 8-138 (301)
24 2cxx_A Probable GTP-binding pr 99.8 3.4E-18 1.2E-22 134.8 14.2 136 93-233 2-150 (190)
25 4dcu_A GTP-binding protein ENG 99.8 6.9E-19 2.3E-23 158.3 11.3 150 90-243 193-349 (456)
26 3a1s_A Iron(II) transport prot 99.8 7.6E-19 2.6E-23 146.8 10.4 118 92-218 5-125 (258)
27 3b1v_A Ferrous iron uptake tra 99.8 7E-19 2.4E-23 148.0 9.0 117 92-217 3-121 (272)
28 1jwy_B Dynamin A GTPase domain 99.8 2.6E-18 9E-23 146.9 11.9 126 90-219 22-214 (315)
29 2aka_B Dynamin-1; fusion prote 99.8 9.4E-18 3.2E-22 142.2 14.0 126 90-219 24-208 (299)
30 3j2k_7 ERF3, eukaryotic polype 99.8 1.4E-17 4.7E-22 149.1 15.6 133 90-235 15-191 (439)
31 3k53_A Ferrous iron transport 99.8 1.6E-18 5.5E-23 145.6 8.5 139 92-242 3-145 (271)
32 2xtp_A GTPase IMAP family memb 99.8 8.2E-18 2.8E-22 140.2 12.6 125 90-218 20-154 (260)
33 1h65_A Chloroplast outer envel 99.8 1.1E-17 3.8E-22 140.4 13.5 124 91-219 38-170 (270)
34 3r7w_A Gtpase1, GTP-binding pr 99.8 1.3E-17 4.6E-22 142.5 14.2 142 92-242 3-161 (307)
35 2lkc_A Translation initiation 99.7 7.3E-19 2.5E-23 137.3 5.5 114 90-218 6-122 (178)
36 1mky_A Probable GTP-binding pr 99.7 9.6E-18 3.3E-22 150.1 13.3 139 90-233 178-324 (439)
37 1wb1_A Translation elongation 99.7 8.4E-18 2.9E-22 152.1 12.5 140 91-243 18-169 (482)
38 2wji_A Ferrous iron transport 99.7 2.5E-18 8.6E-23 133.5 7.7 116 93-217 4-122 (165)
39 4a9a_A Ribosome-interacting GT 99.7 3E-18 1E-22 149.8 8.4 119 88-215 68-194 (376)
40 2qpt_A EH domain-containing pr 99.7 2.9E-17 1E-21 150.7 14.6 135 90-229 63-244 (550)
41 3q72_A GTP-binding protein RAD 99.7 1E-17 3.5E-22 129.3 9.8 114 92-219 2-122 (166)
42 1wxq_A GTP-binding protein; st 99.7 8.1E-18 2.8E-22 148.6 10.3 87 93-187 1-114 (397)
43 1upt_A ARL1, ADP-ribosylation 99.7 4.4E-18 1.5E-22 131.9 7.5 114 91-219 6-124 (171)
44 1z0f_A RAB14, member RAS oncog 99.7 2.3E-17 7.9E-22 128.6 11.4 138 91-243 14-158 (179)
45 2j69_A Bacterial dynamin-like 99.7 4E-18 1.4E-22 160.4 7.6 117 91-218 68-245 (695)
46 2wjg_A FEOB, ferrous iron tran 99.7 9E-18 3.1E-22 132.4 8.3 118 92-218 7-127 (188)
47 2efe_B Small GTP-binding prote 99.7 2.9E-17 9.9E-22 128.5 11.2 138 91-243 11-155 (181)
48 4bas_A ADP-ribosylation factor 99.7 1.2E-17 4.1E-22 132.8 9.1 115 90-219 15-143 (199)
49 3llu_A RAS-related GTP-binding 99.7 4.6E-17 1.6E-21 129.8 12.6 122 89-220 17-146 (196)
50 3qq5_A Small GTP-binding prote 99.7 3E-18 1E-22 152.3 6.1 121 89-220 31-157 (423)
51 1d2e_A Elongation factor TU (E 99.7 8.8E-17 3E-21 142.1 15.4 139 92-243 3-165 (397)
52 1z0j_A RAB-22, RAS-related pro 99.7 1.8E-17 6.2E-22 128.1 9.7 114 92-218 6-126 (170)
53 1lnz_A SPO0B-associated GTP-bi 99.7 2.6E-18 8.9E-23 148.9 5.4 140 92-243 158-310 (342)
54 1kk1_A EIF2gamma; initiation o 99.7 5.2E-17 1.8E-21 144.2 13.9 141 90-243 8-180 (410)
55 2nzj_A GTP-binding protein REM 99.7 3E-17 1E-21 127.6 10.8 115 92-218 4-126 (175)
56 2fh5_B SR-beta, signal recogni 99.7 6.6E-17 2.3E-21 130.3 13.1 126 91-233 6-145 (214)
57 2c78_A Elongation factor TU-A; 99.7 4.6E-17 1.6E-21 144.3 13.0 140 91-243 10-174 (405)
58 1zun_B Sulfate adenylate trans 99.7 7.6E-17 2.6E-21 144.1 14.5 140 91-243 23-204 (434)
59 2x2e_A Dynamin-1; nitration, h 99.7 5.2E-17 1.8E-21 141.5 12.9 126 91-219 30-213 (353)
60 2fg5_A RAB-22B, RAS-related pr 99.7 2.9E-17 1E-21 130.4 10.2 138 91-243 22-166 (192)
61 2ged_A SR-beta, signal recogni 99.7 6.5E-17 2.2E-21 128.1 12.2 132 90-234 46-187 (193)
62 2bov_A RAla, RAS-related prote 99.7 4E-17 1.4E-21 130.4 11.0 135 90-242 12-156 (206)
63 1zj6_A ADP-ribosylation factor 99.7 1.7E-17 5.8E-22 131.1 8.7 113 91-218 15-132 (187)
64 3def_A T7I23.11 protein; chlor 99.7 9.9E-17 3.4E-21 134.1 13.8 122 91-217 35-165 (262)
65 1ek0_A Protein (GTP-binding pr 99.7 2.6E-17 9E-22 127.0 9.5 113 93-218 4-123 (170)
66 3izq_1 HBS1P, elongation facto 99.7 4.1E-17 1.4E-21 151.4 12.5 140 90-243 165-352 (611)
67 1u8z_A RAS-related protein RAL 99.7 3.9E-17 1.4E-21 125.6 10.1 134 92-243 4-147 (168)
68 3clv_A RAB5 protein, putative; 99.7 2.8E-17 9.6E-22 130.5 9.5 137 91-243 6-184 (208)
69 2h57_A ADP-ribosylation factor 99.7 1E-17 3.6E-22 132.6 7.0 114 91-218 20-141 (190)
70 1fzq_A ADP-ribosylation factor 99.7 2.1E-17 7E-22 130.3 8.6 114 91-219 15-133 (181)
71 1z06_A RAS-related protein RAB 99.7 4.5E-17 1.6E-21 128.8 10.5 115 91-218 19-142 (189)
72 3p26_A Elongation factor 1 alp 99.7 5.4E-17 1.9E-21 146.9 12.4 131 91-234 32-204 (483)
73 3sjy_A Translation initiation 99.7 7.8E-17 2.7E-21 142.8 13.1 140 90-243 6-172 (403)
74 1r2q_A RAS-related protein RAB 99.7 4.9E-17 1.7E-21 125.5 10.4 137 92-243 6-149 (170)
75 2p5s_A RAS and EF-hand domain 99.7 1.8E-17 6E-22 132.4 8.0 115 90-217 26-147 (199)
76 1s0u_A EIF-2-gamma, translatio 99.7 1.1E-16 3.7E-21 142.0 13.6 141 90-243 6-178 (408)
77 1kao_A RAP2A; GTP-binding prot 99.7 4.1E-17 1.4E-21 125.4 9.5 110 93-218 4-123 (167)
78 2a9k_A RAS-related protein RAL 99.7 7.2E-17 2.4E-21 126.6 10.9 135 91-243 17-161 (187)
79 1wms_A RAB-9, RAB9, RAS-relate 99.7 5.4E-17 1.9E-21 126.5 10.1 114 91-217 6-130 (177)
80 1r8s_A ADP-ribosylation factor 99.7 4.6E-17 1.6E-21 125.3 9.5 111 93-218 1-116 (164)
81 2il1_A RAB12; G-protein, GDP, 99.7 4E-17 1.4E-21 129.7 9.4 115 91-218 25-146 (192)
82 3tkl_A RAS-related protein RAB 99.7 6.2E-17 2.1E-21 128.3 10.5 114 91-219 15-137 (196)
83 1zbd_A Rabphilin-3A; G protein 99.7 7.2E-17 2.5E-21 129.0 10.9 114 92-218 8-128 (203)
84 1ksh_A ARF-like protein 2; sma 99.7 6.2E-17 2.1E-21 127.5 10.1 114 91-219 17-135 (186)
85 4dsu_A GTPase KRAS, isoform 2B 99.7 4.8E-17 1.7E-21 127.9 9.5 133 92-243 4-146 (189)
86 3bc1_A RAS-related protein RAB 99.7 8.7E-17 3E-21 126.8 10.8 115 91-218 10-142 (195)
87 2g6b_A RAS-related protein RAB 99.7 4.2E-17 1.5E-21 127.4 8.7 114 91-218 9-131 (180)
88 3t5g_A GTP-binding protein RHE 99.7 1.5E-17 5.2E-22 130.3 6.1 135 91-243 5-149 (181)
89 2oil_A CATX-8, RAS-related pro 99.7 4.4E-17 1.5E-21 129.2 8.6 137 91-242 24-167 (193)
90 1nrj_B SR-beta, signal recogni 99.7 2.2E-16 7.5E-21 127.6 12.8 120 90-222 10-139 (218)
91 2fn4_A P23, RAS-related protei 99.7 3.2E-17 1.1E-21 128.0 7.6 113 90-218 7-129 (181)
92 2gf9_A RAS-related protein RAB 99.7 3.6E-17 1.2E-21 129.4 7.8 115 91-218 21-142 (189)
93 2erx_A GTP-binding protein DI- 99.7 7.6E-17 2.6E-21 124.7 9.5 114 92-218 3-124 (172)
94 2e87_A Hypothetical protein PH 99.7 4.1E-16 1.4E-20 136.0 15.2 141 90-242 165-315 (357)
95 2h17_A ADP-ribosylation factor 99.7 1.4E-17 4.7E-22 131.0 5.3 113 91-218 20-137 (181)
96 2elf_A Protein translation elo 99.7 1.4E-16 4.7E-21 139.6 12.1 123 94-241 23-153 (370)
97 3t1o_A Gliding protein MGLA; G 99.7 1.9E-16 6.5E-21 125.3 11.9 134 91-242 13-171 (198)
98 4djt_A GTP-binding nuclear pro 99.7 2.2E-17 7.4E-22 133.6 6.4 137 91-242 10-154 (218)
99 3cph_A RAS-related protein SEC 99.7 1E-16 3.6E-21 128.8 10.3 113 90-217 18-139 (213)
100 1c1y_A RAS-related protein RAP 99.7 8.4E-17 2.9E-21 123.9 9.2 110 93-218 4-123 (167)
101 3reg_A RHO-like small GTPase; 99.7 1.6E-17 5.6E-22 131.9 5.2 112 91-218 22-142 (194)
102 1z2a_A RAS-related protein RAB 99.7 6E-17 2.1E-21 124.9 8.3 114 92-218 5-124 (168)
103 1g16_A RAS-related protein SEC 99.7 6E-17 2.1E-21 125.1 8.2 111 92-217 3-122 (170)
104 1f60_A Elongation factor EEF1A 99.7 3.4E-17 1.2E-21 147.3 7.8 140 91-243 6-192 (458)
105 1z08_A RAS-related protein RAB 99.7 1.3E-16 4.3E-21 123.4 10.0 136 92-242 6-148 (170)
106 1jny_A EF-1-alpha, elongation 99.7 1.8E-16 6.2E-21 141.7 12.3 133 91-236 5-181 (435)
107 2qag_A Septin-2, protein NEDD5 99.7 5E-16 1.7E-20 135.6 14.6 150 92-243 37-214 (361)
108 2bme_A RAB4A, RAS-related prot 99.7 9.2E-17 3.1E-21 126.3 8.9 136 91-243 9-153 (186)
109 1zd9_A ADP-ribosylation factor 99.7 6.9E-17 2.4E-21 127.8 8.2 114 91-218 21-139 (188)
110 2y8e_A RAB-protein 6, GH09086P 99.7 7.5E-17 2.6E-21 125.6 8.2 112 92-218 14-134 (179)
111 1x3s_A RAS-related protein RAB 99.7 9.9E-17 3.4E-21 126.9 8.7 113 92-217 15-135 (195)
112 2ce2_X GTPase HRAS; signaling 99.7 2.3E-16 7.7E-21 121.0 10.5 110 93-218 4-123 (166)
113 2hup_A RAS-related protein RAB 99.7 2.4E-16 8.2E-21 126.2 10.9 112 91-217 28-148 (201)
114 2bcg_Y Protein YP2, GTP-bindin 99.7 1.1E-16 3.7E-21 128.3 8.8 136 91-243 7-151 (206)
115 2a5j_A RAS-related protein RAB 99.7 6.9E-17 2.4E-21 128.1 7.5 114 91-217 20-140 (191)
116 3mca_A HBS1, elongation factor 99.7 6.4E-18 2.2E-22 156.3 1.6 134 90-237 175-352 (592)
117 3kkq_A RAS-related protein M-R 99.7 1E-16 3.4E-21 125.8 8.2 112 91-218 17-138 (183)
118 3tw8_B RAS-related protein RAB 99.7 4.2E-17 1.4E-21 127.3 5.9 113 91-218 8-128 (181)
119 2j1l_A RHO-related GTP-binding 99.7 4.3E-16 1.5E-20 126.0 12.0 115 91-221 33-156 (214)
120 2gf0_A GTP-binding protein DI- 99.7 2.7E-16 9.2E-21 124.9 10.6 114 91-217 7-128 (199)
121 4gzl_A RAS-related C3 botulinu 99.7 1.2E-16 4.1E-21 128.3 8.4 114 91-220 29-151 (204)
122 2hxs_A RAB-26, RAS-related pro 99.7 1.2E-16 4.1E-21 124.6 8.0 114 91-217 5-129 (178)
123 2x77_A ADP-ribosylation factor 99.7 4.3E-17 1.5E-21 128.8 5.5 113 91-218 21-138 (189)
124 3con_A GTPase NRAS; structural 99.7 2.9E-16 9.9E-21 124.0 10.3 110 92-217 21-140 (190)
125 2b6h_A ADP-ribosylation factor 99.7 1.2E-16 4.2E-21 127.0 7.8 114 90-218 27-145 (192)
126 1mh1_A RAC1; GTP-binding, GTPa 99.7 2.1E-16 7.1E-21 124.0 9.0 112 92-219 5-125 (186)
127 2yc2_C IFT27, small RAB-relate 99.7 2E-16 6.7E-21 126.4 9.0 136 92-243 20-171 (208)
128 2atx_A Small GTP binding prote 99.7 2.8E-16 9.6E-21 124.6 9.8 113 91-219 17-138 (194)
129 3dz8_A RAS-related protein RAB 99.7 8.6E-17 2.9E-21 127.5 6.6 115 91-218 22-143 (191)
130 3zvr_A Dynamin-1; hydrolase, D 99.7 1.4E-15 4.8E-20 143.0 15.9 126 91-220 50-234 (772)
131 1ky3_A GTP-binding protein YPT 99.7 2.2E-16 7.4E-21 123.3 8.7 115 91-218 7-133 (182)
132 2iwr_A Centaurin gamma 1; ANK 99.7 2.6E-16 9E-21 122.9 8.9 107 91-216 6-121 (178)
133 3oes_A GTPase rhebl1; small GT 99.7 7.7E-17 2.6E-21 128.9 6.0 113 90-218 22-144 (201)
134 2ew1_A RAS-related protein RAB 99.7 2.8E-16 9.7E-21 126.1 9.3 113 91-218 25-146 (201)
135 2gco_A H9, RHO-related GTP-bin 99.7 3.2E-16 1.1E-20 125.3 9.6 114 92-220 25-146 (201)
136 3q85_A GTP-binding protein REM 99.7 4E-16 1.4E-20 120.6 9.6 135 92-242 2-146 (169)
137 3cpj_B GTP-binding protein YPT 99.7 9.2E-17 3.1E-21 130.7 6.2 138 91-243 12-156 (223)
138 1m2o_B GTP-binding protein SAR 99.7 2.8E-16 9.5E-21 124.8 8.8 111 92-217 23-138 (190)
139 2atv_A RERG, RAS-like estrogen 99.7 7.6E-16 2.6E-20 122.5 11.3 111 91-218 27-147 (196)
140 3t34_A Dynamin-related protein 99.7 2.9E-16 9.9E-21 137.0 9.6 124 91-219 33-219 (360)
141 2o52_A RAS-related protein RAB 99.6 3.4E-16 1.2E-20 125.2 8.9 115 91-218 24-145 (200)
142 3tr5_A RF-3, peptide chain rel 99.6 4.6E-16 1.6E-20 141.9 10.7 129 92-234 13-164 (528)
143 1vg8_A RAS-related protein RAB 99.6 2.4E-16 8.3E-21 126.0 7.7 112 91-217 7-131 (207)
144 2fv8_A H6, RHO-related GTP-bin 99.6 3.3E-16 1.1E-20 125.8 8.4 113 92-220 25-146 (207)
145 2fu5_C RAS-related protein RAB 99.6 7.1E-17 2.4E-21 126.7 4.3 112 92-218 8-128 (183)
146 3cbq_A GTP-binding protein REM 99.6 4.2E-16 1.4E-20 124.4 8.8 115 90-218 21-145 (195)
147 2f7s_A C25KG, RAS-related prot 99.6 8.8E-16 3E-20 123.9 10.7 111 91-218 24-156 (217)
148 1g7s_A Translation initiation 99.6 4.8E-16 1.7E-20 143.5 10.1 111 91-217 4-136 (594)
149 3ihw_A Centg3; RAS, centaurin, 99.6 4.2E-16 1.4E-20 123.2 8.3 106 90-216 18-132 (184)
150 2j0v_A RAC-like GTP-binding pr 99.6 3.5E-16 1.2E-20 125.9 7.9 114 91-220 8-130 (212)
151 2q3h_A RAS homolog gene family 99.6 7E-16 2.4E-20 123.0 9.2 113 90-218 18-139 (201)
152 3q3j_B RHO-related GTP-binding 99.6 3E-16 1E-20 127.0 7.2 112 90-217 25-145 (214)
153 3bwd_D RAC-like GTP-binding pr 99.6 1.3E-16 4.6E-21 124.8 4.7 114 91-220 7-129 (182)
154 3avx_A Elongation factor TS, e 99.6 3.2E-15 1.1E-19 144.9 15.0 141 90-243 294-458 (1289)
155 1f6b_A SAR1; gtpases, N-termin 99.6 4.1E-16 1.4E-20 124.6 7.4 111 92-217 25-140 (198)
156 3h2y_A GTPase family protein; 99.6 3.1E-17 1.1E-21 143.6 0.9 139 92-234 160-304 (368)
157 2qag_B Septin-6, protein NEDD5 99.6 4.4E-15 1.5E-19 131.4 14.6 151 91-242 41-215 (427)
158 3c5c_A RAS-like protein 12; GD 99.6 3.8E-16 1.3E-20 123.6 7.1 110 91-217 20-141 (187)
159 1r5b_A Eukaryotic peptide chai 99.6 6.8E-16 2.3E-20 139.2 9.1 132 91-235 42-217 (467)
160 1moz_A ARL1, ADP-ribosylation 99.6 8.7E-16 3E-20 120.3 8.4 113 91-218 17-134 (183)
161 3izy_P Translation initiation 99.6 4.9E-17 1.7E-21 148.2 1.4 112 91-217 3-118 (537)
162 3gj0_A GTP-binding nuclear pro 99.6 3.9E-16 1.3E-20 126.6 6.3 115 91-218 14-134 (221)
163 2zej_A Dardarin, leucine-rich 99.6 5.2E-15 1.8E-19 116.6 12.4 116 93-222 3-131 (184)
164 1zo1_I IF2, translation initia 99.6 2.5E-16 8.4E-21 142.5 5.0 112 91-217 3-117 (501)
165 2xex_A Elongation factor G; GT 99.6 1.3E-15 4.6E-20 143.2 10.1 131 90-234 8-157 (693)
166 3cb4_D GTP-binding protein LEP 99.6 2.7E-15 9.2E-20 138.5 11.5 130 91-234 3-153 (599)
167 1m7b_A RND3/RHOE small GTP-bin 99.6 9.1E-16 3.1E-20 120.8 6.9 111 91-217 6-125 (184)
168 2h5e_A Peptide chain release f 99.6 3.3E-15 1.1E-19 136.4 11.3 129 92-234 13-164 (529)
169 3ec1_A YQEH GTPase; atnos1, at 99.6 3.8E-17 1.3E-21 143.1 -2.1 139 92-234 162-305 (369)
170 3th5_A RAS-related C3 botulinu 99.4 8.5E-17 2.9E-21 128.8 0.0 114 90-219 28-150 (204)
171 3sop_A Neuronal-specific septi 99.6 9.1E-15 3.1E-19 122.7 12.3 147 93-241 3-178 (270)
172 2rdo_7 EF-G, elongation factor 99.6 1.7E-14 5.9E-19 135.8 15.5 133 90-236 8-166 (704)
173 1gwn_A RHO-related GTP-binding 99.6 2E-15 6.8E-20 121.5 7.7 111 91-217 27-146 (205)
174 3o47_A ADP-ribosylation factor 99.6 9.1E-16 3.1E-20 132.4 6.1 111 92-220 165-283 (329)
175 2ywe_A GTP-binding protein LEP 99.6 2.5E-15 8.6E-20 138.6 8.7 128 91-232 5-153 (600)
176 4dkx_A RAS-related protein RAB 99.6 3.6E-15 1.2E-19 121.2 8.3 115 91-218 12-133 (216)
177 1dar_A EF-G, elongation factor 99.6 6.4E-15 2.2E-19 138.5 11.2 130 91-234 11-159 (691)
178 3l0i_B RAS-related protein RAB 99.6 1E-16 3.6E-21 127.9 -1.2 113 91-218 32-153 (199)
179 1jal_A YCHF protein; nucleotid 99.6 1.6E-15 5.5E-20 131.9 6.1 87 92-186 2-108 (363)
180 2qag_C Septin-7; cell cycle, c 99.6 1.4E-14 4.8E-19 128.4 12.1 150 91-242 30-206 (418)
181 2g3y_A GTP-binding protein GEM 99.6 4.6E-15 1.6E-19 120.1 6.9 114 91-217 36-159 (211)
182 2wkq_A NPH1-1, RAS-related C3 99.6 6.1E-15 2.1E-19 126.3 8.0 113 91-219 154-275 (332)
183 3lvq_E ARF-GAP with SH3 domain 99.5 1.3E-14 4.4E-19 131.7 9.4 112 92-218 322-438 (497)
184 2www_A Methylmalonic aciduria 99.5 5.2E-15 1.8E-19 128.6 6.5 123 90-232 72-241 (349)
185 3vqt_A RF-3, peptide chain rel 99.5 1.8E-14 6.2E-19 132.0 9.9 134 93-240 32-188 (548)
186 3dpu_A RAB family protein; roc 99.5 1.6E-14 5.6E-19 132.2 9.3 137 90-243 39-188 (535)
187 1udx_A The GTP-binding protein 99.5 4E-14 1.4E-18 125.5 10.9 138 92-243 157-305 (416)
188 2dby_A GTP-binding protein; GD 99.5 1.2E-14 4.1E-19 126.9 7.1 85 93-186 2-111 (368)
189 2cjw_A GTP-binding protein GEM 99.5 1E-14 3.6E-19 115.9 5.5 113 92-217 6-128 (192)
190 1n0u_A EF-2, elongation factor 99.5 5.5E-14 1.9E-18 134.8 10.8 128 92-233 19-190 (842)
191 2dy1_A Elongation factor G; tr 99.5 2.1E-13 7.1E-18 127.8 12.9 128 91-233 8-154 (665)
192 3r7w_B Gtpase2, GTP-binding pr 99.5 2.9E-13 9.8E-18 115.9 11.8 116 94-220 1-123 (331)
193 2qnr_A Septin-2, protein NEDD5 99.5 6.3E-13 2.2E-17 113.2 13.8 151 91-243 17-195 (301)
194 2f9l_A RAB11B, member RAS onco 99.5 1.9E-13 6.6E-18 108.9 9.4 113 92-217 5-124 (199)
195 3p32_A Probable GTPase RV1496/ 99.4 1.1E-13 3.7E-18 120.5 6.9 123 91-233 78-247 (355)
196 4fn5_A EF-G 1, elongation fact 99.4 3.2E-13 1.1E-17 127.5 9.4 133 91-237 12-170 (709)
197 3j25_A Tetracycline resistance 99.4 9.4E-14 3.2E-18 129.6 5.7 129 92-234 2-149 (638)
198 2p67_A LAO/AO transport system 99.4 3.1E-13 1.1E-17 117.0 8.3 125 90-234 54-225 (341)
199 1oix_A RAS-related protein RAB 99.4 7.1E-13 2.4E-17 105.1 8.4 113 92-217 29-148 (191)
200 3c5h_A Glucocorticoid receptor 99.4 3.2E-12 1.1E-16 106.2 11.7 48 174-221 162-216 (255)
201 1puj_A YLQF, conserved hypothe 99.3 1.8E-12 6E-17 109.4 6.0 61 91-152 119-179 (282)
202 2ohf_A Protein OLA1, GTP-bindi 99.3 1.6E-12 5.5E-17 114.1 4.7 88 91-186 21-128 (396)
203 1yrb_A ATP(GTP)binding protein 99.2 1.3E-11 4.4E-16 102.3 7.7 121 91-220 13-188 (262)
204 2wsm_A Hydrogenase expression/ 99.2 7E-12 2.4E-16 101.2 4.0 107 91-217 29-168 (221)
205 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 9.8E-12 3.4E-16 109.2 4.6 88 91-186 19-127 (392)
206 2qm8_A GTPase/ATPase; G protei 99.2 6.3E-11 2.1E-15 102.4 7.9 24 91-114 54-77 (337)
207 2j37_W Signal recognition part 99.1 3.6E-10 1.2E-14 102.3 12.8 117 91-218 100-255 (504)
208 3cnl_A YLQF, putative uncharac 99.1 2.1E-11 7.4E-16 101.7 3.7 59 93-152 100-158 (262)
209 1tq4_A IIGP1, interferon-induc 99.1 1.4E-09 4.8E-14 96.1 13.3 115 92-216 69-188 (413)
210 1f5n_A Interferon-induced guan 99.1 1.9E-10 6.7E-15 105.7 7.5 97 91-199 37-145 (592)
211 3szr_A Interferon-induced GTP- 99.0 3.6E-09 1.2E-13 98.1 12.9 80 138-219 147-230 (608)
212 3dm5_A SRP54, signal recogniti 98.8 1.6E-07 5.6E-12 83.4 16.2 120 92-220 100-256 (443)
213 2v3c_C SRP54, signal recogniti 98.8 6.8E-08 2.3E-12 85.9 12.4 117 92-218 99-253 (432)
214 2hf9_A Probable hydrogenase ni 98.7 2.9E-08 9.8E-13 80.1 8.0 25 91-115 37-61 (226)
215 3kl4_A SRP54, signal recogniti 98.6 3E-07 1E-11 81.7 12.0 121 91-219 96-254 (433)
216 3q5d_A Atlastin-1; G protein, 98.3 1E-06 3.5E-11 78.5 7.7 25 91-115 66-90 (447)
217 1t9h_A YLOQ, probable GTPase E 98.3 1.9E-07 6.5E-12 79.3 2.6 58 91-150 172-236 (307)
218 2yhs_A FTSY, cell division pro 98.3 2.3E-06 7.9E-11 76.9 9.5 123 90-216 291-451 (503)
219 1j8m_F SRP54, signal recogniti 98.3 5.8E-06 2E-10 69.9 11.5 119 92-218 98-254 (297)
220 4fid_A G protein alpha subunit 98.2 2.4E-06 8.3E-11 73.4 8.1 68 137-217 160-242 (340)
221 3e70_C DPA, signal recognition 98.2 2.9E-06 1E-10 72.7 8.4 118 91-217 128-282 (328)
222 3ohm_A Guanine nucleotide-bind 98.2 4.6E-06 1.6E-10 71.4 9.1 68 137-217 166-248 (327)
223 2xxa_A Signal recognition part 98.2 1E-05 3.4E-10 71.9 10.6 72 137-218 183-255 (433)
224 2rcn_A Probable GTPase ENGC; Y 98.2 9E-07 3.1E-11 76.7 3.5 59 92-150 215-280 (358)
225 2yv5_A YJEQ protein; hydrolase 98.1 3.5E-06 1.2E-10 71.4 6.8 56 92-149 165-227 (302)
226 1rj9_A FTSY, signal recognitio 98.1 4.5E-06 1.5E-10 70.8 6.8 25 91-115 101-125 (304)
227 1cip_A Protein (guanine nucleo 98.1 1E-06 3.4E-11 76.4 2.6 67 137-216 192-273 (353)
228 1vma_A Cell division protein F 98.1 9.4E-06 3.2E-10 68.9 7.7 25 91-115 103-127 (306)
229 1u0l_A Probable GTPase ENGC; p 98.0 3E-06 1E-10 71.8 4.4 58 92-150 169-233 (301)
230 3ney_A 55 kDa erythrocyte memb 98.0 5.2E-07 1.8E-11 71.8 -0.8 63 85-147 12-75 (197)
231 1zu4_A FTSY; GTPase, signal re 98.0 7E-05 2.4E-09 63.9 11.9 25 90-114 103-127 (320)
232 1puj_A YLQF, conserved hypothe 97.9 4.1E-05 1.4E-09 64.1 8.6 53 167-221 16-68 (282)
233 2px0_A Flagellar biosynthesis 97.8 5.4E-05 1.8E-09 63.9 8.4 25 91-115 104-128 (296)
234 2ffh_A Protein (FFH); SRP54, s 97.8 0.00016 5.5E-09 64.0 10.7 23 92-114 98-120 (425)
235 2yv5_A YJEQ protein; hydrolase 97.7 0.0001 3.6E-09 62.2 8.3 71 172-243 77-149 (302)
236 2og2_A Putative signal recogni 97.7 0.0005 1.7E-08 59.5 12.4 25 91-115 156-180 (359)
237 4ido_A Atlastin-1; GTPase, GTP 97.6 0.00056 1.9E-08 60.8 11.5 62 91-152 66-154 (457)
238 1kgd_A CASK, peripheral plasma 97.6 3.8E-05 1.3E-09 59.7 3.3 24 92-115 5-28 (180)
239 1u0l_A Probable GTPase ENGC; p 97.5 0.00026 9E-09 59.7 8.1 49 173-221 83-133 (301)
240 1ls1_A Signal recognition part 97.5 0.0011 3.7E-08 55.8 11.6 25 91-115 97-121 (295)
241 1t9h_A YLOQ, probable GTPase E 97.4 0.00034 1.2E-08 59.2 7.7 68 172-240 84-154 (307)
242 1lvg_A Guanylate kinase, GMP k 97.4 7.2E-05 2.5E-09 59.1 2.7 24 92-115 4-27 (198)
243 1ye8_A Protein THEP1, hypothet 97.4 9.2E-05 3.2E-09 57.7 3.1 23 94-116 2-24 (178)
244 3cnl_A YLQF, putative uncharac 97.3 8.1E-05 2.8E-09 61.7 2.6 50 173-226 20-69 (262)
245 1znw_A Guanylate kinase, GMP k 97.3 0.00014 4.8E-09 57.7 3.4 26 91-116 19-44 (207)
246 3tr0_A Guanylate kinase, GMP k 97.3 0.00015 5.1E-09 57.0 3.5 24 92-115 7-30 (205)
247 1ex7_A Guanylate kinase; subst 97.3 0.0001 3.5E-09 57.9 2.5 37 95-131 4-40 (186)
248 3tau_A Guanylate kinase, GMP k 97.3 0.00016 5.6E-09 57.4 3.5 26 91-116 7-32 (208)
249 3a00_A Guanylate kinase, GMP k 97.3 0.00011 3.7E-09 57.4 2.3 22 94-115 3-24 (186)
250 4dzz_A Plasmid partitioning pr 97.3 0.0015 5.2E-08 51.1 9.1 64 137-216 75-143 (206)
251 1s96_A Guanylate kinase, GMP k 97.2 0.00017 5.8E-09 58.1 3.4 26 91-116 15-40 (219)
252 1z6g_A Guanylate kinase; struc 97.2 0.00016 5.4E-09 58.1 3.0 26 91-116 22-47 (218)
253 3c8u_A Fructokinase; YP_612366 97.2 0.00016 5.6E-09 57.4 3.1 25 91-115 21-45 (208)
254 3tif_A Uncharacterized ABC tra 97.2 0.0002 6.9E-09 58.2 3.5 26 91-116 30-55 (235)
255 1zp6_A Hypothetical protein AT 97.2 0.0002 6.9E-09 55.7 3.2 25 91-115 8-32 (191)
256 3ec1_A YQEH GTPase; atnos1, at 97.1 0.0004 1.4E-08 60.3 5.1 71 162-237 62-133 (369)
257 2pcj_A ABC transporter, lipopr 97.1 0.00023 7.7E-09 57.5 2.9 26 91-116 29-54 (224)
258 1htw_A HI0065; nucleotide-bind 97.1 0.00028 9.6E-09 53.8 3.1 25 91-115 32-56 (158)
259 2cbz_A Multidrug resistance-as 97.1 0.0003 1E-08 57.3 3.5 26 91-116 30-55 (237)
260 3cwq_A Para family chromosome 97.1 0.0022 7.6E-08 50.9 8.5 66 137-217 67-134 (209)
261 1b0u_A Histidine permease; ABC 97.1 0.00032 1.1E-08 58.0 3.5 26 91-116 31-56 (262)
262 3h2y_A GTPase family protein; 97.1 0.00056 1.9E-08 59.4 5.1 52 161-219 59-112 (368)
263 1zcb_A G alpha I/13; GTP-bindi 97.1 0.0002 6.9E-09 62.1 2.3 67 137-216 200-281 (362)
264 2onk_A Molybdate/tungstate ABC 97.0 0.0003 1E-08 57.4 3.1 23 93-115 25-47 (240)
265 3asz_A Uridine kinase; cytidin 97.0 0.00031 1E-08 55.6 3.0 25 91-115 5-29 (211)
266 1mv5_A LMRA, multidrug resista 97.0 0.00033 1.1E-08 57.2 3.2 25 91-115 27-51 (243)
267 2olj_A Amino acid ABC transpor 97.0 0.00038 1.3E-08 57.7 3.5 26 91-116 49-74 (263)
268 1g6h_A High-affinity branched- 97.0 0.00031 1.1E-08 57.9 3.0 26 91-116 32-57 (257)
269 2j41_A Guanylate kinase; GMP, 97.0 0.0004 1.4E-08 54.5 3.5 25 91-115 5-29 (207)
270 3gfo_A Cobalt import ATP-bindi 97.0 0.00032 1.1E-08 58.5 3.0 25 91-115 33-57 (275)
271 2ghi_A Transport protein; mult 97.0 0.00039 1.4E-08 57.4 3.5 26 91-116 45-70 (260)
272 1vpl_A ABC transporter, ATP-bi 97.0 0.0004 1.4E-08 57.3 3.5 26 91-116 40-65 (256)
273 2pze_A Cystic fibrosis transme 97.0 0.00034 1.1E-08 56.7 3.0 26 91-116 33-58 (229)
274 4g1u_C Hemin import ATP-bindin 97.0 0.00033 1.1E-08 58.1 3.0 25 91-115 36-60 (266)
275 2ff7_A Alpha-hemolysin translo 97.0 0.00034 1.2E-08 57.4 3.0 26 91-116 34-59 (247)
276 1sgw_A Putative ABC transporte 97.0 0.00031 1E-08 56.4 2.6 25 92-116 35-59 (214)
277 1azs_C GS-alpha; complex (lyas 97.0 0.00029 9.8E-09 61.9 2.6 68 137-217 216-298 (402)
278 3b85_A Phosphate starvation-in 97.0 0.00032 1.1E-08 56.0 2.7 24 92-115 22-45 (208)
279 2xtz_A Guanine nucleotide-bind 97.0 0.00026 9E-09 61.1 2.3 67 137-216 182-263 (354)
280 2ixe_A Antigen peptide transpo 97.0 0.00043 1.5E-08 57.6 3.5 26 91-116 44-69 (271)
281 4gp7_A Metallophosphoesterase; 97.0 0.00031 1.1E-08 54.0 2.5 23 92-114 9-31 (171)
282 2v9p_A Replication protein E1; 97.0 0.00042 1.4E-08 58.6 3.4 25 91-115 125-149 (305)
283 2zu0_C Probable ATP-dependent 97.0 0.00044 1.5E-08 57.3 3.6 25 91-115 45-69 (267)
284 1ji0_A ABC transporter; ATP bi 97.0 0.00037 1.3E-08 56.8 3.0 26 91-116 31-56 (240)
285 2eyu_A Twitching motility prot 97.0 0.00039 1.3E-08 57.5 3.1 24 92-115 25-48 (261)
286 4eun_A Thermoresistant glucoki 97.0 0.00044 1.5E-08 54.4 3.4 25 91-115 28-52 (200)
287 2qi9_C Vitamin B12 import ATP- 96.9 0.0004 1.4E-08 57.0 3.0 26 91-116 25-50 (249)
288 2d2e_A SUFC protein; ABC-ATPas 96.9 0.00042 1.4E-08 56.9 3.1 25 91-115 28-52 (250)
289 2yz2_A Putative ABC transporte 96.9 0.00049 1.7E-08 57.0 3.5 26 91-116 32-57 (266)
290 1kag_A SKI, shikimate kinase I 96.9 0.00046 1.6E-08 52.7 3.0 23 93-115 5-27 (173)
291 1knq_A Gluconate kinase; ALFA/ 96.9 0.00057 1.9E-08 52.4 3.4 25 91-115 7-31 (175)
292 2ihy_A ABC transporter, ATP-bi 96.9 0.00045 1.5E-08 57.7 3.0 26 91-116 46-71 (279)
293 3nh6_A ATP-binding cassette SU 96.9 0.0004 1.4E-08 58.8 2.6 26 91-116 79-104 (306)
294 1np6_A Molybdopterin-guanine d 96.9 0.00058 2E-08 52.9 3.4 24 92-115 6-29 (174)
295 2nq2_C Hypothetical ABC transp 96.9 0.00048 1.6E-08 56.7 2.9 26 91-116 30-55 (253)
296 3lnc_A Guanylate kinase, GMP k 96.9 0.00043 1.5E-08 55.7 2.5 25 91-115 26-51 (231)
297 2qor_A Guanylate kinase; phosp 96.8 0.00059 2E-08 53.9 3.0 25 91-115 11-35 (204)
298 2bdt_A BH3686; alpha-beta prot 96.8 0.00059 2E-08 53.0 3.0 22 94-115 4-25 (189)
299 3aez_A Pantothenate kinase; tr 96.8 0.00062 2.1E-08 57.8 3.2 26 90-115 88-113 (312)
300 2bbs_A Cystic fibrosis transme 96.8 0.00069 2.3E-08 56.9 3.5 26 91-116 63-88 (290)
301 3uie_A Adenylyl-sulfate kinase 96.8 0.00066 2.3E-08 53.4 3.2 25 91-115 24-48 (200)
302 2i3b_A HCR-ntpase, human cance 96.8 0.0006 2E-08 53.6 2.9 22 94-115 3-24 (189)
303 2f1r_A Molybdopterin-guanine d 96.8 0.00037 1.3E-08 53.9 1.5 23 93-115 3-25 (171)
304 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.0053 1.8E-07 50.4 8.5 24 92-115 4-27 (260)
305 2pjz_A Hypothetical protein ST 96.8 0.0008 2.7E-08 55.7 3.4 24 92-115 30-53 (263)
306 2p5t_B PEZT; postsegregational 96.7 0.0086 2.9E-07 48.8 9.6 25 91-115 31-55 (253)
307 3tui_C Methionine import ATP-b 96.7 0.00084 2.9E-08 58.1 3.6 26 91-116 53-78 (366)
308 2bbw_A Adenylate kinase 4, AK4 96.7 0.00087 3E-08 54.5 3.4 22 92-113 27-48 (246)
309 3fvq_A Fe(3+) IONS import ATP- 96.7 0.00086 2.9E-08 58.0 3.5 26 91-116 29-54 (359)
310 2jeo_A Uridine-cytidine kinase 96.7 0.00085 2.9E-08 54.6 3.2 25 91-115 24-48 (245)
311 3b9q_A Chloroplast SRP recepto 96.7 0.0017 5.9E-08 54.7 5.1 25 91-115 99-123 (302)
312 1sxj_A Activator 1 95 kDa subu 96.7 0.0086 2.9E-07 54.2 9.9 24 92-115 77-100 (516)
313 2gza_A Type IV secretion syste 96.7 0.00081 2.8E-08 58.2 3.0 25 92-116 175-199 (361)
314 2yyz_A Sugar ABC transporter, 96.7 0.001 3.5E-08 57.5 3.6 26 91-116 28-53 (359)
315 4b4t_L 26S protease subunit RP 96.7 0.0096 3.3E-07 52.7 9.9 24 93-116 216-239 (437)
316 4a74_A DNA repair and recombin 96.7 0.00089 3E-08 53.3 2.9 24 92-115 25-48 (231)
317 2it1_A 362AA long hypothetical 96.7 0.0011 3.6E-08 57.5 3.6 26 91-116 28-53 (362)
318 3ec2_A DNA replication protein 96.7 0.00092 3.1E-08 51.5 2.9 24 92-115 38-61 (180)
319 3jvv_A Twitching mobility prot 96.7 0.00086 2.9E-08 57.9 3.0 22 94-115 125-146 (356)
320 1cke_A CK, MSSA, protein (cyti 96.6 0.001 3.4E-08 53.1 3.2 23 93-115 6-28 (227)
321 3rlf_A Maltose/maltodextrin im 96.6 0.0011 3.7E-08 57.8 3.6 26 91-116 28-53 (381)
322 2kjq_A DNAA-related protein; s 96.6 0.001 3.4E-08 50.1 2.9 24 92-115 36-59 (149)
323 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.00093 3.2E-08 57.1 3.0 24 93-116 172-195 (330)
324 1nij_A Hypothetical protein YJ 96.6 0.00074 2.5E-08 57.3 2.4 24 92-115 4-27 (318)
325 1z47_A CYSA, putative ABC-tran 96.6 0.00096 3.3E-08 57.6 3.1 26 91-116 40-65 (355)
326 3te6_A Regulatory protein SIR3 96.6 0.025 8.7E-07 47.9 11.8 25 91-115 44-68 (318)
327 1v43_A Sugar-binding transport 96.6 0.0012 4.1E-08 57.4 3.6 26 91-116 36-61 (372)
328 3vaa_A Shikimate kinase, SK; s 96.6 0.0013 4.4E-08 51.7 3.4 25 91-115 24-48 (199)
329 3lw7_A Adenylate kinase relate 96.6 0.0012 4E-08 50.0 3.0 20 93-112 2-21 (179)
330 4b4t_K 26S protease regulatory 96.6 0.025 8.4E-07 50.0 11.9 23 93-115 207-229 (428)
331 1d2n_A N-ethylmaleimide-sensit 96.6 0.025 8.4E-07 46.3 11.3 24 92-115 64-87 (272)
332 3kb2_A SPBC2 prophage-derived 96.6 0.0012 4.2E-08 50.0 3.0 23 93-115 2-24 (173)
333 3d31_A Sulfate/molybdate ABC t 96.6 0.00099 3.4E-08 57.4 2.7 26 91-116 25-50 (348)
334 2ehv_A Hypothetical protein PH 96.6 0.0012 4E-08 53.3 3.0 24 91-114 29-52 (251)
335 3zvl_A Bifunctional polynucleo 96.6 0.011 3.9E-07 51.9 9.6 24 92-115 258-281 (416)
336 1g29_1 MALK, maltose transport 96.6 0.0011 3.9E-08 57.5 3.1 26 91-116 28-53 (372)
337 3l82_B F-box only protein 4; T 96.5 0.0033 1.1E-07 50.2 5.4 73 139-218 97-178 (227)
338 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0011 3.9E-08 59.2 3.0 25 91-115 137-161 (460)
339 4e22_A Cytidylate kinase; P-lo 96.5 0.0015 5.1E-08 53.5 3.5 23 91-113 26-48 (252)
340 2ewv_A Twitching motility prot 96.5 0.0012 4E-08 57.4 3.0 24 92-115 136-159 (372)
341 1lw7_A Transcriptional regulat 96.5 0.001 3.5E-08 57.5 2.7 25 92-116 170-194 (365)
342 2if2_A Dephospho-COA kinase; a 96.5 0.0013 4.5E-08 51.6 3.0 22 93-114 2-23 (204)
343 1sq5_A Pantothenate kinase; P- 96.5 0.0013 4.5E-08 55.5 3.2 25 91-115 79-103 (308)
344 2qt1_A Nicotinamide riboside k 96.5 0.0015 5E-08 51.5 3.3 25 91-115 20-44 (207)
345 2rcn_A Probable GTPase ENGC; Y 96.5 0.0099 3.4E-07 51.3 8.7 67 173-242 129-198 (358)
346 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.051 1.7E-06 43.9 12.6 24 92-115 39-62 (262)
347 2vp4_A Deoxynucleoside kinase; 96.5 0.0015 5.2E-08 52.6 3.3 26 90-115 18-43 (230)
348 3gd7_A Fusion complex of cysti 96.5 0.0015 5.2E-08 57.0 3.5 25 91-115 46-70 (390)
349 3t61_A Gluconokinase; PSI-biol 96.5 0.0016 5.4E-08 51.1 3.3 24 92-115 18-41 (202)
350 2oap_1 GSPE-2, type II secreti 96.5 0.0013 4.5E-08 59.5 3.2 23 93-115 261-283 (511)
351 1oxx_K GLCV, glucose, ABC tran 96.5 0.00093 3.2E-08 57.6 2.0 26 91-116 30-55 (353)
352 1rz3_A Hypothetical protein rb 96.5 0.0015 5.1E-08 51.4 3.0 25 91-115 21-45 (201)
353 1y63_A LMAJ004144AAA protein; 96.5 0.002 6.9E-08 49.9 3.7 25 91-115 9-33 (184)
354 1gvn_B Zeta; postsegregational 96.4 0.0047 1.6E-07 51.6 6.0 25 91-115 32-56 (287)
355 1jjv_A Dephospho-COA kinase; P 96.4 0.0015 5.2E-08 51.3 2.9 23 93-115 3-25 (206)
356 1bif_A 6-phosphofructo-2-kinas 96.4 0.00096 3.3E-08 59.7 1.8 25 91-115 38-62 (469)
357 4b4t_J 26S protease regulatory 96.4 0.014 4.6E-07 51.2 9.1 24 93-116 183-206 (405)
358 2x8a_A Nuclear valosin-contain 96.4 0.0034 1.2E-07 52.1 5.1 21 95-115 47-67 (274)
359 1p9r_A General secretion pathw 96.4 0.0016 5.5E-08 57.4 3.1 24 92-115 167-190 (418)
360 1qhx_A CPT, protein (chloramph 96.4 0.0021 7.2E-08 49.1 3.4 23 93-115 4-26 (178)
361 1xjc_A MOBB protein homolog; s 96.4 0.002 6.9E-08 49.6 3.2 24 92-115 4-27 (169)
362 2jaq_A Deoxyguanosine kinase; 96.4 0.0019 6.4E-08 50.4 3.1 22 94-115 2-23 (205)
363 3end_A Light-independent proto 96.3 0.0039 1.3E-07 52.3 5.1 65 137-215 156-225 (307)
364 3tqc_A Pantothenate kinase; bi 96.3 0.0021 7.3E-08 54.6 3.4 25 91-115 91-115 (321)
365 2rhm_A Putative kinase; P-loop 96.3 0.0022 7.6E-08 49.6 3.1 24 92-115 5-28 (193)
366 2chg_A Replication factor C sm 96.3 0.048 1.6E-06 42.3 11.0 22 94-115 40-61 (226)
367 1kht_A Adenylate kinase; phosp 96.3 0.0023 7.9E-08 49.3 3.2 23 93-115 4-26 (192)
368 1odf_A YGR205W, hypothetical 3 96.3 0.0024 8.1E-08 53.6 3.4 25 91-115 30-54 (290)
369 1ly1_A Polynucleotide kinase; 96.3 0.0021 7.3E-08 49.0 2.9 21 94-114 4-24 (181)
370 2yvu_A Probable adenylyl-sulfa 96.3 0.0028 9.6E-08 49.0 3.6 25 91-115 12-36 (186)
371 4b4t_I 26S protease regulatory 96.3 0.035 1.2E-06 48.9 10.8 24 93-116 217-240 (437)
372 3t15_A Ribulose bisphosphate c 96.3 0.01 3.6E-07 49.5 7.3 23 93-115 37-59 (293)
373 3trf_A Shikimate kinase, SK; a 96.2 0.0026 9E-08 48.9 3.2 24 92-115 5-28 (185)
374 1nks_A Adenylate kinase; therm 96.2 0.0022 7.4E-08 49.5 2.7 22 94-115 3-24 (194)
375 2v54_A DTMP kinase, thymidylat 96.2 0.003 1E-07 49.3 3.6 24 92-115 4-27 (204)
376 4b4t_H 26S protease regulatory 96.2 0.042 1.4E-06 48.9 11.3 25 92-116 243-267 (467)
377 3cm0_A Adenylate kinase; ATP-b 96.2 0.0021 7.1E-08 49.5 2.6 24 92-115 4-27 (186)
378 1ixz_A ATP-dependent metallopr 96.2 0.0023 7.7E-08 52.1 2.7 21 95-115 52-72 (254)
379 3kta_A Chromosome segregation 96.2 0.0026 9.1E-08 48.8 2.9 21 94-114 28-48 (182)
380 3b60_A Lipid A export ATP-bind 96.2 0.0027 9.4E-08 58.3 3.4 26 91-116 368-393 (582)
381 1yqt_A RNAse L inhibitor; ATP- 96.2 0.0029 1E-07 57.6 3.6 25 91-115 46-70 (538)
382 2pez_A Bifunctional 3'-phospho 96.2 0.0029 1E-07 48.6 3.1 24 92-115 5-28 (179)
383 3iij_A Coilin-interacting nucl 96.1 0.003 1E-07 48.4 3.1 24 92-115 11-34 (180)
384 2plr_A DTMP kinase, probable t 96.1 0.003 1E-07 49.5 3.1 24 92-115 4-27 (213)
385 3b9p_A CG5977-PA, isoform A; A 96.1 0.015 5E-07 48.2 7.5 24 92-115 54-77 (297)
386 2yl4_A ATP-binding cassette SU 96.1 0.0026 9E-08 58.6 3.1 26 91-116 369-394 (595)
387 3pfi_A Holliday junction ATP-d 96.1 0.025 8.5E-07 47.8 9.0 24 92-115 55-78 (338)
388 2c95_A Adenylate kinase 1; tra 96.1 0.0035 1.2E-07 48.5 3.4 24 92-115 9-32 (196)
389 1nn5_A Similar to deoxythymidy 96.1 0.0036 1.2E-07 49.2 3.5 25 91-115 8-32 (215)
390 3b5x_A Lipid A export ATP-bind 96.1 0.003 1E-07 58.0 3.4 26 91-116 368-393 (582)
391 4b4t_M 26S protease regulatory 96.1 0.016 5.5E-07 51.3 7.8 25 92-116 215-239 (434)
392 2v1u_A Cell division control p 96.1 0.033 1.1E-06 47.5 9.8 25 91-115 43-67 (387)
393 3euj_A Chromosome partition pr 96.1 0.0028 9.7E-08 56.8 2.9 23 93-115 30-52 (483)
394 3ozx_A RNAse L inhibitor; ATP 96.1 0.0031 1E-07 57.5 3.2 25 91-115 24-48 (538)
395 3qf4_B Uncharacterized ABC tra 96.1 0.003 1E-07 58.2 3.2 26 91-116 380-405 (598)
396 2wwf_A Thymidilate kinase, put 96.1 0.0036 1.2E-07 49.2 3.3 24 92-115 10-33 (212)
397 4a82_A Cystic fibrosis transme 96.1 0.0026 9E-08 58.4 2.8 26 91-116 366-391 (578)
398 1aky_A Adenylate kinase; ATP:A 96.0 0.0038 1.3E-07 49.6 3.4 24 92-115 4-27 (220)
399 2cdn_A Adenylate kinase; phosp 96.0 0.0046 1.6E-07 48.4 3.8 25 91-115 19-43 (201)
400 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.0033 1.1E-07 49.8 3.0 24 92-115 23-46 (235)
401 3fb4_A Adenylate kinase; psych 96.0 0.0036 1.2E-07 49.4 3.1 22 94-115 2-23 (216)
402 3nwj_A ATSK2; P loop, shikimat 96.0 0.0035 1.2E-07 51.4 3.0 24 92-115 48-71 (250)
403 3j16_B RLI1P; ribosome recycli 96.0 0.0038 1.3E-07 57.6 3.6 26 91-116 102-127 (608)
404 1gtv_A TMK, thymidylate kinase 96.0 0.0019 6.3E-08 50.9 1.2 22 94-115 2-23 (214)
405 3h4m_A Proteasome-activating n 96.0 0.014 4.7E-07 48.1 6.6 24 92-115 51-74 (285)
406 1ukz_A Uridylate kinase; trans 96.0 0.0052 1.8E-07 48.0 3.8 25 91-115 14-38 (203)
407 1cr0_A DNA primase/helicase; R 96.0 0.0042 1.5E-07 51.7 3.4 25 91-115 34-58 (296)
408 3qf4_A ABC transporter, ATP-bi 95.9 0.0034 1.2E-07 57.7 3.0 26 91-116 368-393 (587)
409 1in4_A RUVB, holliday junction 95.9 0.0039 1.3E-07 53.1 3.2 23 93-115 52-74 (334)
410 1zak_A Adenylate kinase; ATP:A 95.9 0.004 1.4E-07 49.6 3.1 24 92-115 5-28 (222)
411 1iy2_A ATP-dependent metallopr 95.9 0.0034 1.2E-07 51.9 2.7 21 95-115 76-96 (278)
412 2obl_A ESCN; ATPase, hydrolase 95.9 0.0042 1.4E-07 53.4 3.3 26 91-116 70-95 (347)
413 1zd8_A GTP:AMP phosphotransfer 95.9 0.0044 1.5E-07 49.5 3.2 24 92-115 7-30 (227)
414 1via_A Shikimate kinase; struc 95.9 0.0038 1.3E-07 47.7 2.7 23 93-115 5-27 (175)
415 3dl0_A Adenylate kinase; phosp 95.9 0.0043 1.5E-07 49.1 3.1 22 94-115 2-23 (216)
416 3bk7_A ABC transporter ATP-bin 95.9 0.0044 1.5E-07 57.2 3.5 25 91-115 116-140 (607)
417 1uf9_A TT1252 protein; P-loop, 95.9 0.0048 1.6E-07 48.0 3.3 24 92-115 8-31 (203)
418 2bwj_A Adenylate kinase 5; pho 95.9 0.0048 1.6E-07 47.9 3.1 23 93-115 13-35 (199)
419 1jbk_A CLPB protein; beta barr 95.9 0.0054 1.8E-07 46.7 3.4 24 92-115 43-66 (195)
420 1m7g_A Adenylylsulfate kinase; 95.8 0.0048 1.7E-07 48.7 3.1 25 91-115 24-48 (211)
421 1tev_A UMP-CMP kinase; ploop, 95.8 0.0045 1.6E-07 47.7 2.9 23 93-115 4-26 (196)
422 2cvh_A DNA repair and recombin 95.8 0.0058 2E-07 48.2 3.5 24 91-114 19-42 (220)
423 2iyv_A Shikimate kinase, SK; t 95.8 0.0044 1.5E-07 47.6 2.8 23 93-115 3-25 (184)
424 3qf7_A RAD50; ABC-ATPase, ATPa 95.8 0.0041 1.4E-07 53.8 2.8 20 94-113 25-44 (365)
425 1svm_A Large T antigen; AAA+ f 95.8 0.0054 1.9E-07 53.3 3.5 25 91-115 168-192 (377)
426 3be4_A Adenylate kinase; malar 95.8 0.0042 1.4E-07 49.4 2.6 24 92-115 5-28 (217)
427 1vht_A Dephospho-COA kinase; s 95.8 0.0054 1.8E-07 48.6 3.2 22 93-114 5-26 (218)
428 2pt5_A Shikimate kinase, SK; a 95.8 0.0056 1.9E-07 46.2 3.1 22 94-115 2-23 (168)
429 1e4v_A Adenylate kinase; trans 95.7 0.0055 1.9E-07 48.5 3.0 22 94-115 2-23 (214)
430 1lv7_A FTSH; alpha/beta domain 95.7 0.012 4E-07 47.8 5.1 23 93-115 46-68 (257)
431 2pbr_A DTMP kinase, thymidylat 95.7 0.0058 2E-07 47.1 3.1 22 94-115 2-23 (195)
432 1qf9_A UMP/CMP kinase, protein 95.7 0.0068 2.3E-07 46.6 3.5 23 93-115 7-29 (194)
433 1f2t_A RAD50 ABC-ATPase; DNA d 95.7 0.0054 1.9E-07 46.0 2.8 20 94-113 25-44 (149)
434 2z0h_A DTMP kinase, thymidylat 95.7 0.0058 2E-07 47.3 3.1 22 94-115 2-23 (197)
435 4eaq_A DTMP kinase, thymidylat 95.7 0.006 2.1E-07 49.1 3.2 25 91-115 25-49 (229)
436 2dpy_A FLII, flagellum-specifi 95.7 0.0062 2.1E-07 54.0 3.5 26 91-116 156-181 (438)
437 3ozx_A RNAse L inhibitor; ATP 95.7 0.0061 2.1E-07 55.5 3.3 25 91-115 293-317 (538)
438 1e6c_A Shikimate kinase; phosp 95.6 0.0057 1.9E-07 46.4 2.7 23 93-115 3-25 (173)
439 2vli_A Antibiotic resistance p 95.6 0.0051 1.7E-07 47.1 2.4 24 92-115 5-28 (183)
440 4f4c_A Multidrug resistance pr 95.6 0.0047 1.6E-07 62.1 2.8 26 91-116 1104-1129(1321)
441 1n0w_A DNA repair protein RAD5 95.6 0.006 2.1E-07 48.8 3.0 25 91-115 23-47 (243)
442 3sr0_A Adenylate kinase; phosp 95.6 0.0053 1.8E-07 48.7 2.6 23 94-116 2-24 (206)
443 3pvs_A Replication-associated 95.6 0.067 2.3E-06 47.4 9.9 23 93-115 51-73 (447)
444 3tlx_A Adenylate kinase 2; str 95.6 0.0068 2.3E-07 49.2 3.2 24 92-115 29-52 (243)
445 1qvr_A CLPB protein; coiled co 95.6 0.027 9.3E-07 54.0 7.8 24 92-115 191-214 (854)
446 1xwi_A SKD1 protein; VPS4B, AA 95.6 0.079 2.7E-06 44.7 9.9 24 92-115 45-68 (322)
447 3bos_A Putative DNA replicatio 95.6 0.008 2.7E-07 47.7 3.5 24 92-115 52-75 (242)
448 2ze6_A Isopentenyl transferase 95.6 0.0066 2.3E-07 49.6 2.9 22 94-115 3-24 (253)
449 3vfd_A Spastin; ATPase, microt 95.6 0.041 1.4E-06 47.7 8.2 24 92-115 148-171 (389)
450 1yqt_A RNAse L inhibitor; ATP- 95.5 0.0072 2.4E-07 55.0 3.4 26 91-116 311-336 (538)
451 1r6b_X CLPA protein; AAA+, N-t 95.5 0.048 1.6E-06 51.5 9.2 25 91-115 206-230 (758)
452 1qhl_A Protein (cell division 95.5 0.0012 4E-08 53.4 -1.7 22 94-115 29-50 (227)
453 1ak2_A Adenylate kinase isoenz 95.5 0.009 3.1E-07 48.0 3.5 24 92-115 16-39 (233)
454 3r20_A Cytidylate kinase; stru 95.5 0.0084 2.9E-07 48.6 3.2 24 92-115 9-32 (233)
455 3bk7_A ABC transporter ATP-bin 95.5 0.0079 2.7E-07 55.6 3.4 25 92-116 382-406 (607)
456 1uj2_A Uridine-cytidine kinase 95.4 0.008 2.8E-07 48.9 3.1 25 91-115 21-45 (252)
457 2xb4_A Adenylate kinase; ATP-b 95.4 0.0083 2.8E-07 47.9 3.1 22 94-115 2-23 (223)
458 3exa_A TRNA delta(2)-isopenten 95.4 0.012 4.2E-07 49.7 4.2 61 93-153 4-73 (322)
459 3eph_A TRNA isopentenyltransfe 95.4 0.01 3.6E-07 51.9 3.9 60 93-152 3-71 (409)
460 1sxj_E Activator 1 40 kDa subu 95.4 0.0078 2.7E-07 51.2 3.1 24 92-115 36-59 (354)
461 2p65_A Hypothetical protein PF 95.4 0.007 2.4E-07 46.0 2.5 24 92-115 43-66 (187)
462 1q3t_A Cytidylate kinase; nucl 95.4 0.0099 3.4E-07 47.8 3.5 24 91-114 15-38 (236)
463 2qp9_X Vacuolar protein sortin 95.4 0.017 5.7E-07 49.7 5.1 23 93-115 85-107 (355)
464 3j16_B RLI1P; ribosome recycli 95.4 0.0075 2.6E-07 55.7 3.1 24 93-116 379-402 (608)
465 3pxg_A Negative regulator of g 95.4 0.0092 3.2E-07 53.3 3.5 24 92-115 201-224 (468)
466 3umf_A Adenylate kinase; rossm 95.4 0.0084 2.9E-07 48.0 2.8 24 93-116 30-53 (217)
467 3cf2_A TER ATPase, transitiona 95.3 0.11 3.6E-06 49.6 10.7 25 92-116 238-262 (806)
468 4aby_A DNA repair protein RECN 95.3 0.0036 1.2E-07 54.7 0.6 23 91-114 60-82 (415)
469 2w58_A DNAI, primosome compone 95.3 0.01 3.6E-07 46.2 3.2 23 93-115 55-77 (202)
470 4a1f_A DNAB helicase, replicat 95.3 0.2 6.7E-06 42.8 11.4 24 92-115 46-69 (338)
471 2vhj_A Ntpase P4, P4; non- hyd 95.3 0.052 1.8E-06 46.1 7.6 23 93-115 124-146 (331)
472 3l2o_B F-box only protein 4; s 95.3 0.018 6.1E-07 48.2 4.6 73 139-218 182-263 (312)
473 3ake_A Cytidylate kinase; CMP 95.2 0.011 3.6E-07 46.2 3.1 23 93-115 3-25 (208)
474 1zuh_A Shikimate kinase; alpha 95.2 0.011 3.7E-07 44.7 2.9 24 92-115 7-30 (168)
475 3d8b_A Fidgetin-like protein 1 95.2 0.037 1.3E-06 47.4 6.6 24 92-115 117-140 (357)
476 3cr8_A Sulfate adenylyltranfer 95.2 0.0068 2.3E-07 55.3 1.9 25 91-115 368-392 (552)
477 1nlf_A Regulatory protein REPA 95.1 0.011 3.7E-07 48.9 2.9 25 91-115 29-53 (279)
478 4f4c_A Multidrug resistance pr 95.1 0.011 3.7E-07 59.5 3.4 26 91-116 443-468 (1321)
479 1sxj_C Activator 1 40 kDa subu 95.1 0.012 4.1E-07 50.0 3.2 23 93-115 47-69 (340)
480 2f6r_A COA synthase, bifunctio 95.1 0.013 4.6E-07 48.6 3.3 23 92-114 75-97 (281)
481 2grj_A Dephospho-COA kinase; T 95.1 0.011 3.9E-07 46.2 2.7 25 91-115 11-35 (192)
482 4fcw_A Chaperone protein CLPB; 95.0 0.024 8.3E-07 47.1 4.8 23 93-115 48-70 (311)
483 3g5u_A MCG1178, multidrug resi 95.0 0.012 4E-07 59.0 3.2 26 91-116 415-440 (1284)
484 1fnn_A CDC6P, cell division co 95.0 0.013 4.3E-07 50.3 3.1 23 93-115 45-67 (389)
485 2iw3_A Elongation factor 3A; a 95.0 0.0088 3E-07 58.0 2.2 25 91-115 698-722 (986)
486 3foz_A TRNA delta(2)-isopenten 95.0 0.014 4.8E-07 49.3 3.2 25 92-116 10-34 (316)
487 3n70_A Transport activator; si 95.0 0.029 1E-06 41.4 4.6 23 93-115 25-47 (145)
488 2axn_A 6-phosphofructo-2-kinas 94.9 0.091 3.1E-06 47.5 8.7 24 92-115 35-58 (520)
489 3qks_A DNA double-strand break 94.9 0.013 4.6E-07 46.1 2.8 21 93-113 24-44 (203)
490 1hqc_A RUVB; extended AAA-ATPa 94.9 0.1 3.6E-06 43.4 8.5 23 93-115 39-61 (324)
491 1tue_A Replication protein E1; 94.9 0.012 4.2E-07 46.7 2.5 22 94-115 60-81 (212)
492 2qmh_A HPR kinase/phosphorylas 94.9 0.016 5.4E-07 45.8 3.1 24 92-115 34-57 (205)
493 3syl_A Protein CBBX; photosynt 94.9 0.018 6.1E-07 47.9 3.7 25 91-115 66-90 (309)
494 2b8t_A Thymidine kinase; deoxy 94.9 0.021 7.3E-07 45.9 3.9 40 177-216 90-129 (223)
495 1p5z_B DCK, deoxycytidine kina 94.8 0.013 4.4E-07 48.0 2.6 25 91-115 23-47 (263)
496 3cf0_A Transitional endoplasmi 94.8 0.018 6E-07 48.2 3.5 24 92-115 49-72 (301)
497 3a8t_A Adenylate isopentenyltr 94.8 0.018 6.1E-07 49.2 3.5 25 92-116 40-64 (339)
498 2iw3_A Elongation factor 3A; a 94.8 0.015 5.1E-07 56.5 3.3 25 91-115 460-484 (986)
499 3u61_B DNA polymerase accessor 94.8 0.22 7.4E-06 41.6 10.3 94 94-215 50-148 (324)
500 3ux8_A Excinuclease ABC, A sub 94.8 0.011 3.7E-07 55.2 2.3 22 92-113 348-369 (670)
No 1
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=1.1e-24 Score=177.21 Aligned_cols=149 Identities=36% Similarity=0.570 Sum_probs=124.3
Q ss_pred CCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeC----CcEEEEeCCCCCCCccchHHHHHH
Q 026112 86 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG----TKLCLVDLPGYGFAYAKEEVKDAW 161 (243)
Q Consensus 86 ~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~----~~~~liDTpG~~~~~~~~~~~~~~ 161 (243)
..+....++|+++|.+|+|||||+|+|++......++..+|+|++....... ..+.+|||||+.++.........|
T Consensus 23 ~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 102 (223)
T 4dhe_A 23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW 102 (223)
T ss_dssp GSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence 3455567899999999999999999999984356788999999998766554 789999999998765444456677
Q ss_pred HHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 162 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 162 ~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
..+...|+.....+|++++|+|+++++...+..+++.+...+.|+++|+||+|+....+.......+.+.+..
T Consensus 103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~ 175 (223)
T 4dhe_A 103 EQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDA 175 (223)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHh
Confidence 7788888888888999999999998888888889999988899999999999999888777777777776665
No 2
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.92 E-value=6.1e-24 Score=168.62 Aligned_cols=158 Identities=35% Similarity=0.575 Sum_probs=129.2
Q ss_pred CCCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 85 ~~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
...+....++|+++|.+|+|||||+|+|++. .....++.+++|.+......+..+.+|||||+............+..+
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTS-CCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHcC-ccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHH
Confidence 3445567789999999999999999999998 456778889999998888788899999999987654444445566777
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCC-CccccCC
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN-SLVQPVV 243 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~-~~~~pi~ 243 (243)
...++.....+|++++|+|++.+....+..+.+++...+.|+++|+||+|+..+.+.....+.+++.+...+ ..+++++
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTS 174 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECC
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEe
Confidence 778888777789999999998877788888888888889999999999999988777777778888777643 4555654
No 3
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.92 E-value=5e-24 Score=169.58 Aligned_cols=158 Identities=34% Similarity=0.577 Sum_probs=116.2
Q ss_pred CCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 86 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 86 ~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..+....++|+++|.+|+|||||+|+|++......+++.+++|.+...+..+..+.+|||||+.+..........+..+.
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34555778999999999999999999999843466788889999888877788999999999877654444455666777
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhh-CCCccccCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA-NNSLVQPVV 243 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~-~~~~~~pi~ 243 (243)
..++.....+|++++|+|++.+.+..+..+++++...+.|+++|+||+|+....+.....+.+++.+.. .+..+++++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFS 175 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEE
Confidence 777777666799999999988888888778888888889999999999999887777666777776654 234555553
No 4
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=6.9e-25 Score=197.86 Aligned_cols=197 Identities=21% Similarity=0.149 Sum_probs=109.9
Q ss_pred hhccccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhhHHHhhcccCCCCCC
Q 026112 11 AQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAP 90 (243)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (243)
|.-.+++.+.+.+......| |..++...+ .+|+.+||++|+++.............+................. .
T Consensus 157 ~~~~a~~~l~G~ls~~i~~l--r~~L~~~~a-~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~--r 231 (476)
T 3gee_A 157 AYRTAVSQMKGDLSVRLGGL--REQLIRSCA-LIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIV--S 231 (476)
T ss_dssp HHHHHHHHHHTHHHHHHHHH--HTHHHHHHH-TTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHhhCCcHHHHHHHH--HHHHHHHHH-HhheecCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhh--c
Confidence 33346666677777777777 778888777 899999999988776554443332332322222222221111111 1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHH-HHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEE-LVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~-~~~ 166 (243)
.+++|+++|+||+|||||+|+|++. ....+++++|||++.... ..+..+.+|||||+.+.. + .++. .+.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~-~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~--~----~ve~~gi~ 304 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQ-ERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG--E----EIEHEGIR 304 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC-----------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch--h----HHHHHHHH
Confidence 4578999999999999999999998 457789999999997433 236789999999986521 1 1111 123
Q ss_pred HHHhcccCccEEEEEEeCCCCCCh----hhHHHHHHHHhcCCcEEEEeecCCCCChHHH
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKP----RDHELISLMERSQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~----~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~ 221 (243)
........+|++++|+|++.+.+. ....+++.+. +.|+++|+||+|+......
T Consensus 305 ~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~ 361 (476)
T 3gee_A 305 RSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA 361 (476)
T ss_dssp ---CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH
T ss_pred HHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch
Confidence 444555679999999999887665 3444444443 6899999999999876544
No 5
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.87 E-value=1.3e-21 Score=167.59 Aligned_cols=149 Identities=23% Similarity=0.298 Sum_probs=109.4
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---e-CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---L-GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
++...|+++|.+|||||||+|+|++. ....+++.+++|++..... . +..+.+|||||+..........+.+....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~-~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT-KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC-CccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 34558999999999999999999998 6677899999998764332 2 56799999999976432233333333444
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHH-HHHHHhcCCcEEEEeecCCCC-ChHHHHHHHHHHHHHHhhCCCccccCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHEL-ISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~-~~~l~~~~~p~i~v~nK~D~~-~~~~~~~~~~~l~~~l~~~~~~~~pi~ 243 (243)
..++.. +|++++|+|++.+....+..+ ++.+...+.|+++|+||+|+. ...........+.+.+.. ...++|++
T Consensus 87 ~~~l~~---aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~-~~~i~~vS 162 (308)
T 3iev_A 87 KQSLEE---ADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPE-LTEIVPIS 162 (308)
T ss_dssp HHHHHH---CSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTT-CCCEEECB
T ss_pred HHHhhc---CCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccC-CCeEEEEe
Confidence 444443 999999999998877777776 888888899999999999998 555556666666655431 23455553
No 6
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.86 E-value=5.2e-23 Score=185.80 Aligned_cols=186 Identities=23% Similarity=0.265 Sum_probs=117.5
Q ss_pred ccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhhHHHhhcccCCCCCCCCCE
Q 026112 15 AIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPE 94 (243)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (243)
+++...+.+......+ +..++.... .+++.+||+++ ++..... .......+................. ..+++
T Consensus 173 a~~~l~g~l~~~~~~~--r~~l~~~~~-~ie~~idf~ee-i~~~~~~-i~~~~~~l~~eL~~l~~~~~~~~~~--r~~~k 245 (482)
T 1xzp_A 173 SLRNLKGGLRDFVDSL--RRELIEVLA-EIRVELDYPDE-IETNTGE-VVTRLERIKEKLTEELKKADAGILL--NRGLR 245 (482)
T ss_dssp HHHHHTTHHHHHHHHH--HHHHHHHHH-HHHHHHHSTTT-CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HHCEE
T ss_pred HHHhcchhHhHHHHHH--HHHHHHHHH-HhhhcCCCCcc-ccchHHH-HHHHHHHHHHHHHHHHHhhhhhhhc--cCCCE
Confidence 4444444455555555 455555554 78888999987 6642211 1111111211111111111111111 13579
Q ss_pred EEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCC-CCcc---chHHHHHHHHHHHH
Q 026112 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYG-FAYA---KEEVKDAWEELVKE 167 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~-~~~~---~~~~~~~~~~~~~~ 167 (243)
|+++|+||+|||||+|+|++. ....+++++|||+++... ..+..+.+|||||+. +... ...+...+.
T Consensus 246 V~ivG~pnvGKSSLln~L~~~-~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~----- 319 (482)
T 1xzp_A 246 MVIVGKPNVGKSTLLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQ----- 319 (482)
T ss_dssp EEEECCHHHHTCHHHHHHHHH-TBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHH-----
T ss_pred EEEECcCCCcHHHHHHHHHCC-CCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHH-----
Confidence 999999999999999999998 446789999999986432 236789999999997 5321 111222222
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
++. .+|++++|+|++.+.+..+.++++.+ .+.|+++|+||+|+...
T Consensus 320 ~~~---~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 320 EIE---KADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEK 365 (482)
T ss_dssp HHH---HCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCC
T ss_pred Hhh---cccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccc
Confidence 222 29999999999887777676666665 37899999999999753
No 7
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.86 E-value=4.4e-21 Score=163.76 Aligned_cols=122 Identities=22% Similarity=0.247 Sum_probs=94.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
..|+++|.||+|||||+|+|++. ..+.+++.++||++.... ..+..+.+|||||+.+.. ..+.+.+......+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~-~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~--~~l~~~~~~~~~~~- 83 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV-KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM--DALGEFMDQEVYEA- 83 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC--SHHHHHHHHHHHHH-
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-ceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh--hHHHHHHHHHHHHH-
Confidence 47999999999999999999998 567788889999875332 226689999999987642 22333333333333
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhc--CCcEEEEeecCCCCChHH
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~--~~p~i~v~nK~D~~~~~~ 220 (243)
...+|++++|+|+++++...+..+++.+... +.|+++|+||+|+.....
T Consensus 84 --l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~ 134 (301)
T 1wf3_A 84 --LADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE 134 (301)
T ss_dssp --TSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH
T ss_pred --HhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchH
Confidence 3459999999999888877777777888877 899999999999986544
No 8
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.86 E-value=7.4e-23 Score=183.99 Aligned_cols=191 Identities=21% Similarity=0.218 Sum_probs=120.0
Q ss_pred cccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhhHHHhhcccCCCCCCCCC
Q 026112 14 RAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLP 93 (243)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (243)
.+++.+.+.+......| +..+++..+ .+|+.+||++ +++.............+................. ..++
T Consensus 152 ~a~~~l~g~~~~~~~~~--r~~l~~~~a-~iEa~iDf~e-d~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~--r~~~ 225 (462)
T 3geh_A 152 TALAGLQGKLAHPIRQL--RANCLDILA-EIEARIDFEE-DLPPLDDEAIISDIENIAAEISQLLATKDKGELL--RTGL 225 (462)
T ss_dssp HHHHHHHTTTHHHHHHH--HHHHHHHHH-HHHHHTTSSS-SSCCCCTTTHHHHHHHHHHHHHHHTTTHHHHHHH--HHCE
T ss_pred HHHHHhchhHHHHHHHH--HHHHHHHHH-HHHhhccccc-cCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh--cCCC
Confidence 35666667777777777 777777776 7999999988 5554443332222222221111111111111101 1357
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE---EEEeCCcEEEEeCCCCCCCccchHHHHHHHH-HHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE-LVKEYV 169 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~-~~~~~~ 169 (243)
+|+++|+||+|||||+|+|++. ....+++.+|||++.. ....+..+.+|||||+.+.. + .++. .+.+..
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~--~----~ve~~gi~~~~ 298 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQS-DRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS--D----QVEKIGVERSR 298 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH-HBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------------
T ss_pred EEEEEcCCCCCHHHHHHHHhCC-CcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccch--h----HHHHHHHHHHh
Confidence 8999999999999999999998 4467899999998863 33347789999999986531 1 1111 133445
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
.....+|++++|+|++.+....+..+++.+.. .|+++|+||+|+....
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~~~ 346 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVEKQ 346 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSCGG
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCcch
Confidence 55667999999999998888777777776654 7999999999997643
No 9
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.84 E-value=1.1e-20 Score=165.23 Aligned_cols=196 Identities=18% Similarity=0.133 Sum_probs=100.0
Q ss_pred hhccccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhhhh--hhhhHHHhh--cccCC
Q 026112 11 AQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFR--NKLEFFAAA--KVSSS 86 (243)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~ 86 (243)
++.+++|++.+++.+..+|+ +.|..+....+++. ..++++. ..+..+..+..++.. ..+...... ..+..
T Consensus 100 t~~~~~q~~la~l~~~~~rl-~~~~~l~~~~~~i~--~~g~ge~---~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~ 173 (364)
T 2qtf_A 100 SKEAKMQIELARLKYELPII-KETYTKSKIGEQQG--PLGAGTY---GVESTIKFYKRRINKLMKELESIKIFKEKSIES 173 (364)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-HHC--------------------------CHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred ccchhHHHHHHHHhhhchhh-hhhhHHHHhcCCCC--cCCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44457899999999999999 66755444432221 2223332 222234444554432 222222211 12222
Q ss_pred CCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHH
Q 026112 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (243)
Q Consensus 87 ~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (243)
+.+.+.+.|+++|++|||||||+|+|++.. ..+++.+++|++..... .+..+.++||||+......+.++ .+.
T Consensus 174 r~~~~~~~V~lvG~~naGKSTLln~L~~~~--~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve-~f~- 249 (364)
T 2qtf_A 174 NKRNNIPSIGIVGYTNSGKTSLFNSLTGLT--QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVD-AFF- 249 (364)
T ss_dssp -----CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHH-HHH-
T ss_pred hhhcCCcEEEEECCCCCCHHHHHHHHHCCC--ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHH-HHH-
Confidence 333456679999999999999999999984 46778889888764332 25678999999975422222121 122
Q ss_pred HHHHHHhcccCccEEEEEEeCCCCC--Chhh-HHHHHHHHh---cCCcEEEEeecCCCCChH
Q 026112 164 LVKEYVSTRVSLKRVCLLIDTKWGV--KPRD-HELISLMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~--~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
..+.....+|++++|+|++++. .... ..+.+.+.. .+.|+++|+||+|+....
T Consensus 250 ---~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 250 ---VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp ---HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred ---HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 2233345599999999987653 1111 123333433 468999999999998643
No 10
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.83 E-value=1.5e-19 Score=152.23 Aligned_cols=149 Identities=19% Similarity=0.287 Sum_probs=99.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccC-------CCCceEEEEEEEe---C--CcEEEEeCCCCCCCccch-HHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKL---G--TKLCLVDLPGYGFAYAKE-EVK 158 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~-------~~gtT~~~~~~~~---~--~~~~liDTpG~~~~~~~~-~~~ 158 (243)
.++|+++|.+|+|||||+|+|++.. ...... .++++.+...... + ..+.+|||||+++..... ...
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTD-LYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSC-C---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 4799999999999999999999873 222221 2223333322221 2 279999999997653221 111
Q ss_pred HH---HHHHHHHHHhc----------ccCccEEEEEEeC-CCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHH
Q 026112 159 DA---WEELVKEYVST----------RVSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARR 224 (243)
Q Consensus 159 ~~---~~~~~~~~~~~----------~~~~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~ 224 (243)
.. +......|+.. ...+|+++++++. .+++...+..+++.+.. ++|+++|+||+|+..+.+....
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~ 165 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQF 165 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHH
Confidence 11 11222333332 1126788888864 45788888888888887 8999999999999998888888
Q ss_pred HHHHHHHHhhCCCccccC
Q 026112 225 AMQIEESLKANNSLVQPV 242 (243)
Q Consensus 225 ~~~l~~~l~~~~~~~~pi 242 (243)
...+.+.+..++..++++
T Consensus 166 ~~~i~~~l~~~~i~v~~~ 183 (274)
T 3t5d_A 166 KKQIMKEIQEHKIKIYEF 183 (274)
T ss_dssp HHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHcCCeEEcC
Confidence 888888888888777765
No 11
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.82 E-value=9.8e-21 Score=158.09 Aligned_cols=143 Identities=22% Similarity=0.198 Sum_probs=97.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|+++|.+|||||||+|+|++.. ..+++.+|+|.+..... .+..+.+|||||+.............+.+...|+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~--~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN--QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS--EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 689999999999999999999984 67888999998765433 3567999999998653321000011123344444
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi~ 243 (243)
.. ..+|++++|+|++.. .....+..++...+.|+++|+||+|+............+.+.+ +.+++|++
T Consensus 80 ~~-~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l---g~~vi~~S 147 (256)
T 3iby_A 80 ID-LEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLL---GCSVIPIQ 147 (256)
T ss_dssp HH-SCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHH---CSCEEECB
T ss_pred hh-CCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHc---CCCEEEEE
Confidence 22 349999999998862 5556777778888999999999999875443322333444444 34555553
No 12
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.81 E-value=3.7e-19 Score=143.13 Aligned_cols=156 Identities=39% Similarity=0.555 Sum_probs=99.9
Q ss_pred CCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 87 ~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
++...+.+|+++|++|||||||+|+|++......+++.+|+|.....+..+..+.++||||+............|...+.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 34456789999999999999999999997434566778888876655444458999999998642211111233444455
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCC--CccccC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN--SLVQPV 242 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~--~~~~pi 242 (243)
.++.....++.+++++|...+....+..+..++...+.|+++|.||+|+....+.......++..+.... ...+|+
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF 178 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEE
Confidence 5555455689999999998776666666777777788999999999999987655554556666665543 233454
No 13
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.81 E-value=8.8e-20 Score=163.39 Aligned_cols=120 Identities=23% Similarity=0.330 Sum_probs=81.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
|+|+++|.||+|||||+|+|++. +.+.+++.+|+|++..... .+..+.+|||||+.... .+.....+......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKK-KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP-QDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSG-GGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CCceecCCCCCccceeeEEEEECCeEEEEEECCCccccc-cchHHHHHHHHHHHHH
Confidence 68999999999999999999998 5567899999999864432 36689999999986421 1111122223333444
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
. .+|++++|+|+..+++..+..+.+++...++|+++|+||+|+..
T Consensus 80 ~---~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 80 R---EADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLR 124 (439)
T ss_dssp T---TCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHH
T ss_pred H---hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc
Confidence 3 39999999999988888888888888888999999999999853
No 14
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.81 E-value=1.3e-19 Score=162.10 Aligned_cols=121 Identities=20% Similarity=0.331 Sum_probs=79.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.||+|||||+|+|++. +.+.+++.+|+|++...... +..+.+|||||+..... .....+......+
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~--~~~~~~~~~~~~~ 79 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE--PFLAQIRQQAEIA 79 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEE-ECC-----------CEEEECTTCSSCCEEEC-----------CHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcch--hHHHHHHHHHHHH
Confidence 379999999999999999999998 55778999999999876653 67899999999863211 1222333333344
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
+.. +|++++|+|+..+.+..+..+.+.+...++|+++|+||+|+...
T Consensus 80 ~~~---ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 80 MDE---ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HHH---CSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC---
T ss_pred HHh---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccc
Confidence 443 99999999999888888888888888889999999999998753
No 15
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.80 E-value=3.5e-20 Score=156.19 Aligned_cols=122 Identities=20% Similarity=0.165 Sum_probs=87.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|||||||+|+|++.. ..+++.+|+|.+..... .+..+.+|||||+.+...........+.+...|
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~--~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC--EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 3689999999999999999999984 67889999998865433 367899999999865321100000011222333
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
+. ...+|++++|+|++.. .....+...+...++|+++|+||+|+...
T Consensus 81 ~~-~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~ 127 (274)
T 3i8s_A 81 IL-SGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEK 127 (274)
T ss_dssp HH-HTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHHHH
T ss_pred Hh-hcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccchhh
Confidence 32 2349999999998862 45566777777889999999999998644
No 16
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.80 E-value=2.3e-19 Score=161.41 Aligned_cols=122 Identities=20% Similarity=0.348 Sum_probs=82.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|||||||+|+|++. +.+.+.+.+|+|++...... +..+.+|||||+... .+.....+......
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~-~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG--DEPFLAQIRQQAEI 98 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEE-EEC-----------CEEEECTTCSSCCEEECCCC--------CCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCc--chHHHHHHHHHHHh
Confidence 4689999999999999999999998 55778999999999877653 678999999998642 22223333344444
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|+..++...+..+.+++...++|+++|+||+|+...
T Consensus 99 ~~~~---ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 99 AMDE---ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHH---CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----
T ss_pred hHhh---CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhh
Confidence 4444 89999999999889999999999999889999999999998743
No 17
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.80 E-value=1.2e-19 Score=162.49 Aligned_cols=149 Identities=19% Similarity=0.245 Sum_probs=96.4
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE---EEEeCCcEEEEeCCCCCCCccc-hHHHHHHHHH-
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAK-EEVKDAWEEL- 164 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~---~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~- 164 (243)
...++|+++|.+|+|||||+|+|++. ....+++++|||++.. +...+..+.+|||||+...... +.++ .+..+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e-~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTE-KYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTS-TTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCS-HHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCC-CceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHH-HHHHHH
Confidence 35689999999999999999999998 4466899999999863 2334668999999998543211 1111 11111
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH--HHHHHHHHHHHHhhC-CCcccc
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKAN-NSLVQP 241 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~--~~~~~~~l~~~l~~~-~~~~~p 241 (243)
...++. .+|++++|+|++++.+.++..++..+...+.|+++|+||+|+.+... ..+..+.+.+.+... +.++++
T Consensus 251 ~~~~~~---~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 251 ALKAID---RSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHH---HCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHHH---hCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 112222 28999999999998888888888888888999999999999986533 234445555555432 334455
Q ss_pred CC
Q 026112 242 VV 243 (243)
Q Consensus 242 i~ 243 (243)
+|
T Consensus 328 ~S 329 (436)
T 2hjg_A 328 MS 329 (436)
T ss_dssp CC
T ss_pred Ee
Confidence 53
No 18
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.79 E-value=5.8e-19 Score=145.45 Aligned_cols=128 Identities=18% Similarity=0.216 Sum_probs=78.2
Q ss_pred CCCCCEEEEecCCCCchhHHHHHHhcccccccccCCC--CceEEEEEEE---eCCcEEEEeCCCCCCCccc-hHHHHHHH
Q 026112 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP--GLTQTINFFK---LGTKLCLVDLPGYGFAYAK-EEVKDAWE 162 (243)
Q Consensus 89 ~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~--gtT~~~~~~~---~~~~~~liDTpG~~~~~~~-~~~~~~~~ 162 (243)
....++|+++|.+|+|||||+|+|++.. ...+..+ ++|.++.... .+..+.+|||||+.+.... .+.. .
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~--~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~---~ 100 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRK--VFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETS---K 100 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSC--CSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHH---H
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCC--cCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHH---H
Confidence 3456899999999999999999999984 2344444 5666654332 3668999999998764322 2222 2
Q ss_pred HHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHH-----hcCCcEEEEeecCCCCChHHHH
Q 026112 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME-----RSQTKYQVVLTKTDTVFPIDVA 222 (243)
Q Consensus 163 ~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~-----~~~~p~i~v~nK~D~~~~~~~~ 222 (243)
.+...+......+|++++|+|+.. +...+..++..+. ....|+++|+||+|+.....+.
T Consensus 101 ~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 101 EIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp HHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHH
Confidence 233333333455899999999874 4445555555553 2356999999999998765544
No 19
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.79 E-value=1.2e-18 Score=142.51 Aligned_cols=148 Identities=16% Similarity=0.123 Sum_probs=90.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
...++|+++|.+|+|||||+|+|++.. ..+++.+++|+++.... .+..+.+|||||+.+....+.....+. .+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~-~~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRAN--VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMT-TIT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTC--EEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHH-HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHH-HHH
Confidence 457899999999999999999999983 33677888888876544 256799999999865321111000011 122
Q ss_pred HHHhcccCccEEEEEEeCCCCCCh---hhHHHHHHHHhc--CCcEEEEeecCCCCChHHHHHH-HHHHHHHHhhCC--Cc
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKP---RDHELISLMERS--QTKYQVVLTKTDTVFPIDVARR-AMQIEESLKANN--SL 238 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~---~~~~~~~~l~~~--~~p~i~v~nK~D~~~~~~~~~~-~~~l~~~l~~~~--~~ 238 (243)
.+. ..+|++++|+|++...+. ....++..+... +.|+++|+||+|+....+.... ...+.+.....+ ..
T Consensus 104 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (228)
T 2qu8_A 104 ALA---HINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIK 180 (228)
T ss_dssp HHH---TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEE
T ss_pred Hhh---ccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCce
Confidence 222 237999999998875432 234566666654 7999999999999865433221 223334444443 44
Q ss_pred cccCC
Q 026112 239 VQPVV 243 (243)
Q Consensus 239 ~~pi~ 243 (243)
+++++
T Consensus 181 ~~~~S 185 (228)
T 2qu8_A 181 FSSFS 185 (228)
T ss_dssp EEECC
T ss_pred EEEEe
Confidence 55553
No 20
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.79 E-value=8.3e-19 Score=134.65 Aligned_cols=119 Identities=24% Similarity=0.274 Sum_probs=81.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|+++|.+|+|||||+|+|++. ....+...+++|.+..... .+..+.+|||||...... ....+......++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~ 77 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK-RSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK---WEKKIQEKVDRAL 77 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC-CC-----------CCEEEEEEETTEEEEEEECGGGCSSSS---CCHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc---hHHHHHHHHHHHH
Confidence 68999999999999999999998 4455677788887764433 356899999999865321 1111122222333
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
..+|++++|+|++.+....+..+.+++...+.|+++|+||+|+...
T Consensus 78 ---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 78 ---EDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKH 123 (161)
T ss_dssp ---TTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG
T ss_pred ---HhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 3489999999998877777777888888788999999999999865
No 21
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.78 E-value=1.1e-18 Score=136.70 Aligned_cols=119 Identities=26% Similarity=0.263 Sum_probs=82.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE--E-eCCcEEEEeCCCCCCCccchHHHHH-HHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--K-LGTKLCLVDLPGYGFAYAKEEVKDA-WEELVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~--~-~~~~~~liDTpG~~~~~~~~~~~~~-~~~~~~ 166 (243)
.+.+|+++|.+|+|||||+|+|++. ....+++++++|++.... . .+..+.+|||||+..... ..+.. .....
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~~~- 78 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR-EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD--EVERIGIERAW- 78 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS--HHHHHHHHHHH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-CcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchh--HHHHHHHHHHH-
Confidence 3579999999999999999999987 335578888988775322 2 255789999999865321 11110 11111
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhc---CCcEEEEeecCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS---QTKYQVVLTKTDTV 216 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~---~~p~i~v~nK~D~~ 216 (243)
.++ ..+|++++|+|++...+.....++..+... ++|+++|+||+|+.
T Consensus 79 ~~~---~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 79 QEI---EQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp HHH---HTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred HHH---HhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 122 348999999999876555555565555443 58999999999984
No 22
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.78 E-value=8.5e-19 Score=145.52 Aligned_cols=144 Identities=14% Similarity=0.078 Sum_probs=90.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccC-CCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~-~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
..++|+++|.+|+|||||+|+|++.. ....+. ..++|+.+.... .+..+.+|||||+.+...... ......+..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~-~~~~~~i~~ 97 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQR-RFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKT-DPGCEERGH 97 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSC-CC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHH-STTSHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCC-CccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcH-HHHHHHHHH
Confidence 45799999999999999999999983 333322 224666654332 367899999999875422110 111122333
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhc------CCcEEEEeecCCCCChHHHHHHH-----HHHHHHHhhC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS------QTKYQVVLTKTDTVFPIDVARRA-----MQIEESLKAN 235 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~------~~p~i~v~nK~D~~~~~~~~~~~-----~~l~~~l~~~ 235 (243)
.+......+|++++|+|+.. +...+..+++.+... +.|+++|.||+|+.... ....+ ..++..+...
T Consensus 98 ~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~-~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGS-LHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHT
T ss_pred HHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCC-HHHHHhhcccHHHHHHHHHc
Confidence 33333456999999999874 677777777777654 68999999999997532 22222 2355555555
Q ss_pred CCc
Q 026112 236 NSL 238 (243)
Q Consensus 236 ~~~ 238 (243)
+..
T Consensus 176 g~~ 178 (247)
T 3lxw_A 176 GGR 178 (247)
T ss_dssp TTC
T ss_pred CCe
Confidence 543
No 23
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.78 E-value=8.7e-19 Score=149.54 Aligned_cols=126 Identities=25% Similarity=0.265 Sum_probs=91.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE--E-eCCcEEEEeCCCCC-CCccchHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--K-LGTKLCLVDLPGYG-FAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~--~-~~~~~~liDTpG~~-~~~~~~~~~~~~~~~~~~ 167 (243)
...|+++|++|||||||+|+|++. ....+++.+++|++.... . .+..+.++||||+. .. ..... ..+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~-~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~--~~~l~---~~~~~~ 81 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ-KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE--KRAIN---RLMNKA 81 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC-SEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH--HHHHH---HHHTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC-CccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccc--hhhHH---HHHHHH
Confidence 358999999999999999999998 556778888988764332 2 25679999999985 21 00000 111112
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC-hHHHHHH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-PIDVARR 224 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~-~~~~~~~ 224 (243)
.......+|++++|+|+.. +...+..+.+.+...+.|+++|+||+|+.. .......
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~ 138 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPH 138 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHH
T ss_pred HHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHH
Confidence 2334456899999999987 777887788888777899999999999987 4434333
No 24
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.78 E-value=3.4e-18 Score=134.84 Aligned_cols=136 Identities=26% Similarity=0.448 Sum_probs=92.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccc-hHHHHHHHHHHHHHHhc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK-EEVKDAWEELVKEYVST 171 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~~~~~~ 171 (243)
++|+++|.+|+|||||+|+|++.. ...+..+++|.+......+ .+.+|||||+...... ....+.+......|+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED 78 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC--CSSSSSTTCTTSCEEEEET-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC--CccCCCCCccceeEEEecC-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999983 4566777888777665555 7999999997543211 11133444555556655
Q ss_pred -ccCccEEEEEEeCCCC-----------CChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 172 -RVSLKRVCLLIDTKWG-----------VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 172 -~~~~d~v~~vvd~~~~-----------~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
...++++++|+|.... ....+.++...+...+.|+++|+||+|+.... ......+.+.++
T Consensus 79 ~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~ 150 (190)
T 2cxx_A 79 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--QEVINFLAEKFE 150 (190)
T ss_dssp HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--HHHHHHHHHHHT
T ss_pred hhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH--HHHHHHHHHHhh
Confidence 5668899999997531 11122334555566689999999999998754 333344444444
No 25
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.78 E-value=6.9e-19 Score=158.32 Aligned_cols=150 Identities=19% Similarity=0.242 Sum_probs=99.9
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---EEEEeCCcEEEEeCCCCCCCccchHHHHHHHHH-H
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL-V 165 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~-~ 165 (243)
...++|+++|.+|+|||||+|+|++. ....+++++|+|++. .+...+..+.+|||||+..........+.+... .
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTS-TTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCC-CccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 45789999999999999999999988 447789999999985 333346789999999986532111000111111 1
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChH--HHHHHHHHHHHHHhhC-CCccccC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI--DVARRAMQIEESLKAN-NSLVQPV 242 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~--~~~~~~~~l~~~l~~~-~~~~~pi 242 (243)
..++. .+|++++|+|++.++...+..++..+...+.|+++|+||+|+.... ...+..+.+++.+... +.+++++
T Consensus 272 ~~~~~---~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (456)
T 4dcu_A 272 LKAID---RSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 348 (456)
T ss_dssp HHHHH---HCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHh---hCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 11222 3899999999999999999999999988899999999999998543 2344445555554432 2344454
Q ss_pred C
Q 026112 243 V 243 (243)
Q Consensus 243 ~ 243 (243)
|
T Consensus 349 S 349 (456)
T 4dcu_A 349 S 349 (456)
T ss_dssp C
T ss_pred c
Confidence 3
No 26
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.78 E-value=7.6e-19 Score=146.75 Aligned_cols=118 Identities=25% Similarity=0.284 Sum_probs=86.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+|+|++.. ..++..+|+|.+...... +..+.+|||||+........ . +.+...|
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~--~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~---e~v~~~~ 78 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK--QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSI-D---EKIARDY 78 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC--EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSH-H---HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCH-H---HHHHHHH
Confidence 4689999999999999999999974 457888999988654432 56899999999764322110 0 1233334
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
+.. ..+|++++|+|++.. .....+...+...+.|+++|+||+|+...
T Consensus 79 ~~~-~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~ 125 (258)
T 3a1s_A 79 LLK-GDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKK 125 (258)
T ss_dssp HHH-SCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHH
T ss_pred Hhh-cCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCc
Confidence 322 348999999998863 44456667777779999999999998543
No 27
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.77 E-value=7e-19 Score=148.04 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=86.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.++|+++|.+|||||||+|+|++.. ..+++++|+|.+...... +..+.+|||||......... .+.+...|+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~--~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~----~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN--QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSP----EAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC--CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSH----HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCCh----HHHHHHHHH
Confidence 4689999999999999999999973 568889999987655443 56899999999764321110 122334444
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.. ..+|++++|+|++.. .....+...+...+.|+++|+||+|+..
T Consensus 77 ~~-~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 77 LS-QRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLD 121 (272)
T ss_dssp HT-TCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHH
T ss_pred hc-CCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCC
Confidence 43 359999999998753 3344566666677999999999999854
No 28
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.76 E-value=2.6e-18 Score=146.88 Aligned_cols=126 Identities=22% Similarity=0.300 Sum_probs=81.6
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccccc-----ccccCCCC---ceEEE------------------------------
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-----VRTSDKPG---LTQTI------------------------------ 131 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~-----~~vs~~~g---tT~~~------------------------------ 131 (243)
...|+|+++|.+|+|||||+|+|++. .. ..++..|+ ++++.
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~-~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR-DFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS-CCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC-CcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 45789999999999999999999998 33 23344442 22210
Q ss_pred -----------------------E-EEEeCCcEEEEeCCCCCCCcc---chHHHHHHHHHHHHHHhcccCccEEEEEEeC
Q 026112 132 -----------------------N-FFKLGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 184 (243)
Q Consensus 132 -----------------------~-~~~~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~ 184 (243)
. ....+..+.+|||||+..... .......+......++.. +|++++|+|+
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~iilvvd~ 177 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKK---QNAIIVAVTP 177 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHS---TTEEEEEEEE
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcC---CCeEEEEEEe
Confidence 0 111246799999999864211 112233344455555554 8999999996
Q ss_pred -CCCCChhh-HHHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 185 -KWGVKPRD-HELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 185 -~~~~~~~~-~~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
..++...+ ..+++.+...+.|+++|+||+|+....
T Consensus 178 ~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 178 ANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKG 214 (315)
T ss_dssp SSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSS
T ss_pred cCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcc
Confidence 54554444 477888877889999999999998654
No 29
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.76 E-value=9.4e-18 Score=142.25 Aligned_cols=126 Identities=20% Similarity=0.262 Sum_probs=87.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccc-----cccCCCC----------------------ceEE------------
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV-----RTSDKPG----------------------LTQT------------ 130 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~-----~vs~~~g----------------------tT~~------------ 130 (243)
...|+|+++|.+|+|||||+|+|++.. .. .++..|+ +|++
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~-~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRD-FLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSC-CSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCC-cCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999983 22 3444454 3322
Q ss_pred --------------EEEEE-eCCcEEEEeCCCCCCCcc---chHHHHHHHHHHHHHHhcccCccE-EEEEEeCCCCCChh
Q 026112 131 --------------INFFK-LGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKR-VCLLIDTKWGVKPR 191 (243)
Q Consensus 131 --------------~~~~~-~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~-v~~vvd~~~~~~~~ 191 (243)
+.... .+..+.+|||||+..... .+.+...+..+...|+.. ++. +++|+|++.++...
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~il~v~d~~~~~~~~ 179 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK---ENCLILAVSPANSDLANS 179 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTS---TTEEEEEEEESSSCGGGC
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcC---CCeEEEEEecCCcchhhh
Confidence 00011 136899999999875321 233344556666677664 554 45799998776666
Q ss_pred hH-HHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 192 DH-ELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 192 ~~-~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
+. .+++.+...+.|+++|+||+|+....
T Consensus 180 ~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 180 DALKIAKEVDPQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHHHHHHCTTCSSEEEEEECGGGSCTT
T ss_pred HHHHHHHHhCCCCCeEEEEEEccccCCCC
Confidence 53 57777777789999999999998653
No 30
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.75 E-value=1.4e-17 Score=149.09 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=91.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccccc-----------------------------ccccCCCCceEEEEEEE---eC
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTINFFK---LG 137 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~-----------------------------~~vs~~~gtT~~~~~~~---~~ 137 (243)
....+|+++|.+|+|||||+|+|+..... ......+|+|.+..... .+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 45679999999999999999999664210 00112367888875543 36
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCC-------hhhHHHHHHHHhcCCc-EEEE
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-------PRDHELISLMERSQTK-YQVV 209 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~-------~~~~~~~~~l~~~~~p-~i~v 209 (243)
..+.+|||||+.+ +..........+|++++|+|+..+.. .+..+.+..+...++| +++|
T Consensus 95 ~~~~iiDTPGh~~-------------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvv 161 (439)
T 3j2k_7 95 KHFTILDAPGHKS-------------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVL 161 (439)
T ss_pred eEEEEEECCChHH-------------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEE
Confidence 7899999999742 22222233344999999999988754 4666777777888888 9999
Q ss_pred eecCCCCCh----HHHHHHHHHHHHHHhhC
Q 026112 210 LTKTDTVFP----IDVARRAMQIEESLKAN 235 (243)
Q Consensus 210 ~nK~D~~~~----~~~~~~~~~l~~~l~~~ 235 (243)
+||+|+... .......+.+.+.+...
T Consensus 162 iNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~ 191 (439)
T 3j2k_7 162 INKMDDPTVNWSNERYEECKEKLVPFLKKV 191 (439)
T ss_pred eecCCCcccchHHHHHHHHHHHHHHHHHHh
Confidence 999999642 22344444555554443
No 31
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.75 E-value=1.6e-18 Score=145.61 Aligned_cols=139 Identities=22% Similarity=0.236 Sum_probs=92.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|||||||+|+|++.. ..++..+|+|.+..... .+..+.+|||||+......... ......|
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----~~~~~~~ 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR--QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSID----ELIARNF 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC--EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHH----HHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHH----HHHHHHh
Confidence 4689999999999999999999984 47788899988865433 3567999999997653221111 1123333
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcC-CcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~-~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
+. ...+|++++|+|++.. .....+...+...+ .|+++|+||+|+............+.+.+ +.+++|+
T Consensus 77 ~~-~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l---g~~~~~~ 145 (271)
T 3k53_A 77 IL-DGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKEL---GVPVIPT 145 (271)
T ss_dssp HH-TTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHH---SSCEEEC
T ss_pred hh-ccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHc---CCcEEEE
Confidence 32 2459999999998864 34445555566667 99999999999764332222233344443 3445554
No 32
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.75 E-value=8.2e-18 Score=140.15 Aligned_cols=125 Identities=16% Similarity=0.137 Sum_probs=84.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCC-ceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~g-tT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
...++|+|+|.+|||||||+|+|++. .....+..+. +|++.... ..+..+.+|||||+.+..... .+....+.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~--~~~~~~i~ 96 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK-QAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHC--EALYKEVQ 96 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS-CCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCC--HHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCH--HHHHHHHH
Confidence 35679999999999999999999987 3333343343 56655432 236789999999987643221 11112222
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhc-----CCcEEEEee-cCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLT-KTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-----~~p~i~v~n-K~D~~~~ 218 (243)
.........+|++++|+|+.. +...+..+.+.+... ..|.++|+| |+|+...
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 222223345999999999885 666666676777654 578888888 9999853
No 33
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.75 E-value=1.1e-17 Score=140.40 Aligned_cols=124 Identities=21% Similarity=0.200 Sum_probs=86.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++. ....+++.+++|.+.... ..+..+.+|||||+.+...... ..+ ..+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~--~~~-~~i~~ 113 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIND--MAL-NIIKS 113 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECH--HHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchH--HHH-HHHHH
Confidence 3579999999999999999999998 445677788887665433 2366899999999866422111 111 12223
Q ss_pred HHhcccCccEEEEEEeCCC-CCChhhHHHHHHHHhc-C----CcEEEEeecCCCCChH
Q 026112 168 YVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-Q----TKYQVVLTKTDTVFPI 219 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~~-~----~p~i~v~nK~D~~~~~ 219 (243)
++. ...+|++++|+|.+. .+...+..+++.+... + .|+++|+||+|+.++.
T Consensus 114 ~~~-~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 114 FLL-DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HTT-TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred Hhh-cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 322 235899999988654 4556666777777543 2 6999999999998654
No 34
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.75 E-value=1.3e-17 Score=142.53 Aligned_cols=142 Identities=18% Similarity=0.146 Sum_probs=93.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.++|+++|.+|+|||||+|++++. ....++..+++|.+...... +..+.+|||||.... ...........
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~-~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~~~~ 76 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN-YSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-----MENYFTKQKDH 76 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC-CCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-----HHHHHTTTHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC-CCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH-----hhhhhhhHHHH
Confidence 468999999999999999999987 33566777888887765432 457899999996320 01111122333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhH-HHHHHHHhc-----CCcEEEEeecCCCCChHHHH----HHHHHHHHHHhhCC-
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERS-----QTKYQVVLTKTDTVFPIDVA----RRAMQIEESLKANN- 236 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l~~~-----~~p~i~v~nK~D~~~~~~~~----~~~~~l~~~l~~~~- 236 (243)
++. .+|++++|+|++...+..+. .+.+++... +.|+++|+||+|+..+.... .....+++.....+
T Consensus 77 ~~~---~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~ 153 (307)
T 3r7w_A 77 IFQ---MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF 153 (307)
T ss_dssp HHT---TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred Hhc---cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence 333 38999999999876443433 333333322 78999999999999854443 33355556656554
Q ss_pred --CccccC
Q 026112 237 --SLVQPV 242 (243)
Q Consensus 237 --~~~~pi 242 (243)
..++++
T Consensus 154 ~~~~~~~t 161 (307)
T 3r7w_A 154 PNLIGFPT 161 (307)
T ss_dssp CSCEEEEC
T ss_pred CCeEEEEe
Confidence 455554
No 35
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.75 E-value=7.3e-19 Score=137.30 Aligned_cols=114 Identities=22% Similarity=0.293 Sum_probs=82.9
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE---EEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
...++|+++|.+|+|||||+|+|++.. ......+++|.+.. ....+..+.+|||||...... +.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~- 72 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK--VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT----------MR- 72 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC--SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSC----------SC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc--cccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHH----------HH-
Confidence 356899999999999999999999873 23344445544432 222366789999999754211 11
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
......+|++++|+|++.+......+.+..+...+.|+++|+||+|+...
T Consensus 73 --~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 73 --ARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp --CSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCS
T ss_pred --HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcC
Confidence 12234589999999988776677777777777778999999999999864
No 36
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.75 E-value=9.6e-18 Score=150.15 Aligned_cols=139 Identities=27% Similarity=0.341 Sum_probs=90.0
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE---EEeCCcEEEEeCCCCCCCccc--hHHHHHHH-H
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAK--EEVKDAWE-E 163 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~---~~~~~~~~liDTpG~~~~~~~--~~~~~~~~-~ 163 (243)
...++|+++|++|||||||+|+|++. ....+++++|+|++... ...|..+.+|||||+...... +..+ .+. .
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~-~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e-~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVE-KYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTS-TTEEECCCC------CCEEEEETTEEEEESSCSCC-----------C-CSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCC-cccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHH-HHHHH
Confidence 34689999999999999999999998 44678999999998632 233667999999998532110 0000 000 0
Q ss_pred HHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH--HHHHHHHHHHHHh
Q 026112 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLK 233 (243)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~--~~~~~~~l~~~l~ 233 (243)
....++. .+|++++|+|+..+.+..+..+...+...+.|+++|+||+|+..... ..+....+.+.+.
T Consensus 256 ~~~~~i~---~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 324 (439)
T 1mky_A 256 RVVDSIE---KADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLY 324 (439)
T ss_dssp HHHHHHH---HCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCG
T ss_pred HHHHHHh---hCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhc
Confidence 0011222 28999999999888777777788888888999999999999986543 2333334444443
No 37
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.74 E-value=8.4e-18 Score=152.12 Aligned_cols=140 Identities=25% Similarity=0.364 Sum_probs=97.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccc-----cccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----VVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWE 162 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~-----~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~ 162 (243)
..++|+++|.+|+|||||+|+|++... .......+|+|.+..+. ..+..+.+|||||+.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~------------- 84 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA------------- 84 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH-------------
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH-------------
Confidence 357999999999999999999998731 12234456777775332 235689999999962
Q ss_pred HHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhC----CCc
Q 026112 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN----NSL 238 (243)
Q Consensus 163 ~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~----~~~ 238 (243)
.+..........+|++++|+|++.+...+..+.+..+...++|+++|+||+|+.++.......+.+++.+... ..+
T Consensus 85 ~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 164 (482)
T 1wb1_A 85 DLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS 164 (482)
T ss_dssp HHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC
T ss_pred HHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccce
Confidence 2333334444569999999999988888888888888888999999999999998766666777777777655 345
Q ss_pred cccCC
Q 026112 239 VQPVV 243 (243)
Q Consensus 239 ~~pi~ 243 (243)
++|+|
T Consensus 165 ii~vS 169 (482)
T 1wb1_A 165 IIPIS 169 (482)
T ss_dssp EEECC
T ss_pred EEEEE
Confidence 55654
No 38
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.74 E-value=2.5e-18 Score=133.48 Aligned_cols=116 Identities=30% Similarity=0.332 Sum_probs=76.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EE-eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|+++|++|+|||||+|+|++.. ..++..+++|.+... .. .+..+.+|||||+........ .+.+...|+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----~~~~~~~~~ 77 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI----DEIIARDYI 77 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS--SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSH----HHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcch----hHHHHHHHH
Confidence 689999999999999999999873 345667777765432 22 356799999999764321110 112333333
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.. ..+|++++|+|++.. .....++..+...+.|+++|+||+|+..
T Consensus 78 ~~-~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 78 IN-EKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp HH-HCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred hc-CCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhcc
Confidence 21 238999999998752 2334456666667899999999999853
No 39
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.74 E-value=3e-18 Score=149.82 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=86.2
Q ss_pred CCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 88 ~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
.+.+..+|+|+|.||||||||+|+|++. + +.++++||||+++.... .+..+.++||||+....... ..+
T Consensus 68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~-~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~------~~~ 139 (376)
T 4a9a_A 68 ARTGVASVGFVGFPSVGKSTLLSKLTGT-E-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDG------RGR 139 (376)
T ss_dssp CBCSSEEEEEECCCCHHHHHHHHHHHSB-C-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----------CH
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHhCC-C-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhh------hHH
Confidence 4566789999999999999999999998 4 77899999999986543 37789999999987642211 123
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhc-----CCcEEEEeecCCC
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLTKTDT 215 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-----~~p~i~v~nK~D~ 215 (243)
..+++...+.+|++++|+|++++.... ..+...|... ..|.++++||.|.
T Consensus 140 g~~~l~~i~~ad~il~vvD~~~p~~~~-~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 140 GKQVIAVARTCNLLFIILDVNKPLHHK-QIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp HHHHHHHHHHCSEEEEEEETTSHHHHH-HHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred HHHHHHHHHhcCccccccccCccHHHH-HHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 344555555699999999998643221 2233344433 4688999999996
No 40
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.73 E-value=2.9e-17 Score=150.65 Aligned_cols=135 Identities=21% Similarity=0.289 Sum_probs=94.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccc--cccCCCCceEEEEEEEeC------------------------------
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV--RTSDKPGLTQTINFFKLG------------------------------ 137 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~--~vs~~~gtT~~~~~~~~~------------------------------ 137 (243)
...++|+++|.+|+|||||+|+|++. ... .++..++|++........
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~-~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQ-EVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTS-CCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC-ccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 45789999999999999999999998 433 467777776543221110
Q ss_pred ------------CcEEEEeCCCCCCCccchHHHHH--HHHHHHHHHhcccCccEEEEEEeCCC-CCChhhHHHHHHHHhc
Q 026112 138 ------------TKLCLVDLPGYGFAYAKEEVKDA--WEELVKEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS 202 (243)
Q Consensus 138 ------------~~~~liDTpG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~~ 202 (243)
..+.+|||||+...... .+.+. +......++.. +|++++|+|+.. +....+..+++.+...
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~-~~~~~~~f~~~~~~~l~~---aD~il~VvDa~~~~~~~~~~~~l~~l~~~ 217 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQ-RVSRGYDFPAVLRWFAER---VDLIILLFDAHKLEISDEFSEAIGALRGH 217 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC--------CCSCHHHHHHHHHHH---CSEEEEEEETTSCCCCHHHHHHHHHTTTC
T ss_pred cceEEeccccccCCEEEEECcCCCCcchh-HHHHHhhHHHHHHHHHHh---CCEEEEEEeCCcCCCCHHHHHHHHHHHhc
Confidence 26899999998752110 01100 22233333333 899999999977 4667777888888877
Q ss_pred CCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 203 QTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 203 ~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
+.|+++|+||+|+....++......+.
T Consensus 218 ~~pvilVlNK~Dl~~~~el~~~~~~l~ 244 (550)
T 2qpt_A 218 EDKIRVVLNKADMVETQQLMRVYGALM 244 (550)
T ss_dssp GGGEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCccCHHHHHHHHHHhh
Confidence 899999999999998877766655554
No 41
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.73 E-value=1e-17 Score=129.28 Aligned_cols=114 Identities=15% Similarity=0.049 Sum_probs=66.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.++|+++|.+|+|||||+|+|++. .....++.+++|........ ...+.+|||||... +..+...++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~ 70 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG----------GRWLPGHCM 70 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC-----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCc-cccCCCCccccceEEEEEECCEEEEEEEEECCCCcc----------chhhhhhhh
Confidence 469999999999999999999987 44566777788776544332 34688999999643 122233333
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCChH
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~~ 219 (243)
. .+|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+....
T Consensus 71 ~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 122 (166)
T 3q72_A 71 A---MGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 122 (166)
T ss_dssp -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSC
T ss_pred h---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccccc
Confidence 3 3899999999875422111 233333433 368999999999997543
No 42
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.73 E-value=8.1e-18 Score=148.61 Aligned_cols=87 Identities=22% Similarity=0.182 Sum_probs=47.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE------------------------e---CCcEEEEeC
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------------------------L---GTKLCLVDL 145 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~------------------------~---~~~~~liDT 145 (243)
.+|+++|.||+|||||+|+|++. . ..++++|+||++..... . ...+.+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~-~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLV-D-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC-C-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 37999999999999999999998 4 77889999998764331 0 136899999
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC
Q 026112 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 187 (243)
Q Consensus 146 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~ 187 (243)
||+...... ...+...++...+.+|++++|+|++.+
T Consensus 79 pG~~~~a~~------~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAHE------GRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C---------------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchhh------hhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 998542111 123445555666779999999998764
No 43
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.73 E-value=4.4e-18 Score=131.85 Aligned_cols=114 Identities=20% Similarity=0.186 Sum_probs=73.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
..++|+++|.+|+|||||+|+|++.. .....+..+.+... ....+..+.+|||||.... ......++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~-~~~~~~~~~~~Dt~G~~~~----------~~~~~~~~- 72 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGE-VVTTIPTIGFNVET-VTYKNLKFQVWDLGGLTSI----------RPYWRCYY- 72 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSS-CCCCCCCSSEEEEE-EEETTEEEEEEEECCCGGG----------GGGGGGGC-
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC-CCCcCCcCccceEE-EEECCEEEEEEECCCChhh----------hHHHHHHh-
Confidence 45799999999999999999999873 22222322322211 1123678999999997431 11122222
Q ss_pred cccCccEEEEEEeCCCCCChh--hHHHHHHHHh---cCCcEEEEeecCCCCChH
Q 026112 171 TRVSLKRVCLLIDTKWGVKPR--DHELISLMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~--~~~~~~~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
..+|++++|+|++.+.+.. ...+...+.. .+.|+++|+||+|+....
T Consensus 73 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (171)
T 1upt_A 73 --SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 124 (171)
T ss_dssp --TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC
Confidence 3499999999988653322 2233333332 478999999999998653
No 44
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.73 E-value=2.3e-17 Score=128.56 Aligned_cols=138 Identities=15% Similarity=0.131 Sum_probs=84.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++........+..+.+........ ...+.+|||||.... ......
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~ 83 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF----------RAVTRS 83 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT----------CHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHh----------hhhHHH
Confidence 4579999999999999999999987422222333344443333333 247899999996431 122333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi~ 243 (243)
++.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+...... ..+.+++.....+..+++++
T Consensus 84 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~S 158 (179)
T 1z0f_A 84 YYRG---AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDV--TYEEAKQFAEENGLLFLEAS 158 (179)
T ss_dssp HHHT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTCEEEECC
T ss_pred Hhcc---CCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccc--CHHHHHHHHHHcCCEEEEEe
Confidence 3333 899999999886422222 234444433 46899999999999653221 12233444445555666653
No 45
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.72 E-value=4e-18 Score=160.40 Aligned_cols=117 Identities=18% Similarity=0.212 Sum_probs=83.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCc--------------eEEE------E------------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL--------------TQTI------N------------------ 132 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gt--------------T~~~------~------------------ 132 (243)
..++|+++|.+|+|||||+|+|++. ....++..|+| |++. .
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~-~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGE-NLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTS-SCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 4579999999999999999999998 55677777776 3321 0
Q ss_pred ------------------EEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCCh
Q 026112 133 ------------------FFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP 190 (243)
Q Consensus 133 ------------------~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~ 190 (243)
.+.. +..+.+|||||+.+... .......++.. +|++++|+|++.+.+.
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~-------~~~~~~~~i~~---aD~vL~Vvda~~~~s~ 216 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA-------RNELSLGYVNN---CHAILFVMRASQPCTL 216 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT-------CHHHHTHHHHS---SSEEEEEEETTSTTCH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh-------HHHHHHHHHHh---CCEEEEEEeCCCccch
Confidence 0000 04799999999864211 11233344433 9999999999888777
Q ss_pred hhHHHH-HHHHhcCCcEEEEeecCCCCCh
Q 026112 191 RDHELI-SLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 191 ~~~~~~-~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
.+...+ +.+...+.|+++|+||+|+...
T Consensus 217 ~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 217 GERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred hHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 776544 3555668899999999999754
No 46
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.72 E-value=9e-18 Score=132.42 Aligned_cols=118 Identities=29% Similarity=0.293 Sum_probs=82.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|||||||+|+|++.. ..++..+++|.+..... .+..+.+|||||.......... ..+...+
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~----~~~~~~~ 80 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSID----EIIARDY 80 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC--EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHH----HHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC--ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHH----HHHHHHH
Confidence 4699999999999999999999873 45677788887654332 3678999999997653221111 1222233
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
+.. ..+|++++|+|.... .....++..+...+.|+++|+||+|+...
T Consensus 81 ~~~-~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (188)
T 2wjg_A 81 IIN-EKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKS 127 (188)
T ss_dssp HHH-HCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHHHH
T ss_pred Hhc-cCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhcccc
Confidence 321 238999999998642 33345666666678999999999998543
No 47
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.72 E-value=2.9e-17 Score=128.48 Aligned_cols=138 Identities=14% Similarity=0.100 Sum_probs=83.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++........+..+++........ +..+.+|||||.... ......
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 80 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----------HSLAPM 80 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG----------GGGTHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhh----------hhhhHH
Confidence 3469999999999999999999987321212223333333332222 347899999996431 112223
Q ss_pred HHhcccCccEEEEEEeCCCCCCh-hhHHHHHHHHhc---CCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~-~~~~~~~~l~~~---~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi~ 243 (243)
++.. +|++++|+|++.+.+. ....++..+... +.|+++|+||+|+....+. ..+.+++.....+..+++++
T Consensus 81 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~S 155 (181)
T 2efe_B 81 YYRG---AAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKV--TAEDAQTYAQENGLFFMETS 155 (181)
T ss_dssp HHTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTTCEEEECC
T ss_pred Hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccC--CHHHHHHHHHHcCCEEEEEE
Confidence 3333 8999999998764321 223445555443 6889999999999754321 11233444444555555553
No 48
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.72 E-value=1.2e-17 Score=132.77 Aligned_cols=115 Identities=16% Similarity=0.189 Sum_probs=74.5
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccc--cCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~v--s~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
...++|+++|.+|+|||||+|+|++.. ...+ .+..+.+... +...+..+.+|||||.... ..+...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~-~~~~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 82 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ-SSSKHITATVGYNVET-FEKGRVAFTVFDMGGAKKF----------RGLWET 82 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC-----CCCCCSSEEEEE-EEETTEEEEEEEECCSGGG----------GGGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC-CcccccccccceeEEE-EEeCCEEEEEEECCCCHhH----------HHHHHH
Confidence 456799999999999999999999983 2332 4444433222 2234678999999997431 112222
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc-----------CCcEEEEeecCCCCChH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS-----------QTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~-----------~~p~i~v~nK~D~~~~~ 219 (243)
++ ..+|++++|+|++...+... ..++..+... +.|+++|+||+|+....
T Consensus 83 ~~---~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 143 (199)
T 4bas_A 83 YY---DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK 143 (199)
T ss_dssp GC---TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC
T ss_pred HH---hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC
Confidence 22 34999999999986532222 1333333222 78999999999998763
No 49
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.72 E-value=4.6e-17 Score=129.75 Aligned_cols=122 Identities=14% Similarity=0.104 Sum_probs=75.5
Q ss_pred CCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 89 ~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
....++|+++|.+|||||||+|++.+............++...... .....+.+|||||........ |. .
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-----~~--~ 89 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT-----FD--Y 89 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTT-----CC--H
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhh-----hh--c
Confidence 3457899999999999999999998863211111112222222221 124679999999964311100 10 0
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhc-----CCcEEEEeecCCCCChHH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-----~~p~i~v~nK~D~~~~~~ 220 (243)
..++.. +|++++|+|++.........+..++... +.|+++|+||+|+.....
T Consensus 90 ~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~ 146 (196)
T 3llu_A 90 EMIFRG---TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDH 146 (196)
T ss_dssp HHHHHT---CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHH
T ss_pred cccccc---CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhh
Confidence 233333 8999999999876334444555555432 789999999999987543
No 50
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.72 E-value=3e-18 Score=152.31 Aligned_cols=121 Identities=28% Similarity=0.319 Sum_probs=81.4
Q ss_pred CCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CC-cEEEEeCCCCCCCccc--hHHHHHHH
Q 026112 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GT-KLCLVDLPGYGFAYAK--EEVKDAWE 162 (243)
Q Consensus 89 ~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~-~~~liDTpG~~~~~~~--~~~~~~~~ 162 (243)
....++|+++|.+|+|||||+|+|++. ....++..+|+|.+...... +. .+.+|||||+.+.... .....
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~--- 106 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEK--- 106 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHH---
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcC-CCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHH---
Confidence 345689999999999999999999998 44567888999888654432 33 7999999998753211 11111
Q ss_pred HHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH
Q 026112 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 163 ~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~ 220 (243)
...++. .+|++++|+|+ +.......+++.+...+.|+++|+||+|+.....
T Consensus 107 --~~~~l~---~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~ 157 (423)
T 3qq5_A 107 --ARRVFY---RADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKA 157 (423)
T ss_dssp --HHHHHT---SCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCC
T ss_pred --HHHHHh---cCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccH
Confidence 122333 39999999998 5667788899999988999999999999986543
No 51
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.72 E-value=8.8e-17 Score=142.13 Aligned_cols=139 Identities=19% Similarity=0.248 Sum_probs=97.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccc---cc-----------ccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGV---VR-----------TSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAK 154 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~---~~-----------vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~ 154 (243)
..+|+++|.+|+|||||+++|++.... .. .....|.|.+..... .+..+.+|||||+.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~----- 77 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA----- 77 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH-----
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH-----
Confidence 468999999999999999999974100 00 011456777764433 25789999999963
Q ss_pred hHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCC-hHHHHHHHHHHHHHH
Q 026112 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVF-PIDVARRAMQIEESL 232 (243)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~-~~~~~~~~~~l~~~l 232 (243)
.+..........+|++++|+|++.+...+..+.+..+...++| +++|+||+|+.. +.......+.+++.+
T Consensus 78 --------~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l 149 (397)
T 1d2e_A 78 --------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELL 149 (397)
T ss_dssp --------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHH
Confidence 2333334445569999999999988888888888888888999 789999999985 333334445566666
Q ss_pred hhCC-----CccccCC
Q 026112 233 KANN-----SLVQPVV 243 (243)
Q Consensus 233 ~~~~-----~~~~pi~ 243 (243)
...+ .+++|+|
T Consensus 150 ~~~~~~~~~~~~i~~S 165 (397)
T 1d2e_A 150 TEFGYKGEETPIIVGS 165 (397)
T ss_dssp HHTTSCTTTSCEEECC
T ss_pred HHcCCCcccCcEEEee
Confidence 6554 3455654
No 52
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.72 E-value=1.8e-17 Score=128.10 Aligned_cols=114 Identities=13% Similarity=0.072 Sum_probs=78.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+|+|++........+..|++........ +..+.+|||||+... ......+
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~ 75 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF----------RALAPMY 75 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGTHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhh----------hcccHhh
Confidence 469999999999999999999998433445566666655444333 357899999997431 1122333
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~ 218 (243)
+.. +|++++|+|++.+.+... ..++..+... ..|+++|+||+|+...
T Consensus 76 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 76 YRG---SAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp HTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred CcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccc
Confidence 333 899999999876432222 3445555433 5789999999999754
No 53
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.72 E-value=2.6e-18 Score=148.90 Aligned_cols=140 Identities=19% Similarity=0.198 Sum_probs=91.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE--e--CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~--~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+.|+|+|.+|||||||+|+|++.. ..+++++++|.+..... . +..+.++||||+.+.... +..+...
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~--~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~------~~~l~~~ 229 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ------GVGLGHQ 229 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC--CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTC------TTTTHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC--CccccCCccccCceEEEEEeCCCceEEEecCCCCcccccc------cchhHHH
Confidence 4689999999999999999999873 55788899888765433 2 267999999997531110 0112233
Q ss_pred HHhcccCccEEEEEEeCCC---CCChhh-HHHHHHHHh-----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCc
Q 026112 168 YVSTRVSLKRVCLLIDTKW---GVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 238 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~---~~~~~~-~~~~~~l~~-----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~ 238 (243)
|++....++++++|+|++. .....+ ..+...+.. ..+|+++|+||+|+....+ ..+.+.+.+... ..
T Consensus 230 fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e---~~~~l~~~l~~~-~~ 305 (342)
T 1lnz_A 230 FLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE---NLEAFKEKLTDD-YP 305 (342)
T ss_dssp HHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH---HHHHHHHHCCSC-CC
T ss_pred HHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHH---HHHHHHHHhhcC-CC
Confidence 3444444999999999875 211222 345555654 3689999999999987542 233444444322 34
Q ss_pred cccCC
Q 026112 239 VQPVV 243 (243)
Q Consensus 239 ~~pi~ 243 (243)
++|+|
T Consensus 306 v~~iS 310 (342)
T 1lnz_A 306 VFPIS 310 (342)
T ss_dssp BCCCS
T ss_pred EEEEE
Confidence 55553
No 54
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.72 E-value=5.2e-17 Score=144.17 Aligned_cols=141 Identities=19% Similarity=0.307 Sum_probs=97.9
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccc-cccccCCCCceEEEEEEE--e------------------------CCcEEE
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFK--L------------------------GTKLCL 142 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~-~~~vs~~~gtT~~~~~~~--~------------------------~~~~~l 142 (243)
...++|+++|.+|+|||||+++|++... .......+|+|.+..+.. . ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 3457999999999999999999997521 111222355565543211 0 146899
Q ss_pred EeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC-ChhhHHHHHHHHhcCC-cEEEEeecCCCCChHH
Q 026112 143 VDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFPID 220 (243)
Q Consensus 143 iDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~-p~i~v~nK~D~~~~~~ 220 (243)
|||||+. .+...+......+|++++|+|++++. ..+..+.+..+...+. |+++|+||+|+.....
T Consensus 88 iDtPGh~-------------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~ 154 (410)
T 1kk1_A 88 IDAPGHE-------------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEK 154 (410)
T ss_dssp EECSSHH-------------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHH
T ss_pred EECCChH-------------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHH
Confidence 9999962 24445556666789999999999875 6666677777766665 7999999999998776
Q ss_pred HHHHHHHHHHHHhh---CCCccccCC
Q 026112 221 VARRAMQIEESLKA---NNSLVQPVV 243 (243)
Q Consensus 221 ~~~~~~~l~~~l~~---~~~~~~pi~ 243 (243)
.....+.+++.+.. ...+++|+|
T Consensus 155 ~~~~~~~i~~~l~~~~~~~~~~i~vS 180 (410)
T 1kk1_A 155 ALENYRQIKEFIEGTVAENAPIIPIS 180 (410)
T ss_dssp HHHHHHHHHHHHTTSTTTTCCEEECB
T ss_pred HHHHHHHHHHHHHhcCcCCCeEEEee
Confidence 66666777777765 234555553
No 55
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=127.58 Aligned_cols=115 Identities=15% Similarity=0.045 Sum_probs=71.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+|+|++. ......+.+|++........+ ..+.+|||||..... ...+...+
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~ 74 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK-QERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD--------KSWSQESC 74 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC---------------CHHHHHT
T ss_pred EEEEEEECCCCccHHHHHHHHhcC-CCccccCccccceeEEEEEECCEEEEEEEEecCCCCccc--------hhhhHHhh
Confidence 469999999999999999999998 434455667766544433332 368899999974310 11122223
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc----CCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS----QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~----~~p~i~v~nK~D~~~~ 218 (243)
+ ..+|++++|+|.+...+... ..++..+... +.|+++|+||+|+...
T Consensus 75 ~---~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 75 L---QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARC 126 (175)
T ss_dssp T---TSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTT
T ss_pred c---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccc
Confidence 2 23899999999875422111 2344444443 6899999999999754
No 56
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.72 E-value=6.6e-17 Score=130.32 Aligned_cols=126 Identities=18% Similarity=0.329 Sum_probs=82.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHH-HH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEE-LV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~-~~ 165 (243)
..++|+++|.+|+|||||+|+|++.. ....+++++.+...... +..+.+|||||... +.. +.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 72 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ---YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHES----------LRFQLL 72 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC---CCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHH----------HHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---cccccCCcceeeEEEEecCCCccEEEEEECCCChh----------HHHHHH
Confidence 45799999999999999999999873 23344444444433333 35699999999632 122 34
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHHHH----HHH-----hcCCcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS----LME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~----~l~-----~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
..|+.. +|++++|+|++. .......+.+ .+. ..+.|+++|+||+|+..........+.+.+.+.
T Consensus 73 ~~~~~~---~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~ 145 (214)
T 2fh5_B 73 DRFKSS---ARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELN 145 (214)
T ss_dssp HHHGGG---EEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhh---CCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHH
Confidence 444443 899999999875 1122222222 222 236899999999999876555556666666555
No 57
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.72 E-value=4.6e-17 Score=144.30 Aligned_cols=140 Identities=18% Similarity=0.148 Sum_probs=95.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc--cc-----cc--cc------CCCCceEEEEEEE---eCCcEEEEeCCCCCCCc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW--GV-----VR--TS------DKPGLTQTINFFK---LGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~--~~-----~~--vs------~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~ 152 (243)
..++|+++|.+|+|||||+|+|++.. .. .. .. ...|+|.+..... .+..+.+|||||+.+
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~-- 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD-- 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG--
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH--
Confidence 45799999999999999999999831 00 00 00 1345565543322 357899999999753
Q ss_pred cchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCCh-HHHHHHHHHHHH
Q 026112 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFP-IDVARRAMQIEE 230 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~-~~~~~~~~~l~~ 230 (243)
+...+..++ ..+|++++|+|++++...+..+++..+...++| +++|+||+|+... .......+.+++
T Consensus 88 --------f~~~~~~~~---~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~ 156 (405)
T 2c78_A 88 --------YIKNMITGA---AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRD 156 (405)
T ss_dssp --------GHHHHHHHH---TTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHH---HHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHH
Confidence 112222233 349999999999988888888888888888999 8999999999853 333344455666
Q ss_pred HHhhCC-----CccccCC
Q 026112 231 SLKANN-----SLVQPVV 243 (243)
Q Consensus 231 ~l~~~~-----~~~~pi~ 243 (243)
.+...+ .+++|+|
T Consensus 157 ~l~~~~~~~~~~~~i~~S 174 (405)
T 2c78_A 157 LLNQYEFPGDEVPVIRGS 174 (405)
T ss_dssp HHHHTTSCTTTSCEEECC
T ss_pred HHHHhcccccCCCEEEcc
Confidence 665544 3455554
No 58
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.72 E-value=7.6e-17 Score=144.11 Aligned_cols=140 Identities=16% Similarity=0.194 Sum_probs=92.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc---------ccccCCC----------------------CceEEEEEEE---e
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV---------VRTSDKP----------------------GLTQTINFFK---L 136 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~---------~~vs~~~----------------------gtT~~~~~~~---~ 136 (243)
..++|+++|.+|+|||||+|+|++.... ...+..+ |.|.++.+.. .
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 4579999999999999999999875310 1111222 3444433322 2
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCC-cEEEEeecCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDT 215 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-p~i~v~nK~D~ 215 (243)
+..+.+|||||+.+ +...+..++ ..+|++++|+|++.+...+..+++..+...+. |+++|+||+|+
T Consensus 103 ~~~~~iiDtpGh~~----------f~~~~~~~~---~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl 169 (434)
T 1zun_B 103 KRKFIIADTPGHEQ----------YTRNMATGA---STCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDL 169 (434)
T ss_dssp SEEEEEEECCCSGG----------GHHHHHHHH---TTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTT
T ss_pred CceEEEEECCChHH----------HHHHHHHHH---hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcC
Confidence 55799999999743 112222333 34999999999998887778777777777777 59999999999
Q ss_pred CC--hHHHHHHHHHHHHHHhhCC-----CccccCC
Q 026112 216 VF--PIDVARRAMQIEESLKANN-----SLVQPVV 243 (243)
Q Consensus 216 ~~--~~~~~~~~~~l~~~l~~~~-----~~~~pi~ 243 (243)
.. +.......+.+++.+...+ ..++|+|
T Consensus 170 ~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vS 204 (434)
T 1zun_B 170 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMS 204 (434)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECC
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEe
Confidence 86 3334455566676666655 3455553
No 59
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.71 E-value=5.2e-17 Score=141.47 Aligned_cols=126 Identities=20% Similarity=0.256 Sum_probs=87.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccc-----cccCCCC----------------------ceEE-------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-----RTSDKPG----------------------LTQT------------- 130 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~-----~vs~~~g----------------------tT~~------------- 130 (243)
..|+|+++|.+|+|||||+|+|++.. .. .++..|+ +|++
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~-~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRD-FLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSC-CSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC-cCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999973 22 3444454 2222
Q ss_pred -------------EEEEE-eCCcEEEEeCCCCCCCcc---chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhH
Q 026112 131 -------------INFFK-LGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH 193 (243)
Q Consensus 131 -------------~~~~~-~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~ 193 (243)
+.... .+..+.+|||||+..... ...+.+.+..++..|+.. ..+++++|+|+..++...+.
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiL~v~~a~~~~~~~~~ 186 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK--ENCLILAVSPANSDLANSDA 186 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTS--TTEEEEEEEETTSCGGGCHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcC--CCeEEEEEecCCCccchhHH
Confidence 11111 146799999999875321 333444566677777763 35677788888766655554
Q ss_pred -HHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 194 -ELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 194 -~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
.+++.+...+.|+++|+||+|+....
T Consensus 187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~ 213 (353)
T 2x2e_A 187 LKVAKEVDPQGQRTIGVITKLDLMDEG 213 (353)
T ss_dssp HHHHHHHCTTCTTEEEEEECGGGSCTT
T ss_pred HHHHHHhCcCCCceEEEeccccccCcc
Confidence 47777777789999999999998653
No 60
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=2.9e-17 Score=130.43 Aligned_cols=138 Identities=14% Similarity=0.070 Sum_probs=88.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++........+..|++........ +..+.+|||||.... ......
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 91 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF----------HSLAPM 91 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGG----------GGGTHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhh----------HhhhHH
Confidence 3579999999999999999999987433456667777766554443 346899999996431 112223
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi~ 243 (243)
++.. +|++++|+|++...+... ..++..+... +.|+++|+||+|+...... ..+.+++.....+..+++++
T Consensus 92 ~~~~---~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~~~~S 166 (192)
T 2fg5_A 92 YYRG---SAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREV--PLKDAKEYAESIGAIVVETS 166 (192)
T ss_dssp HHTT---CSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHTTTCEEEECB
T ss_pred hhcc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccccc--CHHHHHHHHHHcCCEEEEEe
Confidence 3333 899999999876422222 2344444433 6899999999999643221 12234444455555555553
No 61
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.71 E-value=6.5e-17 Score=128.10 Aligned_cols=132 Identities=20% Similarity=0.223 Sum_probs=80.0
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccccc-ccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~-~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
...++|+++|.+|+|||||+|+|++.... ...+..++++.+. .+..+.+|||||+..... .+..++...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~------~~~~~~~~~ 115 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKLRY------KLSDYLKTR 115 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTCSEEEETTCCBSSC------CHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECCCCchHHH------HHHHHHHhh
Confidence 35689999999999999999999987311 1122333333322 467899999999854211 122233222
Q ss_pred HhcccCccEEEEEEeCC-CCCC--hhhHHHHHHHHh------cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 169 VSTRVSLKRVCLLIDTK-WGVK--PRDHELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~-~~~~--~~~~~~~~~l~~------~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
. ..+|++++|+|++ .... .....+...+.. .+.|+++|+||+|+..........+.+.+.++.
T Consensus 116 ~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l~~ 187 (193)
T 2ged_A 116 A---KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQK 187 (193)
T ss_dssp G---GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHH
T ss_pred c---ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHHHH
Confidence 2 3389999999987 3211 111122222221 379999999999998776666666666665543
No 62
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.71 E-value=4e-17 Score=130.41 Aligned_cols=135 Identities=13% Similarity=0.056 Sum_probs=81.8
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEeC---CcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
...++|+++|.+|+|||||+|+|++.. ....+.+++.+.. ....+ ..+.+|||||.... ..+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~ 78 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAI 78 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC---CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh----------HHH
Confidence 356799999999999999999999873 2334444443322 12222 36889999997541 122
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCcc
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 239 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~ 239 (243)
...++.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+....+. ..+.+.+.....+..+
T Consensus 79 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 153 (206)
T 2bov_A 79 RDNYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRAEQWNVNY 153 (206)
T ss_dssp HHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHTCEE
T ss_pred HHHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccc--cHHHHHHHHHHhCCeE
Confidence 3333333 899999999876421111 233333332 26899999999999754321 1122333333344455
Q ss_pred ccC
Q 026112 240 QPV 242 (243)
Q Consensus 240 ~pi 242 (243)
+++
T Consensus 154 ~~~ 156 (206)
T 2bov_A 154 VET 156 (206)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 63
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=1.7e-17 Score=131.05 Aligned_cols=113 Identities=17% Similarity=0.138 Sum_probs=73.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
..++|+++|.+|+|||||+|+|++... ....+..+.+... +...+..+.+|||||.... ......++.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~ 82 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEE-IVINNTRFLMWDIGGQESL----------RSSWNTYYT 82 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSC-EEEECCSCSSCEE-EEETTEEEEEEECCC--------------CGGGHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC-CcCcCCCccceEE-EEECCEEEEEEECCCCHhH----------HHHHHHHhc
Confidence 457999999999999999999997633 3444444433222 1223678999999997431 112223333
Q ss_pred cccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
.+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...
T Consensus 83 ---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 83 ---NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp ---TCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred ---CCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 3999999999887533222 233333322 47899999999999763
No 64
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.71 E-value=9.9e-17 Score=134.06 Aligned_cols=122 Identities=21% Similarity=0.209 Sum_probs=84.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++. ....++.++++|...... ..+..+.+|||||+.+..... . .+...+..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~--~-~~~~~i~~ 110 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE-QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN--H-QALELIKG 110 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS-CCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEEC--H-HHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccch--H-HHHHHHHH
Confidence 3479999999999999999999998 445678888887765433 236689999999986542221 1 11222333
Q ss_pred HHhcccCccEEEEEEeCCC-CCChhhHHHHHHHHhc-----CCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-----QTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~~-----~~p~i~v~nK~D~~~ 217 (243)
++. ...+|++++|+|... .+...+..+++.+... ..|+++|+||+|+..
T Consensus 111 ~l~-~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 111 FLV-NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HTT-TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HHh-cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 332 235899999987643 3555666777777653 249999999999963
No 65
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=2.6e-17 Score=127.02 Aligned_cols=113 Identities=14% Similarity=0.103 Sum_probs=74.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+|+++|.+|+|||||+|+|++........+..+.+........+ ..+.+|||||.... ......++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~~ 73 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF----------ASLAPXYY 73 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhh----------hhhhhhhh
Confidence 589999999999999999999874222334444544444333332 37899999996431 11233333
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
. .+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...
T Consensus 74 ~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 74 R---NAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp T---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred c---cCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 3 3899999999886422222 233434432 36899999999999754
No 66
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.71 E-value=4.1e-17 Score=151.36 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=96.3
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccccccccc------------------------------CCCCceEEEEE---EEe
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS------------------------------DKPGLTQTINF---FKL 136 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs------------------------------~~~gtT~~~~~---~~~ 136 (243)
...++|+++|.+|+|||||+|+|++... .... ..+|+|.+... ...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~-~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLN-IVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSS-CSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcC-CccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 4578999999999999999999997621 1111 02577776532 234
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-------CChhhHHHHHHHHhcCCc-EEE
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQTK-YQV 208 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~~~~~~~~~~~l~~~~~p-~i~ 208 (243)
+..+.+|||||+.. +..........+|++++|+|++.+ ...+..+.+..+...++| +++
T Consensus 244 ~~~~~iiDTPG~e~-------------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIV 310 (611)
T 3izq_1 244 RANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLII 310 (611)
T ss_dssp SCEEEEEECCSSSC-------------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEECCCCcc-------------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEE
Confidence 67899999999854 344455556669999999999864 334566677777777765 999
Q ss_pred EeecCCCCC--hHHHHHHHHHHHHHHhhCC-----CccccCC
Q 026112 209 VLTKTDTVF--PIDVARRAMQIEESLKANN-----SLVQPVV 243 (243)
Q Consensus 209 v~nK~D~~~--~~~~~~~~~~l~~~l~~~~-----~~~~pi~ 243 (243)
|+||+|+.. ..........+...+...+ ..++|+|
T Consensus 311 VvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vS 352 (611)
T 3izq_1 311 AMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPIS 352 (611)
T ss_dssp EEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECC
T ss_pred EEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeee
Confidence 999999987 3334444555555554333 3455654
No 67
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.71 E-value=3.9e-17 Score=125.65 Aligned_cols=134 Identities=13% Similarity=0.059 Sum_probs=78.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEeC---CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|+|||||+|+|++.. ....+.+++.+... ...+ ..+.+|||||.... .....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~ 70 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAIRD 70 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C----------HHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc---cCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh----------HHHHH
Confidence 3689999999999999999999873 23333343333211 1222 36889999996431 22333
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCcccc
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~p 241 (243)
.++.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+....+. ..+.+++.....+..+++
T Consensus 71 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~ 145 (168)
T 1u8z_A 71 NYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRADQWNVNYVE 145 (168)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCS--CHHHHHHHHHHHTCEEEE
T ss_pred HHhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCcc--CHHHHHHHHHHcCCeEEE
Confidence 33333 899999999875422111 233333322 36899999999999754321 112233333334445555
Q ss_pred CC
Q 026112 242 VV 243 (243)
Q Consensus 242 i~ 243 (243)
++
T Consensus 146 ~S 147 (168)
T 1u8z_A 146 TS 147 (168)
T ss_dssp CC
T ss_pred eC
Confidence 43
No 68
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.71 E-value=2.8e-17 Score=130.53 Aligned_cols=137 Identities=18% Similarity=0.151 Sum_probs=80.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe-C--------------------------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G-------------------------------- 137 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~-~-------------------------------- 137 (243)
..++|+++|.+|+|||||+|+|++........+..+.......... +
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 4579999999999999999999997321111111111111111111 1
Q ss_pred -------CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-cCCcEEE
Q 026112 138 -------TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-SQTKYQV 208 (243)
Q Consensus 138 -------~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-~~~p~i~ 208 (243)
..+.+|||||.... ......++. .+|++++|+|++.+.+... ..++..+.. .+.|+++
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piil 152 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERY----------ASIVPLYYR---GATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIIL 152 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGC----------TTTHHHHHT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred ccCccceeEEEEEECCCcHHH----------HHHHHHHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 57899999995431 112233333 3899999999886532222 234444433 4689999
Q ss_pred EeecCCCCChHHHHHHHHHHHHHHhhCCCccccCC
Q 026112 209 VLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 209 v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi~ 243 (243)
|+||+| ..... ...+.+++.+...+..++|++
T Consensus 153 v~NK~D-~~~~~--~~~~~~~~~~~~~~~~~~~~S 184 (208)
T 3clv_A 153 VANKID-KNKFQ--VDILEVQKYAQDNNLLFIQTS 184 (208)
T ss_dssp EEECTT-CC-CC--SCHHHHHHHHHHTTCEEEEEC
T ss_pred EEECCC-ccccc--CCHHHHHHHHHHcCCcEEEEe
Confidence 999999 32211 112344555555566666654
No 69
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=132.60 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=71.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-ccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
..++|+++|.+|+|||||+|+|++.. ......+..+.+.. .+...+..+.+|||||..... .....++
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~l~Dt~G~~~~~----------~~~~~~~ 88 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE-KFKSSSLSFTVFDMSGQGRYR----------NLWEHYY 88 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEE-EEECSSCEEEEEEECCSTTTG----------GGGGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEE-EEEECCEEEEEEECCCCHHHH----------HHHHHHH
Confidence 46799999999999999999999873 11222222222111 111236789999999965411 1122222
Q ss_pred hcccCccEEEEEEeCCCCCChh--hHHHHHHHHh-----cCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPR--DHELISLMER-----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~--~~~~~~~l~~-----~~~p~i~v~nK~D~~~~ 218 (243)
..+|++++|+|++...+.. ...+...+.. .+.|+++|+||+|+...
T Consensus 89 ---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 89 ---KEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp ---GGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred ---hcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 3389999999987642111 1222333333 47899999999999764
No 70
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.71 E-value=2.1e-17 Score=130.27 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=76.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
..++|+++|.+|+|||||+|+|++. ......+..|.+..... ..+..+.+|||||... +......++.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~-~~~~~~~t~g~~~~~~~-~~~~~l~i~Dt~G~~~----------~~~~~~~~~~ 82 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQGFNIKSVQ-SQGFKLNVWDIGGQRK----------IRPYWRSYFE 82 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS-CCEEEEEETTEEEEEEE-ETTEEEEEEECSSCGG----------GHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC-CCCcccCcCCeEEEEEE-ECCEEEEEEECCCCHH----------HHHHHHHHhC
Confidence 4679999999999999999999987 43445555554433222 2367899999999643 1223334443
Q ss_pred cccCccEEEEEEeCCCCCChhh-HHHHH-HHH---hcCCcEEEEeecCCCCChH
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRD-HELIS-LME---RSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~-~l~---~~~~p~i~v~nK~D~~~~~ 219 (243)
. +|++++|+|++...+... ..++. .+. ..+.|+++|+||+|+....
T Consensus 83 ~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 83 N---TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (181)
T ss_dssp T---CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred C---CCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence 3 899999999876422222 12222 222 2468999999999998643
No 71
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.71 E-value=4.5e-17 Score=128.80 Aligned_cols=115 Identities=19% Similarity=0.166 Sum_probs=73.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeC---CcEEEEeCCCCCCCccchHHHHHHH-HHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWE-ELVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~-~~~~ 166 (243)
..++|+++|.+|+|||||+|+|++........+..+++........+ ..+.+|||||... +. .+..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~ 88 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER----------FRKSMVQ 88 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH----------HHTTTHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchh----------hhhhhhH
Confidence 45799999999999999999999873212222333333333333322 4789999999531 12 2333
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~ 218 (243)
.++.. +|++++|+|++...+... ..++..+. ..+.|+++|+||+|+...
T Consensus 89 ~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 89 HYYRN---VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp HHHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred HHhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 44443 899999999876422111 23333333 236899999999999654
No 72
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.71 E-value=5.4e-17 Score=146.92 Aligned_cols=131 Identities=15% Similarity=0.143 Sum_probs=87.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccc-----------------------------cccccCCCCceEEEEEEE---eCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----------------------------VVRTSDKPGLTQTINFFK---LGT 138 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~-----------------------------~~~vs~~~gtT~~~~~~~---~~~ 138 (243)
...+|+++|.+|+|||||+|+|++... .......+|+|.+..... .+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 457999999999999999999986511 011223456777654333 367
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-------CChhhHHHHHHHHhcCC-cEEEEe
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQT-KYQVVL 210 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~~~~~~~~~~~l~~~~~-p~i~v~ 210 (243)
.+.+|||||+.+ +...+..++ ..+|++++|+|++.+ ......+.+..+...+. |+++|+
T Consensus 112 ~~~iiDTPG~~~----------f~~~~~~~~---~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvvi 178 (483)
T 3p26_A 112 NFTIVDAPGHRD----------FVPNAIMGI---SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAM 178 (483)
T ss_dssp EEEEECCCCCGG----------GHHHHHHHH---TTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred eEEEEECCCcHH----------HHHHHHHhh---hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEE
Confidence 899999999843 122223333 349999999999876 34566677777777775 599999
Q ss_pred ecCCCCC--hHHHHHHHHHHHHHHhh
Q 026112 211 TKTDTVF--PIDVARRAMQIEESLKA 234 (243)
Q Consensus 211 nK~D~~~--~~~~~~~~~~l~~~l~~ 234 (243)
||+|+.. .....+..+.+.+.+..
T Consensus 179 NK~Dl~~~~~~~~~~i~~~~~~~l~~ 204 (483)
T 3p26_A 179 NKMDNVDWSQQRFEEIKSKLLPYLVD 204 (483)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHH
T ss_pred ECcCcccchHHHHHHHHHHHHHHHHH
Confidence 9999986 33344455555555543
No 73
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.71 E-value=7.8e-17 Score=142.75 Aligned_cols=140 Identities=18% Similarity=0.245 Sum_probs=93.0
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--------------E-----E---EEeCCcEEEEeCCC
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--------------N-----F---FKLGTKLCLVDLPG 147 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--------------~-----~---~~~~~~~~liDTpG 147 (243)
...++|+++|.+|+|||||+|+|++.. ......+..+|... . . ......+.+|||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIW-TSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCC-CCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcc-cccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 456899999999999999999999852 11111111111100 0 0 00114789999999
Q ss_pred CCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC-ChhhHHHHHHHHhcCC-cEEEEeecCCCCChHHHHHHH
Q 026112 148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFPIDVARRA 225 (243)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~-p~i~v~nK~D~~~~~~~~~~~ 225 (243)
+.+ +..........+|++++|+|+..+. ..+..+++..+...+. |+++|+||+|+.+..+.....
T Consensus 85 h~~-------------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~ 151 (403)
T 3sjy_A 85 HEV-------------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQY 151 (403)
T ss_dssp CGG-------------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHH
T ss_pred cHH-------------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHH
Confidence 743 1222222233499999999999875 6667777777777665 899999999999987777777
Q ss_pred HHHHHHHhhCC---CccccCC
Q 026112 226 MQIEESLKANN---SLVQPVV 243 (243)
Q Consensus 226 ~~l~~~l~~~~---~~~~pi~ 243 (243)
+.+++.+...+ .+++|+|
T Consensus 152 ~~i~~~l~~~~~~~~~ii~vS 172 (403)
T 3sjy_A 152 RQIKQFTKGTWAENVPIIPVS 172 (403)
T ss_dssp HHHHHHHTTSTTTTCCEEECB
T ss_pred HHHHHHHHhhCCCCCEEEEEE
Confidence 77777775543 3455543
No 74
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.71 E-value=4.9e-17 Score=125.51 Aligned_cols=137 Identities=15% Similarity=0.082 Sum_probs=83.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+|+|++........+..+++........ +..+.+|||||.... ......+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~ 75 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY----------HSLAPMY 75 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh----------hhhhHHh
Confidence 468999999999999999999987322223344455444433332 347899999996431 1122333
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi~ 243 (243)
+. .+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...... ..+.+.+.....+..+++++
T Consensus 76 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1r2q_A 76 YR---GAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAV--DFQEAQSYADDNSLLFMETS 149 (170)
T ss_dssp HT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTTCEEEECC
T ss_pred cc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcccccc--CHHHHHHHHHHcCCeEEEEe
Confidence 33 3899999999876422111 234444433 26889999999998653221 11223334444555555553
No 75
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=132.45 Aligned_cols=115 Identities=24% Similarity=0.222 Sum_probs=69.8
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
...++|+++|.+|+|||||+|+|++........+..+++........ ...+.+|||||.... .....
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~ 95 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF----------RSIAK 95 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC----------HHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch----------hhhHH
Confidence 45689999999999999999999987422333444444433333332 245899999996431 12233
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
.++.. +|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+..
T Consensus 96 ~~~~~---~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 96 SYFRK---ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRD 147 (199)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHH
T ss_pred HHHhh---CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 33333 899999999876422222 234444443 3689999999999863
No 76
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.70 E-value=1.1e-16 Score=142.03 Aligned_cols=141 Identities=23% Similarity=0.305 Sum_probs=94.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccc-cccccCCCCceEEEEEEEe--------------------------CCcEEE
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFKL--------------------------GTKLCL 142 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~-~~~vs~~~gtT~~~~~~~~--------------------------~~~~~l 142 (243)
...++|+++|.+++|||||+++|++... .......+|.|.+..+... ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 3567999999999999999999997521 1112223566665432110 146899
Q ss_pred EeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC-ChhhHHHHHHHHhcCC-cEEEEeecCCCCChHH
Q 026112 143 VDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFPID 220 (243)
Q Consensus 143 iDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~-p~i~v~nK~D~~~~~~ 220 (243)
|||||+. .+...+......+|++++|+|++++. ..+..+.+..+...+. |+++|+||+|+.....
T Consensus 86 iDtPGh~-------------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~ 152 (408)
T 1s0u_A 86 VDSPGHE-------------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQ 152 (408)
T ss_dssp EECSSHH-------------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTT
T ss_pred EECCCHH-------------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHH
Confidence 9999962 34455666667789999999999875 5666677767766665 7999999999987654
Q ss_pred HHHHHHHHHHHHhh---CCCccccCC
Q 026112 221 VARRAMQIEESLKA---NNSLVQPVV 243 (243)
Q Consensus 221 ~~~~~~~l~~~l~~---~~~~~~pi~ 243 (243)
.....+.+++.+.. ...+++|+|
T Consensus 153 ~~~~~~~i~~~l~~~~~~~~~~i~vS 178 (408)
T 1s0u_A 153 AEENYEQIKEFVKGTIAENAPIIPIS 178 (408)
T ss_dssp TTTHHHHHHHHHTTSTTTTCCEEEC-
T ss_pred HHHHHHHHHHHHhhcCCCCCeEEEee
Confidence 44445556666654 234555654
No 77
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.70 E-value=4.1e-17 Score=125.44 Aligned_cols=110 Identities=13% Similarity=0.067 Sum_probs=69.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||+|+|++... ...+.+++.+. ..... +..+.+|||||.... ..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~~ 70 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTF---IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF----------ASMRDL 70 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC---CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC---cccCCCCcceeEEEEEEECCEEEEEEEEECCCchhh----------HHHHHH
Confidence 6899999999999999999998732 22333333222 22222 234889999996531 122233
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|.....+... ..++..+. ..+.|+++|+||+|+...
T Consensus 71 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 71 YIKN---GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123 (167)
T ss_dssp HHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred Hhcc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccc
Confidence 3333 899999999876422111 22222222 247899999999998654
No 78
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.70 E-value=7.2e-17 Score=126.61 Aligned_cols=135 Identities=13% Similarity=0.075 Sum_probs=82.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++.. ....+.+++.+... ... + ..+.+|||||.... ..+.
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~ 83 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAIR 83 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC---CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCC---CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCccc----------HHHH
Confidence 45799999999999999999999873 23344444433221 122 2 36889999997541 1223
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccc
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~ 240 (243)
..++.. +|++++|+|++....... ..++..+.. .+.|+++|+||+|+...... ..+.+++.....+..++
T Consensus 84 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~ 158 (187)
T 2a9k_A 84 DNYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRAEQWNVNYV 158 (187)
T ss_dssp HHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCS--CHHHHHHHHHHTTCEEE
T ss_pred HHHhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCcc--CHHHHHHHHHHcCCeEE
Confidence 333333 899999999875421111 223333322 36899999999998754221 12234444455555555
Q ss_pred cCC
Q 026112 241 PVV 243 (243)
Q Consensus 241 pi~ 243 (243)
+++
T Consensus 159 ~~S 161 (187)
T 2a9k_A 159 ETS 161 (187)
T ss_dssp ECC
T ss_pred EeC
Confidence 553
No 79
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.70 E-value=5.4e-17 Score=126.45 Aligned_cols=114 Identities=13% Similarity=0.086 Sum_probs=71.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++........+..+.+........+ ..+.+|||||... +......
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 75 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER----------FRSLRTP 75 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGG----------GHHHHGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh----------hhhhHHH
Confidence 35799999999999999999999873212222223332222222233 3789999999642 1222223
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-------cCCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-------~~~p~i~v~nK~D~~~ 217 (243)
++ ..+|++++|+|.+.+.+... ..++..+.. .+.|+++|+||+|+..
T Consensus 76 ~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 130 (177)
T 1wms_A 76 FY---RGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE 130 (177)
T ss_dssp GG---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred HH---hcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence 33 34899999999876422221 233333332 4679999999999973
No 80
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.70 E-value=4.6e-17 Score=125.34 Aligned_cols=111 Identities=17% Similarity=0.168 Sum_probs=70.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (243)
.+|+++|.+|+|||||+|+|++.. .....+..+... ......+..+.+|||||... +..+...++.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~-- 66 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVEYKNISFTVWDVGGQDK----------IRPLWRHYFQ-- 66 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHC-SSCCCCCSSCCE-EEEECSSCEEEEEECCCCGG----------GHHHHHHHTT--
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-cCcccCcCceeE-EEEEECCEEEEEEEcCCChh----------hHHHHHHHhc--
Confidence 379999999999999999999873 222222222111 11122367899999999743 1223333443
Q ss_pred cCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 173 VSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
.+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...
T Consensus 67 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 67 -NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp -TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred -cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 3899999999876422221 223333322 27899999999999764
No 81
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.70 E-value=4e-17 Score=129.73 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=71.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++........+..+++........+ ..+.+|||||... . ......
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~------~----~~~~~~ 94 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER------F----NSITSA 94 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGG------G----HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHH------H----HHHHHH
Confidence 45689999999999999999999873212222333333333333333 3689999999643 1 222333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+...
T Consensus 95 ~~~~---~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~ 146 (192)
T 2il1_A 95 YYRS---AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 146 (192)
T ss_dssp HHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 3333 899999999886432222 234444443 36899999999999754
No 82
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.70 E-value=6.2e-17 Score=128.29 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=75.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++.. ......++++.+.. ....+ ..+.+|||||.... ....
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~ 82 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT--YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF----------RTIT 82 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------CTTH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhh----------hhhH
Confidence 35799999999999999999999874 22333444444433 22222 46899999996431 1122
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChh-hHHHHHHHHhc---CCcEEEEeecCCCCChH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS---QTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~~---~~p~i~v~nK~D~~~~~ 219 (243)
..++.. +|++++|+|++...+.. ...++..+... +.|+++|+||+|+....
T Consensus 83 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~ 137 (196)
T 3tkl_A 83 SSYYRG---AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137 (196)
T ss_dssp HHHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred HHHHhh---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc
Confidence 333333 89999999988642211 13344444433 68999999999997653
No 83
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.70 E-value=7.2e-17 Score=128.96 Aligned_cols=114 Identities=17% Similarity=0.146 Sum_probs=75.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+|+|++........+..+++........ +..+.+|||||+.. +......+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~ 77 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER----------YRTITTAY 77 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchh----------hcchHHHh
Confidence 479999999999999999999987422222333444444333332 34789999999743 12233333
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
+. .+|++++|+|++.+..... ..++..+.. .+.|+++|+||+|+...
T Consensus 78 ~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 78 YR---GAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp GG---GCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred hc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence 33 4899999999876422111 234444443 36899999999999754
No 84
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.70 E-value=6.2e-17 Score=127.49 Aligned_cols=114 Identities=17% Similarity=0.168 Sum_probs=74.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
..++|+++|.+|+|||||+|+|++.. .....+..+.+... ....+..+.+|||||... +......
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~-~~~~~~~~~~~Dt~G~~~----------~~~~~~~--- 81 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKT-LEHRGFKLNIWDVGGQKS----------LRSYWRN--- 81 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEE-EEETTEEEEEEEECCSHH----------HHTTGGG---
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEE-EEECCEEEEEEECCCCHh----------HHHHHHH---
Confidence 46799999999999999999999873 33333433433221 112367899999999632 1112222
Q ss_pred cccCccEEEEEEeCCCCCChhh-HHHHH-HHHh---cCCcEEEEeecCCCCChH
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRD-HELIS-LMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~-~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
....+|++++|+|++.+.+... ..++. .+.. .+.|+++|+||+|+....
T Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 135 (186)
T 1ksh_A 82 YFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135 (186)
T ss_dssp GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC
Confidence 2345899999999876532222 12333 3332 368999999999998653
No 85
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.70 E-value=4.8e-17 Score=127.94 Aligned_cols=133 Identities=15% Similarity=0.101 Sum_probs=79.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE--Ee-C--CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~--~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|+|||||+|+|++.. ....+++++.+.... .. + ..+.+|||||.... ..+..
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 70 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY----------SAMRD 70 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS---CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------CTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHH----------HHHHH
Confidence 4689999999999999999999873 344555555443221 12 2 34778999996432 11222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCcccc
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~p 241 (243)
.++.. +|++++|+|.....+... ..++..+.. .+.|+++|+||+|+............+.+.+ +..+++
T Consensus 71 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~ 144 (189)
T 4dsu_A 71 QYMRT---GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSY---GIPFIE 144 (189)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHH---TCCEEE
T ss_pred HHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHc---CCeEEE
Confidence 33333 899999999876422111 233333333 3689999999999975433333333333333 344555
Q ss_pred CC
Q 026112 242 VV 243 (243)
Q Consensus 242 i~ 243 (243)
++
T Consensus 145 ~S 146 (189)
T 4dsu_A 145 TS 146 (189)
T ss_dssp CC
T ss_pred Ee
Confidence 43
No 86
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.70 E-value=8.7e-17 Score=126.83 Aligned_cols=115 Identities=19% Similarity=0.116 Sum_probs=72.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE-EEEEEe-C-----------CcEEEEeCCCCCCCccchHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFKL-G-----------TKLCLVDLPGYGFAYAKEEV 157 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~-~~~~~~-~-----------~~~~liDTpG~~~~~~~~~~ 157 (243)
..++|+++|.+|+|||||+|+|++........+..+.+.. ...... + ..+.+|||||...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------- 82 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER------- 82 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-------
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-------
Confidence 3579999999999999999999987321111222222221 112222 2 3689999999743
Q ss_pred HHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 158 KDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
+......++ ..+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...
T Consensus 83 ---~~~~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (195)
T 3bc1_A 83 ---FRSLTTAFF---RDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQ 142 (195)
T ss_dssp ---GHHHHHHTT---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGG
T ss_pred ---HHHHHHHHH---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 122333333 34999999999876432222 344444443 47899999999999753
No 87
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=4.2e-17 Score=127.41 Aligned_cols=114 Identities=14% Similarity=0.181 Sum_probs=71.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++.. .......+.++.+.. ....+ ..+.+|||||... +....
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~~ 77 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGA-FLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER----------FRSVT 77 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC-CCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC-CCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHH
Confidence 45799999999999999999999873 222233333333332 22222 3789999999643 12222
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
..++ ..+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...
T Consensus 78 ~~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 78 HAYY---RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 131 (180)
T ss_dssp -CCG---GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred HHHc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence 2222 34899999999876422222 234444443 46899999999999854
No 88
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.69 E-value=1.5e-17 Score=130.31 Aligned_cols=135 Identities=16% Similarity=0.089 Sum_probs=78.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++... ...+.+++.+. ..... + ..+.+|||||...... +.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~ 71 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF---VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI----------FP 71 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC---CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCC----------CC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC---CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhH----------HH
Confidence 457999999999999999999997632 33333333322 12222 2 4678999999754211 11
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHH----HhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccc
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l----~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~ 240 (243)
..++ ..+|++++|+|.+...+... ..++..+ ...+.|+++|+||+|+....... .+.+++.....+..++
T Consensus 72 ~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~ 146 (181)
T 3t5g_A 72 QTYS---IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVIS--YEEGKALAESWNAAFL 146 (181)
T ss_dssp GGGT---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSC--HHHHHHHHHHTTCEEE
T ss_pred HHHH---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceec--HHHHHHHHHHhCCcEE
Confidence 1122 23899999999876321111 1233223 22368999999999996543221 1223334444455555
Q ss_pred cCC
Q 026112 241 PVV 243 (243)
Q Consensus 241 pi~ 243 (243)
+++
T Consensus 147 ~~S 149 (181)
T 3t5g_A 147 ESS 149 (181)
T ss_dssp ECC
T ss_pred EEe
Confidence 553
No 89
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.69 E-value=4.4e-17 Score=129.17 Aligned_cols=137 Identities=15% Similarity=0.092 Sum_probs=82.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++........+..+++....... .+..+.+|||||+.... .+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~ 93 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR----------AITSA 93 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC----------TTHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh----------hhhHH
Confidence 357999999999999999999998732111222233333332222 24578999999975421 12223
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
++.. +|++++|+|++.+..... ..++..+.. .+.|+++|+||+|+...... ..+.++......+..++++
T Consensus 94 ~~~~---~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~ 167 (193)
T 2oil_A 94 YYRG---AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREV--PTEEARMFAENNGLLFLET 167 (193)
T ss_dssp HHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTTCEEEEE
T ss_pred Hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccccccc--CHHHHHHHHHHcCCEEEEE
Confidence 3333 899999999876422111 234444443 26899999999999754221 1122333334445555554
No 90
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=2.2e-16 Score=127.59 Aligned_cols=120 Identities=20% Similarity=0.236 Sum_probs=75.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccc-cCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~v-s~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
...++|+++|.+|+|||||+|+|++....... +..+.++.+. .+..+.+|||||+... ...+..++...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~------~~~~~~~~~~~ 79 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKL------RYKLSDYLKTR 79 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----GGSSCEEEECCCCGGG------THHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----eCceEEEEECCCcHHH------HHHHHHHHHhc
Confidence 45689999999999999999999987311111 2222222221 3568999999997431 11222222221
Q ss_pred HhcccCccEEEEEEeCC-C--CCChhhHHHHHHHHh------cCCcEEEEeecCCCCChHHHH
Q 026112 169 VSTRVSLKRVCLLIDTK-W--GVKPRDHELISLMER------SQTKYQVVLTKTDTVFPIDVA 222 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~-~--~~~~~~~~~~~~l~~------~~~p~i~v~nK~D~~~~~~~~ 222 (243)
...+|++++|+|++ . .+......+.+.+.. .+.|+++|+||+|+.......
T Consensus 80 ---~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 139 (218)
T 1nrj_B 80 ---AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 139 (218)
T ss_dssp ---GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred ---cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence 12379999999987 2 333333333333322 478999999999998764433
No 91
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.69 E-value=3.2e-17 Score=127.95 Aligned_cols=113 Identities=16% Similarity=0.170 Sum_probs=73.0
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEeC---CcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKLG---TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
...++|+++|.+|+|||||+|+|++.. ....+.+|+.+... ...+ ..+.+|||||...... +
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~----------~ 73 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSY---FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA----------M 73 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSS---CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC----------C
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCc---CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH----------H
Confidence 356799999999999999999999873 34445555443321 2222 4688999999754211 1
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHH----HhcCCcEEEEeecCCCCCh
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l----~~~~~p~i~v~nK~D~~~~ 218 (243)
...++.. +|++++|+|.+....... ..++..+ ...+.|+++|+||+|+...
T Consensus 74 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 74 REQYMRA---GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ 129 (181)
T ss_dssp HHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGG
T ss_pred HHHHHhh---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 1222222 899999999876321111 1222222 2347899999999999754
No 92
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.69 E-value=3.6e-17 Score=129.42 Aligned_cols=115 Identities=16% Similarity=0.089 Sum_probs=75.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++........+..+++........ +..+.+|||||...... ....
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~ 90 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT----------ITTA 90 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCC----------SGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhh----------hHHH
Confidence 3579999999999999999999987422222334444444333332 34789999999654211 1112
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~ 218 (243)
++ ..+|++++|+|++...+... ..++..+... +.|+++|+||+|+...
T Consensus 91 ~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 91 YY---RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp GG---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred hc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 22 34899999999876422221 3455555443 6899999999999754
No 93
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=7.6e-17 Score=124.65 Aligned_cols=114 Identities=13% Similarity=0.003 Sum_probs=70.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccccc-ccCCCCceEEEEEEE-eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR-TSDKPGLTQTINFFK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~-vs~~~gtT~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.++|+++|.+|+|||||+|+|++...... ......++....... ....+.+|||||.... ..+...++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~~ 72 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF----------PAMQRLSI 72 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC----------HHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhh----------HHHHHHhc
Confidence 46899999999999999999998631111 111122222211111 1246899999997541 12222333
Q ss_pred hcccCccEEEEEEeCCCCCChh-hHHHHHHHHh-----cCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPR-DHELISLMER-----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~-----~~~p~i~v~nK~D~~~~ 218 (243)
.. +|++++|+|++.+.... ...++..+.. .+.|+++|+||+|+...
T Consensus 73 ~~---~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~ 124 (172)
T 2erx_A 73 SK---GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 124 (172)
T ss_dssp HH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred cc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc
Confidence 33 89999999987542211 2334444433 26899999999998754
No 94
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.69 E-value=4.1e-16 Score=135.95 Aligned_cols=141 Identities=21% Similarity=0.252 Sum_probs=93.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccc--hHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAK--EEVKDAWEEL 164 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~--~~~~~~~~~~ 164 (243)
...++|+++|.+|+|||||+|+|++.. ..++..+++|.+...... +..+.+|||||+.+.... .... ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~~ 239 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK--PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIE---KQA 239 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC--CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHH---HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHH---HHH
Confidence 467899999999999999999999984 556778888887765442 456999999998653211 1111 111
Q ss_pred HHHHHhcccCccEEEEEEeCCCCC--Chh-hHHHHHHHHh-c-CCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCcc
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGV--KPR-DHELISLMER-S-QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 239 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~--~~~-~~~~~~~l~~-~-~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~ 239 (243)
.. .....+|++++|+|++... ... ...++..+.. . +.|+++|+||+|+....+... +.+.+...+.++
T Consensus 240 ~~---~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~----~~~~~~~~~~~~ 312 (357)
T 2e87_A 240 IL---ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKR----LEKFVKEKGLNP 312 (357)
T ss_dssp HH---GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHH----HHHHHHHTTCCC
T ss_pred HH---HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHH----HHHHHHhcCCCe
Confidence 11 1223489999999976542 322 2455555543 2 799999999999998765432 333333445555
Q ss_pred ccC
Q 026112 240 QPV 242 (243)
Q Consensus 240 ~pi 242 (243)
+++
T Consensus 313 ~~i 315 (357)
T 2e87_A 313 IKI 315 (357)
T ss_dssp EEC
T ss_pred EEE
Confidence 554
No 95
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.69 E-value=1.4e-17 Score=131.02 Aligned_cols=113 Identities=17% Similarity=0.162 Sum_probs=76.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
..++|+++|.+|+|||||+|+|++.. .....+..|.+.... ...+..+.+|||||.... ......++
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~~----------~~~~~~~~- 86 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNE-VVHTSPTIGSNVEEI-VINNTRFLMWDIGGQESL----------RSSWNTYY- 86 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTS-CEEEECCSSSSCEEE-EETTEEEEEEEESSSGGG----------TCGGGGGG-
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC-CCccCCcCceeeEEE-EECCEEEEEEECCCCHhH----------HHHHHHHh-
Confidence 46799999999999999999999883 345555555443222 224678999999997431 11112222
Q ss_pred cccCccEEEEEEeCCCCCChhh-HHHH-HHHH---hcCCcEEEEeecCCCCCh
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRD-HELI-SLME---RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~-~~l~---~~~~p~i~v~nK~D~~~~ 218 (243)
..+|++++|+|++...+... ..++ ..+. ..+.|+++|+||+|+...
T Consensus 87 --~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 87 --TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp --TTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 34899999999887533322 2233 3333 257899999999999763
No 96
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.69 E-value=1.4e-16 Score=139.57 Aligned_cols=123 Identities=17% Similarity=0.217 Sum_probs=89.9
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
+|+++|.+|+|||||+|+|+.. |+|.+..+.. .+..+.+|||||+.+. + ..+ ..++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~----------giTi~~~~~~~~~~~~~i~iiDtPGh~~f-----~----~~~-~~~~- 81 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK----------GTSSDITMYNNDKEGRNMVFVDAHSYPKT-----L----KSL-ITAL- 81 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE----------EEESSSEEEEECSSSSEEEEEECTTTTTC-----H----HHH-HHHH-
T ss_pred EEEEECCCCCCHHHHHHHHHhC----------CEEEEeeEEEEecCCeEEEEEECCChHHH-----H----HHH-HHHH-
Confidence 8999999999999999999832 3444443333 3678999999998541 1 111 1222
Q ss_pred cccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcE-EEEee-cCCCCChHHHHHHHHHHHHHHhhCC---Ccccc
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLT-KTDTVFPIDVARRAMQIEESLKANN---SLVQP 241 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~-i~v~n-K~D~~~~~~~~~~~~~l~~~l~~~~---~~~~p 241 (243)
..+|++++|+| ..+...+..+++..+...++|. ++|+| |+|+ .+.......+.+++.+...+ .+++|
T Consensus 82 --~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~ 153 (370)
T 2elf_A 82 --NISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECIS 153 (370)
T ss_dssp --HTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEE
T ss_pred --HHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 34999999999 8788888888888888889998 99999 9999 66555556677777776543 34455
No 97
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.69 E-value=1.9e-16 Score=125.28 Aligned_cols=134 Identities=13% Similarity=0.136 Sum_probs=81.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccC-------CCCceEEEEEEEe--------CCcEEEEeCCCCCCCccch
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKL--------GTKLCLVDLPGYGFAYAKE 155 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~-------~~gtT~~~~~~~~--------~~~~~liDTpG~~~~~~~~ 155 (243)
..++|+++|.+|+|||||+|.+.+.. .....+ ....|....+... ...+.+|||||....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---- 87 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY---- 87 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH----
Confidence 35799999999999999999998763 222111 0112333332211 235889999996531
Q ss_pred HHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhH----HHHHHHHh-----cCCcEEEEeecCCCCChHHHHHHHH
Q 026112 156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH----ELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAM 226 (243)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~----~~~~~l~~-----~~~p~i~v~nK~D~~~~~~~~~~~~ 226 (243)
..+...++. .+|++++|+|++.+....+. .+.+++.. .+.|+++|+||+|+.... ..+
T Consensus 88 ------~~~~~~~~~---~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~----~~~ 154 (198)
T 3t1o_A 88 ------NASRKLILR---GVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDAL----PVE 154 (198)
T ss_dssp ------SHHHHHHTT---TCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCC----CHH
T ss_pred ------HHHHHHHHh---cCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccccc----CHH
Confidence 122333443 38999999998854322222 33334433 378999999999997642 223
Q ss_pred HHHHHHhhCCC-ccccC
Q 026112 227 QIEESLKANNS-LVQPV 242 (243)
Q Consensus 227 ~l~~~l~~~~~-~~~pi 242 (243)
.+++.+...+. .++++
T Consensus 155 ~~~~~~~~~~~~~~~~~ 171 (198)
T 3t1o_A 155 MVRAVVDPEGKFPVLEA 171 (198)
T ss_dssp HHHHHHCTTCCSCEEEC
T ss_pred HHHHHHHhcCCceEEEE
Confidence 44555556665 55555
No 98
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.69 E-value=2.2e-17 Score=133.58 Aligned_cols=137 Identities=16% Similarity=0.115 Sum_probs=83.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe-C---CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~-~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
..++|+++|.+|+|||||+|+|++...........+++........ + ..+.+|||||...... +..
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~ 79 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV----------LKD 79 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSC----------CCH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhch----------HHH
Confidence 4579999999999999999999976333334445555444433332 2 4589999999643211 112
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
.++. .+|++++|+|++.+.+..+ ..++..+.. .+.|+++|+||+|+....... ...+.......+..++++
T Consensus 80 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~ 154 (218)
T 4djt_A 80 VYYI---GASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKIS--KKLVMEVLKGKNYEYFEI 154 (218)
T ss_dssp HHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CC--HHHHHHHTTTCCCEEEEE
T ss_pred HHhh---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC--HHHHHHHHHHcCCcEEEE
Confidence 2222 2899999999986533222 234444433 368999999999997643321 123344445555555554
No 99
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=1e-16 Score=128.75 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=72.0
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
...++|+++|.+|+|||||+|+|++.. ......+.++.+. ..... + ..+.+|||||..... ..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~ 85 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDK--FNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFR----------TI 85 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCC--CCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGT----------CC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH----------HH
Confidence 346899999999999999999999873 2223333333333 22222 2 468999999964311 11
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCC
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVF 217 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~ 217 (243)
...++. .+|++++|+|++.+..... ..++..+... +.|+++|+||+|+..
T Consensus 86 ~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 139 (213)
T 3cph_A 86 TTAYYR---GAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 139 (213)
T ss_dssp CHHHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS
T ss_pred HHHHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 223333 3899999999876422111 2444444432 689999999999953
No 100
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.69 E-value=8.4e-17 Score=123.94 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=70.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||+|+|++.. ....+.+++.+... ... +..+.+|||||..... .+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~~~~ 70 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI---FVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT----------AMRDL 70 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC---CCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST----------THHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC---CCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHH----------HHHHH
Confidence 689999999999999999999873 22233333332211 112 2358899999975421 12222
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+...
T Consensus 71 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 71 YMKN---GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123 (167)
T ss_dssp HHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred Hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccc
Confidence 3332 899999999876321111 233333332 37899999999999754
No 101
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.68 E-value=1.6e-17 Score=131.91 Aligned_cols=112 Identities=16% Similarity=0.010 Sum_probs=72.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---EEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~---~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++.. ....+.+|+.+. ..... ...+.+|||||.... ..+.
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~ 88 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE---IPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY----------DRLR 88 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC---CCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------TTTG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC---CCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHH----------HHHh
Confidence 35799999999999999999999983 233333333322 11111 235689999995431 1112
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~~ 218 (243)
..+ ...+|++++|+|++...+... ..++..+... +.|+++|+||+|+...
T Consensus 89 ~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 89 PLS---YADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp GGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCT
T ss_pred Hhh---ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 222 234899999999886422222 3455555543 6899999999999753
No 102
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.68 E-value=6e-17 Score=124.89 Aligned_cols=114 Identities=17% Similarity=0.119 Sum_probs=70.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+|+|++........+..+.+........ ...+.+|||||..... .+...+
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~~ 74 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFD----------AITKAY 74 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTT----------CCCHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHH----------HHHHHH
Confidence 479999999999999999999987321111222222222222222 3478999999964311 112233
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh--cCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~p~i~v~nK~D~~~~ 218 (243)
+. .+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...
T Consensus 75 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 75 YR---GAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 124 (168)
T ss_dssp HT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGG
T ss_pred hc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcc
Confidence 33 3899999999876421111 234444433 37899999999999753
No 103
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.68 E-value=6e-17 Score=125.13 Aligned_cols=111 Identities=17% Similarity=0.177 Sum_probs=68.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|+|||||+|+|++.. ......+.++.+.. ....+ ..+.+|||||..... ....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~~~ 70 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK--FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFR----------TITT 70 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC--CCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTS----------CCCH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC--CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhh----------hhHH
Confidence 3689999999999999999999873 22223333333332 22222 368899999964311 1122
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
.++. .+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+..
T Consensus 71 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 71 AYYR---GAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 122 (170)
T ss_dssp HHHT---TEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCc
Confidence 2333 3899999999876422211 244444443 2689999999999953
No 104
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.68 E-value=3.4e-17 Score=147.27 Aligned_cols=140 Identities=18% Similarity=0.221 Sum_probs=92.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccc-c----------------------ccccC------CCCceEEEEEE---EeCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-V----------------------VRTSD------KPGLTQTINFF---KLGT 138 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~-~----------------------~~vs~------~~gtT~~~~~~---~~~~ 138 (243)
..++|+++|.+|+|||||+|+|++... . +.+.+ ..|+|.++... ..+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 346899999999999999999986410 0 00001 25667665322 2356
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCCh-------hhHHHHHHHHhcCCc-EEEEe
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-------RDHELISLMERSQTK-YQVVL 210 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~-------~~~~~~~~l~~~~~p-~i~v~ 210 (243)
.+.+|||||+.+ +..........+|++++|+|+.++..+ +..+.+..+...++| +++|+
T Consensus 86 ~~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivvi 152 (458)
T 1f60_A 86 QVTVIDAPGHRD-------------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAV 152 (458)
T ss_dssp EEEEEECCCCTT-------------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCcHH-------------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEE
Confidence 799999999753 233334445569999999999865322 455566666677886 99999
Q ss_pred ecCCCCC--hHHHHHHHHHHHHHHhhCC-----CccccCC
Q 026112 211 TKTDTVF--PIDVARRAMQIEESLKANN-----SLVQPVV 243 (243)
Q Consensus 211 nK~D~~~--~~~~~~~~~~l~~~l~~~~-----~~~~pi~ 243 (243)
||+|+.. +..+....+.+++.+...+ .+++|+|
T Consensus 153 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vS 192 (458)
T 1f60_A 153 NKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPIS 192 (458)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECC
T ss_pred EccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEee
Confidence 9999983 4444555566666555443 3455654
No 105
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.68 E-value=1.3e-16 Score=123.44 Aligned_cols=136 Identities=13% Similarity=0.065 Sum_probs=76.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+|+|++........+..+.+........ + ..+.+|||||... +......
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~- 74 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER----------FHALGPI- 74 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------CC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHh----------hhhhHHH-
Confidence 469999999999999999999987321111222222222222222 2 3688999999643 1111112
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
....+|++++|+|++...+... ..++..+.. .+.|+++|+||+|+....... .+.+++.....+..++++
T Consensus 75 --~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~ 148 (170)
T 1z08_A 75 --YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS--IQEAESYAESVGAKHYHT 148 (170)
T ss_dssp --SSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSC--HHHHHHHHHHTTCEEEEE
T ss_pred --HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccC--HHHHHHHHHHcCCeEEEe
Confidence 2235899999999876422122 233333432 468999999999997542211 122333334444555554
No 106
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.68 E-value=1.8e-16 Score=141.73 Aligned_cols=133 Identities=19% Similarity=0.272 Sum_probs=86.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccc-cc----------------------------cccCCCCceEEEEEEE---eCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-VV----------------------------RTSDKPGLTQTINFFK---LGT 138 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~-~~----------------------------~vs~~~gtT~~~~~~~---~~~ 138 (243)
..++|+++|.+|+|||||+|+|+.... .. .....+|+|.+..... .+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 457999999999999999999986410 00 0011467777764332 367
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-------CChhhHHHHHHHHhcCC-cEEEEe
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQT-KYQVVL 210 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~~~~~~~~~~~l~~~~~-p~i~v~ 210 (243)
.+.+|||||+.+ +..........+|++++|+|+..+ +..+..+.+..+...+. |+++|+
T Consensus 85 ~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivvi 151 (435)
T 1jny_A 85 FFTIIDAPGHRD-------------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAV 151 (435)
T ss_dssp EEEECCCSSSTT-------------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEE
T ss_pred EEEEEECCCcHH-------------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEE
Confidence 899999999854 222233344569999999999876 55566677777777776 599999
Q ss_pred ecCCCCC----hHHHHHHHHHHHHHHhhCC
Q 026112 211 TKTDTVF----PIDVARRAMQIEESLKANN 236 (243)
Q Consensus 211 nK~D~~~----~~~~~~~~~~l~~~l~~~~ 236 (243)
||+|+.. +.......+.+++.+...+
T Consensus 152 NK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~ 181 (435)
T 1jny_A 152 NKMDLTEPPYDEKRYKEIVDQVSKFMRSYG 181 (435)
T ss_dssp ECGGGSSSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred EcccCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 9999986 3334555667777766654
No 107
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.68 E-value=5e-16 Score=135.64 Aligned_cols=150 Identities=21% Similarity=0.276 Sum_probs=86.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCC------CCceEEEEEEE----e-C--CcEEEEeCCCCCCCccch---
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK------PGLTQTINFFK----L-G--TKLCLVDLPGYGFAYAKE--- 155 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~------~gtT~~~~~~~----~-~--~~~~liDTpG~~~~~~~~--- 155 (243)
.++|+++|.+|+|||||+|+|++.. ....... ...|....... . + ..+.+|||||+++.....
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~-~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTD-LYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCC-C---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCC-CCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 4689999999999999999998762 1211111 11232222211 1 2 268999999996542211
Q ss_pred -HHHHHHHHHHHHHHhcccC----------ccEEEEEEeC-CCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHH
Q 026112 156 -EVKDAWEELVKEYVSTRVS----------LKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 223 (243)
Q Consensus 156 -~~~~~~~~~~~~~~~~~~~----------~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~ 223 (243)
.+...+......|+..... +|+++|++++ .+++...+..+++.+. .++|+++|+||+|+....++..
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~ev~~ 194 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERER 194 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHHHHHH
Confidence 1111112222244443222 3578888875 5677777777777664 4789999999999999887777
Q ss_pred HHHHHHHHHhhCCCccccCC
Q 026112 224 RAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 224 ~~~~l~~~l~~~~~~~~pi~ 243 (243)
....+.+.+...+..+++++
T Consensus 195 ~k~~i~~~~~~~~i~~~~~S 214 (361)
T 2qag_A 195 LKKRILDEIEEHNIKIYHLP 214 (361)
T ss_dssp HHHHHHHHTTCC-CCSCCCC
T ss_pred HHHHHHHHHHHCCCCEEeCC
Confidence 66778888887777777654
No 108
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.68 E-value=9.2e-17 Score=126.27 Aligned_cols=136 Identities=13% Similarity=0.147 Sum_probs=81.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++.. ......+.++.+. .....+ ..+.+|||||... +....
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~ 76 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK--FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER----------FRSVT 76 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS--CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHH
Confidence 35799999999999999999999873 2222333334333 222223 4789999999643 12222
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH---hcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCcccc
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~p 241 (243)
..+ ...+|++++|+|++.+.+... ..++..+. ..+.|+++|+||+|+....... .....+.....+..+++
T Consensus 77 ~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (186)
T 2bme_A 77 RSY---YRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVT--FLEASRFAQENELMFLE 151 (186)
T ss_dssp HTT---STTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHHTTCEEEE
T ss_pred HHH---HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC--HHHHHHHHHHcCCEEEE
Confidence 233 344999999999876422222 23443333 2468999999999996432211 12233334444555555
Q ss_pred CC
Q 026112 242 VV 243 (243)
Q Consensus 242 i~ 243 (243)
++
T Consensus 152 ~S 153 (186)
T 2bme_A 152 TS 153 (186)
T ss_dssp CC
T ss_pred ec
Confidence 43
No 109
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.68 E-value=6.9e-17 Score=127.84 Aligned_cols=114 Identities=15% Similarity=0.180 Sum_probs=73.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
..++|+++|.+|+|||||+|+|++........+..+.+.. .+...+..+.+|||||... +......++.
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~ 89 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGNVTIKLWDIGGQPR----------FRSMWERYCR 89 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETTEEEEEEEECCSHH----------HHTTHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEEeCCEEEEEEECCCCHh----------HHHHHHHHHc
Confidence 4579999999999999999999987321122233332221 1222367899999999632 2223334443
Q ss_pred cccCccEEEEEEeCCCCCChhh-HHHH-HHHHh---cCCcEEEEeecCCCCCh
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRD-HELI-SLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~-~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
.+|++++|+|++....... ..++ ..+.. .+.|+++|+||+|+...
T Consensus 90 ---~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 90 ---GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp ---TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred ---cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 3899999999876422221 1223 33332 47899999999999864
No 110
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.68 E-value=7.5e-17 Score=125.61 Aligned_cols=112 Identities=18% Similarity=0.164 Sum_probs=71.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEeC---CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|+|||||+|+|++.. ......+.++.+... ...+ ..+.+|||||.... .....
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~ 81 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----------RSLIP 81 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC--CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHH----------HHHHH
Confidence 3699999999999999999999873 222333444444322 2222 37899999996431 11222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChh-hHHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
.++.. +|++++|+|++.+.+.. ...++..+.. .+.|+++|+||+|+..+
T Consensus 82 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 82 SYIRD---STVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134 (179)
T ss_dssp HHHHT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred HHhcC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 33332 89999999987532211 1233433332 36899999999999754
No 111
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=9.9e-17 Score=126.89 Aligned_cols=113 Identities=21% Similarity=0.174 Sum_probs=74.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+|+|++........+..+++........ +..+.+|||||..... .....+
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 84 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR----------TLTPSY 84 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC----------CSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhh----------hhhHHH
Confidence 469999999999999999999987422223334444444433332 3568999999964311 122233
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~ 217 (243)
+. .+|++++|+|++.+..... ..++..+.. .+.|+++|+||+|+..
T Consensus 85 ~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 85 YR---GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp HT---TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred hc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 33 3899999999876422222 244444543 3689999999999954
No 112
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.68 E-value=2.3e-16 Score=120.99 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=69.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
++|+++|.+|+|||||+|+|++.. ......+++.+. ..... ...+.+|||||..... .....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~~~ 70 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH---FVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----------AMRDQ 70 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC----------HHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc---CccccCCccceEEEEEEEECCEEEEEEEEECCCchhhh----------HHHHH
Confidence 589999999999999999999873 222333333222 11122 2357899999975411 12222
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|.+....... ..++..+.. .+.|+++|+||+|+...
T Consensus 71 ~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 71 YMRT---GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR 123 (166)
T ss_dssp HHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhc
Confidence 3332 899999999875422111 233443332 26899999999999763
No 113
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=126.24 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=70.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++... . ....+..+.+. .....+ ..+.+|||||... +..+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~ 95 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAF-S-ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER----------FRTIT 95 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEETTEEEEEEEECCTTCGG----------GHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCC-C-CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHh----------HHHHH
Confidence 357999999999999999999998731 1 11111112222 222222 4789999999642 12233
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
..++.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 96 ~~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 96 QSYYRS---ANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp HHHHTT---CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 444443 899999999875422111 244444443 3589999999999975
No 114
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.67 E-value=1.1e-16 Score=128.33 Aligned_cols=136 Identities=18% Similarity=0.095 Sum_probs=80.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE--EEEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~--~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++... .....+.++.+ ......+ ..+.+|||||...... ..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~ 74 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTY--TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT----------IT 74 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCC--CTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTC----------CC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHH----------HH
Confidence 347999999999999999999998742 12222333322 2222222 3799999999653211 11
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCcccc
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~p 241 (243)
..++ ..+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+....... .+..++.....+..+++
T Consensus 75 ~~~~---~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~ 149 (206)
T 2bcg_Y 75 SSYY---RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVE--YDVAKEFADANKMPFLE 149 (206)
T ss_dssp GGGG---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC--HHHHHHHHHHTTCCEEE
T ss_pred HHhc---cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC--HHHHHHHHHHcCCeEEE
Confidence 1222 33899999999876422222 234444433 358999999999997643211 11223333344555555
Q ss_pred CC
Q 026112 242 VV 243 (243)
Q Consensus 242 i~ 243 (243)
++
T Consensus 150 ~S 151 (206)
T 2bcg_Y 150 TS 151 (206)
T ss_dssp CC
T ss_pred Ee
Confidence 53
No 115
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.67 E-value=6.9e-17 Score=128.06 Aligned_cols=114 Identities=17% Similarity=0.119 Sum_probs=71.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++........+..+++........+ ..+.+|||||..... .+...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~ 89 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFR----------SITRS 89 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTS----------CCCHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhh----------hhHHH
Confidence 35699999999999999999999873211122223333333333333 378999999964311 11223
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
++. .+|++++|+|++...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 90 ~~~---~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 90 YYR---GAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp HHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred Hhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 333 3899999999876422222 234444443 2789999999999964
No 116
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.67 E-value=6.4e-18 Score=156.28 Aligned_cols=134 Identities=16% Similarity=0.136 Sum_probs=77.9
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccc------------------------------cCCCCceEEEEEEE---e
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT------------------------------SDKPGLTQTINFFK---L 136 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~v------------------------------s~~~gtT~~~~~~~---~ 136 (243)
...++|+++|.+|+|||||+|+|++... ... ...+|+|.+..... .
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~-~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELG-EINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHH-CC-------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcC-CcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4567899999999999999999975311 111 11457788765443 2
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-----C--ChhhHHHHHHHHhcCCc-EEE
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-----V--KPRDHELISLMERSQTK-YQV 208 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-----~--~~~~~~~~~~l~~~~~p-~i~ 208 (243)
+..+.||||||+.+.... .......+|++++|+|+..+ + ..+..+.+..+...++| +++
T Consensus 254 ~~~i~iiDTPGh~~f~~~-------------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIv 320 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISG-------------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV 320 (592)
T ss_dssp -----CCEEESSSEEEEE-------------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEE
T ss_pred CeEEEEEECCChHHHHHH-------------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEE
Confidence 578999999998642111 11112238999999998764 3 66777888888888887 999
Q ss_pred EeecCCCCC--hHHHHHHHHHHHHHH-hhCCC
Q 026112 209 VLTKTDTVF--PIDVARRAMQIEESL-KANNS 237 (243)
Q Consensus 209 v~nK~D~~~--~~~~~~~~~~l~~~l-~~~~~ 237 (243)
|+||+|+.. +.........+.+.+ ...+.
T Consensus 321 viNKiDl~~~~~~~~~~i~~el~~~l~~~~g~ 352 (592)
T 3mca_A 321 SVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGF 352 (592)
T ss_dssp EEECGGGGTTCHHHHHHHHHHHHHHHTTTSCC
T ss_pred EEeccccccccHHHHHHHHHHHHHHHHHhhCC
Confidence 999999976 445566667777777 44443
No 117
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.67 E-value=1e-16 Score=125.84 Aligned_cols=112 Identities=14% Similarity=0.146 Sum_probs=69.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++.. ....+.+++.+. ..... + ..+.+|||||..... .+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~ 83 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI---FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS----------AMR 83 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGC----------SSH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhH----------HHH
Confidence 45799999999999999999999873 223333333222 12222 2 246679999964311 112
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHH----HhcCCcEEEEeecCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l----~~~~~p~i~v~nK~D~~~~ 218 (243)
..++.. +|++++|+|.+.+.+... ..++..+ ...+.|+++|+||+|+...
T Consensus 84 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 138 (183)
T 3kkq_A 84 EQYMRT---GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 138 (183)
T ss_dssp HHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTT
T ss_pred HHHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhc
Confidence 223322 899999999876421111 2333333 2347899999999998753
No 118
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.67 E-value=4.2e-17 Score=127.29 Aligned_cols=113 Identities=19% Similarity=0.176 Sum_probs=73.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++.. ......++++.+... ... + ..+.+|||||...... ..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~ 75 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT--FSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRT----------IT 75 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSS----------CC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC--CCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhh----------hH
Confidence 45799999999999999999999873 224444555554432 222 3 4689999999543111 11
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc--CCcEEEEeecCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~p~i~v~nK~D~~~~ 218 (243)
..++ ..+|++++|+|++.+.+... ..++..+... +.|+++|+||+|+...
T Consensus 76 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 76 STYY---RGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPER 128 (181)
T ss_dssp GGGG---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred HHHh---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchh
Confidence 1222 33899999999886422222 2344444333 5899999999998754
No 119
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.67 E-value=4.3e-16 Score=125.98 Aligned_cols=115 Identities=14% Similarity=0.076 Sum_probs=65.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
...+|+++|.+|+|||||+|+|++.. ....+.+++.+.. .... ...+.+|||||... +..+.
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~ 99 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGA---FPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD----------YDRLR 99 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEEEEEETTEEEEEEEEEC--------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC---CCCCCCCccceeEEEEEEECCEEEEEEEEECCCchh----------hhHHH
Confidence 34799999999999999999999873 1222333332221 1122 23688999999643 12222
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHhc--CCcEEEEeecCCCCChHHH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~p~i~v~nK~D~~~~~~~ 221 (243)
..++. .+|++++|+|++.+.+.... .++..+... +.|+++|+||+|+......
T Consensus 100 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 156 (214)
T 2j1l_A 100 PLFYP---DASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSL 156 (214)
T ss_dssp --------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHH
T ss_pred HHHhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchh
Confidence 33333 38999999998764222221 344455432 6899999999999876543
No 120
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=2.7e-16 Score=124.88 Aligned_cols=114 Identities=14% Similarity=0.008 Sum_probs=70.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
..++|+++|.+|+|||||+|+|++........+..+.+........ ...+.+|||||.... ..+...+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~ 76 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF----------PAMQRLS 76 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSC----------HHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHh----------HHHHHHh
Confidence 4679999999999999999999986321111222222221111111 346899999996431 1222233
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-----cCCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-----~~~p~i~v~nK~D~~~ 217 (243)
+.. +|++++|+|++....... ..++..+.. .+.|+++|+||+|+..
T Consensus 77 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 77 ISK---GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp HHH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred hcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 333 899999999875321111 233333332 2689999999999975
No 121
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.67 E-value=1.2e-16 Score=128.32 Aligned_cols=114 Identities=16% Similarity=0.009 Sum_probs=75.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCC--cEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGT--KLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||++++++.. ....+.+++.+..... .+. .+.+|||||.... ..+.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~ 95 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY----------DRLR 95 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSC---CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGG----------TTTG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCC---CCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhh----------HHHH
Confidence 45799999999999999999999872 3444555555443221 233 4559999997431 1111
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHhc--CCcEEEEeecCCCCChHH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~p~i~v~nK~D~~~~~~ 220 (243)
..+ ...+|++++|+|++.+.+.... .++..+... +.|+++|+||+|+.....
T Consensus 96 ~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 151 (204)
T 4gzl_A 96 PLS---YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 151 (204)
T ss_dssp GGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHH
T ss_pred HHH---hccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchh
Confidence 122 2348999999998864333222 455566554 799999999999986654
No 122
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.67 E-value=1.2e-16 Score=124.63 Aligned_cols=114 Identities=17% Similarity=0.201 Sum_probs=71.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe-C---CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~-~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
..++|+++|.+|+|||||+|+|++........+..+.......... + ..+.+|||||..... ....
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----------~~~~ 74 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG----------KMLD 74 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC----------TTHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc----------chhh
Confidence 3479999999999999999999987321112222222222222222 2 579999999965321 1222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc-----CCc-EEEEeecCCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS-----QTK-YQVVLTKTDTVF 217 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~-----~~p-~i~v~nK~D~~~ 217 (243)
.++. .+|++++|+|++.+.+... ..++..+... ..| +++|+||+|+..
T Consensus 75 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 75 KYIY---GAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp HHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred HHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 3333 3899999999876422222 2344444431 556 899999999965
No 123
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.67 E-value=4.3e-17 Score=128.83 Aligned_cols=113 Identities=20% Similarity=0.168 Sum_probs=73.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
..++|+++|.+|+|||||+|+|++.. .....+..+.+... ....+..+.+|||||...... ....+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~t~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~----------~~~~~-- 86 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGD-VVTTVPTVGVNLET-LQYKNISFEVWDLGGQTGVRP----------YWRCY-- 86 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSC-CEEECSSTTCCEEE-EEETTEEEEEEEECCSSSSCC----------CCSSS--
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCC-CCCcCCCCceEEEE-EEECCEEEEEEECCCCHhHHH----------HHHHH--
Confidence 45799999999999999999998773 23333333332221 112367899999999754211 11111
Q ss_pred cccCccEEEEEEeCCCCCChhh--HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRD--HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
...+|++++|+|++.+.+... ..+...+.. .+.|+++|+||+|+...
T Consensus 87 -~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 87 -FSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp -STTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred -hhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 234899999999886533222 223333332 36899999999999865
No 124
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.67 E-value=2.9e-16 Score=124.02 Aligned_cols=110 Identities=15% Similarity=0.129 Sum_probs=67.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|+|||||+|+|++.. ....+.+++.+.. .... + ..+.+|||||... +.....
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~ 87 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE----------YSAMRD 87 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCC---CccccCCccceEEEEEEEECCEEEEEEEEECCChHH----------HHHHHH
Confidence 4699999999999999999999873 2233444443322 1222 2 3588999999642 122233
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~ 217 (243)
.++ ..+|++++|+|........+ ..++..+.. .+.|+++|+||+|+..
T Consensus 88 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 88 QYM---RTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp --C---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred Hhh---CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 333 34899999999876422222 233333332 3689999999999875
No 125
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.66 E-value=1.2e-16 Score=127.04 Aligned_cols=114 Identities=16% Similarity=0.172 Sum_probs=69.0
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
...++|+++|.+|+|||||+|+|++.. .....+..+... ......+..+.+|||||.... ......++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~ 94 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVEYKNICFTVWDVGGQDKI----------RPLWRHYF 94 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSC-CEEEEEETTEEE-EEEEETTEEEEEEECC---------------CTTHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCC-ccccCCcCceeE-EEEEECCEEEEEEECCCCHhH----------HHHHHHHh
Confidence 456899999999999999999998773 222222122111 111123568999999997431 11222333
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHH-Hh---cCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~~---~~~p~i~v~nK~D~~~~ 218 (243)
.. +|++++|+|++.+.+... ..++..+ .. .+.|+++|+||+|+...
T Consensus 95 ~~---~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 95 QN---TQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp HT---CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred cc---CCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 33 899999999876522221 1233322 21 37899999999999764
No 126
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.66 E-value=2.1e-16 Score=123.98 Aligned_cols=112 Identities=15% Similarity=-0.019 Sum_probs=72.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---EEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~---~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|+|||||+|+|++... ...+.+++.+. ..... ...+.+|||||.... ..+..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 71 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY----------DRLRP 71 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC---CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGG----------TTTGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC---CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhH----------HHHHH
Confidence 46899999999999999999998631 22333333222 11111 235779999997431 11111
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHhc--CCcEEEEeecCCCCChH
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~p~i~v~nK~D~~~~~ 219 (243)
.+ ...+|++++|+|++.+.+.... .++..+... +.|+++|+||+|+....
T Consensus 72 ~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 125 (186)
T 1mh1_A 72 LS---YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125 (186)
T ss_dssp GG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH
T ss_pred Hh---ccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccc
Confidence 22 2348999999998764222222 355555544 78999999999997654
No 127
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.66 E-value=2e-16 Score=126.44 Aligned_cols=136 Identities=18% Similarity=0.182 Sum_probs=57.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceE-EE--EEEEeC-----CcEEEEeCCCCCCCccchHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI--NFFKLG-----TKLCLVDLPGYGFAYAKEEVKDAWEE 163 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~-~~--~~~~~~-----~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (243)
.++|+++|.+|+|||||+|+|++. .......+.+|+. +. .....+ ..+.+|||||... +..
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~ 88 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK-GSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL----------YKE 88 (208)
T ss_dssp EEEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTTHH----------HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC-CCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHH----------HHH
Confidence 469999999999999999999987 2222334444442 22 222222 3689999999631 222
Q ss_pred HHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh------cCCcEEEEeecCCCCC-hHHHHHHHHHHHHHHhhC
Q 026112 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVF-PIDVARRAMQIEESLKAN 235 (243)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~------~~~p~i~v~nK~D~~~-~~~~~~~~~~l~~~l~~~ 235 (243)
.... ....+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+.. .... ..+.+++.....
T Consensus 89 ~~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v--~~~~~~~~~~~~ 163 (208)
T 2yc2_C 89 QISQ---YWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQV--RLDMAQDWATTN 163 (208)
T ss_dssp HHST---TCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CC--CHHHHHHHHHHT
T ss_pred HHHH---HHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccC--CHHHHHHHHHHc
Confidence 2222 2345899999999876432122 344555543 4789999999999976 3221 112334444445
Q ss_pred CCccccCC
Q 026112 236 NSLVQPVV 243 (243)
Q Consensus 236 ~~~~~pi~ 243 (243)
+..+++++
T Consensus 164 ~~~~~~~S 171 (208)
T 2yc2_C 164 TLDFFDVS 171 (208)
T ss_dssp TCEEEECC
T ss_pred CCEEEEec
Confidence 55555553
No 128
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=2.8e-16 Score=124.61 Aligned_cols=113 Identities=12% Similarity=0.018 Sum_probs=74.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++.. ....+.+|+.+.. .... + ..+.+|||||..... .+.
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~ 83 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDA---FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD----------RLR 83 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSS---CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSST----------TTG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchh----------HHH
Confidence 45699999999999999999999873 2233334433221 1122 2 468899999975421 111
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCChH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~~~ 219 (243)
..+ ...+|++++|+|++.+.+... ..++..+... +.|+++|+||+|+....
T Consensus 84 ~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (194)
T 2atx_A 84 PLS---YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP 138 (194)
T ss_dssp GGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCH
T ss_pred HHh---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccc
Confidence 122 234899999999876422222 2455556554 78999999999998653
No 129
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=8.6e-17 Score=127.50 Aligned_cols=115 Identities=16% Similarity=0.127 Sum_probs=76.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++........+..+++........ +..+.+|||||.. .+..+...
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 91 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE----------RYRTITTA 91 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHH----------HCHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH----------HHHHHHHH
Confidence 4579999999999999999999987322222233344444433332 4469999999942 12233444
Q ss_pred HHhcccCccEEEEEEeCCCCCChh-hHHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|++...... ...++..+.. .+.|+++|+||+|+...
T Consensus 92 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 92 YYRG---AMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143 (191)
T ss_dssp HHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 4443 89999999987532211 2345555544 46899999999998643
No 130
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.66 E-value=1.4e-15 Score=143.02 Aligned_cols=126 Identities=20% Similarity=0.215 Sum_probs=92.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceE-----------------------------------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ----------------------------------------- 129 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~----------------------------------------- 129 (243)
..|+|+++|.+|+|||||+|+|+|.. ....+.. .+|+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~-~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRD-FLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSC-CSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC-ccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 57899999999999999999999973 2111111 1121
Q ss_pred ----------EE---EE-EEeCCcEEEEeCCCCCCCc---cchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh
Q 026112 130 ----------TI---NF-FKLGTKLCLVDLPGYGFAY---AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192 (243)
Q Consensus 130 ----------~~---~~-~~~~~~~~liDTpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~ 192 (243)
+. .+ .+....+.++||||+.... ....+...+..++..|+. ..+|++++|+|++.++...+
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~--~~aDlIL~VVDAs~~~~~~d 205 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANSD 205 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT--STTEEEEEEEETTSCSSSCH
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh--cCCcEEEEEEcCCCCcchhH
Confidence 11 11 1124468999999998632 133445667778888876 45899999999998777777
Q ss_pred H-HHHHHHHhcCCcEEEEeecCCCCChHH
Q 026112 193 H-ELISLMERSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 193 ~-~~~~~l~~~~~p~i~v~nK~D~~~~~~ 220 (243)
. .+++.+...+.|+++|+||+|++....
T Consensus 206 ~l~ll~~L~~~g~pvIlVlNKiDlv~~~~ 234 (772)
T 3zvr_A 206 ALKIAKEVDPQGQRTIGVITKLDLMDEGT 234 (772)
T ss_dssp HHHHHHHHCTTCSSEEEEEECTTSSCTTC
T ss_pred HHHHHHHHHhcCCCEEEEEeCcccCCcch
Confidence 6 788888888999999999999987543
No 131
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.66 E-value=2.2e-16 Score=123.31 Aligned_cols=115 Identities=12% Similarity=0.075 Sum_probs=67.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
..++|+++|.+|+|||||+|+|++........+..+.+........ ...+.+|||||... +.....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~ 76 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER----------FQSLGV 76 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC--------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH----------hhhhhH
Confidence 4579999999999999999999987321222222222222222222 23689999999532 112222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-------cCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-------~~~p~i~v~nK~D~~~~ 218 (243)
. ....+|++++|+|++.+..... ..++..+.. .+.|+++|+||+|+...
T Consensus 77 ~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 133 (182)
T 1ky3_A 77 A---FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES 133 (182)
T ss_dssp C---CSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred H---HhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc
Confidence 2 2345899999999876422222 233333322 46899999999999643
No 132
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.66 E-value=2.6e-16 Score=122.89 Aligned_cols=107 Identities=9% Similarity=0.018 Sum_probs=68.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
...+|+++|.+|+|||||+|+|++.. .....+..+.......... ...+.+|||||... . .+
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~----~~ 69 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGS-YQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----------A----KF 69 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSC-CCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----------H----HH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC-CCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----------h----HH
Confidence 34799999999999999999999873 2222333332221111111 24578999999743 1 12
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh------cCCcEEEEeecCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTV 216 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~------~~~p~i~v~nK~D~~ 216 (243)
+.. +|++++|+|.+.+.+... ..+++++.. .+.|+++|+||+|+.
T Consensus 70 ~~~---~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 70 SGW---ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp HHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred HHh---CCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 222 899999999876422222 223333332 368999999999994
No 133
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.66 E-value=7.7e-17 Score=128.89 Aligned_cols=113 Identities=14% Similarity=0.075 Sum_probs=71.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EE---eCCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK---LGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
...++|+++|.+|+|||||+|+|++... ...+.+++..... .. .+..+.+|||||...... +
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~ 88 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEF---SEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI----------L 88 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCC---CSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCC----------C
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCC---CCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHH----------H
Confidence 4567999999999999999999998732 2333333332211 11 245678999999654211 1
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
...++ ..+|++++|+|++...+... ..++..+.. .+.|+++|+||+|+...
T Consensus 89 ~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 3oes_A 89 PYSFI---IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144 (201)
T ss_dssp CGGGT---TTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGG
T ss_pred HHHHH---hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccc
Confidence 11222 33899999999875421111 233343432 26899999999998754
No 134
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=2.8e-16 Score=126.13 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=72.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++.. ......+..+.+.. ....+ ..+.+|||||... +..+.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~ 92 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGL--FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER----------FRSIT 92 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS--CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC--CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHH
Confidence 34799999999999999999999873 22222233333332 22222 3689999999632 12222
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
..++ ..+|++++|+|++...+... ..++..+.. .+.|+++|+||+|+...
T Consensus 93 ~~~~---~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 93 QSYY---RSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146 (201)
T ss_dssp GGGS---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHH---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 2333 34999999999876422211 234444433 36899999999999743
No 135
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.66 E-value=3.2e-16 Score=125.31 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=72.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE-EEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~-~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.++|+++|.+|+|||||+|+|++... . ....+.++.+. ..... ...+.+|||||.... ..+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~ 92 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQF-P-EVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY----------DRLRPL 92 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-C-SSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGG----------TTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC-C-cccCCcccceEEEEEEECCEEEEEEEEECCCchhH----------HHHHHH
Confidence 46899999999999999999998732 1 11122222221 11222 236889999996431 111112
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCChHH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~~~~ 220 (243)
+ ...+|++++|+|.+....... ..++..+... +.|+++|+||+|+.....
T Consensus 93 ~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 146 (201)
T 2gco_A 93 S---YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146 (201)
T ss_dssp G---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHH
T ss_pred h---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCcc
Confidence 2 234899999999876322222 3455555554 799999999999987643
No 136
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.65 E-value=4e-16 Score=120.59 Aligned_cols=135 Identities=13% Similarity=0.042 Sum_probs=72.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|+|||||+|+|++... ..... +.++.+... ... ...+.+|||||...... .+..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~ 70 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQG-DHAHE-MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG---------WLQD 70 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEETTEEEEEEEECCCCC-----------------C
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccC-ccccc-CCCcCCeeeEEEEECCeEEEEEEEECCCccccch---------hhhh
Confidence 36899999999999999999987631 22222 222222211 112 34678999999754110 0111
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCcccc
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~p 241 (243)
.++.. +|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+....... .+...+.....+..+++
T Consensus 71 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~ 145 (169)
T 3q85_A 71 HCLQT---GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS--LEEGRHLAGTLSCKHIE 145 (169)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSC--HHHHHHHHHHTTCEEEE
T ss_pred hhhcc---CCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCC--HHHHHHHHHHcCCcEEE
Confidence 22222 899999999876321111 233333332 268999999999997432221 12233333444555555
Q ss_pred C
Q 026112 242 V 242 (243)
Q Consensus 242 i 242 (243)
+
T Consensus 146 ~ 146 (169)
T 3q85_A 146 T 146 (169)
T ss_dssp C
T ss_pred e
Confidence 4
No 137
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.65 E-value=9.2e-17 Score=130.66 Aligned_cols=138 Identities=16% Similarity=0.154 Sum_probs=78.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++........+..+++........+ ..+.+|||||..... .+...
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~ 81 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYR----------AITSA 81 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTT----------CCCGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchh----------hhHHH
Confidence 35799999999999999999999873211122222322222222233 478999999964321 11112
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi~ 243 (243)
++ ..+|++++|+|++.+.+... ..++..+... +.|+++|+||+|+....... .+.+.+.....+..+++++
T Consensus 82 ~~---~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~~~~~~~~~~S 156 (223)
T 3cpj_B 82 YY---RGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVP--TEESKTFAQENQLLFTETS 156 (223)
T ss_dssp GT---TTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSC--HHHHHHHHHHTTCEEEECC
T ss_pred Hh---ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccC--HHHHHHHHHHcCCEEEEEe
Confidence 22 34899999999876422222 2344444433 68999999999997532211 1122333344455555553
No 138
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.65 E-value=2.8e-16 Score=124.76 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=72.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
..+|+++|.+|+|||||+|+|++. ......+..+.+.. .+...+..+.++||||..... .+...++
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~~-- 88 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND-RLATLQPTWHPTSE-ELAIGNIKFTTFDLGGHIQAR----------RLWKDYF-- 88 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS-CCCCCCCCCSCEEE-EEEETTEEEEEEECCCSGGGT----------TSGGGGC--
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC-CCCccccCCCCCeE-EEEECCEEEEEEECCCCHHHH----------HHHHHHH--
Confidence 469999999999999999999987 33444444444322 222236789999999975311 1111222
Q ss_pred ccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCC
Q 026112 172 RVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~ 217 (243)
..+|++++|+|++.+.+... ..++..+. ..+.|+++|+||+|+..
T Consensus 89 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 89 -PEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp -TTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred -hcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 34899999999886532222 22333332 24789999999999975
No 139
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=7.6e-16 Score=122.50 Aligned_cols=111 Identities=14% Similarity=0.073 Sum_probs=70.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE-E-EEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I-NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~-~-~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++... ...+.+++.+ . ..... +..+.+|||||... . ...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---~--------~~~ 92 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRF---IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED---T--------IQR 92 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCC---CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC---C--------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC---CcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc---c--------cch
Confidence 457999999999999999999998732 2222222221 1 11222 34688999999754 1 112
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
..++.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+...
T Consensus 93 ~~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 93 EGHMRW---GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 147 (196)
T ss_dssp HHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred hhhhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccc
Confidence 223332 899999999876322111 233333332 47899999999999753
No 140
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.65 E-value=2.9e-16 Score=137.03 Aligned_cols=124 Identities=23% Similarity=0.304 Sum_probs=81.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceE-----------------------------------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ----------------------------------------- 129 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~----------------------------------------- 129 (243)
..|.|+++|.+|||||||+|+|++.. ....+.. .+|+
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~-~lp~~~~-~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKD-FLPRGSG-IVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDE 110 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSC-CSCCCSS-SCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC-cCCCCCC-cccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHH
Confidence 56899999999999999999999963 1111110 0110
Q ss_pred -------------E---EEEE-EeCCcEEEEeCCCCCCCcc---chHHHHHHHHHHHHHHhcccCccEEEEEEeCCC-CC
Q 026112 130 -------------T---INFF-KLGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-GV 188 (243)
Q Consensus 130 -------------~---~~~~-~~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~-~~ 188 (243)
+ +... .....+.+|||||+..... .......+..+...|+.. +|++++|+|+.. ..
T Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~---~d~iilvv~~~~~~~ 187 (360)
T 3t34_A 111 TDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEK---PNCIILAISPANQDL 187 (360)
T ss_dssp HHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHS---SSEEEEEEEETTSCG
T ss_pred HHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhc---CCeEEEEeecccCCc
Confidence 0 0111 1145799999999876421 233445566677777665 899999998643 22
Q ss_pred -ChhhHHHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 189 -KPRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 189 -~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
......+++.+...+.|+++|+||+|+..+.
T Consensus 188 ~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 188 ATSDAIKISREVDPSGDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp GGCHHHHHHHHSCTTCTTEEEEEECGGGCCTT
T ss_pred CCHHHHHHHHHhcccCCCEEEEEeCCccCCCc
Confidence 2223455555556678999999999998654
No 141
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.65 E-value=3.4e-16 Score=125.20 Aligned_cols=115 Identities=15% Similarity=0.120 Sum_probs=68.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++........+..+.+........+ ..+.+|||||... +......
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~ 93 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER----------FRSVTRS 93 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHH----------HSCCCHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHh----------HHHHHHH
Confidence 35799999999999999999999873211111222222222222222 4789999999521 1112223
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
++. .+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...
T Consensus 94 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 145 (200)
T 2o52_A 94 YYR---GAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145 (200)
T ss_dssp HHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGG
T ss_pred Hhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 333 3899999999876422222 234444432 36899999999999643
No 142
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.65 E-value=4.6e-16 Score=141.94 Aligned_cols=129 Identities=22% Similarity=0.257 Sum_probs=89.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccc--------------ccc------CCCCceEE---EEEEEeCCcEEEEeCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV--------------RTS------DKPGLTQT---INFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~--------------~vs------~~~gtT~~---~~~~~~~~~~~liDTpG~ 148 (243)
.++|+|+|.+|+|||||+|+|+...... .+. ..+|+|.. ..+...+..+.+|||||+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 4699999999999999999997321100 000 01233332 233334678999999998
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHH
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 228 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l 228 (243)
.+.. .....++ ..+|++++|+|+..+.......++..+...++|+++|+||+|+.... ..+..+.+
T Consensus 93 ~df~----------~~~~~~l---~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~-~~~~l~ei 158 (528)
T 3tr5_A 93 ADFT----------EDTYRTL---TAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRP-SIELLDEI 158 (528)
T ss_dssp TTCC----------HHHHHGG---GGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSC-HHHHHHHH
T ss_pred hhHH----------HHHHHHH---HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc-HHHHHHHH
Confidence 6521 1122233 34999999999999888888888888888899999999999997543 34445666
Q ss_pred HHHHhh
Q 026112 229 EESLKA 234 (243)
Q Consensus 229 ~~~l~~ 234 (243)
++.++.
T Consensus 159 ~~~l~~ 164 (528)
T 3tr5_A 159 ESILRI 164 (528)
T ss_dssp HHHHCC
T ss_pred HHhhCC
Confidence 766654
No 143
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.64 E-value=2.4e-16 Score=126.02 Aligned_cols=112 Identities=15% Similarity=0.078 Sum_probs=70.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++... .....+.++.+.. .... + ..+.+|||||..... .+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~ 74 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQ----------SLG 74 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCC--CSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGS----------CSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH----------HhH
Confidence 457999999999999999999998732 1222233333332 2222 2 368999999964311 111
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-------cCCcEEEEeecCCCCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-------~~~p~i~v~nK~D~~~ 217 (243)
..++ ..+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+..
T Consensus 75 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (207)
T 1vg8_A 75 VAFY---RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131 (207)
T ss_dssp CGGG---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred HHHH---hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence 1222 34899999999876422222 233333321 3689999999999974
No 144
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=3.3e-16 Score=125.81 Aligned_cols=113 Identities=11% Similarity=-0.000 Sum_probs=70.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceE-EE-EEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI-NFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~-~~-~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|+|||||+|+|++... . ..+.+++. .. .....+ ..+.+|||||..... .+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~ 91 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEF-P--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD----------RLRP 91 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-C---------CCEEEEEEEETTEEEEEEEEECTTCTTCT----------TTGG
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCC-C--CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHH----------HHHH
Confidence 36999999999999999999998732 2 22222221 11 112222 468899999975421 1111
Q ss_pred HHHhcccCccEEEEEEeCCCCCC--hhhHHHHHHHHhc--CCcEEEEeecCCCCChHH
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMERS--QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~--~~~~~~~~~l~~~--~~p~i~v~nK~D~~~~~~ 220 (243)
.+ ...+|++++|+|.+.... .....++..+... +.|+++|+||+|+.....
T Consensus 92 ~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 146 (207)
T 2fv8_A 92 LS---YPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 146 (207)
T ss_dssp GG---CTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHH
T ss_pred hh---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcccc
Confidence 12 234899999999875321 1213455555554 789999999999976543
No 145
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.64 E-value=7.1e-17 Score=126.71 Aligned_cols=112 Identities=18% Similarity=0.216 Sum_probs=53.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|+|||||+|+|++.. ......+.++.+... ... + ..+.+|||||... +.....
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~ 75 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDA--FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTITT 75 (183)
T ss_dssp EEEEEEECCCCC------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh----------hhhhHH
Confidence 4799999999999999999999763 222222333444322 222 2 5789999999642 111222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
.+ ...+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...
T Consensus 76 ~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (183)
T 2fu5_C 76 AY---YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128 (183)
T ss_dssp TT---TTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred HH---HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCcc
Confidence 22 234899999999886422111 234444443 26899999999999753
No 146
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.64 E-value=4.2e-16 Score=124.36 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=71.0
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---EEEEeC--CcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~---~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
...++|+++|.+|||||||+|+|++... .....++++.+. .+...+ ..+.+|||||.... . ..+
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~---~------~~~ 89 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQG--DSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA---G------GWL 89 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEEC--CGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGG---G------HHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccC--CccCCCCcccceEEEEEEECCEEEEEEEEecCCCccc---h------hhh
Confidence 3457999999999999999999986522 122233333322 111122 35778999997431 1 012
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChh-hHHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
...++.. +|++++|+|.+...+.. -..++..+.. .+.|+++|+||+|+...
T Consensus 90 ~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 145 (195)
T 3cbq_A 90 RDHCLQT---GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 145 (195)
T ss_dssp HHHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTT
T ss_pred HHHhhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcccc
Confidence 2233332 89999999987542211 1234444433 36899999999999753
No 147
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.64 E-value=8.8e-16 Score=123.95 Aligned_cols=111 Identities=16% Similarity=0.090 Sum_probs=69.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--E-Ee------------CCcEEEEeCCCCCCCccch
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--F-KL------------GTKLCLVDLPGYGFAYAKE 155 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~-~~------------~~~~~liDTpG~~~~~~~~ 155 (243)
..++|+++|.+|+|||||+|+|++... .....+.++.+... . .. ...+.+|||||..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~------ 95 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKF--NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE------ 95 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCC--CCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH------
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCC--CcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH------
Confidence 357999999999999999999998731 11111111112111 1 11 3468999999942
Q ss_pred HHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHh-------cCCcEEEEeecCCCCCh
Q 026112 156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-------SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~-------~~~p~i~v~nK~D~~~~ 218 (243)
.+......++.. +|++++|+|++... ....+..++.. .+.|+++|+||+|+...
T Consensus 96 ----~~~~~~~~~~~~---~d~iilV~D~~~~~--s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~ 156 (217)
T 2f7s_A 96 ----RFRSLTTAFFRD---AMGFLLMFDLTSQQ--SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ 156 (217)
T ss_dssp ----HHHHHHHHHHTT---CCEEEEEEETTCHH--HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred ----hHHhHHHHHhcC---CCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccc
Confidence 123334444443 89999999987642 22223333332 36899999999999753
No 148
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.64 E-value=4.8e-16 Score=143.52 Aligned_cols=111 Identities=23% Similarity=0.359 Sum_probs=79.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCC-CceEEE--EEEEe-------------------CCcEEEEeCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTI--NFFKL-------------------GTKLCLVDLPGY 148 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~-gtT~~~--~~~~~-------------------~~~~~liDTpG~ 148 (243)
+.|+|+++|++|+|||||+|+|++.. .....+ |+|.+. .+... ...+.+|||||+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~---v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGh 80 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSA---VASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH 80 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHH---HSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccc---CccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCc
Confidence 45899999999999999999999862 122222 444432 22110 114899999998
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.+... +.. +....+|++++|+|+++++..+..+.+..+...++|+++|+||+|+..
T Consensus 81 e~F~~----------~~~---r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 81 EAFTT----------LRK---RGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp SCCTT----------SBC---SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGST
T ss_pred HHHHH----------HHH---HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEeccccccc
Confidence 54211 111 123448999999999999888888888888888999999999999964
No 149
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.64 E-value=4.2e-16 Score=123.16 Aligned_cols=106 Identities=12% Similarity=0.079 Sum_probs=69.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE-EEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~-~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
....+|+++|.+|||||||+|++++... . ..+..|..+. ..... + ..+.+|||||... +.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~--- 81 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTY-V--QEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPE----------LQ--- 81 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSC-C--CCCCTTCEEEEEEEEETTEEEEEEEEECSSSCC----------HH---
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC-C--CCcCCCcceEEEEEEECCEEEEEEEEECCCChh----------hh---
Confidence 3567999999999999999999998732 1 1122222211 11112 2 4577899999753 11
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTV 216 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~ 216 (243)
++.. +|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+.
T Consensus 82 --~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 82 --FAAW---VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp --HHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred --eecC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 2222 899999999886432222 345555544 367999999999994
No 150
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.64 E-value=3.5e-16 Score=125.87 Aligned_cols=114 Identities=18% Similarity=0.031 Sum_probs=73.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+++|++... ...+.+|+.+... ... + ..+.+|||||..... .+.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~ 74 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYS----------RLR 74 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC---CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCC----------C--
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC---CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHH----------HHH
Confidence 457999999999999999999998731 2333333332211 112 2 378999999975421 111
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCChHH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~~~~ 220 (243)
..++ ..+|++++|+|.+.+.+... ..++..+... +.|+++|+||+|+.....
T Consensus 75 ~~~~---~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 130 (212)
T 2j0v_A 75 PLSY---RGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKG 130 (212)
T ss_dssp CGGG---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHH
T ss_pred Hhhc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcc
Confidence 2222 33899999999876422222 2455555544 789999999999976543
No 151
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.63 E-value=7e-16 Score=122.98 Aligned_cols=113 Identities=14% Similarity=0.037 Sum_probs=70.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe-C--CcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
...++|+++|.+|+|||||+|+|++.. ....+.+|+.+... ... + ..+.+|||||...... +
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~ 84 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG---YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDK----------L 84 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSS----------S
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHH----------H
Confidence 356799999999999999999999873 33444555543321 122 3 3577999999754211 1
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHhc--CCcEEEEeecCCCCCh
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~p~i~v~nK~D~~~~ 218 (243)
...++ ..+|++++|+|++...+.... .++..+... +.|+++|+||+|+...
T Consensus 85 ~~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 85 RPLCY---TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRED 139 (201)
T ss_dssp GGGGG---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGC
T ss_pred hHhhc---CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhc
Confidence 11222 338999999998764322222 355555443 7899999999999753
No 152
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.63 E-value=3e-16 Score=126.98 Aligned_cols=112 Identities=15% Similarity=0.105 Sum_probs=72.6
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
...++|+++|.+|+|||||+|+|++.. ....+.+|+.+... ... ...+.+|||||.... ..+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~ 91 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDC---YPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY----------DNV 91 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSC---CCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGG----------TTT
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCC---CCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhH----------HHH
Confidence 346799999999999999999999873 22333333322211 111 346889999996431 112
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCC
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVF 217 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~ 217 (243)
...++ ..+|++++|+|++...+... ..++..+... +.|+++|+||+|+..
T Consensus 92 ~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 92 RPLCY---SDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp GGGGC---TTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred HHHHc---CCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 22222 34899999999886532222 3455556554 789999999999965
No 153
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.63 E-value=1.3e-16 Score=124.76 Aligned_cols=114 Identities=16% Similarity=-0.014 Sum_probs=67.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE-----EEEeCCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~-----~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|++++.. ....+.+|+.+.. .......+.+|||||..... ...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~ 73 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT---FPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN----------RLR 73 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC---CC----------CBCCCC-------CEEECCCC-CTTT----------TTG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhh----------hhH
Confidence 45799999999999999999999873 2233334433211 11123456799999964311 111
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHhc--CCcEEEEeecCCCCChHH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~p~i~v~nK~D~~~~~~ 220 (243)
..++ ..+|++++|+|++.+.+.... .++..+... +.|+++|+||+|+.....
T Consensus 74 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 129 (182)
T 3bwd_D 74 PLSY---RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQ 129 (182)
T ss_dssp GGGG---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHH
T ss_pred Hhhc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcc
Confidence 2222 348999999998764222222 355555543 789999999999976543
No 154
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.63 E-value=3.2e-15 Score=144.88 Aligned_cols=141 Identities=19% Similarity=0.230 Sum_probs=94.0
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccccc---c-----------cccCCCCceEEEE---EEEeCCcEEEEeCCCCCCCc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV---V-----------RTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~---~-----------~vs~~~gtT~~~~---~~~~~~~~~liDTpG~~~~~ 152 (243)
...++|+++|.+|+|||||+++|++.... . ......|+|.+.. +...+..+.+|||||+.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe--- 370 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA--- 370 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH---
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH---
Confidence 35579999999999999999999974100 0 0112456666542 22235789999999963
Q ss_pred cchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHH-HHHHHHHHHH
Q 026112 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEE 230 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~-~~~~~~~l~~ 230 (243)
.+..........+|++++|+|+.++...+..+++..+...++| +++|+||+|+....+ .....+.+++
T Consensus 371 ----------dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~e 440 (1289)
T 3avx_A 371 ----------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRE 440 (1289)
T ss_dssp ----------HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHH
Confidence 2334444455669999999999988777888888888888999 799999999986433 3334455666
Q ss_pred HHhhCC-----CccccCC
Q 026112 231 SLKANN-----SLVQPVV 243 (243)
Q Consensus 231 ~l~~~~-----~~~~pi~ 243 (243)
.+...+ .+++|+|
T Consensus 441 lLk~~G~~~~~vp~IpvS 458 (1289)
T 3avx_A 441 LLSQYDFPGDDTPIVRGS 458 (1289)
T ss_dssp HHHHTTSCTTTCCEEECC
T ss_pred HHHhccccccceeEEEEE
Confidence 665544 3455654
No 155
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.63 E-value=4.1e-16 Score=124.63 Aligned_cols=111 Identities=18% Similarity=0.221 Sum_probs=68.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
..+|+++|.+|||||||+|+|++. ......+..+.+.. .+...+..+.+|||||..... .+...++.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~l~i~Dt~G~~~~~----------~~~~~~~~- 91 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD-RLGQHVPTLHPTSE-ELTIAGMTFTTFDLGGHIQAR----------RVWKNYLP- 91 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE-EEEETTEEEEEEEECC----C----------CGGGGGGG-
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC-CCCccCCCCCceeE-EEEECCEEEEEEECCCcHhhH----------HHHHHHHh-
Confidence 468999999999999999999987 33333344444322 122235689999999964311 11222332
Q ss_pred ccCccEEEEEEeCCCCCChhh-HHHHHHH-H---hcCCcEEEEeecCCCCC
Q 026112 172 RVSLKRVCLLIDTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~---~~~~p~i~v~nK~D~~~ 217 (243)
.+|++++|+|++.+.+... ..++..+ . ..+.|+++|+||+|+..
T Consensus 92 --~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 92 --AINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp --GCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred --cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 3899999999876422221 2233333 2 24789999999999975
No 156
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.63 E-value=3.1e-17 Score=143.63 Aligned_cols=139 Identities=15% Similarity=0.215 Sum_probs=94.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc-----ccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccc-hHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK-EEVKDAWEELV 165 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~ 165 (243)
..+|+++|.+|+|||||+|+|++.. ....++..+|||++...+..+..+.++||||+.+.... +.+. ....
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~---~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVG---KQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSC---HHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhh---HHHH
Confidence 3589999999999999999999862 24557899999999988887777999999999764311 1111 1112
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
.+.......+.+++++|+...........++.+...+.|+++|+||+|.....+.....+.+++.++.
T Consensus 237 -~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~ 304 (368)
T 3h2y_A 237 -KLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGD 304 (368)
T ss_dssp -HHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTT
T ss_pred -HHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHhCC
Confidence 22222355888999998743211122222344455678999999999999887777777777777654
No 157
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.63 E-value=4.4e-15 Score=131.44 Aligned_cols=151 Identities=19% Similarity=0.272 Sum_probs=98.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccc--cccccCCCCceEEEE-EEEe--C--CcEEEEeCCCCCCCccch----H---
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWG--VVRTSDKPGLTQTIN-FFKL--G--TKLCLVDLPGYGFAYAKE----E--- 156 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~--~~~vs~~~gtT~~~~-~~~~--~--~~~~liDTpG~~~~~~~~----~--- 156 (243)
..++++|+|++|+|||||+|.|+|..- .......++.++... +... + ..+.++|+||++...... .
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 345699999999999999999999731 011122344454422 1111 1 268999999997642211 1
Q ss_pred -HHHHHHHHHHHHHhcc------cCc--c-EEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHH
Q 026112 157 -VKDAWEELVKEYVSTR------VSL--K-RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAM 226 (243)
Q Consensus 157 -~~~~~~~~~~~~~~~~------~~~--d-~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~ 226 (243)
+...+..++..+.... .++ | ++++++|+.+++...+.++++.+. .+.|+++|+||+|.+.+.+......
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~ 199 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSELTKFKI 199 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccchHHHHHHHH
Confidence 1223333333332111 122 3 467788888889999999988887 6899999999999999999999889
Q ss_pred HHHHHHhhCCCccccC
Q 026112 227 QIEESLKANNSLVQPV 242 (243)
Q Consensus 227 ~l~~~l~~~~~~~~pi 242 (243)
.+++.+...+..++.|
T Consensus 200 ~I~~~L~~~gi~I~~i 215 (427)
T 2qag_B 200 KITSELVSNGVQIYQF 215 (427)
T ss_dssp HHHHHHBTTBCCCCCC
T ss_pred HHHHHHHHcCCcEEec
Confidence 9998888888777655
No 158
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.63 E-value=3.8e-16 Score=123.56 Aligned_cols=110 Identities=12% Similarity=0.052 Sum_probs=70.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
...+|+++|.+|+|||||+|+|++.. ....+.+|+.+.. .... ...+.+|||||...... +
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~- 85 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR---FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN----------C- 85 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC----------T-
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC---CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh----------H-
Confidence 45799999999999999999999873 2344444443321 1112 34688999999643211 1
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh------cCCcEEEEeecCCCCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~------~~~p~i~v~nK~D~~~ 217 (243)
..++.. +|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 86 ~~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 86 ERYLNW---AHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp HHHHTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred HHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 223333 899999999875322221 234444433 3789999999999964
No 159
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.62 E-value=6.8e-16 Score=139.15 Aligned_cols=132 Identities=19% Similarity=0.193 Sum_probs=78.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc-----------------------ccccC------CCCceEEEEEE---EeCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------VRTSD------KPGLTQTINFF---KLGT 138 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~-----------------------~~vs~------~~gtT~~~~~~---~~~~ 138 (243)
..++|+++|.+|+|||||+++|+..... +.+.+ ..|+|.++... ..+.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 3469999999999999999999753110 00111 34666665422 2356
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC-------ChhhHHHHHHHHhcCCc-EEEEe
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQTK-YQVVL 210 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-------~~~~~~~~~~l~~~~~p-~i~v~ 210 (243)
.+.+|||||+.+ +..........+|++++|+|+..+. ..+..+.+..+...++| +++|+
T Consensus 122 ~~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivvi 188 (467)
T 1r5b_A 122 RFSLLDAPGHKG-------------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVI 188 (467)
T ss_dssp EEEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEE
T ss_pred EEEEEECCCcHH-------------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEE
Confidence 799999999743 2223333345599999999998763 13455666667777888 99999
Q ss_pred ecCCCCC----hHHHHHHHHHHHHHHhhC
Q 026112 211 TKTDTVF----PIDVARRAMQIEESLKAN 235 (243)
Q Consensus 211 nK~D~~~----~~~~~~~~~~l~~~l~~~ 235 (243)
||+|+.. ...+....+.+++.+...
T Consensus 189 NK~Dl~~~~~~~~~~~~i~~e~~~~l~~~ 217 (467)
T 1r5b_A 189 NKMDEPSVQWSEERYKECVDKLSMFLRRV 217 (467)
T ss_dssp ECTTSTTCSSCHHHHHHHHHHHHHHHHHH
T ss_pred ECccCCCccccHHHHHHHHHHHHHHHHHh
Confidence 9999964 333445555566655543
No 160
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.62 E-value=8.7e-16 Score=120.32 Aligned_cols=113 Identities=20% Similarity=0.144 Sum_probs=72.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
..++|+++|.+|+|||||+|+|++. ......+..+.+.... ...+..+.+|||||..... .....+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~~~----------~~~~~~-- 82 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG-EVVTTKPTIGFNVETL-SYKNLKLNVWDLGGQTSIR----------PYWRCY-- 82 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS-EEEEECSSTTCCEEEE-EETTEEEEEEEEC----CC----------TTGGGT--
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC-CcCccCCcCccceEEE-EECCEEEEEEECCCCHhHH----------HHHHHH--
Confidence 4679999999999999999999976 3344455555433221 2236789999999975311 111122
Q ss_pred cccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCCh
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~ 218 (243)
...+|++++|+|++.+.+... ..++..+. ..+.|+++|+||+|+...
T Consensus 83 -~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 83 -YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp -TTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred -hccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 234899999999876533222 23333332 246899999999999764
No 161
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.62 E-value=4.9e-17 Score=148.15 Aligned_cols=112 Identities=22% Similarity=0.319 Sum_probs=87.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE----eCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
+.|+|+++|.+|+|||||+|+|++.. ......+|+|.++..+. .+..+.+|||||+.... .+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~--~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~----------~~-- 68 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ--VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS----------AM-- 68 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH--HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT----------TS--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--cccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH----------HH--
Confidence 46899999999999999999999873 33446678888764432 25579999999975411 11
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.......+|++++|+|+..+..++..+.+..+...++|+++|+||+|+..
T Consensus 69 -~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 69 -RARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAE 118 (537)
T ss_dssp -BBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTT
T ss_pred -HHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence 11223448999999999999889998999999889999999999999974
No 162
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.62 E-value=3.9e-16 Score=126.58 Aligned_cols=115 Identities=13% Similarity=0.047 Sum_probs=79.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+++.........+..|+|........ +..+.+|||||..... .+...
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~ 83 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFG----------GLRDG 83 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTS----------CCCHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHh----------HHHHH
Confidence 4579999999999999999996654234556778888887765543 3578999999964311 11222
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc--CCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~p~i~v~nK~D~~~~ 218 (243)
++. .+|++++|+|++...+... ..++..+... +.|+++|+||+|+...
T Consensus 84 ~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 84 YYI---QAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134 (221)
T ss_dssp HHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSC
T ss_pred HHh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccc
Confidence 333 3899999999886422222 2344444332 7899999999999753
No 163
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.61 E-value=5.2e-15 Score=116.61 Aligned_cols=116 Identities=12% Similarity=0.087 Sum_probs=69.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCC-ceEEEEEEE--------eCCcEEEEeCCCCCCCccchHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFK--------LGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~g-tT~~~~~~~--------~~~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (243)
.+|+++|.+|||||||+|+|++... .....+.+ +..+..... ....+.+|||||... +..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~-~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~ 71 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKK-SDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE----------FYS 71 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHHH----------HHT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-ccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHH----------HHH
Confidence 6899999999999999999998521 22222222 223322211 245789999999532 122
Q ss_pred HHHHHHhcccCccEEEEEEeCCCCCCh--hhHHHHHHHHh--cCCcEEEEeecCCCCChHHHH
Q 026112 164 LVKEYVSTRVSLKRVCLLIDTKWGVKP--RDHELISLMER--SQTKYQVVLTKTDTVFPIDVA 222 (243)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~--~~~~~~~~l~~--~~~p~i~v~nK~D~~~~~~~~ 222 (243)
+...++.. ++++++|+|.+.+... .-..++..+.. .+.|+++|.||+|+.......
T Consensus 72 ~~~~~~~~---~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 131 (184)
T 2zej_A 72 THPHFMTQ---RALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRK 131 (184)
T ss_dssp TSHHHHHH---SEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHH
T ss_pred hhHHHccC---CcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhH
Confidence 22333333 7899999998764211 11234443332 268999999999998765543
No 164
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.61 E-value=2.5e-16 Score=142.46 Aligned_cols=112 Identities=22% Similarity=0.295 Sum_probs=85.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
+.|+|+++|++|+|||||+++|++.. ......+|+|.+...+. .+..+.+|||||+..... .
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~--v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~-------------~ 67 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK--VASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTS-------------M 67 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH--HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTT-------------S
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC--CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHH-------------H
Confidence 56899999999999999999999862 22344466776654332 256899999999754211 1
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.......+|++++|+|+.++..++..+.+..+...++|+++|+||+|+..
T Consensus 68 ~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 68 RARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPE 117 (501)
T ss_dssp BCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSST
T ss_pred HHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccc
Confidence 12234458999999999988778888888888888999999999999975
No 165
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.61 E-value=1.3e-15 Score=143.17 Aligned_cols=131 Identities=18% Similarity=0.212 Sum_probs=89.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccc----------cccC------CCCceEEEE---EEEeCCcEEEEeCCCCCC
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV----------RTSD------KPGLTQTIN---FFKLGTKLCLVDLPGYGF 150 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~----------~vs~------~~gtT~~~~---~~~~~~~~~liDTpG~~~ 150 (243)
...++|+++|.+|+|||||+|+|+...... .+.+ .+++|.... +...+..+.+|||||+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 456799999999999999999999531100 0111 234444332 222367899999999865
Q ss_pred CccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHH
Q 026112 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (243)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~ 230 (243)
.. . ....++.. +|++++|+|+..+....+..++..+...+.|+++|+||+|+... +.....+.+++
T Consensus 88 f~--~--------~~~~~l~~---aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~-~~~~~~~~l~~ 153 (693)
T 2xex_A 88 FT--V--------EVERSLRV---LDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA-NFEYSVSTLHD 153 (693)
T ss_dssp CC--H--------HHHHHHHH---CSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC-CHHHHHHHHHH
T ss_pred hH--H--------HHHHHHHH---CCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc-chHHHHHHHHH
Confidence 21 1 12222222 99999999999888888888888888889999999999999864 35556667777
Q ss_pred HHhh
Q 026112 231 SLKA 234 (243)
Q Consensus 231 ~l~~ 234 (243)
.+..
T Consensus 154 ~l~~ 157 (693)
T 2xex_A 154 RLQA 157 (693)
T ss_dssp HHCC
T ss_pred HhCC
Confidence 7654
No 166
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.61 E-value=2.7e-15 Score=138.53 Aligned_cols=130 Identities=18% Similarity=0.167 Sum_probs=79.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccc-------ccc------CCCCceEEEE---EEEe-----CCcEEEEeCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-------RTS------DKPGLTQTIN---FFKL-----GTKLCLVDLPGYG 149 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~-------~vs------~~~gtT~~~~---~~~~-----~~~~~liDTpG~~ 149 (243)
...+|+++|.+|+|||||+++|+...... .+. ...|.|.... +.+. +..+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 34689999999999999999998742100 011 1234454422 2111 2468899999985
Q ss_pred CCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
+. ...+..++.. +|++++|+|+..+...+....+..+...++|+++|+||+|+.... ..+..+.+.
T Consensus 83 dF----------~~ev~~~l~~---aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~-~~~v~~ei~ 148 (599)
T 3cb4_D 83 DF----------SYEVSRSLAA---CEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD-PERVAEEIE 148 (599)
T ss_dssp GG----------HHHHHHHHHH---CSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHH
T ss_pred HH----------HHHHHHHHHH---CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc-HHHHHHHHH
Confidence 41 1222333333 899999999998887777776666677789999999999998643 333445555
Q ss_pred HHHhh
Q 026112 230 ESLKA 234 (243)
Q Consensus 230 ~~l~~ 234 (243)
+.++.
T Consensus 149 ~~lg~ 153 (599)
T 3cb4_D 149 DIVGI 153 (599)
T ss_dssp HHTCC
T ss_pred HHhCC
Confidence 55543
No 167
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.60 E-value=9.1e-16 Score=120.83 Aligned_cols=111 Identities=16% Similarity=0.145 Sum_probs=70.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE-EE-EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-IN-FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~-~~-~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++... ...+.+|+.. .. .... ...+.+|||||.... ..+.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~ 72 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY----------DNVR 72 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC---CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG----------TTTG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEEECCEEEEEEEEECCCChhh----------hhhH
Confidence 347999999999999999999998732 1222222221 11 1111 246889999996431 1111
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHh--cCCcEEEEeecCCCCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~D~~~ 217 (243)
..+ ...+|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 73 ~~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 73 PLS---YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp GGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred Hhh---cCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 112 234899999999876422222 234444544 2689999999999974
No 168
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.60 E-value=3.3e-15 Score=136.37 Aligned_cols=129 Identities=19% Similarity=0.211 Sum_probs=87.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccc--------------ccc------CCCCceEE---EEEEEeCCcEEEEeCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV--------------RTS------DKPGLTQT---INFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~--------------~vs------~~~gtT~~---~~~~~~~~~~~liDTpG~ 148 (243)
..+|+++|.+|+|||||+|+|+...... .+. ...|+|.. ..+...+..+.+|||||+
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 3699999999999999999999742100 011 12233322 123334678999999998
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHH
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 228 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l 228 (243)
.+.. .....++ ..+|++++|+|+..+.......++..+...++|+++|+||+|+..... .+..+.+
T Consensus 93 ~df~----------~~~~~~l---~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~-~~~~~~i 158 (529)
T 2h5e_A 93 EDFS----------EDTYRTL---TAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDP-MELLDEV 158 (529)
T ss_dssp TTCC----------HHHHHGG---GGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCH-HHHHHHH
T ss_pred hhHH----------HHHHHHH---HHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccH-HHHHHHH
Confidence 5421 1122233 349999999999988888888888888888999999999999986532 3456667
Q ss_pred HHHHhh
Q 026112 229 EESLKA 234 (243)
Q Consensus 229 ~~~l~~ 234 (243)
++.++.
T Consensus 159 ~~~l~~ 164 (529)
T 2h5e_A 159 ENELKI 164 (529)
T ss_dssp HHHHCC
T ss_pred HHHhCC
Confidence 776654
No 169
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.59 E-value=3.8e-17 Score=143.14 Aligned_cols=139 Identities=16% Similarity=0.169 Sum_probs=97.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc----cccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccc-hHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK-EEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~----~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~ 166 (243)
..+|+++|.||+|||||+|+|++. .....+++.+|||++...+..+..+.++||||+...... ..+. ....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~---~~~l- 237 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVD---ARDL- 237 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSC---TTTH-
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHh---HHHH-
Confidence 358999999999999999999986 123668899999999988888878999999999764311 1111 0111
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
.++-.....+.+++++++...........++.+...+.|+++++||+|.....+.....+.+++.++.
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~ 305 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGE 305 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTT
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCC
Confidence 22222345899999999843211112222344445578999999999999777777777777777653
No 170
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.38 E-value=8.5e-17 Score=128.83 Aligned_cols=114 Identities=14% Similarity=-0.015 Sum_probs=74.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE-----EEeCCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF-----FKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~-----~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
...++|+++|.+|+|||||+|+|++.. ....+.+++.+... ......+.+|||||... +...
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~ 94 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED----------YDRL 94 (204)
Confidence 345799999999999999999999762 22333334433211 11234566999999643 1122
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCChH
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~~~ 219 (243)
...++. .+|++++|+|++.+.+... ..++..+... +.|+++|+||+|+....
T Consensus 95 ~~~~~~---~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~ 150 (204)
T 3th5_A 95 RPLSYP---QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150 (204)
Confidence 223332 3899999999876433332 2455555544 78999999999997643
No 171
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.59 E-value=9.1e-15 Score=122.73 Aligned_cols=147 Identities=22% Similarity=0.335 Sum_probs=97.2
Q ss_pred CEEEEecCCCCchhHHHHHHhccccccccc-------CCCCceE--EEEE----EEeCCcEEEEeCCCCCCCccch----
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------DKPGLTQ--TINF----FKLGTKLCLVDLPGYGFAYAKE---- 155 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs-------~~~gtT~--~~~~----~~~~~~~~liDTpG~~~~~~~~---- 155 (243)
++++++|++|||||||+|.|+|... ...+ +.+.++. .+.+ ......+.++|+||++......
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~-~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV-SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 5899999999999999999998631 1111 1111111 1111 1123478999999997642211
Q ss_pred HHHHHHH----HHHHHHHhcc-------cCccEEEEEEeC-CCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHH
Q 026112 156 EVKDAWE----ELVKEYVSTR-------VSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 223 (243)
Q Consensus 156 ~~~~~~~----~~~~~~~~~~-------~~~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~ 223 (243)
.+..... ......++.. ..+++.++++|. .+++.+.+.++++.+... .++++|+||+|...+.+...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~~e~~~ 160 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTLEEKSE 160 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCHHHHHH
Confidence 1222111 1111121111 125778889985 478899999999999877 99999999999999999999
Q ss_pred HHHHHHHHHhhCCCcccc
Q 026112 224 RAMQIEESLKANNSLVQP 241 (243)
Q Consensus 224 ~~~~l~~~l~~~~~~~~p 241 (243)
....+++.+..++..++|
T Consensus 161 ~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 161 FKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHcCccccC
Confidence 999999999999888775
No 172
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.59 E-value=1.7e-14 Score=135.78 Aligned_cols=133 Identities=20% Similarity=0.215 Sum_probs=93.0
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccccc-c---------cccC------CCCceEEEEEE---EeC-------CcEEEE
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-V---------RTSD------KPGLTQTINFF---KLG-------TKLCLV 143 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~-~---------~vs~------~~gtT~~~~~~---~~~-------~~~~li 143 (243)
...++|+|+|..|+|||||+++|+..... . .+.+ ..|.|...... ..+ ..+.||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 34679999999999999999999753110 0 0111 23455443222 223 789999
Q ss_pred eCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHH
Q 026112 144 DLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 223 (243)
Q Consensus 144 DTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~ 223 (243)
||||+.+. ......+++. +|++++|+|+..+.......++..+...++|+++|+||+|+... +..+
T Consensus 88 DTPG~~df----------~~~~~~~l~~---aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~-~~~~ 153 (704)
T 2rdo_7 88 DTPGHVDF----------TIEVERSMRV---LDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA-NFLK 153 (704)
T ss_pred eCCCccch----------HHHHHHHHHH---CCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc-cHHH
Confidence 99998541 1222233333 89999999999887777777778787789999999999999764 3566
Q ss_pred HHHHHHHHHhhCC
Q 026112 224 RAMQIEESLKANN 236 (243)
Q Consensus 224 ~~~~l~~~l~~~~ 236 (243)
..+.+++.+....
T Consensus 154 ~~~~l~~~l~~~~ 166 (704)
T 2rdo_7 154 VVNQIKTRLGANP 166 (704)
T ss_pred HHHHHHHHhCCCc
Confidence 7777777776543
No 173
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.59 E-value=2e-15 Score=121.49 Aligned_cols=111 Identities=16% Similarity=0.145 Sum_probs=70.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE-EE-EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-IN-FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~-~~-~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++... ...+..|+.. .. .... ...+.+|||||.... ..+.
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~ 93 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY----------DNVR 93 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC---CSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG----------TTTG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC---CCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhh----------hHHH
Confidence 347999999999999999999998732 1222222221 11 1111 246889999996431 1111
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHh--cCCcEEEEeecCCCCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~D~~~ 217 (243)
..+ ...+|++++|+|++...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 94 ~~~---~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 94 PLS---YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp GGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred Hhh---ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 122 234899999999876422222 234455544 2689999999999974
No 174
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.59 E-value=9.1e-16 Score=132.38 Aligned_cols=111 Identities=17% Similarity=0.228 Sum_probs=70.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+|+|++.. . +...+ |.+.... ..+..+.+|||||.... ..+...+
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~-~--~~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~ 229 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGE-I--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKI----------RPLWRHY 229 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSC-C--EEEEE--ETTEEEEEEEETTEEEEEEECC---------------CCSHHHH
T ss_pred cceEEEECCCCccHHHHHHHHhCCC-C--CCccc--ccceEEEEEecCcEEEEEEECCCCHhH----------HHHHHHH
Confidence 4589999999999999999999873 2 22222 2222222 23567999999995321 1223333
Q ss_pred HhcccCccEEEEEEeCCCCCChh--hHHHHHHHHhc---CCcEEEEeecCCCCChHH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERS---QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~--~~~~~~~l~~~---~~p~i~v~nK~D~~~~~~ 220 (243)
+.. +|++++|+|++...... ...+...+... ++|+++|+||+|+.....
T Consensus 230 ~~~---ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~ 283 (329)
T 3o47_A 230 FQN---TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 283 (329)
T ss_dssp HTT---EEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred hcc---CCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC
Confidence 333 89999999987543322 23344444433 789999999999986543
No 175
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.58 E-value=2.5e-15 Score=138.55 Aligned_cols=128 Identities=24% Similarity=0.260 Sum_probs=80.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccc-------cccC------CCCceEEE---EEEEe-----CCcEEEEeCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-------RTSD------KPGLTQTI---NFFKL-----GTKLCLVDLPGYG 149 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~-------~vs~------~~gtT~~~---~~~~~-----~~~~~liDTpG~~ 149 (243)
..++|+++|++|+|||||+++|+...... .+.+ ..|.|... ...+. +..+.+|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 35699999999999999999998742100 0001 13334321 12111 2468899999985
Q ss_pred CCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
+. ...+.+++. .+|++++|+|++.+...+....+..+...++|+++|+||+|+.... ..+..+.+.
T Consensus 85 dF----------~~ev~r~l~---~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~-~~~v~~el~ 150 (600)
T 2ywe_A 85 DF----------SYEVSRALA---ACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD-VDRVKKQIE 150 (600)
T ss_dssp GG----------HHHHHHHHH---TCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHH
T ss_pred hH----------HHHHHHHHH---hCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC-HHHHHHHHH
Confidence 41 122233333 3899999999999888887777777777899999999999997643 333344444
Q ss_pred HHH
Q 026112 230 ESL 232 (243)
Q Consensus 230 ~~l 232 (243)
+.+
T Consensus 151 ~~l 153 (600)
T 2ywe_A 151 EVL 153 (600)
T ss_dssp HTS
T ss_pred Hhh
Confidence 443
No 176
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.58 E-value=3.6e-15 Score=121.24 Aligned_cols=115 Identities=18% Similarity=0.142 Sum_probs=69.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+++++.........+..|.......... ...+.||||+|.... ..+...
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~----------~~l~~~ 81 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERF----------RSLIPS 81 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTC----------GGGHHH
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhh----------hhHHHH
Confidence 3479999999999999999999976321111221121111111122 246789999996431 233445
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH---hcCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~p~i~v~nK~D~~~~ 218 (243)
|++. ++++++|+|.+...+... ..++..+. ..+.|+++|.||+|+...
T Consensus 82 ~~~~---a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~ 133 (216)
T 4dkx_A 82 YIRD---SAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133 (216)
T ss_dssp HHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGG
T ss_pred Hhcc---ccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhc
Confidence 5544 899999999876422222 23444443 236899999999998654
No 177
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.58 E-value=6.4e-15 Score=138.52 Aligned_cols=130 Identities=21% Similarity=0.237 Sum_probs=87.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc----ccc------cC------CCCceEEEE---EEEeCCcEEEEeCCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV----VRT------SD------KPGLTQTIN---FFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~----~~v------s~------~~gtT~~~~---~~~~~~~~~liDTpG~~~~ 151 (243)
..++|+++|.+|+|||||+|+|+..... ..+ .+ ..+.|.... +...+..+.+|||||+.+.
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 4579999999999999999999843110 001 11 234444332 2223678999999998541
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHH
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 231 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~ 231 (243)
......++.. +|++++|+|+..+.......++..+...++|+++|+||+|+... +.....+.+++.
T Consensus 91 ----------~~~~~~~l~~---aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~-~~~~~~~~l~~~ 156 (691)
T 1dar_A 91 ----------TIEVERSMRV---LDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA-DLWLVIRTMQER 156 (691)
T ss_dssp ----------HHHHHHHHHH---CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC-CHHHHHHHHHHT
T ss_pred ----------HHHHHHHHHH---CCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC-CHHHHHHHHHHH
Confidence 1122233332 89999999999888888888888888889999999999999864 355556666666
Q ss_pred Hhh
Q 026112 232 LKA 234 (243)
Q Consensus 232 l~~ 234 (243)
+..
T Consensus 157 l~~ 159 (691)
T 1dar_A 157 LGA 159 (691)
T ss_dssp TCC
T ss_pred hCC
Confidence 654
No 178
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.57 E-value=1e-16 Score=127.90 Aligned_cols=113 Identities=19% Similarity=0.159 Sum_probs=68.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCce--EEEEEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT--~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++... .....++++ ........+ ..+.+|||||...... ..
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~ 99 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT----------IT 99 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCC--CCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCC----------CS
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC--CCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHH----------HH
Confidence 357999999999999999999998731 112122222 222222222 4689999999643211 11
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~ 218 (243)
..++ ..+|++++|+|++...+... ..++..+... +.|+++|+||+|+...
T Consensus 100 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 100 SSYY---RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp CC-----CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred HHHh---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 1122 23899999999886422222 2344444433 6899999999999754
No 179
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.57 E-value=1.6e-15 Score=131.89 Aligned_cols=87 Identities=23% Similarity=0.226 Sum_probs=56.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE--Ee------------------CCcEEEEeCCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL------------------GTKLCLVDLPGYGFA 151 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~--~~------------------~~~~~liDTpG~~~~ 151 (243)
..+|+++|.||+|||||+|+|++.. ..++++|+||.++... .. +..+.+|||||+...
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~--~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 3689999999999999999999983 6788899998875421 11 246999999998653
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCC
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~ 186 (243)
.... ..+...++...+.+|++++|+|++.
T Consensus 80 a~~~------~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASKG------EGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHH------GGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccc------chHHHHHHHHHHhcCeEEEEEecCC
Confidence 2110 1111222223345999999999875
No 180
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.57 E-value=1.4e-14 Score=128.41 Aligned_cols=150 Identities=20% Similarity=0.262 Sum_probs=88.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccccccc------CCCCceE-EEEEE-----EeCCcEEEEeCCCCCCCccc----
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS------DKPGLTQ-TINFF-----KLGTKLCLVDLPGYGFAYAK---- 154 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs------~~~gtT~-~~~~~-----~~~~~~~liDTpG~~~~~~~---- 154 (243)
-.++|+|+|++|+|||||+|.|++... ...+ ....++. +...+ .....+.++||||++.....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~-~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDL-YSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCC-CCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCC-CCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 346899999999999999999999732 1111 0111221 11110 11236889999998753211
Q ss_pred hHHHHHHHHHHHHHHhc--------c--cCccEEEEEEeCC-CCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHH
Q 026112 155 EEVKDAWEELVKEYVST--------R--VSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 223 (243)
Q Consensus 155 ~~~~~~~~~~~~~~~~~--------~--~~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~ 223 (243)
..+.......+..++.. . ..+++++++++++ +++.+.+..+++.+.. ++|+++|+||+|+..+.++..
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~~ 187 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQ 187 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHHHHH
Confidence 11111111222233211 1 1244566666665 5788888788888765 799999999999999888877
Q ss_pred HHHHHHHHHhhCCCccccC
Q 026112 224 RAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 224 ~~~~l~~~l~~~~~~~~pi 242 (243)
....+++.+..++..++++
T Consensus 188 ~k~~i~~~~~~~~i~~~~~ 206 (418)
T 2qag_C 188 FKKQIMKEIQEHKIKIYEF 206 (418)
T ss_dssp HHHHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHHHHcCCeEEeC
Confidence 7788888888777666543
No 181
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=4.6e-15 Score=120.13 Aligned_cols=114 Identities=18% Similarity=0.112 Sum_probs=68.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|||||||+|++++.. ...++.++.++.+. ..... + ..+.++||+|... . ...+.
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~-~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~---~------~~~l~ 105 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVH-DSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG---E------NEWLH 105 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCC-CTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH---H------HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC-CCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc---h------hhhHH
Confidence 45799999999999999999999752 23334333333222 11122 2 2467899999532 0 11122
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~ 217 (243)
..| ...++++++|+|.+...+... ..+...+.. .++|+++|+||+|+..
T Consensus 106 ~~~---~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 106 DHC---MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp HCC---CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred HHH---HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence 222 234899999999875322111 234443432 2689999999999964
No 182
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.55 E-value=6.1e-15 Score=126.27 Aligned_cols=113 Identities=16% Similarity=-0.005 Sum_probs=75.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCC--cEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGT--KLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|++++.. ....+.+|+.+..... .+. .+.+|||||..... ...
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~ 220 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD----------RLR 220 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSC---CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT----------TTG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCC---CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhh----------HHH
Confidence 35799999999999999999999872 3444555665543221 233 45599999974311 111
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHhc--CCcEEEEeecCCCCChH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~p~i~v~nK~D~~~~~ 219 (243)
..+ ...+|++++|+|++.+.+..+. .++..+... +.|+++|+||+|+....
T Consensus 221 ~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 275 (332)
T 2wkq_A 221 PLS---YPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 275 (332)
T ss_dssp GGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCH
T ss_pred HHh---ccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhccccc
Confidence 122 2348999999998864332222 345555544 78999999999997543
No 183
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.54 E-value=1.3e-14 Score=131.65 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=72.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
.++|+++|.+|+|||||+|+|++.. .....+..+++... +...+..+.+|||||.... ..+...++
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~-~~~~~~T~~~~~~~-~~~~~~~~~l~Dt~G~~~~----------~~~~~~~~-- 387 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET-VTYKNVKFNVWDVGGQDKI----------RPLWRHYY-- 387 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS-CCCCCCCSSEEEEE-EESSSCEEEEEEECCCGGG----------SGGGGGGG--
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC-CCCcCCccceeEEE-EEeCCEEEEEEECCCcHHH----------HHHHHHHh--
Confidence 4699999999999999999999983 23233322322221 1123678999999996431 11122233
Q ss_pred ccCccEEEEEEeCCCCCChhh--HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 172 RVSLKRVCLLIDTKWGVKPRD--HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
..+|++++|+|++...+... ..+.+.+.. .++|+++|+||+|+...
T Consensus 388 -~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 388 -TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp -TTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred -ccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 34999999999886522222 222333322 37899999999999754
No 184
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.54 E-value=5.2e-15 Score=128.62 Aligned_cols=123 Identities=20% Similarity=0.236 Sum_probs=69.6
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccc-----cccc-------------------------------ccCCC------Cc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQW-----GVVR-------------------------------TSDKP------GL 127 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~-----~~~~-------------------------------vs~~~------gt 127 (243)
...+.|+|+|+||||||||+|+|++.. ++.. +.+.+ |+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 457899999999999999999999731 1111 11111 22
Q ss_pred eEEEEE-----EEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhc
Q 026112 128 TQTINF-----FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS 202 (243)
Q Consensus 128 T~~~~~-----~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~ 202 (243)
|++... ...+..+.++||||+..+ + ..+ ...+|++++|+|++.+..... +.. .-.
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~------~~l-------~~~~d~vl~V~d~~~~~~~~~--i~~--~il 211 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQS---E------FAV-------ADMVDMFVLLLPPAGGDELQG--IKR--GII 211 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--C---H------HHH-------HTTCSEEEEEECCC----------------C
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchh---h------hhH-------HhhCCEEEEEEcCCcchhHHH--hHH--HHH
Confidence 322100 013568999999998642 1 111 124899999999876421111 111 113
Q ss_pred CCcEEEEeecCCCCChHHHHHHHHHHHHHH
Q 026112 203 QTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (243)
Q Consensus 203 ~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l 232 (243)
..|.++|+||+|+............+...+
T Consensus 212 ~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l 241 (349)
T 2www_A 212 EMADLVAVTKSDGDLIVPARRIQAEYVSAL 241 (349)
T ss_dssp CSCSEEEECCCSGGGHHHHHHHHHHHHHHH
T ss_pred hcCCEEEEeeecCCCchhHHHHHHHHHHHH
Confidence 568899999999986544444444454443
No 185
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.53 E-value=1.8e-14 Score=132.04 Aligned_cols=134 Identities=19% Similarity=0.261 Sum_probs=95.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccc--------------cccC------CCCceE---EEEEEEeCCcEEEEeCCCCC
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVV--------------RTSD------KPGLTQ---TINFFKLGTKLCLVDLPGYG 149 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~--------------~vs~------~~gtT~---~~~~~~~~~~~~liDTpG~~ 149 (243)
.+|+|+|..++|||||..+|+-..... .+++ ..|.|. .+.+.+.+..+.||||||+.
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 489999999999999999997432100 0111 112221 22344457899999999986
Q ss_pred CCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
+.. .+ +.+.++ .+|++++|+|+..++..+...+++.+...++|.++++||+|.... +..+.++.++
T Consensus 112 DF~--~E--------v~raL~---~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~a-d~~~~~~~i~ 177 (548)
T 3vqt_A 112 DFS--ED--------TYRVLT---AVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREAL-HPLDVMADIE 177 (548)
T ss_dssp GCS--HH--------HHHHHH---SCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCC-CHHHHHHHHH
T ss_pred HHH--HH--------HHHHHH---hcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhc-chhHhhhhhh
Confidence 521 11 122222 299999999999999999999999999999999999999999764 4677778888
Q ss_pred HHHhhCCCccc
Q 026112 230 ESLKANNSLVQ 240 (243)
Q Consensus 230 ~~l~~~~~~~~ 240 (243)
+.+.....+++
T Consensus 178 ~~l~~~~~p~~ 188 (548)
T 3vqt_A 178 QHLQIECAPMT 188 (548)
T ss_dssp HHHTSEEEESE
T ss_pred hhcCCceEeEE
Confidence 88876544433
No 186
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.53 E-value=1.6e-14 Score=132.23 Aligned_cols=137 Identities=18% Similarity=0.183 Sum_probs=83.0
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE--------Ee---CCcEEEEeCCCCCCCccchHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--------KL---GTKLCLVDLPGYGFAYAKEEVK 158 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~--------~~---~~~~~liDTpG~~~~~~~~~~~ 158 (243)
....+|+++|.+|||||||+|+|++........+..|.+...... .. +..+.+|||||......
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~----- 113 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHA----- 113 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTT-----
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHH-----
Confidence 356799999999999999999999873211112222222111100 11 46799999999543211
Q ss_pred HHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcC--CcEEEEeecCCCCChHHHHHHHHHHHHHHhhCC
Q 026112 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTDTVFPIDVARRAMQIEESLKANN 236 (243)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~--~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~ 236 (243)
+...++.. +|++++|+|++.. .....++..+...+ .|+++|+||+|+....+.. .+.+++.+...+
T Consensus 114 -----~~~~~l~~---~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~--~~~~~~~~~~~~ 181 (535)
T 3dpu_A 114 -----SHQFFMTR---SSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIE--QKKINERFPAIE 181 (535)
T ss_dssp -----TCHHHHHS---SEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCC--HHHHHHHCGGGT
T ss_pred -----HHHHHccC---CcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccC--HHHHHHHHHhcC
Confidence 11223333 8999999998753 44456777777654 8999999999997643321 234555555555
Q ss_pred CccccCC
Q 026112 237 SLVQPVV 243 (243)
Q Consensus 237 ~~~~pi~ 243 (243)
..+++++
T Consensus 182 ~~~~~vS 188 (535)
T 3dpu_A 182 NRFHRIS 188 (535)
T ss_dssp TCEEECC
T ss_pred CceEEEe
Confidence 5566554
No 187
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.52 E-value=4e-14 Score=125.46 Aligned_cols=138 Identities=20% Similarity=0.265 Sum_probs=88.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccc-hHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAK-EEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~ 166 (243)
...|+|+|++|||||||+|+|++.. ..++.++++|........ ...+.++||||+.+.... ..+ ..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~--~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L-------~~ 227 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGL-------GL 227 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC--CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCS-------CH
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC--ccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhh-------hH
Confidence 5679999999999999999999983 467788888876544332 267999999998653111 001 11
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccc
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~ 240 (243)
.++.....++.+++++|.+ .-...+ ..+.+.+.. ...|.++|+||+|+... .....+.+.+...+..++
T Consensus 228 ~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~----~~~~~l~~~l~~~g~~vi 302 (416)
T 1udx_A 228 EFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE----EAVKALADALAREGLAVL 302 (416)
T ss_dssp HHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH----HHHHHHHHHHHTTTSCEE
T ss_pred HHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH----HHHHHHHHHHHhcCCeEE
Confidence 1222334589999999986 111111 122222222 25899999999999875 233445555555555555
Q ss_pred cCC
Q 026112 241 PVV 243 (243)
Q Consensus 241 pi~ 243 (243)
+++
T Consensus 303 ~iS 305 (416)
T 1udx_A 303 PVS 305 (416)
T ss_dssp ECC
T ss_pred EEE
Confidence 553
No 188
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.52 E-value=1.2e-14 Score=126.94 Aligned_cols=85 Identities=24% Similarity=0.277 Sum_probs=59.8
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE------------------------eCCcEEEEeCCCC
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------------------------LGTKLCLVDLPGY 148 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~------------------------~~~~~~liDTpG~ 148 (243)
++|+++|.||+|||||+|+|++. . ..+++++++|.+.+... .+..+.+|||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~-~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA-N-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH-H-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC-C-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 57999999999999999999997 3 56788888876543321 2356999999998
Q ss_pred CCCccc-hHHHHHHHHHHHHHHhcccCccEEEEEEeCCC
Q 026112 149 GFAYAK-EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186 (243)
Q Consensus 149 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~ 186 (243)
...... ..+. ..++...+.+|++++|+|++.
T Consensus 80 ~~~a~~~~~lg-------~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLG-------NQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTT-------HHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHH-------HHHHHHHHhCCEEEEEEECCC
Confidence 754221 1121 122222334999999999874
No 189
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.51 E-value=1e-14 Score=115.93 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=65.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---EEEEeC--CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~---~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|||||||+|++++.. ...++.+++++.+. .....+ ..+.++||+|.... . ..+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~---~------~~~~~ 75 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVH-DSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE---N------EWLHD 75 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS-CCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-------------CTTGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCc-CCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcch---h------hhHHH
Confidence 4699999999999999999999752 23333333332222 121123 24578999996431 0 00111
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~ 217 (243)
.|++. +|++++|+|.+...+... ..+...+.. .+.|+++|.||+|+..
T Consensus 76 ~~~~~---~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 76 HCMQV---GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 128 (192)
T ss_dssp GHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG
T ss_pred hhccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc
Confidence 22222 799999999875322221 233333332 3689999999999864
No 190
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.50 E-value=5.5e-14 Score=134.76 Aligned_cols=128 Identities=19% Similarity=0.238 Sum_probs=85.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccC---------------CCCceEEE---EEEEe----------------C
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---------------KPGLTQTI---NFFKL----------------G 137 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~---------------~~gtT~~~---~~~~~----------------~ 137 (243)
.++|+|+|.+|+|||||+|+|+.... ...+. ..|.|... .+... +
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g-~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAG-IISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHB-CCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcC-CcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 46999999999999999999997521 11111 12223221 11111 4
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC-
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV- 216 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~- 216 (243)
..+.+|||||+.+.. .....+++. +|++++|+|+..+...+...++..+...++|+++|+||+|+.
T Consensus 98 ~~i~liDTPG~~df~----------~~~~~~l~~---aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS----------SEVTAALRV---TDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEECCCCCCSSC----------HHHHHHHHT---CSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred ceEEEEECcCchhhH----------HHHHHHHHh---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcch
Confidence 578999999986521 122333333 999999999999888888777777777789999999999986
Q ss_pred -----ChHH----HHHHHHHHHHHHh
Q 026112 217 -----FPID----VARRAMQIEESLK 233 (243)
Q Consensus 217 -----~~~~----~~~~~~~l~~~l~ 233 (243)
++.+ +.+.++.++..+.
T Consensus 165 ~e~~~~~~e~~~~~~~~~~~i~~~l~ 190 (842)
T 1n0u_A 165 LELQVSKEDLYQTFARTVESVNVIVS 190 (842)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHHHHh
Confidence 2333 3444555555553
No 191
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.48 E-value=2.1e-13 Score=127.80 Aligned_cols=128 Identities=23% Similarity=0.274 Sum_probs=90.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc----cc------ccC------CCCce---EEEEEEEeCCcEEEEeCCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV----VR------TSD------KPGLT---QTINFFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~----~~------vs~------~~gtT---~~~~~~~~~~~~~liDTpG~~~~ 151 (243)
...+|+++|++|+|||||+++|++.... .. ..+ ..+.| ....+...+..+.+|||||+.+.
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 4579999999999999999999954211 00 000 11222 22333344678999999997531
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHH
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 231 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~ 231 (243)
......++.. +|++++|+|+..+.......++..+...++|+++|+||+|+. ....+..+.+.+.
T Consensus 88 ----------~~~~~~~l~~---ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~--~~~~~~~~~l~~~ 152 (665)
T 2dy1_A 88 ----------VGEIRGALEA---ADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG--GDYYALLEDLRST 152 (665)
T ss_dssp ----------HHHHHHHHHH---CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC--CCHHHHHHHHHHH
T ss_pred ----------HHHHHHHHhh---cCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh--hhHHHHHHHHHHH
Confidence 1122233332 899999999988888888888888888899999999999997 3455666677776
Q ss_pred Hh
Q 026112 232 LK 233 (243)
Q Consensus 232 l~ 233 (243)
+.
T Consensus 153 l~ 154 (665)
T 2dy1_A 153 LG 154 (665)
T ss_dssp HC
T ss_pred hC
Confidence 65
No 192
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.47 E-value=2.9e-13 Score=115.94 Aligned_cols=116 Identities=15% Similarity=0.137 Sum_probs=71.4
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE--EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~--~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
+|+++|.+|+|||||++.+.+... .......+.|..+.+. .....+.+|||||...-..+. | ....|++.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~-~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf~~~~-----l--~~~~yyr~ 72 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQ-PLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPS-----Y--DSERLFKS 72 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCC-SGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSSCCCS-----H--HHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHcCCC-CCccceecCeeeeeeEEEccEEEEEEEECCCchhccchh-----h--hhhhhccC
Confidence 588999999999999998876521 2111112222222211 224679999999975421100 1 12345544
Q ss_pred ccCccEEEEEEeCCCCCChhhHHHHHHHH---h--cCCcEEEEeecCCCCChHH
Q 026112 172 RVSLKRVCLLIDTKWGVKPRDHELISLME---R--SQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~~~~~~~l~---~--~~~p~i~v~nK~D~~~~~~ 220 (243)
++++++|+|++.........+.+++. . .++|+++|+||+|+..+.+
T Consensus 73 ---a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~ 123 (331)
T 3r7w_B 73 ---VGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDF 123 (331)
T ss_dssp ---CSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHH
T ss_pred ---CCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhh
Confidence 89999999988763232233323232 2 3689999999999987654
No 193
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.47 E-value=6.3e-13 Score=113.18 Aligned_cols=151 Identities=21% Similarity=0.256 Sum_probs=82.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCC------CceEEE---EEE----EeCCcEEEEeCCCCCCCcc----
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP------GLTQTI---NFF----KLGTKLCLVDLPGYGFAYA---- 153 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~------gtT~~~---~~~----~~~~~~~liDTpG~~~~~~---- 153 (243)
-.++|+++|++|+|||||+|.|++.. ....+..+ ..|... ... .....+.++||||++....
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~-~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTD-LYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCC-ccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34789999999999999999998851 12111111 011111 111 1134689999999853211
Q ss_pred chHHHHHHHHHHHHHHhccc----------CccEEEEEEeCC-CCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHH
Q 026112 154 KEEVKDAWEELVKEYVSTRV----------SLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA 222 (243)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~----------~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~ 222 (243)
-..+...+......|+.... .+++++++++.+ .++...+.++++.+.. ..|+++|+||+|+....++.
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~-~~~iilV~~K~Dl~~~~e~~ 174 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHN-KVNIVPVIAKADTLTLKERE 174 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTT-TSCEEEEECCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHh-cCCEEEEEEeCCCCCHHHHH
Confidence 01111111122223333221 134455565543 3577777666665543 57999999999999877766
Q ss_pred HHHHHHHHHHhhCCCccccCC
Q 026112 223 RRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 223 ~~~~~l~~~l~~~~~~~~pi~ 243 (243)
...+.+.+.+..++..+++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~e~S 195 (301)
T 2qnr_A 175 RLKKRILDEIEEHNIKIYHLP 195 (301)
T ss_dssp HHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHHHcCCeEEecC
Confidence 666777777777777766653
No 194
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.46 E-value=1.9e-13 Score=108.88 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=68.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|++|||||||+|+|++........+..|++........ + ..+.+|||||..... .....+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~----------~~~~~~ 74 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYR----------RITSAY 74 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTT----------CCCHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhh----------hhhHHH
Confidence 368999999999999999999997321112222222222222222 3 356789999964311 111222
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
+. .++++++|+|.....+... ..++..+.. .+.|+++|+||+|+..
T Consensus 75 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 75 YR---GAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp HT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred Hh---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 22 3799999999875422222 234444433 3689999999999964
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.44 E-value=1.1e-13 Score=120.54 Aligned_cols=123 Identities=19% Similarity=0.227 Sum_probs=73.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-----ccccccCCCCceE-------------------EEEE-------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQ-------------------TINF------------- 133 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs~~~gtT~-------------------~~~~------------- 133 (243)
..++|+++|.+|+|||||++.|+... +...+..-++++. .+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 45799999999999999999997431 1111111111111 0000
Q ss_pred ----------EEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcC
Q 026112 134 ----------FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ 203 (243)
Q Consensus 134 ----------~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~ 203 (243)
...+..+.+|||||++.+ . ..+. ..+|++++|+|+..+..... +.. .-..
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~---~------~~~~-------~~aD~vl~V~d~~~~~~~~~--l~~--~~~~ 217 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQS---E------VAVA-------NMVDTFVLLTLARTGDQLQG--IKK--GVLE 217 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSH---H------HHHH-------TTCSEEEEEEESSTTCTTTT--CCT--TSGG
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcH---H------HHHH-------HhCCEEEEEECCCCCccHHH--HHH--hHhh
Confidence 002578999999998651 0 1111 34999999999765422111 111 0124
Q ss_pred CcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 204 TKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 204 ~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
.|+++|+||+|+............+.+.+.
T Consensus 218 ~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~ 247 (355)
T 3p32_A 218 LADIVVVNKADGEHHKEARLAARELSAAIR 247 (355)
T ss_dssp GCSEEEEECCCGGGHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCcChhHHHHHHHHHHHHHh
Confidence 699999999999876666666666666553
No 196
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.42 E-value=3.2e-13 Score=127.47 Aligned_cols=133 Identities=20% Similarity=0.230 Sum_probs=91.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccc----cc------cC------CCCceEE---EEEEEe-------CCcEEEEe
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV----RT------SD------KPGLTQT---INFFKL-------GTKLCLVD 144 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~----~v------s~------~~gtT~~---~~~~~~-------~~~~~liD 144 (243)
+..+|+|+|+.++|||||..+|+...... .+ .+ ..|.|.. +.+.+. +..+.|||
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 45699999999999999999988542110 11 11 1222322 222221 35799999
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHH
Q 026112 145 LPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARR 224 (243)
Q Consensus 145 TpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~ 224 (243)
|||+.+. ..++. +.++. +|++++|+|+..++..+...+++.+...++|.++++||+|.... +....
T Consensus 92 TPGHvDF--~~Ev~--------~aLr~---~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a-~~~~~ 157 (709)
T 4fn5_A 92 TPGHVDF--TIEVE--------RSLRV---LDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA-NFLRV 157 (709)
T ss_dssp CCSCTTC--HHHHH--------HHHHH---CSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC-CHHHH
T ss_pred CCCCccc--HHHHH--------HHHHH---hCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc-cHHHH
Confidence 9998762 12221 22222 99999999999999999999999999999999999999999754 46667
Q ss_pred HHHHHHHHhhCCC
Q 026112 225 AMQIEESLKANNS 237 (243)
Q Consensus 225 ~~~l~~~l~~~~~ 237 (243)
.+.+++.+.....
T Consensus 158 ~~ei~~~l~~~~~ 170 (709)
T 4fn5_A 158 VEQIKKRLGHTPV 170 (709)
T ss_dssp HHHHHHHHCSCEE
T ss_pred HHHhhhhccccee
Confidence 7778887765433
No 197
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.42 E-value=9.4e-14 Score=129.55 Aligned_cols=129 Identities=23% Similarity=0.266 Sum_probs=91.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccc----ccc------cCC------CCceEE---EEEEEeCCcEEEEeCCCCCCCc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGV----VRT------SDK------PGLTQT---INFFKLGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~----~~v------s~~------~gtT~~---~~~~~~~~~~~liDTpG~~~~~ 152 (243)
..+|+|+|+.++|||||..+|+..... ..+ .+. .|.|.. +.+.+.+..+.|+||||+.+.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF- 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF- 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST-
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH-
Confidence 358999999999999999998743210 011 111 122222 223345788999999998762
Q ss_pred cchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHH
Q 026112 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l 232 (243)
.....+.+..+|++++|+|+..++..+...+++.+...++|.++++||+|.... +.....+.+++.+
T Consensus 81 ------------~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a-~~~~~~~~i~~~l 147 (638)
T 3j25_A 81 ------------LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGI-DLSTVYQDIKEKL 147 (638)
T ss_dssp ------------HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSC-CSHHHHHHHHHTT
T ss_pred ------------HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccC-CHHHHHHHHHHHh
Confidence 112222223499999999999999999999999999999999999999998754 3455566666666
Q ss_pred hh
Q 026112 233 KA 234 (243)
Q Consensus 233 ~~ 234 (243)
..
T Consensus 148 ~~ 149 (638)
T 3j25_A 148 SA 149 (638)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 198
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.42 E-value=3.1e-13 Score=117.01 Aligned_cols=125 Identities=19% Similarity=0.143 Sum_probs=73.3
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccc-----ccccccCCCCceEE--------------------EEEE----------
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQT--------------------INFF---------- 134 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs~~~gtT~~--------------------~~~~---------- 134 (243)
.....|+++|++|+|||||+|.|++.. +...++.-+++|.. +...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 356799999999999999999997531 22222222222210 0000
Q ss_pred ------------EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhc
Q 026112 135 ------------KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS 202 (243)
Q Consensus 135 ------------~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~ 202 (243)
..+..+.++||||+.+.. . .. ...+|++++|+|+..+..... +.. ...
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~--~-------~~-------~~~aD~vl~Vvd~~~~~~~~~---l~~-~~~ 193 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSE--T-------EV-------ARMVDCFISLQIAGGGDDLQG---IKK-GLM 193 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHH--H-------HH-------HTTCSEEEEEECC------CC---CCH-HHH
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchH--H-------HH-------HHhCCEEEEEEeCCccHHHHH---HHH-hhh
Confidence 125689999999986511 0 11 134999999999865421111 100 112
Q ss_pred CCcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 203 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 203 ~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
+.|.++|+||+|+............+++.+..
T Consensus 194 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~ 225 (341)
T 2p67_A 194 EVADLIVINKDDGDNHTNVAIARHMYESALHI 225 (341)
T ss_dssp HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred cccCEEEEECCCCCChHHHHHHHHHHHHHHHh
Confidence 46889999999998765555555566655443
No 199
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.39 E-value=7.1e-13 Score=105.09 Aligned_cols=113 Identities=20% Similarity=0.226 Sum_probs=68.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe-CC--cEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-GT--KLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~-~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|++|||||||+|+|++........+..+++........ +. .+.+|||||...... +...+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~----------~~~~~ 98 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA----------ITSAY 98 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSC----------CCHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhh----------hhHHH
Confidence 479999999999999999999997421112222222222222222 32 456799999754211 11222
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
+. .++.+++|+|......... ..++..+.. ...|+++|+||+|+..
T Consensus 99 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 99 YR---GAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp HT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hh---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 22 2788999999875322122 234443432 3679999999999864
No 200
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.38 E-value=3.2e-12 Score=106.19 Aligned_cols=48 Identities=25% Similarity=0.225 Sum_probs=32.1
Q ss_pred CccEEEEEEeCCCC--CChhh-HHHHHHHH----hcCCcEEEEeecCCCCChHHH
Q 026112 174 SLKRVCLLIDTKWG--VKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 174 ~~d~v~~vvd~~~~--~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~~~~ 221 (243)
.+|++++|+|++.. .+... ..++..+. ..+.|+++|+||+|+......
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v 216 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI 216 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH
Confidence 48999999998764 33322 23343332 247999999999999775544
No 201
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.31 E-value=1.8e-12 Score=109.43 Aligned_cols=61 Identities=33% Similarity=0.610 Sum_probs=43.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~ 152 (243)
..++|+++|.||+|||||+|+|++. ....+++.+|+|++.+....+..+.++||||+..+.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPK 179 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEETTTEEEEECCCCCCSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcC-ceeecCCCCCeeeeeEEEEeCCCEEEEECcCcCCCC
Confidence 4579999999999999999999998 567899999999998877778899999999998754
No 202
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.28 E-value=1.6e-12 Score=114.09 Aligned_cols=88 Identities=23% Similarity=0.204 Sum_probs=47.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--------------------CCcEEEEeCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGF 150 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--------------------~~~~~liDTpG~~~ 150 (243)
...+|+++|.||+|||||+|+|++. . ..++++|+||.++..... +..+.+|||||+..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~-~-~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNS-Q-ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC-C-ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 4578999999999999999999998 4 478899999987644321 23499999999865
Q ss_pred CccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCC
Q 026112 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186 (243)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~ 186 (243)
..... ..+...++...+.+|++++|+|++.
T Consensus 99 ~as~~------~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 99 GAHNG------QGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp --------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccchh------hHHHHHHHHHHHhcCeEEEEEecCC
Confidence 32111 1111122333344999999999864
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.24 E-value=1.3e-11 Score=102.30 Aligned_cols=121 Identities=17% Similarity=0.185 Sum_probs=70.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHh-----cccccccccCCCC----------------ceEEEE-----------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALT-----RQWGVVRTSDKPG----------------LTQTIN----------------- 132 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~-----~~~~~~~vs~~~g----------------tT~~~~----------------- 132 (243)
..+.++++|.+|+|||||++.|+ +. +...+..-++ ++++..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~-~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNY-KVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTS-CEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCC-eEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 35678889999999999999998 54 3333332222 111100
Q ss_pred ------------EEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHH-H----
Q 026112 133 ------------FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-L---- 195 (243)
Q Consensus 133 ------------~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~-~---- 195 (243)
....+..+.+|||||..+.. .+..+.......... +++++++|+.......+.. .
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~-------~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~ 163 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETF-------LFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFA 163 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHH-------HHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccchh-------hhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHH
Confidence 00012479999999974310 011111112222345 8899999986544443321 1
Q ss_pred HHHHHhcCCcEEEEeecCCCCChHH
Q 026112 196 ISLMERSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 196 ~~~l~~~~~p~i~v~nK~D~~~~~~ 220 (243)
.......+.|+++|+||+|+....+
T Consensus 164 ~~~~~~~~~p~~iv~NK~D~~~~~~ 188 (262)
T 1yrb_A 164 LLIDLRLGATTIPALNKVDLLSEEE 188 (262)
T ss_dssp HHHHHHHTSCEEEEECCGGGCCHHH
T ss_pred HHHhcccCCCeEEEEeccccccccc
Confidence 1223345789999999999987654
No 204
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.20 E-value=7e-12 Score=101.22 Aligned_cols=107 Identities=9% Similarity=0.017 Sum_probs=63.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc----ccccccCCCCceEE----------EEEE-------------------EeC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQT----------INFF-------------------KLG 137 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~----~~~~vs~~~gtT~~----------~~~~-------------------~~~ 137 (243)
..+.|+++|.+|+|||||+|+|++.. +...+...++++.+ +... ..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 35799999999999999999998751 12223333332211 0000 013
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
..+.+|||+|.... +. ++. ...+.+++|+|+..+... ........+.|+++|+||+|+..
T Consensus 109 ~d~iiidt~G~~~~--~~------------~~~--~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~~ 168 (221)
T 2wsm_A 109 CDLLLIENVGNLIC--PV------------DFD--LGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALAE 168 (221)
T ss_dssp CSEEEEEEEEBSSG--GG------------GCC--CSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGHH
T ss_pred CCEEEEeCCCCCCC--Cc------------hhc--cccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCCc
Confidence 46788888884211 10 000 125788999998765321 11222334689999999999864
No 205
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.19 E-value=9.8e-12 Score=109.21 Aligned_cols=88 Identities=17% Similarity=0.201 Sum_probs=62.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE--eC------------------CcEEEEeCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LG------------------TKLCLVDLPGYGF 150 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~--~~------------------~~~~liDTpG~~~ 150 (243)
.+.+|+|+|.+|||||||+|+|++. ..+.++++|+||.++.... .+ ..+.++||||+..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~-~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKS-VLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHS-TTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC-CcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4679999999999999999999998 5458899999998764332 22 2589999999765
Q ss_pred Cccc-hHHHHHHHHHHHHHHhcccCccEEEEEEeCCC
Q 026112 151 AYAK-EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186 (243)
Q Consensus 151 ~~~~-~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~ 186 (243)
.... +.+.. .++.....+|.+++|+|+..
T Consensus 98 ~~s~~e~L~~-------~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGN-------AFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCH-------HHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHH-------HHHHHHHHHHHHHHHHhccc
Confidence 3222 21211 22222334899999999754
No 206
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.15 E-value=6.3e-11 Score=102.36 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
.+..|+++|++|||||||+|.|++
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999985
No 207
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.14 E-value=3.6e-10 Score=102.28 Aligned_cols=117 Identities=16% Similarity=0.234 Sum_probs=68.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHh------cccccccccC---CCCc--------eE-EEEEEE-----------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALT------RQWGVVRTSD---KPGL--------TQ-TINFFK----------------- 135 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~------~~~~~~~vs~---~~gt--------T~-~~~~~~----------------- 135 (243)
....|+++|.+||||||+++.|+ +. +...++. .++. ++ .+.++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~-kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGW-KTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999 44 3222221 0000 00 011111
Q ss_pred ---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcE-EEEee
Q 026112 136 ---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLT 211 (243)
Q Consensus 136 ---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~-i~v~n 211 (243)
.+..+.||||||.... ..........+.. . ..+|.+++|+|+..+.. .....+.+... .|+ .+|+|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~--~~~l~~el~~~~~-~----i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlN 248 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQ--EDSLFEEMLQVAN-A----IQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVT 248 (504)
T ss_dssp HHHTTCCEEEEEECCCCTT--CHHHHHHHHHHHH-H----HCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEE
T ss_pred HHHCCCcEEEEeCCCCccc--chhHHHHHHHHHh-h----hcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEe
Confidence 3568999999998642 1111111111111 1 14899999999987643 34444444443 675 89999
Q ss_pred cCCCCCh
Q 026112 212 KTDTVFP 218 (243)
Q Consensus 212 K~D~~~~ 218 (243)
|+|....
T Consensus 249 K~D~~~~ 255 (504)
T 2j37_W 249 KLDGHAK 255 (504)
T ss_dssp CTTSCCC
T ss_pred CCccccc
Confidence 9998754
No 208
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.13 E-value=2.1e-11 Score=101.68 Aligned_cols=59 Identities=27% Similarity=0.544 Sum_probs=43.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~ 152 (243)
.+++++|.||+|||||+|+|++. ....+++.+|+|+.......+..+.++||||+....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPGILYKN 158 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT-CC----------CCSCEEECTTSCEEESSCEECCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcc-cccccCCCCCCccceEEEEeCCCEEEEECCCcccCc
Confidence 69999999999999999999998 556788999999988877778889999999988653
No 209
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.08 E-value=1.4e-09 Score=96.13 Aligned_cols=115 Identities=19% Similarity=0.241 Sum_probs=71.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccccc---ccCCCCceEEEEEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~---vs~~~gtT~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
...++|+|++|||||||+|+|+|...... ......+|+....+.. ...+.++|+||+... ...+ ..++.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~--~~~~----~~~L~ 142 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST--NFPP----DTYLE 142 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGS--SCCH----HHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccch--HHHH----HHHHH
Confidence 45899999999999999999999521111 1111222332222222 246899999998642 1112 12222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
.. .....+..++ ++..+ ...++..+...+...+.|+++|+||.|+.
T Consensus 143 ~~--~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 143 KM--KFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp HT--TGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred Hc--CCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 21 1122355554 77654 46777888888888899999999999975
No 210
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.06 E-value=1.9e-10 Score=105.69 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=58.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCC----ceEEEEEEE------eCCcEEEEeCCCCCCCcc--chHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG----LTQTINFFK------LGTKLCLVDLPGYGFAYA--KEEVK 158 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~g----tT~~~~~~~------~~~~~~liDTpG~~~~~~--~~~~~ 158 (243)
+.++|+|+|.||+|||||+|+|+|.. ... +.++ +|+.+..+. .+..+.++||||+.+... .....
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~-~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~ 113 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKK-KGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDS 113 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS-SCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHH
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCC-Ccc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHH
Confidence 45789999999999999999999984 221 3333 444443331 356899999999986432 11111
Q ss_pred HHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHH
Q 026112 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM 199 (243)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l 199 (243)
..+ .+...+ ++ ++|+|+..++...+..++..+
T Consensus 114 ~~f--ala~ll-----ss--~lv~n~~~~i~~~dl~~l~~v 145 (592)
T 1f5n_A 114 WIF--ALAVLL-----SS--TFVYNSIGTINQQAMDQLYYV 145 (592)
T ss_dssp HHH--HHHHHH-----CS--EEEEEEESCSSHHHHHTTHHH
T ss_pred HHH--HHHHHh-----cC--eEEEECCCCccHHHHHHHHHH
Confidence 111 011111 22 466776666777776555443
No 211
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.99 E-value=3.6e-09 Score=98.10 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=49.2
Q ss_pred CcEEEEeCCCCCCC--cc-chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCC-hhhHHHHHHHHhcCCcEEEEeecC
Q 026112 138 TKLCLVDLPGYGFA--YA-KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERSQTKYQVVLTKT 213 (243)
Q Consensus 138 ~~~~liDTpG~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~-~~~~~~~~~l~~~~~p~i~v~nK~ 213 (243)
+.+.++|.||+... .+ +......+..++..|+... ..++++++.+..... .....+++.+...+.+.++|+||.
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~--~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~ 224 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQ--ETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKP 224 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSS--SCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcC--CCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecch
Confidence 56999999998753 11 2223445556666665432 355666666543322 333566677767789999999999
Q ss_pred CCCChH
Q 026112 214 DTVFPI 219 (243)
Q Consensus 214 D~~~~~ 219 (243)
|++...
T Consensus 225 Dlv~~g 230 (608)
T 3szr_A 225 DLVDKG 230 (608)
T ss_dssp GGSSSS
T ss_pred hhcCcc
Confidence 998654
No 212
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.81 E-value=1.6e-07 Score=83.39 Aligned_cols=120 Identities=16% Similarity=0.201 Sum_probs=69.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc-----ccccccC--C--------------CCce-------EEEE-E-------E-
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSD--K--------------PGLT-------QTIN-F-------F- 134 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs~--~--------------~gtT-------~~~~-~-------~- 134 (243)
...|+++|.+|+||||++..|+... ++..+.. + .+.. .+.. . .
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999988421 2111110 0 0110 0000 0 0
Q ss_pred EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCC
Q 026112 135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214 (243)
Q Consensus 135 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D 214 (243)
..+..+.|+||||.... ..........+. . ...+|.+++|+|+..+ .......+.+.....+..+|+||+|
T Consensus 180 ~~~~DvVIIDTaGrl~~--d~~lm~el~~i~-~----~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~~i~gVIlTKlD 250 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKE--DKALIEEMKQIS-N----VIHPHEVILVIDGTIG--QQAYNQALAFKEATPIGSIIVTKLD 250 (443)
T ss_dssp HTTCSEEEEECCCCSSC--CHHHHHHHHHHH-H----HHCCSEEEEEEEGGGG--GGHHHHHHHHHHSCTTEEEEEECCS
T ss_pred hCCCCEEEEECCCcccc--hHHHHHHHHHHH-H----hhcCceEEEEEeCCCc--hhHHHHHHHHHhhCCCeEEEEECCC
Confidence 01478999999997542 121211122211 1 1237899999998764 3344455555555556779999999
Q ss_pred CCChHH
Q 026112 215 TVFPID 220 (243)
Q Consensus 215 ~~~~~~ 220 (243)
......
T Consensus 251 ~~~~gG 256 (443)
T 3dm5_A 251 GSAKGG 256 (443)
T ss_dssp SCSSHH
T ss_pred Cccccc
Confidence 986543
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.76 E-value=6.8e-08 Score=85.91 Aligned_cols=117 Identities=16% Similarity=0.153 Sum_probs=69.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc-----cccccc------------------------CCCCceEEEE-E-E-----E
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTS------------------------DKPGLTQTIN-F-F-----K 135 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs------------------------~~~gtT~~~~-~-~-----~ 135 (243)
...|+++|.+|+||||+++.|.... +...++ +..+++++.. . . .
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998731 111111 1111333321 0 0 0
Q ss_pred eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCC-c-EEEEeecC
Q 026112 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-K-YQVVLTKT 213 (243)
Q Consensus 136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-p-~i~v~nK~ 213 (243)
.+..+.++||||.... .. ..+..+ . .......+|.+++|+|+..+. ......+.+.. .. | ..+|+||+
T Consensus 179 ~~~D~vIIDT~G~~~~--~~---~l~~~l-~-~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~~-~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE--EK---GLLEEM-K-QIKEITNPDEIILVIDGTIGQ--QAGIQAKAFKE-AVGEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCSS--HH---HHHHHH-H-HTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHHT-TSCSCEEEEEECS
T ss_pred hCCCEEEEcCCCCccc--cH---HHHHHH-H-HHHHHhcCcceeEEeeccccH--HHHHHHHHHhh-cccCCeEEEEeCC
Confidence 3678999999997641 11 111222 1 123333589999999987652 22333333333 35 6 88999999
Q ss_pred CCCCh
Q 026112 214 DTVFP 218 (243)
Q Consensus 214 D~~~~ 218 (243)
|....
T Consensus 249 D~~~~ 253 (432)
T 2v3c_C 249 DGSAK 253 (432)
T ss_dssp SSCST
T ss_pred CCccc
Confidence 98754
No 214
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.72 E-value=2.9e-08 Score=80.07 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=22.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..++|+++|.+|+|||||+++|+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999875
No 215
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.62 E-value=3e-07 Score=81.65 Aligned_cols=121 Identities=20% Similarity=0.198 Sum_probs=68.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-----cccccc----------------CCCCceE-------EEE--------EE
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTS----------------DKPGLTQ-------TIN--------FF 134 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs----------------~~~gtT~-------~~~--------~~ 134 (243)
....|+++|++|+||||++..|+... ++..++ ...+... +.. ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 34577899999999999999988421 111110 0011100 000 00
Q ss_pred -EeCCcEEEEeCCCCCCC-ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeec
Q 026112 135 -KLGTKLCLVDLPGYGFA-YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK 212 (243)
Q Consensus 135 -~~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK 212 (243)
..++.+.++||||.... .... .......+.. .. ..+.+++|+|+..+ .......+.+...-.+..+|+||
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~-lm~el~~i~~-~~----~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~~~gVIlTK 247 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETK-LLEEMKEMYD-VL----KPDDVILVIDASIG--QKAYDLASRFHQASPIGSVIITK 247 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTH-HHHHHHHHHH-HH----CCSEEEEEEEGGGG--GGGHHHHHHHHHHCSSEEEEEEC
T ss_pred HhcCCCEEEEECCCCccccCCHH-HHHHHHHHHH-hh----CCcceEEEEeCccc--hHHHHHHHHHhcccCCcEEEEec
Confidence 01568999999996430 1111 1111122111 11 26899999998764 34445555565544678899999
Q ss_pred CCCCChH
Q 026112 213 TDTVFPI 219 (243)
Q Consensus 213 ~D~~~~~ 219 (243)
+|.....
T Consensus 248 lD~~a~~ 254 (433)
T 3kl4_A 248 MDGTAKG 254 (433)
T ss_dssp GGGCSCH
T ss_pred ccccccc
Confidence 9987543
No 216
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.32 E-value=1e-06 Score=78.45 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+|+|++++|||||+|.|++.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3457899999999999999999974
No 217
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.32 E-value=1.9e-07 Score=79.34 Aligned_cols=58 Identities=33% Similarity=0.525 Sum_probs=36.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCC-------CceEEEEEEEeCCcEEEEeCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYGF 150 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~-------gtT~~~~~~~~~~~~~liDTpG~~~ 150 (243)
.+..++|+|++|||||||+|+|++... ..++.+. ++|+.......+ ...++||||+..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~G~I~~~~~~G~~tt~~~~~~~~~-~g~v~dtpg~~~ 236 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELG-LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSS 236 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEET-TEEEESSCSCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHhccccc-ccccceeeecCCCcccccHHHHhhcC-CEEEecCCCccc
Confidence 356899999999999999999998632 2233222 455544444433 468999999865
No 218
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.30 E-value=2.3e-06 Score=76.90 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=64.5
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccc-----ccccc-cCCCCc-----------eEEEEEEE-----------------
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRT-SDKPGL-----------TQTINFFK----------------- 135 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~-----~~~~v-s~~~gt-----------T~~~~~~~----------------- 135 (243)
..+-.|+|+|.+|||||||++.|.+.. .+... .+.... -+.+.++.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 345688999999999999999998742 11111 010000 00011110
Q ss_pred ---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc-ccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEee
Q 026112 136 ---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST-RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 211 (243)
Q Consensus 136 ---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~n 211 (243)
.+..+.++||+|.... ..........+..-.... ....+-+++|+|+..+ ......++.+...-....+|+|
T Consensus 371 a~~~~~DvVLIDTaGrl~~--~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~itgvIlT 446 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQN--KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVGLTGITLT 446 (503)
T ss_dssp HHHTTCSEEEECCCCSCCC--HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTCCSEEEEE
T ss_pred HHhcCCCEEEEeCCCccch--hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcCCCEEEEE
Confidence 1467999999997542 111111222222111111 1124678899998755 3333444444432223456789
Q ss_pred cCCCC
Q 026112 212 KTDTV 216 (243)
Q Consensus 212 K~D~~ 216 (243)
|.|..
T Consensus 447 KLD~t 451 (503)
T 2yhs_A 447 KLDGT 451 (503)
T ss_dssp CGGGC
T ss_pred cCCCc
Confidence 99964
No 219
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.30 E-value=5.8e-06 Score=69.90 Aligned_cols=119 Identities=20% Similarity=0.267 Sum_probs=65.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc-----ccccccCC---C-------------Cc-------eEEEE--------EEE
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDK---P-------------GL-------TQTIN--------FFK 135 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs~~---~-------------gt-------T~~~~--------~~~ 135 (243)
...|+++|++|+||||+++.|.+.. +...+..- + +. ..+.. ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4578899999999999999988421 11111100 0 00 00000 000
Q ss_pred -eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecC
Q 026112 136 -LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKT 213 (243)
Q Consensus 136 -~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~ 213 (243)
.++.+.++||||.......+........+ .. ...+|.+++|+|+..+ .......+.+.. ..| ..+|+||+
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i-~~----~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNI-YE----AIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHH-HH----HHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHH-HH----HhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCC
Confidence 25689999999975410111111111111 11 1138999999998643 333344444443 466 77899999
Q ss_pred CCCCh
Q 026112 214 DTVFP 218 (243)
Q Consensus 214 D~~~~ 218 (243)
|....
T Consensus 250 D~~~~ 254 (297)
T 1j8m_F 250 DGTAK 254 (297)
T ss_dssp GGCTT
T ss_pred CCCcc
Confidence 98754
No 220
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.25 E-value=2.4e-06 Score=73.44 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=41.8
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCC-------C-CChhhH---HHHHHHHh----
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-------G-VKPRDH---ELISLMER---- 201 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~-------~-~~~~~~---~~~~~l~~---- 201 (243)
+..+.+|||+|.. . +......|+. .++++++|+|.+. . -...-. .+++.+..
T Consensus 160 ~v~l~iwDtaGQe------~----~R~~w~~yy~---~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 160 DIPFHLIDVGGQR------S----ERKXWVSFFS---DVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp SCEEEEEECCSCH------H----HHHHHHTTSC---SCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred eeeeccccCCCcc------c----ccccHHHHhc---cCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 5689999999952 1 2233333443 4999999999762 0 011112 22222221
Q ss_pred cCCcEEEEeecCCCCC
Q 026112 202 SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 202 ~~~p~i~v~nK~D~~~ 217 (243)
.+.|+++++||+|+..
T Consensus 227 ~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFE 242 (340)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred CCCeEEEEEECchhhh
Confidence 3689999999999864
No 221
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.24 E-value=2.9e-06 Score=72.73 Aligned_cols=118 Identities=20% Similarity=0.222 Sum_probs=64.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccc-----ccccc-CC--CC---------ceEEEEEEE------------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----VVRTS-DK--PG---------LTQTINFFK------------------ 135 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~-----~~~vs-~~--~g---------tT~~~~~~~------------------ 135 (243)
.+-.|+++|++||||||+++.|++... +...+ +. ++ ....+.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 455789999999999999999997421 00000 00 00 000000110
Q ss_pred --eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecC
Q 026112 136 --LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT 213 (243)
Q Consensus 136 --~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~ 213 (243)
.+..+.++||+|..... ......+..+. +.+ ..|-.++++|+..+ ..-...++.+........+++||.
T Consensus 208 ~~~~~d~vliDtaG~~~~~--~~l~~eL~~i~-ral----~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETN--RNLMDEMKKIA-RVT----KPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp HHHTCSEEEEEECCSCCTT--TCHHHHHHHHH-HHH----CCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEECG
T ss_pred HhccchhhHHhhccchhHH--HHHHHHHHHHH-HHh----cCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 14578899999975321 11111222211 111 26889999997654 233344444443333457788999
Q ss_pred CCCC
Q 026112 214 DTVF 217 (243)
Q Consensus 214 D~~~ 217 (243)
|...
T Consensus 279 D~~a 282 (328)
T 3e70_C 279 DADA 282 (328)
T ss_dssp GGCS
T ss_pred CCcc
Confidence 9754
No 222
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.22 E-value=4.6e-06 Score=71.37 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=40.7
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCC-------CCCC-hhhH---HHHHHHHh----
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK-------WGVK-PRDH---ELISLMER---- 201 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~-------~~~~-~~~~---~~~~~l~~---- 201 (243)
+..+.+|||+|... +......|+. .++++++|+|.+ +... ..-. .+++.+..
T Consensus 166 ~v~l~iwDtgGQe~----------~R~~w~~yf~---~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 166 SVIFRMVDVGGQRS----------ERRKWIHCFE---NVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp TEEEEEEEECCSHH----------HHTTGGGGCS---SCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEcCCchh----------HHHHHHHHhC---CCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 56789999999521 1222233333 489999999754 1111 1112 23333322
Q ss_pred cCCcEEEEeecCCCCC
Q 026112 202 SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 202 ~~~p~i~v~nK~D~~~ 217 (243)
.+.|+++++||+|+..
T Consensus 233 ~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLE 248 (327)
T ss_dssp TTCEEEEEEECHHHHH
T ss_pred CCceEEEEEECchhhh
Confidence 3689999999999864
No 223
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.17 E-value=1e-05 Score=71.95 Aligned_cols=72 Identities=19% Similarity=0.178 Sum_probs=40.3
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT 215 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~ 215 (243)
++.+.||||||.... .+........+ .....++.+++|+|+..+ .......+.+.. ..+ .-+|+||+|.
T Consensus 183 ~~D~VIIDTpG~l~~--~~~l~~~L~~~-----~~~~~p~~vllVvda~~g--~~~~~~~~~f~~-~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHV--DEAMMDEIKQV-----HASINPVETLFVVDAMTG--QDAANTAKAFNE-ALPLTGVVLTKVDG 252 (433)
T ss_dssp TCSEEEEECCCCCTT--CHHHHHHHHHH-----HHHSCCSEEEEEEETTBC--TTHHHHHHHHHH-HSCCCCEEEECTTS
T ss_pred CCCEEEEECCCcccc--cHHHHHHHHHH-----HHhhcCcceeEEeecchh--HHHHHHHHHHhc-cCCCeEEEEecCCC
Confidence 568999999996531 11111111111 111237889999998755 222333333332 244 3478999998
Q ss_pred CCh
Q 026112 216 VFP 218 (243)
Q Consensus 216 ~~~ 218 (243)
...
T Consensus 253 ~~~ 255 (433)
T 2xxa_A 253 DAR 255 (433)
T ss_dssp SSC
T ss_pred Ccc
Confidence 643
No 224
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.16 E-value=9e-07 Score=76.66 Aligned_cols=59 Identities=34% Similarity=0.376 Sum_probs=38.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCC---C----ceEEEEEEEeCCcEEEEeCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP---G----LTQTINFFKLGTKLCLVDLPGYGF 150 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~---g----tT~~~~~~~~~~~~~liDTpG~~~ 150 (243)
+-.++|+|++|||||||+|.|++.......+.+. | +|+............++||||+.+
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 3488999999999999999999973202222221 2 444445555555567899999754
No 225
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.15 E-value=3.5e-06 Score=71.40 Aligned_cols=56 Identities=32% Similarity=0.395 Sum_probs=37.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCC-------CceEEEEEEEeCCcEEEEeCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYG 149 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~-------gtT~~~~~~~~~~~~~liDTpG~~ 149 (243)
+..++++|++|||||||+|+|+ ... ...+.+. .+|+..........-.++||||+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~-~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE-LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS 227 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC-CCCSCC---------CCCCEEEEEETTTEEEESSCCCS
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh-CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC
Confidence 4578999999999999999999 632 2233332 245444433333456789999986
No 226
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.11 E-value=4.5e-06 Score=70.80 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.|+++|++|||||||++.|.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3558899999999999999999864
No 227
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.10 E-value=1e-06 Score=76.37 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=41.5
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCC--------hhhH---HHHHHHHh----
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--------PRDH---ELISLMER---- 201 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~--------~~~~---~~~~~l~~---- 201 (243)
+..+.+|||+|... .+..|. .|+ ..++++++|+|.+..-+ ..-. .+++.+..
T Consensus 192 ~~~l~iwDt~GQe~------~r~~w~----~yf---~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 192 DLHFKMFDVGGQRS------ERKKWI----HCF---EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp TEEEEEEEECCSGG------GGGGGG----GGC---TTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeeEEEEeCCCchh------hhHHHH----HHH---hcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 56789999999643 111222 232 24899999999875211 1112 23333322
Q ss_pred cCCcEEEEeecCCCC
Q 026112 202 SQTKYQVVLTKTDTV 216 (243)
Q Consensus 202 ~~~p~i~v~nK~D~~ 216 (243)
.+.|+++|+||+|+.
T Consensus 259 ~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 259 TDTSIILFLNKKDLF 273 (353)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred cCCcEEEEEECcCch
Confidence 368999999999985
No 228
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.06 E-value=9.4e-06 Score=68.87 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+++|.+|+||||++..|.+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 3457899999999999999998864
No 229
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.04 E-value=3e-06 Score=71.77 Aligned_cols=58 Identities=34% Similarity=0.409 Sum_probs=36.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCC-------CceEEEEEEEeCCcEEEEeCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYGF 150 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~-------gtT~~~~~~~~~~~~~liDTpG~~~ 150 (243)
+-.++++|++|||||||+|+|.+... ...+.+. .+|+............++|+||+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~-~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~ 233 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN 233 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC-CC-------------CCCSCCEEECTTSCEEESSCSSTT
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc-ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCc
Confidence 45789999999999999999998732 2222222 2444333333333457899999764
No 230
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.02 E-value=5.2e-07 Score=71.78 Aligned_cols=63 Identities=19% Similarity=0.121 Sum_probs=38.3
Q ss_pred CCCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE-eCCcEEEEeCCC
Q 026112 85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LGTKLCLVDLPG 147 (243)
Q Consensus 85 ~~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~-~~~~~~liDTpG 147 (243)
...+...+..|+|+|++|||||||++.|++..........+.||+...... .|..+.++|.+.
T Consensus 12 ~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~ 75 (197)
T 3ney_A 12 ENLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEE 75 (197)
T ss_dssp ----CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHH
T ss_pred ccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHH
Confidence 334445667899999999999999999998742124455666776653221 133444444443
No 231
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.99 E-value=7e-05 Score=63.90 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
.....|+++|.+|+||||++..|.+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455789999999999999988875
No 232
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.89 E-value=4.1e-05 Score=64.14 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=38.9
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHH
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~ 221 (243)
........+|+|++|+|++.+.......+.+++ .++|.++|+||+|+.++...
T Consensus 16 ~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~ 68 (282)
T 1puj_A 16 EVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADAAVT 68 (282)
T ss_dssp HHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCHHHH
T ss_pred HHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCHHHH
Confidence 333344559999999999987666554554544 47899999999999986443
No 233
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.83 E-value=5.4e-05 Score=63.87 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+++|++|+||||++..|.+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3558999999999999999998753
No 234
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.77 E-value=0.00016 Score=63.95 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=20.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~ 114 (243)
...|+++|.+|+||||++..|.+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44688999999999999998885
No 235
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.71 E-value=0.0001 Score=62.23 Aligned_cols=71 Identities=13% Similarity=0.050 Sum_probs=46.7
Q ss_pred ccCccEEEEEEeCCCCC-Chhh-HHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccCC
Q 026112 172 RVSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~-~~~~-~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi~ 243 (243)
..++|++++|+|++++. +... ..++..+...++|+++|+||+|+.++.+.. ..+.+.+.....+..++++|
T Consensus 77 ~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~-~~~~~~~~~~~~g~~~~~~S 149 (302)
T 2yv5_A 77 VANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKK-ELERWISIYRDAGYDVLKVS 149 (302)
T ss_dssp EESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHH-HHHHHHHHHHHTTCEEEECC
T ss_pred HHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccH-HHHHHHHHHHHCCCeEEEEE
Confidence 34599999999998653 3332 345556666789999999999998765321 12334444444555566654
No 236
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.69 E-value=0.0005 Score=59.48 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.|+++|++|||||||++.|++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4557899999999999999999974
No 237
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.59 E-value=0.00056 Score=60.77 Aligned_cols=62 Identities=19% Similarity=0.184 Sum_probs=38.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc----------------ccccccc-CCCCceEEEEEEE--------eC--CcEEEE
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ----------------WGVVRTS-DKPGLTQTINFFK--------LG--TKLCLV 143 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~----------------~~~~~vs-~~~gtT~~~~~~~--------~~--~~~~li 143 (243)
+...|+|+|.+++|||+|+|.|++. ...-.++ ....+|+.+-.+. .+ ..+.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 4567889999999999999977631 0001111 2223555554332 12 359999
Q ss_pred eCCCCCCCc
Q 026112 144 DLPGYGFAY 152 (243)
Q Consensus 144 DTpG~~~~~ 152 (243)
||.|+.+..
T Consensus 146 DTEG~~d~~ 154 (457)
T 4ido_A 146 DTQGTFDSQ 154 (457)
T ss_dssp EECCBTCTT
T ss_pred eccCCCCcc
Confidence 999987654
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.57 E-value=3.8e-05 Score=59.70 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..++|+|++|||||||++.|.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457899999999999999999986
No 239
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.52 E-value=0.00026 Score=59.68 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=35.8
Q ss_pred cCccEEEEEEeCCCCC-Chhh-HHHHHHHHhcCCcEEEEeecCCCCChHHH
Q 026112 173 VSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~-~~~~-~~~~~~l~~~~~p~i~v~nK~D~~~~~~~ 221 (243)
..+|++++|+|++.+. .... ..++..+...++|+++|+||+|+.+....
T Consensus 83 ~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v 133 (301)
T 1u0l_A 83 ANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDL 133 (301)
T ss_dssp ESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHH
T ss_pred ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhH
Confidence 3499999999988653 2222 34555556668999999999999876543
No 240
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.50 E-value=0.0011 Score=55.77 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=21.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..++++|++|+||||++..|++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3447889999999999999988863
No 241
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.43 E-value=0.00034 Score=59.22 Aligned_cols=68 Identities=13% Similarity=0.076 Sum_probs=42.8
Q ss_pred ccCccEEEEEEeCCCCCChhhHHHHHHH---HhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccc
Q 026112 172 RVSLKRVCLLIDTKWGVKPRDHELISLM---ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~~~~~~~l---~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~ 240 (243)
..++|.+++|+|+..+....+ .+.+++ ...++|.++|+||+|+.++.+.....+.+.+.+...+..++
T Consensus 84 ~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 84 ICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp EECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 455999999999986544443 344444 45689999999999999875421223334444443343333
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.38 E-value=7.2e-05 Score=59.12 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..++|+|++|||||||++.|++.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347899999999999999999985
No 243
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.36 E-value=9.2e-05 Score=57.66 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=21.3
Q ss_pred EEEEecCCCCchhHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~ 116 (243)
+++++|++|||||||++.|++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999874
No 244
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.34 E-value=8.1e-05 Score=61.66 Aligned_cols=50 Identities=10% Similarity=0.026 Sum_probs=35.4
Q ss_pred cCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHH
Q 026112 173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAM 226 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~ 226 (243)
..+|+|++|+|++.+.......+. ++ ++|.++|+||+|+.++.......+
T Consensus 20 ~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~~~~~~~~~ 69 (262)
T 3cnl_A 20 RLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADEKTTKKWVE 69 (262)
T ss_dssp TTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCHHHHHHHHH
T ss_pred hhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCHHHHHHHHH
Confidence 449999999999876555432222 22 899999999999998654433333
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.28 E-value=0.00014 Score=57.71 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|++..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45578999999999999999999863
No 246
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.28 E-value=0.00015 Score=57.01 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..++|+|++|||||||++.|++.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 457899999999999999999986
No 247
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.28 E-value=0.0001 Score=57.89 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=26.2
Q ss_pred EEEecCCCCchhHHHHHHhcccccccccCCCCceEEE
Q 026112 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI 131 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~ 131 (243)
|+|+|++|||||||++.|+........-..+-|||..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 7899999999999999998763212333445556543
No 248
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.26 E-value=0.00016 Score=57.44 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+..|+|+|++|||||||++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35678999999999999999999874
No 249
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.25 E-value=0.00011 Score=57.39 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=20.4
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.++|+|++|||||||++.|++.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999999976
No 250
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.25 E-value=0.0015 Score=51.06 Aligned_cols=64 Identities=9% Similarity=-0.053 Sum_probs=43.3
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhc-----CCcEEEEee
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLT 211 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-----~~p~i~v~n 211 (243)
.+.+.++|||+... .. ....+.. +|.+++++..+..- ..-..+++.+... +.++.+|+|
T Consensus 75 ~yD~viiD~~~~~~----~~----~~~~l~~-------ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N 138 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS----VI----TSAAVMV-------SDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLIT 138 (206)
T ss_dssp TSSEEEEECCSSSS----HH----HHHHHHH-------CSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEEC
T ss_pred CCCEEEEECCCCCC----HH----HHHHHHH-------CCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 46899999999642 10 0111211 89999999877544 4455667777654 357899999
Q ss_pred cCCCC
Q 026112 212 KTDTV 216 (243)
Q Consensus 212 K~D~~ 216 (243)
++|..
T Consensus 139 ~~~~~ 143 (206)
T 4dzz_A 139 RKIEM 143 (206)
T ss_dssp SBCTT
T ss_pred ccCCC
Confidence 99964
No 251
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.23 E-value=0.00017 Score=58.07 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|++..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45688999999999999999999873
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.22 E-value=0.00016 Score=58.08 Aligned_cols=26 Identities=23% Similarity=0.558 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|++..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45578999999999999999999863
No 253
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.22 E-value=0.00016 Score=57.37 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|+|++|||||||++.|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999986
No 254
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.20 E-value=0.0002 Score=58.23 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45589999999999999999999863
No 255
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.18 E-value=0.0002 Score=55.66 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+++|++|||||||++.|++.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3457899999999999999999886
No 256
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.15 E-value=0.0004 Score=60.30 Aligned_cols=71 Identities=8% Similarity=-0.119 Sum_probs=41.1
Q ss_pred HHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH-HHHHHHHHHHHHhhCCC
Q 026112 162 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNS 237 (243)
Q Consensus 162 ~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~-~~~~~~~l~~~l~~~~~ 237 (243)
..++..+... ++++++|+|+++.......++.+.+. +.|+++|+||+|+.+... .....+.++..+...+.
T Consensus 62 ~~~L~~~~~~---~~lil~VvD~~d~~~s~~~~l~~~l~--~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~ 133 (369)
T 3ec1_A 62 LSMLHRIGES---KALVVNIVDIFDFNGSFIPGLPRFAA--DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGL 133 (369)
T ss_dssp HHHHHHHHHH---CCEEEEEEETTCSGGGCCSSHHHHCT--TSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhhcc---CcEEEEEEECCCCCCchhhHHHHHhC--CCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCC
Confidence 3444444333 78999999998653222223333322 689999999999986532 12223334444555444
No 257
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.11 E-value=0.00023 Score=57.49 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999999863
No 258
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.09 E-value=0.00028 Score=53.84 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=22.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|+.|||||||++.|++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999999986
No 259
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.09 E-value=0.0003 Score=57.26 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|+|..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45589999999999999999999973
No 260
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.08 E-value=0.0022 Score=50.86 Aligned_cols=66 Identities=6% Similarity=0.010 Sum_probs=42.0
Q ss_pred CCcEEEEeCCCC-CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhc-CCcEEEEeecCC
Q 026112 137 GTKLCLVDLPGY-GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTKYQVVLTKTD 214 (243)
Q Consensus 137 ~~~~~liDTpG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-~~p~i~v~nK~D 214 (243)
.+.+.++|||+. ... . ....+. .+|.+++++..+..-......+++.+... +.++.+|+|++|
T Consensus 67 ~yD~viiD~p~~~~~~---~---------~~~~l~---~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~ 131 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE---D---------LEALAD---GCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIP 131 (209)
T ss_dssp GCSEEEEEEECCCSSS---H---------HHHHHH---TSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBC
T ss_pred cCCEEEEeCCCCcCcH---H---------HHHHHH---HCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecC
Confidence 468999999996 431 1 111111 28999999876532112223556666653 678999999999
Q ss_pred CCC
Q 026112 215 TVF 217 (243)
Q Consensus 215 ~~~ 217 (243)
...
T Consensus 132 ~~~ 134 (209)
T 3cwq_A 132 PYP 134 (209)
T ss_dssp CTT
T ss_pred Ccc
Confidence 764
No 261
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.07 E-value=0.00032 Score=58.04 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|+|-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45588999999999999999999963
No 262
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.06 E-value=0.00056 Score=59.38 Aligned_cols=52 Identities=13% Similarity=0.059 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHh--cCCcEEEEeecCCCCChH
Q 026112 161 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER--SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 161 ~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~--~~~p~i~v~nK~D~~~~~ 219 (243)
+..++..+... ++++++|+|+++. ...+...+.. .+.|+++|+||+|+.+..
T Consensus 59 f~~~l~~i~~~---~~~il~VvD~~d~----~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 59 FLRILNGIGKS---DALVVKIVDIFDF----NGSWLPGLHRFVGNNKVLLVGNKADLIPKS 112 (368)
T ss_dssp HHHHHHHHHHS---CCEEEEEEETTSH----HHHCCTTHHHHSSSSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHhcc---CcEEEEEEECCCC----cccHHHHHHHHhCCCcEEEEEEChhcCCcc
Confidence 44455555443 7899999999753 1222222222 268999999999998653
No 263
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.05 E-value=0.0002 Score=62.06 Aligned_cols=67 Identities=18% Similarity=0.139 Sum_probs=39.3
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC--------Chhh---HHHHHHHHh----
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--------KPRD---HELISLMER---- 201 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~--------~~~~---~~~~~~l~~---- 201 (243)
+..+.+|||+|... . ......|+ ..++++++|+|.+.-- .... ..+++.+..
T Consensus 200 ~~~l~i~Dt~Gq~~------~----r~~w~~~f---~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 200 NVPFKMVDVGGQRS------E----RKRWFECF---DSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp TEEEEEEEECC-----------------CTTSC---TTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeEEEEEeccchhh------h----hhhHHHHh---CCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 56789999999632 1 11222222 3489999999987510 0111 223333322
Q ss_pred cCCcEEEEeecCCCC
Q 026112 202 SQTKYQVVLTKTDTV 216 (243)
Q Consensus 202 ~~~p~i~v~nK~D~~ 216 (243)
.+.|+++|+||+|+.
T Consensus 267 ~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 267 SNVSIILFLNKTDLL 281 (362)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred CCCCEEEEEEChhhh
Confidence 368999999999986
No 264
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.04 E-value=0.0003 Score=57.45 Aligned_cols=23 Identities=22% Similarity=0.305 Sum_probs=21.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
-.++++|++|||||||++.|+|-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999986
No 265
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.04 E-value=0.00031 Score=55.61 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|+|++|||||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999986
No 266
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.03 E-value=0.00033 Score=57.22 Aligned_cols=25 Identities=44% Similarity=0.514 Sum_probs=22.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|||||||++.|+|-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4558899999999999999999986
No 267
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.02 E-value=0.00038 Score=57.66 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|+|-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45588999999999999999999963
No 268
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.02 E-value=0.00031 Score=57.88 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45588999999999999999999863
No 269
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.02 E-value=0.0004 Score=54.52 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=22.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|+|++||||||+++.|.+.
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3458999999999999999999886
No 270
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.01 E-value=0.00032 Score=58.47 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|||||||++.|+|-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3458899999999999999999996
No 271
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.01 E-value=0.00039 Score=57.39 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|+|-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45589999999999999999999973
No 272
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.00 E-value=0.0004 Score=57.28 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|+|-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45588999999999999999999973
No 273
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.00 E-value=0.00034 Score=56.67 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34588999999999999999999973
No 274
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.00 E-value=0.00033 Score=58.10 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|||||||++.|+|-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3558899999999999999999996
No 275
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.00 E-value=0.00034 Score=57.35 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|+|-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34588999999999999999999973
No 276
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.99 E-value=0.00031 Score=56.39 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=22.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
+-.++++|++|||||||++.|+|-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4478999999999999999999963
No 277
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.99 E-value=0.00029 Score=61.87 Aligned_cols=68 Identities=10% Similarity=0.069 Sum_probs=41.7
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-------C-Chhh---HHHHHHHHh----
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------V-KPRD---HELISLMER---- 201 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~-~~~~---~~~~~~l~~---- 201 (243)
+..+.+|||+|... . ......|+. .++++++|+|.+.- . .... ..+++.+..
T Consensus 216 ~v~l~iwDtaGQe~------~----r~~w~~yf~---~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 216 KVNFHMFDVGGQRD------E----RRKWIQCFN---DVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282 (402)
T ss_dssp TEEEEEEEECCSGG------G----GGGGGGGTT---TCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred Cccceecccchhhh------h----hhhhHhhcc---CCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence 56789999999643 1 112223333 38999999998750 0 1111 233333332
Q ss_pred cCCcEEEEeecCCCCC
Q 026112 202 SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 202 ~~~p~i~v~nK~D~~~ 217 (243)
.+.|+++|+||+|+..
T Consensus 283 ~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 283 RTISVILFLNKQDLLA 298 (402)
T ss_dssp SSCCEEEEEECHHHHH
T ss_pred CCCeEEEEEEChhhhh
Confidence 2579999999999853
No 278
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.98 E-value=0.00032 Score=55.98 Aligned_cols=24 Identities=21% Similarity=0.077 Sum_probs=21.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+-.++++|++|||||||++.|++.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999986
No 279
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.98 E-value=0.00026 Score=61.14 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=39.6
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCC-------C-CChhhH---HHHHHHHh----
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-------G-VKPRDH---ELISLMER---- 201 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~-------~-~~~~~~---~~~~~l~~---- 201 (243)
...+.+|||+|...- ......|+. .++++++|+|.+. . -..... .+++.+..
T Consensus 182 ~v~l~iwDtaGQe~~----------r~~~~~y~~---~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNE----------RRKWIHLFE---GVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCSTTG----------GGGTGGGCT---TEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCchhh----------hHHHHHHhC---CCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence 357999999996431 112222332 3899999999751 1 111112 23333322
Q ss_pred cCCcEEEEeecCCCC
Q 026112 202 SQTKYQVVLTKTDTV 216 (243)
Q Consensus 202 ~~~p~i~v~nK~D~~ 216 (243)
.+.|+++|+||+|+.
T Consensus 249 ~~~piiLvgNK~DL~ 263 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIF 263 (354)
T ss_dssp SSCEEEEEEECHHHH
T ss_pred CCCeEEEEEECcchh
Confidence 368999999999985
No 280
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.98 E-value=0.00043 Score=57.55 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|+|-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45588999999999999999999963
No 281
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.98 E-value=0.00031 Score=54.01 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~ 114 (243)
+-.++++|++|||||||++.+.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 45789999999999999997654
No 282
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.97 E-value=0.00042 Score=58.63 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|+|||||++.|++-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4568999999999999999999975
No 283
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.97 E-value=0.00044 Score=57.32 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|||||||++.|+|-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4558899999999999999999996
No 284
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.97 E-value=0.00037 Score=56.82 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34588999999999999999999963
No 285
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.97 E-value=0.00039 Score=57.50 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+-.++|+|++|||||||++.|++.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh
Confidence 458999999999999999999986
No 286
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.97 E-value=0.00044 Score=54.40 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=22.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|+|++|||||||++.|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999874
No 287
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.94 E-value=0.0004 Score=56.99 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|..
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34578999999999999999999973
No 288
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.94 E-value=0.00042 Score=56.87 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|||||||++.|+|-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458899999999999999999995
No 289
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.93 E-value=0.00049 Score=56.99 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45588999999999999999999863
No 290
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.92 E-value=0.00046 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999886
No 291
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.91 E-value=0.00057 Score=52.36 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+++|++||||||+.+.|.+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3557899999999999999999764
No 292
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.90 E-value=0.00045 Score=57.68 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|+|..
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34588999999999999999999963
No 293
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.89 E-value=0.0004 Score=58.79 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=23.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|++-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45689999999999999999999863
No 294
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.89 E-value=0.00058 Score=52.94 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=22.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+.++|+|++|+|||||++.|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 568999999999999999999975
No 295
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.88 E-value=0.00048 Score=56.68 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999973
No 296
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.86 E-value=0.00043 Score=55.74 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=17.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHh-cc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALT-RQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~-~~ 115 (243)
.+..++|+|++|||||||++.|. +.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 45689999999999999999999 65
No 297
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.83 E-value=0.00059 Score=53.87 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=22.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|+|++|||||||.+.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3567899999999999999999875
No 298
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.82 E-value=0.00059 Score=52.98 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.++++|++|||||||++.|.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 5789999999999999999864
No 299
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.81 E-value=0.00062 Score=57.77 Aligned_cols=26 Identities=35% Similarity=0.326 Sum_probs=23.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..+..|+|+|++|||||||++.|.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 35668999999999999999999986
No 300
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.81 E-value=0.00069 Score=56.89 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|+|..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45589999999999999999999973
No 301
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.81 E-value=0.00066 Score=53.38 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=22.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|+|++||||||+.+.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999886
No 302
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.81 E-value=0.0006 Score=53.56 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=20.7
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.++++|++|+|||||++.|++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999999986
No 303
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.78 E-value=0.00037 Score=53.91 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=21.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|+|++|||||||++.|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999986
No 304
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.77 E-value=0.0053 Score=50.36 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+.|+++|.|||||||+.+.|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999999864
No 305
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.75 E-value=0.0008 Score=55.66 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=22.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+-.++++|++|||||||++.|+|.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458899999999999999999987
No 306
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.75 E-value=0.0086 Score=48.82 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+++|.|||||||+.+.|...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999999876
No 307
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.75 E-value=0.00084 Score=58.14 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|.+-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 45588999999999999999999963
No 308
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.73 E-value=0.00087 Score=54.48 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=20.4
Q ss_pred CCEEEEecCCCCchhHHHHHHh
Q 026112 92 LPEIAFAGRSNVGKSSMLNALT 113 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~ 113 (243)
...|+|+|++|||||||++.|+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999999
No 309
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.73 E-value=0.00086 Score=57.95 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34578999999999999999999963
No 310
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.71 E-value=0.00085 Score=54.57 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|+|++|||||||++.|.+.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999885
No 311
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.70 E-value=0.0017 Score=54.74 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|||||||++.|++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4558899999999999999999974
No 312
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.68 E-value=0.0086 Score=54.15 Aligned_cols=24 Identities=13% Similarity=0.356 Sum_probs=21.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...++|.|++|+||||+..++...
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999876
No 313
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.68 E-value=0.00081 Score=58.19 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
+-.++|+|++|||||||+++|++..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4589999999999999999999863
No 314
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.67 E-value=0.001 Score=57.52 Aligned_cols=26 Identities=31% Similarity=0.370 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34578999999999999999999963
No 315
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.0096 Score=52.74 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhHHHHHHhccc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.-|++.|+||+|||+|..++++..
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999999873
No 316
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.66 E-value=0.00089 Score=53.33 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+-.++|+|++|||||||++.|++.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 447899999999999999999984
No 317
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.65 E-value=0.0011 Score=57.47 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34578999999999999999999963
No 318
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.65 E-value=0.00092 Score=51.49 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..++++|++|+|||||++++++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999886
No 319
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.65 E-value=0.00086 Score=57.94 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.8
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|+|+|++|||||||+++|++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 8999999999999999999885
No 320
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.64 E-value=0.001 Score=53.09 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|+|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 321
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.64 E-value=0.0011 Score=57.76 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34578999999999999999999963
No 322
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.63 E-value=0.001 Score=50.09 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=22.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..++++|++|+|||||++++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999986
No 323
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.63 E-value=0.00093 Score=57.11 Aligned_cols=24 Identities=13% Similarity=0.351 Sum_probs=21.9
Q ss_pred CEEEEecCCCCchhHHHHHHhccc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
-.++++|++|||||||+++|++..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999873
No 324
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.62 E-value=0.00074 Score=57.33 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=22.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+.++|+|+.|||||||+|.|++.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 568899999999999999999975
No 325
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.62 E-value=0.00096 Score=57.59 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34578999999999999999999863
No 326
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.025 Score=47.89 Aligned_cols=25 Identities=8% Similarity=0.090 Sum_probs=22.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..+.+.|.|+||+|||++++.++..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999876
No 327
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.61 E-value=0.0012 Score=57.38 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34578999999999999999999863
No 328
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.59 E-value=0.0013 Score=51.68 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+++|++||||||+.+.|.+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999864
No 329
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.59 E-value=0.0012 Score=50.00 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=18.8
Q ss_pred CEEEEecCCCCchhHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNAL 112 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L 112 (243)
+.|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 330
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.025 Score=49.98 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.-|++.|+||+|||+|..++++.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999987
No 331
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.57 E-value=0.025 Score=46.35 Aligned_cols=24 Identities=17% Similarity=0.437 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...++|.|+||+|||+|..++...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 457899999999999999999876
No 332
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.56 E-value=0.0012 Score=50.00 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|+|.+||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999865
No 333
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.56 E-value=0.00099 Score=57.36 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34578999999999999999999963
No 334
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.55 E-value=0.0012 Score=53.29 Aligned_cols=24 Identities=13% Similarity=0.315 Sum_probs=20.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
.+-.++++|++|||||||++.|++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 345789999999999999999883
No 335
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.55 E-value=0.011 Score=51.88 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+++|.+||||||+.+.|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456788999999999999999876
No 336
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.55 E-value=0.0011 Score=57.51 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34478999999999999999999963
No 337
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.53 E-value=0.0033 Score=50.24 Aligned_cols=73 Identities=10% Similarity=0.052 Sum_probs=32.3
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCC-hhhHHH---HHHHHh----cCCcEEEEe
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHEL---ISLMER----SQTKYQVVL 210 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~-~~~~~~---~~~l~~----~~~p~i~v~ 210 (243)
++....+||-.+..+++.++..|.. |+.. +|++|||||+++.-. +...++ ...+.. .+.|++|..
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~----Yy~~---TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlA 169 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQK----VCEV---VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLS 169 (227)
T ss_dssp --------------------CCHHH----HHHH---CSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEE
T ss_pred hcccccCCCccccCcHHHHHHHHHH----HhcC---CCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEe
Confidence 5566677763222234444445544 4443 899999999876421 122233 333322 367999999
Q ss_pred ecC-CCCCh
Q 026112 211 TKT-DTVFP 218 (243)
Q Consensus 211 nK~-D~~~~ 218 (243)
||. |+...
T Consensus 170 NKqqDlp~A 178 (227)
T 3l82_B 170 CISQGDVKR 178 (227)
T ss_dssp EESSTTSCB
T ss_pred CCCcCccCC
Confidence 995 67543
No 338
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0011 Score=59.16 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..++|+|++|||||||++.|++-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 5679999999999999999999986
No 339
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.53 E-value=0.0015 Score=53.49 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALT 113 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~ 113 (243)
.+..|+|+|++||||||+.+.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999999
No 340
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.53 E-value=0.0012 Score=57.41 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+-.|+|+|++|||||||+++|++.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 447999999999999999999985
No 341
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.53 E-value=0.001 Score=57.45 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
+-+++|+|++|||||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999863
No 342
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.52 E-value=0.0013 Score=51.60 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.3
Q ss_pred CEEEEecCCCCchhHHHHHHhc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~ 114 (243)
..|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 343
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.52 E-value=0.0013 Score=55.53 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=22.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|+|++|||||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999885
No 344
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.51 E-value=0.0015 Score=51.51 Aligned_cols=25 Identities=24% Similarity=0.415 Sum_probs=22.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|+|.+||||||+.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999999886
No 345
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.51 E-value=0.0099 Score=51.26 Aligned_cols=67 Identities=12% Similarity=0.036 Sum_probs=40.3
Q ss_pred cCccEEEEEEeCCCCCChhhHHHHHHH---HhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 173 VSLKRVCLLIDTKWGVKPRDHELISLM---ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l---~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
.++|.+++| |+..+. .....+-+++ ...++|.++|+||+|+.++... ...+.+...+...+..++++
T Consensus 129 anvD~v~iv-~a~~P~-~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~-~~~~~~~~~y~~~G~~v~~~ 198 (358)
T 2rcn_A 129 ANIDQIVIV-SAILPE-LSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGM-DFVNEQMDIYRNIGYRVLMV 198 (358)
T ss_dssp ECCCEEEEE-EESTTT-CCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHH-HHHHHHHHHHHTTTCCEEEC
T ss_pred hcCCEEEEE-EeCCCC-CCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhH-HHHHHHHHHHHhCCCcEEEE
Confidence 458888866 444332 2222333443 4568999999999999987542 22344455556666555544
No 346
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.50 E-value=0.051 Score=43.86 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|.|+||+|||+|..++...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999876
No 347
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.49 E-value=0.0015 Score=52.59 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=22.9
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..+..|+|.|..|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34668999999999999999999875
No 348
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.49 E-value=0.0015 Score=57.04 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=22.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|||||||++.|+|-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4558899999999999999999986
No 349
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.48 E-value=0.0016 Score=51.11 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|+|.+||||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999765
No 350
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.48 E-value=0.0013 Score=59.51 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
-.++|+|++|||||||+|+|++.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999986
No 351
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.47 E-value=0.00093 Score=57.65 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34578999999999999999999963
No 352
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.46 E-value=0.0015 Score=51.42 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+++|.+|||||||++.|.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999874
No 353
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.46 E-value=0.002 Score=49.87 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999775
No 354
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.43 E-value=0.0047 Score=51.59 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=21.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+++|+|||||||+.+.|...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999765
No 355
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.43 E-value=0.0015 Score=51.33 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+++|++||||||+.+.|.+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 46899999999999999999873
No 356
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.42 E-value=0.00096 Score=59.70 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+++|.+|+||||+.+.|...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3458899999999999999999875
No 357
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.014 Score=51.17 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.5
Q ss_pred CEEEEecCCCCchhHHHHHHhccc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.-|++.|+||+|||+|..++++..
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHhh
Confidence 358999999999999999999873
No 358
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.41 E-value=0.0034 Score=52.06 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=20.3
Q ss_pred EEEecCCCCchhHHHHHHhcc
Q 026112 95 IAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~ 115 (243)
++++|++|+|||||+++|++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999987
No 359
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.39 E-value=0.0016 Score=57.43 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=21.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+-.|+|+|++|||||||+++|++.
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 347899999999999999999986
No 360
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.38 E-value=0.0021 Score=49.13 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+++|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999875
No 361
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.38 E-value=0.002 Score=49.62 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+.++|+|.+|+|||||++.|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998864
No 362
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.37 E-value=0.0019 Score=50.40 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.2
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999874
No 363
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.35 E-value=0.0039 Score=52.28 Aligned_cols=65 Identities=8% Similarity=0.118 Sum_probs=37.0
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHh----cCCcEE-EEee
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER----SQTKYQ-VVLT 211 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~----~~~p~i-~v~n 211 (243)
.+.+.++|||+....... ......+|.+++|+.....-...-..+++.+.. .+.+++ +|+|
T Consensus 156 ~yD~ViiD~p~~~~~~~~--------------~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N 221 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGGF--------------AAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVAN 221 (307)
T ss_dssp SCSEEEEEECCSSCCGGG--------------GGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEE
T ss_pred cCCEEEEeCCCccchHHH--------------HHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEe
Confidence 357899999885431100 011123899999987653211122345566654 345544 8999
Q ss_pred cCCC
Q 026112 212 KTDT 215 (243)
Q Consensus 212 K~D~ 215 (243)
+++.
T Consensus 222 ~~~~ 225 (307)
T 3end_A 222 RSRA 225 (307)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 9994
No 364
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.32 E-value=0.0021 Score=54.64 Aligned_cols=25 Identities=32% Similarity=0.248 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+|+|++|||||||++.|.+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998765
No 365
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.30 E-value=0.0022 Score=49.57 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+++|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999765
No 366
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.30 E-value=0.048 Score=42.29 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+++.|++|+|||+|...+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999875
No 367
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.30 E-value=0.0023 Score=49.30 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=20.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|.|.+||||||+.+.|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999764
No 368
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.29 E-value=0.0024 Score=53.56 Aligned_cols=25 Identities=24% Similarity=0.126 Sum_probs=22.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+|+|.+|||||||.+.|.+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998875
No 369
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.29 E-value=0.0021 Score=48.99 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=19.7
Q ss_pred EEEEecCCCCchhHHHHHHhc
Q 026112 94 EIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~ 114 (243)
.|+++|.|||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 688999999999999999987
No 370
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.28 E-value=0.0028 Score=48.98 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=22.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+++|.+||||||+.+.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999875
No 371
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.035 Score=48.91 Aligned_cols=24 Identities=21% Similarity=0.327 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhHHHHHHhccc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.-|++.|+||+|||+|..++++..
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHHh
Confidence 468999999999999999999873
No 372
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.26 E-value=0.01 Score=49.51 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.-+++.|+||+|||+|..+++..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35667799999999999999886
No 373
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.24 E-value=0.0026 Score=48.94 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+.|+++|.+||||||+.+.|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999764
No 374
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.23 E-value=0.0022 Score=49.50 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=20.3
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|+|.|.+||||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 375
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.23 E-value=0.003 Score=49.30 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..|+|+|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 376
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.042 Score=48.86 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
..-|++.|+||+|||+|..++++..
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3468999999999999999999873
No 377
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.22 E-value=0.0021 Score=49.54 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..|+++|.+||||||+.+.|...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999853
No 378
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.19 E-value=0.0023 Score=52.11 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=20.1
Q ss_pred EEEecCCCCchhHHHHHHhcc
Q 026112 95 IAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~ 115 (243)
++++|++|+|||||++++.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999986
No 379
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.17 E-value=0.0026 Score=48.84 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=19.2
Q ss_pred EEEEecCCCCchhHHHHHHhc
Q 026112 94 EIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~ 114 (243)
..+|+|++|+|||||+.+|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999875
No 380
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.16 E-value=0.0027 Score=58.31 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 45689999999999999999999863
No 381
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.16 E-value=0.0029 Score=57.61 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|||||||++.|+|.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4558999999999999999999996
No 382
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.15 E-value=0.0029 Score=48.55 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..|+++|.+||||||+.+.|.+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999875
No 383
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.14 E-value=0.003 Score=48.45 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=21.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+.|+++|.+|+||||+.+.|...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 384
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.13 E-value=0.003 Score=49.52 Aligned_cols=24 Identities=38% Similarity=0.292 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999999875
No 385
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.12 E-value=0.015 Score=48.24 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...+++.|+||+|||+|.+++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457899999999999999999886
No 386
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.12 E-value=0.0026 Score=58.58 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=23.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45689999999999999999999974
No 387
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.11 E-value=0.025 Score=47.75 Aligned_cols=24 Identities=29% Similarity=0.628 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|.|++|+|||+|..++...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 356899999999999999999765
No 388
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.10 E-value=0.0035 Score=48.52 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|+|.+||||||+.+.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999754
No 389
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.10 E-value=0.0036 Score=49.19 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|.|.+||||||+.+.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999864
No 390
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.10 E-value=0.003 Score=58.02 Aligned_cols=26 Identities=38% Similarity=0.570 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|-.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999863
No 391
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.016 Score=51.26 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=22.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
..-|++.|+||+|||+|..++++..
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999873
No 392
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.08 E-value=0.033 Score=47.45 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....++|.|++|+|||||++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999875
No 393
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.07 E-value=0.0028 Score=56.82 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
-.++|+|++|||||||++.|++-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 47899999999999999999974
No 394
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.06 E-value=0.0031 Score=57.48 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|+.|||||||++.|+|.
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3447899999999999999999996
No 395
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.06 E-value=0.003 Score=58.24 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=23.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 45689999999999999999999864
No 396
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.06 E-value=0.0036 Score=49.16 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..|+|.|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 397
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.05 E-value=0.0026 Score=58.38 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=23.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|.|..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45689999999999999999999864
No 398
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.04 E-value=0.0038 Score=49.61 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..|+|+|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
No 399
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.03 E-value=0.0046 Score=48.35 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=21.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+|+|.+||||||+.+.|...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999764
No 400
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.03 E-value=0.0033 Score=49.84 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=21.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+-.++++|++|+|||||++.|++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 447899999999999999999864
No 401
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.01 E-value=0.0036 Score=49.45 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
+|+|+|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 402
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.00 E-value=0.0035 Score=51.39 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..|+|+|.+||||||+.+.|.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999874
No 403
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0038 Score=57.65 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45589999999999999999999963
No 404
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.98 E-value=0.0019 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|+|.|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 405
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.97 E-value=0.014 Score=48.06 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...++|.|+||+|||+|.+++...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999999876
No 406
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.97 E-value=0.0052 Score=48.01 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+|+|.+||||||+.+.|...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999999864
No 407
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.96 E-value=0.0042 Score=51.74 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|+|||||++.|++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999875
No 408
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.95 E-value=0.0034 Score=57.74 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|++-.
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999999863
No 409
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.95 E-value=0.0039 Score=53.11 Aligned_cols=23 Identities=17% Similarity=0.494 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..++|+|++|+|||||++.+++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999986
No 410
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.95 E-value=0.004 Score=49.56 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|+|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 411
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.94 E-value=0.0034 Score=51.88 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=20.1
Q ss_pred EEEecCCCCchhHHHHHHhcc
Q 026112 95 IAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~ 115 (243)
|+|+|++|+|||||+++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999986
No 412
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.92 E-value=0.0042 Score=53.42 Aligned_cols=26 Identities=27% Similarity=0.242 Sum_probs=23.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-+++|+|++|+|||||++.|++..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999973
No 413
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.92 E-value=0.0044 Score=49.52 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|+|.+||||||+.+.|...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999854
No 414
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.91 E-value=0.0038 Score=47.69 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|+|.+||||||+.+.|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999875
No 415
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.91 E-value=0.0043 Score=49.07 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
+|+|+|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 416
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.90 E-value=0.0044 Score=57.24 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|+|||||++.|+|.
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4558999999999999999999996
No 417
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.89 E-value=0.0048 Score=48.02 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|+|.+||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457999999999999999999875
No 418
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.86 E-value=0.0048 Score=47.88 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.8
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+++|.+||||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999764
No 419
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.85 E-value=0.0054 Score=46.68 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...++|.|++|+|||+|++++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999876
No 420
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.85 E-value=0.0048 Score=48.75 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=21.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+++|.+|+||||+.+.|.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999998775
No 421
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.85 E-value=0.0045 Score=47.70 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+++|.+||||||+.+.|...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998764
No 422
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.83 E-value=0.0058 Score=48.15 Aligned_cols=24 Identities=13% Similarity=-0.046 Sum_probs=21.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
.+-.++++|++|+|||||+..|++
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999987
No 423
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.82 E-value=0.0044 Score=47.64 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+.|+|+|.+||||||+-+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998764
No 424
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.82 E-value=0.0041 Score=53.79 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.4
Q ss_pred EEEEecCCCCchhHHHHHHh
Q 026112 94 EIAFAGRSNVGKSSMLNALT 113 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~ 113 (243)
..+|+|++|||||||+++|+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56799999999999999987
No 425
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.80 E-value=0.0054 Score=53.32 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..++++|++|+|||||++.|.+.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3458899999999999999999975
No 426
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.80 E-value=0.0042 Score=49.37 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|+|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
No 427
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.80 E-value=0.0054 Score=48.60 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.3
Q ss_pred CEEEEecCCCCchhHHHHHHhc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~ 114 (243)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999976
No 428
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.76 E-value=0.0056 Score=46.21 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 429
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.73 E-value=0.0055 Score=48.51 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
+|+|+|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 430
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.73 E-value=0.012 Score=47.85 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+++|++|+|||||.+++.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45899999999999999999876
No 431
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.73 E-value=0.0058 Score=47.11 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 432
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.72 E-value=0.0068 Score=46.59 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|+|.+||||||+.+.|...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999998764
No 433
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.72 E-value=0.0054 Score=45.99 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=18.2
Q ss_pred EEEEecCCCCchhHHHHHHh
Q 026112 94 EIAFAGRSNVGKSSMLNALT 113 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~ 113 (243)
..+|+|++|+||||++.+|.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56899999999999999976
No 434
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.72 E-value=0.0058 Score=47.29 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 435
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.71 E-value=0.006 Score=49.15 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|.|.+||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999876
No 436
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.70 E-value=0.0062 Score=54.00 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=23.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-+++|+|++|||||||++.|++..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45689999999999999999999973
No 437
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.66 E-value=0.0061 Score=55.52 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|||||||++.|+|.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999996
No 438
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.65 E-value=0.0057 Score=46.35 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.5
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|+|.+||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 439
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.65 E-value=0.0051 Score=47.09 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=17.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|++.|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999765
No 440
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.64 E-value=0.0047 Score=62.06 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-+|+|||++|||||||++.|++-.
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Confidence 45689999999999999999999864
No 441
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.64 E-value=0.006 Score=48.83 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|+|||||+..|++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457899999999999999999884
No 442
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.63 E-value=0.0053 Score=48.73 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEecCCCCchhHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.|+|+|+|||||+|.-..|+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998764
No 443
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.62 E-value=0.067 Score=47.45 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=21.5
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+.++|.|+||+|||||.+.|...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 58999999999999999999886
No 444
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.61 E-value=0.0068 Score=49.21 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|+|.+||||||+.+.|...
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 445
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.59 E-value=0.027 Score=54.04 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...++++|+||+|||+++..+...
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHH
Confidence 346799999999999999999886
No 446
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.58 E-value=0.079 Score=44.73 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|++.|+||+|||+|..++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357899999999999999999886
No 447
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.58 E-value=0.008 Score=47.74 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...++|.|++|+|||+|..++...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 448
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.56 E-value=0.0066 Score=49.64 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|+|+|++|||||||-+.|.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5789999999999999999865
No 449
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.55 E-value=0.041 Score=47.65 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=21.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|.|++|+|||+|..+++..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999776
No 450
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.55 E-value=0.0072 Score=55.04 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|+.|||||||++.|+|..
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34588999999999999999999973
No 451
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.55 E-value=0.048 Score=51.50 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....++|+|+||+|||++...|...
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999875
No 452
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.52 E-value=0.0012 Score=53.44 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.4
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.++|+|++|||||||+++|++.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3468899999999999999985
No 453
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.50 E-value=0.009 Score=47.97 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|+|.+||||||+.+.|...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 454
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.46 E-value=0.0084 Score=48.56 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|.|++||||||+.+.|...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999853
No 455
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.46 E-value=0.0079 Score=55.55 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
+-.++|+|+.|+|||||++.|+|..
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999999973
No 456
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.45 E-value=0.008 Score=48.90 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+|.|.+||||||+-+.|...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988764
No 457
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.43 E-value=0.0083 Score=47.92 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 458
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.43 E-value=0.012 Score=49.73 Aligned_cols=61 Identities=20% Similarity=0.134 Sum_probs=36.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccC--------CCCceEEEEEE-EeCCcEEEEeCCCCCCCcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--------KPGLTQTINFF-KLGTKLCLVDLPGYGFAYA 153 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~--------~~gtT~~~~~~-~~~~~~~liDTpG~~~~~~ 153 (243)
+.|+|+|+||+|||||...|........++. ..-+|..+... ..+.+..++|...+.+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s 73 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFS 73 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCC
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhcc
Confidence 4688999999999999999987632211111 11122222111 1256778888877766543
No 459
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.43 E-value=0.01 Score=51.90 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=36.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccC--------CCCceEEEEEEE-eCCcEEEEeCCCCCCCc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--------KPGLTQTINFFK-LGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~--------~~gtT~~~~~~~-~~~~~~liDTpG~~~~~ 152 (243)
+.|+|+|+||+|||||...|........++. ..-+|..+.... .+.+..++|...+.+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~ 71 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEY 71 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHh
Confidence 4688999999999999999987532122221 111222221111 25677788877766543
No 460
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.43 E-value=0.0078 Score=51.20 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+.++|+|++|+||||+++++.+.
T Consensus 36 ~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 36 LPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999999884
No 461
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.42 E-value=0.007 Score=45.97 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...++|.|++|+|||+|...+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999875
No 462
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.42 E-value=0.0099 Score=47.82 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
.+..|+|+|.+|+||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 463
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.42 E-value=0.017 Score=49.66 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|.|+||+|||+|..++...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999886
No 464
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.0075 Score=55.71 Aligned_cols=24 Identities=17% Similarity=0.412 Sum_probs=21.6
Q ss_pred CEEEEecCCCCchhHHHHHHhccc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
-.++|+|++|+|||||++.|+|..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 358999999999999999999973
No 465
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.37 E-value=0.0092 Score=53.29 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...++|+|+||+|||++.++|...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999875
No 466
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.36 E-value=0.0084 Score=48.02 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.4
Q ss_pred CEEEEecCCCCchhHHHHHHhccc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
..|+|+|+|||||+|.-..|+...
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 456788999999999999998764
No 467
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.35 E-value=0.11 Score=49.58 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
..-|++.|+||+|||+|.+++++..
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999873
No 468
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.33 E-value=0.0036 Score=54.70 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
.+ .++|+|++|+|||||+++|..
T Consensus 60 ~G-~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 60 GG-FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp SS-EEEEEESHHHHHHHHTHHHHH
T ss_pred CC-cEEEECCCCCCHHHHHHHHHH
Confidence 45 889999999999999998854
No 469
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.31 E-value=0.01 Score=46.21 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..+++.|++|+|||+|..++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999876
No 470
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.30 E-value=0.2 Score=42.77 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=19.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+-.++|.|+||+|||||...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 447889999999999998777653
No 471
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.28 E-value=0.052 Score=46.08 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=19.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..+++.|+||+|||+|...+...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 35789999999999999888753
No 472
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=95.28 E-value=0.018 Score=48.20 Aligned_cols=73 Identities=10% Similarity=0.036 Sum_probs=35.1
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-HH---HHHHHHh----cCCcEEEEe
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HE---LISLMER----SQTKYQVVL 210 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~---~~~~l~~----~~~p~i~v~ 210 (243)
++....+||-.+..+++.++..|..++.. +|++|||||+++...... .+ +...+.. .+.|++|..
T Consensus 182 k~f~~~~~~~~~~GGQ~~lRplWr~Yy~~-------tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfA 254 (312)
T 3l2o_B 182 KMFSRHNEGDDQQGSRYSVIPQIQKVCEV-------VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLS 254 (312)
T ss_dssp ---------------CCCCCHHHHHHHHH-------CSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEE
T ss_pred hhccccCCCCcCCCCHHHHHHHHHHHhcC-------CCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 34444555522222344455555554443 899999999876422111 12 2233321 478999999
Q ss_pred ec-CCCCCh
Q 026112 211 TK-TDTVFP 218 (243)
Q Consensus 211 nK-~D~~~~ 218 (243)
|| .|+...
T Consensus 255 NKkQDlp~A 263 (312)
T 3l2o_B 255 CISQGDVKR 263 (312)
T ss_dssp EESSTTSCB
T ss_pred CCcccccCC
Confidence 97 588644
No 473
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.25 E-value=0.011 Score=46.19 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+.|+|.|.+||||||+.+.|...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999774
No 474
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.20 E-value=0.011 Score=44.69 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.-.|+|.|.+||||||+-+.|...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999764
No 475
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.19 E-value=0.037 Score=47.41 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|.|++|+|||+|..++...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999876
No 476
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.16 E-value=0.0068 Score=55.34 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|+|.+|||||||.+.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4568999999999999999999986
No 477
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.13 E-value=0.011 Score=48.86 Aligned_cols=25 Identities=24% Similarity=0.130 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|+|||||+..+++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998864
No 478
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.11 E-value=0.011 Score=59.46 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=23.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|++..
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred CCcEEEEEecCCCcHHHHHHHhcccc
Confidence 46689999999999999999999974
No 479
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.11 E-value=0.012 Score=50.01 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=20.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+.++|.|++|+||||+++++++.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999886
No 480
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.06 E-value=0.013 Score=48.56 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~ 114 (243)
...|+|+|.+||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999974
No 481
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.06 E-value=0.011 Score=46.25 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+++|.+||||||+-+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999764
No 482
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.01 E-value=0.024 Score=47.09 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.8
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..++|+|++|+|||++..+|.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999999875
No 483
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.99 E-value=0.012 Score=59.05 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=23.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|.+..
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999874
No 484
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.99 E-value=0.013 Score=50.29 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=21.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+.++|.|++|+|||||++.+.+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 485
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.98 E-value=0.0088 Score=58.02 Aligned_cols=25 Identities=36% Similarity=0.504 Sum_probs=22.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|+|||||++.|+|.
T Consensus 698 ~GeivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 698 LSSRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999986
No 486
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.96 E-value=0.014 Score=49.29 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+.|+|+|+||+|||||...|....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3467899999999999999998763
No 487
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.95 E-value=0.029 Score=41.44 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=20.8
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|++.|++|+|||++..++...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999876
No 488
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.94 E-value=0.091 Score=47.52 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+++|.||+||||+-+.|...
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347889999999999999999764
No 489
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.91 E-value=0.013 Score=46.13 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=18.4
Q ss_pred CEEEEecCCCCchhHHHHHHh
Q 026112 93 PEIAFAGRSNVGKSSMLNALT 113 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~ 113 (243)
...+|+|+.|+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 366889999999999999875
No 490
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.90 E-value=0.1 Score=43.42 Aligned_cols=23 Identities=13% Similarity=0.449 Sum_probs=20.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|.|++|+|||+|..++...
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999775
No 491
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.89 E-value=0.012 Score=46.69 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+++.|+||+||||+..+|+..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999998888764
No 492
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.89 E-value=0.016 Score=45.81 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..|+|+|+||+|||||...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999999876
No 493
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.88 E-value=0.018 Score=47.91 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=21.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....++|.|+||+|||++..++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4557999999999999999988775
No 494
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.86 E-value=0.021 Score=45.85 Aligned_cols=40 Identities=10% Similarity=-0.041 Sum_probs=28.5
Q ss_pred EEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 177 RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 177 ~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
.-++++|.-+-+.....+.+..+...++|++++.-..|-.
T Consensus 90 ~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~ 129 (223)
T 2b8t_A 90 TKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFK 129 (223)
T ss_dssp CCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTT
T ss_pred CCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecccccc
Confidence 4567888665454445556666666789999999988865
No 495
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.85 E-value=0.013 Score=47.96 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+|.|.+||||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4568899999999999999999876
No 496
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.84 E-value=0.018 Score=48.20 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|++.|+||+|||+|.+++.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 347899999999999999999986
No 497
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.83 E-value=0.018 Score=49.22 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+.|+|+|++|+|||||-..|....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3578999999999999999999864
No 498
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.83 E-value=0.015 Score=56.47 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|+|||||++.|++.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3558899999999999999999964
No 499
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.82 E-value=0.22 Score=41.61 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=49.5
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (243)
.+++.|++|+|||++..++..... ..+.-++....+ .+.+. ..+..+.....
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l~--------------------~~~~~i~~~~~~----~~~i~----~~~~~~~~~~~ 101 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDVN--------------------ADMMFVNGSDCK----IDFVR----GPLTNFASAAS 101 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHTT--------------------EEEEEEETTTCC----HHHHH----THHHHHHHBCC
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhC--------------------CCEEEEcccccC----HHHHH----HHHHHHHhhcc
Confidence 455667799999999999987621 123333432221 12122 22222222211
Q ss_pred -CccEEEEEEeCCCCCC-hhh-HHHHHHHHh--cCCcEEEEeecCCC
Q 026112 174 -SLKRVCLLIDTKWGVK-PRD-HELISLMER--SQTKYQVVLTKTDT 215 (243)
Q Consensus 174 -~~d~v~~vvd~~~~~~-~~~-~~~~~~l~~--~~~p~i~v~nK~D~ 215 (243)
.....++++|--+.+. ... ..++..+.. .+.++++..|..+.
T Consensus 102 ~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 102 FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 1256677888665554 332 344455544 24667777776654
No 500
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.80 E-value=0.011 Score=55.22 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.2
Q ss_pred CCEEEEecCCCCchhHHHHHHh
Q 026112 92 LPEIAFAGRSNVGKSSMLNALT 113 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~ 113 (243)
+-.++|+|++|||||||++.++
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTTH
T ss_pred CCEEEEEeeCCCCHHHHHHHHH
Confidence 4478999999999999998765
Done!