Query 026113
Match_columns 243
No_of_seqs 190 out of 2281
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:56:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00991 3a0901s02IAP34 GTP-b 100.0 5.2E-43 1.1E-47 292.3 21.3 234 3-238 1-235 (313)
2 cd01853 Toc34_like Toc34-like 100.0 5.3E-36 1.2E-40 246.9 19.8 226 10-238 2-231 (249)
3 TIGR00993 3a0901s04IAP86 chlor 100.0 5.6E-33 1.2E-37 248.6 20.6 198 38-238 117-323 (763)
4 PF04548 AIG1: AIG1 family; I 100.0 8.8E-32 1.9E-36 217.8 15.0 182 40-225 1-201 (212)
5 cd01852 AIG1 AIG1 (avrRpt2-ind 100.0 4.3E-28 9.4E-33 194.1 18.4 179 40-222 1-196 (196)
6 COG3596 Predicted GTPase [Gene 99.9 7E-21 1.5E-25 154.6 14.3 175 11-191 11-195 (296)
7 PF01926 MMR_HSR1: 50S ribosom 99.8 1.6E-18 3.5E-23 127.0 13.7 114 41-163 1-116 (116)
8 PF02421 FeoB_N: Ferrous iron 99.8 1.5E-18 3.3E-23 132.6 12.4 122 40-171 1-122 (156)
9 COG1159 Era GTPase [General fu 99.8 3.7E-18 8E-23 140.5 13.9 124 38-169 5-129 (298)
10 COG1160 Predicted GTPases [Gen 99.8 3E-18 6.5E-23 148.3 13.8 120 40-167 4-125 (444)
11 COG1160 Predicted GTPases [Gen 99.8 4.4E-18 9.6E-23 147.3 10.6 137 38-180 177-315 (444)
12 COG1084 Predicted GTPase [Gene 99.8 2.3E-17 5E-22 137.1 14.0 135 28-167 157-293 (346)
13 COG0486 ThdF Predicted GTPase 99.7 4.9E-17 1.1E-21 141.2 15.0 124 37-169 215-339 (454)
14 cd01898 Obg Obg subfamily. Th 99.7 1E-16 2.2E-21 124.8 12.7 125 41-168 2-128 (170)
15 KOG0084 GTPase Rab1/YPT1, smal 99.7 1.7E-16 3.7E-21 122.7 13.5 128 38-177 8-137 (205)
16 TIGR00436 era GTP-binding prot 99.7 1.2E-16 2.6E-21 134.0 13.8 118 41-167 2-120 (270)
17 cd01897 NOG NOG1 is a nucleola 99.7 3.2E-16 6.9E-21 121.8 14.0 122 40-167 1-126 (168)
18 TIGR03598 GTPase_YsxC ribosome 99.7 7.7E-16 1.7E-20 121.4 16.1 122 37-167 16-142 (179)
19 cd01850 CDC_Septin CDC/Septin. 99.7 9.7E-16 2.1E-20 128.6 17.5 124 38-167 3-156 (276)
20 PRK15494 era GTPase Era; Provi 99.7 4.4E-16 9.6E-21 134.4 15.6 122 38-167 51-173 (339)
21 cd01895 EngA2 EngA2 subfamily. 99.7 7.6E-16 1.7E-20 119.6 15.4 126 38-169 1-128 (174)
22 cd04164 trmE TrmE (MnmE, ThdF, 99.7 8.2E-16 1.8E-20 117.6 15.3 119 40-168 2-121 (157)
23 cd01894 EngA1 EngA1 subfamily. 99.7 2.6E-16 5.6E-21 120.5 12.1 117 43-167 1-118 (157)
24 cd04163 Era Era subfamily. Er 99.7 9.5E-16 2.1E-20 118.0 14.8 122 38-167 2-124 (168)
25 TIGR03156 GTP_HflX GTP-binding 99.7 9.5E-16 2.1E-20 132.7 16.1 125 38-167 188-314 (351)
26 PRK00089 era GTPase Era; Revie 99.7 7.9E-16 1.7E-20 130.5 15.3 122 38-167 4-126 (292)
27 KOG0092 GTPase Rab5/YPT51 and 99.7 1.7E-16 3.7E-21 122.2 10.1 128 38-177 4-133 (200)
28 cd04119 RJL RJL (RabJ-Like) su 99.7 2.5E-15 5.5E-20 116.3 16.2 119 40-168 1-124 (168)
29 cd04104 p47_IIGP_like p47 (47- 99.7 9.8E-16 2.1E-20 122.7 13.8 117 39-168 1-121 (197)
30 cd04140 ARHI_like ARHI subfami 99.7 1.1E-15 2.4E-20 118.7 13.7 122 40-171 2-125 (165)
31 TIGR03594 GTPase_EngA ribosome 99.7 1.5E-15 3.2E-20 135.4 15.9 120 41-168 1-121 (429)
32 cd01864 Rab19 Rab19 subfamily. 99.7 5E-15 1.1E-19 114.9 16.3 121 39-171 3-125 (165)
33 cd01861 Rab6 Rab6 subfamily. 99.7 2.3E-15 5E-20 116.0 14.3 118 40-169 1-120 (161)
34 PRK05291 trmE tRNA modificatio 99.7 2E-15 4.3E-20 134.9 15.8 121 38-168 214-335 (449)
35 TIGR00450 mnmE_trmE_thdF tRNA 99.7 2.2E-15 4.8E-20 134.0 16.0 122 37-167 201-323 (442)
36 PRK03003 GTP-binding protein D 99.7 1.9E-15 4.2E-20 136.0 15.9 123 37-167 36-159 (472)
37 COG0218 Predicted GTPase [Gene 99.7 1.5E-15 3.2E-20 118.9 13.0 121 38-168 23-149 (200)
38 PRK00093 GTP-binding protein D 99.7 1.8E-15 3.8E-20 135.2 15.2 120 40-167 2-122 (435)
39 PRK12299 obgE GTPase CgtA; Rev 99.7 2.2E-15 4.8E-20 129.5 14.9 125 40-167 159-284 (335)
40 PRK03003 GTP-binding protein D 99.7 1.5E-15 3.3E-20 136.7 14.6 124 38-167 210-335 (472)
41 cd04136 Rap_like Rap-like subf 99.7 3.7E-15 7.9E-20 115.0 14.8 118 39-168 1-120 (163)
42 cd04120 Rab12 Rab12 subfamily. 99.7 4.9E-15 1.1E-19 118.9 15.8 122 40-173 1-124 (202)
43 cd01878 HflX HflX subfamily. 99.7 5.5E-15 1.2E-19 118.8 15.6 125 38-167 40-166 (204)
44 PRK12298 obgE GTPase CgtA; Rev 99.7 3.7E-15 7.9E-20 130.6 15.6 124 41-167 161-288 (390)
45 cd01867 Rab8_Rab10_Rab13_like 99.7 1E-14 2.2E-19 113.5 16.3 123 39-173 3-127 (167)
46 cd01865 Rab3 Rab3 subfamily. 99.7 8.9E-15 1.9E-19 113.6 15.9 120 40-171 2-123 (165)
47 cd01881 Obg_like The Obg-like 99.7 6.9E-16 1.5E-20 120.5 9.6 121 44-167 1-133 (176)
48 TIGR03594 GTPase_EngA ribosome 99.7 3.5E-15 7.6E-20 133.0 15.4 124 38-167 171-296 (429)
49 cd01868 Rab11_like Rab11-like. 99.6 1.1E-14 2.3E-19 112.9 16.0 121 39-171 3-125 (165)
50 cd04142 RRP22 RRP22 subfamily. 99.6 7.9E-15 1.7E-19 117.5 15.6 126 40-168 1-130 (198)
51 cd01879 FeoB Ferrous iron tran 99.6 3.8E-15 8.1E-20 114.3 13.3 115 44-168 1-115 (158)
52 cd04145 M_R_Ras_like M-Ras/R-R 99.6 6.2E-15 1.4E-19 113.9 14.6 119 39-169 2-122 (164)
53 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.6 1E-15 2.2E-20 118.2 9.7 130 38-178 21-152 (221)
54 cd04122 Rab14 Rab14 subfamily. 99.6 1.5E-14 3.2E-19 112.4 16.4 121 40-173 3-126 (166)
55 cd01866 Rab2 Rab2 subfamily. 99.6 1.4E-14 3E-19 112.9 16.2 124 39-174 4-129 (168)
56 cd04106 Rab23_lke Rab23-like s 99.6 1E-14 2.2E-19 112.5 15.0 121 40-173 1-125 (162)
57 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 1.4E-14 3.1E-19 112.4 15.9 123 39-173 2-126 (166)
58 cd04175 Rap1 Rap1 subgroup. T 99.6 9.2E-15 2E-19 113.2 14.8 118 39-168 1-120 (164)
59 TIGR02729 Obg_CgtA Obg family 99.6 6.2E-15 1.3E-19 126.6 15.1 125 40-167 158-286 (329)
60 cd04112 Rab26 Rab26 subfamily. 99.6 1.2E-14 2.5E-19 115.8 15.7 120 40-170 1-122 (191)
61 cd04109 Rab28 Rab28 subfamily. 99.6 1.1E-14 2.4E-19 118.1 15.7 123 40-172 1-127 (215)
62 cd04113 Rab4 Rab4 subfamily. 99.6 1.4E-14 3.1E-19 111.7 15.6 118 40-169 1-120 (161)
63 cd04121 Rab40 Rab40 subfamily. 99.6 9.1E-15 2E-19 116.3 14.7 124 38-174 5-130 (189)
64 cd04127 Rab27A Rab27a subfamil 99.6 1.7E-14 3.7E-19 113.4 16.1 125 38-173 3-139 (180)
65 cd04176 Rap2 Rap2 subgroup. T 99.6 1.1E-14 2.4E-19 112.5 14.8 118 39-168 1-120 (163)
66 cd01860 Rab5_related Rab5-rela 99.6 1.1E-14 2.5E-19 112.3 14.7 118 39-168 1-120 (163)
67 smart00175 RAB Rab subfamily o 99.6 1.9E-14 4E-19 111.1 15.8 122 40-173 1-124 (164)
68 KOG0078 GTP-binding protein SE 99.6 5.6E-15 1.2E-19 115.8 12.8 127 38-176 11-139 (207)
69 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 1E-14 2.2E-19 114.3 14.2 124 39-174 2-127 (172)
70 cd04146 RERG_RasL11_like RERG/ 99.6 8.6E-15 1.9E-19 113.6 13.5 119 41-169 1-121 (165)
71 KOG0087 GTPase Rab11/YPT3, sma 99.6 1.2E-15 2.5E-20 119.3 8.4 144 38-193 13-158 (222)
72 PRK00093 GTP-binding protein D 99.6 1E-14 2.2E-19 130.3 15.7 124 38-167 172-297 (435)
73 smart00173 RAS Ras subfamily o 99.6 1.3E-14 2.9E-19 112.2 14.4 117 40-168 1-119 (164)
74 cd04144 Ras2 Ras2 subfamily. 99.6 1.3E-14 2.9E-19 115.4 14.6 122 41-173 1-125 (190)
75 cd04138 H_N_K_Ras_like H-Ras/N 99.6 1.3E-14 2.9E-19 111.5 14.1 116 40-167 2-119 (162)
76 KOG1191 Mitochondrial GTPase [ 99.6 5.1E-15 1.1E-19 128.7 12.8 133 36-169 265-404 (531)
77 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 2.1E-14 4.6E-19 115.2 15.6 124 40-173 1-129 (201)
78 KOG1547 Septin CDC10 and relat 99.6 1.6E-14 3.5E-19 115.2 14.5 189 30-234 38-268 (336)
79 cd04117 Rab15 Rab15 subfamily. 99.6 1.6E-14 3.5E-19 111.8 14.2 122 40-173 1-124 (161)
80 PRK11058 GTPase HflX; Provisio 99.6 1.1E-14 2.3E-19 129.1 14.6 123 40-167 198-322 (426)
81 cd04110 Rab35 Rab35 subfamily. 99.6 3.1E-14 6.8E-19 114.1 16.0 121 38-171 5-127 (199)
82 PRK12297 obgE GTPase CgtA; Rev 99.6 9.7E-15 2.1E-19 128.7 14.2 124 41-167 160-287 (424)
83 cd04131 Rnd Rnd subfamily. Th 99.6 2.4E-14 5.3E-19 112.8 15.1 115 39-167 1-118 (178)
84 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 3.5E-14 7.6E-19 112.2 15.9 116 38-167 4-122 (182)
85 cd04124 RabL2 RabL2 subfamily. 99.6 1.9E-14 4.1E-19 111.3 13.8 115 40-167 1-117 (161)
86 PTZ00369 Ras-like protein; Pro 99.6 1.8E-14 3.9E-19 114.5 13.9 119 38-168 4-124 (189)
87 cd04154 Arl2 Arl2 subfamily. 99.6 1.1E-14 2.3E-19 114.0 12.3 125 28-167 4-128 (173)
88 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 2.7E-14 5.9E-19 111.6 14.2 118 41-169 2-121 (170)
89 cd04115 Rab33B_Rab33A Rab33B/R 99.6 1.4E-14 3.1E-19 113.0 12.6 123 39-171 2-126 (170)
90 cd00157 Rho Rho (Ras homology) 99.6 6.9E-15 1.5E-19 114.4 10.8 116 40-169 1-119 (171)
91 cd04177 RSR1 RSR1 subgroup. R 99.6 2.8E-14 6.1E-19 111.1 14.1 121 39-171 1-123 (168)
92 cd04171 SelB SelB subfamily. 99.6 2.2E-14 4.7E-19 110.6 13.3 113 41-167 2-117 (164)
93 cd01874 Cdc42 Cdc42 subfamily. 99.6 1.3E-14 2.9E-19 113.9 12.2 114 40-167 2-118 (175)
94 PLN03118 Rab family protein; P 99.6 3.1E-14 6.6E-19 115.2 14.4 123 38-172 13-138 (211)
95 cd04123 Rab21 Rab21 subfamily. 99.6 7E-14 1.5E-18 107.5 15.7 117 40-168 1-119 (162)
96 PLN03110 Rab GTPase; Provision 99.6 5.4E-14 1.2E-18 114.2 15.8 123 38-172 11-135 (216)
97 cd00154 Rab Rab family. Rab G 99.6 3.7E-14 7.9E-19 108.2 14.1 116 40-167 1-118 (159)
98 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 6E-14 1.3E-18 114.8 15.9 116 38-167 12-130 (232)
99 cd04125 RabA_like RabA-like su 99.6 6.4E-14 1.4E-18 111.2 15.6 119 40-170 1-121 (188)
100 cd04133 Rop_like Rop subfamily 99.6 4.5E-14 9.8E-19 111.0 14.5 115 40-168 2-119 (176)
101 PRK09518 bifunctional cytidyla 99.6 2.2E-14 4.8E-19 135.0 15.1 120 40-167 276-396 (712)
102 cd04102 RabL3 RabL3 (Rab-like3 99.6 6.7E-14 1.5E-18 112.3 15.7 120 40-169 1-144 (202)
103 cd01862 Rab7 Rab7 subfamily. 99.6 4.9E-14 1.1E-18 109.7 14.6 122 40-171 1-126 (172)
104 cd01893 Miro1 Miro1 subfamily. 99.6 2.2E-14 4.7E-19 111.5 12.3 115 40-169 1-118 (166)
105 cd04101 RabL4 RabL4 (Rab-like4 99.6 8.6E-14 1.9E-18 107.6 15.5 118 40-169 1-122 (164)
106 smart00178 SAR Sar1p-like memb 99.6 7.3E-14 1.6E-18 110.6 15.3 117 37-167 15-131 (184)
107 PRK09518 bifunctional cytidyla 99.6 3.3E-14 7.1E-19 133.9 15.5 124 38-167 449-574 (712)
108 cd04143 Rhes_like Rhes_like su 99.6 6.2E-14 1.3E-18 116.0 15.4 125 40-175 1-134 (247)
109 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 3.2E-14 7E-19 112.5 13.1 118 38-167 2-122 (183)
110 PRK12296 obgE GTPase CgtA; Rev 99.6 3.8E-14 8.3E-19 126.6 14.9 127 38-167 158-297 (500)
111 cd01875 RhoG RhoG subfamily. 99.6 4.7E-14 1E-18 112.4 14.0 116 38-167 2-120 (191)
112 cd00877 Ran Ran (Ras-related n 99.6 3.6E-14 7.8E-19 110.4 13.0 115 40-167 1-117 (166)
113 cd04126 Rab20 Rab20 subfamily. 99.6 4.6E-14 1E-18 114.7 14.1 114 40-168 1-114 (220)
114 cd04118 Rab24 Rab24 subfamily. 99.6 2.4E-14 5.2E-19 114.0 12.2 115 40-167 1-118 (193)
115 KOG0080 GTPase Rab18, small G 99.6 7.2E-15 1.6E-19 110.0 8.4 149 38-198 10-161 (209)
116 PF00735 Septin: Septin; Inte 99.6 2.4E-14 5.1E-19 120.3 12.6 123 39-167 4-155 (281)
117 PF08477 Miro: Miro-like prote 99.6 9.3E-15 2E-19 107.2 8.9 116 41-165 1-119 (119)
118 cd04149 Arf6 Arf6 subfamily. 99.6 6.6E-14 1.4E-18 109.2 14.3 113 38-167 8-123 (168)
119 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 5.5E-14 1.2E-18 114.3 14.3 114 40-167 2-118 (222)
120 cd04116 Rab9 Rab9 subfamily. 99.6 1.3E-13 2.7E-18 107.4 15.7 120 38-167 4-127 (170)
121 cd04148 RGK RGK subfamily. Th 99.6 5.2E-14 1.1E-18 114.7 13.9 121 40-173 1-125 (221)
122 cd01863 Rab18 Rab18 subfamily. 99.6 5.1E-14 1.1E-18 108.5 13.2 117 40-167 1-119 (161)
123 cd04160 Arfrp1 Arfrp1 subfamil 99.6 5.1E-14 1.1E-18 109.2 12.9 117 41-167 1-120 (167)
124 cd04158 ARD1 ARD1 subfamily. 99.6 9.3E-14 2E-18 108.4 14.3 113 41-167 1-113 (169)
125 cd04111 Rab39 Rab39 subfamily. 99.6 8E-14 1.7E-18 112.8 14.4 122 39-171 2-126 (211)
126 cd04134 Rho3 Rho3 subfamily. 99.6 2.2E-14 4.7E-19 114.1 10.9 115 40-168 1-118 (189)
127 PRK00454 engB GTP-binding prot 99.6 2.1E-13 4.6E-18 108.6 16.4 121 38-167 23-148 (196)
128 PRK04213 GTP-binding protein; 99.6 8.2E-14 1.8E-18 111.6 13.9 120 38-167 8-143 (201)
129 cd04128 Spg1 Spg1p. Spg1p (se 99.6 1.6E-13 3.5E-18 108.4 15.4 115 40-167 1-117 (182)
130 KOG0079 GTP-binding protein H- 99.6 2.3E-14 4.9E-19 105.9 9.5 123 40-175 9-133 (198)
131 cd04132 Rho4_like Rho4-like su 99.6 7.1E-14 1.5E-18 110.6 13.2 115 40-168 1-119 (187)
132 smart00177 ARF ARF-like small 99.6 1.1E-13 2.4E-18 108.7 14.1 116 37-167 11-127 (175)
133 smart00174 RHO Rho (Ras homolo 99.6 2.4E-14 5.3E-19 111.8 10.3 112 42-167 1-115 (174)
134 cd04157 Arl6 Arl6 subfamily. 99.6 5.6E-14 1.2E-18 108.3 12.2 116 41-167 1-117 (162)
135 cd00876 Ras Ras family. The R 99.6 1.1E-13 2.3E-18 106.3 13.7 116 41-168 1-118 (160)
136 cd04139 RalA_RalB RalA/RalB su 99.6 1.3E-13 2.8E-18 106.3 14.2 117 40-168 1-119 (164)
137 PLN03108 Rab family protein; P 99.6 2.8E-13 6.2E-18 109.5 16.6 126 38-175 5-132 (210)
138 cd01871 Rac1_like Rac1-like su 99.6 8.8E-14 1.9E-18 109.2 13.3 114 40-167 2-118 (174)
139 PLN03071 GTP-binding nuclear p 99.6 6.9E-14 1.5E-18 113.8 12.8 118 37-167 11-130 (219)
140 cd04114 Rab30 Rab30 subfamily. 99.6 1.1E-13 2.5E-18 107.4 13.5 120 38-169 6-127 (169)
141 cd01896 DRG The developmentall 99.6 1.5E-13 3.3E-18 112.8 14.8 87 41-130 2-88 (233)
142 KOG0098 GTPase Rab2, small G p 99.6 1.3E-13 2.8E-18 105.8 13.1 126 39-176 6-133 (216)
143 PF00071 Ras: Ras family; Int 99.6 1.1E-13 2.3E-18 106.9 12.9 123 41-175 1-125 (162)
144 cd00880 Era_like Era (E. coli 99.6 9.2E-14 2E-18 105.7 12.4 117 44-168 1-118 (163)
145 cd04161 Arl2l1_Arl13_like Arl2 99.5 1.5E-13 3.3E-18 107.0 13.7 113 41-167 1-113 (167)
146 PTZ00133 ADP-ribosylation fact 99.5 1.6E-13 3.4E-18 108.5 13.9 116 37-167 15-131 (182)
147 COG0370 FeoB Fe2+ transport sy 99.5 8.4E-14 1.8E-18 126.0 13.7 125 38-173 2-127 (653)
148 PLN00223 ADP-ribosylation fact 99.5 3.1E-13 6.7E-18 106.8 15.4 115 37-167 15-131 (181)
149 cd00878 Arf_Arl Arf (ADP-ribos 99.5 1.2E-13 2.7E-18 106.1 12.8 113 41-167 1-113 (158)
150 cd04130 Wrch_1 Wrch-1 subfamil 99.5 6.6E-14 1.4E-18 109.6 11.1 114 40-167 1-117 (173)
151 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 1.6E-13 3.4E-18 106.4 13.1 111 41-167 2-115 (168)
152 KOG1490 GTP-binding protein CR 99.5 1.7E-14 3.7E-19 125.5 8.3 144 28-175 157-302 (620)
153 PF05049 IIGP: Interferon-indu 99.5 4.9E-14 1.1E-18 121.4 11.0 116 37-166 33-153 (376)
154 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 2.8E-13 6.1E-18 106.2 14.5 116 38-167 14-129 (174)
155 cd04135 Tc10 TC10 subfamily. 99.5 6.8E-14 1.5E-18 109.3 10.8 114 40-167 1-117 (174)
156 cd04150 Arf1_5_like Arf1-Arf5- 99.5 1.5E-13 3.3E-18 106.1 12.6 113 40-167 1-114 (159)
157 cd00879 Sar1 Sar1 subfamily. 99.5 2E-13 4.4E-18 108.3 13.7 117 37-167 17-133 (190)
158 cd04147 Ras_dva Ras-dva subfam 99.5 2.9E-13 6.3E-18 108.4 14.5 116 41-168 1-118 (198)
159 TIGR00231 small_GTP small GTP- 99.5 3.1E-13 6.8E-18 102.6 14.0 117 39-167 1-121 (161)
160 cd01892 Miro2 Miro2 subfamily. 99.5 5E-13 1.1E-17 104.3 15.2 117 38-167 3-121 (169)
161 PRK09554 feoB ferrous iron tra 99.5 2.3E-13 5.1E-18 128.2 15.8 123 38-169 2-127 (772)
162 cd04155 Arl3 Arl3 subfamily. 99.5 4.5E-13 9.7E-18 104.5 14.5 117 37-167 12-128 (173)
163 cd04162 Arl9_Arfrp2_like Arl9/ 99.5 3.2E-13 7E-18 104.9 13.4 112 41-167 1-112 (164)
164 KOG0095 GTPase Rab30, small G 99.5 5.6E-13 1.2E-17 98.7 13.4 121 39-172 7-130 (213)
165 cd04151 Arl1 Arl1 subfamily. 99.5 2E-13 4.4E-18 105.1 11.6 112 41-167 1-113 (158)
166 cd01891 TypA_BipA TypA (tyrosi 99.5 7.4E-13 1.6E-17 105.6 15.2 113 40-167 3-130 (194)
167 KOG1423 Ras-like GTPase ERA [C 99.5 1.7E-13 3.7E-18 112.9 11.6 127 35-168 68-199 (379)
168 cd00881 GTP_translation_factor 99.5 4.5E-13 9.7E-18 105.7 13.8 112 41-167 1-127 (189)
169 cd04166 CysN_ATPS CysN_ATPS su 99.5 9.4E-14 2E-18 112.1 10.0 113 41-167 1-143 (208)
170 cd04156 ARLTS1 ARLTS1 subfamil 99.5 2.8E-13 6.1E-18 104.3 12.2 112 41-167 1-114 (160)
171 cd01870 RhoA_like RhoA-like su 99.5 2.2E-13 4.7E-18 106.5 11.7 114 40-167 2-118 (175)
172 cd04137 RheB Rheb (Ras Homolog 99.5 4.7E-13 1E-17 105.2 13.6 119 40-170 2-122 (180)
173 PLN00023 GTP-binding protein; 99.5 4.8E-13 1E-17 113.2 14.1 121 38-168 20-165 (334)
174 cd04103 Centaurin_gamma Centau 99.5 7.4E-13 1.6E-17 102.3 13.5 110 40-167 1-112 (158)
175 cd04105 SR_beta Signal recogni 99.5 9.8E-13 2.1E-17 105.8 14.2 114 41-167 2-122 (203)
176 KOG0395 Ras-related GTPase [Ge 99.5 2.4E-13 5.2E-18 108.4 10.2 147 38-196 2-150 (196)
177 COG5019 CDC3 Septin family pro 99.5 1.6E-12 3.5E-17 110.0 15.6 125 37-167 21-175 (373)
178 cd01889 SelB_euk SelB subfamil 99.5 9.3E-13 2E-17 104.9 13.2 113 40-167 1-133 (192)
179 cd04159 Arl10_like Arl10-like 99.5 9.6E-13 2.1E-17 100.4 12.8 113 42-167 2-114 (159)
180 cd01876 YihA_EngB The YihA (En 99.5 2.4E-12 5.1E-17 99.2 15.0 118 41-167 1-123 (170)
181 PF00350 Dynamin_N: Dynamin fa 99.5 3.9E-13 8.5E-18 104.6 10.5 113 42-164 1-168 (168)
182 KOG0093 GTPase Rab3, small G p 99.5 8.9E-13 1.9E-17 97.4 11.4 148 39-198 21-170 (193)
183 KOG2655 Septin family protein 99.5 2.4E-12 5.1E-17 109.7 15.6 142 12-167 2-171 (366)
184 KOG1707 Predicted Ras related/ 99.5 6.2E-13 1.3E-17 117.8 12.4 131 35-176 5-137 (625)
185 cd04129 Rho2 Rho2 subfamily. 99.5 1.1E-12 2.4E-17 104.0 12.5 114 40-167 2-118 (187)
186 COG2262 HflX GTPases [General 99.4 2.7E-12 5.8E-17 110.1 14.7 127 38-169 191-319 (411)
187 cd01884 EF_Tu EF-Tu subfamily. 99.4 1.6E-12 3.5E-17 103.8 12.5 115 39-167 2-131 (195)
188 cd01873 RhoBTB RhoBTB subfamil 99.4 8.1E-13 1.8E-17 105.6 10.7 116 39-168 2-134 (195)
189 cd01890 LepA LepA subfamily. 99.4 1.1E-12 2.3E-17 102.9 10.6 112 41-167 2-132 (179)
190 PRK09866 hypothetical protein; 99.4 1.5E-11 3.2E-16 111.5 18.3 73 87-167 230-302 (741)
191 PRK12317 elongation factor 1-a 99.4 2.3E-12 4.9E-17 114.9 13.0 118 37-167 4-152 (425)
192 PF00009 GTP_EFTU: Elongation 99.4 8.4E-12 1.8E-16 99.1 15.0 115 38-167 2-135 (188)
193 KOG0394 Ras-related GTPase [Ge 99.4 1.1E-12 2.5E-17 100.5 9.4 121 37-167 7-131 (210)
194 cd04168 TetM_like Tet(M)-like 99.4 7.4E-12 1.6E-16 103.0 15.0 112 41-167 1-129 (237)
195 TIGR00437 feoB ferrous iron tr 99.4 1.9E-12 4.2E-17 119.2 12.5 113 46-168 1-113 (591)
196 TIGR02528 EutP ethanolamine ut 99.4 1.2E-12 2.6E-17 98.9 9.2 100 41-167 2-101 (142)
197 PRK15467 ethanolamine utilizat 99.4 1.2E-12 2.6E-17 101.1 9.3 102 41-167 3-104 (158)
198 KOG0086 GTPase Rab4, small G p 99.4 2E-12 4.3E-17 96.2 9.7 126 40-177 10-137 (214)
199 COG1100 GTPase SAR1 and relate 99.4 6E-12 1.3E-16 102.0 13.2 119 39-169 5-126 (219)
200 smart00176 RAN Ran (Ras-relate 99.4 5.6E-12 1.2E-16 101.1 12.5 110 45-167 1-112 (200)
201 cd01886 EF-G Elongation factor 99.4 1.3E-11 2.8E-16 103.4 14.7 112 41-167 1-129 (270)
202 PF00025 Arf: ADP-ribosylation 99.4 8.9E-12 1.9E-16 97.9 12.6 125 28-167 4-128 (175)
203 CHL00071 tufA elongation facto 99.4 1.2E-11 2.7E-16 109.5 14.6 116 37-167 10-141 (409)
204 PF10662 PduV-EutP: Ethanolami 99.4 3.5E-12 7.5E-17 95.7 9.2 99 41-167 3-102 (143)
205 KOG0073 GTP-binding ADP-ribosy 99.4 2.7E-11 5.8E-16 91.3 13.5 126 27-167 5-130 (185)
206 cd04169 RF3 RF3 subfamily. Pe 99.4 2.9E-11 6.3E-16 101.1 14.9 113 40-167 3-136 (267)
207 smart00053 DYNc Dynamin, GTPas 99.3 8.3E-11 1.8E-15 96.4 16.2 124 38-169 25-207 (240)
208 KOG1489 Predicted GTP-binding 99.3 9.2E-12 2E-16 103.3 10.2 121 40-167 197-325 (366)
209 cd04170 EF-G_bact Elongation f 99.3 3.8E-11 8.2E-16 100.6 14.1 112 41-167 1-129 (268)
210 PRK05306 infB translation init 99.3 2.5E-11 5.5E-16 114.2 14.3 115 37-167 288-402 (787)
211 TIGR00487 IF-2 translation ini 99.3 2.8E-11 6.1E-16 111.1 14.3 115 37-167 85-200 (587)
212 KOG0088 GTPase Rab21, small G 99.3 1.2E-12 2.5E-17 98.0 4.2 125 38-174 12-138 (218)
213 cd00882 Ras_like_GTPase Ras-li 99.3 1.3E-11 2.9E-16 92.5 10.1 115 44-169 1-117 (157)
214 cd01888 eIF2_gamma eIF2-gamma 99.3 2.5E-11 5.5E-16 97.6 11.8 115 40-167 1-150 (203)
215 cd04167 Snu114p Snu114p subfam 99.3 8.9E-11 1.9E-15 95.1 15.0 112 41-167 2-136 (213)
216 PTZ00132 GTP-binding nuclear p 99.3 4.1E-11 8.8E-16 97.1 13.0 118 37-167 7-126 (215)
217 PRK12735 elongation factor Tu; 99.3 8.6E-11 1.9E-15 103.7 15.5 119 34-167 7-141 (396)
218 KOG0393 Ras-related small GTPa 99.3 4.7E-12 1E-16 99.6 6.2 116 38-167 3-122 (198)
219 KOG0091 GTPase Rab39, small G 99.3 1.5E-11 3.2E-16 92.6 8.2 149 38-197 7-159 (213)
220 TIGR02836 spore_IV_A stage IV 99.3 6.7E-11 1.4E-15 102.3 13.0 133 28-166 6-192 (492)
221 TIGR00483 EF-1_alpha translati 99.3 4.4E-11 9.5E-16 106.7 12.3 118 37-167 5-154 (426)
222 PLN03127 Elongation factor Tu; 99.3 1.8E-10 3.9E-15 102.9 16.1 117 36-167 58-190 (447)
223 cd01885 EF2 EF2 (for archaea a 99.3 1.8E-10 3.9E-15 93.7 14.8 112 41-167 2-138 (222)
224 cd01883 EF1_alpha Eukaryotic e 99.3 5.2E-11 1.1E-15 96.9 11.7 114 41-167 1-150 (219)
225 cd04165 GTPBP1_like GTPBP1-lik 99.3 1.3E-10 2.7E-15 94.9 13.9 113 41-167 1-151 (224)
226 PRK12736 elongation factor Tu; 99.3 1.1E-10 2.3E-15 103.1 14.4 117 36-167 9-141 (394)
227 TIGR00475 selB selenocysteine- 99.3 7.8E-11 1.7E-15 108.5 13.8 114 40-167 1-116 (581)
228 CHL00189 infB translation init 99.3 5.8E-11 1.3E-15 110.9 12.6 115 37-167 242-360 (742)
229 PLN03126 Elongation factor Tu; 99.3 2.1E-10 4.5E-15 103.1 15.8 118 36-167 78-210 (478)
230 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 9.1E-11 2E-15 95.6 11.9 121 41-167 1-124 (232)
231 TIGR00485 EF-Tu translation el 99.2 2.2E-10 4.7E-15 101.2 14.8 117 37-167 10-141 (394)
232 PRK05124 cysN sulfate adenylyl 99.2 1.2E-10 2.7E-15 104.8 12.7 118 36-167 24-173 (474)
233 PRK00049 elongation factor Tu; 99.2 3.4E-10 7.4E-15 99.9 15.3 117 36-167 9-141 (396)
234 COG1163 DRG Predicted GTPase [ 99.2 7.6E-11 1.7E-15 98.3 9.6 85 39-130 63-151 (365)
235 COG0536 Obg Predicted GTPase [ 99.2 2.7E-10 5.9E-15 95.7 12.8 120 41-167 161-288 (369)
236 KOG0097 GTPase Rab14, small G 99.2 1.2E-10 2.7E-15 85.6 9.4 129 39-180 11-142 (215)
237 PRK05506 bifunctional sulfate 99.2 8.9E-11 1.9E-15 109.5 10.8 117 37-167 22-170 (632)
238 TIGR00484 EF-G translation elo 99.2 4.6E-10 1E-14 105.7 15.6 114 39-167 10-140 (689)
239 TIGR01394 TypA_BipA GTP-bindin 99.2 5.5E-10 1.2E-14 102.9 15.4 112 41-167 3-129 (594)
240 PRK10218 GTP-binding protein; 99.2 6E-10 1.3E-14 102.7 15.5 114 39-167 5-133 (607)
241 cd01858 NGP_1 NGP-1. Autoanti 99.2 8.4E-11 1.8E-15 90.7 8.5 57 38-97 101-157 (157)
242 PRK12739 elongation factor G; 99.2 3.7E-10 8E-15 106.3 14.3 115 38-167 7-138 (691)
243 TIGR00491 aIF-2 translation in 99.2 2.6E-10 5.6E-15 104.7 12.9 114 38-167 3-134 (590)
244 PF09439 SRPRB: Signal recogni 99.2 2E-10 4.4E-15 89.8 10.1 136 39-189 3-145 (181)
245 cd01900 YchF YchF subfamily. 99.2 1.3E-10 2.8E-15 97.1 9.5 84 42-129 1-102 (274)
246 PRK09601 GTP-binding protein Y 99.2 2.2E-10 4.9E-15 98.8 11.1 86 40-129 3-106 (364)
247 cd04178 Nucleostemin_like Nucl 99.2 1.1E-10 2.4E-15 91.3 8.4 57 38-97 116-172 (172)
248 PTZ00258 GTP-binding protein; 99.2 2E-10 4.3E-15 100.2 10.8 86 37-129 19-125 (390)
249 KOG3859 Septins (P-loop GTPase 99.2 2.2E-10 4.8E-15 93.5 10.3 183 38-231 41-259 (406)
250 PRK00007 elongation factor G; 99.2 6.5E-10 1.4E-14 104.7 14.6 114 39-167 10-140 (693)
251 TIGR02034 CysN sulfate adenyly 99.2 1.5E-10 3.3E-15 102.5 9.8 114 40-167 1-146 (406)
252 TIGR00503 prfC peptide chain r 99.2 9.4E-10 2E-14 100.1 15.0 115 38-167 10-145 (527)
253 TIGR01393 lepA GTP-binding pro 99.2 3.9E-10 8.5E-15 104.0 12.3 113 40-167 4-135 (595)
254 PRK10512 selenocysteinyl-tRNA- 99.1 1.3E-09 2.9E-14 100.8 15.5 113 41-167 2-117 (614)
255 PRK00741 prfC peptide chain re 99.1 1.3E-09 2.7E-14 99.3 14.9 115 38-167 9-144 (526)
256 PRK13351 elongation factor G; 99.1 1.3E-09 2.8E-14 102.7 14.1 115 38-167 7-138 (687)
257 KOG0083 GTPase Rab26/Rab37, sm 99.1 2.7E-11 5.9E-16 88.2 2.1 121 43-175 1-124 (192)
258 cd01899 Ygr210 Ygr210 subfamil 99.1 3.6E-10 7.8E-15 96.6 9.3 82 42-130 1-110 (318)
259 cd01882 BMS1 Bms1. Bms1 is an 99.1 3.5E-09 7.5E-14 86.5 14.6 108 37-167 37-146 (225)
260 PTZ00141 elongation factor 1- 99.1 8.9E-10 1.9E-14 98.6 12.1 117 37-166 5-157 (446)
261 PRK09563 rbgA GTPase YlqF; Rev 99.1 5.2E-10 1.1E-14 94.6 9.6 66 38-106 120-185 (287)
262 PRK04004 translation initiatio 99.1 1.1E-09 2.4E-14 100.9 12.4 114 38-167 5-136 (586)
263 TIGR03680 eif2g_arch translati 99.1 1.6E-09 3.5E-14 96.0 12.4 118 37-167 2-147 (406)
264 TIGR03596 GTPase_YlqF ribosome 99.1 8.2E-10 1.8E-14 93.0 9.5 65 38-105 117-181 (276)
265 COG2229 Predicted GTPase [Gene 99.1 6.4E-09 1.4E-13 80.2 13.5 116 37-167 8-134 (187)
266 cd01849 YlqF_related_GTPase Yl 99.1 6E-10 1.3E-14 85.7 8.0 58 37-97 98-155 (155)
267 cd01855 YqeH YqeH. YqeH is an 99.1 2.8E-10 6E-15 90.5 5.8 70 25-97 113-190 (190)
268 PRK09602 translation-associate 99.1 1.3E-09 2.7E-14 95.9 10.4 85 39-130 1-113 (396)
269 KOG3883 Ras family small GTPas 99.0 5.2E-09 1.1E-13 78.2 11.9 125 37-174 7-138 (198)
270 PRK05433 GTP-binding protein L 99.0 2.9E-09 6.3E-14 98.4 12.4 114 39-167 7-139 (600)
271 PRK04000 translation initiatio 99.0 1.7E-09 3.6E-14 96.0 10.2 121 34-167 4-152 (411)
272 KOG0448 Mitofusin 1 GTPase, in 99.0 4.2E-09 9.2E-14 95.3 12.4 118 38-167 108-274 (749)
273 TIGR00490 aEF-2 translation el 99.0 6.7E-09 1.5E-13 98.2 14.3 115 38-167 18-151 (720)
274 PTZ00416 elongation factor 2; 99.0 5.7E-09 1.2E-13 100.0 13.9 115 38-167 18-157 (836)
275 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 1.3E-09 2.7E-14 82.6 7.3 56 40-98 84-139 (141)
276 KOG0070 GTP-binding ADP-ribosy 99.0 2.4E-09 5.2E-14 82.5 8.0 125 36-177 14-139 (181)
277 COG1161 Predicted GTPases [Gen 99.0 2.9E-09 6.3E-14 91.4 9.4 75 27-104 118-194 (322)
278 cd01856 YlqF YlqF. Proteins o 99.0 3.3E-09 7.2E-14 82.9 8.9 58 38-98 114-171 (171)
279 PLN00043 elongation factor 1-a 99.0 1E-08 2.3E-13 91.7 12.9 118 37-167 5-158 (447)
280 cd01859 MJ1464 MJ1464. This f 98.9 5.4E-09 1.2E-13 80.4 8.6 72 23-97 85-156 (156)
281 KOG0075 GTP-binding ADP-ribosy 98.9 1.5E-08 3.3E-13 75.2 10.2 116 38-167 19-135 (186)
282 cd01851 GBP Guanylate-binding 98.9 1E-07 2.2E-12 77.8 16.1 102 38-146 6-115 (224)
283 KOG0081 GTPase Rab27, small G 98.9 8.8E-10 1.9E-14 82.7 3.0 122 40-173 10-143 (219)
284 KOG0074 GTP-binding ADP-ribosy 98.9 2.6E-08 5.6E-13 73.5 10.5 126 27-167 5-132 (185)
285 KOG0071 GTP-binding ADP-ribosy 98.9 3.6E-08 7.9E-13 72.6 11.2 116 37-167 15-131 (180)
286 TIGR03597 GTPase_YqeH ribosome 98.9 1.4E-08 2.9E-13 88.7 9.5 89 39-130 154-248 (360)
287 PRK12740 elongation factor G; 98.8 5.8E-08 1.3E-12 91.4 13.9 108 45-167 1-125 (668)
288 PLN00116 translation elongatio 98.8 7.5E-08 1.6E-12 92.5 14.6 116 37-167 17-163 (843)
289 COG4917 EutP Ethanolamine util 98.8 1.6E-08 3.6E-13 73.1 7.5 101 41-167 3-103 (148)
290 PF03193 DUF258: Protein of un 98.8 3.6E-09 7.8E-14 81.2 4.3 61 40-103 36-103 (161)
291 COG5256 TEF1 Translation elong 98.8 2.2E-08 4.8E-13 86.3 9.4 120 37-168 5-159 (428)
292 KOG4252 GTP-binding protein [S 98.8 4.7E-09 1E-13 80.4 4.6 122 38-172 19-142 (246)
293 PRK07560 elongation factor EF- 98.8 9.2E-08 2E-12 90.8 14.3 115 38-167 19-152 (731)
294 PRK12289 GTPase RsgA; Reviewed 98.8 9.9E-09 2.2E-13 88.9 7.1 59 41-102 174-239 (352)
295 KOG0077 Vesicle coat complex C 98.8 3.7E-08 8E-13 74.6 9.0 116 37-167 18-134 (193)
296 KOG0410 Predicted GTP binding 98.8 3.4E-08 7.4E-13 82.6 9.6 127 37-167 176-307 (410)
297 KOG2486 Predicted GTPase [Gene 98.8 6.3E-08 1.4E-12 79.5 10.7 122 38-167 135-261 (320)
298 TIGR01425 SRP54_euk signal rec 98.8 1.4E-07 3E-12 83.4 13.3 119 38-167 99-252 (429)
299 PRK12288 GTPase RsgA; Reviewed 98.8 2.3E-08 5E-13 86.5 8.1 59 41-102 207-272 (347)
300 PRK09435 membrane ATPase/prote 98.8 3.1E-07 6.7E-12 78.9 14.6 35 26-60 43-77 (332)
301 TIGR00157 ribosome small subun 98.8 2.2E-08 4.7E-13 82.8 7.3 59 40-102 121-186 (245)
302 COG0012 Predicted GTPase, prob 98.7 7.5E-08 1.6E-12 82.4 9.0 84 39-129 2-107 (372)
303 PRK13768 GTPase; Provisional 98.7 9.8E-08 2.1E-12 79.3 9.4 81 87-169 97-177 (253)
304 TIGR03348 VI_IcmF type VI secr 98.7 1.5E-07 3.3E-12 93.4 12.3 123 42-167 114-256 (1169)
305 KOG1486 GTP-binding protein DR 98.7 3.4E-08 7.4E-13 79.9 6.1 103 38-150 61-167 (364)
306 PRK13796 GTPase YqeH; Provisio 98.7 4.6E-08 9.9E-13 85.5 7.4 59 39-100 160-223 (365)
307 COG2895 CysN GTPases - Sulfate 98.7 1.4E-07 3.1E-12 79.8 9.4 128 37-178 4-163 (431)
308 PTZ00327 eukaryotic translatio 98.6 3.8E-07 8.1E-12 81.8 11.8 118 37-167 32-184 (460)
309 TIGR00092 GTP-binding protein 98.6 2.6E-07 5.6E-12 80.0 10.3 84 40-129 3-107 (368)
310 PTZ00099 rab6; Provisional 98.6 5.1E-07 1.1E-11 70.9 10.9 78 87-175 29-106 (176)
311 PRK11889 flhF flagellar biosyn 98.6 2.3E-07 4.9E-12 80.7 9.2 119 38-167 240-390 (436)
312 PF00448 SRP54: SRP54-type pro 98.6 5.4E-08 1.2E-12 77.7 4.9 71 86-167 83-153 (196)
313 PRK00098 GTPase RsgA; Reviewed 98.6 1.7E-07 3.8E-12 79.7 8.2 58 40-100 165-229 (298)
314 COG1162 Predicted GTPases [Gen 98.6 9.4E-08 2E-12 80.0 6.3 59 41-102 166-231 (301)
315 KOG1954 Endocytosis/signaling 98.6 5.9E-07 1.3E-11 76.6 10.6 118 40-167 59-224 (532)
316 cd01854 YjeQ_engC YjeQ/EngC. 98.6 2.3E-07 5E-12 78.5 8.1 59 40-101 162-227 (287)
317 COG0532 InfB Translation initi 98.6 1.6E-06 3.4E-11 77.3 13.4 114 38-167 4-120 (509)
318 KOG1424 Predicted GTP-binding 98.6 1.1E-07 2.3E-12 84.0 5.7 62 39-103 314-375 (562)
319 PF03029 ATP_bind_1: Conserved 98.5 6.4E-08 1.4E-12 79.6 3.9 78 88-168 92-170 (238)
320 KOG1532 GTPase XAB1, interacts 98.5 7.3E-07 1.6E-11 73.2 9.6 75 87-168 116-195 (366)
321 KOG1145 Mitochondrial translat 98.5 2.5E-06 5.5E-11 76.1 13.4 115 37-167 151-266 (683)
322 KOG3886 GTP-binding protein [S 98.5 3.8E-07 8.2E-12 73.0 7.5 118 39-169 4-131 (295)
323 COG1419 FlhF Flagellar GTP-bin 98.5 3E-07 6.5E-12 79.8 7.2 119 38-167 202-351 (407)
324 KOG0090 Signal recognition par 98.5 1.7E-06 3.7E-11 68.5 10.5 117 38-167 37-158 (238)
325 KOG1491 Predicted GTP-binding 98.5 4.2E-07 9E-12 76.6 7.5 88 35-129 16-124 (391)
326 KOG2485 Conserved ATP/GTP bind 98.4 8.4E-07 1.8E-11 74.1 8.1 70 37-106 141-215 (335)
327 TIGR00064 ftsY signal recognit 98.4 1.1E-05 2.4E-10 67.7 14.4 72 85-167 153-230 (272)
328 PRK12726 flagellar biosynthesi 98.4 4.2E-06 9.1E-11 72.7 11.5 119 38-167 205-355 (407)
329 KOG0447 Dynamin-like GTP bindi 98.4 4.6E-06 1E-10 74.4 11.9 124 40-169 309-494 (980)
330 COG0480 FusA Translation elong 98.4 3.6E-06 7.7E-11 78.8 11.9 115 38-167 9-141 (697)
331 KOG0462 Elongation factor-type 98.4 1.6E-06 3.4E-11 77.3 8.9 115 40-169 61-192 (650)
332 PRK14722 flhF flagellar biosyn 98.4 1.8E-06 3.8E-11 75.3 8.9 125 38-167 136-294 (374)
333 TIGR00750 lao LAO/AO transport 98.4 6.5E-06 1.4E-10 70.2 12.0 36 26-61 21-56 (300)
334 COG1217 TypA Predicted membran 98.3 3.2E-06 7E-11 74.1 9.7 114 40-168 6-134 (603)
335 PRK14974 cell division protein 98.3 8.7E-07 1.9E-11 76.3 6.2 71 86-167 222-292 (336)
336 COG3523 IcmF Type VI protein s 98.3 2.5E-06 5.4E-11 83.2 9.6 135 42-183 128-281 (1188)
337 PRK10416 signal recognition pa 98.3 1.8E-05 3.8E-10 67.9 13.2 119 38-167 113-272 (318)
338 KOG0458 Elongation factor 1 al 98.3 6.6E-06 1.4E-10 73.9 10.8 139 37-191 175-348 (603)
339 PRK14721 flhF flagellar biosyn 98.3 2.3E-06 4.9E-11 75.7 7.0 119 38-167 190-339 (420)
340 PF03308 ArgK: ArgK protein; 98.2 7.9E-06 1.7E-10 67.1 9.3 35 26-60 16-50 (266)
341 KOG0076 GTP-binding ADP-ribosy 98.2 3.8E-06 8.3E-11 64.3 6.8 118 38-167 16-139 (197)
342 PRK14723 flhF flagellar biosyn 98.2 5.7E-06 1.2E-10 77.8 8.6 121 39-167 185-336 (767)
343 PRK00771 signal recognition pa 98.2 2.7E-06 5.9E-11 75.7 5.9 119 38-167 94-245 (437)
344 PRK14845 translation initiatio 98.2 3.1E-05 6.7E-10 75.4 13.5 103 50-168 472-592 (1049)
345 COG4108 PrfC Peptide chain rel 98.2 2.3E-05 4.9E-10 68.4 10.7 115 38-167 11-146 (528)
346 COG0050 TufB GTPases - transla 98.1 4.5E-05 9.8E-10 63.5 11.5 138 34-191 7-160 (394)
347 PRK12727 flagellar biosynthesi 98.1 4.1E-05 8.9E-10 69.3 12.1 24 38-61 349-372 (559)
348 PRK06731 flhF flagellar biosyn 98.1 1.6E-05 3.4E-10 66.5 8.8 118 39-167 75-224 (270)
349 PRK05703 flhF flagellar biosyn 98.1 1.4E-05 3.1E-10 71.2 8.3 71 86-167 299-370 (424)
350 KOG2423 Nucleolar GTPase [Gene 98.1 6.7E-06 1.4E-10 70.8 5.9 76 23-101 289-366 (572)
351 KOG0096 GTPase Ran/TC4/GSP1 (n 98.1 1.5E-05 3.2E-10 62.0 7.2 117 38-167 9-127 (216)
352 PRK12723 flagellar biosynthesi 98.1 6.7E-05 1.5E-09 65.9 11.8 119 38-167 173-325 (388)
353 smart00275 G_alpha G protein a 98.0 5.2E-05 1.1E-09 65.8 10.8 77 82-167 179-264 (342)
354 cd03115 SRP The signal recogni 98.0 0.00026 5.7E-09 55.2 13.6 71 86-167 82-152 (173)
355 PRK12724 flagellar biosynthesi 98.0 5E-06 1.1E-10 73.2 4.2 118 39-167 223-372 (432)
356 cd00066 G-alpha G protein alph 98.0 4E-05 8.6E-10 65.8 9.6 77 82-167 156-241 (317)
357 PRK10867 signal recognition pa 98.0 0.00013 2.9E-09 65.0 13.1 70 86-166 183-252 (433)
358 COG1703 ArgK Putative periplas 98.0 4.7E-05 1E-09 63.6 9.5 35 26-60 38-72 (323)
359 KOG2484 GTPase [General functi 98.0 6.8E-06 1.5E-10 70.8 4.5 74 25-101 236-311 (435)
360 COG0541 Ffh Signal recognition 98.0 2.2E-05 4.7E-10 68.7 7.2 142 14-166 71-251 (451)
361 cd03112 CobW_like The function 97.9 3.2E-05 6.9E-10 59.6 7.0 21 42-62 3-23 (158)
362 KOG1673 Ras GTPases [General f 97.9 7.9E-05 1.7E-09 56.2 8.6 139 38-189 19-159 (205)
363 TIGR00959 ffh signal recogniti 97.9 1.9E-05 4.1E-10 70.3 5.7 70 86-166 182-251 (428)
364 COG5257 GCD11 Translation init 97.9 0.00019 4.1E-09 60.6 10.7 135 37-191 8-171 (415)
365 COG0481 LepA Membrane GTPase L 97.9 6.7E-05 1.5E-09 66.2 8.0 114 41-169 11-143 (603)
366 COG5192 BMS1 GTP-binding prote 97.8 0.00021 4.5E-09 64.4 10.4 111 35-167 65-176 (1077)
367 KOG1487 GTP-binding protein DR 97.8 2.8E-05 6E-10 63.6 4.5 116 40-165 60-180 (358)
368 KOG0072 GTP-binding ADP-ribosy 97.8 9.7E-05 2.1E-09 55.0 7.0 124 28-167 8-132 (182)
369 KOG0781 Signal recognition par 97.8 0.0001 2.2E-09 65.1 7.8 77 85-167 465-543 (587)
370 KOG0468 U5 snRNP-specific prot 97.8 0.00026 5.6E-09 64.9 10.5 115 38-167 127-262 (971)
371 PRK01889 GTPase RsgA; Reviewed 97.8 3.2E-05 7E-10 67.4 4.7 26 40-65 196-221 (356)
372 KOG0461 Selenocysteine-specifi 97.8 0.00056 1.2E-08 58.3 11.7 114 38-169 6-137 (522)
373 PRK06995 flhF flagellar biosyn 97.8 6E-05 1.3E-09 67.8 6.4 24 39-62 256-279 (484)
374 COG3276 SelB Selenocysteine-sp 97.7 0.00042 9.2E-09 60.7 11.3 113 41-167 2-116 (447)
375 KOG0082 G-protein alpha subuni 97.7 0.00054 1.2E-08 59.0 11.6 78 81-167 189-275 (354)
376 KOG0780 Signal recognition par 97.6 0.00018 3.8E-09 62.1 6.9 90 37-129 99-223 (483)
377 cd03114 ArgK-like The function 97.6 0.0013 2.9E-08 50.1 11.1 20 42-61 2-21 (148)
378 COG0552 FtsY Signal recognitio 97.6 0.00012 2.7E-09 62.1 5.5 120 37-167 137-297 (340)
379 KOG3887 Predicted small GTPase 97.5 0.00035 7.6E-09 56.7 7.0 120 40-167 28-148 (347)
380 smart00010 small_GTPase Small 97.5 0.00061 1.3E-08 49.4 7.4 24 40-63 1-24 (124)
381 KOG1144 Translation initiation 97.4 0.0011 2.4E-08 61.6 9.9 113 38-166 474-604 (1064)
382 cd02038 FleN-like FleN is a me 97.4 0.0095 2.1E-07 44.7 13.0 100 43-166 4-109 (139)
383 PF00004 AAA: ATPase family as 97.4 0.0014 3.1E-08 48.1 8.2 101 42-165 1-111 (132)
384 PF06858 NOG1: Nucleolar GTP-b 97.3 0.00065 1.4E-08 42.6 5.0 45 118-165 12-58 (58)
385 KOG1707 Predicted Ras related/ 97.3 0.0033 7.2E-08 57.0 11.0 114 38-167 424-539 (625)
386 cd03222 ABC_RNaseL_inhibitor T 97.3 0.013 2.7E-07 46.1 12.8 25 39-63 25-49 (177)
387 KOG2749 mRNA cleavage and poly 97.2 0.0021 4.6E-08 55.0 8.7 26 37-62 101-126 (415)
388 PF05673 DUF815: Protein of un 97.2 0.0048 1E-07 50.6 10.3 29 35-63 48-76 (249)
389 KOG4423 GTP-binding protein-li 97.1 8.1E-06 1.7E-10 63.3 -6.2 118 40-167 26-148 (229)
390 cd03111 CpaE_like This protein 97.1 0.014 2.9E-07 41.7 10.7 94 45-163 6-106 (106)
391 COG0194 Gmk Guanylate kinase [ 97.1 0.0004 8.7E-09 54.3 2.5 52 39-93 4-55 (191)
392 cd02042 ParA ParA and ParB of 97.0 0.01 2.2E-07 41.9 9.7 71 42-131 2-73 (104)
393 KOG1143 Predicted translation 97.0 0.0025 5.4E-08 55.0 7.3 134 38-191 166-334 (591)
394 cd02036 MinD Bacterial cell di 97.0 0.018 3.9E-07 44.7 11.6 64 88-167 64-127 (179)
395 PF13555 AAA_29: P-loop contai 97.0 0.00072 1.6E-08 43.3 3.0 20 41-60 25-44 (62)
396 cd01983 Fer4_NifH The Fer4_Nif 97.0 0.017 3.7E-07 39.5 10.4 69 42-131 2-70 (99)
397 KOG1533 Predicted GTPase [Gene 97.0 0.0012 2.5E-08 53.5 4.7 21 40-60 3-23 (290)
398 PRK14737 gmk guanylate kinase; 97.0 0.001 2.2E-08 52.6 4.5 26 38-63 3-28 (186)
399 PRK13900 type IV secretion sys 97.0 0.0053 1.2E-07 53.1 9.2 25 38-62 159-183 (332)
400 KOG1534 Putative transcription 97.0 0.0017 3.7E-08 51.8 5.3 21 40-60 4-24 (273)
401 COG1341 Predicted GTPase or GT 96.9 0.0031 6.7E-08 55.0 7.3 27 36-62 70-96 (398)
402 COG5258 GTPBP1 GTPase [General 96.9 0.012 2.6E-07 51.1 10.6 119 37-168 115-269 (527)
403 TIGR03263 guanyl_kin guanylate 96.9 0.00064 1.4E-08 53.2 2.7 23 41-63 3-25 (180)
404 cd00009 AAA The AAA+ (ATPases 96.9 0.013 2.9E-07 43.1 9.8 26 38-63 18-43 (151)
405 KOG0459 Polypeptide release fa 96.9 0.0018 3.9E-08 56.3 5.4 140 37-190 77-251 (501)
406 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.024 5.3E-07 42.8 11.2 25 39-63 26-50 (144)
407 PF00005 ABC_tran: ABC transpo 96.9 0.00084 1.8E-08 50.0 3.1 25 40-64 12-36 (137)
408 COG1618 Predicted nucleotide k 96.9 0.014 3E-07 44.8 9.5 23 38-60 4-26 (179)
409 cd00071 GMPK Guanosine monopho 96.9 0.0013 2.9E-08 49.3 4.1 21 42-62 2-22 (137)
410 COG1116 TauB ABC-type nitrate/ 96.9 0.00089 1.9E-08 54.8 3.0 24 41-64 31-54 (248)
411 KOG0446 Vacuolar sorting prote 96.8 0.0013 2.7E-08 61.7 4.3 27 38-64 28-54 (657)
412 PRK14738 gmk guanylate kinase; 96.8 0.0016 3.4E-08 52.4 4.3 25 38-62 12-36 (206)
413 cd03230 ABC_DR_subfamily_A Thi 96.8 0.022 4.7E-07 44.3 10.6 25 39-63 26-50 (173)
414 COG3840 ThiQ ABC-type thiamine 96.8 0.0012 2.5E-08 51.7 2.9 25 40-64 26-50 (231)
415 PRK08472 fliI flagellum-specif 96.8 0.0011 2.4E-08 59.0 3.2 90 38-130 156-256 (434)
416 PF13207 AAA_17: AAA domain; P 96.8 0.0013 2.8E-08 47.8 3.0 22 41-62 1-22 (121)
417 PF09547 Spore_IV_A: Stage IV 96.7 0.029 6.3E-07 49.5 11.4 36 27-62 5-40 (492)
418 PRK09270 nucleoside triphospha 96.7 0.0033 7.2E-08 51.4 5.5 34 30-63 24-57 (229)
419 PRK00300 gmk guanylate kinase; 96.7 0.0022 4.8E-08 51.3 4.1 26 38-63 4-29 (205)
420 PF04665 Pox_A32: Poxvirus A32 96.7 0.0017 3.6E-08 53.4 3.3 26 37-62 11-36 (241)
421 COG1136 SalX ABC-type antimicr 96.7 0.0015 3.3E-08 53.0 3.0 24 41-64 33-56 (226)
422 COG4962 CpaF Flp pilus assembl 96.7 0.0032 7E-08 53.9 5.1 26 38-63 172-197 (355)
423 KOG0460 Mitochondrial translat 96.6 0.023 4.9E-07 48.7 10.0 137 35-191 50-202 (449)
424 PRK13851 type IV secretion sys 96.6 0.003 6.6E-08 54.8 5.0 26 38-63 161-186 (344)
425 cd01130 VirB11-like_ATPase Typ 96.6 0.0024 5.1E-08 50.5 4.0 25 39-63 25-49 (186)
426 KOG0467 Translation elongation 96.6 0.0071 1.5E-07 56.5 7.5 114 38-166 8-136 (887)
427 PRK07261 topology modulation p 96.6 0.0017 3.8E-08 50.6 3.1 22 41-62 2-23 (171)
428 PF02263 GBP: Guanylate-bindin 96.5 0.0079 1.7E-07 50.2 6.7 63 38-100 20-87 (260)
429 PRK08118 topology modulation p 96.5 0.0023 5E-08 49.7 3.2 23 40-62 2-24 (167)
430 cd03225 ABC_cobalt_CbiO_domain 96.5 0.0023 5.1E-08 51.4 3.3 25 39-63 27-51 (211)
431 KOG0464 Elongation factor G [T 96.5 0.0012 2.6E-08 57.6 1.5 113 40-167 38-167 (753)
432 COG3839 MalK ABC-type sugar tr 96.5 0.0021 4.7E-08 55.3 3.0 24 41-64 31-54 (338)
433 cd03238 ABC_UvrA The excision 96.5 0.0024 5.2E-08 50.1 3.1 24 38-61 20-43 (176)
434 cd03261 ABC_Org_Solvent_Resist 96.5 0.0025 5.4E-08 52.2 3.3 25 39-63 26-50 (235)
435 COG0563 Adk Adenylate kinase a 96.4 0.0026 5.7E-08 50.0 3.1 23 40-62 1-23 (178)
436 TIGR02673 FtsE cell division A 96.4 0.0027 5.9E-08 51.1 3.3 25 39-63 28-52 (214)
437 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.4 0.0028 6E-08 51.2 3.3 25 39-63 30-54 (218)
438 TIGR00960 3a0501s02 Type II (G 96.4 0.0028 6.1E-08 51.2 3.3 25 39-63 29-53 (216)
439 PRK10078 ribose 1,5-bisphospho 96.4 0.0029 6.2E-08 50.0 3.2 23 41-63 4-26 (186)
440 PRK05480 uridine/cytidine kina 96.4 0.003 6.4E-08 50.8 3.4 25 38-62 5-29 (209)
441 cd03265 ABC_DrrA DrrA is the A 96.4 0.0029 6.3E-08 51.2 3.3 25 39-63 26-50 (220)
442 TIGR01166 cbiO cobalt transpor 96.4 0.003 6.5E-08 50.0 3.3 24 40-63 19-42 (190)
443 COG0523 Putative GTPases (G3E 96.4 0.029 6.3E-07 48.3 9.5 119 42-169 4-160 (323)
444 cd03293 ABC_NrtD_SsuB_transpor 96.4 0.003 6.5E-08 51.2 3.3 24 40-63 31-54 (220)
445 TIGR03608 L_ocin_972_ABC putat 96.4 0.003 6.6E-08 50.5 3.3 24 40-63 25-48 (206)
446 cd03226 ABC_cobalt_CbiO_domain 96.4 0.0031 6.8E-08 50.5 3.2 25 39-63 26-50 (205)
447 PF13671 AAA_33: AAA domain; P 96.4 0.0028 6.2E-08 47.4 2.8 21 42-62 2-22 (143)
448 cd03264 ABC_drug_resistance_li 96.4 0.0029 6.2E-08 50.9 3.0 23 41-63 27-49 (211)
449 cd03259 ABC_Carb_Solutes_like 96.4 0.0032 7E-08 50.7 3.3 25 39-63 26-50 (213)
450 KOG1970 Checkpoint RAD17-RFC c 96.4 0.073 1.6E-06 48.4 11.9 46 120-166 194-239 (634)
451 COG1121 ZnuC ABC-type Mn/Zn tr 96.3 0.003 6.6E-08 52.1 3.0 23 40-62 31-53 (254)
452 cd03292 ABC_FtsE_transporter F 96.3 0.0033 7.3E-08 50.6 3.3 25 39-63 27-51 (214)
453 cd00820 PEPCK_HprK Phosphoenol 96.3 0.0033 7.1E-08 45.0 2.8 21 40-60 16-36 (107)
454 cd03260 ABC_PstB_phosphate_tra 96.3 0.0033 7.1E-08 51.2 3.2 25 39-63 26-50 (227)
455 TIGR02322 phosphon_PhnN phosph 96.3 0.003 6.4E-08 49.4 2.7 22 41-62 3-24 (179)
456 cd03269 ABC_putative_ATPase Th 96.3 0.0036 7.8E-08 50.3 3.3 25 39-63 26-50 (210)
457 COG4525 TauB ABC-type taurine 96.3 0.0032 6.9E-08 49.9 2.8 25 39-63 31-55 (259)
458 PF05621 TniB: Bacterial TniB 96.3 0.086 1.9E-06 44.7 11.5 113 37-164 59-190 (302)
459 TIGR02782 TrbB_P P-type conjug 96.3 0.014 3E-07 49.8 6.9 25 38-62 131-155 (299)
460 TIGR02315 ABC_phnC phosphonate 96.3 0.0036 7.7E-08 51.5 3.3 25 39-63 28-52 (243)
461 cd03216 ABC_Carb_Monos_I This 96.3 0.004 8.7E-08 48.1 3.3 25 39-63 26-50 (163)
462 cd03229 ABC_Class3 This class 96.3 0.0039 8.5E-08 48.8 3.3 25 39-63 26-50 (178)
463 PRK15177 Vi polysaccharide exp 96.3 0.0037 8E-08 50.5 3.2 25 39-63 13-37 (213)
464 cd03258 ABC_MetN_methionine_tr 96.3 0.0037 8E-08 51.1 3.3 25 39-63 31-55 (233)
465 TIGR02211 LolD_lipo_ex lipopro 96.3 0.0038 8.1E-08 50.6 3.3 25 39-63 31-55 (221)
466 TIGR00101 ureG urease accessor 96.3 0.0036 7.8E-08 50.1 3.1 24 39-62 1-24 (199)
467 TIGR00235 udk uridine kinase. 96.3 0.0039 8.4E-08 50.1 3.3 25 38-62 5-29 (207)
468 cd03224 ABC_TM1139_LivF_branch 96.3 0.0037 8.1E-08 50.6 3.2 25 39-63 26-50 (222)
469 cd03262 ABC_HisP_GlnQ_permease 96.3 0.0038 8.3E-08 50.2 3.3 25 39-63 26-50 (213)
470 cd03218 ABC_YhbG The ABC trans 96.3 0.0038 8.3E-08 50.9 3.3 25 39-63 26-50 (232)
471 cd03263 ABC_subfamily_A The AB 96.3 0.0039 8.5E-08 50.4 3.3 24 40-63 29-52 (220)
472 cd01131 PilT Pilus retraction 96.3 0.0032 7E-08 50.3 2.7 23 41-63 3-25 (198)
473 PRK06217 hypothetical protein; 96.3 0.0038 8.2E-08 49.1 3.1 23 40-62 2-24 (183)
474 cd03266 ABC_NatA_sodium_export 96.3 0.004 8.7E-08 50.3 3.3 25 39-63 31-55 (218)
475 cd03235 ABC_Metallic_Cations A 96.3 0.0038 8.3E-08 50.2 3.2 25 39-63 25-49 (213)
476 PRK11248 tauB taurine transpor 96.3 0.0039 8.5E-08 51.8 3.3 25 39-63 27-51 (255)
477 PRK11629 lolD lipoprotein tran 96.3 0.004 8.6E-08 50.9 3.3 24 40-63 36-59 (233)
478 cd02019 NK Nucleoside/nucleoti 96.2 0.0045 9.8E-08 40.5 2.9 21 42-62 2-22 (69)
479 TIGR01189 ccmA heme ABC export 96.2 0.0042 9.2E-08 49.5 3.3 25 39-63 26-50 (198)
480 PF13521 AAA_28: AAA domain; P 96.2 0.0032 6.9E-08 48.5 2.5 22 41-62 1-22 (163)
481 PRK13541 cytochrome c biogenes 96.2 0.0042 9.1E-08 49.4 3.3 25 39-63 26-50 (195)
482 cd03256 ABC_PhnC_transporter A 96.2 0.0041 8.9E-08 51.0 3.3 25 39-63 27-51 (241)
483 PRK10751 molybdopterin-guanine 96.2 0.021 4.5E-07 44.6 6.9 24 39-62 6-29 (173)
484 COG4988 CydD ABC-type transpor 96.2 0.0039 8.4E-08 56.7 3.2 25 40-64 348-372 (559)
485 PRK13539 cytochrome c biogenes 96.2 0.0044 9.5E-08 49.8 3.3 26 38-63 27-52 (207)
486 cd03257 ABC_NikE_OppD_transpor 96.2 0.0043 9.3E-08 50.4 3.2 26 38-63 30-55 (228)
487 cd03268 ABC_BcrA_bacitracin_re 96.2 0.0044 9.6E-08 49.7 3.3 25 39-63 26-50 (208)
488 cd03231 ABC_CcmA_heme_exporter 96.2 0.0045 9.8E-08 49.5 3.3 26 38-63 25-50 (201)
489 TIGR01978 sufC FeS assembly AT 96.2 0.0043 9.3E-08 51.0 3.3 24 39-62 26-49 (243)
490 PRK13540 cytochrome c biogenes 96.2 0.0046 1E-07 49.3 3.3 26 38-63 26-51 (200)
491 cd03301 ABC_MalK_N The N-termi 96.2 0.0046 1E-07 49.7 3.3 25 39-63 26-50 (213)
492 cd03219 ABC_Mj1267_LivG_branch 96.2 0.0043 9.4E-08 50.7 3.2 25 39-63 26-50 (236)
493 cd03223 ABCD_peroxisomal_ALDP 96.2 0.0048 1E-07 47.8 3.3 26 38-63 26-51 (166)
494 cd03214 ABC_Iron-Siderophores_ 96.2 0.0048 1E-07 48.4 3.3 26 38-63 24-49 (180)
495 PF13191 AAA_16: AAA ATPase do 96.2 0.0078 1.7E-07 46.9 4.5 28 35-62 20-47 (185)
496 PRK13543 cytochrome c biogenes 96.2 0.0046 9.9E-08 49.9 3.2 25 39-63 37-61 (214)
497 TIGR03864 PQQ_ABC_ATP ABC tran 96.2 0.0047 1E-07 50.6 3.3 25 39-63 27-51 (236)
498 PRK14242 phosphate transporter 96.2 0.0044 9.5E-08 51.3 3.2 24 39-62 32-55 (253)
499 cd03215 ABC_Carb_Monos_II This 96.2 0.0048 1E-07 48.5 3.2 25 39-63 26-50 (182)
500 smart00382 AAA ATPases associa 96.2 0.0055 1.2E-07 44.7 3.4 25 39-63 2-26 (148)
No 1
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=100.00 E-value=5.2e-43 Score=292.26 Aligned_cols=234 Identities=71% Similarity=1.067 Sum_probs=208.1
Q ss_pred cccc-chhhhcccccCChhhHHHHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEE
Q 026113 3 MASQ-VIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS 81 (243)
Q Consensus 3 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~ 81 (243)
||++ ..++|.|+.++|.++++.|.+++.++.+++.+.++|+++|.+|+||||++|+|+|..++.++.+.+.+..+....
T Consensus 1 ~~~~~~~~~w~g~~~~~~~tq~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~ 80 (313)
T TIGR00991 1 MASPQTPREWVGIQQFPPATQTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS 80 (313)
T ss_pred CCCcccCcceeccccCCHHHHHHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE
Confidence 4444 899999999999999999999999999988899999999999999999999999999877777666655555555
Q ss_pred eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEE
Q 026113 82 RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 161 (243)
Q Consensus 82 ~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~ 161 (243)
...+|..+.||||||+.+....+++..+.++.++...++|+||||.++|..++++.+...++.+.+.||+.+|+++|+|+
T Consensus 81 ~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVf 160 (313)
T TIGR00991 81 RTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVL 160 (313)
T ss_pred EEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEE
Confidence 66789999999999999876666666666777776679999999999987788889999999999999999999999999
Q ss_pred eCCCCCCCCCCCHHHHHHhhhHHHHHHHccccCCccccccCCCccchhhhcCCCCCCCcCccccccCCCCCccceec
Q 026113 162 THAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNRIQCCFP 238 (243)
Q Consensus 162 tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~lp~~~~w~~~~ 238 (243)
||+|..++++.++++|+.+..+.++++|+.+.+..+...+...+|..++||++.|.+|+..+++ ||++..|+..|
T Consensus 161 Th~d~~~pd~~~~e~fv~~~~~~lq~~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~v--lp~g~~w~~~l 235 (313)
T TIGR00991 161 THAQFSPPDGLEYNDFFSKRSEALLRVIHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKI--LPDGTPWIPKL 235 (313)
T ss_pred ECCccCCCCCCCHHHHHHhcHHHHHHHHHHHhcccccccccccCCEEEEecCCcccCCCCCCeE--CCCCCccHHHH
Confidence 9999988888999999999999999999998887766666677899999999999999999999 99999998765
No 2
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=100.00 E-value=5.3e-36 Score=246.86 Aligned_cols=226 Identities=50% Similarity=0.668 Sum_probs=185.3
Q ss_pred hhcccccCChhhHHHHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEE
Q 026113 10 EWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTL 89 (243)
Q Consensus 10 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 89 (243)
+|.|....+...+..+.++..+..+....+++|+|+|++|+|||||+|+|+|...+.++...+.|.....+...+++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i 81 (249)
T cd01853 2 EWTGFQFFPDAAQTKALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKL 81 (249)
T ss_pred CccccccCcHHHHHHHHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEE
Confidence 67888999999999999999998888889999999999999999999999999877777777777777777777889999
Q ss_pred EEEeCCCCCCCCC---CcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113 90 NIVDTPGLIEGGY---VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (243)
Q Consensus 90 ~viDTPG~~~~~~---~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 166 (243)
.||||||+.+... .++.....+.+++...++|++|||.++|..++...+..+++.+.+.||.++|.++++|+||+|.
T Consensus 82 ~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~ 161 (249)
T cd01853 82 NIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAAS 161 (249)
T ss_pred EEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCcc
Confidence 9999999987732 3345566677777667899999999999878888899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHhhhHH-HHHHHccccCCccccccCCCccchhhhcCCCCCCCcCccccccCCCCCccceec
Q 026113 167 SLPDRLDYEVFCSKRSEA-LLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNRIQCCFP 238 (243)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~-l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~lp~~~~w~~~~ 238 (243)
.+++......+..+.... .+.++..+.++... .....+|+.+++|.+.|-+|+..+++ ||++..|+..|
T Consensus 162 ~~p~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~pv~lven~~~c~~n~~~~~v--lp~g~~w~~~~ 231 (249)
T cd01853 162 SPPDGLNGTPFSYDRFVAQRSHIVQQAIQQAAG-DPRLENPVSLVENHPRCRKNREGEKV--LPNGTVWKPQL 231 (249)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHHhhhhcc-CccccCCEEEEeCCCcccCCCCCCeE--CCCCCccHHHH
Confidence 877776555444443333 33344444444432 22356899999999999999999999 99999998765
No 3
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=100.00 E-value=5.6e-33 Score=248.64 Aligned_cols=198 Identities=35% Similarity=0.559 Sum_probs=163.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRF 114 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~---~~~~~~~~~~ 114 (243)
.+++|+|+|++|+||||++|+|+|...+.+....+.|..+........|..+.||||||+.++.... .+..+.+.++
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 3479999999999999999999999877776655555555555556788999999999999875332 3455566666
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCC-----CCHHHHHHhhhHHHHHHH
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR-----LDYEVFCSKRSEALLKFV 189 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~-----~~~~~~~~~~~~~l~~~i 189 (243)
+...++|+||||++++..+....+..+++.+.+.||..+|+++|||+|++|..+++. .++++|+.++.+.++++|
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~rs~~Lq~~I 276 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQRSHIVQQAI 276 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhhChHHHHHHH
Confidence 666789999999998755555578899999999999999999999999999886543 689999999889999999
Q ss_pred ccccC-CccccccCCCccchhhhcCCCCCCCcCccccccCCCCCccceec
Q 026113 190 SPSTW-MKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNRIQCCFP 238 (243)
Q Consensus 190 ~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~lp~~~~w~~~~ 238 (243)
+.|.+ ++.+. +...+|..++||++.|.+|+..+++ ||++..|+..|
T Consensus 277 rq~~g~~~l~n-~~~~~Pv~lvEN~~~C~~N~~gekV--LPnG~~W~p~l 323 (763)
T TIGR00993 277 GQAVGDLRLMN-PNLMNPVSLVENHPACRKNRAGQKV--LPNGQVWKPHL 323 (763)
T ss_pred HHhcCcceecc-cCCCCCEEEEecCCcccCCCCCcee--CCCCchhHHHH
Confidence 99765 44443 5568999999999999999999999 99999997654
No 4
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.98 E-value=8.8e-32 Score=217.85 Aligned_cols=182 Identities=30% Similarity=0.392 Sum_probs=143.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccc-CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH--h
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVS-TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--L 116 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~--~ 116 (243)
++|+|+|.+|+||||++|+|+|...+... ...+.|..+......++|+.+.||||||+.|+...+++..+.+.+++ +
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 68999999999999999999999987655 33456777888888999999999999999998887777888888765 4
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHhh-hHHHHHHHccc-cC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKR-SEALLKFVSPS-TW 194 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~-~~~l~~~i~~~-~~ 194 (243)
.+++|+||||++++ ++++.+...++.+.+.||.++|+++|||+|++|...+ ..++++++.. ++.+++++++| +|
T Consensus 81 ~~g~ha~llVi~~~--r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG--RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp TT-ESEEEEEEETT--B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCeEEEEEEecC--cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCE
Confidence 68999999998888 8999999999999999999999999999999987633 3489999853 57899999975 56
Q ss_pred Cccccc----------cC----CCccchhhhcCCCCCCCcCcccc
Q 026113 195 MKKKDI----------QG----SFVPVVLVENSGRCAKNENDEKV 225 (243)
Q Consensus 195 ~~~~~~----------~~----~~i~~~~~~~~~~~~~~~~~~~~ 225 (243)
|+.+.. |. .+|+.++.+|++.||++++++++
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~ 201 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEA 201 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHH
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHH
Confidence 654321 11 58999999999999999988776
No 5
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.96 E-value=4.3e-28 Score=194.11 Aligned_cols=179 Identities=23% Similarity=0.273 Sum_probs=144.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccC-CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH--h
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVST-FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--L 116 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~--~ 116 (243)
++|+++|++|+|||||+|+|+|...+.... .++.|..+......+.+..+.||||||+.+.....+.....+.+++ .
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 589999999999999999999998765443 3456777777777789999999999999987655555555565554 3
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHhhhHHHHHHHcccc-CC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPST-WM 195 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~ 195 (243)
.+++|+||+|++++. +++.+...++.+++.||..+++|+++|+|++|... ..++++++....+.++.++++|+ ||
T Consensus 81 ~~g~~~illVi~~~~--~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~--~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 81 APGPHAFLLVVPLGR--FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE--GGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred CCCCEEEEEEEECCC--cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC--CCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 579999999988764 78899999999999999999999999999998763 34789999887789999999964 55
Q ss_pred cccc---------cc----CCCccchhhhcCCCCCCCcCc
Q 026113 196 KKKD---------IQ----GSFVPVVLVENSGRCAKNEND 222 (243)
Q Consensus 196 ~~~~---------~~----~~~i~~~~~~~~~~~~~~~~~ 222 (243)
+.+. .| ...|..++.+|++.+|++.++
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~~ 196 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKENGGKPYTNDMY 196 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 3331 11 157899999999999998764
No 6
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=7e-21 Score=154.56 Aligned_cols=175 Identities=26% Similarity=0.340 Sum_probs=125.6
Q ss_pred hcccccCChhhHHHHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEE
Q 026113 11 WMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLN 90 (243)
Q Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 90 (243)
..++..++....+...+..+..+-....|++|+++|+||+|||||||+|++.....+...+.++.........+++..+.
T Consensus 11 ~~~~~~~~~~~se~~l~~~~~~~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~ 90 (296)
T COG3596 11 LKGLLGLPSLLSERILEQLRMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLV 90 (296)
T ss_pred hhhhccChHHHHHHHHHHhhhhhhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceE
Confidence 44455556666666666666555556689999999999999999999999877767776666665555555667888999
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCC
Q 026113 91 IVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (243)
Q Consensus 91 viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~ 170 (243)
+|||||++++...+.+....+++++ +..|++|++++.+...+ ..+..++..+.-... .+++++++|.+|...+.
T Consensus 91 lwDtPG~gdg~~~D~~~r~~~~d~l--~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~~---~~~~i~~VtQ~D~a~p~ 164 (296)
T COG3596 91 LWDTPGLGDGKDKDAEHRQLYRDYL--PKLDLVLWLIKADDRAL-GTDEDFLRDVIILGL---DKRVLFVVTQADRAEPG 164 (296)
T ss_pred EecCCCcccchhhhHHHHHHHHHHh--hhccEEEEeccCCCccc-cCCHHHHHHHHHhcc---CceeEEEEehhhhhccc
Confidence 9999999999888877777777777 58899999988876434 334445555544332 27999999999986542
Q ss_pred -C---------CCHHHHHHhhhHHHHHHHcc
Q 026113 171 -R---------LDYEVFCSKRSEALLKFVSP 191 (243)
Q Consensus 171 -~---------~~~~~~~~~~~~~l~~~i~~ 191 (243)
+ ....++++.+.+.+.++++.
T Consensus 165 ~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~ 195 (296)
T COG3596 165 REWDSAGHQPSPAIKQFIEEKAEALGRLFQE 195 (296)
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 1 12455665555566666554
No 7
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.80 E-value=1.6e-18 Score=127.04 Aligned_cols=114 Identities=25% Similarity=0.395 Sum_probs=85.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH--HHHHHHHHHhcC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH--AIQLIKRFLLNK 118 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~--~~~~~~~~~~~~ 118 (243)
+|+++|.+|+|||||+|+|++.....++..+++|.........+.+..+.++||||+.+....... ..+.+.+.+ .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~--~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQI--S 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH--C
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH--H
Confidence 689999999999999999999876677888888888766667788999999999999876544321 122222222 6
Q ss_pred CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeC
Q 026113 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 163 (243)
Q Consensus 119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk 163 (243)
.+|++++|++.+. ...+.+..++++++ ..+|+++|+||
T Consensus 79 ~~d~ii~vv~~~~-~~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASN-PITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTS-HSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred HCCEEEEEEECCC-CCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 8899999988654 33455666666663 23799999998
No 8
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.79 E-value=1.5e-18 Score=132.57 Aligned_cols=122 Identities=17% Similarity=0.231 Sum_probs=88.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~ 119 (243)
++|+++|.+|+|||||+|+|+|.. ..++.+|++|.+...+.....+..+.++||||+++......+ .+..++++....
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e-e~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE-ERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH-HHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH-HHHHHHHHhhcC
Confidence 489999999999999999999999 468889999999888888889999999999998775443321 234455666679
Q ss_pred CcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCC
Q 026113 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (243)
Q Consensus 120 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~ 171 (243)
+|++++|++.. ++ +.+..++.++.+. ..|+++|+||+|..+...
T Consensus 79 ~D~ii~VvDa~--~l-~r~l~l~~ql~e~-----g~P~vvvlN~~D~a~~~g 122 (156)
T PF02421_consen 79 PDLIIVVVDAT--NL-ERNLYLTLQLLEL-----GIPVVVVLNKMDEAERKG 122 (156)
T ss_dssp SSEEEEEEEGG--GH-HHHHHHHHHHHHT-----TSSEEEEEETHHHHHHTT
T ss_pred CCEEEEECCCC--CH-HHHHHHHHHHHHc-----CCCEEEEEeCHHHHHHcC
Confidence 99999994443 43 3334444455543 379999999999864443
No 9
>COG1159 Era GTPase [General function prediction only]
Probab=99.78 E-value=3.7e-18 Score=140.54 Aligned_cols=124 Identities=20% Similarity=0.257 Sum_probs=99.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc-HHHHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN-YHAIQLIKRFLL 116 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~-~~~~~~~~~~~~ 116 (243)
+..-++++|++|+|||||+|+|+|.+++.+++.+.+|.....+..+.+..++.++||||+..+...- +-..+.....+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl- 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL- 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh-
Confidence 4567999999999999999999999999999999999988888888888999999999998774432 22222333323
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
.++|+||+|++.+. .+...+...++.++.. ..|+++++||+|...+
T Consensus 84 -~dvDlilfvvd~~~-~~~~~d~~il~~lk~~-----~~pvil~iNKID~~~~ 129 (298)
T COG1159 84 -KDVDLILFVVDADE-GWGPGDEFILEQLKKT-----KTPVILVVNKIDKVKP 129 (298)
T ss_pred -ccCcEEEEEEeccc-cCCccHHHHHHHHhhc-----CCCeEEEEEccccCCc
Confidence 59999999977664 2677888888888772 2699999999998644
No 10
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=3e-18 Score=148.31 Aligned_cols=120 Identities=21% Similarity=0.284 Sum_probs=97.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH--hc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--LN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~--~~ 117 (243)
..|+++|++|+|||||.|.|+|.+.+.+++.|+.|.+.......|.+..+.+|||+|+.+... +.+.+.++... ..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~--~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE--DELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc--hHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999975442 22222332211 22
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++|+|++... .+++.|..+.++++.. ++|+++|+||+|..
T Consensus 82 ~eADvilfvVD~~~-Git~~D~~ia~~Lr~~-----~kpviLvvNK~D~~ 125 (444)
T COG1160 82 EEADVILFVVDGRE-GITPADEEIAKILRRS-----KKPVILVVNKIDNL 125 (444)
T ss_pred HhCCEEEEEEeCCC-CCCHHHHHHHHHHHhc-----CCCEEEEEEcccCc
Confidence 59999999955542 3789999888888843 37999999999975
No 11
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.76 E-value=4.4e-18 Score=147.29 Aligned_cols=137 Identities=25% Similarity=0.355 Sum_probs=105.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~--~~~~~~~~~~ 115 (243)
.+++|+++|++++|||||+|+|+|++...+++.+++|.+......+++++.+.++||+|.-.-....+ +.+..++..-
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 57999999999999999999999999889999999999999999999999999999999964433332 2222222222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHh
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK 180 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~ 180 (243)
....+|++++|++... .+++.+.+.+..+.+. .+++++|+||||+.+.+....+++.+.
T Consensus 257 aI~~a~vvllviDa~~-~~~~qD~~ia~~i~~~-----g~~~vIvvNKWDl~~~~~~~~~~~k~~ 315 (444)
T COG1160 257 AIERADVVLLVIDATE-GISEQDLRIAGLIEEA-----GRGIVIVVNKWDLVEEDEATMEEFKKK 315 (444)
T ss_pred HHhhcCEEEEEEECCC-CchHHHHHHHHHHHHc-----CCCeEEEEEccccCCchhhHHHHHHHH
Confidence 2358999999955543 3778888888777765 379999999999975544555555443
No 12
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.75 E-value=2.3e-17 Score=137.07 Aligned_cols=135 Identities=21% Similarity=0.251 Sum_probs=101.1
Q ss_pred HHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 026113 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 107 (243)
Q Consensus 28 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~ 107 (243)
.+++++..+..-.+|++.|.+|+|||||++++++.+. .+.++|.+|...........+..+++|||||+.|-...+..-
T Consensus 157 ~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~ 235 (346)
T COG1084 157 HLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNE 235 (346)
T ss_pred HHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcH
Confidence 3444445566778999999999999999999999985 788999999988888888889999999999998754433211
Q ss_pred HHHHHHHHhcCCCcEEEEEEeCCCcc-c-ChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 108 IQLIKRFLLNKTIDVLLYVDRLDVYR-V-DNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 108 ~~~~~~~~~~~~~~~il~v~~~d~~~-~-~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
++.-.-.....=.++|||+++....+ + -+.+..+++.+...|. .|+++|+||+|..
T Consensus 236 IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~ 293 (346)
T COG1084 236 IERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIA 293 (346)
T ss_pred HHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEeccccc
Confidence 11110001113468999998876666 2 2455677888888876 5999999999986
No 13
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.74 E-value=4.9e-17 Score=141.21 Aligned_cols=124 Identities=24% Similarity=0.325 Sum_probs=95.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL- 115 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~- 115 (243)
.+.++++++|+||+|||||+|+|++++.+.|.+.|++|.+........+|.++.++||+|+-++...-+. . -+.+..
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~-i-GIeRs~~ 292 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVER-I-GIERAKK 292 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHH-H-HHHHHHH
Confidence 4779999999999999999999999999999999999999999999999999999999999655433221 1 111111
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
....+|+||+|++.... .++.+...++.+. ..+|+++|.||.|+..+
T Consensus 293 ~i~~ADlvL~v~D~~~~-~~~~d~~~~~~~~------~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 293 AIEEADLVLFVLDASQP-LDKEDLALIELLP------KKKPIIVVLNKADLVSK 339 (454)
T ss_pred HHHhCCEEEEEEeCCCC-CchhhHHHHHhcc------cCCCEEEEEechhcccc
Confidence 22589999999555432 4566666665111 12699999999999743
No 14
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.72 E-value=1e-16 Score=124.76 Aligned_cols=125 Identities=21% Similarity=0.178 Sum_probs=79.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~ 119 (243)
+|+++|.+|+|||||+|+|.+... .++..+.+|..+........+. .+.+|||||+.+...........+.+.+ ..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~--~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHI--ER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHH--Hh
Confidence 689999999999999999998764 4444455555555555555665 8999999998643322111111111111 37
Q ss_pred CcEEEEEEeCCCc-ccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 120 IDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 120 ~~~il~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
+|++++|+++... ...+....+.+.+..........|+++|+||+|+.+
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 8999999777543 222333455555555432222479999999999853
No 15
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.7e-16 Score=122.67 Aligned_cols=128 Identities=19% Similarity=0.182 Sum_probs=94.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
--+||+|+|.+|+|||+|...+.+... ......+.+.+........+|. .++||||+|+...+ .....|+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f-~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFr-------tit~syY 79 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTF-TESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFR-------TITSSYY 79 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCc-chhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHh-------hhhHhhc
Confidence 358999999999999999999988763 3333333444555555566665 79999999994332 1222232
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~ 177 (243)
+++|+||+|++++..........|++.+.+..... .|.++|+||+|+.+....+.++.
T Consensus 80 --R~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~~~v~~~~a 137 (205)
T KOG0084|consen 80 --RGAHGIIFVYDITKQESFNNVKRWIQEIDRYASEN--VPKLLVGNKCDLTEKRVVSTEEA 137 (205)
T ss_pred --cCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCC--CCeEEEeeccccHhheecCHHHH
Confidence 59999999999976555566778999999887765 59999999999986666665544
No 16
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.72 E-value=1.2e-16 Score=134.03 Aligned_cols=118 Identities=16% Similarity=0.267 Sum_probs=82.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHHHhcCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLNKT 119 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~-~~~~~~~~~~~~~~~~ 119 (243)
+|+++|++|+|||||+|+|+|.....+++.+.+|...........+.++.+|||||+.+.... .....+....++ .+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l--~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAI--GG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHH--hh
Confidence 689999999999999999999987777887777776555444456678999999999765321 111222222333 58
Q ss_pred CcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 120 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+|++++|++.+.. ...+..++..+.. ...|+++|+||+|+.
T Consensus 80 aDvvl~VvD~~~~--~~~~~~i~~~l~~-----~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 80 VDLILFVVDSDQW--NGDGEFVLTKLQN-----LKRPVVLTRNKLDNK 120 (270)
T ss_pred CCEEEEEEECCCC--CchHHHHHHHHHh-----cCCCEEEEEECeeCC
Confidence 9999999776542 2223344444433 136999999999985
No 17
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.71 E-value=3.2e-16 Score=121.76 Aligned_cols=122 Identities=22% Similarity=0.254 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHH--HHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAI--QLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~--~~~~~~~~~ 117 (243)
.+|+++|.+|+|||||+|++++... .+...+..|...........+.++.+|||||+.+......... ..+. .+ .
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~-~~-~ 77 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAIT-AL-A 77 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHH-HH-H
Confidence 3799999999999999999999874 3333444454444444556678999999999865332221111 1111 11 1
Q ss_pred CCCcEEEEEEeCCCcc-cC-hhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~-~~-~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
...|++|+|+++.... +. +....++..+.+.+. ..|+++|+||+|+.
T Consensus 78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~ 126 (168)
T cd01897 78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLL 126 (168)
T ss_pred hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccC
Confidence 2468999997765322 11 333456666665442 36999999999985
No 18
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.71 E-value=7.7e-16 Score=121.37 Aligned_cols=122 Identities=20% Similarity=0.220 Sum_probs=81.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH---HHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY---HAIQLIK 112 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~---~~~~~~~ 112 (243)
.+..+|+++|.+|+|||||+|++++.. ...++..+++|..+..+.. + ..+.+|||||+........ ++...+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 367899999999999999999999875 3334444444544333322 2 3799999999876543322 2222333
Q ss_pred HHHh-cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 113 RFLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 113 ~~~~-~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++. ...+|++++|++... .++..+..++..+... ..|+++|+||+|+.
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~-~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~ 142 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRH-PLKELDLEMLEWLRER-----GIPVLIVLTKADKL 142 (179)
T ss_pred HHHHhChhhcEEEEEecCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccC
Confidence 4442 236789999976653 3666666655555432 36999999999985
No 19
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.70 E-value=9.7e-16 Score=128.63 Aligned_cols=124 Identities=19% Similarity=0.317 Sum_probs=81.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCC-------CCCCC--eeEEEEeeeCC--eEEEEEeCCCCCCCCCCcH-
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGP--RPVMVSRSRAG--FTLNIVDTPGLIEGGYVNY- 105 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~-------~~~t~--~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~- 105 (243)
-.++|+++|.+|+|||||+|++++......... ...|. .........+| .++.+|||||+++......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999999876543221 11121 12223334455 4799999999987643221
Q ss_pred --HHHHHHH----HHH------------hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 106 --HAIQLIK----RFL------------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 106 --~~~~~~~----~~~------------~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.+.+++. .++ ....+|+++|+++.....+.+.+..+++.+.+ ..|+++|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~------~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK------RVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc------cCCEEEEEECCCcC
Confidence 1111111 111 12368999999766544566777777777764 26999999999986
No 20
>PRK15494 era GTPase Era; Provisional
Probab=99.70 E-value=4.4e-16 Score=134.42 Aligned_cols=122 Identities=19% Similarity=0.248 Sum_probs=86.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLL 116 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~-~~~~~~~~~~~~~~ 116 (243)
+.++|+++|.+|+|||||+|+|+|.....+++.+.+|..........++.++.+|||||+.+... ......+....++
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l- 129 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL- 129 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh-
Confidence 56799999999999999999999998766666666666655556667888999999999965432 2222222222222
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++|+|++... .+.+.+..++..+... ..|.++|+||+|+.
T Consensus 130 -~~aDvil~VvD~~~-s~~~~~~~il~~l~~~-----~~p~IlViNKiDl~ 173 (339)
T PRK15494 130 -HSADLVLLIIDSLK-SFDDITHNILDKLRSL-----NIVPIFLLNKIDIE 173 (339)
T ss_pred -hhCCEEEEEEECCC-CCCHHHHHHHHHHHhc-----CCCEEEEEEhhcCc
Confidence 58999999966432 3555555566555432 25788999999985
No 21
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.70 E-value=7.6e-16 Score=119.55 Aligned_cols=126 Identities=26% Similarity=0.349 Sum_probs=81.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~--~~~~~~~~~~ 115 (243)
.+++|+++|.+|+|||||+|+|++.........+.++...........+..+.+|||||+.+...... +.........
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 36899999999999999999999987544555555555554455566788899999999976532211 1111111111
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
...++|++++|++.... .+.....++..+.. . ..|+++|+||+|+.+.
T Consensus 81 ~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~---~--~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 81 AIERADVVLLVIDATEG-ITEQDLRIAGLILE---E--GKALVIVVNKWDLVEK 128 (174)
T ss_pred HHhhcCeEEEEEeCCCC-cchhHHHHHHHHHh---c--CCCEEEEEeccccCCc
Confidence 12589999999776532 33333333333322 1 2699999999998633
No 22
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.70 E-value=8.2e-16 Score=117.59 Aligned_cols=119 Identities=24% Similarity=0.304 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH-HHHHHHHHHHhcC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY-HAIQLIKRFLLNK 118 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~-~~~~~~~~~~~~~ 118 (243)
++|+++|.+|+|||||+|++++.........++++...........+.++.+|||||+.+...... ........+ ..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~--~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREA--IE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHH--Hh
Confidence 589999999999999999999987655566666666655555666788999999999976543211 111111122 25
Q ss_pred CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
.+|++++|++++. ..+..+...+.. . ...|+++|+||+|+.+
T Consensus 80 ~~~~~v~v~d~~~-~~~~~~~~~~~~---~----~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 80 EADLVLFVIDASR-GLDEEDLEILEL---P----ADKPIIVVLNKSDLLP 121 (157)
T ss_pred hCCEEEEEEECCC-CCCHHHHHHHHh---h----cCCCEEEEEEchhcCC
Confidence 8999999988764 233333333322 1 2379999999999863
No 23
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.70 E-value=2.6e-16 Score=120.49 Aligned_cols=117 Identities=17% Similarity=0.254 Sum_probs=80.7
Q ss_pred EEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHHHhcCCCc
Q 026113 43 LVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLLNKTID 121 (243)
Q Consensus 43 llvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~-~~~~~~~~~~~~~~~~~~~ 121 (243)
+++|.+|+|||||+|+|++.........+++|...........+..+.+|||||+.+... ...........++ .++|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~--~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAI--EEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHH--HhCC
Confidence 478999999999999999987555556666666666666677888999999999976533 1111111222222 4799
Q ss_pred EEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 122 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 122 ~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
++++|++... ..+..+..+.++++.. ..|+++|+||+|+.
T Consensus 79 ~ii~v~d~~~-~~~~~~~~~~~~~~~~-----~~piiiv~nK~D~~ 118 (157)
T cd01894 79 VILFVVDGRE-GLTPADEEIAKYLRKS-----KKPVILVVNKVDNI 118 (157)
T ss_pred EEEEEEeccc-cCCccHHHHHHHHHhc-----CCCEEEEEECcccC
Confidence 9999977643 2334444455555432 27999999999985
No 24
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.69 E-value=9.5e-16 Score=117.98 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=82.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHH-HHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAI-QLIKRFLL 116 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~-~~~~~~~~ 116 (243)
..++|+++|.+|+|||||+|++++.........+.++...........+..+.+|||||+.+......+.. +.....
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~-- 79 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA-- 79 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH--
Confidence 46899999999999999999999987655554444443333333444567899999999976543322221 111222
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
...+|++++|++.... .......+.+.+... ..|+++|+||+|+.
T Consensus 80 ~~~~d~i~~v~d~~~~-~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~ 124 (168)
T cd04163 80 LKDVDLVLFVVDASEP-IGEGDEFILELLKKS-----KTPVILVLNKIDLV 124 (168)
T ss_pred HHhCCEEEEEEECCCc-cCchHHHHHHHHHHh-----CCCEEEEEEchhcc
Confidence 2589999999777542 344455555555432 26999999999985
No 25
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.69 E-value=9.5e-16 Score=132.72 Aligned_cols=125 Identities=18% Similarity=0.197 Sum_probs=83.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL- 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~- 115 (243)
..++|+++|.+|+|||||+|+|++.. +.+.+.+.+|.++......+ ++.++.+|||||+... ...+..+.++..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~--l~~~lie~f~~tle 264 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD--LPHELVAAFRATLE 264 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCccccc--CCHHHHHHHHHHHH
Confidence 34899999999999999999999987 35566666677776666666 5789999999998432 1112222222221
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
....+|++|+|+++......+....+...+... +. ...|+++|+||+|+.
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLL 314 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCC
Confidence 124899999997775322222222333444433 31 136999999999985
No 26
>PRK00089 era GTPase Era; Reviewed
Probab=99.69 E-value=7.9e-16 Score=130.52 Aligned_cols=122 Identities=21% Similarity=0.291 Sum_probs=86.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLL 116 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~-~~~~~~~~~~ 116 (243)
+...|+++|.+|+|||||+|+|+|.+.+.+++.+.+|...........+.++.++||||+.+....-.+ ........+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~- 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL- 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH-
Confidence 457799999999999999999999998777776666655444444445579999999999765422111 112222222
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+|++++|++++. .++..+..+++.+.. ...|+++|+||+|+.
T Consensus 83 -~~~D~il~vvd~~~-~~~~~~~~i~~~l~~-----~~~pvilVlNKiDl~ 126 (292)
T PRK00089 83 -KDVDLVLFVVDADE-KIGPGDEFILEKLKK-----VKTPVILVLNKIDLV 126 (292)
T ss_pred -hcCCEEEEEEeCCC-CCChhHHHHHHHHhh-----cCCCEEEEEECCcCC
Confidence 58999999977764 355556655555552 136999999999985
No 27
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.7e-16 Score=122.23 Aligned_cols=128 Identities=15% Similarity=0.142 Sum_probs=92.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..+||+|+|.+|+|||||+-.+..... .....++.+..........++ .++.||||+|+......-+. ++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F-~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapM---Yy---- 75 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQF-HENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPM---YY---- 75 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCcc-ccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccc---ee----
Confidence 469999999999999999988876652 332333333333444444555 67889999999765444432 22
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~ 177 (243)
+++++.|+|++++........+.|++.|++..+.+ ..+.+|+||+|+...+.+++++.
T Consensus 76 --RgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~--~vialvGNK~DL~~~R~V~~~ea 133 (200)
T KOG0092|consen 76 --RGANAAIVVYDITDEESFEKAKNWVKELQRQASPN--IVIALVGNKADLLERREVEFEEA 133 (200)
T ss_pred --cCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCC--eEEEEecchhhhhhcccccHHHH
Confidence 59999999999987655566788888888877643 35778999999987667666654
No 28
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.68 E-value=2.5e-15 Score=116.27 Aligned_cols=119 Identities=17% Similarity=0.168 Sum_probs=77.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|.+|+|||||+|++++.... ....+..+.+......... ...+.+|||||.... ......++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~-- 70 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFV-SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY-------LEVRNEFY-- 70 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCeEEEEEEEECCccHHH-------HHHHHHHh--
Confidence 58999999999999999999988742 2222222222222223333 357889999998421 11112222
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc---cccccEEEEEeCCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE---QIWKRALIVLTHAQLSL 168 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~---~~~~~~ivV~tk~D~~~ 168 (243)
.++|++|+|++++.....+....|+..+.+.... ....|+++|+||+|+.+
T Consensus 71 ~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 71 KDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred ccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence 5899999998876533223445677777665542 13379999999999863
No 29
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.68 E-value=9.8e-16 Score=122.67 Aligned_cols=117 Identities=21% Similarity=0.251 Sum_probs=78.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC----CCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ----SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
+++|+++|.+|+|||||+|+|+|.........+ .++.....+.. .....+.+|||||+.+.....++..+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~---- 75 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEE---- 75 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHH----
Confidence 589999999999999999999986532211111 11111111111 123479999999998765443333222
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
....++|++++| .+. ++++.+..+++.+.+. + +|+++|+||+|+..
T Consensus 76 ~~~~~~d~~l~v--~~~-~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~ 121 (197)
T cd04104 76 MKFSEYDFFIII--SST-RFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDL 121 (197)
T ss_pred hCccCcCEEEEE--eCC-CCCHHHHHHHHHHHHh-C----CCEEEEEecccchh
Confidence 122578999998 333 5788899999888775 3 68999999999853
No 30
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.68 E-value=1.1e-15 Score=118.67 Aligned_cols=122 Identities=21% Similarity=0.149 Sum_probs=77.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCee-EEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRP-VMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~ 118 (243)
+||+++|.+|+|||||++++++... .....+...... ...........+.+|||||....... . ..++ .
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~---~----~~~~--~ 71 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF-RESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAM---Q----RLSI--S 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHH---H----HHHh--h
Confidence 7899999999999999999998763 222222211111 11112223457899999998543211 1 1111 4
Q ss_pred CCcEEEEEEeCCCcccChhHHHHHHHHHHHhccc-ccccEEEEEeCCCCCCCCC
Q 026113 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ-IWKRALIVLTHAQLSLPDR 171 (243)
Q Consensus 119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~-~~~~~ivV~tk~D~~~~~~ 171 (243)
++|++++|++++.....+....+++.+.+..+.. ...|+++|+||+|+.+.+.
T Consensus 72 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~ 125 (165)
T cd04140 72 KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE 125 (165)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCe
Confidence 8899999988876443344566666676655422 3469999999999864333
No 31
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.68 E-value=1.5e-15 Score=135.44 Aligned_cols=120 Identities=18% Similarity=0.226 Sum_probs=90.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHHHhcCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLNKT 119 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~-~~~~~~~~~~~~~~~~ 119 (243)
+|+++|++|+|||||+|.|++...+.+...++.|.+.......+.+..+.+|||||+...... .+...+....++ .+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~--~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAI--EE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHH--hh
Confidence 589999999999999999999887677888888888878888889999999999998543211 112222222222 58
Q ss_pred CcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 120 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
+|++++|++... ..+..+..+.+++++. .+|+++|+||+|+..
T Consensus 79 ad~vl~vvD~~~-~~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~ 121 (429)
T TIGR03594 79 ADVILFVVDGRE-GLTPEDEEIAKWLRKS-----GKPVILVANKIDGKK 121 (429)
T ss_pred CCEEEEEEeCCC-CCCHHHHHHHHHHHHh-----CCCEEEEEECccCCc
Confidence 999999976643 3566677777777653 379999999999863
No 32
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.67 E-value=5e-15 Score=114.86 Aligned_cols=121 Identities=13% Similarity=0.112 Sum_probs=77.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+||+++|.+|+|||||++++.+...... ..+..+.+.......+++ ..+.+|||||... .......++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~- 73 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSER-QGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQER-------FRTITQSYY- 73 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCccc-CCCccceEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHh-
Confidence 58999999999999999999987653221 112222222233344555 4789999999632 111122222
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~ 171 (243)
..+|++++|++++.....+....|+..+...... ..|+++|+||+|+...+.
T Consensus 74 -~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~Dl~~~~~ 125 (165)
T cd01864 74 -RSANGAIIAYDITRRSSFESVPHWIEEVEKYGAS--NVVLLLIGNKCDLEEQRE 125 (165)
T ss_pred -ccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEECcccccccc
Confidence 4799999998887543233445677776654322 368999999999864433
No 33
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.67 E-value=2.3e-15 Score=116.00 Aligned_cols=118 Identities=16% Similarity=0.133 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
.||+++|++|+|||||+|++++.... ....+..+.+.........+ ..+.+|||||.... ...+..++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~-------~~~~~~~~-- 70 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFD-NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERF-------RSLIPSYI-- 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHh--
Confidence 48999999999999999999988743 23333334444444444555 36899999996321 11222222
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
..+|++++|++++.....+....++..+....+. ..|+++|+||+|+...
T Consensus 71 ~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~~ 120 (161)
T cd01861 71 RDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSDK 120 (161)
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhcccc
Confidence 5889999998886533223334566665554433 3699999999998533
No 34
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.67 E-value=2e-15 Score=134.92 Aligned_cols=121 Identities=23% Similarity=0.309 Sum_probs=84.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLL 116 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~-~~~~~~~~~~ 116 (243)
..++|+++|.+|+|||||+|+|++.+...+.+.+++|.+.......++|.++.+|||||+.++...-+. ..+....+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~-- 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREA-- 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHH--
Confidence 568999999999999999999999886667777888877777777788999999999999653221111 01111112
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
...+|++++|++.+.. .+..+...+ .. ....|+++|+||+|+.+
T Consensus 292 ~~~aD~il~VvD~s~~-~s~~~~~~l---~~----~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 292 IEEADLVLLVLDASEP-LTEEDDEIL---EE----LKDKPVIVVLNKADLTG 335 (449)
T ss_pred HHhCCEEEEEecCCCC-CChhHHHHH---Hh----cCCCCcEEEEEhhhccc
Confidence 2589999999776432 222233222 22 12369999999999863
No 35
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.67 E-value=2.2e-15 Score=134.04 Aligned_cols=122 Identities=20% Similarity=0.260 Sum_probs=86.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH-HHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA-IQLIKRFL 115 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~-~~~~~~~~ 115 (243)
...++|+++|.+|+|||||+|++++.....+...+++|.+.......++|.++.+|||||+.+....-+.. .+....++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 36799999999999999999999998766777888888777777778889999999999996543211110 11111222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+|++++|++.+.. .+..+. ++..+.. ...|+++|+||+|+.
T Consensus 281 --~~aD~il~V~D~s~~-~s~~~~-~l~~~~~-----~~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 281 --KQADLVIYVLDASQP-LTKDDF-LIIDLNK-----SKKPFILVLNKIDLK 323 (442)
T ss_pred --hhCCEEEEEEECCCC-CChhHH-HHHHHhh-----CCCCEEEEEECccCC
Confidence 589999999777542 222232 4333321 136999999999985
No 36
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=1.9e-15 Score=136.05 Aligned_cols=123 Identities=20% Similarity=0.273 Sum_probs=89.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFL 115 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~-~~~~~~~~~~~~~ 115 (243)
....+|+++|.+|+|||||+|+|++...+.+...++.|.+.......+.+..+.+|||||+..... ...........++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 355799999999999999999999987666677777777777777778899999999999863211 1112222222222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+|++|+|++... ..+..+..+..++... ..|+++|+||+|+.
T Consensus 116 --~~aD~il~VvD~~~-~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~ 159 (472)
T PRK03003 116 --RTADAVLFVVDATV-GATATDEAVARVLRRS-----GKPVILAANKVDDE 159 (472)
T ss_pred --HhCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECccCC
Confidence 48999999987754 2445556666666532 37999999999985
No 37
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=1.5e-15 Score=118.88 Aligned_cols=121 Identities=21% Similarity=0.254 Sum_probs=89.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKR 113 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~---~~~~~~~~~ 113 (243)
....|+++|++|+|||||||+|+|.. .+.++..|+.|+....+. +++. +.+||.||++-..... +++...+.+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~--~~~~-~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFE--VDDE-LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEE--ecCc-EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 45799999999999999999999965 577888888877544433 3332 8899999998665443 345556666
Q ss_pred HHhc-CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 114 FLLN-KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 114 ~~~~-~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
|+.. ....+++++ +|..+ +.+.|.++++++.+. ..|+++|+||+|...
T Consensus 100 YL~~R~~L~~vvll--iD~r~~~~~~D~em~~~l~~~-----~i~~~vv~tK~DKi~ 149 (200)
T COG0218 100 YLEKRANLKGVVLL--IDARHPPKDLDREMIEFLLEL-----GIPVIVVLTKADKLK 149 (200)
T ss_pred HHhhchhheEEEEE--EECCCCCcHHHHHHHHHHHHc-----CCCeEEEEEccccCC
Confidence 7643 345666666 44434 667789999888875 379999999999873
No 38
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=1.8e-15 Score=135.23 Aligned_cols=120 Identities=17% Similarity=0.246 Sum_probs=89.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHHHhcC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLNK 118 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~-~~~~~~~~~~~~~~~ 118 (243)
.+|+++|.+|+|||||+|+|++...+.+...++.|.+.......+.+..+.+|||||+.+.... .....+....++ .
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAI--E 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHH--H
Confidence 5899999999999999999999987667777888877777777888999999999999763221 111111122222 5
Q ss_pred CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
++|++|+|++... ..+..+..+.+++++. ..|+++|+||+|+.
T Consensus 80 ~ad~il~vvd~~~-~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~ 122 (435)
T PRK00093 80 EADVILFVVDGRA-GLTPADEEIAKILRKS-----NKPVILVVNKVDGP 122 (435)
T ss_pred hCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCcEEEEEECccCc
Confidence 8999999977654 3556666666666653 36999999999964
No 39
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.66 E-value=2.2e-15 Score=129.51 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=85.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~ 118 (243)
..|.++|.+|||||||+|+|++... .++.++.+|..+......+ ++.++.+|||||+.+........-..+.+++ .
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi--e 235 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI--E 235 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh--h
Confidence 4789999999999999999998764 4677788888877777766 5678999999999765433222211222222 3
Q ss_pred CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++++++|++++.....+....+.+.+......-..+|+++|+||+|+.
T Consensus 236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLL 284 (335)
T ss_pred hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence 7899999977754222223344555554432211247999999999985
No 40
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.66 E-value=1.5e-15 Score=136.72 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=89.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV--NYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~--~~~~~~~~~~~~ 115 (243)
...+|+++|.+|+|||||+|+|++.....++..+++|.+.......+++..+.+|||||+...... ..+....++...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 468999999999999999999999876566777777777766666778899999999998543221 123333333222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
....+|++++|++++. ..+..+..++..+.. ..+|+++|+||+|+.
T Consensus 290 ~i~~ad~vilV~Da~~-~~s~~~~~~~~~~~~-----~~~piIiV~NK~Dl~ 335 (472)
T PRK03003 290 AIEAAEVAVVLIDASE-PISEQDQRVLSMVIE-----AGRALVLAFNKWDLV 335 (472)
T ss_pred HHhcCCEEEEEEeCCC-CCCHHHHHHHHHHHH-----cCCCEEEEEECcccC
Confidence 2258999999977754 345555555554443 136999999999986
No 41
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.66 E-value=3.7e-15 Score=115.04 Aligned_cols=118 Identities=18% Similarity=0.159 Sum_probs=75.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+||+++|.+|+|||||++++.+... .....+++..........++ ..+.+|||||........ ..++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~- 70 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMR-------DLYI- 70 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHH-------HHHh-
Confidence 37999999999999999999997653 22222222222223334444 467889999985432111 1122
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
.++|++++|++++.....+....+++.+.+.... ...|+++|+||+|+.+
T Consensus 71 -~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~ 120 (163)
T cd04136 71 -KNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLED 120 (163)
T ss_pred -hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 4899999998886543223445566666554322 2369999999999864
No 42
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.66 E-value=4.9e-15 Score=118.95 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=80.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+.|+++|..|+|||||++.+..... .....++.+..........++ ..+.+|||+|..... .....++
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f-~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~-------~l~~~y~-- 70 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTF-CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFN-------SITSAYY-- 70 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhH-------HHHHHHh--
Confidence 4799999999999999999997663 222222222233333345555 578999999984321 1112222
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
.++|++++|++++.....+....|+..+.+....+ .|+++|+||+|+...+..+
T Consensus 71 ~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~--~piilVgNK~DL~~~~~v~ 124 (202)
T cd04120 71 RSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETDREIS 124 (202)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccccC
Confidence 58999999999876443344456777766654433 6999999999996444433
No 43
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.66 E-value=5.5e-15 Score=118.77 Aligned_cols=125 Identities=17% Similarity=0.136 Sum_probs=78.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHHH-
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFL- 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~viDTPG~~~~~~~~~~~~~~~~~~~- 115 (243)
..++|+++|.+|+|||||+|.+++... .+...+..|..+......+.+. .+.+|||||+.+... ....+.+....
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~~ 116 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRSTLE 116 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchh-ccCCccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHHHH
Confidence 458999999999999999999999864 2223333343444444444444 899999999864321 12111121111
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
....+|++++|++++..........+.+.+...... ..|+++|+||+|+.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~--~~~viiV~NK~Dl~ 166 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAE--DIPMILVLNKIDLL 166 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcC--CCCEEEEEEccccC
Confidence 124899999998775432223233444555443222 26999999999986
No 44
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.65 E-value=3.7e-15 Score=130.56 Aligned_cols=124 Identities=18% Similarity=0.165 Sum_probs=86.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~ 119 (243)
.|.+||.+|||||||+|+|++... .++.+|.+|..+........+ .++.++||||+..........-..+.+.+ ..
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i--~r 237 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHL--ER 237 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHH--Hh
Confidence 799999999999999999999875 678888888888887776664 57999999999865433221111222222 48
Q ss_pred CcEEEEEEeCC---CcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 120 IDVLLYVDRLD---VYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 120 ~~~il~v~~~d---~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
++++++|+++. .....+....+++.+......-..+|+++|+||+|+.
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 89999997654 1122233345555555432211237999999999985
No 45
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.65 E-value=1e-14 Score=113.47 Aligned_cols=123 Identities=16% Similarity=0.164 Sum_probs=77.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+||+++|.+|+|||||++++.+... .....++.+...........+ ..+.+|||||..... .....++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-------~~~~~~~- 73 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF-NPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFR-------TITTAYY- 73 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC-CcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHH-------HHHHHHh-
Confidence 48999999999999999999998763 222223322222222333444 478999999973221 1111222
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
.++|++++|++++.......-..++..+...... ..|+++|+||+|+.+.....
T Consensus 74 -~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~iiv~nK~Dl~~~~~~~ 127 (167)
T cd01867 74 -RGAMGIILVYDITDEKSFENIRNWMRNIEEHASE--DVERMLVGNKCDMEEKRVVS 127 (167)
T ss_pred -CCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEECcccccccCCC
Confidence 4899999998886533222334566656554322 36999999999996443333
No 46
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.65 E-value=8.9e-15 Score=113.56 Aligned_cols=120 Identities=14% Similarity=0.097 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|.+|+|||||++++.+.... ....++.+..........++ ..+.+|||||..... .+.... .
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~--------~~~~~~-~ 71 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYR--------TITTAY-Y 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH--------HHHHHH-c
Confidence 79999999999999999999987632 11122222111111222333 579999999974221 111111 1
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~ 171 (243)
.++|++++|++++.....+.-..|++.+...... ..|+++|+||+|+.+.+.
T Consensus 72 ~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~nK~Dl~~~~~ 123 (165)
T cd01865 72 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVILVGNKCDMEDERV 123 (165)
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCCEEEEEECcccCcccc
Confidence 5899999998876433223334566665544322 258999999999964433
No 47
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.65 E-value=6.9e-16 Score=120.54 Aligned_cols=121 Identities=21% Similarity=0.209 Sum_probs=75.4
Q ss_pred EEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcE
Q 026113 44 VMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 122 (243)
Q Consensus 44 lvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (243)
++|++|+|||||+|+|++... .+...+.+|..+......+. +.++.+|||||+.+.....+.....+...+ .++|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~--~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHI--RRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHH--hccCE
Confidence 579999999999999999875 44555555555555555667 889999999998643222211111111111 37999
Q ss_pred EEEEEeCCCcc------cChhHHHHHHHHHHHhcc-----cccccEEEEEeCCCCC
Q 026113 123 LLYVDRLDVYR------VDNLDKQITRAITDNFGE-----QIWKRALIVLTHAQLS 167 (243)
Q Consensus 123 il~v~~~d~~~------~~~~~~~~l~~l~~~~~~-----~~~~~~ivV~tk~D~~ 167 (243)
+++|++..... ..+....+...+...... ....|+++|+||+|+.
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 133 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLD 133 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcC
Confidence 99997765421 111222333333322211 1247999999999985
No 48
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.65 E-value=3.5e-15 Score=133.04 Aligned_cols=124 Identities=25% Similarity=0.357 Sum_probs=89.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH--HHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH--AIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~--~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||+|++++.+...+...+++|.+.........+..+.+|||||+.+.....+. .....+...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 458999999999999999999999876566777777776666666778889999999999765543321 111111111
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
....+|++++|++... ..+..+..++..+.+. .+|+++|+||+|+.
T Consensus 251 ~~~~ad~~ilV~D~~~-~~~~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 251 AIERADVVLLVLDATE-GITEQDLRIAGLILEA-----GKALVIVVNKWDLV 296 (429)
T ss_pred HHHhCCEEEEEEECCC-CccHHHHHHHHHHHHc-----CCcEEEEEECcccC
Confidence 2258999999977754 3556666655554432 26999999999986
No 49
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.65 E-value=1.1e-14 Score=112.88 Aligned_cols=121 Identities=16% Similarity=0.151 Sum_probs=77.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
-++|+++|.+|+|||||+|++++... .....++.+...........+ ..+.+|||||... .......++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~- 73 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEF-NLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER-------YRAITSAYY- 73 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHH-------HHHHHHHHH-
Confidence 37999999999999999999998864 222233333333333444455 3689999999732 111112222
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~ 171 (243)
..++++++|+++........-.+++..+.+.... ..|+++|+||+|+...+.
T Consensus 74 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pi~vv~nK~Dl~~~~~ 125 (165)
T cd01868 74 -RGAVGALLVYDITKKQTFENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRA 125 (165)
T ss_pred -CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccccc
Confidence 4789999998875433223334566666555432 269999999999864333
No 50
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.65 E-value=7.9e-15 Score=117.51 Aligned_cols=126 Identities=16% Similarity=0.143 Sum_probs=77.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCC-cHHHHHHHHHHHh
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYV-NYHAIQLIKRFLL 116 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~-~~~~~~~~~~~~~ 116 (243)
+||+++|.+|+|||||++.+++.... ....|..+.........+++ ..+.+|||||..+.... ..+.......++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~-~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~- 78 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFP-EEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGL- 78 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCC-cccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhh-
Confidence 58999999999999999999987632 22223332222222344566 46889999998643221 222221111112
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc-ccccccEEEEEeCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG-EQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~-~~~~~~~ivV~tk~D~~~ 168 (243)
..+|++++|++++.....+....+.+.+..... .....|+++|+||+|+..
T Consensus 79 -~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 79 -RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred -ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 589999999888643222333455555555431 112369999999999953
No 51
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.65 E-value=3.8e-15 Score=114.31 Aligned_cols=115 Identities=17% Similarity=0.233 Sum_probs=77.5
Q ss_pred EEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEE
Q 026113 44 VMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123 (243)
Q Consensus 44 lvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~i 123 (243)
++|.+|+|||||+|++++.. +.++..+++|.........+.+..+.+|||||+.+......+ ....+.++...++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~-~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSED-EKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChh-HHHHHHHhcCCCCcEE
Confidence 57999999999999999986 355556666666655566677889999999999765443211 1112233333689999
Q ss_pred EEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 124 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 124 l~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
++|++... . +....+...+.+ ..+|+++|+||+|+.+
T Consensus 79 i~v~d~~~--~-~~~~~~~~~~~~-----~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 79 VNVVDATN--L-ERNLYLTLQLLE-----LGLPVVVALNMIDEAE 115 (158)
T ss_pred EEEeeCCc--c-hhHHHHHHHHHH-----cCCCEEEEEehhhhcc
Confidence 99966643 2 222333333332 1379999999999863
No 52
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.65 E-value=6.2e-15 Score=113.86 Aligned_cols=119 Identities=21% Similarity=0.179 Sum_probs=75.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+||+++|.+|+|||||++++++... .....+++...........+ ..+.+|||||..+... ....++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~- 71 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSA-------MREQYM- 71 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhH-------HHHHHH-
Confidence 47999999999999999999998753 22322222222222334455 4688999999853321 112222
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
.++|++++|++++.....+....+...+...... ...|+++|+||+|+...
T Consensus 72 -~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 72 -RTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDR-DEFPMILVGNKADLEHQ 122 (164)
T ss_pred -hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEeeCcccccc
Confidence 4889999998886533223334455555544322 23699999999998633
No 53
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1e-15 Score=118.19 Aligned_cols=130 Identities=14% Similarity=0.081 Sum_probs=93.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
+..|++++|..++||||||+.++-... .....+..+.+.......+.|+ .+++|||+|+...+..-+ .|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~f-d~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslip-------sY~ 92 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP-------SYI 92 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhh-cccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhh-------hhc
Confidence 558999999999999999999996652 3333344444444444455554 799999999953332221 222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFC 178 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~ 178 (243)
+++.++++|+++......+.-.+|++.+...-|.+- ..+++|+||.||.+++..+.++-.
T Consensus 93 --Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dkrqvs~eEg~ 152 (221)
T KOG0094|consen 93 --RDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDKRQVSIEEGE 152 (221)
T ss_pred --cCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccchhhhhHHHHH
Confidence 589999999999765555667788888887777532 579999999999977776666554
No 54
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.64 E-value=1.5e-14 Score=112.38 Aligned_cols=121 Identities=16% Similarity=0.131 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCC-CCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~-t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
+||+++|.+|+|||||++++.+... ....+++ +...........+ ..+.+|||||.... ......++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~- 72 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERF-------RAVTRSYY- 72 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHh-
Confidence 7999999999999999999997753 2222222 2222222233444 47899999997321 11122222
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
.++|++++|++++.....+....++..+...... ..|+++|+||+|+......+
T Consensus 73 -~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iiiv~nK~Dl~~~~~~~ 126 (166)
T cd04122 73 -RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIFLIGNKADLEAQRDVT 126 (166)
T ss_pred -cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccccCcC
Confidence 5899999998886533223334555555443322 36899999999996444333
No 55
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.64 E-value=1.4e-14 Score=112.86 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=77.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
-+||+++|.+|+|||||++++++........ +..+.+.........+ ..+.+|||||... .......++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~- 74 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMITIDGKQIKLQIWDTAGQES-------FRSITRSYY- 74 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh-
Confidence 3799999999999999999999876422222 2222222222233333 4789999999631 111122233
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~ 174 (243)
..+|++++|++++.....+....|+..+.+.... ..|+++|+||.|+......+.
T Consensus 75 -~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pvivv~nK~Dl~~~~~~~~ 129 (168)
T cd01866 75 -RGAAGALLVYDITRRETFNHLTSWLEDARQHSNS--NMTIMLIGNKCDLESRREVSY 129 (168)
T ss_pred -ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccccccCCCH
Confidence 4899999998876433223344566655554322 369999999999864433333
No 56
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.64 E-value=1e-14 Score=112.54 Aligned_cols=121 Identities=17% Similarity=0.120 Sum_probs=75.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee----CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR----AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
+||+++|.+|+|||||++++++.... ....++.+.+........ ....+.+|||||..+. ......++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~ 72 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFT-KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF-------DAITKAYY 72 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH-------HHhHHHHh
Confidence 48999999999999999999987532 111122222211122222 2457999999997321 11122233
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
.++|++++|++++.....+....|+..+..... ..|+++|+||+|+......+
T Consensus 73 --~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~v~ 125 (162)
T cd04106 73 --RGAQACILVFSTTDRESFEAIESWKEKVEAECG---DIPMVLVQTKIDLLDQAVIT 125 (162)
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhcccccCCC
Confidence 589999999888654322334455655554332 36999999999986443433
No 57
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.64 E-value=1.4e-14 Score=112.36 Aligned_cols=123 Identities=21% Similarity=0.191 Sum_probs=76.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+||+++|.+|+|||||++++++... .....++.+...........+ ..+.+|||||.... ......++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~- 72 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF-------RTITSSYY- 72 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhH-------HHHHHHHh-
Confidence 37999999999999999999998763 222223333222223334444 46899999997321 11112222
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
..+|++++|++++.......-..++..+...... ..|+++|+||+|+.......
T Consensus 73 -~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~ 126 (166)
T cd01869 73 -RGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTDKRVVD 126 (166)
T ss_pred -CcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEEChhcccccCCC
Confidence 5899999998876432222234455555544322 36999999999986443333
No 58
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.64 E-value=9.2e-15 Score=113.20 Aligned_cols=118 Identities=18% Similarity=0.164 Sum_probs=74.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
++||+++|.+|+|||||+++++.... ....++++...........+ ..+.+|||||........ ..++
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~- 70 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMR-------DLYM- 70 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHH-------HHHH-
Confidence 47999999999999999999986542 22222333222223334444 357799999985332111 1112
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
.++|++++|++++.....+...+++..+..... ....|+++|+||+|+..
T Consensus 71 -~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 71 -KNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED 120 (164)
T ss_pred -hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchh
Confidence 488999999887653322334456666554322 12369999999999864
No 59
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.64 E-value=6.2e-15 Score=126.59 Aligned_cols=125 Identities=18% Similarity=0.188 Sum_probs=84.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~ 118 (243)
..|+++|.+|||||||+|+|++... .++.++.+|..+......+.+ ..+.+|||||+.+...........+.+.+ .
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi--e 234 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI--E 234 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH--H
Confidence 5899999999999999999998764 466777778777777777766 89999999999754432211111122222 3
Q ss_pred CCcEEEEEEeCCCc---ccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 119 TIDVLLYVDRLDVY---RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 119 ~~~~il~v~~~d~~---~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++++++|++++.. ...+....+.+.+......-..+|+++|+||+|+.
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~ 286 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLL 286 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCC
Confidence 78999999777542 11122233444444332212347999999999985
No 60
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=1.2e-14 Score=115.80 Aligned_cols=120 Identities=15% Similarity=0.126 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|.+|+|||||++.+.+.........++.+..........++ ..+.||||||.... ......++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~-- 71 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERF-------RSVTHAYY-- 71 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHH-------HHhhHHHc--
Confidence 58999999999999999999987632112222222222222233444 47899999996321 11112222
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~ 170 (243)
.++|++++|++++.....+....++..+.+.... ..|+++|+||+|+...+
T Consensus 72 ~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~~~ 122 (191)
T cd04112 72 RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQE--DVVIMLLGNKADMSGER 122 (191)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccchhcc
Confidence 4899999998886533223345566666665433 36999999999985333
No 61
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.64 E-value=1.1e-14 Score=118.13 Aligned_cols=123 Identities=17% Similarity=0.188 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
+||+++|.+|+|||||+|.+++... .....++.+.+......... ...+.+|||||..... .....++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~-------~l~~~~~- 71 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGF-GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG-------KMLDKYI- 71 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH-------HHHHHHh-
Confidence 5899999999999999999998763 22222332323323333333 3578999999973221 1122222
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc-cccccEEEEEeCCCCCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSLPDRL 172 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~-~~~~~~ivV~tk~D~~~~~~~ 172 (243)
.++|++++|++++.....+....|+..+.+.... ....|+++|+||+|+...+..
T Consensus 72 -~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v 127 (215)
T cd04109 72 -YGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV 127 (215)
T ss_pred -hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccccc
Confidence 4899999998886543223345577777766542 222479999999999644433
No 62
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.64 E-value=1.4e-14 Score=111.73 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|.+|+|||||++.+++..... ...+..+..........++ ..+.+|||||.... ......++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-------~~~~~~~~-- 70 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKE-DSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF-------RSVTRSYY-- 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCEEEEEEEEECcchHHH-------HHhHHHHh--
Confidence 589999999999999999999876322 1122222222222233334 47899999998421 11122222
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
..+|++++|++++..........++..++..... ..|+++|+||+|+.+.
T Consensus 71 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~ 120 (161)
T cd04113 71 RGAAGALLVYDITNRTSFEALPTWLSDARALASP--NIVVILVGNKSDLADQ 120 (161)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhcchh
Confidence 4899999998886543223334565555554433 3699999999998643
No 63
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.64 E-value=9.1e-15 Score=116.28 Aligned_cols=124 Identities=14% Similarity=0.115 Sum_probs=81.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..+||+++|..|+|||||+.++.+... .....+..+..........++ ..+.+|||||..... .....++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~-------~l~~~~~ 76 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST-ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFC-------TIFRSYS 76 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHh
Confidence 468999999999999999999997642 111112222222223344455 578899999984321 1112222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~ 174 (243)
.++|++|+|++++.....+....|++.+.+... ..|+++|+||.|+...+..+.
T Consensus 77 --~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~---~~piilVGNK~DL~~~~~v~~ 130 (189)
T cd04121 77 --RGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP---GVPKILVGNRLHLAFKRQVAT 130 (189)
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccchhccCCCH
Confidence 599999999998764433444678888866543 369999999999964444443
No 64
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.64 E-value=1.7e-14 Score=113.38 Aligned_cols=125 Identities=15% Similarity=0.079 Sum_probs=76.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee------------CCeEEEEEeCCCCCCCCCCcH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------------AGFTLNIVDTPGLIEGGYVNY 105 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~------------~~~~~~viDTPG~~~~~~~~~ 105 (243)
..+||+++|.+|+|||||++++.+... .....++.+.+.......+ ....+.+|||||...
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------ 75 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKF-NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER------ 75 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHH------
Confidence 358999999999999999999997753 2222222222221111211 235799999999631
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113 106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 106 ~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
.......++ .++|++++|++++..........|+..+..... ....|+++|+||+|+.+.+..+
T Consensus 76 -~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~v~ 139 (180)
T cd04127 76 -FRSLTTAFF--RDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQRQVS 139 (180)
T ss_pred -HHHHHHHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhcCccC
Confidence 111222222 589999999888653322333456666554322 1135899999999986443333
No 65
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.64 E-value=1.1e-14 Score=112.52 Aligned_cols=118 Identities=19% Similarity=0.136 Sum_probs=75.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
++||+++|.+|+|||||++.+++..... ...++...........++. .+.+|||||......... ..+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~---~~~----- 70 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRD---LYI----- 70 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHH---HHH-----
Confidence 3799999999999999999999776322 2222222222233444554 578899999854332211 122
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
.++|++++|++++.....+....++..+..... ....|+++|+||+|+.+
T Consensus 71 -~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 71 -KNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLES 120 (163)
T ss_pred -hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence 489999999888654322334556666665432 12379999999999853
No 66
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.63 E-value=1.1e-14 Score=112.34 Aligned_cols=118 Identities=16% Similarity=0.135 Sum_probs=75.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+||+++|++|+|||||+|++++..... ...+..+.........++ +..+.+|||||.... ......++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~- 71 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSE-NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERY-------RSLAPMYY- 71 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHH-------HHHHHHHh-
Confidence 3799999999999999999999887432 122222211222223333 357899999997321 11111122
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
.++|++++|++++.....+....++..+...... ..|+++|+||+|+.+
T Consensus 72 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~ 120 (163)
T cd01860 72 -RGAAAAIVVYDITSEESFEKAKSWVKELQRNASP--NIIIALVGNKADLES 120 (163)
T ss_pred -ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 4789999998876433233445666666665432 368999999999863
No 67
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.63 E-value=1.9e-14 Score=111.11 Aligned_cols=122 Identities=17% Similarity=0.147 Sum_probs=76.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|++|+|||||++++++... .....+..+...........+ ..+.+|||||... .......++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~-- 70 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER-------FRSITSSYY-- 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHh--
Confidence 5899999999999999999998864 222222223222333344555 4788999999631 111222223
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
.++|++++|+++......+....|+..+...... ..|+++|+||+|+......+
T Consensus 71 ~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~--~~pivvv~nK~D~~~~~~~~ 124 (164)
T smart00175 71 RGAVGALLVYDITNRESFENLKNWLKELREYADP--NVVIMLVGNKSDLEDQRQVS 124 (164)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhcccccCCC
Confidence 5899999998875432222233455555554322 36999999999986433333
No 68
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=5.6e-15 Score=115.79 Aligned_cols=127 Identities=16% Similarity=0.164 Sum_probs=91.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
.-++|+++|.+|+|||+++-.+..... ......+...+........+|. .+++|||+|+..... .++.|+
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f-~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~t-------i~~sYy 82 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSF-NTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRT-------ITTAYY 82 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccC-cCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHH-------HHHHHH
Confidence 458999999999999999999887653 2222222233333444455554 799999999953321 223333
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~ 176 (243)
++++++++|+++.+....+....|++.+.+..... .+.++|+||+|+..++.++.+.
T Consensus 83 --rgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~--v~~~LvGNK~D~~~~R~V~~e~ 139 (207)
T KOG0078|consen 83 --RGAMGILLVYDITNEKSFENIRNWIKNIDEHASDD--VVKILVGNKCDLEEKRQVSKER 139 (207)
T ss_pred --hhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCC--CcEEEeeccccccccccccHHH
Confidence 49999999999976665566777999999987764 5999999999997666665543
No 69
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.63 E-value=1e-14 Score=114.28 Aligned_cols=124 Identities=15% Similarity=0.122 Sum_probs=77.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+||+++|..|+|||||++.+.+.... ....++...........++ ..+.+|||||..+... ....++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------l~~~~~- 71 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTA-------MRDQYM- 71 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHH-------HhHHHh-
Confidence 479999999999999999999977632 1122222122222344455 4688999999853221 111222
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~ 174 (243)
.++|++++|++++.....+....+...+.+... ....|+++|+||+|+......+.
T Consensus 72 -~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~~~v~~ 127 (172)
T cd04141 72 -RCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQRQVTT 127 (172)
T ss_pred -hcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhcCccCH
Confidence 488999999988754322333445555655422 12369999999999864433333
No 70
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.63 E-value=8.6e-15 Score=113.55 Aligned_cols=119 Identities=19% Similarity=0.170 Sum_probs=74.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~ 118 (243)
+|+++|.+|+|||||++++++... ...+++++..........++. .+.+|||||..... .......+ .
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~~~------~ 70 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD--TEQLERSI------R 70 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCcccc--cchHHHHH------H
Confidence 589999999999999999987552 222222222222223344444 68899999986421 11122233 3
Q ss_pred CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
.+|++++|++++.....+....++..+..........|+++|+||+|+...
T Consensus 71 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 121 (165)
T cd04146 71 WADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY 121 (165)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh
Confidence 889999998886543223345566666654321223799999999998533
No 71
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.2e-15 Score=119.27 Aligned_cols=144 Identities=15% Similarity=0.092 Sum_probs=101.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
.-+||+++|.+|+|||-|+..++.... .....++.+.+..+....++++ +.+||||+|+...+..... +.
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF-~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSa---YY---- 84 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEF-SLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSA---YY---- 84 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhccccc-CcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccch---hh----
Confidence 348999999999999999999887663 3333344444555555566665 7899999999644322211 22
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHhhhHHHHHHHcccc
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPST 193 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 193 (243)
+++.+.|+|+++......+.-.+||+.++.+...+ .++++|+||+||...+.++.++-..-..+...-+++.++
T Consensus 85 --rgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~n--ivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSA 158 (222)
T KOG0087|consen 85 --RGAVGALLVYDITRRQTFENVERWLKELRDHADSN--IVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSA 158 (222)
T ss_pred --cccceeEEEEechhHHHHHHHHHHHHHHHhcCCCC--eEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecc
Confidence 59999999999976444567788999999988665 489999999999876666666544333333344555543
No 72
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.63 E-value=1e-14 Score=130.30 Aligned_cols=124 Identities=24% Similarity=0.353 Sum_probs=89.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH--HHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA--IQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~--~~~~~~~~ 115 (243)
.+++|+++|.+|+|||||+|+|++.....++..+++|...........+..+.+|||||+.+........ ....+...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 5699999999999999999999998866677777777776666666788899999999997654443211 11111111
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
....+|++|+|+++.. ..+..+..++..+.+. .+|+++|+||+|+.
T Consensus 252 ~~~~ad~~ilViD~~~-~~~~~~~~i~~~~~~~-----~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 252 AIERADVVLLVIDATE-GITEQDLRIAGLALEA-----GRALVIVVNKWDLV 297 (435)
T ss_pred HHHHCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCcEEEEEECccCC
Confidence 2258899999977754 3556666655554432 26999999999986
No 73
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.63 E-value=1.3e-14 Score=112.16 Aligned_cols=117 Identities=20% Similarity=0.187 Sum_probs=73.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|.+|+|||||+|++++.... ....++...........++ ..+.+|||||..+... .. ..++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~---~~----~~~~-- 69 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSA---MR----DQYM-- 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCcccchH---HH----HHHH--
Confidence 48999999999999999999987632 2222222222223333444 4788999999854321 11 1122
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
..+|++++|++++.....+....+...+...... ...|+++|+||+|+.+
T Consensus 70 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 70 RTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLES 119 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 3789999998876532222334445555544332 2369999999999864
No 74
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.62 E-value=1.3e-14 Score=115.35 Aligned_cols=122 Identities=17% Similarity=0.176 Sum_probs=75.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~ 118 (243)
||+++|.+|+|||||++++++... ....+++...........++. .+.+|||||..+... ....++ .
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~--~ 69 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTA-------LRDQWI--R 69 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHH-------HHHHHH--H
Confidence 589999999999999999997653 222222222222223334454 588999999743221 111122 4
Q ss_pred CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc-cccccEEEEEeCCCCCCCCCCC
Q 026113 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~-~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
++|++|+|++++.....+....++..+...... ....|+++|+||+|+...+..+
T Consensus 70 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~ 125 (190)
T cd04144 70 EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVS 125 (190)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccC
Confidence 899999998886533223345566666554321 1346999999999986433333
No 75
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.62 E-value=1.3e-14 Score=111.52 Aligned_cols=116 Identities=20% Similarity=0.194 Sum_probs=72.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|.+|+|||||+|++++... .....++...........++. .+.+|||||...... ....++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------l~~~~~-- 70 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYM-- 70 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHH-------HHHHHH--
Confidence 6899999999999999999998763 222222222222223344443 578899999843211 112222
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++.....+....+...+.+.... ...|+++|+||+|+.
T Consensus 71 ~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piivv~nK~Dl~ 119 (162)
T cd04138 71 RTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDS-DDVPMVLVGNKCDLA 119 (162)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccc
Confidence 3789999998886533222333455555544322 236999999999985
No 76
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=5.1e-15 Score=128.72 Aligned_cols=133 Identities=22% Similarity=0.268 Sum_probs=96.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
.+.+++|+++|++|+|||||+|+|...+...+++.+++|.+......+.+|.++.++||+|+-+.....-+.....+..-
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 34779999999999999999999999999999999999999999899999999999999999762222223332222222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHH-hcccc------cccEEEEEeCCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDN-FGEQI------WKRALIVLTHAQLSLP 169 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~-~~~~~------~~~~ivV~tk~D~~~~ 169 (243)
....+|++++|+++... .+..+....+.+... -|-.+ ..+++++.||.|+..+
T Consensus 345 ~~~~advi~~vvda~~~-~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 345 RIERADVILLVVDAEES-DTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHhhcCEEEEEeccccc-ccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 33589999999777443 334444433333322 11112 2689999999998754
No 77
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=2.1e-14 Score=115.20 Aligned_cols=124 Identities=15% Similarity=0.077 Sum_probs=76.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
+||+++|.+|+|||||++.+++... .....++.+.+......... ...+.+|||||...... ....++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~-~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~-------~~~~~~- 71 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIF-SQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGG-------MTRVYY- 71 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhh-------hHHHHh-
Confidence 5899999999999999999998753 22222222222222223333 34789999999843211 112222
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc--ccccccEEEEEeCCCCCCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
.++|++++|++++.....+....|+..+..... .....|+++|+||+|+.+.+..+
T Consensus 72 -~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~ 129 (201)
T cd04107 72 -RGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKD 129 (201)
T ss_pred -CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccC
Confidence 589999999888653322333455555554322 12346999999999996433333
No 78
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.62 E-value=1.6e-14 Score=115.17 Aligned_cols=189 Identities=17% Similarity=0.206 Sum_probs=116.0
Q ss_pred HhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC-------CCCC-eeEEEEeeeCCe--EEEEEeCCCCCC
Q 026113 30 GKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGP-RPVMVSRSRAGF--TLNIVDTPGLIE 99 (243)
Q Consensus 30 ~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~-------~~t~-~~~~~~~~~~~~--~~~viDTPG~~~ 99 (243)
++..+.+ -.++|++||.+|.||||++|.++...+...+..+ .++. ....+....+|. ++.++|||||+|
T Consensus 38 ~k~mk~G-F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 38 KKTMKTG-FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred HHHHhcc-CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence 3344443 5799999999999999999999977654422211 1111 112233344554 789999999997
Q ss_pred CCCCc-----------HHHHHHHHHHH--------hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEE
Q 026113 100 GGYVN-----------YHAIQLIKRFL--------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV 160 (243)
Q Consensus 100 ~~~~~-----------~~~~~~~~~~~--------~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV 160 (243)
.-..+ ++...++++-+ .+...|++||+++.+...+...|..+++.+.+. .+++-|
T Consensus 117 qInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v------vNvvPV 190 (336)
T KOG1547|consen 117 QINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV------VNVVPV 190 (336)
T ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh------heeeee
Confidence 53222 12222222222 135689999999888777888899999888887 699999
Q ss_pred EeCCCCCCCCCCCHHHHHHhhhHHHHHHHccccC-Ccc--cccc----------CCCccchhhhcCCCCCCCcCcccccc
Q 026113 161 LTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTW-MKK--KDIQ----------GSFVPVVLVENSGRCAKNENDEKVSQ 227 (243)
Q Consensus 161 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~--~~~~----------~~~i~~~~~~~~~~~~~~~~~~~~~~ 227 (243)
+-|+|-. ..++....+..--+++...+.. |.. ++.. +..||+.++.......-|+ +.+
T Consensus 191 IakaDtl-----TleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR~~iPFAVVGsd~e~~vnG--~~v-- 261 (336)
T KOG1547|consen 191 IAKADTL-----TLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVRESIPFAVVGSDKEIQVNG--RRV-- 261 (336)
T ss_pred Eeecccc-----cHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHHhhCCeEEecccceEEEcC--eEe--
Confidence 9999865 3443333323333344444433 221 1110 2578888886655444443 345
Q ss_pred CCCCCcc
Q 026113 228 LPDNRIQ 234 (243)
Q Consensus 228 lp~~~~w 234 (243)
|.....|
T Consensus 262 lGRktrW 268 (336)
T KOG1547|consen 262 LGRKTRW 268 (336)
T ss_pred ecccccc
Confidence 7777888
No 79
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.62 E-value=1.6e-14 Score=111.80 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
++|+++|.+|+|||||++.+++... .....+..+...........+ ..+.+|||||...... ....++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-------~~~~~~-- 70 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEF-HSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT-------ITKQYY-- 70 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh-------hHHHHh--
Confidence 5899999999999999999997763 222222222222223334444 4688999999743211 112222
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
..+|++++|++++.....+....|++.+...... ..|+++|+||.|+...+...
T Consensus 71 ~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~~~v~ 124 (161)
T cd04117 71 RRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPE--GVQKILIGNKADEEQKRQVG 124 (161)
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccccCCC
Confidence 4899999999987644334445666666654332 36999999999986444333
No 80
>PRK11058 GTPase HflX; Provisional
Probab=99.62 E-value=1.1e-14 Score=129.06 Aligned_cols=123 Identities=18% Similarity=0.176 Sum_probs=81.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHHH-hc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFL-LN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~viDTPG~~~~~~~~~~~~~~~~~~~-~~ 117 (243)
.+|+++|.+|+|||||+|+|++.+.+ +.+.+.+|.++......+.+. ++.+|||||+... ......+.+...+ ..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~tl~~~ 274 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKATLQET 274 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHHHHHh
Confidence 58999999999999999999998864 556666677766656655554 8999999999532 1222222222222 23
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+|++|+|++.+.....+....+...+...... ..|+++|+||+|+.
T Consensus 275 ~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~--~~pvIiV~NKiDL~ 322 (426)
T PRK11058 275 RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAH--EIPTLLVMNKIDML 322 (426)
T ss_pred hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccC--CCCEEEEEEcccCC
Confidence 5899999997775432222222233334433222 36999999999985
No 81
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.62 E-value=3.1e-14 Score=114.09 Aligned_cols=121 Identities=17% Similarity=0.110 Sum_probs=75.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||++++++.... ....++.+...........+ ..+.+|||||..... . ....++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~---~----~~~~~~ 76 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFR---T----ITSTYY 76 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHH---H----HHHHHh
Confidence 4689999999999999999999987632 22222222222222333344 468899999974321 1 111222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~ 171 (243)
.++|++++|+++......+....++..+....+ ..|+++|+||+|+.+...
T Consensus 77 --~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~piivVgNK~Dl~~~~~ 127 (199)
T cd04110 77 --RGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD---DVCKVLVGNKNDDPERKV 127 (199)
T ss_pred --CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccccc
Confidence 478999999887543322333456666555432 268999999999864333
No 82
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=9.7e-15 Score=128.70 Aligned_cols=124 Identities=17% Similarity=0.208 Sum_probs=84.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~ 119 (243)
.|+++|.+|||||||+|+|++... .++.++.+|..+......+. +..+.++||||+.+...........+.+.+ ..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi--er 236 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI--ER 236 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH--hh
Confidence 899999999999999999998874 45677777777776666666 789999999999754332211111111111 37
Q ss_pred CcEEEEEEeCCCc---ccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 120 IDVLLYVDRLDVY---RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 120 ~~~il~v~~~d~~---~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
++++++|++++.. ...+....+.+.+......-..+|.++|+||+|+.
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 8999999877532 12233344555555542222347999999999973
No 83
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.62 E-value=2.4e-14 Score=112.77 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=75.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+||+++|.+|+|||||++.+.+... .. .+.++...........++ ..+.+|||||...... ++.. .
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f-~~-~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~--------~~~~-~ 69 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCY-PE-TYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDN--------VRPL-C 69 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcC-CC-CcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhh--------cchh-h
Confidence 37999999999999999999998753 22 222221111222233444 4789999999843321 1111 1
Q ss_pred cCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..++|++|+|++++... +......|+..+.+..+ ..|+++|+||+|+.
T Consensus 70 ~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~ 118 (178)
T cd04131 70 YPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLR 118 (178)
T ss_pred cCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhh
Confidence 15899999999986543 32223567777776543 26999999999985
No 84
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.61 E-value=3.5e-14 Score=112.24 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=76.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..+||+++|.+|+|||||++.+++... . ..+.++...........++ ..+.+|||+|..... .++..
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f-~-~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~--------~~~~~- 72 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCF-P-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD--------NVRPL- 72 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-C-CccCCceeeeeEEEEEECCEEEEEEEEECCCchhhH--------hhhhh-
Confidence 468999999999999999999997753 2 2222221112222233444 479999999984321 22221
Q ss_pred hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
...++|++++|++++... +......|++.+.+..+ ..|+++|+||+|+.
T Consensus 73 ~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~ 122 (182)
T cd04172 73 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR 122 (182)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhhh
Confidence 125899999999986543 32223567777776543 36999999999985
No 85
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.61 E-value=1.9e-14 Score=111.34 Aligned_cols=115 Identities=12% Similarity=0.100 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|.+|+|||||++.+++... .....+.............++ ..+.+|||||...... ....++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~-- 70 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGY-EPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT-------MHASYY-- 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhh-------hhHHHh--
Confidence 5899999999999999999997753 211111111111122223333 4688999999843211 112222
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++.....+....|+..+.+... ..|+++|+||+|+.
T Consensus 71 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~p~ivv~nK~Dl~ 117 (161)
T cd04124 71 HKAHACILVFDVTRKITYKNLSKWYEELREYRP---EIPCIVVANKIDLD 117 (161)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEECccCc
Confidence 489999999887643222334566666665432 36999999999984
No 86
>PTZ00369 Ras-like protein; Provisional
Probab=99.61 E-value=1.8e-14 Score=114.51 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=75.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..+||+++|.+|+|||||++++++.... ....++...........++ ..+.+|||||..+..... ..++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~-------~~~~ 74 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMR-------DQYM 74 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhH-------HHHh
Confidence 4699999999999999999999987632 1222222122222223344 468899999986543221 1122
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
.++|++++|++++.....+....+...+...... ...|+++|+||+|+..
T Consensus 75 --~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 75 --RTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDS 124 (189)
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 4899999998886543223345566666554332 2369999999999853
No 87
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.61 E-value=1.1e-14 Score=114.03 Aligned_cols=125 Identities=18% Similarity=0.217 Sum_probs=76.6
Q ss_pred HHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 026113 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 107 (243)
Q Consensus 28 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~ 107 (243)
++++...+ ..+++|+++|.+|+|||||++++.+..... ..+ |..........++..+.+|||||....
T Consensus 4 ~~~~~~~~-~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~--~~~--t~g~~~~~~~~~~~~l~l~D~~G~~~~------- 71 (173)
T cd04154 4 IIRKQKLK-EREMRILILGLDNAGKTTILKKLLGEDIDT--ISP--TLGFQIKTLEYEGYKLNIWDVGGQKTL------- 71 (173)
T ss_pred hhhhhhcC-CCccEEEEECCCCCCHHHHHHHHccCCCCC--cCC--ccccceEEEEECCEEEEEEECCCCHHH-------
Confidence 34444433 357999999999999999999999875321 111 211222334456788999999998421
Q ss_pred HHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 108 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 108 ~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
......++ .++|++++|++.+..........++..+.... .....|+++|+||+|+.
T Consensus 72 ~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 72 RPYWRNYF--ESTDALIWVVDSSDRLRLDDCKRELKELLQEE-RLAGATLLILANKQDLP 128 (173)
T ss_pred HHHHHHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECcccc
Confidence 11222233 58999999988764321122223333332211 11237999999999985
No 88
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.60 E-value=2.7e-14 Score=111.62 Aligned_cols=118 Identities=19% Similarity=0.163 Sum_probs=73.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~ 118 (243)
||+++|.+|+|||||++++++... .....+..+...........+ ..+.+|||||...... ....++ .
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~--~ 71 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKC-------IASTYY--R 71 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHh-------hHHHHh--c
Confidence 799999999999999999998763 222222222222222333344 4799999999842211 111122 5
Q ss_pred CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
++|++++|++++.....+....|++.+.+..... ..|+++|+||+|+.+.
T Consensus 72 ~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 72 GAQAIIIVFDLTDVASLEHTRQWLEDALKENDPS-SVLLFLVGTKKDLSSP 121 (170)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEChhcCcc
Confidence 8999999988865322334456666654432211 1479999999998533
No 89
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.60 E-value=1.4e-14 Score=113.04 Aligned_cols=123 Identities=12% Similarity=0.102 Sum_probs=76.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.++|+++|.+|+|||||++++++... .....+..+...........+ ..+.+|||||..+.. . .....++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~---~~~~~~~- 73 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRF-PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR---K---SMVQHYY- 73 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH---H---hhHHHhh-
Confidence 47999999999999999999997653 211112222222222333444 579999999974221 0 1112222
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~ 171 (243)
.++|++++|++++.....+....|+..+...... ...|+++|+||+|+.....
T Consensus 74 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~ 126 (170)
T cd04115 74 -RNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLP-NEVPRILVGNKCDLREQIQ 126 (170)
T ss_pred -cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCC-CCCCEEEEEECccchhhcC
Confidence 5899999998886543333345566555554321 2369999999999864333
No 90
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.60 E-value=6.9e-15 Score=114.38 Aligned_cols=116 Identities=20% Similarity=0.146 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|.+|+|||||++++++.... ....+. ............ ...+.+|||||+.+....... ++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~-------~~-- 69 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP-TEYVPT-VFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPL-------SY-- 69 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCc-eeeeeEEEEEECCEEEEEEEEeCCCcccccccchh-------hc--
Confidence 58999999999999999999988741 111121 111112222233 347999999998654222211 11
Q ss_pred CCCcEEEEEEeCCCc-ccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 118 ~~~~~il~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
..+|++++|++++.. ++......++..+..... ..|+++|+||+|+.+.
T Consensus 70 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 70 PNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD 119 (171)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc
Confidence 478999999888652 244444556666655433 3799999999998643
No 91
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.60 E-value=2.8e-14 Score=111.07 Aligned_cols=121 Identities=19% Similarity=0.152 Sum_probs=76.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
++||+++|.+|+||||+++++.+... .....++...........++ ..+.+|||||..+.....+ ..+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---~~~----- 70 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRE---LYI----- 70 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhH---HHH-----
Confidence 47899999999999999999997763 22222222222222233333 5789999999864432211 112
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~ 171 (243)
.+++++++|+++++....+....+.+.+...... ...|+++|+||.|+.+.+.
T Consensus 71 -~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~~~~ 123 (168)
T cd04177 71 -KSGQGFLLVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLEDDRQ 123 (168)
T ss_pred -hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhccccCc
Confidence 3789999998886543333345566666654432 2379999999999864433
No 92
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.60 E-value=2.2e-14 Score=110.62 Aligned_cols=113 Identities=22% Similarity=0.218 Sum_probs=69.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccc--cCCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTV--STFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
.|+++|.+|+|||||+|+|++...... ...+..|.........+. +..+.+|||||+.+ ....+..++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-------~~~~~~~~~-- 72 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-------FIKNMLAGA-- 72 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-------HHHHHHhhh--
Confidence 689999999999999999998642111 112223333333334444 77899999999832 112222222
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++.. ........+..+. ..+. +|+++|+||+|+.
T Consensus 73 ~~ad~ii~V~d~~~~-~~~~~~~~~~~~~-~~~~---~~~ilv~NK~Dl~ 117 (164)
T cd04171 73 GGIDLVLLVVAADEG-IMPQTREHLEILE-LLGI---KRGLVVLTKADLV 117 (164)
T ss_pred hcCCEEEEEEECCCC-ccHhHHHHHHHHH-HhCC---CcEEEEEECcccc
Confidence 489999999887542 2222333333332 2221 4899999999985
No 93
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.60 E-value=1.3e-14 Score=113.95 Aligned_cols=114 Identities=23% Similarity=0.224 Sum_probs=73.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|.+|+|||||++.+.+... ...+.++...........++ ..+.+|||||..+...... .++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~~-- 70 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRP-------LSY-- 70 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhh-------hhc--
Confidence 6899999999999999999997663 22222222121222234455 4688999999964322111 111
Q ss_pred CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++... +......|+..+....+ ..|+++|+||+|+.
T Consensus 71 ~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~ 118 (175)
T cd01874 71 PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP---KTPFLLVGTQIDLR 118 (175)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhh
Confidence 4899999998886533 32323346666655432 36999999999985
No 94
>PLN03118 Rab family protein; Provisional
Probab=99.60 E-value=3.1e-14 Score=115.17 Aligned_cols=123 Identities=18% Similarity=0.185 Sum_probs=74.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..+||+++|.+|+|||||++++++.... ...+..+..........++ ..+.+|||||....... . ..++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~---~----~~~~ 83 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE--DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTL---T----SSYY 83 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC--CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHH---H----HHHH
Confidence 4689999999999999999999987642 1122222222222333444 47899999998533211 1 1222
Q ss_pred hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 172 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~ 172 (243)
.++|++++|++++... +......|...+... ......|+++|+||+|+......
T Consensus 84 --~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~-~~~~~~~~ilv~NK~Dl~~~~~i 138 (211)
T PLN03118 84 --RNAQGIILVYDVTRRETFTNLSDVWGKEVELY-STNQDCVKMLVGNKVDRESERDV 138 (211)
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECccccccCcc
Confidence 4889999998876432 222222233333322 22223589999999998644333
No 95
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.60 E-value=7e-14 Score=107.49 Aligned_cols=117 Identities=19% Similarity=0.150 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|.+|+|||||+|++++..... ...+..+...........+ ..+.+|||||...... ....++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~-- 70 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA-------LGPIYY-- 70 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH-------hhHHHh--
Confidence 589999999999999999999876432 2222222222222233333 3689999999632211 111122
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
..+|++++|+++++....+....+++.+.+.... ..|+++|+||+|+..
T Consensus 71 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~ 119 (162)
T cd04123 71 RDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLER 119 (162)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 4799999998876543223334556666655443 369999999999863
No 96
>PLN03110 Rab GTPase; Provisional
Probab=99.60 E-value=5.4e-14 Score=114.20 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=79.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..+||+++|.+|+|||||++.+++.... ....++.+...........+ ..+.+|||||... .......++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~-~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~ 82 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-------YRAITSAYY 82 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh
Confidence 4589999999999999999999987642 22222222222233334444 4799999999732 111222222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 172 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~ 172 (243)
.+++++++|++++.....+....|+..+...... ..|+++|+||+|+......
T Consensus 83 --~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~~~~ 135 (216)
T PLN03110 83 --RGAVGALLVYDITKRQTFDNVQRWLRELRDHADS--NIVIMMAGNKSDLNHLRSV 135 (216)
T ss_pred --CCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCC--CCeEEEEEEChhcccccCC
Confidence 5899999998886543333445666666665433 3699999999998544333
No 97
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.60 E-value=3.7e-14 Score=108.21 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|.+|+|||||+|.+++...... ..+..+.......... ....+.+|||||... .......++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~-- 70 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-------FRSITPSYY-- 70 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChHH-------HHHHHHHHh--
Confidence 5899999999999999999998875332 1122222222222233 346789999999832 111222223
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++.....+....++..+...... ..|+++|+||+|+.
T Consensus 71 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~ 118 (159)
T cd00154 71 RGAHGAILVYDITNRESFENLDKWLKELKEYAPE--NIPIILVGNKIDLE 118 (159)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEccccc
Confidence 4799999998876432222334455555554322 36999999999985
No 98
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.60 E-value=6e-14 Score=114.80 Aligned_cols=116 Identities=15% Similarity=0.117 Sum_probs=76.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..+||+++|..|+|||||++.+++... .....|+... ........++ ..+.||||||.... +.+...
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y~pTi~~-~~~~~i~~~~~~v~l~iwDTaG~e~~--------~~~~~~- 80 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFE-NYTAGLETEEQRVELSLWDTSGSPYY--------DNVRPL- 80 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCC-CCCcCCceee-eeEEEEEECCEEEEEEEEeCCCchhh--------HHHHHH-
Confidence 568999999999999999999997753 2222222221 1222233344 47999999998432 122211
Q ss_pred hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
...++|++++|++++... +......|+..+.+..+ ..|+++|+||+|+.
T Consensus 81 ~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~ 130 (232)
T cd04174 81 CYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDLR 130 (232)
T ss_pred HcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccc
Confidence 115999999999986543 32223567777776543 26999999999985
No 99
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.59 E-value=6.4e-14 Score=111.15 Aligned_cols=119 Identities=20% Similarity=0.133 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|.+|+|||||++++++.... ....++.+.+........++ ..+.+|||||...... ....++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~-------~~~~~~-- 70 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFS-ESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRS-------LNNSYY-- 70 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHh-------hHHHHc--
Confidence 58999999999999999999987642 11122222222222333444 4678999999742211 111122
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~ 170 (243)
.++|++++|++++..........|+..+....+.. .|+++|+||+|+.+..
T Consensus 71 ~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~~ 121 (188)
T cd04125 71 RGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNNK 121 (188)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCcccc
Confidence 58999999988865332233344666666554332 6899999999986433
No 100
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.59 E-value=4.5e-14 Score=111.02 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=76.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|.+|+|||||+..+..... .....++.. .........++ ..+.+|||+|.......... .+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f-~~~~~~Ti~-~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~---~~------ 70 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVF-DNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPL---SY------ 70 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-CCCCCCcce-eeeEEEEEECCEEEEEEEEECCCCccccccchh---hc------
Confidence 5899999999999999999997663 222222221 22222233444 47899999998654333221 22
Q ss_pred CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
.++|++|+|++++... +......|+..+.+..+ ..|+++|+||+|+.+
T Consensus 71 ~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~~ 119 (176)
T cd04133 71 RGADVFVLAFSLISRASYENVLKKWVPELRHYAP---NVPIVLVGTKLDLRD 119 (176)
T ss_pred CCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeChhhcc
Confidence 4899999999987543 33333567777765432 369999999999964
No 101
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.59 E-value=2.2e-14 Score=135.00 Aligned_cols=120 Identities=20% Similarity=0.261 Sum_probs=90.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHHHhcC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLLNK 118 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~-~~~~~~~~~~~~~~~~ 118 (243)
.+|+++|.+|+|||||+|+|++.....+...++.|.+.......+.+..+.+|||||+..... ......+....++ .
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~ 353 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV--S 353 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH--H
Confidence 689999999999999999999988767777788887777777788899999999999864321 1122222222233 5
Q ss_pred CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.+|++|+|++... .++..+..+.+.++.. .+|+++|+||+|+.
T Consensus 354 ~aD~iL~VvDa~~-~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~ 396 (712)
T PRK09518 354 LADAVVFVVDGQV-GLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQ 396 (712)
T ss_pred hCCEEEEEEECCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence 8999999977653 3566676777666542 37999999999985
No 102
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.59 E-value=6.7e-14 Score=112.27 Aligned_cols=120 Identities=16% Similarity=0.122 Sum_probs=76.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-------CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-------AGFTLNIVDTPGLIEGGYVNYHAIQLIK 112 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~-------~~~~~~viDTPG~~~~~~~~~~~~~~~~ 112 (243)
+||+++|.+|+|||||++.+.+... .....++.+.........+ ....+.+|||+|.... ..++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f-~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~--------~~l~ 71 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQV-LGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV--------KSTR 71 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH--------HHHH
Confidence 5899999999999999999998763 2222222221111111222 1247899999999432 1222
Q ss_pred HHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc-----------------ccccccEEEEEeCCCCCCC
Q 026113 113 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG-----------------EQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 113 ~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~-----------------~~~~~~~ivV~tk~D~~~~ 169 (243)
..+ ..++|++|+|++++.....+....|+..+....+ .....|+++|+||+|+.+.
T Consensus 72 ~~~-yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 72 AVF-YNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred HHH-hCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 211 1589999999998764433445577777765321 1123699999999998644
No 103
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.59 E-value=4.9e-14 Score=109.69 Aligned_cols=122 Identities=17% Similarity=0.111 Sum_probs=73.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|.+|+|||||+|++++.... ....++.+.........+.+. .+.+|||||..... .....++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~-- 70 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ-------SLGVAFY-- 70 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH-------hHHHHHh--
Confidence 58999999999999999999988642 222222222222223344443 56799999974221 1112222
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc--cccccEEEEEeCCCCCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLSLPDR 171 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~~~~~ 171 (243)
.++|++|+|++++.....+....+...+...+.. ....|+++|+||+|+.+++.
T Consensus 71 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 126 (172)
T cd01862 71 RGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ 126 (172)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccc
Confidence 5899999998876432112223444444443321 11369999999999974333
No 104
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.59 E-value=2.2e-14 Score=111.54 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|.+|+|||||+|++.+.... ...+... ......... .+..+.+|||||..+.. .. +..++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~----~~~~~-- 68 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVL-PEITIPADVTPERVPTTIVDTSSRPQDR---AN----LAAEI-- 68 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcc-cceEeeeeecCCeEEEEEEeCCCchhhh---HH----Hhhhc--
Confidence 48999999999999999999987632 2222221 111121222 44578999999985321 11 12222
Q ss_pred CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
..+|++++|++++... +......|+..+..... ..|+++|+||+|+.+.
T Consensus 69 ~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~pviiv~nK~Dl~~~ 118 (166)
T cd01893 69 RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV---KVPIILVGNKSDLRDG 118 (166)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhcccc
Confidence 4899999998876432 22222346666665432 3699999999999643
No 105
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.59 E-value=8.6e-14 Score=107.60 Aligned_cols=118 Identities=14% Similarity=0.116 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~-~~~~~~~~~~t~~~~~~~~~~---~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
+||+++|.+|+|||||++++.+.. .+.....++............ ....+.+|||||... .......++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~ 73 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-------YSDMVSNYW 73 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-------HHHHHHHHh
Confidence 589999999999999999998642 222222222222222222222 336899999999721 111222233
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
..+|++++|++++.....+....|++.+.... ...|+++|+||+|+.+.
T Consensus 74 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~ 122 (164)
T cd04101 74 --ESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADK 122 (164)
T ss_pred --CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc
Confidence 58999999988864322223345555555442 23699999999998643
No 106
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.59 E-value=7.3e-14 Score=110.59 Aligned_cols=117 Identities=13% Similarity=0.120 Sum_probs=74.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+..+|+++|.+|+||||++|.+.+...... .+ |...........+.++.+|||||.... ......++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~- 82 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH--QP--TQHPTSEELAIGNIKFTTFDLGGHQQA-------RRLWKDYF- 82 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc--CC--ccccceEEEEECCEEEEEEECCCCHHH-------HHHHHHHh-
Confidence 3579999999999999999999998764322 11 223334445567889999999998421 11222333
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++.............+..+.+... ....|+++|+||+|+.
T Consensus 83 -~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~ 131 (184)
T smart00178 83 -PEVNGIVYLVDAYDKERFAESKRELDALLSDEE-LATVPFLILGNKIDAP 131 (184)
T ss_pred -CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCcccc
Confidence 589999999776432111112222322222111 1236999999999984
No 107
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.59 E-value=3.3e-14 Score=133.88 Aligned_cols=124 Identities=16% Similarity=0.182 Sum_probs=89.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN--YHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~--~~~~~~~~~~~ 115 (243)
...+|+++|.+|+|||||+|+|++.....++..+++|.+.......+++.++.+|||||+....... .+....++...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 3589999999999999999999999865667777788777666677888899999999986432221 12233332222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
....+|++++|++... ..+..+..++..+... .+|+++|+||+|+.
T Consensus 529 ~i~~advvilViDat~-~~s~~~~~i~~~~~~~-----~~piIiV~NK~DL~ 574 (712)
T PRK09518 529 AIERSELALFLFDASQ-PISEQDLKVMSMAVDA-----GRALVLVFNKWDLM 574 (712)
T ss_pred HhhcCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEEchhcC
Confidence 2258999999977754 3555555555544331 36999999999986
No 108
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.59 E-value=6.2e-14 Score=115.98 Aligned_cols=125 Identities=21% Similarity=0.234 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|..|+|||||++.+++... . ..+.++..+........++ ..+.+|||||..+.. .++.. ..
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f-~-~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~--------~~~~~-~~ 69 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRF-E-EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFP--------AMRRL-SI 69 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCC-C-CCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhh--------HHHHH-Hh
Confidence 4899999999999999999997653 2 2222222222233334455 478899999985321 12221 11
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc-------ccccccEEEEEeCCCCCCCCCCCHH
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG-------EQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~-------~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
..+|++|+|++++.....+....+++.+..... .....|+++|+||+|+...+....+
T Consensus 70 ~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ 134 (247)
T cd04143 70 LTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRD 134 (247)
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHH
Confidence 488999999998764322334556666654311 1234799999999998643444443
No 109
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.59 E-value=3.2e-14 Score=112.50 Aligned_cols=118 Identities=19% Similarity=0.191 Sum_probs=72.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee---eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS---RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
+.++|+++|.+|+|||||++++++.... ...++.+......... ..+..+.+|||||.... . .....+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---~----~~~~~~ 72 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL---R----PLWKSY 72 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCcHhH---H----HHHHHH
Confidence 4689999999999999999999877632 2233222222222222 24578999999997321 1 111222
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+ .++|++++|++.+.....+....++..+.+.... ...|+++|+||+|+.
T Consensus 73 ~--~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~NK~D~~ 122 (183)
T cd04152 73 T--RCTDGIVFVVDSVDVERMEEAKTELHKITRFSEN-QGVPVLVLANKQDLP 122 (183)
T ss_pred h--ccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhc-CCCcEEEEEECcCcc
Confidence 2 4899999997765432112223344444433222 237999999999984
No 110
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.58 E-value=3.8e-14 Score=126.62 Aligned_cols=127 Identities=17% Similarity=0.178 Sum_probs=84.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
.-..|+|||.+|||||||+|+|++... .+++++.+|..+........+.++.++||||+.+........-..+.+++
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhi-- 234 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHI-- 234 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHH--
Confidence 346899999999999999999998874 46777888888877777788889999999999754322221111111122
Q ss_pred CCCcEEEEEEeCCCc---c-cChhHHHHHHHHHHHhc---------ccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVY---R-VDNLDKQITRAITDNFG---------EQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~---~-~~~~~~~~l~~l~~~~~---------~~~~~~~ivV~tk~D~~ 167 (243)
..++++++|+++... + ..+....+.+.|..... .-..+|+++|+||+|+.
T Consensus 235 eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~ 297 (500)
T PRK12296 235 ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP 297 (500)
T ss_pred HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence 478999999766421 1 11112222333333221 11247999999999985
No 111
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.58 E-value=4.7e-14 Score=112.36 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=74.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..+||+++|..|+|||||++.+..... .....++.. .........++ ..+.+|||||..... .++...
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~e~~~--------~l~~~~ 71 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAF-PKEYIPTVF-DNYSAQTAVDGRTVSLNLWDTAGQEEYD--------RLRTLS 71 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCC-CcCCCCceE-eeeEEEEEECCEEEEEEEEECCCchhhh--------hhhhhh
Confidence 358999999999999999999997653 222222211 11111223444 478999999994332 222211
Q ss_pred hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..++|++++|++++... +......|+..+..... ..|+++|+||.|+.
T Consensus 72 -~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~---~~piilvgNK~DL~ 120 (191)
T cd01875 72 -YPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP---NVPILLVGTKKDLR 120 (191)
T ss_pred -ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEeChhhh
Confidence 15899999999986543 33222346655554332 36999999999985
No 112
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.58 E-value=3.6e-14 Score=110.45 Aligned_cols=115 Identities=13% Similarity=0.114 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee--eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS--RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|.+|+|||||+++++.... .....++........... .....+.+|||||........+. .+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~---~~------ 70 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDG---YY------ 70 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHH---Hh------
Confidence 5899999999999999999986552 111112111111111112 23457999999998644322221 11
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++.....+.-..++..+....+ ..|+++|+||+|+.
T Consensus 71 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~ 117 (166)
T cd00877 71 IGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIK 117 (166)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcc
Confidence 489999999888653322333456666666544 37999999999985
No 113
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.58 E-value=4.6e-14 Score=114.70 Aligned_cols=114 Identities=14% Similarity=0.117 Sum_probs=73.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~ 119 (243)
+||+++|.+|+|||||++.+++.... ...+ |.........+....+.+|||||........ ..++ .+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~--~~~~--Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~-------~~~~--~~ 67 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK--DTVS--TVGGAFYLKQWGPYNISIWDTAGREQFHGLG-------SMYC--RG 67 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC--CCCC--ccceEEEEEEeeEEEEEEEeCCCcccchhhH-------HHHh--cc
Confidence 58999999999999999999987742 2222 2222222333456689999999985432211 1122 58
Q ss_pred CcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 120 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
+|++|+|++++.....+....++..+.+.... ..|+++|+||+|+..
T Consensus 68 ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~--~~piIlVgNK~DL~~ 114 (220)
T cd04126 68 AAAVILTYDVSNVQSLEELEDRFLGLTDTANE--DCLFAVVGNKLDLTE 114 (220)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccccc
Confidence 99999998886533222233344344443332 258999999999864
No 114
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.58 E-value=2.4e-14 Score=113.95 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCC-CeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t-~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
+||+++|.+|+|||||++++++... ....+.++. ..........++. .+.+|||||........ ..++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-------~~~~- 71 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRF-LVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMS-------RIYY- 71 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCc-CCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhh-------Hhhc-
Confidence 5899999999999999999998763 222222221 1111223444554 56799999984332111 1111
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++.....+....|++.+..... ..|+++|+||+|+.
T Consensus 72 -~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 118 (193)
T cd04118 72 -RGAKAAIVCYDLTDSSSFERAKFWVKELQNLEE---HCKIYLCGTKSDLI 118 (193)
T ss_pred -CCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCC---CCCEEEEEEccccc
Confidence 489999999887643222223456666655321 36999999999985
No 115
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.58 E-value=7.2e-15 Score=109.96 Aligned_cols=149 Identities=16% Similarity=0.064 Sum_probs=97.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..+||+++|.+|+|||||+-++..... ........+.+.......++|. ++.+|||+|+...+...+. ++
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~f-d~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpS---yy---- 81 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTF-DDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPS---YY---- 81 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhccc-CccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHh---Hh----
Confidence 359999999999999999999887653 2222112344444555566654 7999999999777666654 23
Q ss_pred hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHhhhHHHHHHHccccC
Q 026113 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTW 194 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 194 (243)
+++.++|+|+++.... +... ..|++.+.-... +...-.++|+||+|....+.++-++-++-..+.-.-+|+++++
T Consensus 82 --RgaqGiIlVYDVT~Rdtf~kL-d~W~~Eld~Yst-n~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAk 157 (209)
T KOG0080|consen 82 --RGAQGIILVYDVTSRDTFVKL-DIWLKELDLYST-NPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAK 157 (209)
T ss_pred --ccCceeEEEEEccchhhHHhH-HHHHHHHHhhcC-CccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchh
Confidence 4999999999987533 3333 456666554433 2224578999999975455666666555444444445666665
Q ss_pred Cccc
Q 026113 195 MKKK 198 (243)
Q Consensus 195 ~~~~ 198 (243)
....
T Consensus 158 t~~~ 161 (209)
T KOG0080|consen 158 TREN 161 (209)
T ss_pred hhcc
Confidence 5443
No 116
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.58 E-value=2.4e-14 Score=120.27 Aligned_cols=123 Identities=19% Similarity=0.346 Sum_probs=75.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccC-CCC------CCCe--eEEEEeeeCC--eEEEEEeCCCCCCCCCCcH--
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVST-FQS------EGPR--PVMVSRSRAG--FTLNIVDTPGLIEGGYVNY-- 105 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~-~~~------~t~~--~~~~~~~~~~--~~~~viDTPG~~~~~~~~~-- 105 (243)
.++|+|+|.+|+|||||+|+|++........ .+. .+.. ........++ .++.|+||||+++.-....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 5899999999999999999999987544321 110 1111 1112222333 3799999999987533221
Q ss_pred -HHHHHHH----HHHh-----------cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 106 -HAIQLIK----RFLL-----------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 106 -~~~~~~~----~~~~-----------~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.+..++. .++. +...|++||+++.+..++.+.|...++.+.+. .++|.|+.|+|..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~l 155 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEeccccc
Confidence 1222222 2221 34689999998877666888888888777765 6999999999986
No 117
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.58 E-value=9.3e-15 Score=107.19 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=68.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccc-ccCCCCCCCeeE--EEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVT-VSTFQSEGPRPV--MVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~-~~~~~~~t~~~~--~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
||+++|..|+|||||+++|++..... ....+..+.... ..........+.+||++|.......... .+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~---~~------ 71 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQF---FL------ 71 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHH---HH------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccc---hh------
Confidence 79999999999999999999887531 111111111122 1222223335899999998433222211 12
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 165 (243)
..+|++++|+++......+.-..++.++...-+.....|+++|+||.|
T Consensus 72 ~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 72 KKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred hcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 378999999888654322222334455555443233479999999997
No 118
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.58 E-value=6.6e-14 Score=109.24 Aligned_cols=113 Identities=15% Similarity=0.209 Sum_probs=71.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+.++|+++|.+|+|||||++++..... ....|+.+.. .......+..+.+|||||.... ......++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~--~~~~~t~g~~--~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~-- 74 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQS--VTTIPTVGFN--VETVTYKNVKFNVWDVGGQDKI-------RPLWRHYY-- 74 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCC--ccccCCcccc--eEEEEECCEEEEEEECCCCHHH-------HHHHHHHh--
Confidence 568999999999999999999986543 2222322222 2233456789999999998421 11112222
Q ss_pred CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcc--cccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|+++.... +.+ ..+++.+.... ....|+++|+||+|+.
T Consensus 75 ~~a~~ii~v~D~t~~~s~~~----~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 75 TGTQGLIFVVDSADRDRIDE----ARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred ccCCEEEEEEeCCchhhHHH----HHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 4899999998875432 222 22233333221 1236999999999985
No 119
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.58 E-value=5.5e-14 Score=114.34 Aligned_cols=114 Identities=15% Similarity=0.108 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|.+|+|||||++.+++... .....|+.. .........++ ..+.+|||+|..... .++.. ..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~pTi~-~~~~~~~~~~~~~v~L~iwDt~G~e~~~--------~l~~~-~~ 70 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY-PGSYVPTVF-ENYTASFEIDKRRIELNMWDTSGSSYYD--------NVRPL-AY 70 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCccCCccc-cceEEEEEECCEEEEEEEEeCCCcHHHH--------HHhHH-hc
Confidence 7999999999999999999997763 222222222 22222333444 478899999984221 22211 12
Q ss_pred CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+++|++|+|++++... +......|...+..... ..|+++|+||+|+.
T Consensus 71 ~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~---~~piiLVgnK~DL~ 118 (222)
T cd04173 71 PDSDAVLICFDISRPETLDSVLKKWQGETQEFCP---NAKVVLVGCKLDMR 118 (222)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEECcccc
Confidence 6999999999886533 33333445544444332 26999999999985
No 120
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.58 E-value=1.3e-13 Score=107.44 Aligned_cols=120 Identities=21% Similarity=0.191 Sum_probs=74.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..+||+++|.+|+|||||++++++... .....+..+..........++ ..+.+|||||.... ......++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~~~~ 75 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF-------RSLRTPFY 75 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCC-CcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHH-------HHhHHHHh
Confidence 468999999999999999999997763 222222222222222333444 46789999997321 11112222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc--cccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++.....+....+...+...... ....|+++|+||+|+.
T Consensus 76 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 76 --RGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred --cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 5889999998887543223334455555444321 1236999999999985
No 121
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.58 E-value=5.2e-14 Score=114.67 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCC-CeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t-~~~~~~~~~~--~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
+||+++|.+|+|||||++.+++.... ...+.++. .+.......+ ....+.+|||||.. . .+...+.
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~-------~---~~~~~~~ 69 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE-------M---WTEDSCM 69 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc-------h---HHHhHHh
Confidence 58999999999999999999866532 11222211 1222222333 34579999999995 1 1111111
Q ss_pred cC-CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113 117 NK-TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 117 ~~-~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
. ++|++++|++++.....+....++..+..... ....|+++|+||+|+.+.+..+
T Consensus 70 -~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~~~v~ 125 (221)
T cd04148 70 -QYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARSREVS 125 (221)
T ss_pred -hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhccccceec
Confidence 3 89999999888654322333456665555321 1247999999999986444333
No 122
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.58 E-value=5.1e-14 Score=108.54 Aligned_cols=117 Identities=17% Similarity=0.107 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|.+|+|||||+|++++..... ...+..+.+.........+ ..+.+|||||...... ....++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~-- 70 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP-DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRT-------LTSSYY-- 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-ccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhh-------hhHHHh--
Confidence 589999999999999999999876422 1222222222222223333 5789999999743211 112222
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++.....+....++..+..... ....|+++|+||+|+.
T Consensus 71 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 71 RGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKE 119 (161)
T ss_pred CCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCccc
Confidence 489999999887643322233446666655543 2336899999999986
No 123
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.57 E-value=5.1e-14 Score=109.21 Aligned_cols=117 Identities=13% Similarity=0.067 Sum_probs=69.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccc---cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTV---STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+|+++|.+|+|||||+|.+++...... ......|.........+++..+.+|||||+.+.. .....++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~-- 71 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR-------SLWDKYY-- 71 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhH-------HHHHHHh--
Confidence 589999999999999999987532110 0111122222233455678899999999985321 1122222
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++............++..+.+... ....|+++|+||+|+.
T Consensus 72 ~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 72 AECHAIIYVIDSTDRERFEESKSALEKVLRNEA-LEGVPLLILANKQDLP 120 (167)
T ss_pred CCCCEEEEEEECchHHHHHHHHHHHHHHHhChh-hcCCCEEEEEEccccc
Confidence 589999999776432111112223332222111 1236999999999985
No 124
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.57 E-value=9.3e-14 Score=108.38 Aligned_cols=113 Identities=9% Similarity=0.018 Sum_probs=71.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 120 (243)
||+++|.+|+|||||++++.+... ....+ |...........+..+.+|||||..+.. ..+...+ .++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~~~~--T~~~~~~~~~~~~~~i~l~Dt~G~~~~~---~~~~~~~------~~a 67 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQPIP--TIGFNVETVEYKNLKFTIWDVGGKHKLR---PLWKHYY------LNT 67 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CCcCC--cCceeEEEEEECCEEEEEEECCCChhcc---hHHHHHh------ccC
Confidence 689999999999999999998742 22222 2222223445678899999999985322 1111222 489
Q ss_pred cEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 121 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
|++++|++.+.....+....++..+..... ....|+++|+||+|+.
T Consensus 68 d~ii~V~D~s~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 113 (169)
T cd04158 68 QAVVFVVDSSHRDRVSEAHSELAKLLTEKE-LRDALLLIFANKQDVA 113 (169)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHhcChh-hCCCCEEEEEeCcCcc
Confidence 999999887543211222333333332211 1126999999999985
No 125
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.57 E-value=8e-14 Score=112.79 Aligned_cols=122 Identities=15% Similarity=0.132 Sum_probs=76.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
.+||+++|.+|+|||||++.+++...... ..++.+.+........ .+ ..+.+|||||..... .....++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~ 73 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFR-------SITRSYY 73 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHH-------HHHHHHh
Confidence 47999999999999999999998764222 1222222222222222 23 478999999974221 1112222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~ 171 (243)
.++|++++|++++.....+....++..+.+..... ..++++|+||+|+.+...
T Consensus 74 --~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~-~~~iilvgNK~Dl~~~~~ 126 (211)
T cd04111 74 --RNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPH-RPVFILVGHKCDLESQRQ 126 (211)
T ss_pred --cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEccccccccc
Confidence 58999999988865432233445666665554322 257899999999864333
No 126
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.57 E-value=2.2e-14 Score=114.06 Aligned_cols=115 Identities=18% Similarity=0.169 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
.||+++|.+|+|||||++.+++...... ..++... ........++ ..+.+|||||.......... + .
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~-~~~t~~~-~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~-------~--~ 69 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQV-YEPTVFE-NYVHDIFVDGLHIELSLWDTAGQEEFDRLRSL-------S--Y 69 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCc-cCCccee-eeEEEEEECCEEEEEEEEECCCChhccccccc-------c--c
Confidence 3899999999999999999998763221 1122111 1112223334 57899999998543222111 1 1
Q ss_pred CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
.++|++++|++++... +......|+..+..... ..|+++|+||+|+..
T Consensus 70 ~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~---~~piilvgNK~Dl~~ 118 (189)
T cd04134 70 ADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLRE 118 (189)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 4899999999987643 33333456767765432 369999999999863
No 127
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.57 E-value=2.1e-13 Score=108.57 Aligned_cols=121 Identities=22% Similarity=0.230 Sum_probs=75.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKR 113 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~---~~~~~~~~~ 113 (243)
...+|+++|.+|+|||||+|++++.. .......+++|....... . +.++.+|||||+....... +.....+..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 56899999999999999999999875 333333333333222221 2 4689999999986543322 122222333
Q ss_pred HHh-cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 114 FLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 114 ~~~-~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
++. ....+++++|++.+. ..+..+..+.+++.. ...|+++|+||+|+.
T Consensus 100 ~~~~~~~~~~~~~v~d~~~-~~~~~~~~i~~~l~~-----~~~~~iiv~nK~Dl~ 148 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRH-PLKELDLQMIEWLKE-----YGIPVLIVLTKADKL 148 (196)
T ss_pred HHHhCccceEEEEEEecCC-CCCHHHHHHHHHHHH-----cCCcEEEEEECcccC
Confidence 332 235678888865543 244444444544432 236899999999985
No 128
>PRK04213 GTP-binding protein; Provisional
Probab=99.57 E-value=8.2e-14 Score=111.65 Aligned_cols=120 Identities=17% Similarity=0.204 Sum_probs=72.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH----HHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH----AIQLIKR 113 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~----~~~~~~~ 113 (243)
..++|+++|.+|+|||||+|++++... .+...++.|..... ..+. ++.+|||||++......+. ....+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKPNH--YDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCceE--Eeec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 468999999999999999999998763 44444444433322 2222 6899999998654433322 2222222
Q ss_pred HHh--cCCCcEEEEEEeCCCcc-c---------ChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 114 FLL--NKTIDVLLYVDRLDVYR-V---------DNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 114 ~~~--~~~~~~il~v~~~d~~~-~---------~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
++. ...++++++|++.+... + ...+..++..+.. ...|+++|+||+|+.
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~ 143 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKI 143 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECcccc
Confidence 322 24578888886653210 1 1112233333332 136999999999985
No 129
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.57 E-value=1.6e-13 Score=108.44 Aligned_cols=115 Identities=20% Similarity=0.114 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|..|+|||||++.+++... .....++.+..........++ ..+.+|||+|..... .+... ..
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f-~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~--------~~~~~-~~ 70 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEF-DEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFI--------NMLPL-VC 70 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHH--------HhhHH-HC
Confidence 5899999999999999999987753 222223222222222344455 478999999984321 11111 12
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++.....+....|++.+.+..... .| ++|+||+|+.
T Consensus 71 ~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~ 117 (182)
T cd04128 71 NDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLF 117 (182)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhcc
Confidence 58999999988865433333446666666543322 35 6899999985
No 130
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.56 E-value=2.3e-14 Score=105.89 Aligned_cols=123 Identities=20% Similarity=0.198 Sum_probs=86.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
++.+++|.+|+|||||+-.+.... +..+.....+.+.......++| ..++||||+|. +.++.|...+.
T Consensus 9 fkllIigDsgVGKssLl~rF~ddt-Fs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq--------ErFrtitstyy- 78 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDT-FSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ--------ERFRTITSTYY- 78 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcc-cccceEEEeeeeEEEEEeecCCcEEEEEEeecccH--------HHHHHHHHHHc-
Confidence 567899999999999998877664 3333222233333344444544 47999999999 44444433221
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
.++|++++|+++.+......-++||+.++..+.. .|-++|+||.|....+....+
T Consensus 79 rgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~RrvV~t~ 133 (198)
T KOG0079|consen 79 RGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPERRVVDTE 133 (198)
T ss_pred cCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCccceeeehH
Confidence 6999999999997655556788999999998873 689999999998644444333
No 131
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.56 E-value=7.1e-14 Score=110.64 Aligned_cols=115 Identities=19% Similarity=0.173 Sum_probs=70.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
+||+++|.+|+|||||++++++.... ....++.... ........ ...+.+|||||..+.. .++.. .
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~-~~~~i~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~-~ 69 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP-EEYVPTVFEN-YVTNIQGPNGKIIELALWDTAGQEEYD--------RLRPL-S 69 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC-CCCCCeeeee-eEEEEEecCCcEEEEEEEECCCchhHH--------HHHHH-h
Confidence 58999999999999999999987632 2221211111 11122222 3478999999974221 12211 1
Q ss_pred cCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
..++|++++|++++... +......|+..+... .. ..|+++|+||+|+.+
T Consensus 70 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~--~~piilv~nK~Dl~~ 119 (187)
T cd04132 70 YPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CP--GTPIMLVGLKTDLRK 119 (187)
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CC--CCCEEEEEeChhhhh
Confidence 25899999998886532 222223355545433 22 369999999999853
No 132
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.56 E-value=1.1e-13 Score=108.68 Aligned_cols=116 Identities=13% Similarity=0.136 Sum_probs=71.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+.+||+++|..|+|||||++.+..... ....|+.+. ........+..+.+|||||.... ......++
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~t~~~--~~~~~~~~~~~l~l~D~~G~~~~-------~~~~~~~~- 78 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGES--VTTIPTIGF--NVETVTYKNISFTVWDVGGQDKI-------RPLWRHYY- 78 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCC--CCcCCcccc--ceEEEEECCEEEEEEECCCChhh-------HHHHHHHh-
Confidence 3579999999999999999999965442 122232222 22234456789999999998432 11122222
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHH-HHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAIT-DNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~-~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|+++......+....++..+. .... ...|+++|+||+|+.
T Consensus 79 -~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~--~~~piilv~NK~Dl~ 127 (175)
T smart00177 79 -TNTQGLIFVVDSNDRDRIDEAREELHRMLNEDEL--RDAVILVFANKQDLP 127 (175)
T ss_pred -CCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhh--cCCcEEEEEeCcCcc
Confidence 58999999988754321122223333322 1111 136999999999985
No 133
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.56 E-value=2.4e-14 Score=111.84 Aligned_cols=112 Identities=18% Similarity=0.155 Sum_probs=72.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (243)
Q Consensus 42 IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~ 119 (243)
|+++|.+|+|||||++++++... .....++ ...........++. .+.+|||||..+...... . ...+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------~-~~~~ 69 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF-PEDYVPT-VFENYSADVEVDGKPVELGLWDTAGQEDYDRLRP--------L-SYPD 69 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC-CCCCCCc-EEeeeeEEEEECCEEEEEEEEECCCCcccchhch--------h-hcCC
Confidence 68999999999999999998763 2221121 11112222334443 689999999854332111 1 1158
Q ss_pred CcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 120 IDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 120 ~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+|++++|++++... +......|+..+.+..+ ..|+++|+||+|+.
T Consensus 70 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 115 (174)
T smart00174 70 TDVFLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLR 115 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhh
Confidence 99999998886533 33333356666665443 37999999999985
No 134
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.56 E-value=5.6e-14 Score=108.28 Aligned_cols=116 Identities=17% Similarity=0.170 Sum_probs=70.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 120 (243)
+|+++|.+|+|||||++.+.+.........++.+ .........+..+.+|||||..+.. .....++ .++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g--~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~--~~~ 69 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVG--FNVESFEKGNLSFTAFDMSGQGKYR-------GLWEHYY--KNI 69 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccc--cceEEEEECCEEEEEEECCCCHhhH-------HHHHHHH--ccC
Confidence 5899999999999999999986532211122222 1222234567889999999984321 1122222 489
Q ss_pred cEEEEEEeCCCcccChhHHHHHHHHHHHhc-ccccccEEEEEeCCCCC
Q 026113 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFG-EQIWKRALIVLTHAQLS 167 (243)
Q Consensus 121 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~-~~~~~~~ivV~tk~D~~ 167 (243)
|++++|++............++..+..... .....|+++|+||+|+.
T Consensus 70 d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 70 QGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 999999776542211222334444433211 11247999999999985
No 135
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.56 E-value=1.1e-13 Score=106.26 Aligned_cols=116 Identities=20% Similarity=0.204 Sum_probs=74.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~ 118 (243)
||+++|.+|+|||||++++++.. ......+++...........+ ..+.+|||||..+.. .....++ .
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~--~ 69 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFS-------AMRDLYI--R 69 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHH--h
Confidence 68999999999999999999876 233333333333333344443 478999999984311 1111222 4
Q ss_pred CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
.+|++++|++++.....+....+...+....+. ...|+++|+||+|+..
T Consensus 70 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 70 QGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLEN 118 (160)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccc
Confidence 789999998876533223334444455544431 2379999999999864
No 136
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.56 E-value=1.3e-13 Score=106.31 Aligned_cols=117 Identities=18% Similarity=0.171 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|.+|+|||||++++++... .....+++..........+ +..+.+|||||..+... . ...++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~----~~~~~-- 69 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAA---I----RDNYH-- 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhH---H----HHHHh--
Confidence 5899999999999999999997763 2222222222222222333 35799999999853321 1 11122
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
.+.+++++|++++.......-..+...+..... ....|+++|+||+|+..
T Consensus 70 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 70 RSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED 119 (164)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence 478999999877643322223444444444322 22379999999999863
No 137
>PLN03108 Rab family protein; Provisional
Probab=99.56 E-value=2.8e-13 Score=109.48 Aligned_cols=126 Identities=14% Similarity=0.099 Sum_probs=77.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..+||+++|.+|+|||||+|.+++...... ..++.+.+.........+ ..+.+|||||..... .....++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~-~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~-------~~~~~~~ 76 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-------SITRSYY 76 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHh
Confidence 358999999999999999999998764222 222222222222334444 368899999974211 1111222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
.++|++++|+++......+....|+..+...... ..|+++|+||+|+......+.+
T Consensus 77 --~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~~~~~~~ 132 (210)
T PLN03108 77 --RGAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDLAHRRAVSTE 132 (210)
T ss_pred --ccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccccCCCHH
Confidence 4899999998876533223334555555544332 3699999999998644444433
No 138
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.56 E-value=8.8e-14 Score=109.16 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=72.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|.+|+|||||+.++++... . ..+.++...........++ ..+.+|||||..+..... ..++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~-- 70 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF-P-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR-------PLSY-- 70 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-C-CcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhh-------hhhc--
Confidence 6999999999999999999997653 2 2222222122122233444 478899999984332111 1112
Q ss_pred CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++|+|++++... +......|+..+....+ ..|+++|+||+|+.
T Consensus 71 ~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilvgnK~Dl~ 118 (174)
T cd01871 71 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR 118 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhc
Confidence 4899999999886532 32322346666655432 36999999999985
No 139
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.56 E-value=6.9e-14 Score=113.82 Aligned_cols=118 Identities=10% Similarity=0.059 Sum_probs=76.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...+||+++|.+|+|||||+++++.... .....++.+.......... ....+.+|||||........ ..+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f-~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~ 82 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-------DGY 82 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCC-CCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhh-------HHH
Confidence 4679999999999999999999876652 2222222222222222222 23589999999985432111 112
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+ .++|++|+|++++.....+....|++.+.+... ..|+++|+||+|+.
T Consensus 83 ~--~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~ 130 (219)
T PLN03071 83 Y--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVK 130 (219)
T ss_pred c--ccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhhh
Confidence 2 489999999888754333344567777766532 36999999999985
No 140
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.55 E-value=1.1e-13 Score=107.43 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=74.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
.-.+|+++|.+|+|||||++++++.... ....++.+.........+.+ ..+.+|||||.... ......++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~ 77 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF-------RSITQSYY 77 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHh
Confidence 3589999999999999999999866532 12222222223333344555 46889999997422 11112233
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
..+|++++|+++......+....++..+......+ .|+++|+||+|+.+.
T Consensus 78 --~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~~ 127 (169)
T cd04114 78 --RSANALILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLAER 127 (169)
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc
Confidence 48999999987754221122235555555544332 589999999998643
No 141
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.55 E-value=1.5e-13 Score=112.78 Aligned_cols=87 Identities=22% Similarity=0.296 Sum_probs=62.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 120 (243)
+|+++|.+|+|||||+|+|+|... .+..++.+|..+......+.+..+++|||||+.+...........+..+ ...+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~--~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAV--ARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHh--hccC
Confidence 789999999999999999999874 4556666676666666678899999999999865432222211111122 2589
Q ss_pred cEEEEEEeCC
Q 026113 121 DVLLYVDRLD 130 (243)
Q Consensus 121 ~~il~v~~~d 130 (243)
|++++|++..
T Consensus 79 d~il~V~D~t 88 (233)
T cd01896 79 DLILMVLDAT 88 (233)
T ss_pred CEEEEEecCC
Confidence 9999996653
No 142
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.3e-13 Score=105.78 Aligned_cols=126 Identities=16% Similarity=0.144 Sum_probs=88.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+|.+++|.+|+|||+|+-.++.....++.+ .+.+.+.......+++ .+++||||+|+.. ..+..+.|.
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd-~TiGvefg~r~~~id~k~IKlqiwDtaGqe~-------frsv~~syY- 76 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-LTIGVEFGARMVTIDGKQIKLQIWDTAGQES-------FRSVTRSYY- 76 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc-ceeeeeeceeEEEEcCceEEEEEEecCCcHH-------HHHHHHHHh-
Confidence 4899999999999999999999887543333 2223333333344555 4799999999932 222333344
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHH
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~ 176 (243)
.++-+.|+|++++..........||..+++....+ --+++++||+|+...+.++-++
T Consensus 77 -r~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~N--mvImLiGNKsDL~~rR~Vs~EE 133 (216)
T KOG0098|consen 77 -RGAAGALLVYDITRRESFNHLTSWLEDARQHSNEN--MVIMLIGNKSDLEARREVSKEE 133 (216)
T ss_pred -ccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCC--cEEEEEcchhhhhccccccHHH
Confidence 58999999999987555567778888888875443 3689999999997666655443
No 143
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.55 E-value=1.1e-13 Score=106.87 Aligned_cols=123 Identities=23% Similarity=0.223 Sum_probs=83.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~ 118 (243)
||+++|..|+|||||++.+.+... .....++...+........++. .+.+|||+|.... . ..... ++ .
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~---~-~~~~~---~~--~ 70 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF---D-SLRDI---FY--R 70 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG---H-HHHHH---HH--T
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-ccccccccccccccccccccccccccccccccccccc---c-ccccc---cc--c
Confidence 799999999999999999997763 2222232223444444455554 6999999997322 1 11111 11 5
Q ss_pred CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
++|++++|++++.....+.-..|+..+....+.. .|+++|+||.|+.+.+..+.+
T Consensus 71 ~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~--~~iivvg~K~D~~~~~~v~~~ 125 (162)
T PF00071_consen 71 NSDAIIIVFDVTDEESFENLKKWLEEIQKYKPED--IPIIVVGNKSDLSDEREVSVE 125 (162)
T ss_dssp TESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTT--SEEEEEEETTTGGGGSSSCHH
T ss_pred cccccccccccccccccccccccccccccccccc--ccceeeeccccccccccchhh
Confidence 8999999999876544444557888888776632 599999999998754455544
No 144
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.55 E-value=9.2e-14 Score=105.66 Aligned_cols=117 Identities=26% Similarity=0.352 Sum_probs=74.7
Q ss_pred EEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcE
Q 026113 44 VMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 122 (243)
Q Consensus 44 lvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (243)
++|.+|+||||++|++++.........++.+........... +..+.+|||||+.+...........+..++ ..+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~--~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVL--ERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHH--HhCCE
Confidence 589999999999999999875544444444444444444433 678999999999876654432222333333 48999
Q ss_pred EEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 123 il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
+++|++..... ...... .+..... ...|+++|+||+|+..
T Consensus 79 il~v~~~~~~~-~~~~~~---~~~~~~~--~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 79 ILFVVDADLRA-DEEEEK---LLELLRE--RGKPVLLVLNKIDLLP 118 (163)
T ss_pred EEEEEeCCCCC-CHHHHH---HHHHHHh--cCCeEEEEEEccccCC
Confidence 99997765422 222222 1222111 2369999999999863
No 145
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.55 E-value=1.5e-13 Score=107.04 Aligned_cols=113 Identities=16% Similarity=0.117 Sum_probs=71.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 120 (243)
+|+++|.+|+|||||++.+.+.. .....++ ...........+..+.+|||||... .......++ .++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~--~~~~~~t--~g~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~--~~a 67 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEI--PKKVAPT--VGFTPTKLRLDKYEVCIFDLGGGAN-------FRGIWVNYY--AEA 67 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC--CccccCc--ccceEEEEEECCEEEEEEECCCcHH-------HHHHHHHHH--cCC
Confidence 48999999999999999999762 2222222 2222334556788999999999732 112223333 589
Q ss_pred cEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 121 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
|++++|++.......+....++..+..... ....|+++|+||+|+.
T Consensus 68 ~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~ 113 (167)
T cd04161 68 HGLVFVVDSSDDDRVQEVKEILRELLQHPR-VSGKPILVLANKQDKK 113 (167)
T ss_pred CEEEEEEECCchhHHHHHHHHHHHHHcCcc-ccCCcEEEEEeCCCCc
Confidence 999999776543211222334444433211 1236999999999985
No 146
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.55 E-value=1.6e-13 Score=108.53 Aligned_cols=116 Identities=13% Similarity=0.186 Sum_probs=71.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
++.+||+++|.+|+|||||++.+...... ...|+. ..........+..+.+|||||.... ......++
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~--~~~~T~--~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~- 82 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVV--TTIPTI--GFNVETVEYKNLKFTMWDVGGQDKL-------RPLWRHYY- 82 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCcc--ccceEEEEECCEEEEEEECCCCHhH-------HHHHHHHh-
Confidence 35799999999999999999999755421 222222 2222334457789999999998421 11112222
Q ss_pred cCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++|+|++++... +......+.+.+.... ....|+++|+||.|+.
T Consensus 83 -~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~--~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 83 -QNTNGLIFVVDSNDRERIGDAREELERMLSEDE--LRDAVLLVFANKQDLP 131 (182)
T ss_pred -cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHh--hcCCCEEEEEeCCCCC
Confidence 5899999998875432 3222222222222111 1236899999999984
No 147
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.55 E-value=8.4e-14 Score=126.01 Aligned_cols=125 Identities=18% Similarity=0.254 Sum_probs=95.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLL 116 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~-~~~~~~~~~~~~~ 116 (243)
+..+++++|.+|+||||+.|+++|.+. .+++.|+.|.+.........+..+.++|+||.++-... .+| ...++++.
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE--~Var~~ll 78 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDE--KVARDFLL 78 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchH--HHHHHHHh
Confidence 356799999999999999999999996 78999999999888888999999999999999865432 222 24466777
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
...+|+|+-| +|.+.+...-.-+++.+. ...|+++++|.+|..+.....
T Consensus 79 ~~~~D~ivnV--vDAtnLeRnLyltlQLlE------~g~p~ilaLNm~D~A~~~Gi~ 127 (653)
T COG0370 79 EGKPDLIVNV--VDATNLERNLYLTLQLLE------LGIPMILALNMIDEAKKRGIR 127 (653)
T ss_pred cCCCCEEEEE--cccchHHHHHHHHHHHHH------cCCCeEEEeccHhhHHhcCCc
Confidence 7899999999 665444333333333222 236999999999987555443
No 148
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.55 E-value=3.1e-13 Score=106.77 Aligned_cols=115 Identities=14% Similarity=0.175 Sum_probs=72.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
++.+||+++|..|+|||||++.+..... ....|+.+ .........+..+.+|||||... .......++
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~--~~~~pt~g--~~~~~~~~~~~~~~i~D~~Gq~~-------~~~~~~~~~- 82 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIG--FNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYF- 82 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC--ccccCCcc--eeEEEEEECCEEEEEEECCCCHH-------HHHHHHHHh-
Confidence 4579999999999999999999986543 22222222 22233456778999999999732 111222233
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccc--ccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~tk~D~~ 167 (243)
.++|++++|+++.... .-.....++...+... ...|+++|+||.|+.
T Consensus 83 -~~a~~iI~V~D~s~~~---s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 83 -QNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred -ccCCEEEEEEeCCcHH---HHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 5899999997775422 1112222333332211 136999999999985
No 149
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.55 E-value=1.2e-13 Score=106.13 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=71.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 120 (243)
||+++|.+|+|||||++++++.... ...+ +.........+.+..+.+|||||.... .. ....++ .++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~---~~----~~~~~~--~~~ 67 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV--TTIP--TIGFNVETVEYKNVSFTVWDVGGQDKI---RP----LWKHYY--ENT 67 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC--CCCC--CcCcceEEEEECCEEEEEEECCCChhh---HH----HHHHHh--ccC
Confidence 6899999999999999999988721 1111 222223344566789999999998532 11 112222 478
Q ss_pred cEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 121 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
|++++|+++...........++..+..... ....|+++|+||+|+.
T Consensus 68 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~ 113 (158)
T cd00878 68 NGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLP 113 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCc
Confidence 999999877643211222233333333221 1247999999999986
No 150
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.54 E-value=6.6e-14 Score=109.55 Aligned_cols=114 Identities=21% Similarity=0.187 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+|++++|.+|+|||||++++++... ...+.++...........++ ..+.+|||||......... .+ .
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~--~ 69 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY--PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRP-------LC--Y 69 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccc-------cc--c
Confidence 5899999999999999999987652 22233332222222334444 4788999999854322211 11 1
Q ss_pred CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|+++.... +......|+..+..... ..|+++|+||+|+.
T Consensus 70 ~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 117 (173)
T cd04130 70 PDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP---KAPIILVGTQADLR 117 (173)
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhhc
Confidence 4899999998886533 33333456666654322 36999999999985
No 151
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.54 E-value=1.6e-13 Score=106.38 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=69.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
.|+++|.+|+|||||+|+|++..... ...+..|.......... .+..+.+|||||.... ......+.
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~~~~~~-- 71 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-------TNMRARGA-- 71 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-------HHHHHHHH--
Confidence 48999999999999999999876432 22222332222233333 3678999999998421 11111122
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+|++++|++++.. ........+..+.. ...|+++|+||+|+.
T Consensus 72 ~~~d~il~v~d~~~~-~~~~~~~~~~~~~~-----~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 72 SLTDIAILVVAADDG-VMPQTIEAIKLAKA-----ANVPFIVALNKIDKP 115 (168)
T ss_pred hhcCEEEEEEECCCC-ccHHHHHHHHHHHH-----cCCCEEEEEEceecc
Confidence 489999999777542 22333334444332 236999999999985
No 152
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.54 E-value=1.7e-14 Score=125.55 Aligned_cols=144 Identities=22% Similarity=0.264 Sum_probs=105.4
Q ss_pred HHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 026113 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 107 (243)
Q Consensus 28 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~ 107 (243)
.+.++...+...-+++++|.+++||||++|.++..++ .+.+++.+|..-......+.-..++++||||+.|....+...
T Consensus 157 hl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~ 235 (620)
T KOG1490|consen 157 HLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNI 235 (620)
T ss_pred HHhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhH
Confidence 3444555666778999999999999999999887775 677888887766666666666789999999998766555443
Q ss_pred HHHHHHHHhcCCCcEEEEEEeCCCcc--cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 108 IQLIKRFLLNKTIDVLLYVDRLDVYR--VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 108 ~~~~~~~~~~~~~~~il~v~~~d~~~--~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
++...-.....-..+|||++++...+ .-+.+.++.+.++.+|.. +++|+|+||+|...+++.+.+
T Consensus 236 IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~IlvlNK~D~m~~edL~~~ 302 (620)
T KOG1490|consen 236 IEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTILVLNKIDAMRPEDLDQK 302 (620)
T ss_pred HHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEEEeecccccCccccCHH
Confidence 33222111112346799998887665 234567888889999976 799999999999877665544
No 153
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.54 E-value=4.9e-14 Score=121.38 Aligned_cols=116 Identities=22% Similarity=0.273 Sum_probs=69.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCc-----ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKA-----VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLI 111 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~-----~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~ 111 (243)
..+++|+|+|.+|+|||||||+|.|-.- +.++. ..+|..+..+.... --++.+||.||.+.+....+++++.+
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv-~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGV-VETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSS-HSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC-CcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 3689999999999999999999987421 11111 12344444444322 12599999999987665555544433
Q ss_pred HHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113 112 KRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (243)
Q Consensus 112 ~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 166 (243)
. -...|++|++ .+ .++++.+..+.+.+++. | +++++|-||+|.
T Consensus 111 ~----~~~yD~fiii--~s-~rf~~ndv~La~~i~~~-g----K~fyfVRTKvD~ 153 (376)
T PF05049_consen 111 K----FYRYDFFIII--SS-ERFTENDVQLAKEIQRM-G----KKFYFVRTKVDS 153 (376)
T ss_dssp T----GGG-SEEEEE--ES-SS--HHHHHHHHHHHHT-T-----EEEEEE--HHH
T ss_pred c----ccccCEEEEE--eC-CCCchhhHHHHHHHHHc-C----CcEEEEEecccc
Confidence 2 2478988888 33 37889999888888876 3 689999999975
No 154
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.54 E-value=2.8e-13 Score=106.18 Aligned_cols=116 Identities=11% Similarity=0.056 Sum_probs=72.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+.++|+++|.+|+|||||++.+++..... ..+ |.........+.+..+.+|||||.... ......++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~-- 80 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH--TSP--TIGSNVEEIVYKNIRFLMWDIGGQESL-------RSSWNTYY-- 80 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC--cCC--ccccceEEEEECCeEEEEEECCCCHHH-------HHHHHHHh--
Confidence 46899999999999999999998765322 222 222223345567889999999998421 11122222
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++.+...........+..+.+..+ ....|+++|+||+|+.
T Consensus 81 ~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 81 TNTDAVILVIDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLK 129 (174)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCC
Confidence 489999999776542111112222333322111 1236999999999985
No 155
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.54 E-value=6.8e-14 Score=109.30 Aligned_cols=114 Identities=20% Similarity=0.167 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|.+|+|||||++++.+.... ....++...........++. .+.+|||||..+.....+. ..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---------~~ 69 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPL---------SY 69 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccc---------cC
Confidence 58999999999999999999987632 11212211122223334443 5789999998654322211 11
Q ss_pred CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++... +......|+..+... . ...|+++|+||+|+.
T Consensus 70 ~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~--~~~piivv~nK~Dl~ 117 (174)
T cd04135 70 PMTDVFLICFSVVNPASFQNVKEEWVPELKEY-A--PNVPYLLVGTQIDLR 117 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-C--CCCCEEEEeEchhhh
Confidence 5889999998876533 333334566666554 2 236999999999985
No 156
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.54 E-value=1.5e-13 Score=106.14 Aligned_cols=113 Identities=13% Similarity=0.183 Sum_probs=69.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~ 119 (243)
+||+++|.+|+|||||++.+..... ....|+.+.. ..........+.+|||||+... ......++ .+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~--~~~~pt~g~~--~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~--~~ 67 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIGFN--VETVEYKNISFTVWDVGGQDKI-------RPLWRHYF--QN 67 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--cccCCCCCcc--eEEEEECCEEEEEEECCCCHhH-------HHHHHHHh--cC
Confidence 4899999999999999999965542 2222322222 2234456788999999998421 11222222 58
Q ss_pred CcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 120 IDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 120 ~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+|++++|++.+... +.+. ..++..+..... ....|+++|+||+|+.
T Consensus 68 ad~~i~v~D~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 114 (159)
T cd04150 68 TQGLIFVVDSNDRERIGEA-REELQRMLNEDE-LRDAVLLVFANKQDLP 114 (159)
T ss_pred CCEEEEEEeCCCHHHHHHH-HHHHHHHHhcHH-hcCCCEEEEEECCCCC
Confidence 99999998875432 2222 222222221111 1126999999999985
No 157
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.54 E-value=2e-13 Score=108.31 Aligned_cols=117 Identities=14% Similarity=0.156 Sum_probs=74.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.++.+|+++|.+|+|||||++.+.+.... ...+ |.........+.+.++.+|||||..+. ......++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~--~~~~--T~~~~~~~i~~~~~~~~l~D~~G~~~~-------~~~~~~~~- 84 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA--QHVP--TLHPTSEELTIGNIKFKTFDLGGHEQA-------RRLWKDYF- 84 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc--ccCC--ccCcceEEEEECCEEEEEEECCCCHHH-------HHHHHHHh-
Confidence 46799999999999999999999987642 1112 222333455667889999999997321 11222233
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++............++..+.+.. .....|+++|+||+|+.
T Consensus 85 -~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 85 -PEVDGIVFLVDAADPERFQESKEELDSLLSDE-ELANVPFLILGNKIDLP 133 (190)
T ss_pred -ccCCEEEEEEECCcHHHHHHHHHHHHHHHcCc-cccCCCEEEEEeCCCCC
Confidence 48899999977653211112223333332211 11237999999999985
No 158
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.53 E-value=2.9e-13 Score=108.36 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=73.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~ 118 (243)
||+++|.+|+|||||++++++.... .....+..........+.+ ..+.+|||||..+... ++.. ...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~-~~~ 69 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPA--------MRKL-SIQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhH--------HHHH-Hhh
Confidence 6899999999999999999987632 2222222222222344455 5789999999853311 1111 114
Q ss_pred CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
++|++++|+++......+....++..+.+.... ...|+++|+||+|+..
T Consensus 70 ~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~ 118 (198)
T cd04147 70 NSDAFALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLE 118 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEcccccc
Confidence 899999998875432223334455555554332 2379999999999853
No 159
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.53 E-value=3.1e-13 Score=102.62 Aligned_cols=117 Identities=19% Similarity=0.279 Sum_probs=73.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
++||+++|.+|+|||||+|++++.. +.....+..+..........++ ..+.+|||||..+.... .....
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~---~~~~~----- 71 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAI---RRLYY----- 71 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHH---HHHHH-----
Confidence 3799999999999999999999988 4555555555554444455666 67899999996433211 11111
Q ss_pred cCCCcEEEEEEeCCCc--ccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVY--RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..++.++.++++... ........+...+...... ..|+++|+||+|+.
T Consensus 72 -~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~ 121 (161)
T TIGR00231 72 -RAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLR 121 (161)
T ss_pred -hhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCC
Confidence 245666666544221 1222233444444444332 36999999999986
No 160
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.53 E-value=5e-13 Score=104.33 Aligned_cols=117 Identities=17% Similarity=0.075 Sum_probs=72.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
+-+||+++|.+|+|||||++++++.........++............++ ..+.+|||+|.......... .+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~---~~---- 75 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDA---EL---- 75 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchh---hh----
Confidence 5689999999999999999999987742022222222222223334445 57889999998654322221 12
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++|+|++++... ......+++.. +......|+++|+||+|+.
T Consensus 76 --~~~d~~llv~d~~~~~---s~~~~~~~~~~-~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 76 --AACDVACLVYDSSDPK---SFSYCAEVYKK-YFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred --hcCCEEEEEEeCCCHH---HHHHHHHHHHH-hccCCCCeEEEEEEccccc
Confidence 4899999997775421 11112222322 2111247999999999985
No 161
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.53 E-value=2.3e-13 Score=128.16 Aligned_cols=123 Identities=17% Similarity=0.242 Sum_probs=86.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HH-HHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HA-IQLIKRF 114 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~--~~-~~~~~~~ 114 (243)
+..+|+++|.+|+|||||+|+++|.+. .+++.++.|.+.......+.+.++.+|||||+++...... .. .+..+.+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 357999999999999999999999875 5777788887776666777888999999999986532110 11 1122344
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
+....+|++++|++.+ .... ...+...+.+. ..|+++|+||+|+.+.
T Consensus 81 l~~~~aD~vI~VvDat--~ler-~l~l~~ql~e~-----giPvIvVlNK~Dl~~~ 127 (772)
T PRK09554 81 ILSGDADLLINVVDAS--NLER-NLYLTLQLLEL-----GIPCIVALNMLDIAEK 127 (772)
T ss_pred HhccCCCEEEEEecCC--cchh-hHHHHHHHHHc-----CCCEEEEEEchhhhhc
Confidence 4456899999995554 3322 22333333332 3799999999998633
No 162
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.52 E-value=4.5e-13 Score=104.55 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=72.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+.++|+++|.+|+|||||++.+.+...... .+ +...........+..+.+|||||... .......++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~--~~--t~g~~~~~i~~~~~~~~~~D~~G~~~-------~~~~~~~~~- 79 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHI--TP--TQGFNIKTVQSDGFKLNVWDIGGQRA-------IRPYWRNYF- 79 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCccc--CC--CCCcceEEEEECCEEEEEEECCCCHH-------HHHHHHHHh-
Confidence 3579999999999999999999998753221 11 22222334456788999999999732 112222332
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|+++...........++..+.+... ....|+++++||+|+.
T Consensus 80 -~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 80 -ENTDCLIYVIDSADKKRLEEAGAELVELLEEEK-LAGVPVLVFANKQDLA 128 (173)
T ss_pred -cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECCCCc
Confidence 488999999776542211112222222222111 1236999999999985
No 163
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.52 E-value=3.2e-13 Score=104.88 Aligned_cols=112 Identities=17% Similarity=0.169 Sum_probs=70.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 120 (243)
.|+++|.+|+|||||++.+.+... .....|+.+.. .......+..+.+|||||..... ..+...+ .++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~-~~~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~~~~~---~~~~~~~------~~a 68 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERS-LESVVPTTGFN--SVAIPTQDAIMELLEIGGSQNLR---KYWKRYL------SGS 68 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-cccccccCCcc--eEEEeeCCeEEEEEECCCCcchh---HHHHHHH------hhC
Confidence 379999999999999999998753 22222222221 23344567889999999985432 1122222 489
Q ss_pred cEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 121 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
|++++|++..........+.++..+... ....|+++|+||.|+.
T Consensus 69 d~ii~V~D~t~~~s~~~~~~~l~~~~~~---~~~~piilv~NK~Dl~ 112 (164)
T cd04162 69 QGLIFVVDSADSERLPLARQELHQLLQH---PPDLPLVVLANKQDLP 112 (164)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhC---CCCCcEEEEEeCcCCc
Confidence 9999997765422112223333333322 2347999999999985
No 164
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=5.6e-13 Score=98.71 Aligned_cols=121 Identities=17% Similarity=0.214 Sum_probs=84.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH-HHH
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIK-RFL 115 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~-~~~ 115 (243)
-+||+++|..|+|||.|+..++..- ++++.....+.+......+++| .++++|||+|+.. ++.+. .|.
T Consensus 7 lfkivlvgnagvgktclvrrftqgl-fppgqgatigvdfmiktvev~gekiklqiwdtagqer--------frsitqsyy 77 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQER--------FRSITQSYY 77 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccC-CCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHH--------HHHHHHHHh
Confidence 3799999999999999999988553 4444444444444444555555 4799999999943 33332 222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 172 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~ 172 (243)
+.+|++++|+++.-....+-.-+|+..+.+..... .-.|+|+||.|+.+.++.
T Consensus 78 --rsahalilvydiscqpsfdclpewlreie~yan~k--vlkilvgnk~d~~drrev 130 (213)
T KOG0095|consen 78 --RSAHALILVYDISCQPSFDCLPEWLREIEQYANNK--VLKILVGNKIDLADRREV 130 (213)
T ss_pred --hhcceEEEEEecccCcchhhhHHHHHHHHHHhhcc--eEEEeeccccchhhhhhh
Confidence 48999999988864333344567888888876554 367999999998755443
No 165
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.51 E-value=2e-13 Score=105.09 Aligned_cols=112 Identities=12% Similarity=0.174 Sum_probs=69.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 120 (243)
||+++|.+|+|||||++++...... ...++ ...........+..+.+|||||..+. ....+.++ .++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~~~t--~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~--~~~ 67 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TTIPT--IGFNVETVTYKNLKFQVWDLGGQTSI-------RPYWRCYY--SNT 67 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--CcCCc--cCcCeEEEEECCEEEEEEECCCCHHH-------HHHHHHHh--cCC
Confidence 6899999999999999999766532 22222 11222334456789999999998422 11122233 489
Q ss_pred cEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 121 DVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 121 ~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
|++++|++.+... +......+...+... . ....|+++|+||+|+.
T Consensus 68 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~-~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 68 DAIIYVVDSTDRDRLGTAKEELHAMLEEE-E-LKGAVLLVFANKQDMP 113 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhch-h-hcCCcEEEEEeCCCCC
Confidence 9999998775422 211122222222221 1 1236999999999985
No 166
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.51 E-value=7.4e-13 Score=105.64 Aligned_cols=113 Identities=14% Similarity=0.138 Sum_probs=70.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCC---------------CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTF---------------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 104 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~---------------~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~ 104 (243)
.+|+++|.+|+|||||+|++++......... .+.+...........+..+.+|||||+.+.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~---- 78 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADF---- 78 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHH----
Confidence 4899999999999999999996321111110 112222233345567789999999998532
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 105 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
......++ .++|++++|+++... .......++..+.. . ..|+++|+||+|+.
T Consensus 79 ---~~~~~~~~--~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~---~--~~p~iiv~NK~Dl~ 130 (194)
T cd01891 79 ---GGEVERVL--SMVDGVLLLVDASEG-PMPQTRFVLKKALE---L--GLKPIVVINKIDRP 130 (194)
T ss_pred ---HHHHHHHH--HhcCEEEEEEECCCC-ccHHHHHHHHHHHH---c--CCCEEEEEECCCCC
Confidence 11222233 489999999777542 22222333333222 1 36899999999985
No 167
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.51 E-value=1.7e-13 Score=112.94 Aligned_cols=127 Identities=21% Similarity=0.268 Sum_probs=92.8
Q ss_pred cCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHH-----H
Q 026113 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAI-----Q 109 (243)
Q Consensus 35 ~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~-----~ 109 (243)
+..+.++|+++|.+|+|||||.|.+.|..++.++....+|............-++.++||||+........... +
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 34567999999999999999999999999999988888887777777777788999999999986654433211 1
Q ss_pred HHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 110 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 110 ~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
..++ ....+|+|++++++.+.+ ....-+.++.+.+.. ..|-++|+||.|...
T Consensus 148 ~~~~--a~q~AD~vvVv~Das~tr-~~l~p~vl~~l~~ys----~ips~lvmnkid~~k 199 (379)
T KOG1423|consen 148 NPRD--AAQNADCVVVVVDASATR-TPLHPRVLHMLEEYS----KIPSILVMNKIDKLK 199 (379)
T ss_pred CHHH--HHhhCCEEEEEEeccCCc-CccChHHHHHHHHHh----cCCceeeccchhcch
Confidence 1122 225899999998776433 233344454444432 259999999999863
No 168
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.51 E-value=4.5e-13 Score=105.67 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=71.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccC---------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY 105 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~ 105 (243)
+|+++|.+|+|||||+|++++........ ....+...........+..+.+|||||+.+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF----- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence 58999999999999999999876432110 1112222223344556778999999998532
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 106 ~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
......++ ..+|++++|++.... .......++..+.. ...|+++|+||+|+.
T Consensus 76 --~~~~~~~~--~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~ 127 (189)
T cd00881 76 --SSEVIRGL--SVSDGAILVVDANEG-VQPQTREHLRIARE-----GGLPIIVAINKIDRV 127 (189)
T ss_pred --HHHHHHHH--HhcCEEEEEEECCCC-CcHHHHHHHHHHHH-----CCCCeEEEEECCCCc
Confidence 11222222 389999999776532 23334444444433 237999999999986
No 169
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.51 E-value=9.4e-14 Score=112.15 Aligned_cols=113 Identities=15% Similarity=0.112 Sum_probs=70.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccc------------------------------CCCCCCCeeEEEEeeeCCeEEE
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVS------------------------------TFQSEGPRPVMVSRSRAGFTLN 90 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~~~~ 90 (243)
||+++|.+|+|||||+++|++..-.... .....|.........+.+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999865322110 0022333444445567888999
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 91 IVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 91 viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+|||||+.+ ....+...+ ..+|++|+|++.... ...........+ ...+. .++|+|+||+|+.
T Consensus 81 liDTpG~~~-------~~~~~~~~~--~~ad~~llVvD~~~~-~~~~~~~~~~~~-~~~~~---~~iIvviNK~D~~ 143 (208)
T cd04166 81 IADTPGHEQ-------YTRNMVTGA--STADLAILLVDARKG-VLEQTRRHSYIL-SLLGI---RHVVVAVNKMDLV 143 (208)
T ss_pred EEECCcHHH-------HHHHHHHhh--hhCCEEEEEEECCCC-ccHhHHHHHHHH-HHcCC---CcEEEEEEchhcc
Confidence 999999732 111222222 489999999776532 333333333322 22331 4688899999985
No 170
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.51 E-value=2.8e-13 Score=104.29 Aligned_cols=112 Identities=20% Similarity=0.202 Sum_probs=67.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~ 119 (243)
+|+++|.+|+|||||+|.+.+..... ..++.. ........ .+..+.+|||||.... ......++ .+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~--~~~t~~--~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~~~~--~~ 67 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT--TIPTVG--FNVEMLQLEKHLSLTVWDVGGQEKM-------RTVWKCYL--EN 67 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc--ccCccC--cceEEEEeCCceEEEEEECCCCHhH-------HHHHHHHh--cc
Confidence 58999999999999999999887432 222221 11122222 3468999999998421 11122222 47
Q ss_pred CcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 120 IDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 120 ~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+|++++|++..... +... ..++..+.+... ....|+++|+||+|+.
T Consensus 68 ~~~iv~v~D~~~~~~~~~~-~~~~~~~~~~~~-~~~~piilv~nK~Dl~ 114 (160)
T cd04156 68 TDGLVYVVDSSDEARLDES-QKELKHILKNEH-IKGVPVVLLANKQDLP 114 (160)
T ss_pred CCEEEEEEECCcHHHHHHH-HHHHHHHHhchh-hcCCCEEEEEECcccc
Confidence 89999997765422 2222 222322222111 1237999999999984
No 171
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.51 E-value=2.2e-13 Score=106.51 Aligned_cols=114 Identities=15% Similarity=0.156 Sum_probs=71.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
.||+++|.+|+|||||++.+++... .....++. ..........++ ..+.+|||||..+...... .+ .
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~-~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~--~ 70 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDRLRP-------LS--Y 70 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcc-ccceEEEEEECCEEEEEEEEeCCCchhhhhccc-------cc--c
Confidence 5899999999999999999998763 21111221 111122333444 3689999999854322211 11 1
Q ss_pred CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++... +......++..+.+..+ ..|+++|+||+|+.
T Consensus 71 ~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 118 (175)
T cd01870 71 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLR 118 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhcc
Confidence 5889999998887532 22222345555554322 36999999999985
No 172
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.51 E-value=4.7e-13 Score=105.23 Aligned_cols=119 Identities=22% Similarity=0.197 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
.||+++|.+|+|||||++++++... .....+ ++...........+ ..+.+|||||..+.... ...++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~-t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~~~-- 70 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-VESYYP-TIENTFSKIIRYKGQDYHLEIVDTAGQDEYSIL-------PQKYS-- 70 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-ccccCc-chhhhEEEEEEECCEEEEEEEEECCChHhhHHH-------HHHHH--
Confidence 6899999999999999999997763 222222 22222222333443 46789999998532111 11122
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~ 170 (243)
..+|++++|++++.....+....+...+....+. ...|+++|+||+|+...+
T Consensus 71 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~ 122 (180)
T cd04137 71 IGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHTQR 122 (180)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhhcC
Confidence 4789999998876533223334444444444332 236999999999986433
No 173
>PLN00023 GTP-binding protein; Provisional
Probab=99.51 E-value=4.8e-13 Score=113.17 Aligned_cols=121 Identities=17% Similarity=0.198 Sum_probs=78.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---------------CeEEEEEeCCCCCCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---------------GFTLNIVDTPGLIEGGY 102 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~viDTPG~~~~~~ 102 (243)
..+||+++|..|+|||||++.+.+... .....++.+.........+. ...+.||||+|.....
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F-~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr- 97 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSS-IARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK- 97 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCc-ccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh-
Confidence 569999999999999999999997753 22222222222222222221 2469999999985332
Q ss_pred CcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc----------cccccEEEEEeCCCCCC
Q 026113 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE----------QIWKRALIVLTHAQLSL 168 (243)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~----------~~~~~~ivV~tk~D~~~ 168 (243)
.+...+ ..+++++|+|++++.....+....|++.+...... ....|++||+||+|+.+
T Consensus 98 -------sL~~~y-yr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 98 -------DCRSLF-YSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred -------hhhHHh-ccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 222211 15899999999987644334456777777765320 11258999999999964
No 174
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.50 E-value=7.4e-13 Score=102.30 Aligned_cols=110 Identities=17% Similarity=0.102 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+||+++|.+|+|||||++.++.... . ...++. ..........++ ..+.+|||+|..+ . ...
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f-~-~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~---~~~------ 63 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSY-V-QLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----A---QFA------ 63 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCC-C-CCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----h---hHH------
Confidence 5899999999999999999886642 1 112221 112223345566 4689999999942 1 112
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+|++++|++++.....+....+++.+...... ...|+++|+||.|+.
T Consensus 64 ~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~ 112 (158)
T cd04103 64 SWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNI-SEIPLILVGTQDAIS 112 (158)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeeHHHhh
Confidence 3789999999987644333335677777665421 236999999999984
No 175
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.49 E-value=9.8e-13 Score=105.81 Aligned_cols=114 Identities=20% Similarity=0.223 Sum_probs=66.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee--eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS--RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~ 118 (243)
+|+++|.+|+|||||++.+.+.... ...++.+......... ..+..+.+|||||.... ... +..++ .
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~--~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~---~~~----~~~~~--~ 70 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYR--STVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKL---RDK----LLETL--K 70 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC--CccCcEeecceEEEeecCCCCceEEEEECCCCHHH---HHH----HHHHH--h
Confidence 6899999999999999999987532 1222221111111111 23678999999998532 122 22222 2
Q ss_pred CC-cEEEEEEeCCCcccChhHHHHHHHHHHHh----cccccccEEEEEeCCCCC
Q 026113 119 TI-DVLLYVDRLDVYRVDNLDKQITRAITDNF----GEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 119 ~~-~~il~v~~~d~~~~~~~~~~~l~~l~~~~----~~~~~~~~ivV~tk~D~~ 167 (243)
++ +++++|++.... ........+++...+ ......|+++|.||+|+.
T Consensus 71 ~~~~~vV~VvD~~~~--~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~ 122 (203)
T cd04105 71 NSAKGIVFVVDSATF--QKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLF 122 (203)
T ss_pred ccCCEEEEEEECccc--hhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhc
Confidence 55 999999776532 122222222222221 111247999999999986
No 176
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.48 E-value=2.4e-13 Score=108.44 Aligned_cols=147 Identities=20% Similarity=0.162 Sum_probs=94.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
...||+++|.+|+|||+|+..+++... +..+.++..+........++. .+.|+||+|+.+.....+ .++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f--~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~---~~~---- 72 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRF--VEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRD---LYI---- 72 (196)
T ss_pred CceEEEEECCCCCCcchheeeeccccc--ccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHH---Hhh----
Confidence 468999999999999999999988873 344444443444444444444 688999999644322211 122
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHhhhHHHHHHHccccCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (243)
...|++++|+++++....+....+.+.+.+..+.. +.|+++|+||+|+...+.++.++-..-.......+++.+.+.
T Consensus 73 --~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~-~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~ 149 (196)
T KOG0395|consen 73 --RNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRD-DVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKL 149 (196)
T ss_pred --ccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcC-CCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccC
Confidence 47899999999987544455566666665544433 369999999999976566666653322122222245555444
Q ss_pred c
Q 026113 196 K 196 (243)
Q Consensus 196 ~ 196 (243)
+
T Consensus 150 ~ 150 (196)
T KOG0395|consen 150 N 150 (196)
T ss_pred C
Confidence 3
No 177
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.48 E-value=1.6e-12 Score=109.98 Aligned_cols=125 Identities=21% Similarity=0.345 Sum_probs=84.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccccc---CCCC----CCCeeEEE--EeeeCCe--EEEEEeCCCCCCCCCCcH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS---TFQS----EGPRPVMV--SRSRAGF--TLNIVDTPGLIEGGYVNY 105 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~---~~~~----~t~~~~~~--~~~~~~~--~~~viDTPG~~~~~~~~~ 105 (243)
.-+++|+++|.+|.||||++|+|++....... +..+ .+...... ...-+|. .+.|+||||++|.-....
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 46899999999999999999999998533221 1111 11111111 2222343 799999999997533211
Q ss_pred ---HHHHHH----HHHH------------hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113 106 ---HAIQLI----KRFL------------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (243)
Q Consensus 106 ---~~~~~~----~~~~------------~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 166 (243)
-+..++ ..|+ .+..+|++||+++.....+.+.|..+++.+.+. .++|-|+.|+|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeeeecccc
Confidence 112222 1222 235789999998887777889999988888876 699999999998
Q ss_pred C
Q 026113 167 S 167 (243)
Q Consensus 167 ~ 167 (243)
.
T Consensus 175 l 175 (373)
T COG5019 175 L 175 (373)
T ss_pred C
Confidence 7
No 178
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.48 E-value=9.3e-13 Score=104.91 Aligned_cols=113 Identities=19% Similarity=0.178 Sum_probs=66.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC------cccccCCCCCCCeeEEEEeee--------------CCeEEEEEeCCCCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK------AVTVSTFQSEGPRPVMVSRSR--------------AGFTLNIVDTPGLIE 99 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~------~~~~~~~~~~t~~~~~~~~~~--------------~~~~~~viDTPG~~~ 99 (243)
++|+++|.+|+|||||++++++.. .......+..|.........+ .+..+.+|||||+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~- 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA- 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence 489999999999999999999731 111111122333322222222 26689999999983
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
...+.+.. ....+|++++|++.... ........+.. .... ..|+++|+||+|+.
T Consensus 80 ------~~~~~~~~--~~~~~d~vi~VvD~~~~-~~~~~~~~~~~-~~~~----~~~~iiv~NK~Dl~ 133 (192)
T cd01889 80 ------SLIRTIIG--GAQIIDLMLLVVDATKG-IQTQTAECLVI-GEIL----CKKLIVVLNKIDLI 133 (192)
T ss_pred ------HHHHHHHH--HHhhCCEEEEEEECCCC-ccHHHHHHHHH-HHHc----CCCEEEEEECcccC
Confidence 11112211 12478999999776431 22223222322 2222 25999999999985
No 179
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.48 E-value=9.6e-13 Score=100.40 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=68.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCc
Q 026113 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 121 (243)
Q Consensus 42 IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (243)
|+++|.+|+|||||+|.+.+... .....++.+. ........+..+.+|||||... .......++ ..+|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~--~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~--~~~d 69 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF-SEDTIPTVGF--NMRKVTKGNVTLKVWDLGGQPR-------FRSMWERYC--RGVN 69 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC-CcCccCCCCc--ceEEEEECCEEEEEEECCCCHh-------HHHHHHHHH--hcCC
Confidence 78999999999999999998863 2222222222 2223345567899999999732 112222333 4889
Q ss_pred EEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 122 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 122 ~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
++++|+++...........++..+..... ....|+++|+||+|+.
T Consensus 70 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~ 114 (159)
T cd04159 70 AIVYVVDAADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLP 114 (159)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCcccc
Confidence 99999776542111111222222222111 1236999999999975
No 180
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.47 E-value=2.4e-12 Score=99.21 Aligned_cols=118 Identities=19% Similarity=0.173 Sum_probs=72.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCc-ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHHh
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKA-VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLL 116 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~---~~~~~~~~~~~~ 116 (243)
.|+++|.+|+|||||+|.|++... ...+..+..+..... .... ..+.+|||||+.+..... +.....+..++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 379999999999999999995432 223333333332222 2222 389999999987653321 122233334443
Q ss_pred -cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 -NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 -~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
....++++++++.+.. .........+++... ..|+++|+||+|+.
T Consensus 78 ~~~~~~~~~~v~d~~~~-~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~ 123 (170)
T cd01876 78 NRENLKGVVLLIDSRHG-PTEIDLEMLDWLEEL-----GIPFLVVLTKADKL 123 (170)
T ss_pred hChhhhEEEEEEEcCcC-CCHhHHHHHHHHHHc-----CCCEEEEEEchhcC
Confidence 2357888888666532 334445555555543 26999999999985
No 181
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.47 E-value=3.9e-13 Score=104.55 Aligned_cols=113 Identities=22% Similarity=0.325 Sum_probs=69.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEE----------------------------------------
Q 026113 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS---------------------------------------- 81 (243)
Q Consensus 42 IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~---------------------------------------- 81 (243)
|+++|..++|||||+|+|+|..+.+.+..+.+........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 7899999999999999999998655444332222110000
Q ss_pred ---------------eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHH
Q 026113 82 ---------------RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAIT 146 (243)
Q Consensus 82 ---------------~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~ 146 (243)
.......+.++||||+.+......+ .+.+++ +.+|++|+|.+.+. .....+...+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~---~~~~~~--~~~d~vi~V~~~~~-~~~~~~~~~l~~~~ 154 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTE---ITEEYL--PKADVVIFVVDANQ-DLTESDMEFLKQML 154 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSH---HHHHHH--STTEEEEEEEETTS-TGGGHHHHHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHH---HHHHhh--ccCCEEEEEeccCc-ccchHHHHHHHHHh
Confidence 0011224899999999764443332 334444 68999999977764 24444555444444
Q ss_pred HHhcccccccEEEEEeCC
Q 026113 147 DNFGEQIWKRALIVLTHA 164 (243)
Q Consensus 147 ~~~~~~~~~~~ivV~tk~ 164 (243)
.... ..+++|+||+
T Consensus 155 ~~~~----~~~i~V~nk~ 168 (168)
T PF00350_consen 155 DPDK----SRTIFVLNKA 168 (168)
T ss_dssp TTTC----SSEEEEEE-G
T ss_pred cCCC----CeEEEEEcCC
Confidence 3322 4699999985
No 182
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=8.9e-13 Score=97.42 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=88.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEe-e-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR-S-RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~-~-~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+||+++|.+.+||||++-+.++... ...-....+.+...... . -...++++|||+|+.. .+.+... .
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSF-t~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEr--------yrtiTTa-y 90 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQER--------YRTITTA-Y 90 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhcccc-ccceeeeeeeeEEEeEeeecccEEEEEEEecccchh--------hhHHHHH-H
Confidence 47999999999999999999998863 22111112222211111 1 1235899999999953 2222211 1
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHhhhHHHHHHHccccCCc
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMK 196 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 196 (243)
.++++++|+++++.+.........|.-.+....-.+ .++|+|.||||+.+++..+.+.-..-..+--.++.+.++..+
T Consensus 91 yRgamgfiLmyDitNeeSf~svqdw~tqIktysw~n--aqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~N 168 (193)
T KOG0093|consen 91 YRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDN--AQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKEN 168 (193)
T ss_pred hhccceEEEEEecCCHHHHHHHHHHHHHheeeeccC--ceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhccccc
Confidence 259999999988865433344455555555443223 489999999999766555555433222222234555555544
Q ss_pred cc
Q 026113 197 KK 198 (243)
Q Consensus 197 ~~ 198 (243)
.+
T Consensus 169 in 170 (193)
T KOG0093|consen 169 IN 170 (193)
T ss_pred cc
Confidence 43
No 183
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=2.4e-12 Score=109.73 Aligned_cols=142 Identities=19% Similarity=0.270 Sum_probs=92.2
Q ss_pred cccccCChhhHHHHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccC------CCCCCCeeE--EEEee
Q 026113 12 MGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST------FQSEGPRPV--MVSRS 83 (243)
Q Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~------~~~~t~~~~--~~~~~ 83 (243)
-|..++|++... +..+++ -.++++++|++|.|||||+|+|++........ .+..+.... .....
T Consensus 2 vg~~~lP~q~~r-------~~~KkG-~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~ie 73 (366)
T KOG2655|consen 2 VGFANLPNQVHR-------KSVKKG-FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIE 73 (366)
T ss_pred CccccChHHHHH-------HHHhcC-CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeec
Confidence 456677777522 233333 57999999999999999999999885432111 111111111 12222
Q ss_pred eCCe--EEEEEeCCCCCCCCCCcH-------HHHHHHHHHHh-----------cCCCcEEEEEEeCCCcccChhHHHHHH
Q 026113 84 RAGF--TLNIVDTPGLIEGGYVNY-------HAIQLIKRFLL-----------NKTIDVLLYVDRLDVYRVDNLDKQITR 143 (243)
Q Consensus 84 ~~~~--~~~viDTPG~~~~~~~~~-------~~~~~~~~~~~-----------~~~~~~il~v~~~d~~~~~~~~~~~l~ 143 (243)
-+|. +++|+||||++|.-.... -..+....|+. +..+|++||.++.....+...|..+++
T Consensus 74 e~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk 153 (366)
T KOG2655|consen 74 ENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMK 153 (366)
T ss_pred CCCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHH
Confidence 3344 789999999997532211 11222233332 347899999988776568888888888
Q ss_pred HHHHHhcccccccEEEEEeCCCCC
Q 026113 144 AITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 144 ~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.+.+. .++|-|+.|+|..
T Consensus 154 ~l~~~------vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 154 KLSKK------VNLIPVIAKADTL 171 (366)
T ss_pred HHhcc------ccccceeeccccC
Confidence 87775 5999999999986
No 184
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.47 E-value=6.2e-13 Score=117.85 Aligned_cols=131 Identities=22% Similarity=0.250 Sum_probs=93.8
Q ss_pred cCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCC-eeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026113 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP-RPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKR 113 (243)
Q Consensus 35 ~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~ 113 (243)
...+++||+++|..|+||||||-+++..+.. ...|..-. .........+..+..++||+.-. ..+....++++
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~--~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~---~~~~~l~~Eir- 78 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFV--DAVPRRLPRILIPADVTPENVPTSIVDTSSDS---DDRLCLRKEIR- 78 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhcc--ccccccCCccccCCccCcCcCceEEEeccccc---chhHHHHHHHh-
Confidence 3457899999999999999999999988732 22222111 11112233455678999998432 22233455565
Q ss_pred HHhcCCCcEEEEEEeCCC-cccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHH
Q 026113 114 FLLNKTIDVLLYVDRLDV-YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (243)
Q Consensus 114 ~~~~~~~~~il~v~~~d~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~ 176 (243)
.+|+|++|+..|. .+.......||..+++.+|.....|+|+|+||+|+.+....+.+.
T Consensus 79 -----kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~ 137 (625)
T KOG1707|consen 79 -----KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEV 137 (625)
T ss_pred -----hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhH
Confidence 8999999998876 447777889999999999998889999999999997655554444
No 185
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.46 E-value=1.1e-12 Score=104.00 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
.||+++|.+|+|||||++.+....... ....+............+ ..+.+|||||.......... .+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~---~~------ 70 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPL---SY------ 70 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchh---hc------
Confidence 589999999999999999998554211 111111111222233344 35889999998544322211 11
Q ss_pred CCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+|++++|++++... +.+....|+..+....+ ..|+++|+||+|+.
T Consensus 71 ~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~---~~piilvgnK~Dl~ 118 (187)
T cd04129 71 SKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP---NVPVILVGLKKDLR 118 (187)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhh
Confidence 4889999999887543 32333457777766543 27999999999984
No 186
>COG2262 HflX GTPases [General function prediction only]
Probab=99.45 E-value=2.7e-12 Score=110.12 Aligned_cols=127 Identities=19% Similarity=0.192 Sum_probs=87.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.-..|.++|.||+|||||.|+|++..+. +.+.-..|-+++....... |..+.+-||-||. ........+.++..+.
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~-~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI--~~LP~~LV~AFksTLE 267 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVY-VADQLFATLDPTTRRIELGDGRKVLLTDTVGFI--RDLPHPLVEAFKSTLE 267 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCee-ccccccccccCceeEEEeCCCceEEEecCccCc--ccCChHHHHHHHHHHH
Confidence 4479999999999999999999988864 3444445666666666555 7899999999996 4455566666666553
Q ss_pred -cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 117 -NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 117 -~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
...+|++|+|++.......+........+.+ .|-.- .|+|+|+||+|+.+.
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~e-l~~~~-~p~i~v~NKiD~~~~ 319 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAE-IGADE-IPIILVLNKIDLLED 319 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHHH-cCCCC-CCEEEEEecccccCc
Confidence 3689999999666443222222333333333 33222 699999999997633
No 187
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.45 E-value=1.6e-12 Score=103.82 Aligned_cols=115 Identities=15% Similarity=0.068 Sum_probs=72.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcc------ccc---------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAV------TVS---------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~------~~~---------~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~ 103 (243)
.++|+++|..++|||||+++|++.... ... ...+.|.........+.+..+.++||||+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~----- 76 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA----- 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH-----
Confidence 579999999999999999999864100 000 012223333333445677889999999984
Q ss_pred cHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.....+...+ ..+|++++|++... .........+..+... +. .++|+|+||+|+.
T Consensus 77 --~~~~~~~~~~--~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~-~~---~~iIvviNK~D~~ 131 (195)
T cd01884 77 --DYIKNMITGA--AQMDGAILVVSATD-GPMPQTREHLLLARQV-GV---PYIVVFLNKADMV 131 (195)
T ss_pred --HHHHHHHHHh--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CcEEEEEeCCCCC
Confidence 2222333222 48999999977653 2445555555554432 31 2488999999985
No 188
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.45 E-value=8.1e-13 Score=105.60 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=70.1
Q ss_pred ceEEEEEcCCCCcHHHHHH-HHhCCCc----ccccCCCCCCC-eeEE-E-------EeeeCC--eEEEEEeCCCCCCCCC
Q 026113 39 TLTILVMGKGGVGKSSTVN-SIIGEKA----VTVSTFQSEGP-RPVM-V-------SRSRAG--FTLNIVDTPGLIEGGY 102 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin-~llg~~~----~~~~~~~~~t~-~~~~-~-------~~~~~~--~~~~viDTPG~~~~~~ 102 (243)
.+||+++|.+|+|||||++ .+.+... +.....|+... .... . ....+| ..+.+|||||..+.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999996 4444321 11111121110 1111 1 012333 47999999999531
Q ss_pred CcHHHHHHHHHHHhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
++. ....++|++++|++++... +......|++.+..... ..|+++|+||+|+.+
T Consensus 80 --------~~~-~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~---~~piilvgNK~DL~~ 134 (195)
T cd01873 80 --------DRR-FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP---RVPVILVGCKLDLRY 134 (195)
T ss_pred --------hhc-ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhccc
Confidence 111 1125999999999986543 32222357777766532 269999999999853
No 189
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.43 E-value=1.1e-12 Score=102.94 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=65.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccc-----cCC---------CCCCCeeEEEEe-----eeCCeEEEEEeCCCCCCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTV-----STF---------QSEGPRPVMVSR-----SRAGFTLNIVDTPGLIEGG 101 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~-----~~~---------~~~t~~~~~~~~-----~~~~~~~~viDTPG~~~~~ 101 (243)
+|+++|.+|+|||||++++++...... ..+ .+.+........ ...+..+.+|||||+.+..
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 689999999999999999997431110 000 011111111112 1235578899999996431
Q ss_pred CCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+..++ .++|++++|+++... ........+..+. .. ..|+++|+||+|+.
T Consensus 82 -------~~~~~~~--~~ad~~i~v~D~~~~-~~~~~~~~~~~~~---~~--~~~iiiv~NK~Dl~ 132 (179)
T cd01890 82 -------YEVSRSL--AACEGALLLVDATQG-VEAQTLANFYLAL---EN--NLEIIPVINKIDLP 132 (179)
T ss_pred -------HHHHHHH--HhcCeEEEEEECCCC-ccHhhHHHHHHHH---Hc--CCCEEEEEECCCCC
Confidence 1222333 379999999776531 2222222222222 11 26899999999984
No 190
>PRK09866 hypothetical protein; Provisional
Probab=99.42 E-value=1.5e-11 Score=111.46 Aligned_cols=73 Identities=21% Similarity=0.243 Sum_probs=49.4
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (243)
Q Consensus 87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 166 (243)
.++.++||||+..+... ...+.+.+.+ ..+|+||||++.+. ..+..+..+++.+++. ++ ..|+++|+||+|.
T Consensus 230 ~QIIFVDTPGIhk~~~~--~L~k~M~eqL--~eADvVLFVVDat~-~~s~~DeeIlk~Lkk~-~K--~~PVILVVNKIDl 301 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQP--HLQKMLNQQL--ARASAVLAVLDYTQ-LKSISDEEVREAILAV-GQ--SVPLYVLVNKFDQ 301 (741)
T ss_pred CCEEEEECCCCCCccch--HHHHHHHHHH--hhCCEEEEEEeCCC-CCChhHHHHHHHHHhc-CC--CCCEEEEEEcccC
Confidence 36889999999754322 1222333333 48999999976653 2566777777777653 22 1499999999998
Q ss_pred C
Q 026113 167 S 167 (243)
Q Consensus 167 ~ 167 (243)
.
T Consensus 302 ~ 302 (741)
T PRK09866 302 Q 302 (741)
T ss_pred C
Confidence 5
No 191
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.42 E-value=2.3e-12 Score=114.89 Aligned_cols=118 Identities=16% Similarity=0.125 Sum_probs=75.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccc------------------------------cCCCCCCCeeEEEEeeeCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTV------------------------------STFQSEGPRPVMVSRSRAG 86 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~ 86 (243)
+..++|+++|..++|||||+++|++...... ...++.|.+.........+
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 3679999999999999999999995432110 0123445555555666788
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCc-ccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (243)
Q Consensus 87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 165 (243)
..+.+|||||..+. .......+ ..+|++++|++.+.. .........+..+ ..++. .++++|+||+|
T Consensus 84 ~~i~liDtpG~~~~---~~~~~~~~------~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~~~~---~~iivviNK~D 150 (425)
T PRK12317 84 YYFTIVDCPGHRDF---VKNMITGA------SQADAAVLVVAADDAGGVMPQTREHVFLA-RTLGI---NQLIVAINKMD 150 (425)
T ss_pred eEEEEEECCCcccc---hhhHhhch------hcCCEEEEEEEcccCCCCCcchHHHHHHH-HHcCC---CeEEEEEEccc
Confidence 89999999997432 11111111 489999999887541 1223333333333 33332 47999999999
Q ss_pred CC
Q 026113 166 LS 167 (243)
Q Consensus 166 ~~ 167 (243)
+.
T Consensus 151 l~ 152 (425)
T PRK12317 151 AV 152 (425)
T ss_pred cc
Confidence 85
No 192
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.42 E-value=8.4e-12 Score=99.10 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=76.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccc-----------------ccCCCCCCCeeEEEEee--eCCeEEEEEeCCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT-----------------VSTFQSEGPRPVMVSRS--RAGFTLNIVDTPGLI 98 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~-----------------~~~~~~~t~~~~~~~~~--~~~~~~~viDTPG~~ 98 (243)
+-.+|+++|..++|||||+++|++..... .......|......... ..+..+.++||||..
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 45899999999999999999999553110 00112234444445555 788999999999983
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+....+...+ ..+|++++|++... .........+..+... ..|+++|+||+|+.
T Consensus 82 -------~f~~~~~~~~--~~~D~ailvVda~~-g~~~~~~~~l~~~~~~-----~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 82 -------DFIKEMIRGL--RQADIAILVVDAND-GIQPQTEEHLKILREL-----GIPIIVVLNKMDLI 135 (188)
T ss_dssp -------HHHHHHHHHH--TTSSEEEEEEETTT-BSTHHHHHHHHHHHHT-----T-SEEEEEETCTSS
T ss_pred -------ceeeccccee--cccccceeeeeccc-cccccccccccccccc-----ccceEEeeeeccch
Confidence 2233333333 58999999977754 2445555555555443 25899999999985
No 193
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.42 E-value=1.1e-12 Score=100.46 Aligned_cols=121 Identities=16% Similarity=0.119 Sum_probs=81.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...|||+++|.+|+|||||.|.+...+. ........+.+.......++++ .+++|||+|+....... -
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF-~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg--------~- 76 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKF-SQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLG--------V- 76 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHH-HHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcc--------c-
Confidence 3579999999999999999999998763 2222233333444445556665 68999999995433222 1
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc-cc-ccccEEEEEeCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG-EQ-IWKRALIVLTHAQLS 167 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~-~~-~~~~~ivV~tk~D~~ 167 (243)
..-+++|.+++|++++.....+....|-+.+..... .+ -.-|+||++||.|+.
T Consensus 77 aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~ 131 (210)
T KOG0394|consen 77 AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVD 131 (210)
T ss_pred ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCC
Confidence 112699999999999876544445555555544433 11 224899999999984
No 194
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.42 E-value=7.4e-12 Score=102.97 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=70.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccc-----ccCC------------CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVT-----VSTF------------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~-----~~~~------------~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~ 103 (243)
+|+++|..|+|||||+++|+...-.. +... ...+.........+.+.++.+|||||+.+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f--- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF--- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch---
Confidence 58999999999999999998642111 0000 011112233455678889999999999643
Q ss_pred cHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+....+ ..+|++++|++... ........+.+.+.+ . ..|+++++||+|+.
T Consensus 78 ~~~~~~~l------~~aD~~IlVvd~~~-g~~~~~~~~~~~~~~-~----~~P~iivvNK~D~~ 129 (237)
T cd04168 78 IAEVERSL------SVLDGAILVISAVE-GVQAQTRILWRLLRK-L----NIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHH------HHhCeEEEEEeCCC-CCCHHHHHHHHHHHH-c----CCCEEEEEECcccc
Confidence 22222233 37899999977653 233333444444333 2 36999999999975
No 195
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.42 E-value=1.9e-12 Score=119.18 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=77.1
Q ss_pred cCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEE
Q 026113 46 GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLY 125 (243)
Q Consensus 46 G~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 125 (243)
|.+|+|||||+|+++|... .+++.++.|.+.......+++.++.+|||||+.+......+ .+..+.++....+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~-e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLE-EEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchH-HHHHHHHHhhcCCCEEEE
Confidence 8999999999999999874 56777777776666666778889999999999765432211 112333444468999999
Q ss_pred EEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 126 VDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 126 v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
|++.+ .... . +....+.... ..|+++|+||+|+.+
T Consensus 79 VvDat--~ler-~---l~l~~ql~~~--~~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 79 VVDAS--NLER-N---LYLTLQLLEL--GIPMILALNLVDEAE 113 (591)
T ss_pred EecCC--cchh-h---HHHHHHHHhc--CCCEEEEEehhHHHH
Confidence 95543 3322 2 2222222222 369999999999853
No 196
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.41 E-value=1.2e-12 Score=98.93 Aligned_cols=100 Identities=19% Similarity=0.256 Sum_probs=62.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 120 (243)
||+++|.+|+|||||+|++.+.... .. .|. ...+.+ .+|||||... ......+.+... ..++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~-~t~-----~~~~~~---~~iDt~G~~~---~~~~~~~~~~~~--~~~a 63 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YK-KTQ-----AVEYND---GAIDTPGEYV---ENRRLYSALIVT--AADA 63 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cc-cce-----eEEEcC---eeecCchhhh---hhHHHHHHHHHH--hhcC
Confidence 7999999999999999999988631 11 111 112222 6899999731 112223323222 2599
Q ss_pred cEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 121 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
|++++|++++...... ...+.+ .++ .|+++|+||+|+.
T Consensus 64 d~vilv~d~~~~~s~~-~~~~~~----~~~----~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 64 DVIALVQSATDPESRF-PPGFAS----IFV----KPVIGLVTKIDLA 101 (142)
T ss_pred CEEEEEecCCCCCcCC-ChhHHH----hcc----CCeEEEEEeeccC
Confidence 9999998875432111 122222 222 4999999999985
No 197
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.41 E-value=1.2e-12 Score=101.15 Aligned_cols=102 Identities=21% Similarity=0.279 Sum_probs=62.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 120 (243)
+|+++|.+|+|||||+|.|.|.... . ..+ ....+.+. .+|||||+.... ....+.+...+ .++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~-----~~v~~~~~--~~iDtpG~~~~~---~~~~~~~~~~~--~~a 65 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKT-----QAVEFNDK--GDIDTPGEYFSH---PRWYHALITTL--QDV 65 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccc-----eEEEECCC--CcccCCccccCC---HHHHHHHHHHH--hcC
Confidence 7999999999999999999987521 1 111 11122222 269999985432 23333333222 589
Q ss_pred cEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 121 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
|++++|++.+..... ... ++.+. +. .+|+++++||+|+.
T Consensus 66 d~il~v~d~~~~~s~--~~~---~~~~~-~~--~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 66 DMLIYVHGANDPESR--LPA---GLLDI-GV--SKRQIAVISKTDMP 104 (158)
T ss_pred CEEEEEEeCCCcccc--cCH---HHHhc-cC--CCCeEEEEEccccC
Confidence 999999877643211 111 22222 11 26899999999984
No 198
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=2e-12 Score=96.22 Aligned_cols=126 Identities=16% Similarity=0.127 Sum_probs=83.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+|++++|..|+|||.|+..+....... ......+.+.......+.+ .++++|||+|+. ......+.|.
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkD-dssHTiGveFgSrIinVGgK~vKLQIWDTAGQE-------rFRSVtRsYY-- 79 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKD-DSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQE-------RFRSVTRSYY-- 79 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcc-cccceeeeeecceeeeecCcEEEEEEeecccHH-------HHHHHHHHHh--
Confidence 799999999999999999988765321 1111112222222233333 489999999994 2223334444
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHH
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~ 177 (243)
+++...++|+++......+....|+.-.+.+.... .-+++++||.|+.+.+++++.+.
T Consensus 80 RGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n--IvviL~GnKkDL~~~R~VtflEA 137 (214)
T KOG0086|consen 80 RGAAGALLVYDITSRDSFNALTNWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLEA 137 (214)
T ss_pred ccccceEEEEeccchhhHHHHHHHHHHHHhhCCCc--EEEEEeCChhhcChhhhhhHHHH
Confidence 58999999988876444455667777777766543 36888899999977777666544
No 199
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.40 E-value=6e-12 Score=102.00 Aligned_cols=119 Identities=20% Similarity=0.235 Sum_probs=78.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+||+++|..|+|||||++++.+........ +..+........... ...+.+|||+|+.+. ...+..+.
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~-------~~~~~~y~- 75 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYP-PTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY-------RSLRPEYY- 75 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCC-CceeeeeEEEEEEeCCCEEEEEeecCCCHHHH-------HHHHHHHh-
Confidence 4899999999999999999999887432222 211211111111122 457999999999422 22222232
Q ss_pred cCCCcEEEEEEeCCC-cccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 117 NKTIDVLLYVDRLDV-YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 117 ~~~~~~il~v~~~d~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
.+++++++|++... .+..+....|.+.+....+. ..|+++|+||+|+...
T Consensus 76 -~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 76 -RGANGILIVYDSTLRESSDELTEEWLEELRELAPD--DVPILLVGNKIDLFDE 126 (219)
T ss_pred -cCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCC--CceEEEEecccccccc
Confidence 59999999977754 34555566777777776542 2699999999999743
No 200
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.40 E-value=5.6e-12 Score=101.08 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=70.2
Q ss_pred EcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcE
Q 026113 45 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 122 (243)
Q Consensus 45 vG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (243)
+|..|+|||||++++++... .....++............+ ...+.+|||||........ ..++ .++|+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f-~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~-------~~~~--~~ad~ 70 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLR-------DGYY--IQGQC 70 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhh-------HHHh--cCCCE
Confidence 59999999999999996552 22222222222222222333 4589999999995332111 1122 48999
Q ss_pred EEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 123 il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+++|+++......+....|+..+.+... ..|+++|+||+|+.
T Consensus 71 ~ilV~D~t~~~S~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~ 112 (200)
T smart00176 71 AIIMFDVTARVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDVK 112 (200)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccc
Confidence 9999888654322334567777776542 36999999999985
No 201
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.39 E-value=1.3e-11 Score=103.41 Aligned_cols=112 Identities=16% Similarity=0.160 Sum_probs=71.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCc-----cccc------------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKA-----VTVS------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~-----~~~~------------~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~ 103 (243)
+|+++|.+|+|||||+++|+...- ..+. .....|.........+.+..+.+|||||..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df--- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF--- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH---
Confidence 589999999999999999973211 0011 01122333334556788999999999998542
Q ss_pred cHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+ +.+++ ..+|++++|++... .........++.+.+. ..|+++++||+|+.
T Consensus 78 ~~~----~~~~l--~~aD~ailVVDa~~-g~~~~t~~~~~~~~~~-----~~p~ivviNK~D~~ 129 (270)
T cd01886 78 TIE----VERSL--RVLDGAVAVFDAVA-GVEPQTETVWRQADRY-----NVPRIAFVNKMDRT 129 (270)
T ss_pred HHH----HHHHH--HHcCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 122 22222 37899999966543 2344444455444332 26999999999975
No 202
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.38 E-value=8.9e-12 Score=97.90 Aligned_cols=125 Identities=19% Similarity=0.214 Sum_probs=79.2
Q ss_pred HHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 026113 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 107 (243)
Q Consensus 28 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~ 107 (243)
.+.++... .+..+|+++|..||||||+++.+........ .| |...........+..+.+||.+|.... ..
T Consensus 4 ~~~~~~~~-~~~~~ililGl~~sGKTtll~~l~~~~~~~~--~p--T~g~~~~~i~~~~~~~~~~d~gG~~~~---~~-- 73 (175)
T PF00025_consen 4 VLSKLKSK-KKEIKILILGLDGSGKTTLLNRLKNGEISET--IP--TIGFNIEEIKYKGYSLTIWDLGGQESF---RP-- 73 (175)
T ss_dssp HHHHCTTT-TSEEEEEEEESTTSSHHHHHHHHHSSSEEEE--EE--ESSEEEEEEEETTEEEEEEEESSSGGG---GG--
T ss_pred HHHHhccc-CcEEEEEEECCCccchHHHHHHhhhcccccc--Cc--ccccccceeeeCcEEEEEEeccccccc---cc--
Confidence 34444432 4789999999999999999999997654321 12 333445566778999999999997422 11
Q ss_pred HHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 108 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 108 ~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+.++ .++|+++||++........+.+..+..+..... ....|+++++||.|+.
T Consensus 74 --~w~~y~--~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~-~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 74 --LWKSYF--QNADGIIFVVDSSDPERLQEAKEELKELLNDPE-LKDIPILILANKQDLP 128 (175)
T ss_dssp --GGGGGH--TTESEEEEEEETTGGGGHHHHHHHHHHHHTSGG-GTTSEEEEEEESTTST
T ss_pred --cceeec--cccceeEEEEecccceeecccccchhhhcchhh-cccceEEEEecccccc
Confidence 122222 489999999766432211223333333322211 1247999999999974
No 203
>CHL00071 tufA elongation factor Tu
Probab=99.38 E-value=1.2e-11 Score=109.50 Aligned_cols=116 Identities=14% Similarity=0.053 Sum_probs=74.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccc---------------cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTV---------------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~ 101 (243)
+..++|+++|.+++|||||+|+|++...... ....+.|..........++..+.++||||..
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~--- 86 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA--- 86 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH---
Confidence 4679999999999999999999997521100 0012222222223344567789999999973
Q ss_pred CCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc-EEEEEeCCCCC
Q 026113 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS 167 (243)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~ 167 (243)
.....+...+ ..+|++++|++.+. .........+..+.. .+ .| +|+++||+|+.
T Consensus 87 ----~~~~~~~~~~--~~~D~~ilVvda~~-g~~~qt~~~~~~~~~-~g----~~~iIvvvNK~D~~ 141 (409)
T CHL00071 87 ----DYVKNMITGA--AQMDGAILVVSAAD-GPMPQTKEHILLAKQ-VG----VPNIVVFLNKEDQV 141 (409)
T ss_pred ----HHHHHHHHHH--HhCCEEEEEEECCC-CCcHHHHHHHHHHHH-cC----CCEEEEEEEccCCC
Confidence 2333333333 48899999977653 244555555544443 23 35 78999999985
No 204
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.37 E-value=3.5e-12 Score=95.66 Aligned_cols=99 Identities=22% Similarity=0.311 Sum_probs=61.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC-CCCCCcHHHHHHHHHHHhcCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI-EGGYVNYHAIQLIKRFLLNKT 119 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~-~~~~~~~~~~~~~~~~~~~~~ 119 (243)
||+++|++|+|||||+++|.|.... ...|+. ..+.+ .+|||||=+ +.. .....+.. ....
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~-----~~KTq~-----i~~~~---~~IDTPGEyiE~~----~~y~aLi~--ta~d 63 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR-----YKKTQA-----IEYYD---NTIDTPGEYIENP----RFYHALIV--TAQD 63 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC-----cCccce-----eEecc---cEEECChhheeCH----HHHHHHHH--HHhh
Confidence 8999999999999999999997641 111221 11222 259999942 222 22222221 2258
Q ss_pred CcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 120 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+|+|++|.+.+.... .+...|..-+.+|+|-|+||+|+.
T Consensus 64 ad~V~ll~dat~~~~---------~~pP~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 64 ADVVLLLQDATEPRS---------VFPPGFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred CCEEEEEecCCCCCc---------cCCchhhcccCCCEEEEEECccCc
Confidence 999999977654321 111233333447999999999985
No 205
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.37 E-value=2.7e-11 Score=91.25 Aligned_cols=126 Identities=22% Similarity=0.250 Sum_probs=84.6
Q ss_pred HHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 026113 27 ELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH 106 (243)
Q Consensus 27 ~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~ 106 (243)
.++++...+. .+++|+++|..||||||+++.+++.....++ .|.........+.+..+.+||.-|+- .
T Consensus 5 silrk~k~ke-rE~riLiLGLdNsGKTti~~kl~~~~~~~i~----pt~gf~Iktl~~~~~~L~iwDvGGq~-------~ 72 (185)
T KOG0073|consen 5 SILRKQKLKE-REVRILILGLDNSGKTTIVKKLLGEDTDTIS----PTLGFQIKTLEYKGYTLNIWDVGGQK-------T 72 (185)
T ss_pred HHHHHHHhhh-heeEEEEEecCCCCchhHHHHhcCCCccccC----CccceeeEEEEecceEEEEEEcCCcc-------h
Confidence 3455555332 5899999999999999999999999743222 24445566778899999999999983 3
Q ss_pred HHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 107 AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 107 ~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..++.++|+ ...|++++|++.......++....+..+... ..-+..+++++.||.|+.
T Consensus 73 lr~~W~nYf--estdglIwvvDssD~~r~~e~~~~L~~lL~e-erlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 73 LRSYWKNYF--ESTDGLIWVVDSSDRMRMQECKQELTELLVE-ERLAGAPLLVLANKQDLP 130 (185)
T ss_pred hHHHHHHhh--hccCeEEEEEECchHHHHHHHHHHHHHHHhh-hhhcCCceEEEEecCcCc
Confidence 344555665 3889999996653222223333333333220 112446999999999985
No 206
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.36 E-value=2.9e-11 Score=101.14 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=69.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccc-----c----------cCCC------CCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVT-----V----------STFQ------SEGPRPVMVSRSRAGFTLNIVDTPGLI 98 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~-----~----------~~~~------~~t~~~~~~~~~~~~~~~~viDTPG~~ 98 (243)
-+|+++|..|+|||||+++|+...-.. + .++. ..+.........+.+..+.+|||||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999998532111 0 0000 011122234567788999999999985
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+.. .+....+ ..+|++++|++... ........+++.. +. ...|+++++||+|+.
T Consensus 83 df~---~~~~~~l------~~aD~~IlVvda~~-g~~~~~~~i~~~~-~~----~~~P~iivvNK~D~~ 136 (267)
T cd04169 83 DFS---EDTYRTL------TAVDSAVMVIDAAK-GVEPQTRKLFEVC-RL----RGIPIITFINKLDRE 136 (267)
T ss_pred HHH---HHHHHHH------HHCCEEEEEEECCC-CccHHHHHHHHHH-Hh----cCCCEEEEEECCccC
Confidence 321 2222223 37899999977643 2322223333222 21 236999999999974
No 207
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.34 E-value=8.3e-11 Score=96.42 Aligned_cols=124 Identities=22% Similarity=0.327 Sum_probs=71.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEE--------------------------------------
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM-------------------------------------- 79 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~-------------------------------------- 79 (243)
...+++++|++|+||||++++|+|......+.. ..|..+..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g-~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCC-cccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 446899999999999999999999753222110 01110000
Q ss_pred -----------EEeee---CCeEEEEEeCCCCCCCCC--C----cHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhH-
Q 026113 80 -----------VSRSR---AGFTLNIVDTPGLIEGGY--V----NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD- 138 (243)
Q Consensus 80 -----------~~~~~---~~~~~~viDTPG~~~~~~--~----~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~- 138 (243)
...+. +-..+.++||||+..... . ...+.+.+..|+. ...++||+|++... .+...+
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~-~~~~IIL~Vvda~~-d~~~~d~ 181 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFIS-KEECLILAVTPANV-DLANSDA 181 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHh-CccCeEEEEEECCC-CCCchhH
Confidence 00000 113599999999974311 1 1123333444443 34568888866543 233333
Q ss_pred HHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 139 KQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 139 ~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
.++.+++... ++++++|+||+|..++
T Consensus 182 l~ia~~ld~~-----~~rti~ViTK~D~~~~ 207 (240)
T smart00053 182 LKLAKEVDPQ-----GERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHHHHc-----CCcEEEEEECCCCCCc
Confidence 4555555432 3799999999998643
No 208
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.33 E-value=9.2e-12 Score=103.32 Aligned_cols=121 Identities=23% Similarity=0.327 Sum_probs=86.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-EEEEEeCCCCCCCCCCcH----HHHHHHHHH
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNY----HAIQLIKRF 114 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~viDTPG~~~~~~~~~----~~~~~~~~~ 114 (243)
..|.+||.+|||||||+|+|...+. .+..++.+|..+......+++. ++.|-|.||+......+. ++++.+.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE-- 273 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE-- 273 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHH--
Confidence 4688999999999999999998875 6888888888887776666665 599999999987766553 5566664
Q ss_pred HhcCCCcEEEEEEeCCCccc-Ch-hHHHHHHHHHHHhcc-cccccEEEEEeCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYRV-DN-LDKQITRAITDNFGE-QIWKRALIVLTHAQLS 167 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~-~~-~~~~~l~~l~~~~~~-~~~~~~ivV~tk~D~~ 167 (243)
.++.++||+++..... +. .+.+.|..-.+.+.+ -..+|.++|.||+|+.
T Consensus 274 ----R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 274 ----RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred ----hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 6789999987764311 11 122222222222222 2347899999999984
No 209
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.33 E-value=3.8e-11 Score=100.65 Aligned_cols=112 Identities=16% Similarity=0.252 Sum_probs=68.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccc-----ccC------C------CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVT-----VST------F------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~-----~~~------~------~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~ 103 (243)
+|+++|.+|+|||||+|+|++..-.. +.. . ...+.........+.+..+.+|||||..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f--- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF--- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence 58999999999999999998542110 000 0 011122223445678889999999998532
Q ss_pred cHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
...+..++ ..+|++++|++.+.. ........++.+.. ...|.++|+||+|..
T Consensus 78 ----~~~~~~~l--~~aD~~i~Vvd~~~g-~~~~~~~~~~~~~~-----~~~p~iivvNK~D~~ 129 (268)
T cd04170 78 ----VGETRAAL--RAADAALVVVSAQSG-VEVGTEKLWEFADE-----AGIPRIIFINKMDRE 129 (268)
T ss_pred ----HHHHHHHH--HHCCEEEEEEeCCCC-CCHHHHHHHHHHHH-----cCCCEEEEEECCccC
Confidence 11222222 388999999776542 22222333333322 136999999999975
No 210
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.33 E-value=2.5e-11 Score=114.20 Aligned_cols=115 Identities=14% Similarity=0.076 Sum_probs=77.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.++..|+++|..++|||||+++|.+..+. ....+..|.....+...+.+..+.+|||||..+.. .... +..
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~---~m~~----rga- 358 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT---AMRA----RGA- 358 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCccch---hHHH----hhh-
Confidence 46789999999999999999999987653 22233344444445566778899999999986432 1211 111
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+|++|+|++.+.. ........+..... ...|+|+|+||+|+.
T Consensus 359 -~~aDiaILVVdAddG-v~~qT~e~i~~a~~-----~~vPiIVviNKiDl~ 402 (787)
T PRK05306 359 -QVTDIVVLVVAADDG-VMPQTIEAINHAKA-----AGVPIIVAINKIDKP 402 (787)
T ss_pred -hhCCEEEEEEECCCC-CCHhHHHHHHHHHh-----cCCcEEEEEECcccc
Confidence 478999999887642 22222333332221 236999999999984
No 211
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.33 E-value=2.8e-11 Score=111.13 Aligned_cols=115 Identities=16% Similarity=0.070 Sum_probs=74.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
.++.+|+++|..++|||||+++|.+..+.. ...++.|.........+.+. .+.+|||||..+... . ..+.
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~---~----r~rg- 155 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTS---M----RARG- 155 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEECCCcEEEEEECCCCcchhh---H----HHhh-
Confidence 367899999999999999999999876532 22333444443444555444 899999999854321 1 1111
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
...+|++++|++++.. ........+..... ...|+++++||+|+.
T Consensus 156 -a~~aDiaILVVda~dg-v~~qT~e~i~~~~~-----~~vPiIVviNKiDl~ 200 (587)
T TIGR00487 156 -AKVTDIVVLVVAADDG-VMPQTIEAISHAKA-----ANVPIIVAINKIDKP 200 (587)
T ss_pred -hccCCEEEEEEECCCC-CCHhHHHHHHHHHH-----cCCCEEEEEECcccc
Confidence 1488999999877642 22222223322221 236999999999985
No 212
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.33 E-value=1.2e-12 Score=97.98 Aligned_cols=125 Identities=18% Similarity=0.114 Sum_probs=85.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
-.+||+++|..-+|||||+-.+...+.. .................+ ...++.||||+|+.......+- +
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn-~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPI---Y----- 82 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFN-CKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPI---Y----- 82 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcc-hhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCce---E-----
Confidence 4699999999999999999888866531 111110000111111222 2347999999999654333321 1
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~ 174 (243)
.++.+..|+|+++......+.-+.|+..++...|..+ -+++|+||+|+.+.+.++.
T Consensus 83 -YRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEeeR~Vt~ 138 (218)
T KOG0088|consen 83 -YRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEERQVTR 138 (218)
T ss_pred -EeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHhhhhhH
Confidence 1489999999999765555678899999999999875 7999999999965554443
No 213
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.33 E-value=1.3e-11 Score=92.52 Aligned_cols=115 Identities=19% Similarity=0.111 Sum_probs=66.1
Q ss_pred EEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCc
Q 026113 44 VMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 121 (243)
Q Consensus 44 lvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (243)
++|.+|+|||||+|++++........ ..+........... .+..+.+|||||..+..... ..+. ..+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~~~--~~~~ 70 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEY-ETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLR-------RLYY--RGAD 70 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCccc-ccchhheeeEEEEECCEEEEEEEEecCChHHHHhHH-------HHHh--cCCC
Confidence 57999999999999999887521111 11112222222222 35689999999985432111 1111 5899
Q ss_pred EEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 122 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 122 ~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
++++|+++...........+...... .......|+++|+||+|+...
T Consensus 71 ~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 71 GIILVYDVTDRESFENVKEWLLLILI-NKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHH-hhccCCCcEEEEEeccccccc
Confidence 99999777643211111111111111 112334799999999998643
No 214
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.32 E-value=2.5e-11 Score=97.59 Aligned_cols=115 Identities=18% Similarity=0.138 Sum_probs=64.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccc-ccC-CCCCCCeeEEEEeee---------------------------CC----
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVT-VST-FQSEGPRPVMVSRSR---------------------------AG---- 86 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~-~~~-~~~~t~~~~~~~~~~---------------------------~~---- 86 (243)
++|+++|..|+|||||+.+|.+..... ... ....+.........+ .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 478999999999999999998762100 000 000011110000000 12
Q ss_pred --eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113 87 --FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (243)
Q Consensus 87 --~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 164 (243)
..+.+|||||.. .+...+...+ ..+|++++|++++...........+..+.. .+. .|+++|+||+
T Consensus 81 ~~~~i~~iDtPG~~-------~~~~~~~~~~--~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvNK~ 147 (203)
T cd01888 81 LVRHVSFVDCPGHE-------ILMATMLSGA--AVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQNKI 147 (203)
T ss_pred cccEEEEEECCChH-------HHHHHHHHhh--hcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEEch
Confidence 689999999962 2222222222 478999999877642122222334433322 221 5799999999
Q ss_pred CCC
Q 026113 165 QLS 167 (243)
Q Consensus 165 D~~ 167 (243)
|+.
T Consensus 148 Dl~ 150 (203)
T cd01888 148 DLV 150 (203)
T ss_pred hcc
Confidence 985
No 215
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.31 E-value=8.9e-11 Score=95.08 Aligned_cols=112 Identities=16% Similarity=0.186 Sum_probs=65.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccc---------CC---------CCCCCeeEEEEee-----eCCeEEEEEeCCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVS---------TF---------QSEGPRPVMVSRS-----RAGFTLNIVDTPGL 97 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~---------~~---------~~~t~~~~~~~~~-----~~~~~~~viDTPG~ 97 (243)
+|+++|..|+|||||+++|++....... .. ...+......... .....+.+|||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999865321110 00 0011111111111 12367999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 98 IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.+. .......+ ..+|++++|++.... .......+++.... . ..|+++|+||+|+.
T Consensus 82 ~~f---~~~~~~~~------~~aD~~llVvD~~~~-~~~~~~~~~~~~~~---~--~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNF---MDEVAAAL------RLSDGVVLVVDVVEG-VTSNTERLIRHAIL---E--GLPIVLVINKIDRL 136 (213)
T ss_pred cch---HHHHHHHH------HhCCEEEEEEECCCC-CCHHHHHHHHHHHH---c--CCCEEEEEECcccC
Confidence 643 12222223 388999999776432 22233333333221 1 26999999999975
No 216
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.31 E-value=4.1e-11 Score=97.13 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=71.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEe--eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR--SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...+||+++|.+|+|||||++.++.... .....++.......... ......+.+|||||........ ..+
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~-------~~~ 78 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEF-EKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR-------DGY 78 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh-------HHH
Confidence 3569999999999999999986654432 11112222212111112 2234589999999974321111 112
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
. ..++++++|+++...........++..+..... ..|+++|+||+|+.
T Consensus 79 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 79 Y--IKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE---NIPIVLVGNKVDVK 126 (215)
T ss_pred h--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccCc
Confidence 2 478999999888643322333456666655432 26899999999985
No 217
>PRK12735 elongation factor Tu; Reviewed
Probab=99.30 E-value=8.6e-11 Score=103.74 Aligned_cols=119 Identities=12% Similarity=0.071 Sum_probs=72.7
Q ss_pred hcCCCceEEEEEcCCCCcHHHHHHHHhCCC------ccc---------ccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 026113 34 QENVNTLTILVMGKGGVGKSSTVNSIIGEK------AVT---------VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98 (243)
Q Consensus 34 ~~~~~~~~IllvG~~g~GKSSlin~llg~~------~~~---------~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~ 98 (243)
++.++.++|+++|..++|||||+++|++.. .+. .....+.|.+........++..+.++||||..
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 344578999999999999999999999621 000 00012223333233344567789999999983
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc-EEEEEeCCCCC
Q 026113 99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS 167 (243)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~ 167 (243)
++...+...+ ..+|++++|++... .......+.+..+.. .+ .| +++|+||+|+.
T Consensus 87 -------~f~~~~~~~~--~~aD~~llVvda~~-g~~~qt~e~l~~~~~-~g----i~~iivvvNK~Dl~ 141 (396)
T PRK12735 87 -------DYVKNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQ-VG----VPYIVVFLNKCDMV 141 (396)
T ss_pred -------HHHHHHHhhh--ccCCEEEEEEECCC-CCchhHHHHHHHHHH-cC----CCeEEEEEEecCCc
Confidence 2222333222 48899999977653 233334444433332 22 46 45689999985
No 218
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.30 E-value=4.7e-12 Score=99.62 Aligned_cols=116 Identities=19% Similarity=0.180 Sum_probs=83.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-Ce--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~-~~--~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...|+++||..++|||+++.++.... +.....|.. .+.......++ |+ .+.+|||+|+.+.+... -
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~-fp~~yvPTV-Fdnys~~v~V~dg~~v~L~LwDTAGqedYDrlR---------p 71 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNA-FPEEYVPTV-FDNYSANVTVDDGKPVELGLWDTAGQEDYDRLR---------P 71 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCc-CcccccCeE-EccceEEEEecCCCEEEEeeeecCCCccccccc---------c
Confidence 46899999999999999988877553 333333322 23333445553 65 68899999998764322 2
Q ss_pred HhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
++-+.+|+||+|++++... +.+...+|+..++..++. .|+|+|+||.|++
T Consensus 72 lsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 72 LSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLR 122 (198)
T ss_pred cCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhh
Confidence 2447999999999986543 555678889888888743 6999999999997
No 219
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.29 E-value=1.5e-11 Score=92.63 Aligned_cols=149 Identities=16% Similarity=0.064 Sum_probs=95.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEe---eeCCeEEEEEeCCCCCCCCCCcHHHHHHHH-H
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR---SRAGFTLNIVDTPGLIEGGYVNYHAIQLIK-R 113 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~viDTPG~~~~~~~~~~~~~~~~-~ 113 (243)
-.+|++++|.+-+|||||+..++..+.+..+ .|..+.+....-. .....++++|||+|+. .++.+. .
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaels-dptvgvdffarlie~~pg~riklqlwdtagqe--------rfrsitks 77 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELS-DPTVGVDFFARLIELRPGYRIKLQLWDTAGQE--------RFRSITKS 77 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccC-CCccchHHHHHHHhcCCCcEEEEEEeeccchH--------HHHHHHHH
Confidence 3589999999999999999999977644333 2322222211111 1223589999999994 333332 3
Q ss_pred HHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHhhhHHHHHHHcccc
Q 026113 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPST 193 (243)
Q Consensus 114 ~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 193 (243)
|. ++.-++++|+++.+....+.-..|++.-+...+.....-..+|++|+|+...+.++.++..+-....-..+|+.+.
T Consensus 78 yy--rnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSa 155 (213)
T KOG0091|consen 78 YY--RNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSA 155 (213)
T ss_pred Hh--hcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecc
Confidence 33 4777889998987755667777888777766653333447889999999877777777654433333344666655
Q ss_pred CCcc
Q 026113 194 WMKK 197 (243)
Q Consensus 194 ~~~~ 197 (243)
+-..
T Consensus 156 k~g~ 159 (213)
T KOG0091|consen 156 KNGC 159 (213)
T ss_pred cCCC
Confidence 5433
No 220
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.28 E-value=6.7e-11 Score=102.31 Aligned_cols=133 Identities=13% Similarity=0.173 Sum_probs=87.9
Q ss_pred HHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCC----Ccc-----------cccCCCC---CCCeeEE---EEeee--
Q 026113 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE----KAV-----------TVSTFQS---EGPRPVM---VSRSR-- 84 (243)
Q Consensus 28 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~----~~~-----------~~~~~~~---~t~~~~~---~~~~~-- 84 (243)
+.+.+.++....+.|.++|+.++|||||+|++.+. +.. .+++.++ +|.++.. ...+.
T Consensus 6 iykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~ 85 (492)
T TIGR02836 6 IYKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEINI 85 (492)
T ss_pred HHHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEec
Confidence 55667777778999999999999999999999998 544 3344444 3444433 11111
Q ss_pred -C--CeEEEEEeCCCCCCCCCCcHHHHHH----------------------HHHHHhcCCCcEEEEEE-eC-----CCcc
Q 026113 85 -A--GFTLNIVDTPGLIEGGYVNYHAIQL----------------------IKRFLLNKTIDVLLYVD-RL-----DVYR 133 (243)
Q Consensus 85 -~--~~~~~viDTPG~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~il~v~-~~-----d~~~ 133 (243)
+ ..++.++||+|+.+.+.......+. .++.+ ..++++-|+|. +- ....
T Consensus 86 ~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI-~dhstIgivVtTDgsi~dI~Re~ 164 (492)
T TIGR02836 86 NEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVI-QEHSTIGVVVTTDGTITDIPRED 164 (492)
T ss_pred cCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHH-HhcCcEEEEEEcCCCcccccccc
Confidence 1 2489999999998765443211111 11111 13788888884 22 1123
Q ss_pred cChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113 134 VDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (243)
Q Consensus 134 ~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 166 (243)
..+.+.++++.+++. .+|+++|+|++|-
T Consensus 165 y~~aEe~~i~eLk~~-----~kPfiivlN~~dp 192 (492)
T TIGR02836 165 YVEAEERVIEELKEL-----NKPFIILLNSTHP 192 (492)
T ss_pred chHHHHHHHHHHHhc-----CCCEEEEEECcCC
Confidence 567788888888875 3799999999994
No 221
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.28 E-value=4.4e-11 Score=106.67 Aligned_cols=118 Identities=13% Similarity=0.142 Sum_probs=72.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccc------------------------c------CCCCCCCeeEEEEeeeCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTV------------------------S------TFQSEGPRPVMVSRSRAG 86 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~------------------------~------~~~~~t~~~~~~~~~~~~ 86 (243)
+..++|+++|..++|||||+++|+...-... . ...+.|.+.......+.+
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 4679999999999999999999984211000 0 011233333344556678
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccC--hhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD--NLDKQITRAITDNFGEQIWKRALIVLTHA 164 (243)
Q Consensus 87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~--~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 164 (243)
..+.+|||||..+ +...+...+ ..+|++++|++++...+. ......+ .+...++. .++++|+||+
T Consensus 85 ~~i~iiDtpGh~~-------f~~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~~~---~~iIVviNK~ 151 (426)
T TIGR00483 85 YEVTIVDCPGHRD-------FIKNMITGA--SQADAAVLVVAVGDGEFEVQPQTREHA-FLARTLGI---NQLIVAINKM 151 (426)
T ss_pred eEEEEEECCCHHH-------HHHHHHhhh--hhCCEEEEEEECCCCCcccCCchHHHH-HHHHHcCC---CeEEEEEECh
Confidence 8999999999732 222222222 489999999887643211 1111111 22333332 5799999999
Q ss_pred CCC
Q 026113 165 QLS 167 (243)
Q Consensus 165 D~~ 167 (243)
|+.
T Consensus 152 Dl~ 154 (426)
T TIGR00483 152 DSV 154 (426)
T ss_pred hcc
Confidence 985
No 222
>PLN03127 Elongation factor Tu; Provisional
Probab=99.28 E-value=1.8e-10 Score=102.92 Aligned_cols=117 Identities=13% Similarity=0.052 Sum_probs=75.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC------Cccc---------ccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSIIGE------KAVT---------VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~llg~------~~~~---------~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~ 100 (243)
.+..++|+++|..++|||||+++|++. .... .....+.|.+......+.++.++.++||||+.+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~- 136 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD- 136 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc-
Confidence 457899999999999999999999743 1000 011133344444445556678899999999842
Q ss_pred CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc-EEEEEeCCCCC
Q 026113 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS 167 (243)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~ 167 (243)
+...+...+ ..+|++++|++.+. .....+.+.+..+... + .| +|+|+||+|+.
T Consensus 137 ------f~~~~~~g~--~~aD~allVVda~~-g~~~qt~e~l~~~~~~-g----ip~iIvviNKiDlv 190 (447)
T PLN03127 137 ------YVKNMITGA--AQMDGGILVVSAPD-GPMPQTKEHILLARQV-G----VPSLVVFLNKVDVV 190 (447)
T ss_pred ------hHHHHHHHH--hhCCEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCeEEEEEEeeccC
Confidence 222222222 36999999977653 2344455555554432 3 46 67899999985
No 223
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.28 E-value=1.8e-10 Score=93.71 Aligned_cols=112 Identities=14% Similarity=0.191 Sum_probs=66.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccC---------------CCCCCCeeEEEEeeeC----------CeEEEEEeCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRA----------GFTLNIVDTP 95 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~---------------~~~~t~~~~~~~~~~~----------~~~~~viDTP 95 (243)
+|+++|..++|||||+.+|+...-..... ..+.|.........+. +..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 68999999999999999998543110000 0011111111111222 5679999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 96 GLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 96 G~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
|..+. ..+....+ ..+|++++|+++... ........++.... .+ .|+++|+||+|+.
T Consensus 82 G~~~f---~~~~~~~l------~~aD~~ilVvD~~~g-~~~~t~~~l~~~~~---~~--~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDF---SSEVTAAL------RLCDGALVVVDAVEG-VCVQTETVLRQALK---ER--VKPVLVINKIDRL 138 (222)
T ss_pred Ccccc---HHHHHHHH------HhcCeeEEEEECCCC-CCHHHHHHHHHHHH---cC--CCEEEEEECCCcc
Confidence 99643 22333333 389999999777542 33333333333322 22 5899999999974
No 224
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.28 E-value=5.2e-11 Score=96.89 Aligned_cols=114 Identities=14% Similarity=0.144 Sum_probs=68.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcc--c----------------------c------cCCCCCCCeeEEEEeeeCCeEEE
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAV--T----------------------V------STFQSEGPRPVMVSRSRAGFTLN 90 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~--~----------------------~------~~~~~~t~~~~~~~~~~~~~~~~ 90 (243)
+|+++|..++|||||+.+|+...-. . . ......|.+.......+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 5899999999999999999732100 0 0 00122333444455677899999
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcc------cChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113 91 IVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (243)
Q Consensus 91 viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~------~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 164 (243)
+|||||+.+ ....+...+ ..+|++++|++..... ........+... ...+. +|+++|+||+
T Consensus 81 liDtpG~~~-------~~~~~~~~~--~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~iiivvNK~ 147 (219)
T cd01883 81 ILDAPGHRD-------FVPNMITGA--SQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGV---KQLIVAVNKM 147 (219)
T ss_pred EEECCChHH-------HHHHHHHHh--hhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcCC---CeEEEEEEcc
Confidence 999999732 111122222 4799999997765421 111122222222 22221 5899999999
Q ss_pred CCC
Q 026113 165 QLS 167 (243)
Q Consensus 165 D~~ 167 (243)
|+.
T Consensus 148 Dl~ 150 (219)
T cd01883 148 DDV 150 (219)
T ss_pred ccc
Confidence 985
No 225
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.28 E-value=1.3e-10 Score=94.86 Aligned_cols=113 Identities=12% Similarity=0.094 Sum_probs=71.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCC--------------CCCCC------------------------eeEEEEe
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTF--------------QSEGP------------------------RPVMVSR 82 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~--------------~~~t~------------------------~~~~~~~ 82 (243)
||+++|..++|||||++.+..... ..... .+.|. .......
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~-~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGEL-DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCc-CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence 589999999999999999985321 10000 00000 0000122
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEe
Q 026113 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162 (243)
Q Consensus 83 ~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~t 162 (243)
...+..+.++||||.. ...+.+...+....+|++++|++++. ...+.+..++.++... + .|+++|+|
T Consensus 80 ~~~~~~i~liDtpG~~-------~~~~~~~~~~~~~~~D~~llVvda~~-g~~~~d~~~l~~l~~~-~----ip~ivvvN 146 (224)
T cd04165 80 EKSSKLVTFIDLAGHE-------RYLKTTLFGLTGYAPDYAMLVVAANA-GIIGMTKEHLGLALAL-N----IPVFVVVT 146 (224)
T ss_pred eeCCcEEEEEECCCcH-------HHHHHHHHhhcccCCCEEEEEEECCC-CCcHHHHHHHHHHHHc-C----CCEEEEEE
Confidence 3457789999999973 22233333332246899999977654 3566777777776653 2 68999999
Q ss_pred CCCCC
Q 026113 163 HAQLS 167 (243)
Q Consensus 163 k~D~~ 167 (243)
|+|+.
T Consensus 147 K~D~~ 151 (224)
T cd04165 147 KIDLA 151 (224)
T ss_pred Ccccc
Confidence 99985
No 226
>PRK12736 elongation factor Tu; Reviewed
Probab=99.27 E-value=1.1e-10 Score=103.10 Aligned_cols=117 Identities=14% Similarity=0.052 Sum_probs=73.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCccc---------------ccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVT---------------VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~ 100 (243)
.++.++|+++|..++|||||+++|++..... .....+.|.+.........+..+.+|||||..
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~-- 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA-- 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH--
Confidence 4578999999999999999999999742100 00012233333333334467789999999973
Q ss_pred CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc-EEEEEeCCCCC
Q 026113 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS 167 (243)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~ 167 (243)
++...+...+ ..+|++++|++.+. .........+..+... | .| +|+|+||+|+.
T Consensus 87 -----~f~~~~~~~~--~~~d~~llVvd~~~-g~~~~t~~~~~~~~~~-g----~~~~IvviNK~D~~ 141 (394)
T PRK12736 87 -----DYVKNMITGA--AQMDGAILVVAATD-GPMPQTREHILLARQV-G----VPYLVVFLNKVDLV 141 (394)
T ss_pred -----HHHHHHHHHH--hhCCEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCEEEEEEEecCCc
Confidence 2222222222 47899999977653 2334445555444432 3 45 78999999985
No 227
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.27 E-value=7.8e-11 Score=108.49 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=72.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcc--cccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAV--TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+.|+++|..++|||||+|+|+|.... ......+.|.+.........+..+.+|||||.. .....+...+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe-------~f~~~~~~g~-- 71 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE-------KFISNAIAGG-- 71 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH-------HHHHHHHhhh--
Confidence 46899999999999999999985421 111222334444334455667899999999973 2222222222
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++.. ........+..+. ..+. .++++|+||+|+.
T Consensus 72 ~~aD~aILVVDa~~G-~~~qT~ehl~il~-~lgi---~~iIVVlNK~Dlv 116 (581)
T TIGR00475 72 GGIDAALLVVDADEG-VMTQTGEHLAVLD-LLGI---PHTIVVITKADRV 116 (581)
T ss_pred ccCCEEEEEEECCCC-CcHHHHHHHHHHH-HcCC---CeEEEEEECCCCC
Confidence 489999999887642 2233334443333 2331 2499999999986
No 228
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.26 E-value=5.8e-11 Score=110.93 Aligned_cols=115 Identities=11% Similarity=0.077 Sum_probs=72.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee----CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR----AGFTLNIVDTPGLIEGGYVNYHAIQLIK 112 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~viDTPG~~~~~~~~~~~~~~~~ 112 (243)
.++.+|+++|.+++|||||+++|++..... ...++.|.....+...+ .+..+.+|||||..+ +.....
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-------F~~mr~ 313 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-------FSSMRS 313 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcHHH-------HHHHHH
Confidence 367899999999999999999999876432 22223333222222222 357899999999832 111222
Q ss_pred HHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 113 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 113 ~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+++ ..+|++++|++++.. ........+..+.. ...|+|+|+||+|+.
T Consensus 314 rg~--~~aDiaILVVDA~dG-v~~QT~E~I~~~k~-----~~iPiIVViNKiDl~ 360 (742)
T CHL00189 314 RGA--NVTDIAILIIAADDG-VKPQTIEAINYIQA-----ANVPIIVAINKIDKA 360 (742)
T ss_pred HHH--HHCCEEEEEEECcCC-CChhhHHHHHHHHh-----cCceEEEEEECCCcc
Confidence 222 489999999877542 22222333333322 236999999999985
No 229
>PLN03126 Elongation factor Tu; Provisional
Probab=99.26 E-value=2.1e-10 Score=103.12 Aligned_cols=118 Identities=13% Similarity=0.037 Sum_probs=72.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccc---------------cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTV---------------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~ 100 (243)
.+..++|+++|..++|||||+++|++...... ......|.+.........+..+.+|||||..+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~- 156 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD- 156 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH-
Confidence 35679999999999999999999996321100 01112222222333455778999999999842
Q ss_pred CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+...+...+ ..+|++++|++.+.- .....++.+..+. ..|. .++|+++||+|+.
T Consensus 157 ------f~~~~~~g~--~~aD~ailVVda~~G-~~~qt~e~~~~~~-~~gi---~~iIvvvNK~Dl~ 210 (478)
T PLN03126 157 ------YVKNMITGA--AQMDGAILVVSGADG-PMPQTKEHILLAK-QVGV---PNMVVFLNKQDQV 210 (478)
T ss_pred ------HHHHHHHHH--hhCCEEEEEEECCCC-CcHHHHHHHHHHH-HcCC---CeEEEEEeccccc
Confidence 223333222 488999999776532 3333344443333 2332 3488999999985
No 230
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.25 E-value=9.1e-11 Score=95.64 Aligned_cols=121 Identities=17% Similarity=0.086 Sum_probs=70.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee-eCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHHHhc
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVN--YHAIQLIKRFLLN 117 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~viDTPG~~~~~~~~--~~~~~~~~~~~~~ 117 (243)
||+++|+.|+||||..+.+++.-.+.....-..|......... .....+.+||.||+.+.-... ......+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if------ 74 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIF------ 74 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHH------
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHH------
Confidence 7999999999999999999987543322222233333333333 345699999999997553321 1111122
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++++++||+++......+.-..+...+......+....+-+.+.|+|+.
T Consensus 75 ~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l 124 (232)
T PF04670_consen 75 SNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLL 124 (232)
T ss_dssp CTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS
T ss_pred hccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccC
Confidence 48899999987753333333344444444443334446799999999986
No 231
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.24 E-value=2.2e-10 Score=101.17 Aligned_cols=117 Identities=13% Similarity=0.062 Sum_probs=72.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC------Cccc---------ccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGE------KAVT---------VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~------~~~~---------~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~ 101 (243)
+..++|+++|..++|||||+++|++. ..+. .....+.|.+.........+..+.+|||||..+
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~-- 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD-- 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH--
Confidence 46799999999999999999999843 1000 001123344433334445677899999999842
Q ss_pred CCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+...+...+ ..+|++++|++++.. ......+.+..+... +. .++|+|+||+|+.
T Consensus 88 -----f~~~~~~~~--~~~D~~ilVvda~~g-~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~ 141 (394)
T TIGR00485 88 -----YVKNMITGA--AQMDGAILVVSATDG-PMPQTREHILLARQV-GV---PYIVVFLNKCDMV 141 (394)
T ss_pred -----HHHHHHHHH--hhCCEEEEEEECCCC-CcHHHHHHHHHHHHc-CC---CEEEEEEEecccC
Confidence 222222222 478999999777531 334444455444332 21 3455789999985
No 232
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.23 E-value=1.2e-10 Score=104.78 Aligned_cols=118 Identities=17% Similarity=0.117 Sum_probs=71.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCccccc------------CC--------------------CCCCCeeEEEEee
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS------------TF--------------------QSEGPRPVMVSRS 83 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~------------~~--------------------~~~t~~~~~~~~~ 83 (243)
.+..++|+++|..++|||||+++|+...-.... .. .+.|.+.......
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 357899999999999999999999855311110 00 0112222233345
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeC
Q 026113 84 RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 163 (243)
Q Consensus 84 ~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk 163 (243)
+++..+.+|||||.. .+...+...+ ..+|++++|++.+.. ........+. +...++. +++|+|+||
T Consensus 104 ~~~~~i~~iDTPGh~-------~f~~~~~~~l--~~aD~allVVDa~~G-~~~qt~~~~~-l~~~lg~---~~iIvvvNK 169 (474)
T PRK05124 104 TEKRKFIIADTPGHE-------QYTRNMATGA--STCDLAILLIDARKG-VLDQTRRHSF-IATLLGI---KHLVVAVNK 169 (474)
T ss_pred cCCcEEEEEECCCcH-------HHHHHHHHHH--hhCCEEEEEEECCCC-ccccchHHHH-HHHHhCC---CceEEEEEe
Confidence 677899999999963 1222222222 589999999776532 2222222222 2333332 589999999
Q ss_pred CCCC
Q 026113 164 AQLS 167 (243)
Q Consensus 164 ~D~~ 167 (243)
+|+.
T Consensus 170 iD~~ 173 (474)
T PRK05124 170 MDLV 173 (474)
T ss_pred eccc
Confidence 9985
No 233
>PRK00049 elongation factor Tu; Reviewed
Probab=99.23 E-value=3.4e-10 Score=99.92 Aligned_cols=117 Identities=12% Similarity=0.064 Sum_probs=73.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcc------cc---------cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAV------TV---------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~------~~---------~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~ 100 (243)
.+..++|+++|..++|||||+++|++.... .. ......|.+.........+..+.++||||+.
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~-- 86 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA-- 86 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH--
Confidence 357899999999999999999999973110 00 0012223333333334567789999999983
Q ss_pred CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEE-EEEeCCCCC
Q 026113 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL-IVLTHAQLS 167 (243)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~i-vV~tk~D~~ 167 (243)
+....+...+ ..+|++++|++.+. .........+..+.. ++ .|.+ +++||+|+.
T Consensus 87 -----~f~~~~~~~~--~~aD~~llVVDa~~-g~~~qt~~~~~~~~~-~g----~p~iiVvvNK~D~~ 141 (396)
T PRK00049 87 -----DYVKNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQ-VG----VPYIVVFLNKCDMV 141 (396)
T ss_pred -----HHHHHHHhhh--ccCCEEEEEEECCC-CCchHHHHHHHHHHH-cC----CCEEEEEEeecCCc
Confidence 2223333222 58999999977653 244455555554443 23 4655 689999985
No 234
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.21 E-value=7.6e-11 Score=98.29 Aligned_cols=85 Identities=24% Similarity=0.388 Sum_probs=70.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc----HHHHHHHHHH
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN----YHAIQLIKRF 114 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~----~~~~~~~~~~ 114 (243)
..+++++|.+++|||||+|.|++.+. .+..++.+|..+......+.|.+++++|+||+....... .+++..+
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~--- 138 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA--- 138 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeee---
Confidence 46999999999999999999999984 678888899888888899999999999999988654433 3444444
Q ss_pred HhcCCCcEEEEEEeCC
Q 026113 115 LLNKTIDVLLYVDRLD 130 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d 130 (243)
+++|+|++|+++.
T Consensus 139 ---R~ADlIiiVld~~ 151 (365)
T COG1163 139 ---RNADLIIIVLDVF 151 (365)
T ss_pred ---ccCCEEEEEEecC
Confidence 4999999996665
No 235
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.21 E-value=2.7e-10 Score=95.70 Aligned_cols=120 Identities=22% Similarity=0.271 Sum_probs=84.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCC----CcHHHHHHHHHHH
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGY----VNYHAIQLIKRFL 115 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~viDTPG~~~~~~----~~~~~~~~~~~~~ 115 (243)
-|.+||-+++|||||++.+...+. .+.++|.+|..+....... .+.++.+-|-||+.+... ...+.++.+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE--- 236 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIE--- 236 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHH---
Confidence 456899999999999999998874 6788899888887666554 556799999999987544 3456777776
Q ss_pred hcCCCcEEEEEEeCCCccc--ChhHH-HHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRV--DNLDK-QITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~--~~~~~-~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.+.++++|+++..... ...+. .+...+.+.-..-..+|.++|+||+|+.
T Consensus 237 ---Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~ 288 (369)
T COG0536 237 ---RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP 288 (369)
T ss_pred ---hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence 5578999977754321 11222 2333333322223448999999999964
No 236
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=1.2e-10 Score=85.60 Aligned_cols=129 Identities=16% Similarity=0.129 Sum_probs=83.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCC-CCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~-t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
-++-+++|..|+|||+|+..+...+ +..+.|.+ +.+......++.| .++++|||+|+.. .....+.|.
T Consensus 11 ifkyiiigdmgvgkscllhqftekk--fmadcphtigvefgtriievsgqkiklqiwdtagqer-------fravtrsyy 81 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKK--FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER-------FRAVTRSYY 81 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHH--HhhcCCcccceecceeEEEecCcEEEEEEeecccHHH-------HHHHHHHHh
Confidence 3788999999999999999998776 33444432 2222233344444 4799999999942 222333333
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHh
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK 180 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~ 180 (243)
+++...|+|+++...+.......|+..-+.+-. ...-+++++||+|+...+++.+++....
T Consensus 82 --rgaagalmvyditrrstynhlsswl~dar~ltn--pnt~i~lignkadle~qrdv~yeeak~f 142 (215)
T KOG0097|consen 82 --RGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLESQRDVTYEEAKEF 142 (215)
T ss_pred --ccccceeEEEEehhhhhhhhHHHHHhhhhccCC--CceEEEEecchhhhhhcccCcHHHHHHH
Confidence 588899999888754333344444443333322 2235888999999988888888765443
No 237
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.20 E-value=8.9e-11 Score=109.51 Aligned_cols=117 Identities=12% Similarity=0.085 Sum_probs=72.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccC----------CCC----------------------CCCeeEEEEeee
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST----------FQS----------------------EGPRPVMVSRSR 84 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~----------~~~----------------------~t~~~~~~~~~~ 84 (243)
++.++|+++|..++|||||+|+|+...-..... ..+ .|.+.......+
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 467999999999999999999999653221100 111 122222334456
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (243)
Q Consensus 85 ~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 164 (243)
.+.++.++||||..+ ....+...+ ..+|++++|++.+.. ........+..+ ...+. +++++|+||+
T Consensus 102 ~~~~~~liDtPG~~~-------f~~~~~~~~--~~aD~~llVvda~~g-~~~~t~e~~~~~-~~~~~---~~iivvvNK~ 167 (632)
T PRK05506 102 PKRKFIVADTPGHEQ-------YTRNMVTGA--STADLAIILVDARKG-VLTQTRRHSFIA-SLLGI---RHVVLAVNKM 167 (632)
T ss_pred CCceEEEEECCChHH-------HHHHHHHHH--HhCCEEEEEEECCCC-ccccCHHHHHHH-HHhCC---CeEEEEEEec
Confidence 778899999999732 222222222 489999999776532 222223333332 22332 5799999999
Q ss_pred CCC
Q 026113 165 QLS 167 (243)
Q Consensus 165 D~~ 167 (243)
|+.
T Consensus 168 D~~ 170 (632)
T PRK05506 168 DLV 170 (632)
T ss_pred ccc
Confidence 985
No 238
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.20 E-value=4.6e-10 Score=105.66 Aligned_cols=114 Identities=15% Similarity=0.098 Sum_probs=74.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCccc-----ccC------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVT-----VST------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~-----~~~------------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~ 101 (243)
-.+|+++|..++|||||+|+|++..-.. +.. ..+.|.........+.+..+.+|||||+.+..
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT 89 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence 4599999999999999999998432110 111 12233344455667889999999999996532
Q ss_pred CCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++...+ ..+|++++|++... .........+..+... ..|+++|+||+|+.
T Consensus 90 ---~~~~~~l------~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~ 140 (689)
T TIGR00484 90 ---VEVERSL------RVLDGAVAVLDAVG-GVQPQSETVWRQANRY-----EVPRIAFVNKMDKT 140 (689)
T ss_pred ---HHHHHHH------HHhCEEEEEEeCCC-CCChhHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 1233333 37899999977643 2333344444443322 26899999999985
No 239
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.20 E-value=5.5e-10 Score=102.93 Aligned_cols=112 Identities=16% Similarity=0.198 Sum_probs=72.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccc---------------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVS---------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY 105 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~ 105 (243)
+|+++|..++|||||+++|+...-.... ...+.|.........+.+..+.+|||||..+.. .
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~---~ 79 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG---G 79 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH---H
Confidence 7999999999999999999853211100 011223333445567889999999999985421 2
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 106 ~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+ +.+++ ..+|++++|++... ........++..+... ..|+++|+||+|+.
T Consensus 80 e----v~~~l--~~aD~alLVVDa~~-G~~~qT~~~l~~a~~~-----~ip~IVviNKiD~~ 129 (594)
T TIGR01394 80 E----VERVL--GMVDGVLLLVDASE-GPMPQTRFVLKKALEL-----GLKPIVVINKIDRP 129 (594)
T ss_pred H----HHHHH--HhCCEEEEEEeCCC-CCcHHHHHHHHHHHHC-----CCCEEEEEECCCCC
Confidence 2 23333 38899999977643 2333344444444331 25899999999984
No 240
>PRK10218 GTP-binding protein; Provisional
Probab=99.19 E-value=6e-10 Score=102.68 Aligned_cols=114 Identities=16% Similarity=0.180 Sum_probs=72.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccC---------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~ 103 (243)
--+|+++|..++|||||+++|+...-..... ..+.|.........+.+..+.+|||||..+..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~-- 82 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG-- 82 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH--
Confidence 4689999999999999999999642111110 01112222334456788899999999986542
Q ss_pred cHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++...+ ..+|++++|++... .........+..+.. . ..|.++|+||+|..
T Consensus 83 -~~v~~~l------~~aDg~ILVVDa~~-G~~~qt~~~l~~a~~-~----gip~IVviNKiD~~ 133 (607)
T PRK10218 83 -GEVERVM------SMVDSVLLVVDAFD-GPMPQTRFVTKKAFA-Y----GLKPIVVINKVDRP 133 (607)
T ss_pred -HHHHHHH------HhCCEEEEEEeccc-CccHHHHHHHHHHHH-c----CCCEEEEEECcCCC
Confidence 2233233 48999999977643 223333333333332 2 25889999999974
No 241
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.19 E-value=8.4e-11 Score=90.65 Aligned_cols=57 Identities=23% Similarity=0.372 Sum_probs=45.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~ 97 (243)
.+.+|+++|.+|+|||||+|+|++.....++..+++|....... .+..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~---~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYIT---LMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEE---cCCCEEEEECcCC
Confidence 56899999999999999999999988777777777665443322 2345899999996
No 242
>PRK12739 elongation factor G; Reviewed
Probab=99.19 E-value=3.7e-10 Score=106.33 Aligned_cols=115 Identities=18% Similarity=0.164 Sum_probs=75.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc-----cccc------------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKA-----VTVS------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~-----~~~~------------~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~ 100 (243)
+-.+|.++|..++|||||+++|+...- ..+. ...+.|.........+.+..+.++||||+.+.
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 456899999999999999999975311 0011 11233444445566788999999999998531
Q ss_pred CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
...+.+.+ ..+|++++|++... .....+...+..+.+. ..|.++++||+|+.
T Consensus 87 -------~~e~~~al--~~~D~~ilVvDa~~-g~~~qt~~i~~~~~~~-----~~p~iv~iNK~D~~ 138 (691)
T PRK12739 87 -------TIEVERSL--RVLDGAVAVFDAVS-GVEPQSETVWRQADKY-----GVPRIVFVNKMDRI 138 (691)
T ss_pred -------HHHHHHHH--HHhCeEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 11222222 37899999966543 2444455555444332 26899999999986
No 243
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.19 E-value=2.6e-10 Score=104.74 Aligned_cols=114 Identities=13% Similarity=0.052 Sum_probs=68.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee------------------CCeEEEEEeCCCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------------------AGFTLNIVDTPGLIE 99 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~------------------~~~~~~viDTPG~~~ 99 (243)
++..|+++|.+++|||||+|+|++..+.... ....|.+........ ....+.+|||||+.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e-~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKRE-AGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccccc-CCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 3567999999999999999999988643211 111222111100100 012488999999843
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
... ....+. ..+|++++|++++. .........+..+... ..|+++|+||+|+.
T Consensus 82 f~~-------l~~~~~--~~aD~~IlVvD~~~-g~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 82 FTN-------LRKRGG--ALADLAILIVDINE-GFKPQTQEALNILRMY-----KTPFVVAANKIDRI 134 (590)
T ss_pred HHH-------HHHHHH--hhCCEEEEEEECCc-CCCHhHHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence 211 111122 48999999988764 2333344444444322 36999999999985
No 244
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.18 E-value=2e-10 Score=89.84 Aligned_cols=136 Identities=17% Similarity=0.201 Sum_probs=71.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
.-.|+++|++|+|||+|...|...... ....+. .+ ...... .+..+.+||+||... ......+.+.
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~--~T~tS~--e~-n~~~~~~~~~~~~~~lvD~PGH~r---lr~~~~~~~~--- 71 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTV--PTVTSM--EN-NIAYNVNNSKGKKLRLVDIPGHPR---LRSKLLDELK--- 71 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-----B---S--SE-EEECCGSSTCGTCECEEEETT-HC---CCHHHHHHHH---
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcC--Ceeccc--cC-CceEEeecCCCCEEEEEECCCcHH---HHHHHHHhhh---
Confidence 457999999999999999999976421 111111 11 112222 456899999999953 3334333321
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc----ccccccEEEEEeCCCCCCCCCCCHHHHHHhhhHHHHHHH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG----EQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFV 189 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~----~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i 189 (243)
..+.+.+|+||++. ......-+...+.+...+- .....|++|+.||.|+... .+.....+...+++..+.
T Consensus 72 ~~~~~k~IIfvvDS--s~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A--~~~~~Ik~~LE~Ei~~lr 145 (181)
T PF09439_consen 72 YLSNAKGIIFVVDS--STDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA--KPPKKIKKLLEKEIDKLR 145 (181)
T ss_dssp HHGGEEEEEEEEET--TTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-----HHHHHHHHHHHHHHHH
T ss_pred chhhCCEEEEEEeC--ccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc--CCHHHHHHHHHHHHHHHH
Confidence 12478999999554 3333333444444443332 1234789999999998632 223333233344444444
No 245
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.18 E-value=1.3e-10 Score=97.10 Aligned_cols=84 Identities=24% Similarity=0.295 Sum_probs=61.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-----------------EEEEEeCCCCCCCCCCc
Q 026113 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-----------------TLNIVDTPGLIEGGYVN 104 (243)
Q Consensus 42 IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~viDTPG~~~~~~~~ 104 (243)
|.++|.+|+|||||+|+|++... .++.+|.+|..+......+.+. .+.++||||+.......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 57899999999999999999986 7788888887776655555442 49999999998654333
Q ss_pred HHHHHHHHHHHhc-CCCcEEEEEEeC
Q 026113 105 YHAIQLIKRFLLN-KTIDVLLYVDRL 129 (243)
Q Consensus 105 ~~~~~~~~~~~~~-~~~~~il~v~~~ 129 (243)
...- .+++.. ..+|++++|++.
T Consensus 80 ~glg---~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 80 EGLG---NKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred hHHH---HHHHHHHHhCCEEEEEEeC
Confidence 2211 122221 489999999765
No 246
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.18 E-value=2.2e-10 Score=98.81 Aligned_cols=86 Identities=23% Similarity=0.305 Sum_probs=62.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCCCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGGY 102 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~viDTPG~~~~~~ 102 (243)
++|.++|.+|+|||||+|+|++.. ..++.+|.+|..+......+.+ ..+.++||||+.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 689999999999999999999998 4778888888777665544433 2599999999986543
Q ss_pred CcHHHHHHHHHHHhc-CCCcEEEEEEeC
Q 026113 103 VNYHAIQLIKRFLLN-KTIDVLLYVDRL 129 (243)
Q Consensus 103 ~~~~~~~~~~~~~~~-~~~~~il~v~~~ 129 (243)
..+..- .+++.. ..+|++++|++.
T Consensus 82 ~g~glg---~~fL~~i~~aD~li~VVd~ 106 (364)
T PRK09601 82 KGEGLG---NQFLANIREVDAIVHVVRC 106 (364)
T ss_pred hHHHHH---HHHHHHHHhCCEEEEEEeC
Confidence 322111 122211 489999999775
No 247
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.18 E-value=1.1e-10 Score=91.33 Aligned_cols=57 Identities=28% Similarity=0.381 Sum_probs=47.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~ 97 (243)
.+++++++|.+|+|||||+|+|++...+.++..|++|........ +..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 458999999999999999999999988788888887765444332 346999999996
No 248
>PTZ00258 GTP-binding protein; Provisional
Probab=99.17 E-value=2e-10 Score=100.15 Aligned_cols=86 Identities=24% Similarity=0.313 Sum_probs=65.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-----------------CeEEEEEeCCCCCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-----------------GFTLNIVDTPGLIE 99 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~viDTPG~~~ 99 (243)
...++|.++|.+|+|||||+|+|++... .++++|.+|..+......+. +.++.++||||+..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 4678999999999999999999998874 77888888887776665544 23599999999975
Q ss_pred CCCCcH----HHHHHHHHHHhcCCCcEEEEEEeC
Q 026113 100 GGYVNY----HAIQLIKRFLLNKTIDVLLYVDRL 129 (243)
Q Consensus 100 ~~~~~~----~~~~~~~~~~~~~~~~~il~v~~~ 129 (243)
...... ..+..+ ..+|++++|++.
T Consensus 98 ga~~g~gLg~~fL~~I------r~aD~il~VVd~ 125 (390)
T PTZ00258 98 GASEGEGLGNAFLSHI------RAVDGIYHVVRA 125 (390)
T ss_pred CCcchhHHHHHHHHHH------HHCCEEEEEEeC
Confidence 443322 223333 489999999775
No 249
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=2.2e-10 Score=93.55 Aligned_cols=183 Identities=19% Similarity=0.214 Sum_probs=109.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccccc---CCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHH---HHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVS---TFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYH---AIQ 109 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~---~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~---~~~ 109 (243)
-.++|+.||.||.|||||+..|++....... ..|........+...-.+ .+++|+||.|++|.-..++. +.+
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 4699999999999999999999988742211 111111112222222333 37999999999975322211 111
Q ss_pred --------HHH------HHH---hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCC
Q 026113 110 --------LIK------RFL---LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 172 (243)
Q Consensus 110 --------~~~------~~~---~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~ 172 (243)
++. +.+ -+...|++||.+......+...+...++.+... .++|-|+-|+|-.
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk------VNIIPvIAKaDti----- 189 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK------VNIIPVIAKADTI----- 189 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh------hhhHHHHHHhhhh-----
Confidence 111 111 135789999997776555666666666555543 6899999999865
Q ss_pred CHHHHHHhhhHHHHHHHccccCCccc---cc--------cCCCccchhhhcCCCCCCCcCccccccCCCC
Q 026113 173 DYEVFCSKRSEALLKFVSPSTWMKKK---DI--------QGSFVPVVLVENSGRCAKNENDEKVSQLPDN 231 (243)
Q Consensus 173 ~~~~~~~~~~~~l~~~i~~~~~~~~~---~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~lp~~ 231 (243)
+..+..+-+.+.+.++...+.....+ +. ....+|..++.+....-.+..+-+++|.|-+
T Consensus 190 sK~eL~~FK~kimsEL~sngv~IYqfPtDdetva~~N~~mn~~lPFAVvGSte~vKvgnkmvraRqyPwG 259 (406)
T KOG3859|consen 190 SKEELKRFKIKIMSELVSNGVQIYQFPTDDETVAKANSEMNHSLPFAVVGSTEEVKVGNKMVKARQYPWG 259 (406)
T ss_pred hHHHHHHHHHHHHHHHHhcCceeeeccchHHHHHHHHHHhhcCCceeEecchHhhhhhhhhhhhccCCCC
Confidence 34444455567777887776553222 11 1145677777555544444455566666544
No 250
>PRK00007 elongation factor G; Reviewed
Probab=99.17 E-value=6.5e-10 Score=104.66 Aligned_cols=114 Identities=15% Similarity=0.112 Sum_probs=74.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC---CCcc--ccc------------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIG---EKAV--TVS------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg---~~~~--~~~------------~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~ 101 (243)
-.+|+++|..++|||||+|+|+. .... .+. .....|.+.......+.+..+.++||||+.+.
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f- 88 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF- 88 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH-
Confidence 46999999999999999999973 2110 011 11233444444556788999999999998532
Q ss_pred CCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+....+ ..+|++++|++... .....+...+..+.+. ..|.++++||+|+.
T Consensus 89 --~~ev~~al------~~~D~~vlVvda~~-g~~~qt~~~~~~~~~~-----~~p~iv~vNK~D~~ 140 (693)
T PRK00007 89 --TIEVERSL------RVLDGAVAVFDAVG-GVEPQSETVWRQADKY-----KVPRIAFVNKMDRT 140 (693)
T ss_pred --HHHHHHHH------HHcCEEEEEEECCC-CcchhhHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 11222222 37899999976543 2445555555554433 26889999999986
No 251
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.17 E-value=1.5e-10 Score=102.49 Aligned_cols=114 Identities=15% Similarity=0.112 Sum_probs=69.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccc--------------------------C------CCCCCCeeEEEEeeeCCe
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVS--------------------------T------FQSEGPRPVMVSRSRAGF 87 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~--------------------------~------~~~~t~~~~~~~~~~~~~ 87 (243)
++|+++|..++|||||+++|+...-.... + ....|.+.......+.+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 68999999999999999999844211000 0 011122333344556788
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 88 ~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.+.++||||..+ +...+...+ ..+|++|+|++.... ......+.+..+ ..++. +++++|+||+|+.
T Consensus 81 ~~~liDtPGh~~-------f~~~~~~~~--~~aD~allVVda~~G-~~~qt~~~~~~~-~~~~~---~~iivviNK~D~~ 146 (406)
T TIGR02034 81 KFIVADTPGHEQ-------YTRNMATGA--STADLAVLLVDARKG-VLEQTRRHSYIA-SLLGI---RHVVLAVNKMDLV 146 (406)
T ss_pred EEEEEeCCCHHH-------HHHHHHHHH--hhCCEEEEEEECCCC-CccccHHHHHHH-HHcCC---CcEEEEEEecccc
Confidence 999999999732 222222222 489999999776532 222233333222 23332 5799999999985
No 252
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.16 E-value=9.4e-10 Score=100.12 Aligned_cols=115 Identities=11% Similarity=0.121 Sum_probs=71.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC--cccccCC-------------------CCCCCeeEEEEeeeCCeEEEEEeCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK--AVTVSTF-------------------QSEGPRPVMVSRSRAGFTLNIVDTPG 96 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~--~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~viDTPG 96 (243)
+..+|+++|..++|||||+++|+... +...+.. .+.+.........+.+..+.+|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 56899999999999999999986321 1111000 01111222345567889999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+.+.. .+..+.+ ..+|++|+|++... ........+++.. .. ...|+++++||+|+.
T Consensus 90 ~~df~---~~~~~~l------~~aD~aIlVvDa~~-gv~~~t~~l~~~~-~~----~~~PiivviNKiD~~ 145 (527)
T TIGR00503 90 HEDFS---EDTYRTL------TAVDNCLMVIDAAK-GVETRTRKLMEVT-RL----RDTPIFTFMNKLDRD 145 (527)
T ss_pred hhhHH---HHHHHHH------HhCCEEEEEEECCC-CCCHHHHHHHHHH-Hh----cCCCEEEEEECcccc
Confidence 95321 2222233 38999999976643 2333333333322 22 136999999999974
No 253
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.15 E-value=3.9e-10 Score=104.04 Aligned_cols=113 Identities=15% Similarity=0.190 Sum_probs=66.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccc-----cC---------CCCCCCeeEEEEeee---CC--eEEEEEeCCCCCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTV-----ST---------FQSEGPRPVMVSRSR---AG--FTLNIVDTPGLIEG 100 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~-----~~---------~~~~t~~~~~~~~~~---~~--~~~~viDTPG~~~~ 100 (243)
-+|+++|..++|||||+++|+....... .. ..+.|.........+ ++ ..+.+|||||+.+.
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 5899999999999999999986531110 00 012222222222333 22 57899999999643
Q ss_pred CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+ +.+++ ..+|++++|++++.. ........+..... . ..|+++|+||+|+.
T Consensus 84 ---~~~----v~~~l--~~aD~aILVvDat~g-~~~qt~~~~~~~~~---~--~ipiIiViNKiDl~ 135 (595)
T TIGR01393 84 ---SYE----VSRSL--AACEGALLLVDAAQG-IEAQTLANVYLALE---N--DLEIIPVINKIDLP 135 (595)
T ss_pred ---HHH----HHHHH--HhCCEEEEEecCCCC-CCHhHHHHHHHHHH---c--CCCEEEEEECcCCC
Confidence 122 22333 388999999776532 22222222211111 1 25899999999984
No 254
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.15 E-value=1.3e-09 Score=100.83 Aligned_cols=113 Identities=19% Similarity=0.129 Sum_probs=70.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcc--cccCCCCCCCeeEEEEe-eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAV--TVSTFQSEGPRPVMVSR-SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~--~~~~~~~~t~~~~~~~~-~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
-|.++|..++|||||+++|+|.+.. ......+.|........ ..++..+.+|||||.. .+...+...+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-------~fi~~m~~g~-- 72 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-------KFLSNMLAGV-- 72 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-------HHHHHHHHHh--
Confidence 5889999999999999999986421 11111222322211112 2256789999999983 2222333222
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++.+. .......+.+..+.. ++. .++++|+||+|+.
T Consensus 73 ~~~D~~lLVVda~e-g~~~qT~ehl~il~~-lgi---~~iIVVlNKiDlv 117 (614)
T PRK10512 73 GGIDHALLVVACDD-GVMAQTREHLAILQL-TGN---PMLTVALTKADRV 117 (614)
T ss_pred hcCCEEEEEEECCC-CCcHHHHHHHHHHHH-cCC---CeEEEEEECCccC
Confidence 48999999987764 234444555544433 332 3578999999985
No 255
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.14 E-value=1.3e-09 Score=99.27 Aligned_cols=115 Identities=11% Similarity=0.120 Sum_probs=70.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC--cccccCC------C-------------CCCCeeEEEEeeeCCeEEEEEeCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK--AVTVSTF------Q-------------SEGPRPVMVSRSRAGFTLNIVDTPG 96 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~--~~~~~~~------~-------------~~t~~~~~~~~~~~~~~~~viDTPG 96 (243)
+..+|+++|..++|||||+++|+... +...+.. . +.+.........+.+..+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 46799999999999999999997321 1110000 0 1111222345667889999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+.. .+....+ ..+|++++|++... ........+++... . ...|+++++||+|+.
T Consensus 89 ~~df~---~~~~~~l------~~aD~aIlVvDa~~-gv~~~t~~l~~~~~-~----~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 89 HEDFS---EDTYRTL------TAVDSALMVIDAAK-GVEPQTRKLMEVCR-L----RDTPIFTFINKLDRD 144 (526)
T ss_pred chhhH---HHHHHHH------HHCCEEEEEEecCC-CCCHHHHHHHHHHH-h----cCCCEEEEEECCccc
Confidence 85432 2222233 37899999976643 23332333332222 2 236999999999974
No 256
>PRK13351 elongation factor G; Reviewed
Probab=99.11 E-value=1.3e-09 Score=102.73 Aligned_cols=115 Identities=16% Similarity=0.111 Sum_probs=72.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcc--c---------ccC------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAV--T---------VST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~--~---------~~~------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~ 100 (243)
...+|+++|..|+|||||+++|+...-. . ..+ ....|.........+.+..+.+|||||..+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 3579999999999999999999853210 0 000 0112223333456678899999999998542
Q ss_pred CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
. .++...+ ..+|++++|++.... ........+..+... ..|+++|+||+|+.
T Consensus 87 ~---~~~~~~l------~~aD~~ilVvd~~~~-~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~ 138 (687)
T PRK13351 87 T---GEVERSL------RVLDGAVVVFDAVTG-VQPQTETVWRQADRY-----GIPRLIFINKMDRV 138 (687)
T ss_pred H---HHHHHHH------HhCCEEEEEEeCCCC-CCHHHHHHHHHHHhc-----CCCEEEEEECCCCC
Confidence 1 1222222 388999999776532 233333333333221 36999999999975
No 257
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.11 E-value=2.7e-11 Score=88.18 Aligned_cols=121 Identities=15% Similarity=0.111 Sum_probs=76.5
Q ss_pred EEEcCCCCcHHHHHHHHhCCCcccccCCCC-CCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113 43 LVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-EGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (243)
Q Consensus 43 llvG~~g~GKSSlin~llg~~~~~~~~~~~-~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~ 119 (243)
+++|.+++|||.|+-.+-.... ..+.+-+ .+.+........++ .++++|||+|+...+... ..|. +.
T Consensus 1 mllgds~~gktcllir~kdgaf-l~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt-------~ayy--rd 70 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAF-LAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVT-------HAYY--RD 70 (192)
T ss_pred CccccCccCceEEEEEeccCce-ecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhh-------Hhhh--cc
Confidence 4789999999998755443321 1122111 12222222233444 479999999995433222 1122 58
Q ss_pred CcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 120 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
+|++|+++++.+....+....|+..+.+..... ..+++++||+|+.+++.+..+
T Consensus 71 a~allllydiankasfdn~~~wlsei~ey~k~~--v~l~llgnk~d~a~er~v~~d 124 (192)
T KOG0083|consen 71 ADALLLLYDIANKASFDNCQAWLSEIHEYAKEA--VALMLLGNKCDLAHERAVKRD 124 (192)
T ss_pred cceeeeeeecccchhHHHHHHHHHHHHHHHHhh--HhHhhhccccccchhhccccc
Confidence 999999999876555677888998888764433 578999999999765554433
No 258
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.11 E-value=3.6e-10 Score=96.59 Aligned_cols=82 Identities=18% Similarity=0.242 Sum_probs=58.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee------------------------CCeEEEEEeCCCC
Q 026113 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------------------------AGFTLNIVDTPGL 97 (243)
Q Consensus 42 IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~~~viDTPG~ 97 (243)
|+++|.+++|||||+|+|++... .+..+|.+|..+......+ ...++.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 57999999999999999998874 6777777776655433221 2357999999999
Q ss_pred CCCCCCc----HHHHHHHHHHHhcCCCcEEEEEEeCC
Q 026113 98 IEGGYVN----YHAIQLIKRFLLNKTIDVLLYVDRLD 130 (243)
Q Consensus 98 ~~~~~~~----~~~~~~~~~~~~~~~~~~il~v~~~d 130 (243)
....... ..+++.++ ++|++++|+++.
T Consensus 80 v~ga~~~~glg~~fL~~ir------~aD~ii~Vvd~~ 110 (318)
T cd01899 80 VPGAHEGKGLGNKFLDDLR------DADALIHVVDAS 110 (318)
T ss_pred CCCccchhhHHHHHHHHHH------HCCEEEEEEeCC
Confidence 6443222 23333343 899999998774
No 259
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.11 E-value=3.5e-09 Score=86.51 Aligned_cols=108 Identities=21% Similarity=0.318 Sum_probs=69.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcc-cccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAV-TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..+..|+++|.+|+|||||+|.|++.... ......+ +. ......+..+.++||||.. ....+.+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g----~i-~i~~~~~~~i~~vDtPg~~------~~~l~~a---- 101 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG----PI-TVVTGKKRRLTFIECPNDI------NAMIDIA---- 101 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc----cE-EEEecCCceEEEEeCCchH------HHHHHHH----
Confidence 46788999999999999999999976311 1111111 11 1122367789999999852 2333333
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc-EEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~ 167 (243)
..+|++++|++... .....+..++..+... | .| +++|+||+|+.
T Consensus 102 --k~aDvVllviDa~~-~~~~~~~~i~~~l~~~-g----~p~vi~VvnK~D~~ 146 (225)
T cd01882 102 --KVADLVLLLIDASF-GFEMETFEFLNILQVH-G----FPRVMGVLTHLDLF 146 (225)
T ss_pred --HhcCEEEEEEecCc-CCCHHHHHHHHHHHHc-C----CCeEEEEEeccccC
Confidence 37899999966643 2444555555555432 2 46 45699999986
No 260
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.11 E-value=8.9e-10 Score=98.56 Aligned_cols=117 Identities=16% Similarity=0.181 Sum_probs=70.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCc--cc----------------------ccC------CCCCCCeeEEEEeeeCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKA--VT----------------------VST------FQSEGPRPVMVSRSRAG 86 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~--~~----------------------~~~------~~~~t~~~~~~~~~~~~ 86 (243)
+..++|+++|..++|||||+.+|+...- .. ..+ ....|.+.......+++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 4679999999999999999998874210 00 000 11122233334456778
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCccc------ChhHHHHHHHHHHHhcccccccEEEE
Q 026113 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV------DNLDKQITRAITDNFGEQIWKRALIV 160 (243)
Q Consensus 87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~------~~~~~~~l~~l~~~~~~~~~~~~ivV 160 (243)
..+.++||||.. ++...+...+ ..+|++++|++.+.--+ ....++.+. +...+|. .++|++
T Consensus 85 ~~i~lIDtPGh~-------~f~~~~~~g~--~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~~gi---~~iiv~ 151 (446)
T PTZ00141 85 YYFTIIDAPGHR-------DFIKNMITGT--SQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFTLGV---KQMIVC 151 (446)
T ss_pred eEEEEEECCChH-------HHHHHHHHhh--hhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHHcCC---CeEEEE
Confidence 899999999974 2222333222 48999999977653211 112222232 2333332 468899
Q ss_pred EeCCCC
Q 026113 161 LTHAQL 166 (243)
Q Consensus 161 ~tk~D~ 166 (243)
+||+|.
T Consensus 152 vNKmD~ 157 (446)
T PTZ00141 152 INKMDD 157 (446)
T ss_pred EEcccc
Confidence 999995
No 261
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.10 E-value=5.2e-10 Score=94.64 Aligned_cols=66 Identities=21% Similarity=0.369 Sum_probs=52.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH 106 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~ 106 (243)
..++++++|.+|+||||++|+|++.....++..+++|....... .+..+.++||||+..+...+++
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~---~~~~~~l~DtPGi~~~~~~~~~ 185 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIK---LGKGLELLDTPGILWPKLEDQE 185 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEE---eCCcEEEEECCCcCCCCCCcHH
Confidence 56899999999999999999999998777777777776544322 2446899999999877655544
No 262
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.09 E-value=1.1e-09 Score=100.88 Aligned_cols=114 Identities=15% Similarity=0.095 Sum_probs=67.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee------CC------------eEEEEEeCCCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------AG------------FTLNIVDTPGLIE 99 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~------~~------------~~~~viDTPG~~~ 99 (243)
++..|+++|.+++|||||+|+|.+..+..... ...|.+........ .+ ..+.+|||||+.+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~-g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEA-GGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCC-CceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 56789999999999999999999876432111 11111100000000 00 1278999999853
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
... . ..+.. ..+|++++|++++. .........+..+.. ...|+++++||+|+.
T Consensus 84 f~~---~----~~~~~--~~aD~~IlVvDa~~-g~~~qt~e~i~~~~~-----~~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 FTN---L----RKRGG--ALADIAILVVDINE-GFQPQTIEAINILKR-----RKTPFVVAANKIDRI 136 (586)
T ss_pred HHH---H----HHHhH--hhCCEEEEEEECCC-CCCHhHHHHHHHHHH-----cCCCEEEEEECcCCc
Confidence 311 1 11111 47999999977754 233444444544433 136899999999984
No 263
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.08 E-value=1.6e-09 Score=95.99 Aligned_cols=118 Identities=18% Similarity=0.105 Sum_probs=68.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccc--ccCCCCCCCeeE----------------EEEe----e------eCCeE
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVT--VSTFQSEGPRPV----------------MVSR----S------RAGFT 88 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~--~~~~~~~t~~~~----------------~~~~----~------~~~~~ 88 (243)
+..++|+++|..++|||||+++|.+..... .......|.... .+.. . ..+..
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 357999999999999999999998653210 000000010000 0000 0 12468
Q ss_pred EEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 89 LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 89 ~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+.+|||||.. ++...+.... ..+|++++|++.+.........+.+..+ ..++. +++++|+||+|+.
T Consensus 82 i~liDtPGh~-------~f~~~~~~g~--~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi---~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 82 VSFVDAPGHE-------TLMATMLSGA--ALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGI---KNIVIVQNKIDLV 147 (406)
T ss_pred EEEEECCCHH-------HHHHHHHHHH--HHCCEEEEEEECCCCccccchHHHHHHH-HHcCC---CeEEEEEEccccC
Confidence 9999999983 2222232222 3789999997776421123333344333 33332 5799999999986
No 264
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.07 E-value=8.2e-10 Score=92.96 Aligned_cols=65 Identities=22% Similarity=0.369 Sum_probs=50.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY 105 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~ 105 (243)
..++++++|.+|+||||++|+|++.....++..+++|...+.... +..+.++||||+..+...+.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~~~~~~~~~ 181 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL---SDGLELLDTPGILWPKFEDQ 181 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe---CCCEEEEECCCcccCCCCch
Confidence 468999999999999999999999887677777777765543322 34689999999976654443
No 265
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.07 E-value=6.4e-09 Score=80.18 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=74.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccccc----CCCC-----CCCeeEEEEeeeCC-eEEEEEeCCCCCCCCCCcHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS----TFQS-----EGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNYH 106 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~----~~~~-----~t~~~~~~~~~~~~-~~~~viDTPG~~~~~~~~~~ 106 (243)
....||+++|..++||||++.++.......+. .... +|...-.......+ ..+.++||||+ +
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq--------~ 79 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQ--------E 79 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCc--------H
Confidence 35789999999999999999999977532221 1111 11111112233444 78999999999 4
Q ss_pred HHHHHHHHHhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 107 AIQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 107 ~~~~~~~~~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++.+.+.++ .++...+++ +|+++ .+..+..++..+..... .|++|..||.|+.
T Consensus 80 RF~fm~~~l~-~ga~gaivl--VDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~ 134 (187)
T COG2229 80 RFKFMWEILS-RGAVGAIVL--VDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLF 134 (187)
T ss_pred HHHHHHHHHh-CCcceEEEE--EecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccC
Confidence 4555555444 467777777 44433 33355666666665533 6999999999996
No 266
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.07 E-value=6e-10 Score=85.69 Aligned_cols=58 Identities=26% Similarity=0.440 Sum_probs=46.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~ 97 (243)
....+++++|.+|+||||++|+|++.....++..+++|........ +..+.++||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 3678999999999999999999999876667777777766554332 356999999996
No 267
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.05 E-value=2.8e-10 Score=90.52 Aligned_cols=70 Identities=24% Similarity=0.393 Sum_probs=46.9
Q ss_pred HHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCc--------ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCC
Q 026113 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKA--------VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPG 96 (243)
Q Consensus 25 l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~--------~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG 96 (243)
+.++.+.+......+.+++++|.+|+|||||+|+|++... ..++..+++|........ +..+.+|||||
T Consensus 113 i~eL~~~l~~~l~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~~~DtPG 189 (190)
T cd01855 113 VEELINAIKKLAKKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL---GNGKKLYDTPG 189 (190)
T ss_pred HHHHHHHHHHHhhcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec---CCCCEEEeCcC
Confidence 3334444443333567999999999999999999998643 234455555555444333 22589999999
Q ss_pred C
Q 026113 97 L 97 (243)
Q Consensus 97 ~ 97 (243)
+
T Consensus 190 ~ 190 (190)
T cd01855 190 I 190 (190)
T ss_pred C
Confidence 6
No 268
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.05 E-value=1.3e-09 Score=95.95 Aligned_cols=85 Identities=20% Similarity=0.275 Sum_probs=60.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee------------------------eCCeEEEEEeC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS------------------------RAGFTLNIVDT 94 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~------------------------~~~~~~~viDT 94 (243)
+++|+++|.+|+|||||+|+|++... .+..++.+|..+...... ....+++++||
T Consensus 1 ~~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 1 MITIGLVGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 36899999999999999999998874 556777777666553322 11246899999
Q ss_pred CCCCCCCCCc----HHHHHHHHHHHhcCCCcEEEEEEeCC
Q 026113 95 PGLIEGGYVN----YHAIQLIKRFLLNKTIDVLLYVDRLD 130 (243)
Q Consensus 95 PG~~~~~~~~----~~~~~~~~~~~~~~~~~~il~v~~~d 130 (243)
||+....... ..+++.++ ++|++++|++..
T Consensus 80 aGl~~ga~~g~glg~~fL~~ir------~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDDLR------QADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHHHHHH------HCCEEEEEEeCC
Confidence 9986543222 23333443 899999998763
No 269
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.05 E-value=5.2e-09 Score=78.16 Aligned_cols=125 Identities=15% Similarity=0.186 Sum_probs=76.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh-CCCcccccCCCCCCCeeEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSII-GEKAVTVSTFQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIK 112 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~ll-g~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~viDTPG~~~~~~~~~~~~~~~~ 112 (243)
.+..|++++|.-++|||+++..++ |..+ .......+-.+......+. ....+.+.||.|+.+....- =+
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~-~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eL------pr 79 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHV-PGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQEL------PR 79 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCC-CCCccccchhhheeEeeecCCChhheEEEeecccccCchhhh------hH
Confidence 467999999999999999998877 4443 2222222222233322222 22479999999997652211 12
Q ss_pred HHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHh---cccccccEEEEEeCCCCCCCCCCCH
Q 026113 113 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNF---GEQIWKRALIVLTHAQLSLPDRLDY 174 (243)
Q Consensus 113 ~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~---~~~~~~~~ivV~tk~D~~~~~~~~~ 174 (243)
.|+ .-+|++++|++..... ..+.++.+++.. ....-.|++++.|++|+.++...+.
T Consensus 80 hy~--q~aDafVLVYs~~d~e----Sf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~ 138 (198)
T KOG3883|consen 80 HYF--QFADAFVLVYSPMDPE----SFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDM 138 (198)
T ss_pred hHh--ccCceEEEEecCCCHH----HHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCH
Confidence 333 3789999998775432 233333333332 2223369999999999976655443
No 270
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.03 E-value=2.9e-09 Score=98.40 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=66.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccc--------c------CCCCCCCeeEEEEeeeC-----CeEEEEEeCCCCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTV--------S------TFQSEGPRPVMVSRSRA-----GFTLNIVDTPGLIE 99 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~--------~------~~~~~t~~~~~~~~~~~-----~~~~~viDTPG~~~ 99 (243)
--+|+++|..++|||||+.+|+...-... . ...+.|.........+. +..+.+|||||+.+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 45899999999999999999986421100 0 00122222222223332 46799999999964
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.. .+ +.+++ ..+|++|+|++.... ........+... ... ..|+++|+||+|+.
T Consensus 87 F~---~~----v~~sl--~~aD~aILVVDas~g-v~~qt~~~~~~~---~~~--~lpiIvViNKiDl~ 139 (600)
T PRK05433 87 FS---YE----VSRSL--AACEGALLVVDASQG-VEAQTLANVYLA---LEN--DLEIIPVLNKIDLP 139 (600)
T ss_pred HH---HH----HHHHH--HHCCEEEEEEECCCC-CCHHHHHHHHHH---HHC--CCCEEEEEECCCCC
Confidence 32 22 22333 378999999776531 222222222222 111 25899999999984
No 271
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.03 E-value=1.7e-09 Score=95.98 Aligned_cols=121 Identities=17% Similarity=0.097 Sum_probs=68.0
Q ss_pred hcCCCceEEEEEcCCCCcHHHHHHHHhCCCcc--cccCCCCCCCeeEE----------------EEee--e---C-----
Q 026113 34 QENVNTLTILVMGKGGVGKSSTVNSIIGEKAV--TVSTFQSEGPRPVM----------------VSRS--R---A----- 85 (243)
Q Consensus 34 ~~~~~~~~IllvG~~g~GKSSlin~llg~~~~--~~~~~~~~t~~~~~----------------~~~~--~---~----- 85 (243)
++.+..++|+++|..++|||||+.+|.+.... ........|..... +... . .
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 34457799999999999999999999764210 00000111111100 0000 0 0
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (243)
Q Consensus 86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 165 (243)
...+.+|||||.. .+...+... ...+|++++|+++............+..+. ..+. .++++|+||+|
T Consensus 84 ~~~i~liDtPG~~-------~f~~~~~~~--~~~~D~~llVVDa~~~~~~~~t~~~l~~l~-~~~i---~~iiVVlNK~D 150 (411)
T PRK04000 84 LRRVSFVDAPGHE-------TLMATMLSG--AALMDGAILVIAANEPCPQPQTKEHLMALD-IIGI---KNIVIVQNKID 150 (411)
T ss_pred ccEEEEEECCCHH-------HHHHHHHHH--HhhCCEEEEEEECCCCCCChhHHHHHHHHH-HcCC---CcEEEEEEeec
Confidence 2579999999973 222222211 147899999977753211233333443332 2221 47999999999
Q ss_pred CC
Q 026113 166 LS 167 (243)
Q Consensus 166 ~~ 167 (243)
+.
T Consensus 151 l~ 152 (411)
T PRK04000 151 LV 152 (411)
T ss_pred cc
Confidence 86
No 272
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.2e-09 Score=95.33 Aligned_cols=118 Identities=16% Similarity=0.235 Sum_probs=78.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEE--------------------------------------
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM-------------------------------------- 79 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~-------------------------------------- 79 (243)
...||++.|++++||||++|+++..++-+.+..+.+..-+..
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 678999999999999999999998865443322211110000
Q ss_pred ----EEeeeC-C------eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHH
Q 026113 80 ----VSRSRA-G------FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDN 148 (243)
Q Consensus 80 ----~~~~~~-~------~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~ 148 (243)
....+. + ..+.++|.||+.-+...+. .+-+++ ..+|++++|...++ .++..+++++....+.
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~ts----wid~~c--ldaDVfVlV~NaEn-tlt~sek~Ff~~vs~~ 260 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTS----WIDSFC--LDADVFVLVVNAEN-TLTLSEKQFFHKVSEE 260 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhH----HHHHHh--hcCCeEEEEecCcc-HhHHHHHHHHHHhhcc
Confidence 000111 1 1488999999965443332 233333 48999999966654 5888888888777665
Q ss_pred hcccccccEEEEEeCCCCC
Q 026113 149 FGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 149 ~~~~~~~~~ivV~tk~D~~ 167 (243)
..++.|+.||||..
T Consensus 261 -----KpniFIlnnkwDas 274 (749)
T KOG0448|consen 261 -----KPNIFILNNKWDAS 274 (749)
T ss_pred -----CCcEEEEechhhhh
Confidence 35788889999986
No 273
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.01 E-value=6.7e-09 Score=98.21 Aligned_cols=115 Identities=13% Similarity=0.180 Sum_probs=69.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccc---------ccCC------CCCCCeeE----EEEeeeCCeEEEEEeCCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT---------VSTF------QSEGPRPV----MVSRSRAGFTLNIVDTPGLI 98 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~---------~~~~------~~~t~~~~----~~~~~~~~~~~~viDTPG~~ 98 (243)
.-.+|+++|..++|||||+++|+...-.. ..+. ...|.... .....+.+..+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 45799999999999999999997431000 0010 11121111 12245667889999999997
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+.. .+....+ ..+|++|+|++... .........++...+ . ..|.++|+||+|..
T Consensus 98 ~f~---~~~~~al------~~aD~~llVvda~~-g~~~~t~~~~~~~~~---~--~~p~ivviNKiD~~ 151 (720)
T TIGR00490 98 DFG---GDVTRAM------RAVDGAIVVVCAVE-GVMPQTETVLRQALK---E--NVKPVLFINKVDRL 151 (720)
T ss_pred ccH---HHHHHHH------HhcCEEEEEEecCC-CCCccHHHHHHHHHH---c--CCCEEEEEEChhcc
Confidence 532 2333333 38899999977643 123333333333222 1 25788999999975
No 274
>PTZ00416 elongation factor 2; Provisional
Probab=99.01 E-value=5.7e-09 Score=100.00 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=69.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC---------------CCCCeeEEEEeeeC----------CeEEEEE
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ---------------SEGPRPVMVSRSRA----------GFTLNIV 92 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~---------------~~t~~~~~~~~~~~----------~~~~~vi 92 (243)
+-.+|+++|..++|||||+++|+...-....... +.|.........+. +..+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 4569999999999999999999964321110000 01111111122232 5579999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 93 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 93 DTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
||||..+. ...+...+ ..+|++++|++... .........++.+... ..|+++++||+|+.
T Consensus 98 DtPG~~~f-------~~~~~~al--~~~D~ailVvda~~-g~~~~t~~~~~~~~~~-----~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDF-------SSEVTAAL--RVTDGALVVVDCVE-GVCVQTETVLRQALQE-----RIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhH-------HHHHHHHH--hcCCeEEEEEECCC-CcCccHHHHHHHHHHc-----CCCEEEEEEChhhh
Confidence 99999542 22222222 48999999977643 2444444444444332 26999999999984
No 275
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.00 E-value=1.3e-09 Score=82.59 Aligned_cols=56 Identities=34% Similarity=0.481 Sum_probs=42.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~ 98 (243)
-+++++|.+|+||||++|++++.....++..++.|....... .+ ..+.+|||||+.
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~i~DtpG~~ 139 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIF--LT-PTITLCDCPGLV 139 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEE--eC-CCEEEEECCCcC
Confidence 389999999999999999999988655655555555443322 22 268999999985
No 276
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=2.4e-09 Score=82.54 Aligned_cols=125 Identities=15% Similarity=0.188 Sum_probs=80.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
+.++.+|+++|-.||||||+++.+--.++..+ .| |.........+.+..+.+||.-|+...+. ..+.|+
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt--vP--TiGfnVE~v~ykn~~f~vWDvGGq~k~R~-------lW~~Y~ 82 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--VP--TIGFNVETVEYKNISFTVWDVGGQEKLRP-------LWKHYF 82 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC--CC--ccccceeEEEEcceEEEEEecCCCccccc-------chhhhc
Confidence 45789999999999999999998776654333 23 44445566677899999999999943322 122233
Q ss_pred hcCCCcEEEEEEeC-CCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHH
Q 026113 116 LNKTIDVLLYVDRL-DVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (243)
Q Consensus 116 ~~~~~~~il~v~~~-d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~ 177 (243)
.+.++++||++- |..|+.+...+....+...- -...|+++..||.|+. +..+..+.
T Consensus 83 --~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~--l~~~~llv~aNKqD~~--~als~~ei 139 (181)
T KOG0070|consen 83 --QNTQGLIFVVDSSDRERIEEAKEELHRMLAEPE--LRNAPLLVFANKQDLP--GALSAAEI 139 (181)
T ss_pred --cCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc--cCCceEEEEechhhcc--ccCCHHHH
Confidence 488999999543 33334332222222222221 1236999999999984 55554433
No 277
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.97 E-value=2.9e-09 Score=91.38 Aligned_cols=75 Identities=24% Similarity=0.385 Sum_probs=56.8
Q ss_pred HHHHhhhhcC--CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 026113 27 ELLGKLKQEN--VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 104 (243)
Q Consensus 27 ~~~~~~~~~~--~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~ 104 (243)
+.++.+.+.+ ....+++++|.+|+||||+||+|+|...+.++..|+.|...+.... +..+.++||||+.-....+
T Consensus 118 ~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~---~~~i~LlDtPGii~~~~~~ 194 (322)
T COG1161 118 EKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKL---DDGIYLLDTPGIIPPKFDD 194 (322)
T ss_pred HHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEc---CCCeEEecCCCcCCCCccc
Confidence 4445555443 3458999999999999999999999998888999987765444332 2348999999998666555
No 278
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.97 E-value=3.3e-09 Score=82.92 Aligned_cols=58 Identities=26% Similarity=0.396 Sum_probs=44.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~ 98 (243)
..++++++|.+|+||||++|++++.....++..+++|.....+... ..+.+|||||+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~~ 171 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGIL 171 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCCC
Confidence 4579999999999999999999998765566666666554443332 568999999973
No 279
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.96 E-value=1e-08 Score=91.70 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=71.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcc--------------c----------ccC------CCCCCCeeEEEEeeeCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAV--------------T----------VST------FQSEGPRPVMVSRSRAG 86 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~--------------~----------~~~------~~~~t~~~~~~~~~~~~ 86 (243)
+..++|+++|..++|||||+-+|+...-. . ..+ ....|.+.......+.+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 46799999999999999999888732100 0 000 01122233334455678
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccC------hhHHHHHHHHHHHhcccccccEEEE
Q 026113 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD------NLDKQITRAITDNFGEQIWKRALIV 160 (243)
Q Consensus 87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~------~~~~~~l~~l~~~~~~~~~~~~ivV 160 (243)
+.+.++||||.. ++...+...+ ..+|+.++|++.+...+. ..-++.+ .+....|. .++|++
T Consensus 85 ~~i~liDtPGh~-------df~~~~~~g~--~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~-~~~~~~gi---~~iIV~ 151 (447)
T PLN00043 85 YYCTVIDAPGHR-------DFIKNMITGT--SQADCAVLIIDSTTGGFEAGISKDGQTREHA-LLAFTLGV---KQMICC 151 (447)
T ss_pred EEEEEEECCCHH-------HHHHHHHhhh--hhccEEEEEEEcccCceecccCCCchHHHHH-HHHHHcCC---CcEEEE
Confidence 899999999983 3333444333 489999999777542121 1112222 22223332 468999
Q ss_pred EeCCCCC
Q 026113 161 LTHAQLS 167 (243)
Q Consensus 161 ~tk~D~~ 167 (243)
+||+|+.
T Consensus 152 vNKmD~~ 158 (447)
T PLN00043 152 CNKMDAT 158 (447)
T ss_pred EEcccCC
Confidence 9999974
No 280
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.93 E-value=5.4e-09 Score=80.36 Aligned_cols=72 Identities=22% Similarity=0.274 Sum_probs=47.0
Q ss_pred HHHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 026113 23 TKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (243)
Q Consensus 23 ~~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~ 97 (243)
..|.+.+....+......+++++|.+|+||||++|.+.+.....++..++.|.... ....+..+.+|||||+
T Consensus 85 ~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~DtpGi 156 (156)
T cd01859 85 KILRRTIKELAKIDGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQ---LVKITSKIYLLDTPGV 156 (156)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeE---EEEcCCCEEEEECcCC
Confidence 33444443333333457899999999999999999999876544444444433222 1122346899999996
No 281
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.93 E-value=1.5e-08 Score=75.22 Aligned_cols=116 Identities=12% Similarity=0.120 Sum_probs=72.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
.++.+.++|-.++||||++|.+..... ...-.| |.....+..+.....+.+||.||+... . .+.++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~-~edmip--tvGfnmrk~tkgnvtiklwD~gGq~rf---r-----smWeryc- 86 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQY-LEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRF---R-----SMWERYC- 86 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccc-hhhhcc--cccceeEEeccCceEEEEEecCCCccH---H-----HHHHHHh-
Confidence 579999999999999999998875331 111112 333445556667779999999999422 2 2222222
Q ss_pred CCCcEEEEEEeCCCc-ccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
++.++|+||++.... ..+....+....+.+. . -...|+++++||.|+.
T Consensus 87 R~v~aivY~VDaad~~k~~~sr~EL~~LL~k~-~-l~gip~LVLGnK~d~~ 135 (186)
T KOG0075|consen 87 RGVSAIVYVVDAADPDKLEASRSELHDLLDKP-S-LTGIPLLVLGNKIDLP 135 (186)
T ss_pred hcCcEEEEEeecCCcccchhhHHHHHHHhcch-h-hcCCcEEEecccccCc
Confidence 599999999665322 2333222222222221 1 1237999999999974
No 282
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.92 E-value=1e-07 Score=77.78 Aligned_cols=102 Identities=19% Similarity=0.118 Sum_probs=62.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC-Ccccc-cCCCCCCCeeEEEEeee---CCeEEEEEeCCCCCCCCCCc-H--HHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE-KAVTV-STFQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVN-Y--HAIQ 109 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~-~~~~~-~~~~~~t~~~~~~~~~~---~~~~~~viDTPG~~~~~~~~-~--~~~~ 109 (243)
+-.-|.++|.+++|||+|+|.|+|. ..+.+ ....++|.......... .+..+.++||||+.+..... . ..+.
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 4567899999999999999999998 23333 33345555444444333 35789999999998776543 1 1111
Q ss_pred HHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHH
Q 026113 110 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAIT 146 (243)
Q Consensus 110 ~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~ 146 (243)
.+. .--.+++||....+ ....+...+..+.
T Consensus 86 ~l~----~llss~~i~n~~~~---~~~~~~~~l~~~~ 115 (224)
T cd01851 86 ALA----TLLSSVLIYNSWET---ILGDDLAALMGLL 115 (224)
T ss_pred HHH----HHHhCEEEEeccCc---ccHHHHHHHHHHH
Confidence 111 11367888884332 2344444444443
No 283
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=8.8e-10 Score=82.74 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCe----eEEEEee-------eCCeEEEEEeCCCCCCCCCCcHHHH
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPR----PVMVSRS-------RAGFTLNIVDTPGLIEGGYVNYHAI 108 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~----~~~~~~~-------~~~~~~~viDTPG~~~~~~~~~~~~ 108 (243)
++.+.+|.+|+||||++...+.... ...-....+.+ ...+... .....+++|||+|+.. +
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F-~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQER--------F 80 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKF-NTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQER--------F 80 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcc-cceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHH--------H
Confidence 4678899999999999988776542 11100001111 1111111 1123699999999943 3
Q ss_pred HHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHh-cccccccEEEEEeCCCCCCCCCCC
Q 026113 109 QLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNF-GEQIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 109 ~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~-~~~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
+.+...+. +.+-.+|+++++.+....-..+.|+..++... .++ .-+++++||+|+.+.+.++
T Consensus 81 RSLTTAFf-RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~--PDivlcGNK~DL~~~R~Vs 143 (219)
T KOG0081|consen 81 RSLTTAFF-RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCEN--PDIVLCGNKADLEDQRVVS 143 (219)
T ss_pred HHHHHHHH-HhhccceEEEeccchHHHHHHHHHHHHHHHhhccCC--CCEEEEcCccchhhhhhhh
Confidence 33322111 47788999988866544445677777776543 232 3699999999997554443
No 284
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.90 E-value=2.6e-08 Score=73.51 Aligned_cols=126 Identities=17% Similarity=0.221 Sum_probs=79.0
Q ss_pred HHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCCCCCcH
Q 026113 27 ELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNY 105 (243)
Q Consensus 27 ~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~viDTPG~~~~~~~~~ 105 (243)
.++.........++||+++|-.++||||++..|.+.++....+ |.........+.| ..+.+||.-|+ +....
T Consensus 5 til~~~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltp----T~GFn~k~v~~~g~f~LnvwDiGGq---r~IRp 77 (185)
T KOG0074|consen 5 TILCCCKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTP----TNGFNTKKVEYDGTFHLNVWDIGGQ---RGIRP 77 (185)
T ss_pred HHHHHhcCCCcceEEEEEEecCCCcchhHHHHHccCChhhccc----cCCcceEEEeecCcEEEEEEecCCc---cccch
Confidence 3444555555688999999999999999999999998543332 2233334455555 79999998887 33333
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEeCCCcccCh-hHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDN-LDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 106 ~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~-~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+..+|+ .+.|.++||++-....+.+ ......+.+.+. +-...|+.+-.||.|+.
T Consensus 78 ----yWsNYy--envd~lIyVIDS~D~krfeE~~~el~ELleee--Kl~~vpvlIfankQdll 132 (185)
T KOG0074|consen 78 ----YWSNYY--ENVDGLIYVIDSTDEKRFEEISEELVELLEEE--KLAEVPVLIFANKQDLL 132 (185)
T ss_pred ----hhhhhh--hccceEEEEEeCCchHhHHHHHHHHHHHhhhh--hhhccceeehhhhhHHH
Confidence 333343 3899999996642222222 222222222221 11236888888888875
No 285
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=3.6e-08 Score=72.65 Aligned_cols=116 Identities=19% Similarity=0.248 Sum_probs=73.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.++.+|+++|-+++||||++..+.-... +...| |........++.+..+.+||.-|+. .+....++|+
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~--~~~ip--TvGFnvetVtykN~kfNvwdvGGqd-------~iRplWrhYy- 82 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS--VTTIP--TVGFNVETVTYKNVKFNVWDVGGQD-------KIRPLWRHYY- 82 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC--ccccc--ccceeEEEEEeeeeEEeeeeccCch-------hhhHHHHhhc-
Confidence 4689999999999999999988775442 22222 3334455667888999999999984 2333455555
Q ss_pred cCCCcEEEEEEeC-CCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRL-DVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~-d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
++..++|+|++. +..++.+...+....+.+. +-...++++..||-|+.
T Consensus 83 -~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~--em~~~~~LvlANkQDlp 131 (180)
T KOG0071|consen 83 -TGTQGLIFVVDSADRDRIEEARNELHRIINDR--EMRDAIILILANKQDLP 131 (180)
T ss_pred -cCCceEEEEEeccchhhHHHHHHHHHHHhCCH--hhhcceEEEEecCcccc
Confidence 588899999543 3222222222222222211 11124788899999985
No 286
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.86 E-value=1.4e-08 Score=88.66 Aligned_cols=89 Identities=22% Similarity=0.272 Sum_probs=55.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC-----cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH-HHHHH
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK-----AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA-IQLIK 112 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~-----~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~-~~~~~ 112 (243)
..+++++|.+|+|||||+|+|++.. ...++..|++|....... . +..+.++||||+.........+ .+.++
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~--~-~~~~~l~DtPG~~~~~~~~~~l~~~~l~ 230 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIP--L-DDGHSLYDTPGIINSHQMAHYLDKKDLK 230 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEE--e-CCCCEEEECCCCCChhHhhhhcCHHHHh
Confidence 3699999999999999999999853 245666777666544332 2 2346799999997653222111 11222
Q ss_pred HHHhcCCCcEEEEEEeCC
Q 026113 113 RFLLNKTIDVLLYVDRLD 130 (243)
Q Consensus 113 ~~~~~~~~~~il~v~~~d 130 (243)
..........+.+..+..
T Consensus 231 ~~~~~~~i~~~~~~l~~~ 248 (360)
T TIGR03597 231 YITPKKEIKPKTYQLNPN 248 (360)
T ss_pred hcCCCCccCceEEEeCCC
Confidence 222334566677774443
No 287
>PRK12740 elongation factor G; Reviewed
Probab=98.84 E-value=5.8e-08 Score=91.40 Aligned_cols=108 Identities=15% Similarity=0.181 Sum_probs=66.3
Q ss_pred EcCCCCcHHHHHHHHhCCCccccc-----------C------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 026113 45 MGKGGVGKSSTVNSIIGEKAVTVS-----------T------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 107 (243)
Q Consensus 45 vG~~g~GKSSlin~llg~~~~~~~-----------~------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~ 107 (243)
+|..++|||||+++|+...-.... + ....|.........+.+..+.+|||||..+. ..++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~---~~~~ 77 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDF---TGEV 77 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHH---HHHH
Confidence 589999999999999644321100 0 0112223333456678899999999998531 1222
Q ss_pred HHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 108 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 108 ~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
...+ ..+|++++|++... .........+..+... ..|+++|+||+|..
T Consensus 78 ~~~l------~~aD~vllvvd~~~-~~~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~ 125 (668)
T PRK12740 78 ERAL------RVLDGAVVVVCAVG-GVEPQTETVWRQAEKY-----GVPRIIFVNKMDRA 125 (668)
T ss_pred HHHH------HHhCeEEEEEeCCC-CcCHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 2222 37899999977653 2333333333333321 36999999999975
No 288
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.84 E-value=7.5e-08 Score=92.54 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=68.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC---------------CCCCCeeEEEEeee----------------C
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF---------------QSEGPRPVMVSRSR----------------A 85 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~---------------~~~t~~~~~~~~~~----------------~ 85 (243)
.+-.+|+++|..++|||||+++|+...-...... ...|.........+ .
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 3567999999999999999999985432110000 01111111112222 2
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (243)
Q Consensus 86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 165 (243)
+..+.++||||..| ....+...+ ..+|+.|+|++... .........++..... ..|+++++||+|
T Consensus 97 ~~~inliDtPGh~d-------F~~e~~~al--~~~D~ailVvda~~-Gv~~~t~~~~~~~~~~-----~~p~i~~iNK~D 161 (843)
T PLN00116 97 EYLINLIDSPGHVD-------FSSEVTAAL--RITDGALVVVDCIE-GVCVQTETVLRQALGE-----RIRPVLTVNKMD 161 (843)
T ss_pred ceEEEEECCCCHHH-------HHHHHHHHH--hhcCEEEEEEECCC-CCcccHHHHHHHHHHC-----CCCEEEEEECCc
Confidence 56789999999943 222222222 47899999977643 2333333333333222 269999999999
Q ss_pred CC
Q 026113 166 LS 167 (243)
Q Consensus 166 ~~ 167 (243)
..
T Consensus 162 ~~ 163 (843)
T PLN00116 162 RC 163 (843)
T ss_pred cc
Confidence 75
No 289
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.83 E-value=1.6e-08 Score=73.09 Aligned_cols=101 Identities=21% Similarity=0.247 Sum_probs=61.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 120 (243)
||+++|..|+|||||.+++-|...-. ..|+ ..++.+. -.|||||-+- ..+.+...+.. ....+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly-----kKTQ-----Ave~~d~--~~IDTPGEy~---~~~~~Y~aL~t--t~~da 65 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY-----KKTQ-----AVEFNDK--GDIDTPGEYF---EHPRWYHALIT--TLQDA 65 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh-----cccc-----eeeccCc--cccCCchhhh---hhhHHHHHHHH--Hhhcc
Confidence 79999999999999999999987421 1111 1222221 1499999631 12222222221 22589
Q ss_pred cEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 121 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+++++|..++... . .+...|-.-..+++|-|+||+|+.
T Consensus 66 dvi~~v~~and~~-----s----~f~p~f~~~~~k~vIgvVTK~DLa 103 (148)
T COG4917 66 DVIIYVHAANDPE-----S----RFPPGFLDIGVKKVIGVVTKADLA 103 (148)
T ss_pred ceeeeeecccCcc-----c----cCCcccccccccceEEEEeccccc
Confidence 9999998775421 0 111222222236799999999996
No 290
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.83 E-value=3.6e-09 Score=81.22 Aligned_cols=61 Identities=26% Similarity=0.353 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCC-------CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~ 103 (243)
-.++++|.+|||||||+|+|++.....+... ..+|.....+.. .....||||||+.+....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l---~~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL---PDGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE---TTSEEEECSHHHHT--GC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec---CCCcEEEECCCCCccccc
Confidence 5889999999999999999999854333222 122222222222 224679999999766543
No 291
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=2.2e-08 Score=86.30 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=71.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcc-c-----------------------cc------CCCCCCCeeEEEEeeeCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAV-T-----------------------VS------TFQSEGPRPVMVSRSRAG 86 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~-~-----------------------~~------~~~~~t~~~~~~~~~~~~ 86 (243)
+..++++++|...+|||||+-.|+-.--. . +- ...+.|.+......+.+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 46799999999999999999888732100 0 00 001112222223344556
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCccc-----ChhHHHHHHHHHHHhcccccccEEEEE
Q 026113 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV-----DNLDKQITRAITDNFGEQIWKRALIVL 161 (243)
Q Consensus 87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~-----~~~~~~~l~~l~~~~~~~~~~~~ivV~ 161 (243)
..+.|+|+||.-| ....+-. ....+|+-++|++.....+ ...+.+-.-.+....|. .++|+++
T Consensus 85 ~~~tIiDaPGHrd-------FvknmIt--GasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi---~~lIVav 152 (428)
T COG5256 85 YNFTIIDAPGHRD-------FVKNMIT--GASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGI---KQLIVAV 152 (428)
T ss_pred ceEEEeeCCchHH-------HHHHhhc--chhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCC---ceEEEEE
Confidence 6899999999621 1111211 1247899999977643311 12233333355666664 6899999
Q ss_pred eCCCCCC
Q 026113 162 THAQLSL 168 (243)
Q Consensus 162 tk~D~~~ 168 (243)
||+|+.+
T Consensus 153 NKMD~v~ 159 (428)
T COG5256 153 NKMDLVS 159 (428)
T ss_pred Ecccccc
Confidence 9999864
No 292
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.82 E-value=4.7e-09 Score=80.39 Aligned_cols=122 Identities=14% Similarity=0.099 Sum_probs=76.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++++++|..++||||+|.+++..- +......+...+....+..+ .+..+.+|||+|+.+.+. ..+.|.
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgi-fTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDa-------ItkAyy 90 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDA-------ITKAYY 90 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccc-cccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHH-------HHHHHh
Confidence 45899999999999999999998543 22222222222222222222 334677999999953321 112222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 172 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~ 172 (243)
+++.+.++|++-...-..+.-..|.+.+....+. .|+++|-||+|+.+....
T Consensus 91 --rgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~---IPtV~vqNKIDlveds~~ 142 (246)
T KOG4252|consen 91 --RGAQASVLVFSTTDRYSFEATLEWYNKVQKETER---IPTVFVQNKIDLVEDSQM 142 (246)
T ss_pred --ccccceEEEEecccHHHHHHHHHHHHHHHHHhcc---CCeEEeeccchhhHhhhc
Confidence 4888888887764322334556666667666654 799999999999754433
No 293
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.82 E-value=9.2e-08 Score=90.77 Aligned_cols=115 Identities=13% Similarity=0.204 Sum_probs=67.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccccc---------CC------CCCCCeeEEEEeee----CCeEEEEEeCCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVS---------TF------QSEGPRPVMVSRSR----AGFTLNIVDTPGLI 98 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~---------~~------~~~t~~~~~~~~~~----~~~~~~viDTPG~~ 98 (243)
+-.+|+++|..++|||||+.+|+...-.... +. ...|.........+ .+..+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 4568999999999999999999854211100 00 00111111111222 35679999999997
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+. ..+....+ ..+|++++|++... .........+....+. + .|.|+++||+|..
T Consensus 99 df---~~~~~~~l------~~~D~avlVvda~~-g~~~~t~~~~~~~~~~-~----~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DF---GGDVTRAM------RAVDGAIVVVDAVE-GVMPQTETVLRQALRE-R----VKPVLFINKVDRL 152 (731)
T ss_pred Ch---HHHHHHHH------HhcCEEEEEEECCC-CCCccHHHHHHHHHHc-C----CCeEEEEECchhh
Confidence 63 22333333 37899999976543 2333334444332221 2 4779999999975
No 294
>PRK12289 GTPase RsgA; Reviewed
Probab=98.81 E-value=9.9e-09 Score=88.85 Aligned_cols=59 Identities=27% Similarity=0.399 Sum_probs=40.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~viDTPG~~~~~~ 102 (243)
.++++|.+|+|||||+|+|++.....++..+. +|.....+... .| ..|+||||+.....
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~-~g--~~liDTPG~~~~~l 239 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELP-NG--GLLADTPGFNQPDL 239 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECC-CC--cEEEeCCCcccccc
Confidence 48999999999999999999876555544443 34443333222 22 37999999976554
No 295
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=3.7e-08 Score=74.64 Aligned_cols=116 Identities=17% Similarity=0.231 Sum_probs=79.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
+++-|++++|-.|+|||||++.+-..+.....+ |.+++.......+..++.+|.-|.. .+.+..++|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvP----TlHPTSE~l~Ig~m~ftt~DLGGH~-------qArr~wkdyf- 85 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVP----TLHPTSEELSIGGMTFTTFDLGGHL-------QARRVWKDYF- 85 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCC----CcCCChHHheecCceEEEEccccHH-------HHHHHHHHHH-
Confidence 367899999999999999999988776543222 4445555677889999999988873 4455556666
Q ss_pred cCCCcEEEEEEeC-CCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRL-DVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~-d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+.+|++++.+++ |..++.+ .+.-++.+...- .-.+.|+++++||+|..
T Consensus 86 -~~v~~iv~lvda~d~er~~e-s~~eld~ll~~e-~la~vp~lilgnKId~p 134 (193)
T KOG0077|consen 86 -PQVDAIVYLVDAYDQERFAE-SKKELDALLSDE-SLATVPFLILGNKIDIP 134 (193)
T ss_pred -hhhceeEeeeehhhHHHhHH-HHHHHHHHHhHH-HHhcCcceeecccccCC
Confidence 588999998665 4333433 333333332221 12457999999999974
No 296
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.80 E-value=3.4e-08 Score=82.60 Aligned_cols=127 Identities=16% Similarity=0.185 Sum_probs=80.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEe-eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR-SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
.+..-|.+||.||+|||||+++|++..+.+.... ..|-+++.... -..|..+.+.||-||.. ...-.....++..+
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drL-FATLDpT~h~a~Lpsg~~vlltDTvGFis--dLP~~LvaAF~ATL 252 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRL-FATLDPTLHSAHLPSGNFVLLTDTVGFIS--DLPIQLVAAFQATL 252 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchh-heeccchhhhccCCCCcEEEEeechhhhh--hCcHHHHHHHHHHH
Confidence 3557899999999999999999997765443332 23444444333 24678899999999963 33334444444333
Q ss_pred hc-CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc---cccccEEEEEeCCCCC
Q 026113 116 LN-KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE---QIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~-~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~---~~~~~~ivV~tk~D~~ 167 (243)
.+ ..+|++|.|.++............+..+.+. |- .....+|=|-||.|..
T Consensus 253 eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 253 EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccc
Confidence 21 4899999997765433333334445555443 31 2235688899999874
No 297
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.79 E-value=6.3e-08 Score=79.46 Aligned_cols=122 Identities=21% Similarity=0.288 Sum_probs=75.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC---cHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV---NYHAIQLIKRF 114 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~---~~~~~~~~~~~ 114 (243)
++.+++++|.+|+|||||+|.++......-...+ .+..++....-.-|..+.++|.||++..... ..++-.....|
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~-K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKS-KNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCC-CCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence 4589999999999999999999977532211111 1222223333345778999999997654332 23444555556
Q ss_pred HhcC--CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 115 LLNK--TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 115 ~~~~--~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+.++ -..++|++. .+ ..+...|...+.++.+. ..|..+|+||||..
T Consensus 214 ~leR~nLv~~FLLvd-~s-v~i~~~D~~~i~~~ge~-----~VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 214 LLERENLVRVFLLVD-AS-VPIQPTDNPEIAWLGEN-----NVPMTSVFTKCDKQ 261 (320)
T ss_pred HHhhhhhheeeeeee-cc-CCCCCCChHHHHHHhhc-----CCCeEEeeehhhhh
Confidence 5432 344555552 11 12455566666555543 27999999999964
No 298
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.78 E-value=1.4e-07 Score=83.40 Aligned_cols=119 Identities=20% Similarity=0.265 Sum_probs=72.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh------CCCcccccCCCC-----------CC-Ce-eEEEEe-e--------------
Q 026113 38 NTLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQS-----------EG-PR-PVMVSR-S-------------- 83 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~ll------g~~~~~~~~~~~-----------~t-~~-~~~~~~-~-------------- 83 (243)
.+..|+++|.+|+||||++..|. |.++..+..-+. .. .. +..... .
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 46789999999999999998886 544332221100 00 00 101000 0
Q ss_pred -eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEe
Q 026113 84 -RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162 (243)
Q Consensus 84 -~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~t 162 (243)
..+..+.||||||.. ..+....+++.+......|+.+++| +|.. ..+......+.+.+.. .+.-+|+|
T Consensus 179 ~~~~~DvViIDTaGr~---~~d~~lm~El~~i~~~~~p~e~lLV--lda~-~Gq~a~~~a~~F~~~~-----~~~g~IlT 247 (429)
T TIGR01425 179 KKENFDIIIVDTSGRH---KQEDSLFEEMLQVAEAIQPDNIIFV--MDGS-IGQAAEAQAKAFKDSV-----DVGSVIIT 247 (429)
T ss_pred HhCCCCEEEEECCCCC---cchHHHHHHHHHHhhhcCCcEEEEE--eccc-cChhHHHHHHHHHhcc-----CCcEEEEE
Confidence 025689999999973 3445566677766555678999999 4432 2333444455554432 47889999
Q ss_pred CCCCC
Q 026113 163 HAQLS 167 (243)
Q Consensus 163 k~D~~ 167 (243)
|.|..
T Consensus 248 KlD~~ 252 (429)
T TIGR01425 248 KLDGH 252 (429)
T ss_pred CccCC
Confidence 99874
No 299
>PRK12288 GTPase RsgA; Reviewed
Probab=98.77 E-value=2.3e-08 Score=86.51 Aligned_cols=59 Identities=27% Similarity=0.487 Sum_probs=39.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~viDTPG~~~~~~ 102 (243)
.++++|.+|+|||||+|+|++.....++..+. +|.....+.... | ..|+||||+-+...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-~--~~liDTPGir~~~l 272 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-G--GDLIDSPGVREFGL 272 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-C--CEEEECCCCCcccC
Confidence 47899999999999999999987555544432 222222222211 2 35999999976654
No 300
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.77 E-value=3.1e-07 Score=78.88 Aligned_cols=35 Identities=37% Similarity=0.451 Sum_probs=27.9
Q ss_pred HHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHh
Q 026113 26 LELLGKLKQENVNTLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 26 ~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~ll 60 (243)
..+++.+.+....++.|.+.|.+|+|||||++.+.
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~ 77 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALG 77 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHH
Confidence 44556665545578999999999999999998865
No 301
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.76 E-value=2.2e-08 Score=82.83 Aligned_cols=59 Identities=29% Similarity=0.340 Sum_probs=40.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCC-------CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~ 102 (243)
..++++|.+|+|||||+|+|++.....++.. ..+|.....+.. .+ -.++||||+.....
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~~l 186 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEFGL 186 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCccccCC
Confidence 4789999999999999999998754333322 224444433333 22 37999999976543
No 302
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=7.5e-08 Score=82.41 Aligned_cols=84 Identities=21% Similarity=0.309 Sum_probs=65.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee------------------CCeEEEEEeCCCCCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------------------AGFTLNIVDTPGLIEG 100 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~------------------~~~~~~viDTPG~~~~ 100 (243)
.+++.+||.+|+|||||.|+++... +....+|.+|.++......+ -..++.++|.+|+-.+
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 4789999999999999999999888 57788999988876543321 1125899999998754
Q ss_pred C----CCcHHHHHHHHHHHhcCCCcEEEEEEeC
Q 026113 101 G----YVNYHAIQLIKRFLLNKTIDVLLYVDRL 129 (243)
Q Consensus 101 ~----~~~~~~~~~~~~~~~~~~~~~il~v~~~ 129 (243)
. ....+.+..+| .+|+|+.|++.
T Consensus 81 As~GeGLGNkFL~~IR------evdaI~hVVr~ 107 (372)
T COG0012 81 ASKGEGLGNKFLDNIR------EVDAIIHVVRC 107 (372)
T ss_pred cccCCCcchHHHHhhh------hcCeEEEEEEe
Confidence 3 34557788886 89999999754
No 303
>PRK13768 GTPase; Provisional
Probab=98.70 E-value=9.8e-08 Score=79.33 Aligned_cols=81 Identities=16% Similarity=0.041 Sum_probs=44.6
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (243)
Q Consensus 87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 166 (243)
..+.+|||||..+....... ...+.+.+....+++++++++... ..+..+.....++....-.....|+++|+||+|+
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~-~~~~~~~l~~~~~~~ii~liD~~~-~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRES-GRKLVERLSGSSKSVVVFLIDAVL-AKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL 174 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHH-HHHHHHHHHhcCCeEEEEEechHH-hCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence 36999999998654322222 222333332223899999955432 1233343333333211111234799999999998
Q ss_pred CCC
Q 026113 167 SLP 169 (243)
Q Consensus 167 ~~~ 169 (243)
...
T Consensus 175 ~~~ 177 (253)
T PRK13768 175 LSE 177 (253)
T ss_pred cCc
Confidence 643
No 304
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.70 E-value=1.5e-07 Score=93.37 Aligned_cols=123 Identities=18% Similarity=0.171 Sum_probs=71.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCcccccC---CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC----CcH-H---HHHH
Q 026113 42 ILVMGKGGVGKSSTVNSIIGEKAVTVST---FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY----VNY-H---AIQL 110 (243)
Q Consensus 42 IllvG~~g~GKSSlin~llg~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~----~~~-~---~~~~ 110 (243)
.+++|.+|+||||+++.. |........ ....+.........|-.....++||+|.+-... .+. . .+..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~ 192 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGL 192 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHHH
Confidence 588999999999999874 554321111 000011111111223344567999999653332 121 2 2333
Q ss_pred HHHHHhcCCCcEEEEEEeCCCcc-cCh--------hHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 111 IKRFLLNKTIDVLLYVDRLDVYR-VDN--------LDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 111 ~~~~~~~~~~~~il~v~~~d~~~-~~~--------~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
++++.....+|+||++++++..- .++ ..+..+..+.+.+|-. .|+.+|+||+|+.
T Consensus 193 L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 193 LRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--FPVYLVLTKADLL 256 (1169)
T ss_pred HHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEEecchhh
Confidence 44444456899999998765321 111 2244466677777765 5999999999986
No 305
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.69 E-value=3.4e-08 Score=79.90 Aligned_cols=103 Identities=21% Similarity=0.354 Sum_probs=75.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc----HHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN----YHAIQLIKR 113 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~----~~~~~~~~~ 113 (243)
...|++++|-+.+|||||+..|+.... ....+..+|.+|......++|-+++++|.||+.++.... +++...
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~S-eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviav--- 136 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHS-EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAV--- 136 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchh-hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEE---
Confidence 346999999999999999999998763 344556677778888889999999999999987654332 222222
Q ss_pred HHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc
Q 026113 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG 150 (243)
Q Consensus 114 ~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~ 150 (243)
...+|+||+| +|.. -.+..+..++.-.+..|
T Consensus 137 ---ArtaDlilMv--LDat-k~e~qr~~le~ELe~vG 167 (364)
T KOG1486|consen 137 ---ARTADLILMV--LDAT-KSEDQREILEKELEAVG 167 (364)
T ss_pred ---eecccEEEEE--ecCC-cchhHHHHHHHHHHHhc
Confidence 2589999999 5542 33556666666555555
No 306
>PRK13796 GTPase YqeH; Provisional
Probab=98.69 E-value=4.6e-08 Score=85.50 Aligned_cols=59 Identities=31% Similarity=0.401 Sum_probs=42.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC-----cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK-----AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~-----~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~ 100 (243)
..++.++|.+|+|||||+|+|++.. ...++..|++|........ + ....++||||+...
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l--~-~~~~l~DTPGi~~~ 223 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL--D-DGSFLYDTPGIIHR 223 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc--C-CCcEEEECCCcccc
Confidence 4689999999999999999999642 3346677777766544332 2 22579999999643
No 307
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.67 E-value=1.4e-07 Score=79.79 Aligned_cols=128 Identities=15% Similarity=0.101 Sum_probs=79.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccccc-------C-------------------------CCCCCCeeEEEEeee
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS-------T-------------------------FQSEGPRPVMVSRSR 84 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~-------~-------------------------~~~~t~~~~~~~~~~ 84 (243)
+..+|.+-.|..--||||||-.|+......-. . ..+.|.+..+.....
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 46799999999999999999999965321100 0 011122222223334
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (243)
Q Consensus 85 ~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 164 (243)
..+++.|.||||.. ++.+.|..- ...+|+.++++ |...--.++.+-...+..++|- +++++.+||+
T Consensus 84 ~KRkFIiADTPGHe-------QYTRNMaTG--ASTadlAIlLV--DAR~Gvl~QTrRHs~I~sLLGI---rhvvvAVNKm 149 (431)
T COG2895 84 EKRKFIIADTPGHE-------QYTRNMATG--ASTADLAILLV--DARKGVLEQTRRHSFIASLLGI---RHVVVAVNKM 149 (431)
T ss_pred ccceEEEecCCcHH-------HHhhhhhcc--cccccEEEEEE--ecchhhHHHhHHHHHHHHHhCC---cEEEEEEeee
Confidence 67899999999983 322233311 23678888884 4423223344445567777775 7999999999
Q ss_pred CCCCCCCCCHHHHH
Q 026113 165 QLSLPDRLDYEVFC 178 (243)
Q Consensus 165 D~~~~~~~~~~~~~ 178 (243)
||.+-++..+++..
T Consensus 150 DLvdy~e~~F~~I~ 163 (431)
T COG2895 150 DLVDYSEEVFEAIV 163 (431)
T ss_pred cccccCHHHHHHHH
Confidence 99755544444443
No 308
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.64 E-value=3.8e-07 Score=81.78 Aligned_cols=118 Identities=19% Similarity=0.170 Sum_probs=68.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccC--CCCCCCe----------------eEEE-Ee---------------
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST--FQSEGPR----------------PVMV-SR--------------- 82 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~--~~~~t~~----------------~~~~-~~--------------- 82 (243)
...++|.++|.-..|||||+.+|+|........ ..+.|.+ +..+ ..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 367999999999999999999999864321100 0000000 0000 00
Q ss_pred -eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEE
Q 026113 83 -SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 161 (243)
Q Consensus 83 -~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~ 161 (243)
......+.++||||.. .+.+.+...+ ..+|++++|++++.........+.+ .+...++. +++|+|+
T Consensus 112 ~~~~~~~i~~IDtPGH~-------~fi~~m~~g~--~~~D~alLVVda~~g~~~~qT~ehl-~i~~~lgi---~~iIVvl 178 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHD-------ILMATMLNGA--AVMDAALLLIAANESCPQPQTSEHL-AAVEIMKL---KHIIILQ 178 (460)
T ss_pred cccccceEeeeeCCCHH-------HHHHHHHHHH--hhCCEEEEEEECCCCccchhhHHHH-HHHHHcCC---CcEEEEE
Confidence 0112478999999962 3333333222 4889999997776421122122223 23334443 5899999
Q ss_pred eCCCCC
Q 026113 162 THAQLS 167 (243)
Q Consensus 162 tk~D~~ 167 (243)
||+|+.
T Consensus 179 NKiDlv 184 (460)
T PTZ00327 179 NKIDLV 184 (460)
T ss_pred eccccc
Confidence 999986
No 309
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.63 E-value=2.6e-07 Score=80.03 Aligned_cols=84 Identities=20% Similarity=0.204 Sum_probs=64.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCCCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGGY 102 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~viDTPG~~~~~~ 102 (243)
+++.++|.+++|||||.|+|++........+|.+|..+......+.+ ..+.++|.||+.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 78999999999999999999999854667778887777665554433 2589999999975432
Q ss_pred ----CcHHHHHHHHHHHhcCCCcEEEEEEeC
Q 026113 103 ----VNYHAIQLIKRFLLNKTIDVLLYVDRL 129 (243)
Q Consensus 103 ----~~~~~~~~~~~~~~~~~~~~il~v~~~ 129 (243)
.....+..++ .+|++++|++.
T Consensus 83 ~g~Glgn~fL~~ir------~~d~l~hVvr~ 107 (368)
T TIGR00092 83 KGEGLGNQFLANIR------EVDIIQHVVRC 107 (368)
T ss_pred cccCcchHHHHHHH------hCCEEEEEEeC
Confidence 3345666665 88999999775
No 310
>PTZ00099 rab6; Provisional
Probab=98.62 E-value=5.1e-07 Score=70.90 Aligned_cols=78 Identities=14% Similarity=0.108 Sum_probs=50.0
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (243)
Q Consensus 87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 166 (243)
..+.+|||||........ ..++ .++|++|+|++++.....+....|+..+....+. ..|+++|+||+|+
T Consensus 29 v~l~iwDt~G~e~~~~~~-------~~~~--~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~--~~piilVgNK~DL 97 (176)
T PTZ00099 29 VRLQLWDTAGQERFRSLI-------PSYI--RDSAAAIVVYDITNRQSFENTTKWIQDILNERGK--DVIIALVGNKTDL 97 (176)
T ss_pred EEEEEEECCChHHhhhcc-------HHHh--CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECccc
Confidence 578999999995432211 1222 5999999998886533223334666666554433 3689999999998
Q ss_pred CCCCCCCHH
Q 026113 167 SLPDRLDYE 175 (243)
Q Consensus 167 ~~~~~~~~~ 175 (243)
......+.+
T Consensus 98 ~~~~~v~~~ 106 (176)
T PTZ00099 98 GDLRKVTYE 106 (176)
T ss_pred ccccCCCHH
Confidence 643334433
No 311
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.61 E-value=2.3e-07 Score=80.72 Aligned_cols=119 Identities=17% Similarity=0.147 Sum_probs=68.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC------CcccccC--CC--CC--------CCeeEEEEe-e-------------eC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE------KAVTVST--FQ--SE--------GPRPVMVSR-S-------------RA 85 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~------~~~~~~~--~~--~~--------t~~~~~~~~-~-------------~~ 85 (243)
++..|+++|.+|+||||++..|... .+..... +. +. ......... . ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 4578999999999999999888632 1111110 00 00 000000000 0 01
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (243)
Q Consensus 86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 165 (243)
+..+.||||||.. ..+....+.+.+.+....+|.+++|++.. .-......+++.+.. + ..-=+|+||.|
T Consensus 320 ~~DvVLIDTaGRs---~kd~~lm~EL~~~lk~~~PdevlLVLsAT--tk~~d~~~i~~~F~~-~-----~idglI~TKLD 388 (436)
T PRK11889 320 RVDYILIDTAGKN---YRASETVEEMIETMGQVEPDYICLTLSAS--MKSKDMIEIITNFKD-I-----HIDGIVFTKFD 388 (436)
T ss_pred CCCEEEEeCcccc---CcCHHHHHHHHHHHhhcCCCeEEEEECCc--cChHHHHHHHHHhcC-C-----CCCEEEEEccc
Confidence 3579999999984 23445566666666556788888884442 222333444444443 1 46788999999
Q ss_pred CC
Q 026113 166 LS 167 (243)
Q Consensus 166 ~~ 167 (243)
..
T Consensus 389 ET 390 (436)
T PRK11889 389 ET 390 (436)
T ss_pred CC
Confidence 75
No 312
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.60 E-value=5.4e-08 Score=77.70 Aligned_cols=71 Identities=21% Similarity=0.260 Sum_probs=45.3
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (243)
Q Consensus 86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 165 (243)
+..+.+|||||.. ..+.+..++++++.....++-+++|.+... ...+...+..+.+.++ ..-+|+||.|
T Consensus 83 ~~D~vlIDT~Gr~---~~d~~~~~el~~~~~~~~~~~~~LVlsa~~---~~~~~~~~~~~~~~~~-----~~~lIlTKlD 151 (196)
T PF00448_consen 83 GYDLVLIDTAGRS---PRDEELLEELKKLLEALNPDEVHLVLSATM---GQEDLEQALAFYEAFG-----IDGLILTKLD 151 (196)
T ss_dssp TSSEEEEEE-SSS---STHHHHHHHHHHHHHHHSSSEEEEEEEGGG---GGHHHHHHHHHHHHSS-----TCEEEEESTT
T ss_pred CCCEEEEecCCcc---hhhHHHHHHHHHHhhhcCCccceEEEeccc---ChHHHHHHHHHhhccc-----CceEEEEeec
Confidence 4579999999984 345556667776654447888888855542 2344444444444443 4567899999
Q ss_pred CC
Q 026113 166 LS 167 (243)
Q Consensus 166 ~~ 167 (243)
..
T Consensus 152 et 153 (196)
T PF00448_consen 152 ET 153 (196)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 313
>PRK00098 GTPase RsgA; Reviewed
Probab=98.60 E-value=1.7e-07 Score=79.69 Aligned_cols=58 Identities=21% Similarity=0.340 Sum_probs=38.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~viDTPG~~~~ 100 (243)
..++++|.+|+|||||+|+|++.....++..+. +|....... ..+ ...++||||+...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~--~~~-~~~~~DtpG~~~~ 229 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYD--LPG-GGLLIDTPGFSSF 229 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEE--cCC-CcEEEECCCcCcc
Confidence 478999999999999999999886544333321 232222222 221 2479999999753
No 314
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.60 E-value=9.4e-08 Score=80.00 Aligned_cols=59 Identities=24% Similarity=0.394 Sum_probs=38.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCC-------CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~ 102 (243)
..+++|.+|+|||||+|+|.+.....++.. ..+|.....+..... =.|+||||+.+...
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~~l 231 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSLGL 231 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCccCc
Confidence 778899999999999999998643333221 222332222222222 35899999976654
No 315
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=5.9e-07 Score=76.55 Aligned_cols=118 Identities=17% Similarity=0.297 Sum_probs=68.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccc--ccCCCCCCCeeEEEEe-----------------eeCC--------------
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVT--VSTFQSEGPRPVMVSR-----------------SRAG-------------- 86 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~--~~~~~~~t~~~~~~~~-----------------~~~~-------------- 86 (243)
.=|+++|.-+.||||+|+.|+..+... .++.|++..-.....+ .+.+
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 468999999999999999999887431 1222221111111000 0000
Q ss_pred --------eEEEEEeCCCCCCCCCCcH-------HHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc
Q 026113 87 --------FTLNIVDTPGLIEGGYVNY-------HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE 151 (243)
Q Consensus 87 --------~~~~viDTPG~~~~~~~~~-------~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~ 151 (243)
.++.+|||||+.+.....- .+.+.+. ..+|.|+++++..-...+++-.+.+..++ |.
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFa-----eR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~ 210 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFA-----ERVDRIILLFDAHKLDISDEFKRVIDALK---GH 210 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHH-----HhccEEEEEechhhccccHHHHHHHHHhh---CC
Confidence 1389999999987654321 1222222 48999999955432224444444444443 43
Q ss_pred cccccEEEEEeCCCCC
Q 026113 152 QIWKRALIVLTHAQLS 167 (243)
Q Consensus 152 ~~~~~~ivV~tk~D~~ 167 (243)
+ ..+=||+||+|..
T Consensus 211 E--dkiRVVLNKADqV 224 (532)
T KOG1954|consen 211 E--DKIRVVLNKADQV 224 (532)
T ss_pred c--ceeEEEecccccc
Confidence 3 4688899999864
No 316
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.57 E-value=2.3e-07 Score=78.54 Aligned_cols=59 Identities=24% Similarity=0.403 Sum_probs=38.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCC-------CCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~~viDTPG~~~~~ 101 (243)
-.++++|.+|+|||||+|.|+|.....++..+ .+|.......... ...++||||+.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG---GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC---CCEEEECCCCCccC
Confidence 57999999999999999999998654333221 1232222222211 23699999996543
No 317
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=1.6e-06 Score=77.28 Aligned_cols=114 Identities=12% Similarity=0.068 Sum_probs=80.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
++.-+.++|.---|||||+..|-+.+++... ..+.|++...+....+ ...+.++||||. +.+..||.-
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~E-aGGITQhIGA~~v~~~~~~~~~itFiDTPGH--------eAFt~mRaR 74 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGE-AGGITQHIGAYQVPLDVIKIPGITFIDTPGH--------EAFTAMRAR 74 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcccccc-CCceeeEeeeEEEEeccCCCceEEEEcCCcH--------HHHHHHHhc
Confidence 5677899999999999999999999875433 3345666666666664 468999999999 555555531
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
-..-+|.++||+.+|.- +.......+.+.+.. ..|+++..||+|..
T Consensus 75 -Ga~vtDIaILVVa~dDG-v~pQTiEAI~hak~a-----~vP~iVAiNKiDk~ 120 (509)
T COG0532 75 -GASVTDIAILVVAADDG-VMPQTIEAINHAKAA-----GVPIVVAINKIDKP 120 (509)
T ss_pred -CCccccEEEEEEEccCC-cchhHHHHHHHHHHC-----CCCEEEEEecccCC
Confidence 11246899999888753 333344444444432 37999999999986
No 318
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.55 E-value=1.1e-07 Score=84.02 Aligned_cols=62 Identities=29% Similarity=0.428 Sum_probs=51.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~ 103 (243)
.+.|.+||.+|+||||+||+|.|.+...++..|+.|.+.++... ...+.++|+||+-=+...
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l---s~~v~LCDCPGLVfPSf~ 375 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL---SPSVCLCDCPGLVFPSFS 375 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc---CCCceecCCCCccccCCC
Confidence 48999999999999999999999998888999998887766543 345889999998655443
No 319
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.54 E-value=6.4e-08 Score=79.61 Aligned_cols=78 Identities=18% Similarity=0.072 Sum_probs=33.0
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc-ccccccEEEEEeCCCC
Q 026113 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG-EQIWKRALIVLTHAQL 166 (243)
Q Consensus 88 ~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~-~~~~~~~ivV~tk~D~ 166 (243)
.+.++||||+.+.-...+ ....+.+.+.....-+++++ +|.....+...-.-..+..... -+...|.|.|+||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~-~~~~i~~~L~~~~~~~~v~L--vD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSD-SGRKIVERLQKNGRLVVVFL--VDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSH-HHHHHHHTSSS----EEEEE--E-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEech-hHHHHHHHHhhhcceEEEEE--EecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCc
Confidence 699999999954322221 22223333332344556666 5554444422222211111111 1223699999999999
Q ss_pred CC
Q 026113 167 SL 168 (243)
Q Consensus 167 ~~ 168 (243)
.+
T Consensus 169 ~~ 170 (238)
T PF03029_consen 169 LS 170 (238)
T ss_dssp S-
T ss_pred cc
Confidence 74
No 320
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.53 E-value=7.3e-07 Score=73.23 Aligned_cols=75 Identities=21% Similarity=0.258 Sum_probs=42.2
Q ss_pred eEEEEEeCCCCCCCC---CCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc--ccccccEEEEE
Q 026113 87 FTLNIVDTPGLIEGG---YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG--EQIWKRALIVL 161 (243)
Q Consensus 87 ~~~~viDTPG~~~~~---~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivV~ 161 (243)
.+..+|||||+.+.- .+.. .+...+....|-+|+|| +|..+.+... .++..+.-.+. -....|+|+|+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGs----IIte~lass~ptvv~Yv--vDt~rs~~p~-tFMSNMlYAcSilyktklp~ivvf 188 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGS----IITETLASSFPTVVVYV--VDTPRSTSPT-TFMSNMLYACSILYKTKLPFIVVF 188 (366)
T ss_pred cCEEEEcCCCceEEEEecCCcc----chHhhHhhcCCeEEEEE--ecCCcCCCch-hHHHHHHHHHHHHHhccCCeEEEE
Confidence 358899999986421 1111 22233333578999999 5443433322 22222222221 12347999999
Q ss_pred eCCCCCC
Q 026113 162 THAQLSL 168 (243)
Q Consensus 162 tk~D~~~ 168 (243)
||+|+.+
T Consensus 189 NK~Dv~d 195 (366)
T KOG1532|consen 189 NKTDVSD 195 (366)
T ss_pred ecccccc
Confidence 9999863
No 321
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=2.5e-06 Score=76.07 Aligned_cols=115 Identities=15% Similarity=0.157 Sum_probs=78.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
.+|.-|-++|...-|||||+.+|-+..++.... .+.|++...+... ..|..+++.||||. ..+..||.-
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~-GGITQhIGAF~V~~p~G~~iTFLDTPGH--------aAF~aMRaR- 220 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEA-GGITQHIGAFTVTLPSGKSITFLDTPGH--------AAFSAMRAR- 220 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhc-CCccceeceEEEecCCCCEEEEecCCcH--------HHHHHHHhc-
Confidence 467788899999999999999999988754332 3345543333322 27899999999998 556666531
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
-....|.+++|+..|.. .. .++++.++..- +...|+|+.+||+|..
T Consensus 221 GA~vtDIvVLVVAadDG-Vm---pQT~EaIkhAk--~A~VpiVvAinKiDkp 266 (683)
T KOG1145|consen 221 GANVTDIVVLVVAADDG-VM---PQTLEAIKHAK--SANVPIVVAINKIDKP 266 (683)
T ss_pred cCccccEEEEEEEccCC-cc---HhHHHHHHHHH--hcCCCEEEEEeccCCC
Confidence 12356899999877752 22 33445554432 3347999999999964
No 322
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.52 E-value=3.8e-07 Score=73.02 Aligned_cols=118 Identities=20% Similarity=0.242 Sum_probs=72.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh-
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL- 116 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~viDTPG~~~~~~~~~~~~~~~~~~~~- 116 (243)
.-||+++|++|+||||+-..++....+.....++.|.+.......+.| .-+.+||.-|+.. .|..++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~----------fmen~~~~ 73 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEE----------FMENYLSS 73 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHH----------HHHHHHhh
Confidence 458999999999999998887766544433444445444443444444 5788999999831 2222221
Q ss_pred -----cCCCcEEEEEEeCCCcccChhH---HHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 117 -----NKTIDVLLYVDRLDVYRVDNLD---KQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 117 -----~~~~~~il~v~~~d~~~~~~~~---~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
-...+++++|++++...+...- .+.|+.+.+.- ..-.+.+.++|.|+...
T Consensus 74 q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S---P~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 74 QEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS---PEAKIFCLLHKMDLVQE 131 (295)
T ss_pred cchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC---CcceEEEEEeechhccc
Confidence 1478999999777653232211 22334444432 22468888999999744
No 323
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.51 E-value=3e-07 Score=79.77 Aligned_cols=119 Identities=15% Similarity=0.129 Sum_probs=67.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccc--ccCCCCCCCeeEE------------------EE-----------eeeCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT--VSTFQSEGPRPVM------------------VS-----------RSRAG 86 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~--~~~~~~~t~~~~~------------------~~-----------~~~~~ 86 (243)
+.-.|++||+||+||||++-.|...-... .....-.|.++.. .. .....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 36789999999999999887766442200 0000001111110 00 01235
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (243)
Q Consensus 87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 166 (243)
..+.+|||.|. +..+....+.++.++......-+.+|++.+. -.+.-+.++ +.|+. ...--+++||.|.
T Consensus 282 ~d~ILVDTaGr---s~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~----~~f~~--~~i~~~I~TKlDE 350 (407)
T COG1419 282 CDVILVDTAGR---SQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEII----KQFSL--FPIDGLIFTKLDE 350 (407)
T ss_pred CCEEEEeCCCC---CccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHH----HHhcc--CCcceeEEEcccc
Confidence 57999999998 5566677778888775333444555544442 223333334 33432 1356788999996
Q ss_pred C
Q 026113 167 S 167 (243)
Q Consensus 167 ~ 167 (243)
.
T Consensus 351 T 351 (407)
T COG1419 351 T 351 (407)
T ss_pred c
Confidence 4
No 324
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=1.7e-06 Score=68.47 Aligned_cols=117 Identities=17% Similarity=0.216 Sum_probs=71.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh-
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL- 116 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~- 116 (243)
.+-.|+++|.+++|||+|.-.|...... ...+ +.++.......+...+.+||-||.. .....+.+++.
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~--~Tvt--Siepn~a~~r~gs~~~~LVD~PGH~-------rlR~kl~e~~~~ 105 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHR--GTVT--SIEPNEATYRLGSENVTLVDLPGHS-------RLRRKLLEYLKH 105 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCcc--Ceee--eeccceeeEeecCcceEEEeCCCcH-------HHHHHHHHHccc
Confidence 4478999999999999998877755321 1111 1122223333445568999999994 22233333332
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc----ccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG----EQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~----~~~~~~~ivV~tk~D~~ 167 (243)
...+-+|++| +|...+...-+...+.+-...- ..-..|+.++-||.|+.
T Consensus 106 ~~~akaiVFV--VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 106 NYSAKAIVFV--VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred cccceeEEEE--EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 2367888888 5554555555555555444332 23346899999999986
No 325
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.49 E-value=4.2e-07 Score=76.62 Aligned_cols=88 Identities=25% Similarity=0.321 Sum_probs=65.6
Q ss_pred cCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--------------CC---eEEEEEeCCCC
Q 026113 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--------------AG---FTLNIVDTPGL 97 (243)
Q Consensus 35 ~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~--------------~~---~~~~viDTPG~ 97 (243)
+....++|.+||.+++||||+.|+|+..... ...+|.+|.++....... .+ ..++++|.+|+
T Consensus 16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred CCCCcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 4446799999999999999999999988864 778888888765443321 11 25999999998
Q ss_pred CCCCC----CcHHHHHHHHHHHhcCCCcEEEEEEeC
Q 026113 98 IEGGY----VNYHAIQLIKRFLLNKTIDVLLYVDRL 129 (243)
Q Consensus 98 ~~~~~----~~~~~~~~~~~~~~~~~~~~il~v~~~ 129 (243)
..+.. .....+..+| .+|+|+.|++.
T Consensus 95 vkGAs~G~GLGN~FLs~iR------~vDaifhVVr~ 124 (391)
T KOG1491|consen 95 VKGASAGEGLGNKFLSHIR------HVDAIFHVVRA 124 (391)
T ss_pred ccCcccCcCchHHHHHhhh------hccceeEEEEe
Confidence 75443 3446677776 78888888653
No 326
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.45 E-value=8.4e-07 Score=74.07 Aligned_cols=70 Identities=26% Similarity=0.320 Sum_probs=52.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC-----CcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGE-----KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH 106 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~ 106 (243)
..+.+++++|-+|+|||||||++... ..+.++..|+.|..........+...+.++||||..-++..+.+
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e 215 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVE 215 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHH
Confidence 36799999999999999999997743 33446666666655444344456668999999999888766654
No 327
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.42 E-value=1.1e-05 Score=67.72 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=44.7
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh------cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEE
Q 026113 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL 158 (243)
Q Consensus 85 ~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~------~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~i 158 (243)
.+..+.+|||||... .+....++++++.. ...+|.+++|++... ..........+.+.+ ...-
T Consensus 153 ~~~D~ViIDT~G~~~---~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~---~~~~~~~~~~f~~~~-----~~~g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQ---NKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT---GQNALEQAKVFNEAV-----GLTG 221 (272)
T ss_pred CCCCEEEEeCCCCCc---chHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC---CHHHHHHHHHHHhhC-----CCCE
Confidence 456899999999853 24444555554432 234899999966642 233333334444333 3678
Q ss_pred EEEeCCCCC
Q 026113 159 IVLTHAQLS 167 (243)
Q Consensus 159 vV~tk~D~~ 167 (243)
+|+||.|..
T Consensus 222 ~IlTKlDe~ 230 (272)
T TIGR00064 222 IILTKLDGT 230 (272)
T ss_pred EEEEccCCC
Confidence 999999975
No 328
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.40 E-value=4.2e-06 Score=72.68 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=66.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC------Cccccc--CCCCCC----------CeeEEEEe-e-------------eC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE------KAVTVS--TFQSEG----------PRPVMVSR-S-------------RA 85 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~------~~~~~~--~~~~~t----------~~~~~~~~-~-------------~~ 85 (243)
.+-.++++|++|+||||++..|... .+..+. .+.+.. ........ . ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 3457899999999999998877632 222111 110000 00001100 0 12
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (243)
Q Consensus 86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 165 (243)
+..+.+|||||.. ..+.+..+.+..+.....+|.+++| ++.. .. .....+.+. .|.. ....-+|+||.|
T Consensus 285 ~~D~VLIDTAGr~---~~d~~~l~EL~~l~~~~~p~~~~LV--Lsag-~~--~~d~~~i~~-~f~~--l~i~glI~TKLD 353 (407)
T PRK12726 285 CVDHILIDTVGRN---YLAEESVSEISAYTDVVHPDLTCFT--FSSG-MK--SADVMTILP-KLAE--IPIDGFIITKMD 353 (407)
T ss_pred CCCEEEEECCCCC---ccCHHHHHHHHHHhhccCCceEEEE--CCCc-cc--HHHHHHHHH-hcCc--CCCCEEEEEccc
Confidence 4689999999984 3445666677766654577888888 4331 11 222332222 2332 146788999999
Q ss_pred CC
Q 026113 166 LS 167 (243)
Q Consensus 166 ~~ 167 (243)
..
T Consensus 354 ET 355 (407)
T PRK12726 354 ET 355 (407)
T ss_pred CC
Confidence 74
No 329
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.40 E-value=4.6e-06 Score=74.42 Aligned_cols=124 Identities=17% Similarity=0.270 Sum_probs=73.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCC------------------------------------------------
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ------------------------------------------------ 71 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~------------------------------------------------ 71 (243)
.++++||.-.+||||++..+....+|+.+...
T Consensus 309 PRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RMr 388 (980)
T KOG0447|consen 309 PRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRMR 388 (980)
T ss_pred ceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHHHH
Confidence 59999999999999999998877665433211
Q ss_pred -----CCCCeeEEEEeeeCC---eEEEEEeCCCCCCCCCC------cHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChh
Q 026113 72 -----SEGPRPVMVSRSRAG---FTLNIVDTPGLIEGGYV------NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNL 137 (243)
Q Consensus 72 -----~~t~~~~~~~~~~~~---~~~~viDTPG~~~~~~~------~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~ 137 (243)
++|....+....+.| ..+.++|.||...+-.. .+.+.+..+.++ .+|++||+|+.-. + .+.
T Consensus 389 ~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM--~NPNAIILCIQDG--S-VDA 463 (980)
T KOG0447|consen 389 KNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYM--QNPNAIILCIQDG--S-VDA 463 (980)
T ss_pred hcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHh--cCCCeEEEEeccC--C-cch
Confidence 001111112223333 25889999998754321 122333333344 5899999995322 2 233
Q ss_pred HHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 138 DKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 138 ~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
++..+.-+-..+.. ..+++|+|+||.|+.+.
T Consensus 464 ERSnVTDLVsq~DP-~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 464 ERSIVTDLVSQMDP-HGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhhhHHHHHHhcCC-CCCeeEEEEeecchhhh
Confidence 44333333333332 23789999999999744
No 330
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=3.6e-06 Score=78.78 Aligned_cols=115 Identities=11% Similarity=0.070 Sum_probs=72.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccc-----ccCC------------CCCCCeeEEEEeeeCC-eEEEEEeCCCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT-----VSTF------------QSEGPRPVMVSRSRAG-FTLNIVDTPGLIE 99 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~-----~~~~------------~~~t~~~~~~~~~~~~-~~~~viDTPG~~~ 99 (243)
.--+|.++|...+|||||..+|+-..-.. +... .+.|.........|.+ ..+.+|||||.-|
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 45789999999999999999988332111 1100 1122233334566785 9999999999976
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.. .++.+.++ -.|+.++|++...--..+.+.- +++.... ..|.++++||+|..
T Consensus 89 Ft---~EV~rslr------vlDgavvVvdaveGV~~QTEtv----~rqa~~~--~vp~i~fiNKmDR~ 141 (697)
T COG0480 89 FT---IEVERSLR------VLDGAVVVVDAVEGVEPQTETV----WRQADKY--GVPRILFVNKMDRL 141 (697)
T ss_pred cH---HHHHHHHH------hhcceEEEEECCCCeeecHHHH----HHHHhhc--CCCeEEEEECcccc
Confidence 53 34555555 6688888866643222222222 2222222 26999999999975
No 331
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=1.6e-06 Score=77.34 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccc--------------ccCCCCCCCeeEEEEeeeCC---eEEEEEeCCCCCCCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVT--------------VSTFQSEGPRPVMVSRSRAG---FTLNIVDTPGLIEGGY 102 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~--------------~~~~~~~t~~~~~~~~~~~~---~~~~viDTPG~~~~~~ 102 (243)
-++.++-.-.-|||||...|+...-+. +....+.|...+.....+.+ .-+.+|||||.-|.+.
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 478889999999999999988432111 11223345555555555554 6899999999987654
Q ss_pred CcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
. +.+.+. -++++|+|++..+ ..+.+++..+...|..+ ..+|.|+||+|+...
T Consensus 141 E---VsRsla------ac~G~lLvVDA~q----GvqAQT~anf~lAfe~~--L~iIpVlNKIDlp~a 192 (650)
T KOG0462|consen 141 E---VSRSLA------ACDGALLVVDASQ----GVQAQTVANFYLAFEAG--LAIIPVLNKIDLPSA 192 (650)
T ss_pred e---ehehhh------hcCceEEEEEcCc----CchHHHHHHHHHHHHcC--CeEEEeeeccCCCCC
Confidence 3 223343 6789999955542 23444555555555443 479999999998644
No 332
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.38 E-value=1.8e-06 Score=75.26 Aligned_cols=125 Identities=17% Similarity=0.135 Sum_probs=65.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccc-----ccCCCCCCC----------------eeEEEE----------eeeCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT-----VSTFQSEGP----------------RPVMVS----------RSRAG 86 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~-----~~~~~~~t~----------------~~~~~~----------~~~~~ 86 (243)
+.-.++++|++|+||||++..|.+.-... +.-....+. .+.... ..+.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 34689999999999999998887532100 000000000 000000 11346
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccc---cccEEEEEeC
Q 026113 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI---WKRALIVLTH 163 (243)
Q Consensus 87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~---~~~~ivV~tk 163 (243)
..+.+|||||.. ..+....+.+........+.-.++|++.. .-.+.....++.+....+... ....=+|+||
T Consensus 216 ~DlVLIDTaG~~---~~d~~l~e~La~L~~~~~~~~~lLVLsAt--s~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TK 290 (374)
T PRK14722 216 KHMVLIDTIGMS---QRDRTVSDQIAMLHGADTPVQRLLLLNAT--SHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTK 290 (374)
T ss_pred CCEEEEcCCCCC---cccHHHHHHHHHHhccCCCCeEEEEecCc--cChHHHHHHHHHHHHhhcccccccCCCCEEEEec
Confidence 689999999984 23334444444332223455567774443 222333445555555433110 0145688999
Q ss_pred CCCC
Q 026113 164 AQLS 167 (243)
Q Consensus 164 ~D~~ 167 (243)
.|..
T Consensus 291 lDEt 294 (374)
T PRK14722 291 LDEA 294 (374)
T ss_pred cccC
Confidence 9975
No 333
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.37 E-value=6.5e-06 Score=70.17 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=28.6
Q ss_pred HHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhC
Q 026113 26 LELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 26 ~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg 61 (243)
..+++.+.........|.++|.+|+|||||++.+..
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 345566665556789999999999999999998774
No 334
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.35 E-value=3.2e-06 Score=74.10 Aligned_cols=114 Identities=14% Similarity=0.165 Sum_probs=71.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccC------------C---CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVST------------F---QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 104 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~------------~---~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~ 104 (243)
-+|+++...--|||||+..|+.+.-.+... . .+.|.-.......|++..+.|+||||.-|.+..-
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 478999999999999999999664222111 0 1112222233457889999999999998776543
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 105 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
+ +.+. =.|.+|+++++..-.+.+.... +++.+..+ .+-|+|+||+|...
T Consensus 86 E---Rvl~------MVDgvlLlVDA~EGpMPQTrFV----lkKAl~~g--L~PIVVvNKiDrp~ 134 (603)
T COG1217 86 E---RVLS------MVDGVLLLVDASEGPMPQTRFV----LKKALALG--LKPIVVINKIDRPD 134 (603)
T ss_pred h---hhhh------hcceEEEEEEcccCCCCchhhh----HHHHHHcC--CCcEEEEeCCCCCC
Confidence 3 3332 4688888866543233333332 23333322 46788999999753
No 335
>PRK14974 cell division protein FtsY; Provisional
Probab=98.35 E-value=8.7e-07 Score=76.30 Aligned_cols=71 Identities=15% Similarity=0.280 Sum_probs=44.7
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (243)
Q Consensus 86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 165 (243)
+..+.+|||||... .+......++.......+|.+++|.+.. . .+......+.+.+.. ...-+|+||.|
T Consensus 222 ~~DvVLIDTaGr~~---~~~~lm~eL~~i~~~~~pd~~iLVl~a~--~-g~d~~~~a~~f~~~~-----~~~giIlTKlD 290 (336)
T PRK14974 222 GIDVVLIDTAGRMH---TDANLMDELKKIVRVTKPDLVIFVGDAL--A-GNDAVEQAREFNEAV-----GIDGVILTKVD 290 (336)
T ss_pred CCCEEEEECCCccC---CcHHHHHHHHHHHHhhCCceEEEeeccc--c-chhHHHHHHHHHhcC-----CCCEEEEeeec
Confidence 45799999999853 3445555666554445789999995442 2 233333334443332 35789999999
Q ss_pred CC
Q 026113 166 LS 167 (243)
Q Consensus 166 ~~ 167 (243)
..
T Consensus 291 ~~ 292 (336)
T PRK14974 291 AD 292 (336)
T ss_pred CC
Confidence 75
No 336
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=2.5e-06 Score=83.23 Aligned_cols=135 Identities=14% Similarity=0.149 Sum_probs=75.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCc--ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc-----HH---HHHHH
Q 026113 42 ILVMGKGGVGKSSTVNSIIGEKA--VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN-----YH---AIQLI 111 (243)
Q Consensus 42 IllvG~~g~GKSSlin~llg~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~-----~~---~~~~~ 111 (243)
-++||++|+||||++.. .|... .......+.....+.....+-+..-.+|||.|-+-..... .+ .+..+
T Consensus 128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 47789999999998754 33332 1111111111111111224456677899999965433211 11 23334
Q ss_pred HHHHhcCCCcEEEEEEeCCCcc-cChhHH--------HHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHhhh
Q 026113 112 KRFLLNKTIDVLLYVDRLDVYR-VDNLDK--------QITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRS 182 (243)
Q Consensus 112 ~~~~~~~~~~~il~v~~~d~~~-~~~~~~--------~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~ 182 (243)
+++...+..|+|++.+++.... ....+. .-++.+.+.++.. .|+++++||.|+.+. +++|....+
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~--~PVYl~lTk~Dll~G----F~efF~~l~ 280 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHAR--LPVYLVLTKADLLPG----FEEFFGSLN 280 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccC--CceEEEEeccccccc----HHHHHhccC
Confidence 5554557899999998764321 222222 1244555555544 599999999999743 555544444
Q ss_pred H
Q 026113 183 E 183 (243)
Q Consensus 183 ~ 183 (243)
+
T Consensus 281 ~ 281 (1188)
T COG3523 281 K 281 (1188)
T ss_pred H
Confidence 3
No 337
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.30 E-value=1.8e-05 Score=67.93 Aligned_cols=119 Identities=20% Similarity=0.302 Sum_probs=64.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC------Cccccc-CC-CC-----------CCCeeEEEEe----------------
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE------KAVTVS-TF-QS-----------EGPRPVMVSR---------------- 82 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~------~~~~~~-~~-~~-----------~t~~~~~~~~---------------- 82 (243)
.+-.|+++|.+|+||||++..|.+. .+.... +. .. ...-+.....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4578999999999999998887643 221111 10 00 0000001000
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh------cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc
Q 026113 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR 156 (243)
Q Consensus 83 ~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~------~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~ 156 (243)
...+..+.+|||||.... +....+++++... ...++-+++|++... ..........+.+.+ ..
T Consensus 193 ~~~~~D~ViIDTaGr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~---g~~~~~~a~~f~~~~-----~~ 261 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT---GQNALSQAKAFHEAV-----GL 261 (318)
T ss_pred HhCCCCEEEEeCCCCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC---ChHHHHHHHHHHhhC-----CC
Confidence 123457999999998532 3333334443321 235788889955542 222222223333222 46
Q ss_pred EEEEEeCCCCC
Q 026113 157 ALIVLTHAQLS 167 (243)
Q Consensus 157 ~ivV~tk~D~~ 167 (243)
.-+|+||.|..
T Consensus 262 ~giIlTKlD~t 272 (318)
T PRK10416 262 TGIILTKLDGT 272 (318)
T ss_pred CEEEEECCCCC
Confidence 78999999964
No 338
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=6.6e-06 Score=73.86 Aligned_cols=139 Identities=13% Similarity=0.141 Sum_probs=77.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC---C----------ccc-----------------ccCCCCCCCeeEEEEeeeCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGE---K----------AVT-----------------VSTFQSEGPRPVMVSRSRAG 86 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~---~----------~~~-----------------~~~~~~~t~~~~~~~~~~~~ 86 (243)
+..+.++++|...+|||||.-.++-. - .+. ..+..+.|.+......+...
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 35689999999999999998887732 0 000 00011112222222334455
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccC-----hhHHHHHHHHHHHhcccccccEEEEE
Q 026113 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD-----NLDKQITRAITDNFGEQIWKRALIVL 161 (243)
Q Consensus 87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~-----~~~~~~l~~l~~~~~~~~~~~~ivV~ 161 (243)
..++++|+||..|. ...++.-+ ..+|+-++|++.+...+. ....+-.-.+.+.+|. .++||++
T Consensus 255 ~~~tliDaPGhkdF---i~nmi~g~------sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi---~qlivai 322 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDF---IPNMISGA------SQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGI---SQLIVAI 322 (603)
T ss_pred eeEEEecCCCcccc---chhhhccc------cccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCc---ceEEEEe
Confidence 68999999996433 22322222 378888888766432221 1222233344455663 6899999
Q ss_pred eCCCCCCCCCCCHHHHHHhhhHHHHHHHcc
Q 026113 162 THAQLSLPDRLDYEVFCSKRSEALLKFVSP 191 (243)
Q Consensus 162 tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~ 191 (243)
||+|+.. ++-+.|. +....+..++.+
T Consensus 323 NKmD~V~---Wsq~RF~-eIk~~l~~fL~~ 348 (603)
T KOG0458|consen 323 NKMDLVS---WSQDRFE-EIKNKLSSFLKE 348 (603)
T ss_pred ecccccC---ccHHHHH-HHHHHHHHHHHH
Confidence 9999852 3323332 223455666633
No 339
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.27 E-value=2.3e-06 Score=75.69 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=63.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccc-----ccCCCCCCCe---------------eEEE-----------EeeeCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT-----VSTFQSEGPR---------------PVMV-----------SRSRAG 86 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~-----~~~~~~~t~~---------------~~~~-----------~~~~~~ 86 (243)
..-.|+++|.+|+||||++..|.+..... +.-....+.. .... .....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 34589999999999999999877542110 0000000000 0000 011245
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (243)
Q Consensus 87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 166 (243)
..+.+|||+|.. ..+....+.+........++-.++|++... -.+.-.+++ ..|.. ....=+|+||.|.
T Consensus 270 ~d~VLIDTaGrs---qrd~~~~~~l~~l~~~~~~~~~~LVl~at~--~~~~~~~~~----~~f~~--~~~~~~I~TKlDE 338 (420)
T PRK14721 270 KHMVLIDTVGMS---QRDQMLAEQIAMLSQCGTQVKHLLLLNATS--SGDTLDEVI----SAYQG--HGIHGCIITKVDE 338 (420)
T ss_pred CCEEEecCCCCC---cchHHHHHHHHHHhccCCCceEEEEEcCCC--CHHHHHHHH----HHhcC--CCCCEEEEEeeeC
Confidence 578999999984 333445555555433234566777744432 112222233 33322 1457789999997
Q ss_pred C
Q 026113 167 S 167 (243)
Q Consensus 167 ~ 167 (243)
.
T Consensus 339 t 339 (420)
T PRK14721 339 A 339 (420)
T ss_pred C
Confidence 5
No 340
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.25 E-value=7.9e-06 Score=67.11 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=27.4
Q ss_pred HHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHh
Q 026113 26 LELLGKLKQENVNTLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 26 ~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~ll 60 (243)
.++++.+.+...+...|.+.|.+|+|||||++.|.
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~ 50 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALI 50 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHH
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHH
Confidence 45666666666678999999999999999999876
No 341
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=3.8e-06 Score=64.32 Aligned_cols=118 Identities=13% Similarity=0.163 Sum_probs=71.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC----CCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHH-H
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ----SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLI-K 112 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~-~ 112 (243)
....++++|..++||||++-+.-......-...+ .+|..-......+.+.++.+||.-|+. ..+.+ .
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe--------~lrSlw~ 87 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE--------SLRSLWK 87 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH--------HHHHHHH
Confidence 6799999999999999998775432210101110 112222334455667899999998883 22233 2
Q ss_pred HHHhcCCCcEEEEEEeCCC-cccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 113 RFLLNKTIDVLLYVDRLDV-YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 113 ~~~~~~~~~~il~v~~~d~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.|. ..+|+++++++... .++ +..+..++.+...-. --..|+++..||.|+.
T Consensus 88 ~yY--~~~H~ii~viDa~~~eR~-~~~~t~~~~v~~~E~-leg~p~L~lankqd~q 139 (197)
T KOG0076|consen 88 KYY--WLAHGIIYVIDATDRERF-EESKTAFEKVVENEK-LEGAPVLVLANKQDLQ 139 (197)
T ss_pred HHH--HHhceeEEeecCCCHHHH-HHHHHHHHHHHHHHH-hcCCchhhhcchhhhh
Confidence 333 37899999966643 233 334444444332211 1125999999999974
No 342
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.20 E-value=5.7e-06 Score=77.78 Aligned_cols=121 Identities=14% Similarity=0.112 Sum_probs=64.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCccccc-----CCCCCCCe---------------eEEEE-----------eeeCCe
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVS-----TFQSEGPR---------------PVMVS-----------RSRAGF 87 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~-----~~~~~t~~---------------~~~~~-----------~~~~~~ 87 (243)
.--|+++|.+|+||||++..|.+.-....+ -....+.. ..... ....+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 357899999999999999888864311100 00000000 00000 012345
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 88 ~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.+.||||||.. ..+....+.+........++-+++|++.. .-.+.-.+.++.+....+. ...=+|+||.|..
T Consensus 265 D~VLIDTAGRs---~~d~~l~eel~~l~~~~~p~e~~LVLsAt--~~~~~l~~i~~~f~~~~~~---~i~glIlTKLDEt 336 (767)
T PRK14723 265 HLVLIDTVGMS---QRDRNVSEQIAMLCGVGRPVRRLLLLNAA--SHGDTLNEVVHAYRHGAGE---DVDGCIITKLDEA 336 (767)
T ss_pred CEEEEeCCCCC---ccCHHHHHHHHHHhccCCCCeEEEEECCC--CcHHHHHHHHHHHhhcccC---CCCEEEEeccCCC
Confidence 79999999973 23444555555544334677788884443 2112222333444332111 2456889999975
No 343
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.19 E-value=2.7e-06 Score=75.73 Aligned_cols=119 Identities=21% Similarity=0.223 Sum_probs=64.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC------CCcccccC--CCCCC-----------CeeEEEEe--------------ee
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIG------EKAVTVST--FQSEG-----------PRPVMVSR--------------SR 84 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg------~~~~~~~~--~~~~t-----------~~~~~~~~--------------~~ 84 (243)
.|..|+++|.+|+||||++..|.. ..+..+.. +.+.. .-+..... ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 578899999999999998876652 22211110 00000 00000000 01
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (243)
Q Consensus 85 ~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 164 (243)
.+..+.|+||||.. ..++...++++.......+|.+++|++... .. ..+..... |.+.. ...-+|+||.
T Consensus 174 ~~~DvVIIDTAGr~---~~d~~lm~El~~l~~~~~pdevlLVvda~~---gq---~av~~a~~-F~~~l-~i~gvIlTKl 242 (437)
T PRK00771 174 KKADVIIVDTAGRH---ALEEDLIEEMKEIKEAVKPDEVLLVIDATI---GQ---QAKNQAKA-FHEAV-GIGGIIITKL 242 (437)
T ss_pred hcCCEEEEECCCcc---cchHHHHHHHHHHHHHhcccceeEEEeccc---cH---HHHHHHHH-HHhcC-CCCEEEEecc
Confidence 23479999999984 335556666665544447888999955532 22 22223222 33221 2456788998
Q ss_pred CCC
Q 026113 165 QLS 167 (243)
Q Consensus 165 D~~ 167 (243)
|..
T Consensus 243 D~~ 245 (437)
T PRK00771 243 DGT 245 (437)
T ss_pred cCC
Confidence 863
No 344
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.19 E-value=3.1e-05 Score=75.43 Aligned_cols=103 Identities=10% Similarity=0.019 Sum_probs=62.1
Q ss_pred CcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC------------------eEEEEEeCCCCCCCCCCcHHHHHHH
Q 026113 50 VGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG------------------FTLNIVDTPGLIEGGYVNYHAIQLI 111 (243)
Q Consensus 50 ~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~------------------~~~~viDTPG~~~~~~~~~~~~~~~ 111 (243)
++||||+.+|.+.+++... ..+.|++...+....+. ..+.+|||||..+. ..+
T Consensus 472 ~~KTtLLD~iR~t~v~~~E-aGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F--------~~l 542 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKE-AGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF--------TSL 542 (1049)
T ss_pred cccccHHHHHhCCCccccc-CCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH--------HHH
Confidence 3599999999999874322 22334433222222221 13899999997322 112
Q ss_pred HHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 112 KRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 112 ~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
+. .....+|++++|++++. .+.......+..+... ..|+++|+||+|+.+
T Consensus 543 r~-~g~~~aDivlLVVDa~~-Gi~~qT~e~I~~lk~~-----~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 543 RK-RGGSLADLAVLVVDINE-GFKPQTIEAINILRQY-----KTPFVVAANKIDLIP 592 (1049)
T ss_pred HH-hhcccCCEEEEEEECcc-cCCHhHHHHHHHHHHc-----CCCEEEEEECCCCcc
Confidence 11 11247899999987753 2444455555544432 369999999999863
No 345
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=2.3e-05 Score=68.43 Aligned_cols=115 Identities=12% Similarity=0.141 Sum_probs=71.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh--CCCcccccC-------------------CCCCCCeeEEEEeeeCCeEEEEEeCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSII--GEKAVTVST-------------------FQSEGPRPVMVSRSRAGFTLNIVDTPG 96 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~ll--g~~~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~viDTPG 96 (243)
+.-+.+++-.+-+|||||...|+ |..+...+. ..+.+..+...+..+.+.-+.+.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 35678899999999999998776 332211110 011122333456678899999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..|.. ++..+.+. .+|..+.| +|...--+....-|-.+.++.+ .|++-.+||+|..
T Consensus 91 HeDFS---EDTYRtLt------AvDsAvMV--IDaAKGiE~qT~KLfeVcrlR~----iPI~TFiNKlDR~ 146 (528)
T COG4108 91 HEDFS---EDTYRTLT------AVDSAVMV--IDAAKGIEPQTLKLFEVCRLRD----IPIFTFINKLDRE 146 (528)
T ss_pred ccccc---hhHHHHHH------hhheeeEE--EecccCccHHHHHHHHHHhhcC----CceEEEeeccccc
Confidence 97764 23333332 77899999 5544422323222323334333 6999999999963
No 346
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=4.5e-05 Score=63.47 Aligned_cols=138 Identities=13% Similarity=0.130 Sum_probs=81.6
Q ss_pred hcCCCceEEEEEcCCCCcHHHHHHHHhCCCc------c---------cccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 026113 34 QENVNTLTILVMGKGGVGKSSTVNSIIGEKA------V---------TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98 (243)
Q Consensus 34 ~~~~~~~~IllvG~~g~GKSSlin~llg~~~------~---------~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~ 98 (243)
...+..++|..+|...-|||||..+|+..-. + +.....+.|..+.....+...+.+..+|+||.-
T Consensus 7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa 86 (394)
T COG0050 7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 86 (394)
T ss_pred cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH
Confidence 4556789999999999999999998874310 0 011111223333344556678899999999984
Q ss_pred CCCCCcHHHHHHHHHHH-hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHH
Q 026113 99 EGGYVNYHAIQLIKRFL-LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (243)
Q Consensus 99 ~~~~~~~~~~~~~~~~~-~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~ 177 (243)
| ++++.+ .....|..|+|++.+.-...+....+ .+.+..|- .++++++||+|+.+ +.+.-+.
T Consensus 87 D----------YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi--LlarqvGv---p~ivvflnK~Dmvd--d~ellel 149 (394)
T COG0050 87 D----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHI--LLARQVGV---PYIVVFLNKVDMVD--DEELLEL 149 (394)
T ss_pred H----------HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh--hhhhhcCC---cEEEEEEecccccC--cHHHHHH
Confidence 2 233322 12356888888776543332222111 23444442 46888999999973 2223333
Q ss_pred HHhhhHHHHHHHcc
Q 026113 178 CSKRSEALLKFVSP 191 (243)
Q Consensus 178 ~~~~~~~l~~~i~~ 191 (243)
+ ..+.++++..
T Consensus 150 V---emEvreLLs~ 160 (394)
T COG0050 150 V---EMEVRELLSE 160 (394)
T ss_pred H---HHHHHHHHHH
Confidence 3 4566666655
No 347
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.13 E-value=4.1e-05 Score=69.26 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg 61 (243)
..-.|+++|.+|+||||++..|..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999988764
No 348
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.12 E-value=1.6e-05 Score=66.54 Aligned_cols=118 Identities=19% Similarity=0.161 Sum_probs=67.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC------CcccccCCCC------------CCCeeEEEE-e-------------eeCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGE------KAVTVSTFQS------------EGPRPVMVS-R-------------SRAG 86 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~------~~~~~~~~~~------------~t~~~~~~~-~-------------~~~~ 86 (243)
.-+++++|.+|+||||++..+.+. .+.....-+. ......... . ...+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 369999999999999998877643 1111110000 000000000 0 0124
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (243)
Q Consensus 87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 166 (243)
..+.++||||.. ..+.+..+++.+.+....++-+++|++.. ...+.-..+++.+.. ...-=+|+||.|.
T Consensus 155 ~D~ViIDt~Gr~---~~~~~~l~el~~~~~~~~~~~~~LVl~a~--~~~~d~~~~~~~f~~------~~~~~~I~TKlDe 223 (270)
T PRK06731 155 VDYILIDTAGKN---YRASETVEEMIETMGQVEPDYICLTLSAS--MKSKDMIEIITNFKD------IHIDGIVFTKFDE 223 (270)
T ss_pred CCEEEEECCCCC---cCCHHHHHHHHHHHhhhCCCeEEEEEcCc--cCHHHHHHHHHHhCC------CCCCEEEEEeecC
Confidence 689999999984 33445555666655445677888884443 222333344444432 1467889999997
Q ss_pred C
Q 026113 167 S 167 (243)
Q Consensus 167 ~ 167 (243)
.
T Consensus 224 t 224 (270)
T PRK06731 224 T 224 (270)
T ss_pred C
Confidence 5
No 349
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.08 E-value=1.4e-05 Score=71.18 Aligned_cols=71 Identities=14% Similarity=0.073 Sum_probs=38.2
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh-cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (243)
Q Consensus 86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~-~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 164 (243)
+..+.||||||.. ..+......+..++. ...+.-+.+|++... -.....++. +.|..- ...-+|+||.
T Consensus 299 ~~DlVlIDt~G~~---~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~--~~~~l~~~~----~~f~~~--~~~~vI~TKl 367 (424)
T PRK05703 299 DCDVILIDTAGRS---QRDKRLIEELKALIEFSGEPIDVYLVLSATT--KYEDLKDIY----KHFSRL--PLDGLIFTKL 367 (424)
T ss_pred CCCEEEEeCCCCC---CCCHHHHHHHHHHHhccCCCCeEEEEEECCC--CHHHHHHHH----HHhCCC--CCCEEEEecc
Confidence 4679999999984 334344445555543 223445566644432 112222333 333321 2346899999
Q ss_pred CCC
Q 026113 165 QLS 167 (243)
Q Consensus 165 D~~ 167 (243)
|..
T Consensus 368 Det 370 (424)
T PRK05703 368 DET 370 (424)
T ss_pred ccc
Confidence 964
No 350
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.08 E-value=6.7e-06 Score=70.80 Aligned_cols=76 Identities=21% Similarity=0.326 Sum_probs=56.0
Q ss_pred HHHHHHHHhhhhc--CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113 23 TKLLELLGKLKQE--NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (243)
Q Consensus 23 ~~l~~~~~~~~~~--~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~ 100 (243)
..|..+++.+.+. +++.+.+.+||.+++||||+||.|-...+..+.+.++.|.--++. .--+.+.+||+||+--+
T Consensus 289 galI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYI---tLmkrIfLIDcPGvVyp 365 (572)
T KOG2423|consen 289 GALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYI---TLMKRIFLIDCPGVVYP 365 (572)
T ss_pred hHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHH---HHHhceeEecCCCccCC
Confidence 3455555555543 347799999999999999999999999988888888776532221 12346899999998654
Q ss_pred C
Q 026113 101 G 101 (243)
Q Consensus 101 ~ 101 (243)
.
T Consensus 366 s 366 (572)
T KOG2423|consen 366 S 366 (572)
T ss_pred C
Confidence 4
No 351
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=1.5e-05 Score=62.00 Aligned_cols=117 Identities=14% Similarity=0.142 Sum_probs=70.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeE-EEEeeeCC-eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV-MVSRSRAG-FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~-~~~~~~~~-~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++++++|..|.||++++++.+-... .....++.+.... ....+..| .++.+|||+|+.-.....+- .++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeF-e~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdg--yyI---- 81 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEF-EKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDG--YYI---- 81 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccc-eecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccc--cEE----
Confidence 468999999999999999998875542 2212222222211 11222334 68999999999644332221 011
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.+..++ +++++...-.-....+|.+.+.+.++. .|+++++||.|.-
T Consensus 82 --~~qcAi-imFdVtsr~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~ 127 (216)
T KOG0096|consen 82 --QGQCAI-IMFDVTSRFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIK 127 (216)
T ss_pred --ecceeE-EEeeeeehhhhhcchHHHHHHHHHhcC---CCeeeeccceecc
Confidence 233444 443444322334556677777777665 6999999999874
No 352
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=6.7e-05 Score=65.94 Aligned_cols=119 Identities=16% Similarity=0.247 Sum_probs=62.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC----------Cccccc--CCCCC-----------CCeeEEEE----------eee
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE----------KAVTVS--TFQSE-----------GPRPVMVS----------RSR 84 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~----------~~~~~~--~~~~~-----------t~~~~~~~----------~~~ 84 (243)
.+..|+++|++|+||||++..|... .+..+. .+... ..-+.... ...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 4578999999999999998776532 111111 00000 00000100 012
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-CcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeC
Q 026113 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT-IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 163 (243)
Q Consensus 85 ~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~-~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk 163 (243)
.+..+.+|||||..- .+...+..+.+.+.... .+-+++|++... - ..+ ..+.+.+ |.. ....=+|+||
T Consensus 253 ~~~DlVLIDTaGr~~---~~~~~l~el~~~l~~~~~~~e~~LVlsat~--~-~~~--~~~~~~~-~~~--~~~~~~I~TK 321 (388)
T PRK12723 253 KDFDLVLVDTIGKSP---KDFMKLAEMKELLNACGRDAEFHLAVSSTT--K-TSD--VKEIFHQ-FSP--FSYKTVIFTK 321 (388)
T ss_pred CCCCEEEEcCCCCCc---cCHHHHHHHHHHHHhcCCCCeEEEEEcCCC--C-HHH--HHHHHHH-hcC--CCCCEEEEEe
Confidence 456799999999853 23333555555553223 335677744432 1 222 1222322 221 1367889999
Q ss_pred CCCC
Q 026113 164 AQLS 167 (243)
Q Consensus 164 ~D~~ 167 (243)
.|..
T Consensus 322 lDet 325 (388)
T PRK12723 322 LDET 325 (388)
T ss_pred ccCC
Confidence 9975
No 353
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.04 E-value=5.2e-05 Score=65.75 Aligned_cols=77 Identities=10% Similarity=0.109 Sum_probs=46.9
Q ss_pred eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcc-------cChhHHHHHHHHHHHhccc--
Q 026113 82 RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-------VDNLDKQITRAITDNFGEQ-- 152 (243)
Q Consensus 82 ~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~-------~~~~~~~~l~~l~~~~~~~-- 152 (243)
..+.+..+.+||..|.. .....+.. |+ .++++|++|+++.... ........+..+...+...
T Consensus 179 f~~~~~~~~~~DvgGqr---~~R~kW~~----~f--~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 179 FIVKKLFFRMFDVGGQR---SERKKWIH----CF--DNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred EEECCeEEEEEecCCch---hhhhhHHH----Hh--CCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 34566778999999983 22223332 33 4899999998875321 0112233444455544422
Q ss_pred ccccEEEEEeCCCCC
Q 026113 153 IWKRALIVLTHAQLS 167 (243)
Q Consensus 153 ~~~~~ivV~tk~D~~ 167 (243)
...|+++++||.|+.
T Consensus 250 ~~~piil~~NK~D~~ 264 (342)
T smart00275 250 ANTSIILFLNKIDLF 264 (342)
T ss_pred cCCcEEEEEecHHhH
Confidence 236999999999984
No 354
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.02 E-value=0.00026 Score=55.16 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=42.9
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (243)
Q Consensus 86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 165 (243)
+..+.++||||... .+......+..+.....++.+++|++.. . .....+....+.+..+ ..-+|+||.|
T Consensus 82 ~~d~viiDt~g~~~---~~~~~l~~l~~l~~~~~~~~~~lVv~~~--~-~~~~~~~~~~~~~~~~-----~~~viltk~D 150 (173)
T cd03115 82 NFDVVIVDTAGRLQ---IDENLMEELKKIKRVVKPDEVLLVVDAM--T-GQDAVNQAKAFNEALG-----ITGVILTKLD 150 (173)
T ss_pred CCCEEEEECcccch---hhHHHHHHHHHHHhhcCCCeEEEEEECC--C-ChHHHHHHHHHHhhCC-----CCEEEEECCc
Confidence 55689999999842 2444555555444334589999996653 2 2233344444443332 3677889999
Q ss_pred CC
Q 026113 166 LS 167 (243)
Q Consensus 166 ~~ 167 (243)
..
T Consensus 151 ~~ 152 (173)
T cd03115 151 GD 152 (173)
T ss_pred CC
Confidence 75
No 355
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=5e-06 Score=73.18 Aligned_cols=118 Identities=16% Similarity=0.229 Sum_probs=61.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC-------ccccc-C-CCCCCC-----------eeEEEE---------eeeCCeEE
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK-------AVTVS-T-FQSEGP-----------RPVMVS---------RSRAGFTL 89 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~-------~~~~~-~-~~~~t~-----------~~~~~~---------~~~~~~~~ 89 (243)
+..++++|.+|+||||++..|.... +.... + +..... -+.... ....+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568999999999999988776421 11110 0 000000 000000 00135678
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHh---cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113 90 NIVDTPGLIEGGYVNYHAIQLIKRFLL---NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (243)
Q Consensus 90 ~viDTPG~~~~~~~~~~~~~~~~~~~~---~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 166 (243)
.+|||||... .+....+.+.+++. ...++-+++|++... -.+......+ .|.. ....=+|+||.|.
T Consensus 303 VLIDTaGr~~---rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~--~~~~~~~~~~----~f~~--~~~~glIlTKLDE 371 (432)
T PRK12724 303 ILIDTAGYSH---RNLEQLERMQSFYSCFGEKDSVENLLVLSSTS--SYHHTLTVLK----AYES--LNYRRILLTKLDE 371 (432)
T ss_pred EEEeCCCCCc---cCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC--CHHHHHHHHH----HhcC--CCCCEEEEEcccC
Confidence 9999999842 22334444554442 123456677744432 1222233333 3321 1467889999997
Q ss_pred C
Q 026113 167 S 167 (243)
Q Consensus 167 ~ 167 (243)
.
T Consensus 372 t 372 (432)
T PRK12724 372 A 372 (432)
T ss_pred C
Confidence 5
No 356
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.02 E-value=4e-05 Score=65.85 Aligned_cols=77 Identities=12% Similarity=0.165 Sum_probs=46.6
Q ss_pred eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcc-------cChhHHHHHHHHHHHhccc--
Q 026113 82 RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-------VDNLDKQITRAITDNFGEQ-- 152 (243)
Q Consensus 82 ~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~-------~~~~~~~~l~~l~~~~~~~-- 152 (243)
..+.+..+.+||++|+.. ....+.. |+ .++++|++|+++.... ....-...+..+...+...
T Consensus 156 f~~~~~~~~~~DvgGq~~---~R~kW~~----~f--~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 156 FTIKNLKFRMFDVGGQRS---ERKKWIH----CF--EDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred EEecceEEEEECCCCCcc---cchhHHH----Hh--CCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 345677899999999832 2333333 33 4899999998875321 0122233344444444321
Q ss_pred ccccEEEEEeCCCCC
Q 026113 153 IWKRALIVLTHAQLS 167 (243)
Q Consensus 153 ~~~~~ivV~tk~D~~ 167 (243)
...|+++++||.|+.
T Consensus 227 ~~~pill~~NK~D~f 241 (317)
T cd00066 227 ANTSIILFLNKKDLF 241 (317)
T ss_pred cCCCEEEEccChHHH
Confidence 237999999999974
No 357
>PRK10867 signal recognition particle protein; Provisional
Probab=98.02 E-value=0.00013 Score=64.97 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=40.3
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (243)
Q Consensus 86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 165 (243)
+..+.|+||||... .++...+++......-.++-+++|++. . ..+......+.+.+.+ ...-+|+||.|
T Consensus 183 ~~DvVIIDTaGrl~---~d~~lm~eL~~i~~~v~p~evllVlda--~-~gq~av~~a~~F~~~~-----~i~giIlTKlD 251 (433)
T PRK10867 183 GYDVVIVDTAGRLH---IDEELMDELKAIKAAVNPDEILLVVDA--M-TGQDAVNTAKAFNEAL-----GLTGVILTKLD 251 (433)
T ss_pred CCCEEEEeCCCCcc---cCHHHHHHHHHHHHhhCCCeEEEEEec--c-cHHHHHHHHHHHHhhC-----CCCEEEEeCcc
Confidence 45799999999842 344444555444333467888898443 2 2233334444444322 24567779988
Q ss_pred C
Q 026113 166 L 166 (243)
Q Consensus 166 ~ 166 (243)
.
T Consensus 252 ~ 252 (433)
T PRK10867 252 G 252 (433)
T ss_pred C
Confidence 5
No 358
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.02 E-value=4.7e-05 Score=63.61 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=30.5
Q ss_pred HHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHh
Q 026113 26 LELLGKLKQENVNTLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 26 ~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~ll 60 (243)
.+++.++.+...++..|.+.|.+|+|||||+..|.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~ 72 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALG 72 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHH
Confidence 46777777777789999999999999999998876
No 359
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.01 E-value=6.8e-06 Score=70.76 Aligned_cols=74 Identities=23% Similarity=0.388 Sum_probs=54.0
Q ss_pred HHHHHHhhhhc--CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 026113 25 LLELLGKLKQE--NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (243)
Q Consensus 25 l~~~~~~~~~~--~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~ 101 (243)
+-+.++..... -+..+++.++|-+++||||+||+|.......++..|+.|..-+. ..-+..+.++|.||+.=..
T Consensus 236 l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqe---V~Ldk~i~llDsPgiv~~~ 311 (435)
T KOG2484|consen 236 LMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQE---VKLDKKIRLLDSPGIVPPS 311 (435)
T ss_pred HHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhh---eeccCCceeccCCceeecC
Confidence 34444444432 35789999999999999999999999988777777776653222 2346689999999976443
No 360
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.98 E-value=2.2e-05 Score=68.70 Aligned_cols=142 Identities=25% Similarity=0.349 Sum_probs=80.8
Q ss_pred cccCChhhHHHHHHHHHh-hhhc---CCCceEEEEEcCCCCcHHHHHHHHh------CCCcccccC--------------
Q 026113 14 IQQFPPATQTKLLELLGK-LKQE---NVNTLTILVMGKGGVGKSSTVNSII------GEKAVTVST-------------- 69 (243)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~-~~~~---~~~~~~IllvG~~g~GKSSlin~ll------g~~~~~~~~-------------- 69 (243)
-+++.....++|-+++.. ..+. ...|..|+++|--|+||||..-.|. |.++.-+..
T Consensus 71 ~q~~iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~L 150 (451)
T COG0541 71 GQQFIKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQL 150 (451)
T ss_pred HHHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHH
Confidence 345556667777777763 2222 2357899999999999999765554 222111110
Q ss_pred --------CCCC-CCeeEE------EEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCccc
Q 026113 70 --------FQSE-GPRPVM------VSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV 134 (243)
Q Consensus 70 --------~~~~-t~~~~~------~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~ 134 (243)
++.. ..++.. ......+..+.||||+|-. ..+++..++++..-..-.||=+|+| +|.. .
T Consensus 151 a~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl---~ide~Lm~El~~Ik~~~~P~E~llV--vDam-~ 224 (451)
T COG0541 151 AEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRL---HIDEELMDELKEIKEVINPDETLLV--VDAM-I 224 (451)
T ss_pred HHHcCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc---cccHHHHHHHHHHHhhcCCCeEEEE--Eecc-c
Confidence 0110 000000 0001234579999999984 4466777777766555689999999 5532 3
Q ss_pred ChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113 135 DNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (243)
Q Consensus 135 ~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 166 (243)
.+.-....+.+.+..+ -.=+|+||.|-
T Consensus 225 GQdA~~~A~aF~e~l~-----itGvIlTKlDG 251 (451)
T COG0541 225 GQDAVNTAKAFNEALG-----ITGVILTKLDG 251 (451)
T ss_pred chHHHHHHHHHhhhcC-----CceEEEEcccC
Confidence 3444455555554432 34456666654
No 361
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.95 E-value=3.2e-05 Score=59.64 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 026113 42 ILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 42 IllvG~~g~GKSSlin~llg~ 62 (243)
++++|..|+||||+++.+++.
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 678999999999999998865
No 362
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.94 E-value=7.9e-05 Score=56.21 Aligned_cols=139 Identities=16% Similarity=0.089 Sum_probs=78.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
-.++|.++|.+..|||||.-...+... ........+..+....... ....+.+||.-|..+... .+--
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~-de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n-------~lPi-- 88 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEY-DEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFIN-------MLPI-- 88 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchh-HHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhc-------cCce--
Confidence 569999999999999999988887753 1111111122222222222 345788999998842211 1110
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHhhhHHHHHHH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFV 189 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i 189 (243)
...++-+||+++++.... ......+|.++..|-+..---|+|+||-|+.-.-..++++.+........+.+
T Consensus 89 ac~dsvaIlFmFDLt~r~---TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~m 159 (205)
T KOG1673|consen 89 ACKDSVAILFMFDLTRRS---TLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVM 159 (205)
T ss_pred eecCcEEEEEEEecCchH---HHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHh
Confidence 114778899998876532 23345566666666433234578999997642212234444433333334444
No 363
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.91 E-value=1.9e-05 Score=70.26 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=41.2
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (243)
Q Consensus 86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 165 (243)
+..+.|+||||... .++...+++..+.....++.+++|++.. ..+......+.+.+.. ...=+|+||.|
T Consensus 182 ~~DvVIIDTaGr~~---~d~~l~~eL~~i~~~~~p~e~lLVvda~---tgq~~~~~a~~f~~~v-----~i~giIlTKlD 250 (428)
T TIGR00959 182 GFDVVIVDTAGRLQ---IDEELMEELAAIKEILNPDEILLVVDAM---TGQDAVNTAKTFNERL-----GLTGVVLTKLD 250 (428)
T ss_pred CCCEEEEeCCCccc---cCHHHHHHHHHHHHhhCCceEEEEEecc---chHHHHHHHHHHHhhC-----CCCEEEEeCcc
Confidence 45799999999843 3444555555544334688889995432 2233344444444332 24566688887
Q ss_pred C
Q 026113 166 L 166 (243)
Q Consensus 166 ~ 166 (243)
.
T Consensus 251 ~ 251 (428)
T TIGR00959 251 G 251 (428)
T ss_pred C
Confidence 4
No 364
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.00019 Score=60.55 Aligned_cols=135 Identities=18% Similarity=0.108 Sum_probs=75.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccccc-------------------CCCCCCC---eeEEEEeee------CCeE
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS-------------------TFQSEGP---RPVMVSRSR------AGFT 88 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~-------------------~~~~~t~---~~~~~~~~~------~~~~ 88 (243)
+..++|.++|...-|||||..+|.|--....+ .++.+.. ......+.. --+.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 35799999999999999999999986221110 0111110 000001111 1246
Q ss_pred EEEEeCCCCCCCCCCcHHHHHHHHHHHhc-CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 89 LNIVDTPGLIEGGYVNYHAIQLIKRFLLN-KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 89 ~~viDTPG~~~~~~~~~~~~~~~~~~~~~-~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+.++|.||.. -. |...++. .--|+.|+|+..++......-++-+-. .+..|- +++|+|-||.|+.
T Consensus 88 VSfVDaPGHe-------~L---MATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~A-leIigi---k~iiIvQNKIDlV 153 (415)
T COG5257 88 VSFVDAPGHE-------TL---MATMLSGAALMDGALLVIAANEPCPQPQTREHLMA-LEIIGI---KNIIIVQNKIDLV 153 (415)
T ss_pred EEEeeCCchH-------HH---HHHHhcchhhhcceEEEEecCCCCCCCchHHHHHH-Hhhhcc---ceEEEEeccccee
Confidence 9999999982 11 2222220 123778888777765543333322211 123332 7999999999996
Q ss_pred CCCCCCHHHHHHhhhHHHHHHHcc
Q 026113 168 LPDRLDYEVFCSKRSEALLKFVSP 191 (243)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~~i~~ 191 (243)
. -++.+++ -+.+++|++.
T Consensus 154 ~-----~E~AlE~-y~qIk~FvkG 171 (415)
T COG5257 154 S-----RERALEN-YEQIKEFVKG 171 (415)
T ss_pred c-----HHHHHHH-HHHHHHHhcc
Confidence 2 3333333 4567777754
No 365
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.85 E-value=6.7e-05 Score=66.20 Aligned_cols=114 Identities=15% Similarity=0.193 Sum_probs=68.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccc--------------ccCCCCCCCeeEEEEeee-----CCeEEEEEeCCCCCCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVT--------------VSTFQSEGPRPVMVSRSR-----AGFTLNIVDTPGLIEGG 101 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~--------------~~~~~~~t~~~~~~~~~~-----~~~~~~viDTPG~~~~~ 101 (243)
+..++..-.-|||||...|+...-.. .....+.|...+.....+ ....+.+|||||.-|..
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 45566677889999999988542111 111122333333333322 23579999999998765
Q ss_pred CCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
.. +.+.+. .+.+.|+|++..+ ..+.+++..+--.+..+ .-+|.|+||+|+...
T Consensus 91 YE---VSRSLA------ACEGalLvVDAsQ----GveAQTlAN~YlAle~~--LeIiPViNKIDLP~A 143 (603)
T COG0481 91 YE---VSRSLA------ACEGALLVVDASQ----GVEAQTLANVYLALENN--LEIIPVLNKIDLPAA 143 (603)
T ss_pred EE---ehhhHh------hCCCcEEEEECcc----chHHHHHHHHHHHHHcC--cEEEEeeecccCCCC
Confidence 42 223343 4566777744432 34566666665555543 479999999999644
No 366
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.00021 Score=64.42 Aligned_cols=111 Identities=20% Similarity=0.243 Sum_probs=66.3
Q ss_pred cCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 35 ~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
....|+-++++|++|+||||||.+|...-....-+. -..+.+ ......+.+++..+|.- -. ..+.. .
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~---i~GPiT-vvsgK~RRiTflEcp~D--l~----~miDv-a-- 131 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDE---IRGPIT-VVSGKTRRITFLECPSD--LH----QMIDV-A-- 131 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhc---cCCceE-EeecceeEEEEEeChHH--HH----HHHhH-H--
Confidence 345788999999999999999999875431111000 001111 12234467999999831 11 22222 2
Q ss_pred HhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.=+|+||+. +|... +.-+...+|..+... | ...++-|+|+.|+.
T Consensus 132 ---KIaDLVlLl--IdgnfGfEMETmEFLnil~~H-G---mPrvlgV~ThlDlf 176 (1077)
T COG5192 132 ---KIADLVLLL--IDGNFGFEMETMEFLNILISH-G---MPRVLGVVTHLDLF 176 (1077)
T ss_pred ---HhhheeEEE--eccccCceehHHHHHHHHhhc-C---CCceEEEEeecccc
Confidence 257999999 54433 434445555554443 3 25799999999997
No 367
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.80 E-value=2.8e-05 Score=63.60 Aligned_cols=116 Identities=20% Similarity=0.282 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc----HHHHHHHHHHH
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN----YHAIQLIKRFL 115 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~----~~~~~~~~~~~ 115 (243)
-++-++|-+.+||||++..|.|... .+..+..++-.+......+.+-++++.|.||+.+..... .+++..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviav----- 133 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAV----- 133 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEE-----
Confidence 4899999999999999999998863 455555555555555666888999999999998764432 222222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccc-cccEEEEEeCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI-WKRALIVLTHAQ 165 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~-~~~~ivV~tk~D 165 (243)
.+.+++|++|.++ ... -..++.++.-.+.||-.. ..|--+.+.|.|
T Consensus 134 -artcnli~~vld~--~kp-~~hk~~ie~eleg~girlnk~pp~i~~kkKd 180 (358)
T KOG1487|consen 134 -ARTCNLIFIVLDV--LKP-LSHKKIIEKELEGFGIRLNKQPPNIGTKKKD 180 (358)
T ss_pred -eecccEEEEEeec--cCc-ccHHHHHHHhhhcceeeccCCCCCccccccc
Confidence 2478999999443 232 346778887778887431 234444445544
No 368
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=9.7e-05 Score=55.04 Aligned_cols=124 Identities=17% Similarity=0.241 Sum_probs=70.9
Q ss_pred HHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 026113 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 107 (243)
Q Consensus 28 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~ 107 (243)
..+.+.... .+.+|+++|-.|+||+++.-.+--.++.. ..|+.+ .......+.+.++.+||.-|.... .+
T Consensus 8 ~f~~L~g~e-~e~rililgldGaGkttIlyrlqvgevvt--tkPtig--fnve~v~yKNLk~~vwdLggqtSi---rP-- 77 (182)
T KOG0072|consen 8 LFKALQGPE-REMRILILGLDGAGKTTILYRLQVGEVVT--TKPTIG--FNVETVPYKNLKFQVWDLGGQTSI---RP-- 77 (182)
T ss_pred HHHHhcCCc-cceEEEEeeccCCCeeEEEEEcccCcccc--cCCCCC--cCccccccccccceeeEccCcccc---cH--
Confidence 334444322 67999999999999999765543222211 122211 223344567889999999888532 22
Q ss_pred HHHHHHHHhcCCCcEEEEEEeC-CCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 108 IQLIKRFLLNKTIDVLLYVDRL-DVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 108 ~~~~~~~~~~~~~~~il~v~~~-d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+.|.|+ .+.+++|||++- |..+..-.-..+...+++---.+ --++++.||.|..
T Consensus 78 --yWRcYy--~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~--a~llv~anKqD~~ 132 (182)
T KOG0072|consen 78 --YWRCYY--ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH--AKLLVFANKQDYS 132 (182)
T ss_pred --HHHHHh--cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcC--ceEEEEeccccch
Confidence 344444 488999999554 22233333333343333321111 3578888999963
No 369
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.0001 Score=65.11 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=50.4
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccc--cEEEEEe
Q 026113 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWK--RALIVLT 162 (243)
Q Consensus 85 ~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~--~~ivV~t 162 (243)
.|..+.++||+|-- +.++.....+.++.....||.||+| -+.. ...+....+..+.+.++..... -=-+++|
T Consensus 465 ~gfDVvLiDTAGR~---~~~~~lm~~l~k~~~~~~pd~i~~v--geal-vg~dsv~q~~~fn~al~~~~~~r~id~~~lt 538 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRM---HNNAPLMTSLAKLIKVNKPDLILFV--GEAL-VGNDSVDQLKKFNRALADHSTPRLIDGILLT 538 (587)
T ss_pred cCCCEEEEeccccc---cCChhHHHHHHHHHhcCCCceEEEe--hhhh-hCcHHHHHHHHHHHHHhcCCCccccceEEEE
Confidence 46679999999973 3445566677777777899999999 4321 2333445566666666543211 1347889
Q ss_pred CCCCC
Q 026113 163 HAQLS 167 (243)
Q Consensus 163 k~D~~ 167 (243)
|+|-.
T Consensus 539 k~dtv 543 (587)
T KOG0781|consen 539 KFDTV 543 (587)
T ss_pred eccch
Confidence 99853
No 370
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.00026 Score=64.87 Aligned_cols=115 Identities=17% Similarity=0.277 Sum_probs=66.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccC-------CCC---------CCCe--eEEEE-eeeCC--eEEEEEeCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVST-------FQS---------EGPR--PVMVS-RSRAG--FTLNIVDTPG 96 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~-------~~~---------~t~~--~~~~~-~~~~~--~~~~viDTPG 96 (243)
.-.++.++|.-+.|||+|...|.++.-..... +.. ++.. +.+.. ....+ +-+.++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 34689999999999999999988764311100 000 0000 00000 11122 3588999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.-+. ++ +....++ -+|++++|+++-.--....++-+-+.++. ..++++|+||.|..
T Consensus 207 HVnF--~D-E~ta~l~------~sDgvVlvvDv~EGVmlntEr~ikhaiq~------~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVNF--SD-ETTASLR------LSDGVVLVVDVAEGVMLNTERIIKHAIQN------RLPIVVVINKVDRL 262 (971)
T ss_pred cccc--hH-HHHHHhh------hcceEEEEEEcccCceeeHHHHHHHHHhc------cCcEEEEEehhHHH
Confidence 8543 22 4444444 78999999776332122333322222222 26999999999874
No 371
>PRK01889 GTPase RsgA; Reviewed
Probab=97.76 E-value=3.2e-05 Score=67.43 Aligned_cols=26 Identities=42% Similarity=0.771 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAV 65 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~ 65 (243)
-+++++|.+|+|||||+|.|+|....
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~~ 221 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEVQ 221 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhccc
Confidence 58999999999999999999987543
No 372
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00056 Score=58.30 Aligned_cols=114 Identities=18% Similarity=0.270 Sum_probs=63.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC--CCcccccCCCCCCCeeEEEEe--------------eeCCeEEEEEeCCCCCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIG--EKAVTVSTFQSEGPRPVMVSR--------------SRAGFTLNIVDTPGLIEGG 101 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg--~~~~~~~~~~~~t~~~~~~~~--------------~~~~~~~~viDTPG~~~~~ 101 (243)
..+++.++|...+|||+|..+|.. ...++.....+++ ....... +....++.++|+||..
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~e-RgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa--- 81 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTE-RGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA--- 81 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccc-cceeEeecceeeecccccccCccccceeEEEeCCCcH---
Confidence 458999999999999999999873 3222221111111 1111110 1123467999999983
Q ss_pred CCcHHHHHHHHHHHh-cCCCcEEEEEEeCCCcccCh-hHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 102 YVNYHAIQLIKRFLL-NKTIDVLLYVDRLDVYRVDN-LDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 102 ~~~~~~~~~~~~~~~-~~~~~~il~v~~~d~~~~~~-~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
. .++..+- ..=.|+.++|+++..-.-++ .+.- .+.+.+. +..++|+||+|..++
T Consensus 82 ----s---LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcL---iig~~~c----~klvvvinkid~lpE 137 (522)
T KOG0461|consen 82 ----S---LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECL---IIGELLC----KKLVVVINKIDVLPE 137 (522)
T ss_pred ----H---HHHHHHhhhheeeeeeEEEehhcccccccchhh---hhhhhhc----cceEEEEeccccccc
Confidence 2 2333331 13468888886653211111 1111 2223322 578999999988744
No 373
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.75 E-value=6e-05 Score=67.83 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.--++++|.+|+||||++..|.+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 357899999999999999888753
No 374
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00042 Score=60.73 Aligned_cols=113 Identities=21% Similarity=0.135 Sum_probs=73.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccc--ccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVT--VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~ 118 (243)
.|+..|.---|||||+.++.|..... .....+.|.+...+.....+..+.++|+||+. +....+-.- ..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~-------~~i~~miag--~~ 72 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHP-------DFISNLLAG--LG 72 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcH-------HHHHHHHhh--hc
Confidence 46778888899999999999876322 12223344444455555666689999999994 222222221 14
Q ss_pred CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..|..++|++.|+ .+.....+.+ .+.+.||. .+.++|+||+|..
T Consensus 73 ~~d~alLvV~~de-Gl~~qtgEhL-~iLdllgi---~~giivltk~D~~ 116 (447)
T COG3276 73 GIDYALLVVAADE-GLMAQTGEHL-LILDLLGI---KNGIIVLTKADRV 116 (447)
T ss_pred CCceEEEEEeCcc-CcchhhHHHH-HHHHhcCC---CceEEEEeccccc
Confidence 7899999977754 2333333333 33456665 6889999999986
No 375
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.74 E-value=0.00054 Score=59.05 Aligned_cols=78 Identities=13% Similarity=0.212 Sum_probs=46.5
Q ss_pred EeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcc-cChhH------HHHHHHHHHHhccc-
Q 026113 81 SRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLD------KQITRAITDNFGEQ- 152 (243)
Q Consensus 81 ~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~-~~~~~------~~~l~~l~~~~~~~- 152 (243)
.....+.++.++|.+|+- . +..+.+. |+ .++++||+|+.+.... ...++ .+.++.+...+...
T Consensus 189 ~F~~k~~~f~~~DvGGQR---s---eRrKWih-cF--e~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 189 EFTIKGLKFRMFDVGGQR---S---ERKKWIH-CF--EDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred EEEeCCCceEEEeCCCcH---H---HhhhHHH-hh--cCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 445677889999999972 1 2222222 33 5999999998774332 11122 22333344433322
Q ss_pred -ccccEEEEEeCCCCC
Q 026113 153 -IWKRALIVLTHAQLS 167 (243)
Q Consensus 153 -~~~~~ivV~tk~D~~ 167 (243)
...++|+.+||.|+.
T Consensus 260 F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 260 FANTSIILFLNKKDLF 275 (354)
T ss_pred cccCcEEEEeecHHHH
Confidence 225799999999995
No 376
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.00018 Score=62.12 Aligned_cols=90 Identities=22% Similarity=0.267 Sum_probs=55.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC------CCcccc-------cCC------CCCCCeeEEEE----------------
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIG------EKAVTV-------STF------QSEGPRPVMVS---------------- 81 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg------~~~~~~-------~~~------~~~t~~~~~~~---------------- 81 (243)
.++--|+++|-.|+||||..-.+.. ....-+ ..+ .....-+.+..
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 3567899999999999998766552 211110 000 00011111111
Q ss_pred eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeC
Q 026113 82 RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRL 129 (243)
Q Consensus 82 ~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~ 129 (243)
...++..+.|+||.|-. ..+.+.+++++.+...-.||-+|+|.+.
T Consensus 179 fKke~fdvIIvDTSGRh---~qe~sLfeEM~~v~~ai~Pd~vi~VmDa 223 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRH---KQEASLFEEMKQVSKAIKPDEIIFVMDA 223 (483)
T ss_pred HHhcCCcEEEEeCCCch---hhhHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 11245679999999984 4456778888877766799999999443
No 377
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.61 E-value=0.0013 Score=50.06 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 026113 42 ILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 42 IllvG~~g~GKSSlin~llg 61 (243)
|.++|..|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999888764
No 378
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.59 E-value=0.00012 Score=62.11 Aligned_cols=120 Identities=20% Similarity=0.340 Sum_probs=68.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC------CcccccC-------------------C---C-CCCCeeEE--E----E
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGE------KAVTVST-------------------F---Q-SEGPRPVM--V----S 81 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~------~~~~~~~-------------------~---~-~~t~~~~~--~----~ 81 (243)
.+|.-|+++|-.|+||||.|-.|... .+..... . . ..+.++.. + .
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 35899999999999999988776632 1110000 0 0 00111100 0 0
Q ss_pred eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH---h---cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccc
Q 026113 82 RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL---L---NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWK 155 (243)
Q Consensus 82 ~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~---~---~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~ 155 (243)
..-.+..+.++||+|-.-. .....+++++.. . ...||=+++| +|.. ..+.-....+.+.+..+
T Consensus 217 Akar~~DvvliDTAGRLhn---k~nLM~EL~KI~rV~~k~~~~ap~e~llv--lDAt-tGqnal~QAk~F~eav~----- 285 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHN---KKNLMDELKKIVRVIKKDDPDAPHEILLV--LDAT-TGQNALSQAKIFNEAVG----- 285 (340)
T ss_pred HHHcCCCEEEEeCcccccC---chhHHHHHHHHHHHhccccCCCCceEEEE--EEcc-cChhHHHHHHHHHHhcC-----
Confidence 1124567999999997432 334444454432 1 2346778999 4432 23445555666666654
Q ss_pred cEEEEEeCCCCC
Q 026113 156 RALIVLTHAQLS 167 (243)
Q Consensus 156 ~~ivV~tk~D~~ 167 (243)
-.=+|+||+|..
T Consensus 286 l~GiIlTKlDgt 297 (340)
T COG0552 286 LDGIILTKLDGT 297 (340)
T ss_pred CceEEEEecccC
Confidence 456889999965
No 379
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.00035 Score=56.71 Aligned_cols=120 Identities=13% Similarity=0.138 Sum_probs=64.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~ 119 (243)
.+|+++|-..+||||+-...+..-.....-+-..|...........-.++.+||.||+.+.-...-.....+ .+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF------~~ 101 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIF------RG 101 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHH------hc
Confidence 569999999999999877666442111111111111111111111234789999999876533221222233 37
Q ss_pred CcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 120 IDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 120 ~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.-++++| +|... ..+...+....+.....-+...++=+.+-|.|..
T Consensus 102 ~gALifv--IDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGL 148 (347)
T KOG3887|consen 102 VGALIFV--IDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGL 148 (347)
T ss_pred cCeEEEE--EechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence 8899999 44321 2222233333333333334445677788888876
No 380
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.47 E-value=0.00061 Score=49.44 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
+||+++|..|+|||+++..+....
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~ 24 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFP 24 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCC
Confidence 489999999999999999985443
No 381
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.0011 Score=61.56 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=65.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeE--EEEe----------------eeCCeEEEEEeCCCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV--MVSR----------------SRAGFTLNIVDTPGLIE 99 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~--~~~~----------------~~~~~~~~viDTPG~~~ 99 (243)
+..-+.++|...+|||-|+..|.+.++..... .+.|.... .... .+.--.+.+|||||..
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegea-ggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE- 551 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEA-GGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE- 551 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccc-cceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch-
Confidence 45678899999999999999999987643222 22222110 0000 0111138899999973
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113 100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (243)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 166 (243)
.+..+++.- ..-+|+.|+|+++-. .+...-..-+..|+.. ..|+||.+||+|.
T Consensus 552 -------sFtnlRsrg-sslC~~aIlvvdImh-GlepqtiESi~lLR~r-----ktpFivALNKiDR 604 (1064)
T KOG1144|consen 552 -------SFTNLRSRG-SSLCDLAILVVDIMH-GLEPQTIESINLLRMR-----KTPFIVALNKIDR 604 (1064)
T ss_pred -------hhhhhhhcc-ccccceEEEEeehhc-cCCcchhHHHHHHHhc-----CCCeEEeehhhhh
Confidence 333344321 135788999965521 1222223334444432 2699999999975
No 382
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.37 E-value=0.0095 Score=44.71 Aligned_cols=100 Identities=15% Similarity=0.220 Sum_probs=54.5
Q ss_pred EEEcCCCCcHHHHHHHHhCC------CcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 43 LVMGKGGVGKSSTVNSIIGE------KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 43 llvG~~g~GKSSlin~llg~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
+.-|+.|+|||++.-.+... .+..+..-+..+. -...+.|+|||+..+ +.....+.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~---------~~yd~VIiD~p~~~~-----~~~~~~l~---- 65 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLAN---------LDYDYIIIDTGAGIS-----DNVLDFFL---- 65 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCC---------CCCCEEEEECCCCCC-----HHHHHHHH----
Confidence 45578999999986554422 1111111111000 016789999998532 22222333
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 166 (243)
.+|.++++...+.... ..-...++.+.+..+ ..++.+|+|+++.
T Consensus 66 --~aD~vviv~~~~~~s~-~~~~~~l~~l~~~~~---~~~~~lVvN~~~~ 109 (139)
T cd02038 66 --AADEVIVVTTPEPTSI-TDAYALIKKLAKQLR---VLNFRVVVNRAES 109 (139)
T ss_pred --hCCeEEEEcCCChhHH-HHHHHHHHHHHHhcC---CCCEEEEEeCCCC
Confidence 7899999955553221 112344555554322 2578899999863
No 383
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.35 E-value=0.0014 Score=48.05 Aligned_cols=101 Identities=17% Similarity=0.282 Sum_probs=54.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHHhcCC
Q 026113 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV--NYHAIQLIKRFLLNKT 119 (243)
Q Consensus 42 IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~--~~~~~~~~~~~~~~~~ 119 (243)
|++.|++|+|||+++..+...- +.++.-+|.+-+.+.... .......+.+... ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------------------~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 57 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------------------GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKK-SA 57 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------------------TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHH-TS
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------------------ccccccccccccccccccccccccccccccccc-cc
Confidence 6899999999999999988553 122445665555422111 1122222222211 22
Q ss_pred CcEEEEEEeCCCcc------cChhHHHHHHHHHHHhccccc--ccEEEEEeCCC
Q 026113 120 IDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIW--KRALIVLTHAQ 165 (243)
Q Consensus 120 ~~~il~v~~~d~~~------~~~~~~~~l~~l~~~~~~~~~--~~~ivV~tk~D 165 (243)
...||++..+|... ........+..+...+..... .++++|+|-.+
T Consensus 58 ~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred cceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 25888887776321 112234555566555553322 34677766554
No 384
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.33 E-value=0.00065 Score=42.56 Aligned_cols=45 Identities=16% Similarity=0.176 Sum_probs=30.8
Q ss_pred CCCcEEEEEEeCCCccc--ChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113 118 KTIDVLLYVDRLDVYRV--DNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~--~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 165 (243)
.-+++|+|++++...+- -+.+...++.++..|++ +|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~---~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN---KPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT---S-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC---CCEEEEEeccC
Confidence 45789999988876652 34567788889999874 79999999998
No 385
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.29 E-value=0.0033 Score=57.01 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=64.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
+-+++.++|..++|||.++++++|+.... +...+.............| .-+.+-|.+-. +.....+.
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~k--------- 492 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSK--------- 492 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCc---------
Confidence 45899999999999999999999987543 2222222211121222222 24555554443 22222211
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+..+|++.++++....+. ...+..+...+-..-..|+++|.+|+|+-
T Consensus 493 -e~~cDv~~~~YDsS~p~s----f~~~a~v~~~~~~~~~~Pc~~va~K~dlD 539 (625)
T KOG1707|consen 493 -EAACDVACLVYDSSNPRS----FEYLAEVYNKYFDLYKIPCLMVATKADLD 539 (625)
T ss_pred -cceeeeEEEecccCCchH----HHHHHHHHHHhhhccCCceEEEeeccccc
Confidence 026799999977653322 22222332222222347999999999984
No 386
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.25 E-value=0.013 Score=46.08 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.-.++++|++|+|||||++.|.|..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 4578999999999999999999975
No 387
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=97.23 E-value=0.0021 Score=55.03 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
....++++||++.+||||+...|++.
T Consensus 101 ~~GPrv~vVGp~d~GKsTl~r~L~ny 126 (415)
T KOG2749|consen 101 SYGPRVMVVGPTDVGKSTLCRILLNY 126 (415)
T ss_pred ccCCEEEEECCCccchHHHHHHHHHH
Confidence 34689999999999999999888854
No 388
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.21 E-value=0.0048 Score=50.59 Aligned_cols=29 Identities=31% Similarity=0.535 Sum_probs=25.1
Q ss_pred cCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 35 ~~~~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.+...-++++-|..|+||||++.+++..-
T Consensus 48 ~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 48 QGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred cCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 34577899999999999999999999653
No 389
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=97.12 E-value=8.1e-06 Score=63.29 Aligned_cols=118 Identities=13% Similarity=0.088 Sum_probs=71.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe---EEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF---TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
++++++|.-|+||+|++...+........ ..............|++. .+.+||.+|++..+.+. ++.
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~y-RAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mt---------rVy 95 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHY-RATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMT---------RVY 95 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHH-HHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceE---------EEE
Confidence 78999999999999999988866521111 011111222223345543 57899999996443322 122
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHH--hcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDN--FGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~--~~~~~~~~~ivV~tk~D~~ 167 (243)
...+|+..+|+++..+.-.+...+|.+.+-.. +..+...|++++.||||..
T Consensus 96 ykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e 148 (229)
T KOG4423|consen 96 YKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQE 148 (229)
T ss_pred ecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccC
Confidence 35889999997776543223334444443221 2233346899999999974
No 390
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.10 E-value=0.014 Score=41.73 Aligned_cols=94 Identities=16% Similarity=0.192 Sum_probs=49.9
Q ss_pred EcCCCCcHHHHHHHHhCC-------CcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 45 MGKGGVGKSSTVNSIIGE-------KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 45 vG~~g~GKSSlin~llg~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
-++.|+||||+.-.|... ++......+.. +-.+.++|||+..+. .....+
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~------------~~D~IIiDtpp~~~~-----~~~~~l------ 62 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF------------GDDYVVVDLGRSLDE-----VSLAAL------ 62 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC------------CCCEEEEeCCCCcCH-----HHHHHH------
Confidence 356999999976554422 21111111111 117899999997432 222223
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 163 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk 163 (243)
..+|.++++...+.... ..-..+++.+.+. +.....++.+|+|+
T Consensus 63 ~~aD~vlvvv~~~~~s~-~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 63 DQADRVFLVTQQDLPSI-RNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred HHcCeEEEEecCChHHH-HHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 27799999966654322 2233445555443 21112467788875
No 391
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.05 E-value=0.0004 Score=54.30 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=32.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEe
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVD 93 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viD 93 (243)
..-+++.|++|+||||++..|+... ...-..+.+|..+ ..++.+|+.+.+++
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~p--R~gEv~G~dY~Fvs 55 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKP--RPGEVDGVDYFFVT 55 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCC--CCCCcCCceeEeCC
Confidence 4668999999999999999999776 2222222233322 23445565555544
No 392
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.05 E-value=0.01 Score=41.89 Aligned_cols=71 Identities=25% Similarity=0.367 Sum_probs=38.6
Q ss_pred EEEEc-CCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113 42 ILVMG-KGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (243)
Q Consensus 42 IllvG-~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 120 (243)
|++.| +.|+||||+.-.+...-. . . .......... ....+.++|||+..+. .....+. .+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~-~-~-----~~~vl~~d~d-~~~d~viiD~p~~~~~-----~~~~~l~------~a 62 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALA-R-R-----GKRVLLIDLD-PQYDYIIIDTPPSLGL-----LTRNALA------AA 62 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH-h-C-----CCcEEEEeCC-CCCCEEEEeCcCCCCH-----HHHHHHH------HC
Confidence 55666 689999998766542211 0 0 0000011111 1156899999997532 2222332 67
Q ss_pred cEEEEEEeCCC
Q 026113 121 DVLLYVDRLDV 131 (243)
Q Consensus 121 ~~il~v~~~d~ 131 (243)
|.++++.+.+.
T Consensus 63 d~viv~~~~~~ 73 (104)
T cd02042 63 DLVLIPVQPSP 73 (104)
T ss_pred CEEEEeccCCH
Confidence 99999955543
No 393
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0025 Score=54.99 Aligned_cols=134 Identities=12% Similarity=0.072 Sum_probs=75.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccccc------------CC-CCCCCeeEEEE----------e------------
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVS------------TF-QSEGPRPVMVS----------R------------ 82 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~------------~~-~~~t~~~~~~~----------~------------ 82 (243)
-++|++++|...+|||||.-.|+....-... .. .+.|. +.... .
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTS-sis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTS-SISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCccc-ccchhcccccccccccchhhcccHHHHH
Confidence 4689999999999999998887744221100 00 01111 11000 0
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEe
Q 026113 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162 (243)
Q Consensus 83 ~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~t 162 (243)
+....-++++|.+|........ ..-+....||..++|++.+. ..+...++-+..+..+ ..|+.+++|
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TT-------i~gLtgY~Ph~A~LvVsA~~-Gi~~tTrEHLgl~~AL-----~iPfFvlvt 311 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTT-------IHGLTGYTPHFACLVVSADR-GITWTTREHLGLIAAL-----NIPFFVLVT 311 (591)
T ss_pred hhhcceEEEeecccchhhheee-------eeecccCCCceEEEEEEcCC-CCccccHHHHHHHHHh-----CCCeEEEEE
Confidence 0112348899999974221111 11123357899999988774 2444455555555554 269999999
Q ss_pred CCCCCCCCCCCHHHHHHhhhHHHHHHHcc
Q 026113 163 HAQLSLPDRLDYEVFCSKRSEALLKFVSP 191 (243)
Q Consensus 163 k~D~~~~~~~~~~~~~~~~~~~l~~~i~~ 191 (243)
|+|+.++. .++.. -+.+.+++.+
T Consensus 312 K~Dl~~~~--~~~~t----v~~l~nll~~ 334 (591)
T KOG1143|consen 312 KMDLVDRQ--GLKKT----VKDLSNLLAK 334 (591)
T ss_pred eeccccch--hHHHH----HHHHHHHHhh
Confidence 99997442 23333 3345555554
No 394
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.01 E-value=0.018 Score=44.66 Aligned_cols=64 Identities=17% Similarity=0.221 Sum_probs=37.6
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 88 ~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.+.|+|||+..+. .....+ ..+|.++++...+..... .-..+++.+.+. + .....+|+|+.+..
T Consensus 64 d~viiD~p~~~~~-----~~~~~l------~~ad~viiv~~~~~~s~~-~~~~~~~~~~~~-~---~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIER-----GFITAI------APADEALLVTTPEISSLR-DADRVKGLLEAL-G---IKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcH-----HHHHHH------HhCCcEEEEeCCCcchHH-HHHHHHHHHHHc-C---CceEEEEEeCCccc
Confidence 6999999986422 222223 277889999666543222 223345555442 1 14678999999753
No 395
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.01 E-value=0.00072 Score=43.31 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 026113 41 TILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~ll 60 (243)
..++.|++|+||||++.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998765
No 396
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.00 E-value=0.017 Score=39.54 Aligned_cols=69 Identities=25% Similarity=0.352 Sum_probs=40.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCc
Q 026113 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 121 (243)
Q Consensus 42 IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (243)
+++.|..|+|||++...+...-.. . .... .. .+ .+.++|+|+..+..... ..... ..+|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~--~-----g~~v--~~--~~--d~iivD~~~~~~~~~~~--~~~~~------~~~~ 60 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK--R-----GKRV--LL--ID--DYVLIDTPPGLGLLVLL--CLLAL------LAAD 60 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--C-----CCeE--EE--EC--CEEEEeCCCCccchhhh--hhhhh------hhCC
Confidence 678899999999998887643210 0 0000 11 11 78999999986432110 01111 3778
Q ss_pred EEEEEEeCCC
Q 026113 122 VLLYVDRLDV 131 (243)
Q Consensus 122 ~il~v~~~d~ 131 (243)
.++++...+.
T Consensus 61 ~vi~v~~~~~ 70 (99)
T cd01983 61 LVIIVTTPEA 70 (99)
T ss_pred EEEEecCCch
Confidence 8888855543
No 397
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.00 E-value=0.0012 Score=53.53 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=16.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 026113 40 LTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~ll 60 (243)
+-.+++|++|+||||..+.+.
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred cceEEEcCCCCCccchhhhHH
Confidence 446899999999999876654
No 398
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.99 E-value=0.001 Score=52.65 Aligned_cols=26 Identities=19% Similarity=0.417 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
++.-|+|+|++|+|||||++.|+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45679999999999999999998764
No 399
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.99 E-value=0.0053 Score=53.07 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
...+|++.|.+|+||||++|+|+..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ 183 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALRE 183 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhh
Confidence 4689999999999999999999865
No 400
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.95 E-value=0.0017 Score=51.76 Aligned_cols=21 Identities=43% Similarity=0.619 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 026113 40 LTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~ll 60 (243)
.-++++|+.|+||||..+++.
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~ 24 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMY 24 (273)
T ss_pred eeEEEEccCCCCcchHHHHHH
Confidence 457899999999999998886
No 401
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.95 E-value=0.0031 Score=54.98 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=21.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
...+.+++++|..++|||||..-|++.
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHH
Confidence 346789999999999999976655543
No 402
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.93 E-value=0.012 Score=51.10 Aligned_cols=119 Identities=19% Similarity=0.126 Sum_probs=66.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccC--------C-----CCCCCee--EEEE--------------------
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST--------F-----QSEGPRP--VMVS-------------------- 81 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~--------~-----~~~t~~~--~~~~-------------------- 81 (243)
...+.+...|....|||||.-+|.-.+.-.... . .+.+.+. ..+.
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 456889999999999999987766322111000 0 0001110 0000
Q ss_pred -eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEE
Q 026113 82 -RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV 160 (243)
Q Consensus 82 -~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV 160 (243)
....++-+.++||-|.. -+++..-+-+....+|-.++++-+|. -.+..-++-+-.+... ..|+++|
T Consensus 195 vv~~aDklVsfVDtvGHE-------pwLrTtirGL~gqk~dYglLvVaAdd-G~~~~tkEHLgi~~a~-----~lPviVv 261 (527)
T COG5258 195 VVKRADKLVSFVDTVGHE-------PWLRTTIRGLLGQKVDYGLLVVAADD-GVTKMTKEHLGIALAM-----ELPVIVV 261 (527)
T ss_pred hhhhcccEEEEEecCCcc-------HHHHHHHHHHhccccceEEEEEEccC-CcchhhhHhhhhhhhh-----cCCEEEE
Confidence 01123448899999983 33333333334468899999977764 2333333333222222 2599999
Q ss_pred EeCCCCCC
Q 026113 161 LTHAQLSL 168 (243)
Q Consensus 161 ~tk~D~~~ 168 (243)
+||+|+.+
T Consensus 262 vTK~D~~~ 269 (527)
T COG5258 262 VTKIDMVP 269 (527)
T ss_pred EEecccCc
Confidence 99999973
No 403
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.91 E-value=0.00064 Score=53.19 Aligned_cols=23 Identities=39% Similarity=0.710 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~ 63 (243)
.|+++|++|+||||+++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 58999999999999999999864
No 404
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.91 E-value=0.013 Score=43.09 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
....+++.|++|+|||++++.+...-
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999988664
No 405
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.0018 Score=56.31 Aligned_cols=140 Identities=13% Similarity=0.087 Sum_probs=76.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcc------------------------------cccCCCCCCCeeEEEEeeeCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAV------------------------------TVSTFQSEGPRPVMVSRSRAG 86 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~ 86 (243)
+.+++++++|..-+||||+...|+...-. ......+.|........+...
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 57899999999999999998887744100 000011112222233445566
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcc----cCh-hHHHHHHHHHHHhcccccccEEEEE
Q 026113 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR----VDN-LDKQITRAITDNFGEQIWKRALIVL 161 (243)
Q Consensus 87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~----~~~-~~~~~l~~l~~~~~~~~~~~~ivV~ 161 (243)
+.+.+.|+||.-.. -.+.+.-. .++|+-++|+++-... +.. .+.+--..+.+..|. .+.|+++
T Consensus 157 ~~ftiLDApGHk~f---v~nmI~Ga------sqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv---~~lVv~v 224 (501)
T KOG0459|consen 157 KRFTILDAPGHKSF---VPNMIGGA------SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV---KHLIVLI 224 (501)
T ss_pred eeEEeeccCccccc---chhhcccc------chhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhcc---ceEEEEE
Confidence 78999999998322 22211111 2566666664431100 111 122223344455553 6899999
Q ss_pred eCCCCCCCCCCCHHHHHHhhhHHHHHHHc
Q 026113 162 THAQLSLPDRLDYEVFCSKRSEALLKFVS 190 (243)
Q Consensus 162 tk~D~~~~~~~~~~~~~~~~~~~l~~~i~ 190 (243)
||+|.. ..+++.+.|-+. .+.+..+++
T Consensus 225 NKMddP-tvnWs~eRy~E~-~~k~~~fLr 251 (501)
T KOG0459|consen 225 NKMDDP-TVNWSNERYEEC-KEKLQPFLR 251 (501)
T ss_pred EeccCC-ccCcchhhHHHH-HHHHHHHHH
Confidence 999853 344554544333 445555555
No 406
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.91 E-value=0.024 Score=42.77 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3467899999999999999999985
No 407
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.90 E-value=0.00084 Score=49.98 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKA 64 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~ 64 (243)
=.++++|++|+|||||++.|+|...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 4789999999999999999999864
No 408
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.014 Score=44.78 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~ll 60 (243)
..+||.+.|++|+||||++..+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHH
Confidence 57899999999999999987766
No 409
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.89 E-value=0.0013 Score=49.31 Aligned_cols=21 Identities=38% Similarity=0.724 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 026113 42 ILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 42 IllvG~~g~GKSSlin~llg~ 62 (243)
|+++|++|+||||+++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999976
No 410
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.85 E-value=0.00089 Score=54.76 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCc
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKA 64 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~ 64 (243)
-+.++|++|||||||+|.+.|-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 468899999999999999998864
No 411
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.84 E-value=0.0013 Score=61.70 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKA 64 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~ 64 (243)
.-..|+++|.-++||||.++++.|..+
T Consensus 28 ~lP~I~vvG~QSsGKSSvLE~lvG~~f 54 (657)
T KOG0446|consen 28 PLPQIVVVGGQSSGKSSVLESLVGFVF 54 (657)
T ss_pred cCCceEEecCCCCcchhHHHHhhcccc
Confidence 447899999999999999999999753
No 412
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.83 E-value=0.0016 Score=52.44 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+.-|+++|.+|+|||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5678899999999999999999754
No 413
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.81 E-value=0.022 Score=44.35 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999975
No 414
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.77 E-value=0.0012 Score=51.72 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKA 64 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~ 64 (243)
=++.++|++|+|||||+|.+.|...
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccC
Confidence 4789999999999999999998864
No 415
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=96.76 E-value=0.0011 Score=58.99 Aligned_cols=90 Identities=19% Similarity=0.287 Sum_probs=50.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCC---eeEE-EEeeeCC--eEEEEE-----eCCCCCCCCCCcHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP---RPVM-VSRSRAG--FTLNIV-----DTPGLIEGGYVNYH 106 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~---~~~~-~~~~~~~--~~~~vi-----DTPG~~~~~~~~~~ 106 (243)
+.-++.++|.+|+|||||++.|.+.....+......+. +... ......+ ..-.+| |+||.-. ....
T Consensus 156 ~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~---~~~~ 232 (434)
T PRK08472 156 KGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRK---YGAF 232 (434)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhh---HHHH
Confidence 44589999999999999999999654222111110000 0000 0001112 134566 7888632 1122
Q ss_pred HHHHHHHHHhcCCCcEEEEEEeCC
Q 026113 107 AIQLIKRFLLNKTIDVLLYVDRLD 130 (243)
Q Consensus 107 ~~~~~~~~~~~~~~~~il~v~~~d 130 (243)
..-.+.+|+.+.+-||+|++.++.
T Consensus 233 ~a~~iAEyFrd~G~~Vll~~DslT 256 (434)
T PRK08472 233 CAMSVAEYFKNQGLDVLFIMDSVT 256 (434)
T ss_pred HHHHHHHHHHHcCCCEEEecccch
Confidence 233455666567899999996654
No 416
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.75 E-value=0.0013 Score=47.84 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~ 62 (243)
.|++.|.+||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998754
No 417
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.71 E-value=0.029 Score=49.55 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=30.3
Q ss_pred HHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 27 ELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 27 ~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
++.+.+.++....+-|.+||+..+||||+|..+...
T Consensus 5 ~iykDIa~RT~GdIYiGVVGPVRTGKSTFIKRFMel 40 (492)
T PF09547_consen 5 DIYKDIAERTGGDIYIGVVGPVRTGKSTFIKRFMEL 40 (492)
T ss_pred hHHHHHHHhcCCceEEEeecCcccCchhHHHHHHHH
Confidence 355667777778999999999999999999998743
No 418
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.71 E-value=0.0033 Score=51.38 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=27.0
Q ss_pred HhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 30 GKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 30 ~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
........++.-|.+.|.+|+|||||++.|.+.-
T Consensus 24 ~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 24 AALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3333444578999999999999999999988653
No 419
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.67 E-value=0.0022 Score=51.29 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
+.-.|+++|.+|+|||||++.|.+..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34679999999999999999998764
No 420
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.66 E-value=0.0017 Score=53.37 Aligned_cols=26 Identities=23% Similarity=0.572 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
..++|++++|++|+|||+|+-.|+..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999888854
No 421
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.66 E-value=0.0015 Score=53.00 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCc
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKA 64 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~ 64 (243)
-++++|++|||||||+|.+-+-+.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 578999999999999999988764
No 422
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=96.65 E-value=0.0032 Score=53.88 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
...+|++.|.||+|||||+|++++.-
T Consensus 172 ~r~NILisGGTGSGKTTlLNal~~~i 197 (355)
T COG4962 172 IRCNILISGGTGSGKTTLLNALSGFI 197 (355)
T ss_pred hceeEEEeCCCCCCHHHHHHHHHhcC
Confidence 34899999999999999999999875
No 423
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=96.65 E-value=0.023 Score=48.69 Aligned_cols=137 Identities=12% Similarity=0.146 Sum_probs=78.5
Q ss_pred cCCCceEEEEEcCCCCcHHHHHHHHhCC------Cccc----ccC-----CCCCCCeeEEEEeeeCCeEEEEEeCCCCCC
Q 026113 35 ENVNTLTILVMGKGGVGKSSTVNSIIGE------KAVT----VST-----FQSEGPRPVMVSRSRAGFTLNIVDTPGLIE 99 (243)
Q Consensus 35 ~~~~~~~IllvG~~g~GKSSlin~llg~------~~~~----~~~-----~~~~t~~~~~~~~~~~~~~~~viDTPG~~~ 99 (243)
..+..++|.-+|...-|||||..+|+.- ..+. ... -.+.|........+...+.+-=+|+||.-|
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 4557799999999999999999888722 1111 011 111222222233445667888899999842
Q ss_pred CCCCcHHHHHHHHHHHh-cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHH
Q 026113 100 GGYVNYHAIQLIKRFLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFC 178 (243)
Q Consensus 100 ~~~~~~~~~~~~~~~~~-~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~ 178 (243)
++++.+. ...-|+.++|+....-...+ -++-+ .+.+..|- +++++.+||.|+.+ +.+.-+.+
T Consensus 130 ----------YIKNMItGaaqMDGaILVVaatDG~MPQ-TrEHl-LLArQVGV---~~ivvfiNKvD~V~--d~e~leLV 192 (449)
T KOG0460|consen 130 ----------YIKNMITGAAQMDGAILVVAATDGPMPQ-TREHL-LLARQVGV---KHIVVFINKVDLVD--DPEMLELV 192 (449)
T ss_pred ----------HHHHhhcCccccCceEEEEEcCCCCCcc-hHHHH-HHHHHcCC---ceEEEEEecccccC--CHHHHHHH
Confidence 3343332 13457778886654322222 22222 44555554 68999999999862 22233333
Q ss_pred HhhhHHHHHHHcc
Q 026113 179 SKRSEALLKFVSP 191 (243)
Q Consensus 179 ~~~~~~l~~~i~~ 191 (243)
.-++++++..
T Consensus 193 ---EmE~RElLse 202 (449)
T KOG0460|consen 193 ---EMEIRELLSE 202 (449)
T ss_pred ---HHHHHHHHHH
Confidence 3355555543
No 424
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.64 E-value=0.003 Score=54.77 Aligned_cols=26 Identities=31% Similarity=0.554 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
...+|++.|.+|+||||++|+|++.-
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHccc
Confidence 56899999999999999999999763
No 425
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.64 E-value=0.0024 Score=50.52 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.-.++++|++|+||||++++|++.-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5689999999999999999999764
No 426
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.0071 Score=56.52 Aligned_cols=114 Identities=15% Similarity=0.195 Sum_probs=64.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC---------------CCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS---------------EGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~---------------~t~~~~~~~~~~~~~~~~viDTPG~~~~~~ 102 (243)
.--+|.++....-|||||+.+|+..+........+ .|...........+..+.+||+||..|...
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s 87 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS 87 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhh
Confidence 34678889999999999999998664322222111 111111112233567899999999977643
Q ss_pred CcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (243)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 166 (243)
.- .... .-.|..++.+++.. ...-++...+++..-++ ...++|+||+|.
T Consensus 88 ev---ssas------~l~d~alvlvdvve----gv~~qt~~vlrq~~~~~--~~~~lvinkidr 136 (887)
T KOG0467|consen 88 EV---SSAS------RLSDGALVLVDVVE----GVCSQTYAVLRQAWIEG--LKPILVINKIDR 136 (887)
T ss_pred hh---hhhh------hhcCCcEEEEeecc----ccchhHHHHHHHHHHcc--CceEEEEehhhh
Confidence 22 1111 13455555544432 11223333444443332 478999999994
No 427
>PRK07261 topology modulation protein; Provisional
Probab=96.63 E-value=0.0017 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~ 62 (243)
+|+++|.+|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999987643
No 428
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=96.55 E-value=0.0079 Score=50.23 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=41.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc-ccccC-CCCCCCeeEEEEe---eeCCeEEEEEeCCCCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKA-VTVST-FQSEGPRPVMVSR---SRAGFTLNIVDTPGLIEG 100 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~-~~~~~-~~~~t~~~~~~~~---~~~~~~~~viDTPG~~~~ 100 (243)
+-.-|.++|...+|||.|+|.|++... +..+. ..++|........ ...+..+.++||.|+++.
T Consensus 20 ~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~ 87 (260)
T PF02263_consen 20 PVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV 87 (260)
T ss_dssp BEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred CEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence 345678999999999999999998642 23332 2233433222221 224568999999999884
No 429
>PRK08118 topology modulation protein; Reviewed
Probab=96.52 E-value=0.0023 Score=49.73 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~ 62 (243)
-+|+++|.+|+||||+...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999887744
No 430
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.51 E-value=0.0023 Score=51.40 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999975
No 431
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=96.49 E-value=0.0012 Score=57.57 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=69.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccc-----ccC------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVT-----VST------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~-----~~~------------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~ 102 (243)
-+|.++..-.+||||....|+-..-+. +.. ..+.|.........|.|..+.+|||||..|...
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 478888899999999988877321111 111 112222333345678999999999999977654
Q ss_pred CcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.- .+.++ -.|+++.|++... .-+.+.+..+++. ..+..|.+..+||+|..
T Consensus 118 ev---erclr------vldgavav~dasa----gve~qtltvwrqa--dk~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 118 EV---ERCLR------VLDGAVAVFDASA----GVEAQTLTVWRQA--DKFKIPAHCFINKMDKL 167 (753)
T ss_pred EH---HHHHH------HhcCeEEEEeccC----Ccccceeeeehhc--cccCCchhhhhhhhhhh
Confidence 32 22333 5578888855432 1223333333332 23346899999999975
No 432
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.49 E-value=0.0021 Score=55.28 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCc
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKA 64 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~ 64 (243)
-++++|++|||||||++.|.|-..
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 467889999999999999998763
No 433
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.49 E-value=0.0024 Score=50.09 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg 61 (243)
+.-.++++|++|+|||||++.+++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 446889999999999999999974
No 434
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.47 E-value=0.0025 Score=52.18 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999875
No 435
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.45 E-value=0.0026 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~ 62 (243)
.||+++|.+||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998866
No 436
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.44 E-value=0.0027 Score=51.12 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999975
No 437
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.43 E-value=0.0028 Score=51.24 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3478999999999999999999975
No 438
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.43 E-value=0.0028 Score=51.17 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999975
No 439
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.42 E-value=0.0029 Score=49.98 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~ 63 (243)
.++|+|++|+||||+++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999997653
No 440
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.42 E-value=0.003 Score=50.80 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
++..|.+.|.+|+|||||++.|.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999998864
No 441
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.41 E-value=0.0029 Score=51.24 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568999999999999999999974
No 442
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.41 E-value=0.003 Score=49.97 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|..
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999875
No 443
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.41 E-value=0.029 Score=48.27 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=63.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC----ccc-ccCCC-----------CC-------CCeeEEEEee-------------eC
Q 026113 42 ILVMGKGGVGKSSTVNSIIGEK----AVT-VSTFQ-----------SE-------GPRPVMVSRS-------------RA 85 (243)
Q Consensus 42 IllvG~~g~GKSSlin~llg~~----~~~-~~~~~-----------~~-------t~~~~~~~~~-------------~~ 85 (243)
.++.|-=|||||||+|.|+... ++. +..+. .. +..|..|... ..
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 4778999999999999999552 111 11110 01 1123333311 22
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHH-HHH-hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeC
Q 026113 86 GFTLNIVDTPGLIEGGYVNYHAIQLIK-RFL-LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 163 (243)
Q Consensus 86 ~~~~~viDTPG~~~~~~~~~~~~~~~~-~~~-~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk 163 (243)
+....+|.|-|+.++...- ..... ..+ .....|.++-| +|..++........+.+.+... --=++|+||
T Consensus 84 ~~D~ivIEtTGlA~P~pv~---~t~~~~~~l~~~~~ld~vvtv--VDa~~~~~~~~~~~~~~~~Qia----~AD~ivlNK 154 (323)
T COG0523 84 RPDRLVIETTGLADPAPVI---QTFLTDPELADGVRLDGVVTV--VDAAHFLEGLDAIAELAEDQLA----FADVIVLNK 154 (323)
T ss_pred CCCEEEEeCCCCCCCHHHH---HHhccccccccceeeceEEEE--EeHHHhhhhHHHHHHHHHHHHH----hCcEEEEec
Confidence 3468899999997662111 11111 011 12356778888 5544443333222233333222 245899999
Q ss_pred CCCCCC
Q 026113 164 AQLSLP 169 (243)
Q Consensus 164 ~D~~~~ 169 (243)
.|+.++
T Consensus 155 ~Dlv~~ 160 (323)
T COG0523 155 TDLVDA 160 (323)
T ss_pred ccCCCH
Confidence 999743
No 444
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.39 E-value=0.003 Score=51.16 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|..
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999975
No 445
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.39 E-value=0.003 Score=50.50 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|..
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999975
No 446
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.38 E-value=0.0031 Score=50.47 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999975
No 447
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.37 E-value=0.0028 Score=47.36 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 026113 42 ILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 42 IllvG~~g~GKSSlin~llg~ 62 (243)
|+++|.+|+||||++..+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998844
No 448
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.37 E-value=0.0029 Score=50.91 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~ 63 (243)
.++++|++|+|||||++.|.|..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999874
No 449
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.37 E-value=0.0032 Score=50.70 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999975
No 450
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.36 E-value=0.073 Score=48.41 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=29.8
Q ss_pred CcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (243)
Q Consensus 120 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 166 (243)
.-.+|+|.++..... ..+...++.+...+-...+.|+|+++|-+..
T Consensus 194 ~~~liLveDLPn~~~-~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~ 239 (634)
T KOG1970|consen 194 DKKLILVEDLPNQFY-RDDSETFREVLRLYVSIGRCPLIFIITDSLS 239 (634)
T ss_pred CceEEEeeccchhhh-hhhHHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 445688866643222 2255666666666666777899999998754
No 451
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.35 E-value=0.003 Score=52.13 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~ 62 (243)
=-+.++|+.|+|||||+.+++|-
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999994
No 452
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.35 E-value=0.0033 Score=50.58 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478899999999999999999975
No 453
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.34 E-value=0.0033 Score=45.03 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 026113 40 LTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~ll 60 (243)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 568999999999999999976
No 454
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.33 E-value=0.0033 Score=51.19 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4578999999999999999999875
No 455
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.32 E-value=0.003 Score=49.42 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~ 62 (243)
.++++|.+||||||+++.|.+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999998764
No 456
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.32 E-value=0.0036 Score=50.30 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999975
No 457
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.31 E-value=0.0032 Score=49.89 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=-++++|++|||||||+|.+.|.-
T Consensus 31 ge~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 31 GELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred CCEEEEEcCCCccHHHHHHHHhcCc
Confidence 3467888999999999999999875
No 458
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.31 E-value=0.086 Score=44.67 Aligned_cols=113 Identities=13% Similarity=0.125 Sum_probs=61.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc------------
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN------------ 104 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~------------ 104 (243)
.....++++|++|.|||+++..+....... .+ + . ....+|.++.+|.-.+.....
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d-~--~---------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SD-E--D---------AERIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHCCCC-CC-C--C---------CccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 355789999999999999999988655211 10 0 0 112367788887765421111
Q ss_pred -----HHHHHHHHHHHhcCCCcEEEEEEeCCC-cc-cChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113 105 -----YHAIQLIKRFLLNKTIDVLLYVDRLDV-YR-VDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (243)
Q Consensus 105 -----~~~~~~~~~~~~~~~~~~il~v~~~d~-~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 164 (243)
.+........+..-++-++++= -+.. .. .....+.++..++. +|++...|+|.|+|.-
T Consensus 126 ~~~~~~~~~~~~~~llr~~~vrmLIID-E~H~lLaGs~~~qr~~Ln~LK~-L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 126 PRDRVAKLEQQVLRLLRRLGVRMLIID-EFHNLLAGSYRKQREFLNALKF-LGNELQIPIVGVGTRE 190 (302)
T ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEee-chHHHhcccHHHHHHHHHHHHH-HhhccCCCeEEeccHH
Confidence 1111111222222344433321 1211 01 12335556655555 4777778999999874
No 459
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.30 E-value=0.014 Score=49.79 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
....|++.|.+|+||||++++|++.
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~ 155 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAE 155 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999865
No 460
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.30 E-value=0.0036 Score=51.49 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3478999999999999999999875
No 461
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.29 E-value=0.004 Score=48.10 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999999985
No 462
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.29 E-value=0.0039 Score=48.82 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.+.++|++|+|||||++.|.|..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4577899999999999999999875
No 463
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.29 E-value=0.0037 Score=50.52 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|+|..
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3467899999999999999999975
No 464
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.29 E-value=0.0037 Score=51.08 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999885
No 465
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.29 E-value=0.0038 Score=50.58 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478899999999999999999985
No 466
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.28 E-value=0.0036 Score=50.10 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~ 62 (243)
|++|.++|..|+|||||++.+++.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999999988864
No 467
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.28 E-value=0.0039 Score=50.12 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
+..-|.++|.+|+|||||++.|.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999864
No 468
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.28 E-value=0.0037 Score=50.59 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999875
No 469
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.28 E-value=0.0038 Score=50.18 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999975
No 470
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.27 E-value=0.0038 Score=50.92 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999875
No 471
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.27 E-value=0.0039 Score=50.43 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999975
No 472
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.26 E-value=0.0032 Score=50.28 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~ 63 (243)
-|+++|++|+||||+++++++.-
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999988654
No 473
>PRK06217 hypothetical protein; Validated
Probab=96.26 E-value=0.0038 Score=49.15 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+|+|+|.+|+||||+...|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999987743
No 474
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.26 E-value=0.004 Score=50.31 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|.+|+|||||++.|.|..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3578999999999999999999975
No 475
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.25 E-value=0.0038 Score=50.25 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3468999999999999999999975
No 476
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.25 E-value=0.0039 Score=51.83 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999975
No 477
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.25 E-value=0.004 Score=50.94 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|..
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999974
No 478
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.24 E-value=0.0045 Score=40.54 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 026113 42 ILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 42 IllvG~~g~GKSSlin~llg~ 62 (243)
|++.|.+|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999988754
No 479
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.24 E-value=0.0042 Score=49.45 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|+|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999975
No 480
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.24 E-value=0.0032 Score=48.53 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~ 62 (243)
||+++|..|+|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999998855
No 481
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.24 E-value=0.0042 Score=49.38 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|.+|+|||||++.|.|..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999975
No 482
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.23 E-value=0.0041 Score=51.01 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3478999999999999999999875
No 483
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.22 E-value=0.021 Score=44.64 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~ 62 (243)
..-+.++|.+|+|||||+..+...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 456899999999999999998855
No 484
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0039 Score=56.70 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKA 64 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~ 64 (243)
-+++++|.+|+|||||+|.|+|...
T Consensus 348 ~~talvG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 348 QLTALVGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC
Confidence 4899999999999999999999864
No 485
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.21 E-value=0.0044 Score=49.77 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
+.=.++++|++|+|||||++.|.|..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999975
No 486
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.21 E-value=0.0043 Score=50.43 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
+.=.++++|++|+|||||++.|.|..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999975
No 487
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.21 E-value=0.0044 Score=49.69 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4577899999999999999999975
No 488
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.20 E-value=0.0045 Score=49.46 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
+.-.+.++|++|+|||||++.|.|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34588999999999999999999875
No 489
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.20 E-value=0.0043 Score=50.97 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.=.++++|++|+|||||++.|.|.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 26 GEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999999997
No 490
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.19 E-value=0.0046 Score=49.34 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
+.=.++++|++|+|||||++.|.|..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999999975
No 491
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.19 E-value=0.0046 Score=49.75 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999975
No 492
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.18 E-value=0.0043 Score=50.74 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3468999999999999999999874
No 493
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.18 E-value=0.0048 Score=47.78 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
+.=.++++|.+|+|||||++.|+|..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999999985
No 494
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.18 E-value=0.0048 Score=48.41 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
+.=.++++|++|+|||||++.|.|..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999975
No 495
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.18 E-value=0.0078 Score=46.88 Aligned_cols=28 Identities=21% Similarity=0.500 Sum_probs=17.9
Q ss_pred cCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 35 ENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 35 ~~~~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
....+-.+++.|.+|+|||++++.+...
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3346788999999999999999987754
No 496
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.18 E-value=0.0046 Score=49.94 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999975
No 497
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.17 E-value=0.0047 Score=50.64 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4578899999999999999999875
No 498
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.17 E-value=0.0044 Score=51.33 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.=.++++|++|+|||||++.|.|.
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 32 NQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999986
No 499
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.17 E-value=0.0048 Score=48.49 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999985
No 500
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.17 E-value=0.0055 Score=44.75 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.-.++++|++|+|||+++..+...-
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 3578999999999999999998764
Done!