BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026113
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 308 bits (788), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 151/225 (67%), Positives = 177/225 (78%), Gaps = 1/225 (0%)
Query: 1 MSMASQVIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSII 60
M+ Q +R W GI F PATQT QE+VN+LTILVMGKGGVGKSSTVNSII
Sbjct: 1 MASQQQTVRGWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSII 60
Query: 61 GEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120
GE+ V++S FQSEGPRPVMVSRSRAGFTLNI+DTPGLIEGGY+N A+ +IK FLL+KTI
Sbjct: 61 GERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTI 120
Query: 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK 180
DVLLYVDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHAQ S PD L Y+ F SK
Sbjct: 121 DVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK 180
Query: 181 RSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKV 225
RSEALL+ V + KKD Q S +PVVL+ENSGRC KN++DEKV
Sbjct: 181 RSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEKV 224
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 305 bits (781), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 149/220 (67%), Positives = 174/220 (79%), Gaps = 1/220 (0%)
Query: 6 QVIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSIIGEKAV 65
Q +REW GI F PATQT QE+VN+LTILV GKGGVGKSSTVNSIIGE+ V
Sbjct: 6 QTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVXGKGGVGKSSTVNSIIGERVV 65
Query: 66 TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLY 125
++S FQSEGPRPV VSRSRAGFTLNI+DTPGLIEGGY+N A+ +IK FLL+KTIDVLLY
Sbjct: 66 SISPFQSEGPRPVXVSRSRAGFTLNIIDTPGLIEGGYINDXALNIIKSFLLDKTIDVLLY 125
Query: 126 VDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEAL 185
VDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHAQ S PD L Y+ F SKRSEAL
Sbjct: 126 VDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEAL 185
Query: 186 LKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKV 225
L+ V + KKD Q S +PVVL+ENSGRC KN++DEKV
Sbjct: 186 LQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEKV 224
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 287 bits (734), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 135/224 (60%), Positives = 174/224 (77%), Gaps = 2/224 (0%)
Query: 7 VIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVT 66
++REW+G QQFP ATQ Q+++N++T+LV+GKGGVGKSSTVNS+IGE+ V
Sbjct: 4 LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63
Query: 67 VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYV 126
VS FQ+EG RPVMVSR+ GFT+NI+DTPGL+E GYVN+ A++LIK FL+N+TIDVLLYV
Sbjct: 64 VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYV 123
Query: 127 DRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALL 186
DRLDVYRVD LDKQ+ AIT FG++IW + L+VLTHAQ S PD L YE F SKRS++LL
Sbjct: 124 DRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLL 183
Query: 187 KFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPD 230
K + + M+K++ + S + VV ENSGRC+KN+ DEK LP+
Sbjct: 184 KTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKA--LPN 225
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 286 bits (732), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 135/226 (59%), Positives = 173/226 (76%), Gaps = 2/226 (0%)
Query: 7 VIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVT 66
++REW+G QQFP ATQ Q+++N++T+LV+GKGGVGKSSTVNS+IGE+ V
Sbjct: 4 LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63
Query: 67 VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYV 126
VS FQ+EG RPVMVSR+ GFT+NI+DTPGL+E GYVN+ A++LIK FL+N+TIDVLLYV
Sbjct: 64 VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYV 123
Query: 127 DRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALL 186
DRLDVYRVD LDKQ+ AIT FG++IW + L+VLTHAQ S PD L YE F SKRS+ LL
Sbjct: 124 DRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDELL 183
Query: 187 KFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNR 232
K + + M+K++ + S + VV ENSGRC+KN+ DEK LP+
Sbjct: 184 KTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKA--LPNGE 227
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 285 bits (728), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 134/226 (59%), Positives = 173/226 (76%), Gaps = 2/226 (0%)
Query: 7 VIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVT 66
++REW+G QQFP ATQ Q+++N++T+LV+GKGGVGKSSTVNS+IGE+ V
Sbjct: 4 LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63
Query: 67 VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYV 126
VS FQ+EG RPVMVSR+ GFT+NI+DTPGL+E GYVN+ A++LIK FL+N+TIDVLLYV
Sbjct: 64 VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYV 123
Query: 127 DRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALL 186
DRLDVY VD LDKQ+ AIT FG++IW + L+VLTHAQ S PD L YE F SKRS++LL
Sbjct: 124 DRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLL 183
Query: 187 KFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNR 232
K + + M+K++ + S + VV ENSGRC+KN+ DEK LP+
Sbjct: 184 KTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKA--LPNGE 227
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 284 bits (726), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 134/226 (59%), Positives = 173/226 (76%), Gaps = 2/226 (0%)
Query: 7 VIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVT 66
++REW+G QQFP ATQ Q+++N++T+LV+GKGGVGKSSTVNS+IGE+ V
Sbjct: 3 LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 62
Query: 67 VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYV 126
VS FQ+EG RPVMVSR+ GFT+NI+DTPGL+E GYVN+ A++LIK FL+N+TIDVLLYV
Sbjct: 63 VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYV 122
Query: 127 DRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALL 186
DRLDVY VD LDKQ+ AIT FG++IW + L+VLTHAQ S PD L YE F SKRS++LL
Sbjct: 123 DRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLL 182
Query: 187 KFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNR 232
K + + M+K++ + S + VV ENSGRC+KN+ DEK LP+
Sbjct: 183 KTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKA--LPNGE 226
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 34 QENVNT-LTILVMGKGGVGKSSTVNSIIGEKAVTVST-FQSEGPRPVMVSRSRAGFTLNI 91
QE N+ L I+++GK G GKS+T NSI+G K T +S + S S L +
Sbjct: 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVV 82
Query: 92 VDTPGLIEGGYVNYHAIQLIKRFLL--NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNF 149
VDTPG+ + N + I R +L + LL V L Y + + + T I F
Sbjct: 83 VDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKXF 140
Query: 150 GEQIWKRALIVLT 162
GE+ +++ T
Sbjct: 141 GERARSFXILIFT 153
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 26/142 (18%)
Query: 38 NTLTILVMGKGGVGKSSTVNSIIGEK-------AVTVSTFQSEGPR-----PVMVSRSRA 85
+T ++++G+ G GKS+T NSI+G++ A +V+ + G R V V +
Sbjct: 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPD 79
Query: 86 GFTLNIVDT-PGLIEGGYVNYHAIQLIKRFLLNK-TIDVLLYVDRLDVYRVDNLDKQITR 143
F+ + T PG E G+ +LL+ LL V +L R D+Q R
Sbjct: 80 IFSSQVSKTDPGCEERGHC----------YLLSAPGPHALLLVTQLG--RFTAQDQQAVR 127
Query: 144 AITDNFGEQIWKRALIVLTHAQ 165
+ D FGE + K +IV T +
Sbjct: 128 QVRDMFGEDVLKWMVIVFTRKE 149
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 30/167 (17%)
Query: 40 LTILVMGKGGVGKSSTVNSI---------IGEKAVTVSTFQSEGPRPVMVSRSRAGFTLN 90
L I+++GK G GKS+ NSI +G + +T + +S+G S +
Sbjct: 23 LRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQG--------SWGNREIV 74
Query: 91 IVDTPGLIEGGYVNYHAIQLIKR----FLLNK-TIDVLLYVDRLDVYRVDNLDKQITRAI 145
I+DTP + H L K +LL+ VLL V +L Y + D+Q + +
Sbjct: 75 IIDTPDMFS---WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYT--SQDQQAAQRV 129
Query: 146 TDNFGEQIWKRALIVLTHAQ-LSLPDRLDYEVFCSKRSEALLKFVSP 191
+ FGE +++ TH + L+ +DY ++AL K V+
Sbjct: 130 KEIFGEDAMGHTIVLFTHKEDLNGGSLMDY--MHDSDNKALSKLVAA 174
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 24/164 (14%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPV--MVSRSRAGF---TLNIVD 93
L I+++GK G GKS+ NSI+ ++A F+S+ G + + S+S+ + + I+D
Sbjct: 3 LRIILVGKTGTGKSAAGNSILRKQA-----FESKLGSQTLTKTCSKSQGSWGNREIVIID 57
Query: 94 TPGLIEGGYVNYHAIQLIKR----FLLNK-TIDVLLYVDRLDVYRVDNLDKQITRAITDN 148
TP + H L K +LL+ VLL V +L Y + D+Q + + +
Sbjct: 58 TPDMFS---WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYT--SQDQQAAQRVKEI 112
Query: 149 FGEQIWKRALIVLTHAQ-LSLPDRLDYEVFCSKRSEALLKFVSP 191
FGE +++ TH + L+ +DY ++AL K V+
Sbjct: 113 FGEDAMGHTIVLFTHKEDLNGGSLMDY--MHDSDNKALSKLVAA 154
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 24/164 (14%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPV--MVSRSRAGF---TLNIVD 93
L I+++GK G GKS+ NSI+ ++A F+S+ G + + S+S+ + + I+D
Sbjct: 6 LRIILVGKTGTGKSAAGNSILRKQA-----FESKLGSQTLTKTCSKSQGSWGNREIVIID 60
Query: 94 TPGLIEGGYVNYHAIQLIKR----FLLNK-TIDVLLYVDRLDVYRVDNLDKQITRAITDN 148
TP + H L K +LL+ VLL V +L Y + D+Q + + +
Sbjct: 61 TPDMFS---WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYT--SQDQQAAQRVKEI 115
Query: 149 FGEQIWKRALIVLTHAQ-LSLPDRLDYEVFCSKRSEALLKFVSP 191
FGE +++ TH + L+ +DY ++AL K V+
Sbjct: 116 FGEDAMGHTIVLFTHKEDLNGGSLMDY--MHDSDNKALSKLVAA 157
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEG 100
I+V G+ VGKSS +N+++G+ VS + PV S + +VDTPGL +
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 96
Query: 101 GYVNYHAIQLIKRFLLNKTIDVLL 124
G + ++ +R +L+
Sbjct: 97 GELGRLRVEKARRVFYRADCGILV 120
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 21/137 (15%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAGFTLN-----IVD 93
L I+++GK G GKS+ NSI+ ++A F+S+ G + + + S++ + I+D
Sbjct: 23 LRIILVGKTGTGKSAAGNSILRKQA-----FESKLGSQTLTKTCSKSQGSWGNREIVIID 77
Query: 94 TPGLIEGGYVNYHAIQLIKR----FLLNK-TIDVLLYVDRLDVYRVDNLDKQITRAITDN 148
TP H L K +LL+ VLL V +L Y + D+Q + + +
Sbjct: 78 TPDXFS---WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYT--SQDQQAAQRVKEI 132
Query: 149 FGEQIWKRALIVLTHAQ 165
FGE +++ TH +
Sbjct: 133 FGEDAXGHTIVLFTHKE 149
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 33.9 bits (76), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 40 LTILVMGKGGVGKSSTVNSII----------GEKAVTVSTFQSEGPRPVMVSRSRAGFTL 89
T++V+G+ G+GKS+ +NS+ G T Q E + V++ L
Sbjct: 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSK-VLIKEGGVQLLL 90
Query: 90 NIVDTPGL 97
IVDTPG
Sbjct: 91 TIVDTPGF 98
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTP 95
N + ++G+ VGKSS VN+++GE+ V VS V S + IVDT
Sbjct: 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTA 251
Query: 96 GLIEGGYV-----NYHAIQLIKRFLLNKTIDVLL 124
G+ + G V Y ++ +K ++ + V+L
Sbjct: 252 GMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVL 285
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
+ ++G+ VGKS+ N I GE+ V + S + N++DT G+
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 81
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 40 LTILVMGKGGVGKSSTVNSII----------GEKAVTVSTFQSEGPRPVMVSRSRAGFTL 89
T++V+G+ G+GKS+ +NS+ G T Q E + V++ L
Sbjct: 4 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSK-VLIKEGGVQLLL 62
Query: 90 NIVDTPGL 97
IVDTPG
Sbjct: 63 TIVDTPGF 70
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 40 LTILVMGKGGVGKSSTVNSII----------GEKAVTVSTFQSEGPRPVMVSRSRAGFTL 89
T++V+G+ G+GKS+ +NS+ G T Q E + V++ L
Sbjct: 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSK-VLIKEGGVQLLL 67
Query: 90 NIVDTPGL 97
IVDTPG
Sbjct: 68 TIVDTPGF 75
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS-RSRAGFTLNIVDTPGL 97
I ++G+ VGKS+ +N ++G+K +++++ +++ R +V + + VDTPGL
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQK-ISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 63
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIE 99
T+L++G+ VGKS+ N ++ +K V + PV + G T +VDT G+ +
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 61
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDT 94
E + + + ++G+ VGKS+ N+I+ ++ VS PV G VDT
Sbjct: 176 EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDT 235
Query: 95 PGLIEGG---------YVNYHAIQLIKR 113
GL Y NY + I++
Sbjct: 236 AGLRRKSRVEPRTVEKYSNYRVVDSIEK 263
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS-RSRAGFTLNIVDTPGL 97
I ++G+ VGKS+ +N ++G+K +++++ +++ R +V + + VDTPGL
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQK-ISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 66
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 12/62 (19%)
Query: 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF------TLNIVDTP 95
+ ++GK VGKS+ +N+++G K +S PRP + G + VDTP
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPIS------PRPQTTRKRLRGILTEGRRQIVFVDTP 63
Query: 96 GL 97
GL
Sbjct: 64 GL 65
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTP 95
N + ++G+ VGKSS VN+ +GE+ V VS V S + IVDT
Sbjct: 172 NEEVIQFCLIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTA 231
Query: 96 GLIEGGYV-----NYHAIQLIKRFLLNKTIDVLL 124
G + G V Y ++ +K ++ + V+L
Sbjct: 232 GXRKKGKVYETTEKYSVLRALKAIDRSEVVAVVL 265
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
+ ++G+ VGKS+ N I GE+ V + S + N++DT G+
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 61
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100
TI++ G VGKSS +N I+ V V ++ + I+DTPGL++
Sbjct: 31 TIILSGAPNVGKSSFMN-IVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDR 89
Query: 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD 135
+ N + I++ TI L +++ + ++ +D
Sbjct: 90 AFENRNTIEM-------TTITALAHINGVILFIID 117
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAG---------FTL 89
I+V+G+ G+GKS+ VN++ + + S++ E P V G L
Sbjct: 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKL 62
Query: 90 NIVDTPGL 97
++DTPG
Sbjct: 63 TVIDTPGF 70
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 40 LTILVMGKGGVGKSSTVNSII-----------GEKAVTVSTFQSEGPRPVMVSRSRAGFT 88
T++V+G+ G+GKS+ +NS+ G T Q E V +
Sbjct: 6 FTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEAS-TVEIEERGVKLR 64
Query: 89 LNIVDTPG 96
L +VDTPG
Sbjct: 65 LTVVDTPG 72
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 40 LTILVMGKGGVGKSSTVNSII-----------GEKAVTVSTFQSEGPRPVMVSRSRAGFT 88
T++V+G+ G+GKS+ +NS+ G T Q E V +
Sbjct: 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEAS-TVEIEERGVKLR 96
Query: 89 LNIVDTPG 96
L +VDTPG
Sbjct: 97 LTVVDTPG 104
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVT-----VSTFQSEGPRPVMVSRSRAGFTLNI 91
++ + + + G VGK+S N++ G K V+ + EG + G+T+N+
Sbjct: 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEG------VFTYKGYTINL 56
Query: 92 VDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYV 126
+D PG GY + ++ + +LL D+++ V
Sbjct: 57 IDLPGTYSLGYSSIDE-KIARDYLLKGDADLVILV 90
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVT-----VSTFQSEGPRPVMVSRSRAGFTLNI 91
++ + + + G VGK+S N++ G K V+ + EG + G+T+N+
Sbjct: 3 LHXVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEG------VFTYKGYTINL 56
Query: 92 VDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYV 126
+D PG GY + ++ + +LL D+++ V
Sbjct: 57 IDLPGTYSLGYSSIDE-KIARDYLLKGDADLVILV 90
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 41 TILVMGKGGVGKSSTVNSIIGEKAVTVS-TFQSEGPRPVMVSRSRAG-FTLNIVDTPGLI 98
T+++ G VGKS+ + ++ K S F + G + V + G F I+DTPGL+
Sbjct: 169 TVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRG---INVGQFEDGYFRYQIIDTPGLL 225
Query: 99 E 99
+
Sbjct: 226 D 226
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVT-----VSTFQSEGPRPVMVSRSRAGFTLNI 91
++ + + + G VGK+S N++ G K V+ + EG + G+T+N+
Sbjct: 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEG------VFTYKGYTINL 56
Query: 92 VDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYV 126
+D PG GY + ++ + +LL D+++ V
Sbjct: 57 IDLPGTYSLGYSSIDE-KIARDYLLKGDADLVILV 90
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 40 LTILVMGKGGVGKSSTVNS-----------IIGEKAVTVSTFQSEGPRPVMVSRSRAGFT 88
T+ V+G+ G+GKS+ +NS I G T Q E V +
Sbjct: 19 FTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEAS-TVEIEERGVKLR 77
Query: 89 LNIVDTPG 96
L +VDTPG
Sbjct: 78 LTVVDTPG 85
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 22/129 (17%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIE 99
L ++++GK VGKS+ +N ++ E V+ + G IVDT G
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAG--- 300
Query: 100 GGYVNYHAIQLIKRFLLNKTI------DVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQ 152
V L++R + +T+ D++L+V LD +D D++I I +
Sbjct: 301 ---VRSETNDLVERLGIERTLQEIEKADIVLFV--LDASSPLDEEDRKILERIKN----- 350
Query: 153 IWKRALIVL 161
KR L+V+
Sbjct: 351 --KRYLVVI 357
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 40 LTILVMGKGGVGKSSTVNSII-----------GEKAVTVSTFQSEGPRPVMVSRSRAGFT 88
T+ V+G+ G+GKS+ +NS+ G T Q E V +
Sbjct: 38 FTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEAS-TVEIEERGVKLR 96
Query: 89 LNIVDTPG 96
L +VDTPG
Sbjct: 97 LTVVDTPG 104
>pdb|3LW8|E Chain E, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|F Chain F, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|G Chain G, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|H Chain H, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|F Chain F, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|G Chain G, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|F Chain F, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
pdb|3LYQ|A Chain A, Crystal Structure Of Ipgb2 From Shigella Flexneri
pdb|3LYQ|B Chain B, Crystal Structure Of Ipgb2 From Shigella Flexneri
Length = 192
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 21/120 (17%)
Query: 124 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSE 183
+YV R+ +D + +R I DN +QI+K Q+ R+ ++ ++ S
Sbjct: 73 VYVSRVVNQCIDKFCAEHSRKIGDNLRKQIFK---------QVEKDYRISLDINAAQSS- 122
Query: 184 ALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNRIQCCFPRNVFY 243
+ VS S++ KKK + L E R KN+ V+ L ++ F +NV Y
Sbjct: 123 -INHLVSGSSYFKKKMDE-------LCEGMNRSVKNDTTSNVANLISDQF---FEKNVQY 171
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEK 63
L ++++G GGVGKSS +N + K
Sbjct: 8 LKVILLGDGGVGKSSLMNRYVTNK 31
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 20/96 (20%)
Query: 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNI--------VD 93
+ ++GK VGKS+ +N+++G K +S +R R NI +D
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAG-------TTRMRVLGVKNIPNEAQIIFLD 64
Query: 94 TPGLIE---GGYVNYHAIQLIKRFLLNKTIDVLLYV 126
TPG+ E + + +++ K+ L + DV+L++
Sbjct: 65 TPGIYEPKKSDVLGHSMVEIAKQSL--EEADVILFM 98
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 20/96 (20%)
Query: 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNI--------VD 93
+ ++GK VGKS+ +N+++G K +S +R R NI +D
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAG-------TTRMRVLGVKNIPNEAQIIFLD 65
Query: 94 TPGLIE---GGYVNYHAIQLIKRFLLNKTIDVLLYV 126
TPG+ E + + +++ K+ L + DV+L++
Sbjct: 66 TPGIYEPKKSDVLGHSMVEIAKQSL--EEADVILFM 99
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEK 63
I+++G GGVGKSS +N + K
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNK 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,638,188
Number of Sequences: 62578
Number of extensions: 251388
Number of successful extensions: 731
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 686
Number of HSP's gapped (non-prelim): 57
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)