BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026113
(243 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q38906|TOC34_ARATH Translocase of chloroplast 34, chloroplastic OS=Arabidopsis
thaliana GN=TOC34 PE=1 SV=2
Length = 313
Score = 337 bits (863), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 159/222 (71%), Positives = 191/222 (86%)
Query: 4 ASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK 63
A Q +REW+GIQQFPPATQ+KLLE+LGK K+E+V++LT+LVMGKGGVGKSSTVNS+IGEK
Sbjct: 3 ALQTLREWIGIQQFPPATQSKLLEILGKYKEEDVSSLTVLVMGKGGVGKSSTVNSVIGEK 62
Query: 64 AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123
A VSTFQSEG RP +VSR+R+GFTLNI+DTPGLIEGGYVN AI +IKRFLLN TIDVL
Sbjct: 63 AAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVNDQAINIIKRFLLNMTIDVL 122
Query: 124 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSE 183
LYVDRLDVYRVD+LD+Q+ AITD FG++IWK++ +VLTHAQ S PD L+Y F SKRS
Sbjct: 123 LYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHAQFSPPDGLNYNHFVSKRSN 182
Query: 184 ALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKV 225
ALLK + +KK+D+QG +PV+LVENSGRC KNE+DEK+
Sbjct: 183 ALLKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEKI 224
>sp|Q41009|TOC34_PEA Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1
Length = 310
Score = 330 bits (847), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 161/225 (71%), Positives = 187/225 (83%), Gaps = 1/225 (0%)
Query: 1 MSMASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSII 60
M+ Q +REW GI F PATQTKLLELLG LKQE+VN+LTILVMGKGGVGKSSTVNSII
Sbjct: 1 MASQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSII 60
Query: 61 GEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120
GE+ V++S FQSEGPRPVMVSRSRAGFTLNI+DTPGLIEGGY+N A+ +IK FLL+KTI
Sbjct: 61 GERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTI 120
Query: 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK 180
DVLLYVDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHAQ S PD L Y+ F SK
Sbjct: 121 DVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK 180
Query: 181 RSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKV 225
RSEALL+ V + KKD Q S +PVVL+ENSGRC KN++DEKV
Sbjct: 181 RSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEKV 224
>sp|O23680|TOC33_ARATH Translocase of chloroplast 33, chloroplastic OS=Arabidopsis
thaliana GN=TOC33 PE=1 SV=1
Length = 297
Score = 305 bits (781), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 142/225 (63%), Positives = 182/225 (80%), Gaps = 2/225 (0%)
Query: 7 VIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVT 66
++REW+G QQFP ATQ KL+E GKLKQ+++N++T+LV+GKGGVGKSSTVNS+IGE+ V
Sbjct: 4 LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63
Query: 67 VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYV 126
VS FQ+EG RPVMVSR+ GFT+NI+DTPGL+E GYVN+ A++LIK FL+N+TIDVLLYV
Sbjct: 64 VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYV 123
Query: 127 DRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALL 186
DRLDVYRVD LDKQ+ AIT FG++IW + L+VLTHAQ S PD L YE F SKRS++LL
Sbjct: 124 DRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLL 183
Query: 187 KFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDN 231
K + + M+K++ + S + VV ENSGRC+KN+ DEK LP+
Sbjct: 184 KTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKA--LPNG 226
>sp|Q552Z6|GTPA_DICDI GTP-binding protein A OS=Dictyostelium discoideum GN=gtpA PE=3 SV=1
Length = 449
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 114/220 (51%), Gaps = 18/220 (8%)
Query: 21 TQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV 80
T +L E+L LK N +L++G+ GVGKSST+N++ G + V + +S P
Sbjct: 134 TTEELQEMLAVLKGVQ-NECNVLLLGRTGVGKSSTLNTVFGID-IPVHSSESCTQDPFTY 191
Query: 81 SRSRAGFTLNIVDTPGLIE--GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD 138
SR GF LNI+DTPG ++ G V+ + + I+R+L KTI +L+V++ R D
Sbjct: 192 SRVVNGFKLNIIDTPGFLDSQGELVDSNNMIKIQRYLSGKTIHCVLFVEKFTETRFDGAH 251
Query: 139 KQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK------------RSEALL 186
+ + T+ G Q+W+ A +VLT+A LPD Y+ F + R+
Sbjct: 252 QLVINQFTEKLGPQLWRNAAVVLTYANSVLPDSC-YDGFDEEDDVGPWKKHYEARALQFR 310
Query: 187 KFVSPS-TWMKKKDIQGSFVPVVLVENSGRCAKNENDEKV 225
KF + + + D +PV +ENS RC +NE ++V
Sbjct: 311 KFFAGILAQLPQDDYPPKHIPVYAMENSRRCKRNEQGQRV 350
>sp|Q9LUS2|TC120_ARATH Translocase of chloroplast 120, chloroplastic OS=Arabidopsis
thaliana GN=TOC120 PE=1 SV=1
Length = 1089
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 109/203 (53%), Gaps = 15/203 (7%)
Query: 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98
+ TI+V+GK GVGKS+T+NSI E ++ FQ + + G + ++DTPGL+
Sbjct: 456 SCTIMVLGKSGVGKSATINSIFDELKISTDAFQVGTKKVQDIEGFVQGIKVRVIDTPGLL 515
Query: 99 ---EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWK 155
+ N ++ ++ F+ D++LY+DRLD+ D+ D + R ITD FG IW
Sbjct: 516 PSWSDQHKNEKILKSVRAFIKKSPPDIVLYLDRLDMQSRDSGDMPLLRTITDVFGPSIWF 575
Query: 156 RALIVLTHAQLSLPDRLD-----YEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLV 210
A++ LTHA + PD + Y++F ++RS + + + + D++ PV LV
Sbjct: 576 NAIVGLTHAASAPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAG----DMR-LMNPVSLV 630
Query: 211 ENSGRCAKNENDEKVSQLPDNRI 233
EN C N ++V LP+ ++
Sbjct: 631 ENHSACRTNRAGQRV--LPNGQV 651
>sp|O81283|TC159_ARATH Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana
GN=TOC159 PE=1 SV=1
Length = 1503
Score = 100 bits (249), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 112/231 (48%), Gaps = 30/231 (12%)
Query: 20 ATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM 79
A + K +E + +E + +L ILV+GK GVGKS+T+NSI+G + ++ F
Sbjct: 836 AAKKKAVESEAEGNEELIFSLNILVLGKAGVGKSATINSILGNQIASIDAFGLSTTSVRE 895
Query: 80 VSRSRAGFTLNIVDTPGLIEGGY---VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDN 136
+S + G + +DTPGL N + +K+ + D++LYVDRLD D
Sbjct: 896 ISGTVNGVKITFIDTPGLKSAAMDQSTNAKMLSSVKKVMKKCPPDIVLYVDRLDTQTRDL 955
Query: 137 LDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR-----LDYEVFCSKRSEAL------ 185
+ + R IT + G IWK A++ LTHA + PD L Y+VF ++ S +
Sbjct: 956 NNLPLLRTITASLGTSIWKNAIVTLTHAASAPPDGPSGTPLSYDVFVAQCSHIVQQSIGQ 1015
Query: 186 ----LKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNR 232
L+ ++PS PV LVEN C KN E V LP+ +
Sbjct: 1016 AVGDLRLMNPSLMN----------PVSLVENHPLCRKNR--EGVKVLPNGQ 1054
>sp|Q9SLF3|TC132_ARATH Translocase of chloroplast 132, chloroplastic OS=Arabidopsis
thaliana GN=TOC132 PE=1 SV=1
Length = 1206
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 102/203 (50%), Gaps = 15/203 (7%)
Query: 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98
+ TI+V+GK GVGKS+T+NSI E FQ R V G + ++DTPGL+
Sbjct: 574 SCTIMVLGKSGVGKSATINSIFDEVKFCTDAFQMGTKRVQDVEGLVQGIKVRVIDTPGLL 633
Query: 99 ---EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWK 155
N + +K F+ D++LY+DRLD+ D+ D + R I+D FG IW
Sbjct: 634 PSWSDQAKNEKILNSVKAFIKKNPPDIVLYLDRLDMQSRDSGDMPLLRTISDVFGPSIWF 693
Query: 156 RALIVLTHAQLSLPDRLD-----YEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLV 210
A++ LTHA PD + Y++F ++RS + + + + + PV LV
Sbjct: 694 NAIVGLTHAASVPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMRL-----MNPVSLV 748
Query: 211 ENSGRCAKNENDEKVSQLPDNRI 233
EN C N ++V LP+ ++
Sbjct: 749 ENHSACRTNRAGQRV--LPNGQV 769
>sp|Q6S5G3|TOC90_ARATH Translocase of chloroplast 90, chloroplastic OS=Arabidopsis
thaliana GN=TOC90 PE=1 SV=1
Length = 793
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 99/195 (50%), Gaps = 13/195 (6%)
Query: 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL- 97
+L ILV+GK GVGKS+T+NSI G+ F+ R V + +G + +DTPG
Sbjct: 166 SLRILVLGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTVSGVKVTFIDTPGFH 225
Query: 98 ---IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIW 154
N + IKR++ + DV+LY+DRLD+ + D + + IT+ FG IW
Sbjct: 226 PLSSSSTRKNRKILLSIKRYVKKRPPDVVLYLDRLDMIDMRYSDFSLLQLITEIFGAAIW 285
Query: 155 KRALIVLTHAQLSLPDR----LDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLV 210
++V+TH+ + R ++YE + +R + + ++ + K + PV+LV
Sbjct: 286 LNTILVMTHSAATTEGRNGQSVNYESYVGQRMDVVQHYIHQAVSDTKLE-----NPVLLV 340
Query: 211 ENSGRCAKNENDEKV 225
EN C KN E V
Sbjct: 341 ENHPSCKKNLAGEYV 355
>sp|Q6P9H5|GIMA6_HUMAN GTPase IMAP family member 6 OS=Homo sapiens GN=GIMAP6 PE=2 SV=1
Length = 292
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 19/163 (11%)
Query: 15 QQFPPA--TQTKLLELLGKLKQENVNT---LTILVMGKGGVGKSSTVNSIIGEKAVTVST 69
Q+ PP +Q +LEL G L+++ T L +++MGK G GKS+T NSI+G
Sbjct: 11 QENPPEELSQDPVLELSGGLREKEQKTPRRLRLILMGKTGSGKSATGNSILGR-----DV 65
Query: 70 FQSE-GPRPVMV-----SRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT-IDV 122
F+S+ RPV SR AG L ++DTP ++ A + + +L+
Sbjct: 66 FESKLSTRPVTKTSQRRSREWAGKELEVIDTPNILSPQVSPEVADAICQAIVLSAPGPHA 125
Query: 123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165
+L V +L R + D+Q+ R + + FG + ++V T +
Sbjct: 126 VLLVTQLG--RFTDEDQQVVRRLQEVFGVGVLGHTILVFTRKE 166
>sp|P70224|GIMA1_MOUSE GTPase IMAP family member 1 OS=Mus musculus GN=Gimap1 PE=1 SV=3
Length = 277
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 14/148 (9%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV-----MVSRSRAGFTLNIVDT 94
L ++++G+ G GKS+T NSI+G+K G PV + SR AG+ + +VDT
Sbjct: 4 LRLILVGRTGTGKSATGNSILGQKCF----LSRLGAVPVTRSCTLASRMWAGWQVEVVDT 59
Query: 95 PGLI--EGGYVNYHAIQLIKRFLLNK-TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE 151
P + E + ++ + F+L+ LL V +L + + D Q A+ FG+
Sbjct: 60 PDIFSSEIPRTDPGCVETARCFVLSAPGPHALLLVTQLGRFTMQ--DSQALAAVKRLFGK 117
Query: 152 QIWKRALIVLTHAQLSLPDRLDYEVFCS 179
Q+ R ++V T + D L V C+
Sbjct: 118 QVMARTVVVFTRQEDLAGDSLQDYVHCT 145
>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1
Length = 219
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 33 KQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLN 90
+ + + L I+++GK G GKSST NSI+GEK V S ++ V R G L
Sbjct: 24 QDQGIPQLRIVLLGKTGAGKSSTGNSILGEK-VFNSGICAKSITKVCEKRVSTWDGKELV 82
Query: 91 IVDTPGLIEGGYVNYHAIQLIKRF--LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDN 148
+VDTPG+ + + + I R+ L + LL V L Y V+ + + T+ I D
Sbjct: 83 VVDTPGIFDTEVPDADTQREITRYVALTSPGPHALLLVVPLGRYTVE--EHKATQKILDM 140
Query: 149 FGEQIWKRALIVLT 162
FG+Q + +++LT
Sbjct: 141 FGKQARRFMILLLT 154
>sp|A5PKB7|GIMA6_BOVIN GTPase IMAP family member 6 OS=Bos taurus GN=GIMAP6 PE=2 SV=1
Length = 341
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVS-----RSRAGFTL 89
+ TL ++++GK G GKS+T NSI+G + F+S+ RPV + R+ G L
Sbjct: 90 TLQTLWLILVGKSGSGKSATGNSILGRR-----VFESKLSARPVTQAFQQGCRAWEGREL 144
Query: 90 NIVDTPGLIE---GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAIT 146
++DTP ++ G+ + L K VLL + R D+Q+ +
Sbjct: 145 QVIDTPDILSPWAAGWATAQGVGEAGTGSLPKQYAVLLVT---QLGRFTEEDQQVAGRLE 201
Query: 147 DNFGEQIWKRALIVLT 162
+ FG+ I R ++V T
Sbjct: 202 EVFGKGILARTILVFT 217
>sp|Q8ND71|GIMA8_HUMAN GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2
Length = 665
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 12/174 (6%)
Query: 18 PPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRP 77
P + + L+ G + + LT+L++GK G GKS+ NSI+G +A F +
Sbjct: 226 PQGPRERQLQSTGPEQNPGTSELTVLLVGKRGAGKSAAGNSILGRQAFQTG-FSEQSVTQ 284
Query: 78 VMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD 135
+S SR+ ++I+D P + ++ R + L V L Y +
Sbjct: 285 SFLSESRSWRKKKVSIIDAPDISSLKNIDSEV-----RKHICTGPHAFLLVTPLGFYTKN 339
Query: 136 NLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFV 189
D+ + I +NFGE+ ++ +I+LT + L D+ D + F ++AL +
Sbjct: 340 --DEAVLSTIQNNFGEKFFEYMIILLTRKE-DLGDQ-DLDTFLRNSNKALYGLI 389
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 15/156 (9%)
Query: 24 KLLELLGKLKQENVN---------TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG 74
+LLE + + +N N TL I+++G+ G GKS+T NSI+G V S +++
Sbjct: 414 ELLEKIESMVHQNGNKHCVFREKETLNIVLVGRSGTGKSATGNSILG-SLVFTSRLRAQP 472
Query: 75 PRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQL---IKRFLLNKTIDVLLYVDRL 129
S R G + +VDTP + V +L +KR L +V
Sbjct: 473 VTKTSQSGRRTWDGQEVVVVDTPSFNQMLDVEKDPSRLEEEVKRCLSCCEKGDTFFVLVF 532
Query: 130 DVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165
+ R DK + FG K A+++ T +
Sbjct: 533 QLGRFTEEDKTAVAKLEAIFGADFTKYAIMLFTRKE 568
>sp|Q5FVN6|GIMA6_RAT GTPase IMAP family member 6 OS=Rattus norvegicus GN=Gimap6 PE=2
SV=1
Length = 304
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 15/147 (10%)
Query: 27 ELLGKLKQENVNT--LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMV--- 80
EL LK++ + L +L++GK G GKS+T NSI+G + F+S+ RPV +
Sbjct: 88 ELTKDLKEKKLTPKRLQLLLVGKTGSGKSATGNSILGRQ-----VFESKISARPVTMAFQ 142
Query: 81 --SRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD 138
SR G L ++DTP ++ + I L + +L V + V R D
Sbjct: 143 KGSRELEGKELEVIDTPDILSPQNQPEATAKKICDILASPGPHAVLLV--IQVGRYTTED 200
Query: 139 KQITRAITDNFGEQIWKRALIVLTHAQ 165
++ R + + FG I ++V T +
Sbjct: 201 QEAARCLQEIFGNGILAYTILVFTRKE 227
>sp|Q8K349|GIMA6_MOUSE GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1
Length = 305
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMV-----SRSRAGFTLNIVD 93
L +L++GK G GKS+T NSI+G +A F+S+ RPV +R G L ++D
Sbjct: 104 LQLLLVGKTGSGKSATGNSILGRQA-----FESKISARPVTTTFQKGTREFEGKELEVID 158
Query: 94 TPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI 153
TP + + I L + +L V ++ Y + D+ + R + + FG I
Sbjct: 159 TPDIFSPQNQPEATAKKICDLLASPGPHAVLLVIQVGRYTAE--DQAVARCLQEIFGNTI 216
Query: 154 WKRALIVLTHAQ 165
++V T +
Sbjct: 217 LAYTILVFTRKE 228
>sp|A9B567|DER_HERA2 GTPase Der OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM
785) GN=der PE=3 SV=1
Length = 455
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 30 GKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTL 89
G+ ++E+ N+L I ++G+ VGKSS +N ++GE+ V VS + + G +
Sbjct: 173 GQEEEEDDNSLKIAIVGRPNVGKSSLLNKLVGEERVVVSNIPGTTRDSIDTKLTYKGIPI 232
Query: 90 NIVDTPGL-----IEGGYVNYHAIQLIK 112
++DT G+ IE G Y ++ +K
Sbjct: 233 TLIDTAGIRRRGSIEQGIERYSVLRTMK 260
>sp|Q4KLG2|GIMA8_RAT GTPase IMAP family member 8 OS=Rattus norvegicus GN=Gimap8 PE=2
SV=1
Length = 688
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 16/146 (10%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLN-----IVD 93
L I+++G+ GVGKS+T N+I+G A VS +++ PV SRS++G TL+ +VD
Sbjct: 475 LNIILLGRSGVGKSATGNTILGRPAF-VSQLRAQ---PV-TSRSQSGRRTLDWQDIVVVD 529
Query: 94 TPGLIEGGYVNYHAIQL---IKRFLLNKTIDVL-LYVDRLDVYRVDNLDKQITRAITDNF 149
TP L + + QL IK+ LL + + ++V + R D+ + + +F
Sbjct: 530 TPSLNQMSGTEKNPAQLKKEIKQCLLQNCEEGMKVFVLVFQLGRFTQEDEAVVEQLEASF 589
Query: 150 GEQIWKRALIVLTHAQ-LSLPDRLDY 174
E I K +++ T + L D D+
Sbjct: 590 EENIMKYMIVLFTRKEDLGDGDLYDF 615
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 33 KQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE--GPRPVMVSRSRAGFTLN 90
+ + +TL +L++GK G GKS+T N+I+G KAV S F R S S G +
Sbjct: 42 QSQGTSTLRLLLLGKQGAGKSATGNTILG-KAVFESRFSHHMVTKRCQSESVSVRGKQVI 100
Query: 91 IVDTPGLIEG-GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNF 149
++DTP L G L + L VLL V + DK+ I F
Sbjct: 101 VIDTPDLFSSLGCPEVQQQNLRQCLDLLADPYVLLLV--TPIGHSTEEDKKTIEGIQGVF 158
Query: 150 GEQIWKRALIVLT 162
G Q ++ ++V T
Sbjct: 159 GPQAYRHMIVVFT 171
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR 84
L +L+MGK GVGKS+ NSI+G++ + + S SR
Sbjct: 284 LRVLLMGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTEAFASHSR 328
>sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1
Length = 688
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 12/156 (7%)
Query: 12 MGIQQFPPATQTKLLELLGKLKQ-ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF 70
+G + P A+Q + G KQ + +TL +L++GK G GKS+T N+I+G KAV S F
Sbjct: 24 VGQGERPSASQGQE----GNFKQNQGTSTLRLLLLGKQGAGKSATGNTILG-KAVFESKF 78
Query: 71 QSE--GPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF--LLNKTIDVLLYV 126
R S S G + ++DTP L + Q +K+ LL VLL V
Sbjct: 79 SDHMVTDRCQSESVSVRGKQVIVIDTPDLFSSLSCSEVRQQNLKQCLELLADDHCVLLLV 138
Query: 127 DRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162
+ Y + D++ I G + ++ ++V T
Sbjct: 139 TPIGHYTEE--DRETIEGIWGKIGPKAYRHMIVVFT 172
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 17/146 (11%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLN-----IVDT 94
L I+++G+ G GKS+T N+I+G A F +PV S TL+ +VDT
Sbjct: 476 LNIILLGRSGAGKSATGNTILGRSAF----FSQLRAQPVTSSSQSGKRTLDWQDVVVVDT 531
Query: 95 PGLIEGGYVNYHAIQLIKRF-----LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNF 149
P I+ +L + L + + + + V L + R D+ + + +F
Sbjct: 532 PSFIQTPGTEKDPSRLKEEIHHCLSLCEEGMKIFVLV--LQLGRFTQEDEVVVEQLEASF 589
Query: 150 GEQIWKRALIVLTHAQ-LSLPDRLDY 174
E I K +++ T + L D DY
Sbjct: 590 EENIMKYMIVLFTRKEDLGDGDLHDY 615
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 17/132 (12%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGL 97
L +L+MGK GVGKS+ NSI+G++ + + S SR G + I+D+P +
Sbjct: 285 LRVLLMGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTKAFASHSRVWQGKKVLIIDSPEI 344
Query: 98 ----IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI 153
++ V H FLL + L D DV+ + I FGE+
Sbjct: 345 SSWKLDESAVKNHTFPGPHAFLLVTPLGSSLKSDD-DVFSI----------IKRIFGEKF 393
Query: 154 WKRALIVLTHAQ 165
K +++ T +
Sbjct: 394 TKFTIVLFTRKE 405
>sp|B9KFN5|DER_CAMLR GTPase Der OS=Campylobacter lari (strain RM2100 / D67 / ATCC
BAA-1060) GN=der PE=3 SV=1
Length = 461
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 31 KLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLN 90
KLK N N + + ++G+ VGKSS +N+++ E+ VS PV S +
Sbjct: 188 KLKTINENHIKVGIIGRVNVGKSSLLNALVKEERSVVSDIAGTTIDPVNESIMHKDKIIE 247
Query: 91 IVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119
VDT G+ + G IQ ++R+ LN+T
Sbjct: 248 FVDTAGIRKRG-----KIQGLERYALNRT 271
>sp|B0TFW3|DER_HELMI GTPase Der OS=Heliobacterium modesticaldum (strain ATCC 51547 /
Ice1) GN=der PE=3 SV=1
Length = 442
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 33 KQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIV 92
+ ++ +T+ I V+G+ VGKSS VN+I+G++ V VS + + R G ++
Sbjct: 171 EDDDPDTIKIAVIGRPNVGKSSLVNAILGQERVIVSDIPGTTRDAIDTAFDRDGKRYILI 230
Query: 93 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDV 131
DT G+ G + + ++R+ + ++ L +DR DV
Sbjct: 231 DTAGMRRKGRIE----EAVERYSVMRS---LRAIDRSDV 262
>sp|B0K8N3|DER_THEP3 GTPase Der OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=der PE=3 SV=1
Length = 439
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 25 LLELLGKLKQENVN----TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV 80
L E++ KL QE + T+ I V+GK VGKSS VN I+GE+ V VS +
Sbjct: 158 LDEVVKKLPQEELEYTEETIKIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAIDT 217
Query: 81 SRSRAGFTLNIVDTPGL 97
S+ G ++DT G+
Sbjct: 218 PFSKDGKNYVLIDTAGI 234
>sp|Q30TK8|DER_SULDN GTPase Der OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM
1251) GN=der PE=3 SV=1
Length = 494
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 29 LGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT 88
+ + + + N + I ++G+ VGKSS +N+++GE+ VS+ P+ S
Sbjct: 224 IKEFDETDANHIKISIIGRTNVGKSSLLNALLGEERSVVSSVAGTTIDPIDESMEYKDKQ 283
Query: 89 LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123
L VDT GL G I I++F L +T ++L
Sbjct: 284 LTFVDTAGLRRRG-----KIVGIEKFALMRTKEML 313
>sp|B8CWY9|DER_HALOH GTPase Der OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM
9562) GN=der PE=3 SV=1
Length = 438
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
+ + + ++GK VGKSS VN I+G++ V VS + + G N++DT GL
Sbjct: 176 DAIDVAIIGKPNVGKSSLVNYIVGQERVIVSDIPGTTRDAIDTLVEKNGHRYNLIDTAGL 235
Query: 98 IEGGYVN-----YHAIQLIKRFLLNKTIDVLLYVDRLD 130
+ V Y A++ IK ++++ V++ +D L+
Sbjct: 236 RKKSRVKEATEYYSALRTIK--AIDRSDGVIMMIDALE 271
>sp|Q119L7|DER_TRIEI GTPase Der OS=Trichodesmium erythraeum (strain IMS101) GN=der PE=3
SV=1
Length = 453
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
N I ++G+ VGKSS +NS IGEK VS + R G T ++DT G+
Sbjct: 175 NQTKIAIVGRPNVGKSSLLNSFIGEKRAIVSPISGTTRDAIDTVVERNGKTYRLIDTAGI 234
Query: 98 IEGGYVNYHA--IQLIKRFLLNKTIDVLLYV-DRLD 130
+ V Y A + + F + +V+++V D LD
Sbjct: 235 RKKKNVEYGAEFFGINRAFKAIRRAEVVMFVIDALD 270
>sp|B8F4X7|DER_HAEPS GTPase Der OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=der
PE=3 SV=1
Length = 504
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 10 EWMGIQQFPPATQTKLLELLGKLKQENVN--TLTILVMGKGGVGKSSTVNSIIGEKAVTV 67
EW F T LL+ + QE + + I ++G+ VGKS+ N I+GE+ V V
Sbjct: 184 EWDSDFDFDNEEDTALLDEALEEDQEETDDKNIKIAIVGRPNVGKSTLTNRILGEERVVV 243
Query: 68 STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID------ 121
+ + R G I+DT G+ + G V+ +++F + KT+
Sbjct: 244 YDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVHL----AVEKFSVIKTLQAIQDAN 299
Query: 122 -VLLYVDRLD 130
VLL +D D
Sbjct: 300 VVLLTIDARD 309
>sp|B0K3E4|DER_THEPX GTPase Der OS=Thermoanaerobacter sp. (strain X514) GN=der PE=3 SV=1
Length = 439
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 25 LLELLGKLKQENVN----TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV 80
L E++ +L QE + T+ I V+GK VGKSS VN I+GE+ V VS +
Sbjct: 158 LDEVVKRLPQEELEYTEETIKIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAIDT 217
Query: 81 SRSRAGFTLNIVDTPGL 97
S+ G ++DT G+
Sbjct: 218 PFSKDGKNYVLIDTAGI 234
>sp|Q3M929|DER_ANAVT GTPase Der OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937)
GN=der PE=3 SV=1
Length = 453
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 14 IQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE 73
I+ PP T+ +EN N + I ++G+ VGKSS +N+ GE+ V VS
Sbjct: 162 IKHLPPTTEL----------EEN-NEIKIAIIGRPNVGKSSLLNAFAGEERVIVSPISGT 210
Query: 74 GPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA--IQLIKRFLLNKTID-VLLYVDRLD 130
+ R G ++DT G+ + ++Y + + F + D VLL +D LD
Sbjct: 211 TRDAIDTFIERNGQNYRLIDTAGIRKKKSIDYGTEFFSINRAFKAIRRADVVLLVIDALD 270
>sp|Q8YZH7|DER_NOSS1 GTPase Der OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=der PE=3
SV=1
Length = 453
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 14 IQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE 73
I+ PP T+ +EN N + I ++G+ VGKSS +N+ GE+ V VS
Sbjct: 162 IKHLPPVTEL----------EEN-NEIKIAIIGRPNVGKSSLLNAFAGEERVIVSPISGT 210
Query: 74 GPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA--IQLIKRFLLNKTID-VLLYVDRLD 130
+ R G ++DT G+ + ++Y + + F + D VLL +D LD
Sbjct: 211 TRDAIDTFIERDGQNYRLIDTAGIRKKKSIDYGTEFFSINRAFKAIRRADVVLLVIDALD 270
>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1
Length = 300
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVS-TFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
+L I+++GK G GKS+T N+I+GE+ Q+ SR G L +VDTPGL
Sbjct: 8 SLRIVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQKASREWQGRDLLVVDTPGL 67
Query: 98 IE 99
+
Sbjct: 68 FD 69
>sp|Q74JL6|DER_LACJO GTPase Der OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 /
NCC 533) GN=der PE=3 SV=1
Length = 435
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%)
Query: 27 ELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG 86
E K Q ++ V+G+ VGKSS VN+I+GE+ V VS + + + + G
Sbjct: 162 EFGDKANQHEDGSIRFSVIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDG 221
Query: 87 FTLNIVDTPGLIEGGYV 103
IVDT G+ G V
Sbjct: 222 QKYTIVDTAGIRRRGKV 238
>sp|C7LZP1|ERA_ACIFD GTPase Era OS=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM
15462 / NBRC 103882 / ICP) GN=era PE=3 SV=1
Length = 287
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
+ V+G+ VGKSS VN++ GE+A VS + R V V L +VDTPG+
Sbjct: 15 VAVIGRTNVGKSSLVNALAGERATIVSRHPNTTRRSVRVISRVGDAELVLVDTPGI 70
>sp|Q8EUV6|MNME_MYCPE tRNA modification GTPase MnmE OS=Mycoplasma penetrans (strain HF-2)
GN=mnmE PE=3 SV=1
Length = 444
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
N L ++++GK VGKSS +NS+I + VS + V S + G LN +DT G+
Sbjct: 214 NGLNVVIVGKPNVGKSSLLNSLIKKNKAIVSDIKGTTRDLVTESINLEGLLLNFIDTAGI 273
Query: 98 IEG 100
E
Sbjct: 274 RES 276
>sp|Q7NS92|DER_CHRVO GTPase Der OS=Chromobacterium violaceum (strain ATCC 12472 / DSM
30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
GN=der PE=3 SV=1
Length = 469
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 9/105 (8%)
Query: 24 KLLELL-----GKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV 78
+L+EL+ ++++E+ V+G+ VGKS+ VN+I+GE+ V +
Sbjct: 154 ELMELVLEGFPDEVEEEDSRHPKFAVIGRPNVGKSTLVNAILGEERVIAFDQAGTTRDSI 213
Query: 79 MVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123
+ R G T I+DT G+ VN +++++F + KT+ +
Sbjct: 214 YIDFEREGHTYTIIDTAGVRRRAKVN----EMLEKFSVIKTMKAI 254
>sp|Q8K3L6|GIMA5_RAT GTPase IMAP family member 5 OS=Rattus norvegicus GN=Gimap5 PE=2
SV=1
Length = 326
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 88/209 (42%), Gaps = 42/209 (20%)
Query: 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA------GFT 88
E+ L IL++GK G GKS+T NSI+ A F+S + S+A G +
Sbjct: 40 EDSGLLRILLVGKSGCGKSATGNSILRRPA-----FESRLRGQSVTRTSQAEMGTWEGRS 94
Query: 89 LNIVDTPGLIEGGYVNYHAIQLIKR--FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAIT 146
+VDTP + E N + I + VLL V +L Y V+ D R +
Sbjct: 95 FLVVDTPPIFESKIQNQDMDKDIGNCYLMCAPGPHVLLLVTQLGRYTVE--DAMAVRMVK 152
Query: 147 DNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVP 206
FG + + +++ TH + L D E+L +FV+ + G+
Sbjct: 153 QIFGVGVMRYMIVLFTHKE-DLAD------------ESLEEFVTHT---------GNLDL 190
Query: 207 VVLVENSGR--CA---KNENDEKVSQLPD 230
LV+ GR CA K +E+ QL +
Sbjct: 191 HRLVQECGRRYCAFNNKASGEEQQGQLAE 219
>sp|B1XLH8|DER_SYNP2 GTPase Der OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
PR-6) GN=der PE=3 SV=1
Length = 453
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 24 KLLELLGKLKQ-ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR 82
K++E L + E T+ + ++G+ VGKSS +N++ GE+ VS +
Sbjct: 160 KVIEYLPTITDVEEDTTINVAIIGRPNVGKSSLLNALTGEQRAIVSPISGTTRDAIDTII 219
Query: 83 SRAGFTLNIVDTPGLIEGGYVNYHA--IQLIKRFLLNKTIDVLLYV-DRLD 130
R G ++DT G+ V+Y A + + F + DV+L+V D LD
Sbjct: 220 ERNGQQYRLIDTAGIRRKKNVDYGAEFFSINRAFKAIRRADVVLFVIDVLD 270
>sp|B8G2P9|DER_DESHD GTPase Der OS=Desulfitobacterium hafniense (strain DCB-2 / DSM
10664) GN=der PE=3 SV=1
Length = 441
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
+T+ I V+G+ VGKSS VN+++GE+ V VS + + G I+DT G+
Sbjct: 175 DTIRIAVVGRPNVGKSSLVNTLLGEERVIVSNIPGTTRDAIDSAFEHEGKHYIIIDTAGM 234
Query: 98 IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDV 131
G + +L +++ ++++ L VDR DV
Sbjct: 235 RRKGRIE----ELTEQYSVSRS---LRAVDRSDV 261
>sp|A5N6N6|ERA_CLOK5 GTPase Era OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 /
NCIMB 10680) GN=era PE=3 SV=1
Length = 293
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
I ++G+ VGKS+ +NSI+GEK VS + +R F L VDTPG+
Sbjct: 7 ITIIGRPNVGKSTLLNSIMGEKLSIVSCKPQTTRNSIQTILTRDDFQLIFVDTPGI 62
>sp|B9E055|ERA_CLOK1 GTPase Era OS=Clostridium kluyveri (strain NBRC 12016) GN=era
PE=3 SV=1
Length = 293
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
I ++G+ VGKS+ +NSI+GEK VS + +R F L VDTPG+
Sbjct: 7 ITIIGRPNVGKSTLLNSIMGEKLSIVSCKPQTTRNSIQTILTRDDFQLIFVDTPGI 62
>sp|Q24VA2|DER_DESHY GTPase Der OS=Desulfitobacterium hafniense (strain Y51) GN=der PE=3
SV=1
Length = 441
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
+T+ I V+G+ VGKSS VN+++GE+ V VS + + G I+DT G+
Sbjct: 175 DTIRIAVVGRPNVGKSSLVNTLLGEERVIVSNIPGTTRDAIDSAFEHEGKHYIIIDTAGM 234
Query: 98 IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDV 131
G + +L +++ ++++ L VDR DV
Sbjct: 235 RRKGRIE----ELTEQYSVSRS---LRAVDRSDV 261
>sp|Q7VM29|DER_HAEDU GTPase Der OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724)
GN=der PE=3 SV=1
Length = 510
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 10 EWMGIQQFPPATQTKLL-ELLGKLKQENV--NTLTILVMGKGGVGKSSTVNSIIGEKAVT 66
EW F T LL E L + E++ + I ++G+ VGKS+ N I+GE+ V
Sbjct: 187 EWNQDFDFNNEEDTALLDEALDEENSESIADKNIKIAIIGRPNVGKSTLTNRILGEERVV 246
Query: 67 VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123
V + + R G I+DT G+ + G +N +++F + KT+ +
Sbjct: 247 VYDMPGTTRDSIYIPMERDGQEYTIIDTAGVRKRGKINL----AVEKFSVIKTLQAI 299
>sp|A4J3P1|DER_DESRM GTPase Der OS=Desulfotomaculum reducens (strain MI-1) GN=der PE=3
SV=1
Length = 439
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
+T+ I V+G+ VGKSS VN+I+GE+ V VS + S + G +VDT G+
Sbjct: 173 DTIRIAVIGRPNVGKSSLVNTILGEERVIVSNIPGTTRDAIDSSFEKNGKNYVLVDTAGM 232
>sp|Q3UM18|LSG1_MOUSE Large subunit GTPase 1 homolog OS=Mus musculus GN=Lsg1 PE=2 SV=2
Length = 644
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 20/97 (20%)
Query: 21 TQTKLLELLGKL---KQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST-------F 70
++ +LLEL KL K+ LT+ ++G VGKSST+N+I+G K V+VS F
Sbjct: 351 SKQELLELFKKLHTGKKVKDGQLTVGLVGYPNVGKSSTINTIMGNKKVSVSATPGHTKHF 410
Query: 71 QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 107
Q+ P L + D PGL+ +V+ A
Sbjct: 411 QTLYVEP----------GLCLCDCPGLVMPSFVSTKA 437
>sp|Q5BJT6|LSG1_RAT Large subunit GTPase 1 homolog OS=Rattus norvegicus GN=Lsg1 PE=2
SV=1
Length = 655
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 20/97 (20%)
Query: 21 TQTKLLELLGKL---KQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST-------F 70
++ +LLEL KL K+ LT+ ++G VGKSST+N+I+G K V+VS F
Sbjct: 362 SKQELLELFKKLHTGKKVKDGQLTVGLVGYPNVGKSSTINTIMGNKKVSVSATPGHTKHF 421
Query: 71 QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 107
Q+ P L + D PGL+ +V+ A
Sbjct: 422 QTLYVEP----------GLCLCDCPGLVMPSFVSTKA 448
>sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1
Length = 329
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 30 GKLKQENVNT-LTILVMGKGGVGKSSTVNSIIGEKAVTVST-FQSEGPRPVMVSRSRAGF 87
G +QE N+ L I+++GK G GKS+T NSI+G K T +S + S S
Sbjct: 20 GPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET 79
Query: 88 TLNIVDTPGLIEGGYVNYHAIQLIKR--FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAI 145
L +VDTPG+ + N + I R L + LL V L Y + + + T I
Sbjct: 80 ELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKI 137
Query: 146 TDNFGEQIWKRALIVLT 162
FGE+ +++ T
Sbjct: 138 LKMFGERARSFMILIFT 154
>sp|P74120|DER_SYNY3 GTPase Der OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=der
PE=3 SV=1
Length = 452
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 25 LLELLGKLKQE-NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS 83
LLE L ++E + + + ++G+ VGKSS +N++ GE+ VS + +
Sbjct: 161 LLEYLPAPQEEPEEDEIKVAIVGRPNVGKSSLLNALTGEQRAIVSPISGTTRDAIDMVVE 220
Query: 84 RAGFTLNIVDTPGLIEGGYVNYHA--IQLIKRFLLNKTIDVLLYVDRLDV 131
R G ++DT G+ V+Y A + + F + DV+L+V LDV
Sbjct: 221 RNGQKYRLIDTAGIRRKKNVDYGAEFFGINRAFKAIRRADVVLFV--LDV 268
>sp|Q1GXL7|MNME_METFK tRNA modification GTPase MnmE OS=Methylobacillus flagellatus
(strain KT / ATCC 51484 / DSM 6875) GN=mnmE PE=3 SV=1
Length = 446
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIE 99
L ++++G+ VGKSS +N + GE+ V+ + S G TL+I DT GL E
Sbjct: 216 LQVVLVGQPNVGKSSLMNQLAGEEVAIVTPIAGTTRDTIKNSIQINGITLHITDTAGLRE 275
Query: 100 -GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIW 154
V H I R L N + LL VD + + ++K I A F +IW
Sbjct: 276 TNDEVEQHGIARTWRALENAGV-ALLLVDA--AHGIGKVEKSIL-ARLPQFLPKIW 327
>sp|Q7VDI8|DER_PROMA GTPase Der OS=Prochlorococcus marinus (strain SARG / CCMP1375 /
SS120) GN=der PE=3 SV=1
Length = 456
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Query: 1 MSMASQVIREWMG----IQQFPPATQTKLLELL------GKLKQENVNTLTILVMGKGGV 50
+SMA + R +G + A +LL+ L +L ++ + + ++G+ V
Sbjct: 129 LSMAGEFWRLGLGEPYPVSAIHGAGTGELLDRLISILPPKELIKDEEEPIQVAIVGRPNV 188
Query: 51 GKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY 105
GKSS +N+I GEK VS + + S R G ++DT G+ VNY
Sbjct: 189 GKSSLLNAICGEKRAIVSAIRGTTRDTIDTSIVREGKLWKLIDTAGIRRRKSVNY 243
>sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2
SV=1
Length = 310
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKA----VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTP 95
L I+++GK G GKSST NSI+G KA + + + V + G L +VDTP
Sbjct: 31 LRIVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCEKGVSI---WDGKELVVVDTP 87
Query: 96 GLIEGGYVNYHAIQLIKR--FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI 153
G+ + + + I R L + LL V L Y V+ + + TR + F E+
Sbjct: 88 GIFDTEVPDADTQKEITRCVALTSPGPHALLLVIPLGCYTVE--EHKATRKLLSMF-EKK 144
Query: 154 WKRALIVLTHAQLSLPD 170
+R +I+L + L D
Sbjct: 145 ARRFMILLLTRKDDLED 161
>sp|Q46ZI7|DER_CUPPJ GTPase Der OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197)
GN=der PE=3 SV=1
Length = 447
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 31 KLKQENVNT---LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF 87
+L +E+ ++ + I ++G+ VGKS+ VN++IGE+ V + V R G
Sbjct: 169 ELAEEDADSGKGVKIAIVGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYVEFERGGK 228
Query: 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120
++DT GL G V + I++F + KT+
Sbjct: 229 PYTLIDTAGLRRRGKV----FEAIEKFSVVKTL 257
>sp|B2J1L2|DER_NOSP7 GTPase Der OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
GN=der PE=3 SV=1
Length = 456
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
N + + ++G+ VGKSS +N+ +GE+ VS + R G T ++DT G+
Sbjct: 175 NEIKVAIVGRPNVGKSSLLNAFVGEERAIVSPISGTTRDAIDTVIERDGQTYRLIDTAGI 234
Query: 98 IEGGYVNYHA--IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQ 140
+ ++ Y + + F + DV+L V LD VD + +Q
Sbjct: 235 RKKKHIEYGTEFFSINRAFKAIRRADVVLLV--LDA--VDGVTEQ 275
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,165,672
Number of Sequences: 539616
Number of extensions: 3479101
Number of successful extensions: 14520
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 591
Number of HSP's that attempted gapping in prelim test: 13730
Number of HSP's gapped (non-prelim): 1348
length of query: 243
length of database: 191,569,459
effective HSP length: 114
effective length of query: 129
effective length of database: 130,053,235
effective search space: 16776867315
effective search space used: 16776867315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)