Query 026113
Match_columns 243
No_of_seqs 190 out of 2281
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 05:55:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3def_A T7I23.11 protein; chlor 100.0 1.3E-33 4.5E-38 234.6 20.6 231 7-239 4-234 (262)
2 1h65_A Chloroplast outer envel 100.0 3.6E-33 1.2E-37 232.9 22.0 231 3-236 1-233 (270)
3 3lxx_A GTPase IMAP family memb 99.9 2.7E-24 9.3E-29 175.8 16.9 184 37-225 27-228 (239)
4 3lxw_A GTPase IMAP family memb 99.9 1.2E-23 4.2E-28 173.0 15.2 184 37-225 19-222 (247)
5 2xtp_A GTPase IMAP family memb 99.8 4.3E-19 1.5E-23 146.5 19.1 151 37-192 20-175 (260)
6 1wf3_A GTP-binding protein; GT 99.8 2.8E-17 9.7E-22 138.7 16.4 124 38-167 6-130 (301)
7 4dhe_A Probable GTP-binding pr 99.8 1.7E-17 5.9E-22 133.3 14.3 124 38-167 28-157 (223)
8 2gj8_A MNME, tRNA modification 99.8 1.5E-17 5.2E-22 128.9 13.5 125 38-167 3-128 (172)
9 2dyk_A GTP-binding protein; GT 99.7 4.5E-17 1.5E-21 123.8 15.0 120 40-167 2-121 (161)
10 3t5d_A Septin-7; GTP-binding p 99.7 2.5E-17 8.5E-22 137.2 14.2 124 38-167 7-157 (274)
11 2qu8_A Putative nucleolar GTP- 99.7 9.3E-17 3.2E-21 129.9 15.5 135 32-172 22-160 (228)
12 4dkx_A RAS-related protein RAB 99.7 6E-17 2.1E-21 130.4 13.3 128 38-177 12-141 (216)
13 3tw8_B RAS-related protein RAB 99.7 1.1E-16 3.9E-21 123.8 13.6 124 37-173 7-132 (181)
14 3iev_A GTP-binding protein ERA 99.7 1.4E-16 4.9E-21 134.8 15.1 123 37-167 8-135 (308)
15 3tkl_A RAS-related protein RAB 99.7 1.8E-16 6.1E-21 124.6 14.2 127 37-175 14-142 (196)
16 2g6b_A RAS-related protein RAB 99.7 1.1E-16 3.8E-21 124.0 12.9 127 37-174 8-136 (180)
17 1u8z_A RAS-related protein RAL 99.7 3.7E-16 1.3E-20 119.2 15.4 126 38-175 3-130 (168)
18 3t5g_A GTP-binding protein RHE 99.7 2.8E-16 9.5E-21 122.0 14.8 126 38-175 5-132 (181)
19 3i8s_A Ferrous iron transport 99.7 1.7E-16 5.9E-21 132.2 14.1 122 38-168 2-126 (274)
20 1kao_A RAP2A; GTP-binding prot 99.7 5.1E-16 1.7E-20 118.3 15.7 124 38-173 2-127 (167)
21 2erx_A GTP-binding protein DI- 99.7 1.6E-16 5.6E-21 121.8 12.9 125 38-173 2-128 (172)
22 4dsu_A GTPase KRAS, isoform 2B 99.7 6E-16 2.1E-20 120.6 16.1 119 37-167 2-122 (189)
23 2nzj_A GTP-binding protein REM 99.7 2E-16 6.8E-21 121.8 13.1 128 38-175 3-132 (175)
24 1mky_A Probable GTP-binding pr 99.7 2.6E-16 8.9E-21 139.5 15.5 120 40-167 2-123 (439)
25 1z2a_A RAS-related protein RAB 99.7 4.6E-16 1.6E-20 118.9 14.9 122 38-172 4-127 (168)
26 2y8e_A RAB-protein 6, GH09086P 99.7 2.1E-16 7.3E-21 122.0 13.0 126 38-175 13-140 (179)
27 1svi_A GTP-binding protein YSX 99.7 6.5E-16 2.2E-20 121.3 15.9 122 38-168 22-148 (195)
28 2a9k_A RAS-related protein RAL 99.7 6.4E-16 2.2E-20 120.1 15.6 126 37-174 16-143 (187)
29 2fn4_A P23, RAS-related protei 99.7 5.8E-16 2E-20 119.7 15.1 125 37-173 7-133 (181)
30 2hxs_A RAB-26, RAS-related pro 99.7 2.4E-16 8.3E-21 121.8 12.9 128 37-174 4-135 (178)
31 1c1y_A RAS-related protein RAP 99.7 2.5E-16 8.4E-21 120.3 12.8 124 38-173 2-127 (167)
32 3kkq_A RAS-related protein M-R 99.7 8.8E-16 3E-20 119.4 16.1 129 35-175 14-144 (183)
33 1z08_A RAS-related protein RAB 99.7 1.7E-16 5.9E-21 121.6 11.9 125 38-174 5-131 (170)
34 2bcg_Y Protein YP2, GTP-bindin 99.7 5.4E-16 1.9E-20 123.1 14.9 126 38-175 7-134 (206)
35 2bov_A RAla, RAS-related prote 99.7 1E-15 3.4E-20 121.2 16.3 128 37-176 12-141 (206)
36 1z0f_A RAB14, member RAS oncog 99.7 6.5E-16 2.2E-20 119.3 14.9 125 38-174 14-140 (179)
37 2hjg_A GTP-binding protein ENG 99.7 1.2E-16 4E-21 141.5 12.1 134 38-177 174-309 (436)
38 3q72_A GTP-binding protein RAD 99.7 2.2E-16 7.4E-21 120.7 11.9 124 39-175 2-127 (166)
39 2wji_A Ferrous iron transport 99.7 6E-16 2.1E-20 118.8 14.2 120 38-167 2-121 (165)
40 2bme_A RAB4A, RAS-related prot 99.7 1.4E-16 4.7E-21 124.2 10.7 126 37-174 8-135 (186)
41 3cph_A RAS-related protein SEC 99.7 6.9E-16 2.4E-20 122.8 15.0 118 38-167 19-138 (213)
42 1z0j_A RAB-22, RAS-related pro 99.7 4.4E-16 1.5E-20 119.2 13.3 122 38-171 5-128 (170)
43 1ek0_A Protein (GTP-binding pr 99.7 4.2E-16 1.4E-20 119.2 13.2 120 38-169 2-123 (170)
44 2efe_B Small GTP-binding prote 99.7 7.3E-16 2.5E-20 119.4 14.6 126 37-174 10-137 (181)
45 2atv_A RERG, RAS-like estrogen 99.7 3.9E-16 1.3E-20 123.1 13.1 125 38-175 27-153 (196)
46 1g16_A RAS-related protein SEC 99.7 5E-16 1.7E-20 118.9 13.4 118 38-167 2-121 (170)
47 3clv_A RAB5 protein, putative; 99.7 8.5E-16 2.9E-20 120.9 14.9 123 38-175 6-167 (208)
48 1z06_A RAS-related protein RAB 99.7 1.1E-15 3.6E-20 119.8 15.3 127 37-173 18-146 (189)
49 3iby_A Ferrous iron transport 99.7 2.8E-16 9.6E-21 129.6 12.5 120 40-168 2-124 (256)
50 2il1_A RAB12; G-protein, GDP, 99.7 3.8E-16 1.3E-20 122.9 12.8 125 37-173 24-150 (192)
51 2ged_A SR-beta, signal recogni 99.7 4.8E-16 1.6E-20 122.0 12.9 139 37-189 46-189 (193)
52 2a5j_A RAS-related protein RAB 99.7 6E-16 2.1E-20 121.5 13.4 126 37-174 19-146 (191)
53 3pqc_A Probable GTP-binding pr 99.7 2.4E-15 8.4E-20 117.7 16.8 121 38-167 22-146 (195)
54 3oes_A GTPase rhebl1; small GT 99.7 2E-16 7E-21 125.2 10.6 126 38-175 23-150 (201)
55 2fg5_A RAB-22B, RAS-related pr 99.7 2.2E-16 7.6E-21 124.2 10.6 126 37-174 21-148 (192)
56 1r2q_A RAS-related protein RAB 99.7 6.4E-16 2.2E-20 118.2 12.9 125 38-174 5-131 (170)
57 2hup_A RAS-related protein RAB 99.7 6.1E-16 2.1E-20 122.7 13.1 127 37-175 27-155 (201)
58 3a1s_A Iron(II) transport prot 99.7 1.2E-15 3.9E-20 126.1 15.0 121 38-168 4-124 (258)
59 2oil_A CATX-8, RAS-related pro 99.7 8.1E-16 2.8E-20 120.8 13.4 126 36-173 22-149 (193)
60 4dcu_A GTP-binding protein ENG 99.7 5E-16 1.7E-20 138.3 13.4 135 38-178 194-330 (456)
61 2o52_A RAS-related protein RAB 99.7 4.7E-16 1.6E-20 123.2 11.5 127 37-175 23-151 (200)
62 2gf9_A RAS-related protein RAB 99.7 1.6E-15 5.5E-20 118.8 14.3 124 38-173 21-146 (189)
63 2fu5_C RAS-related protein RAB 99.7 2.1E-16 7.1E-21 123.0 9.0 126 38-175 7-134 (183)
64 3c5c_A RAS-like protein 12; GD 99.7 2.7E-15 9.1E-20 117.6 15.4 127 37-175 19-148 (187)
65 2ce2_X GTPase HRAS; signaling 99.7 2.5E-15 8.7E-20 114.1 14.6 119 38-168 2-122 (166)
66 4djt_A GTP-binding nuclear pro 99.7 6.1E-16 2.1E-20 123.9 11.6 121 37-169 9-132 (218)
67 3gee_A MNME, tRNA modification 99.7 3.3E-16 1.1E-20 139.7 11.0 126 38-169 232-358 (476)
68 3q85_A GTP-binding protein REM 99.7 1.7E-15 6E-20 116.0 13.6 127 39-175 2-130 (169)
69 3con_A GTPase NRAS; structural 99.7 2.8E-15 9.7E-20 117.2 15.1 121 36-168 18-140 (190)
70 2lkc_A Translation initiation 99.7 5.2E-16 1.8E-20 119.9 10.6 116 37-168 6-121 (178)
71 2gf0_A GTP-binding protein DI- 99.7 1.3E-15 4.3E-20 120.0 12.9 121 37-168 6-128 (199)
72 1wms_A RAB-9, RAB9, RAS-relate 99.7 1.5E-15 5.2E-20 117.2 13.0 120 38-167 6-129 (177)
73 3bc1_A RAS-related protein RAB 99.7 1.1E-15 3.9E-20 119.4 12.4 125 38-173 10-146 (195)
74 1fzq_A ADP-ribosylation factor 99.7 1.9E-15 6.7E-20 117.7 13.5 118 37-168 14-131 (181)
75 3cpj_B GTP-binding protein YPT 99.7 1.1E-15 3.8E-20 123.0 12.5 125 38-174 12-138 (223)
76 1ksh_A ARF-like protein 2; sma 99.6 3.5E-15 1.2E-19 116.3 14.8 118 37-168 16-133 (186)
77 2iwr_A Centaurin gamma 1; ANK 99.6 3.8E-15 1.3E-19 115.2 14.8 114 37-167 5-121 (178)
78 1zj6_A ADP-ribosylation factor 99.6 3.1E-15 1.1E-19 116.9 14.4 117 37-167 14-130 (187)
79 1zbd_A Rabphilin-3A; G protein 99.6 2.1E-15 7.2E-20 119.3 13.5 125 38-174 7-133 (203)
80 3cbq_A GTP-binding protein REM 99.6 4.3E-15 1.5E-19 117.3 15.0 129 37-175 21-151 (195)
81 2p5s_A RAS and EF-hand domain 99.6 1.5E-15 5.1E-20 120.1 12.3 119 37-167 26-146 (199)
82 1zd9_A ADP-ribosylation factor 99.6 4.3E-15 1.5E-19 116.3 14.9 118 37-167 20-137 (188)
83 2fh5_B SR-beta, signal recogni 99.6 6.1E-15 2.1E-19 117.7 16.0 116 38-168 6-129 (214)
84 3llu_A RAS-related GTP-binding 99.6 3.1E-15 1.1E-19 118.0 14.1 125 36-167 17-142 (196)
85 3r7w_A Gtpase1, GTP-binding pr 99.6 1.2E-15 4E-20 129.1 12.4 125 38-167 2-128 (307)
86 2wjg_A FEOB, ferrous iron tran 99.6 3.4E-15 1.2E-19 116.5 14.0 120 38-167 6-125 (188)
87 3k53_A Ferrous iron transport 99.6 3.9E-15 1.3E-19 123.6 15.1 121 38-167 2-122 (271)
88 1r8s_A ADP-ribosylation factor 99.6 2.9E-15 9.8E-20 114.2 13.2 114 40-167 1-114 (164)
89 2h57_A ADP-ribosylation factor 99.6 1.8E-15 6.2E-20 118.5 12.3 120 37-167 19-139 (190)
90 2b6h_A ADP-ribosylation factor 99.6 5.2E-15 1.8E-19 116.4 15.0 117 37-167 27-143 (192)
91 2ew1_A RAS-related protein RAB 99.6 1.1E-15 3.7E-20 121.5 11.1 126 37-174 24-151 (201)
92 4bas_A ADP-ribosylation factor 99.6 2.1E-15 7.1E-20 118.7 12.6 122 36-168 14-141 (199)
93 1upt_A ARL1, ADP-ribosylation 99.6 1.6E-15 5.5E-20 116.3 11.2 118 37-168 5-122 (171)
94 1x3s_A RAS-related protein RAB 99.6 3.3E-15 1.1E-19 117.1 13.0 119 38-167 14-134 (195)
95 1m2o_B GTP-binding protein SAR 99.6 3E-15 1E-19 117.7 12.8 117 37-167 21-137 (190)
96 3reg_A RHO-like small GTPase; 99.6 2.3E-15 7.8E-20 118.4 11.9 118 37-168 21-141 (194)
97 1xzp_A Probable tRNA modificat 99.6 9.6E-16 3.3E-20 136.9 10.8 116 38-167 242-363 (482)
98 3qq5_A Small GTP-binding prote 99.6 7.7E-16 2.6E-20 135.3 9.9 123 38-170 33-156 (423)
99 2atx_A Small GTP binding prote 99.6 4.7E-15 1.6E-19 116.5 13.5 117 38-168 17-136 (194)
100 1vg8_A RAS-related protein RAB 99.6 4.2E-15 1.4E-19 117.7 13.3 120 38-167 7-130 (207)
101 1ky3_A GTP-binding protein YPT 99.6 1.8E-15 6.1E-20 117.1 10.9 121 37-167 6-131 (182)
102 2q3h_A RAS homolog gene family 99.6 3.3E-15 1.1E-19 118.0 12.5 118 37-168 18-138 (201)
103 2j1l_A RHO-related GTP-binding 99.6 2.3E-15 7.8E-20 120.5 11.7 118 37-168 32-152 (214)
104 4dcu_A GTP-binding protein ENG 99.6 7.7E-16 2.6E-20 137.1 9.7 122 38-167 22-144 (456)
105 2yc2_C IFT27, small RAB-relate 99.6 9.3E-16 3.2E-20 121.4 9.2 122 38-168 19-146 (208)
106 2h17_A ADP-ribosylation factor 99.6 1.9E-15 6.3E-20 117.7 10.7 118 36-167 18-135 (181)
107 1f6b_A SAR1; gtpases, N-termin 99.6 2.8E-15 9.5E-20 118.7 11.8 117 37-167 23-139 (198)
108 3b1v_A Ferrous iron uptake tra 99.6 4.2E-15 1.4E-19 123.6 13.3 118 39-167 3-120 (272)
109 3dz8_A RAS-related protein RAB 99.6 1.6E-15 5.4E-20 119.1 9.8 125 38-174 22-148 (191)
110 2e87_A Hypothetical protein PH 99.6 1.2E-14 4.2E-19 125.4 16.2 125 37-167 165-293 (357)
111 2hjg_A GTP-binding protein ENG 99.6 8.8E-16 3E-20 135.9 9.0 121 40-168 4-125 (436)
112 2g3y_A GTP-binding protein GEM 99.6 1.3E-14 4.4E-19 116.3 15.0 129 38-175 36-166 (211)
113 2x77_A ADP-ribosylation factor 99.6 4E-15 1.4E-19 116.4 11.7 118 37-168 20-137 (189)
114 3gj0_A GTP-binding nuclear pro 99.6 1.4E-15 4.8E-20 122.1 8.9 121 36-168 12-133 (221)
115 3ihw_A Centg3; RAS, centaurin, 99.6 1.3E-14 4.5E-19 113.4 14.1 114 36-167 17-132 (184)
116 2fv8_A H6, RHO-related GTP-bin 99.6 3.2E-15 1.1E-19 118.9 10.7 116 38-167 24-142 (207)
117 1moz_A ARL1, ADP-ribosylation 99.6 5.7E-15 1.9E-19 114.6 11.9 117 37-167 16-132 (183)
118 3geh_A MNME, tRNA modification 99.6 5.9E-16 2E-20 137.6 6.9 121 38-168 223-344 (462)
119 1mh1_A RAC1; GTP-binding, GTPa 99.6 2.6E-15 9E-20 116.6 9.9 116 38-167 4-122 (186)
120 1mky_A Probable GTP-binding pr 99.6 6.5E-15 2.2E-19 130.5 13.4 126 38-175 179-313 (439)
121 2gco_A H9, RHO-related GTP-bin 99.6 4.5E-15 1.5E-19 117.5 11.0 116 38-167 24-142 (201)
122 3l0i_B RAS-related protein RAB 99.6 2.3E-16 7.9E-21 124.7 3.3 122 37-170 31-154 (199)
123 4gzl_A RAS-related C3 botulinu 99.6 2E-15 6.7E-20 120.0 8.1 117 37-167 28-147 (204)
124 3q3j_B RHO-related GTP-binding 99.6 4.4E-15 1.5E-19 119.0 10.0 118 37-168 25-145 (214)
125 2f7s_A C25KG, RAS-related prot 99.6 3.5E-15 1.2E-19 119.3 9.0 124 37-173 23-160 (217)
126 2j0v_A RAC-like GTP-binding pr 99.6 5.4E-15 1.9E-19 117.8 9.9 116 38-167 8-126 (212)
127 1jwy_B Dynamin A GTPase domain 99.6 2E-14 6.8E-19 121.6 13.5 125 37-169 22-213 (315)
128 1m7b_A RND3/RHOE small GTP-bin 99.6 3.5E-15 1.2E-19 116.4 8.1 116 38-167 6-124 (184)
129 2cjw_A GTP-binding protein GEM 99.6 2E-14 7E-19 113.1 12.6 127 38-174 5-134 (192)
130 1ega_A Protein (GTP-binding pr 99.6 2.8E-15 9.6E-20 126.5 7.5 120 38-167 7-129 (301)
131 1nrj_B SR-beta, signal recogni 99.6 2.8E-14 9.6E-19 114.1 12.9 124 37-170 10-136 (218)
132 3bwd_D RAC-like GTP-binding pr 99.6 2.9E-15 1E-19 116.1 6.2 116 38-167 7-125 (182)
133 4a9a_A Ribosome-interacting GT 99.6 1.5E-14 5.1E-19 125.0 11.1 117 40-166 73-194 (376)
134 1gwn_A RHO-related GTP-binding 99.6 6.2E-15 2.1E-19 117.4 8.1 117 37-167 26-145 (205)
135 2j69_A Bacterial dynamin-like 99.6 8.8E-15 3E-19 136.2 10.0 121 38-169 68-245 (695)
136 3o47_A ADP-ribosylation factor 99.6 4.3E-14 1.5E-18 120.6 13.5 116 38-167 164-279 (329)
137 2cxx_A Probable GTP-binding pr 99.6 5.7E-14 1.9E-18 109.5 13.1 121 40-168 2-136 (190)
138 2aka_B Dynamin-1; fusion prote 99.5 1.2E-13 4.2E-18 115.8 14.5 124 38-169 25-207 (299)
139 2qtf_A Protein HFLX, GTP-bindi 99.5 1.6E-13 5.4E-18 118.6 15.3 124 39-167 178-305 (364)
140 2zej_A Dardarin, leucine-rich 99.5 1.1E-14 3.8E-19 113.7 7.4 117 39-167 2-125 (184)
141 3t1o_A Gliding protein MGLA; G 99.5 3.7E-14 1.3E-18 111.0 10.1 120 38-167 13-148 (198)
142 1lnz_A SPO0B-associated GTP-bi 99.5 1.9E-14 6.5E-19 123.3 8.7 120 41-167 160-287 (342)
143 3p26_A Elongation factor 1 alp 99.5 1.1E-13 3.7E-18 124.0 13.3 120 36-168 30-185 (483)
144 3t34_A Dynamin-related protein 99.5 2E-13 6.8E-18 117.8 13.9 125 40-171 35-220 (360)
145 2wkq_A NPH1-1, RAS-related C3 99.5 6.1E-14 2.1E-18 119.0 10.5 118 36-167 152-272 (332)
146 3lvq_E ARF-GAP with SH3 domain 99.5 1.6E-13 5.6E-18 123.2 12.9 117 37-167 320-436 (497)
147 2f9l_A RAB11B, member RAS onco 99.5 6.2E-13 2.1E-17 105.0 14.4 125 38-174 4-130 (199)
148 2qpt_A EH domain-containing pr 99.5 1.2E-13 4.3E-18 125.3 11.5 123 38-167 64-231 (550)
149 2x2e_A Dynamin-1; nitration, h 99.5 3.3E-13 1.1E-17 116.2 13.7 126 38-169 30-212 (353)
150 2qag_A Septin-2, protein NEDD5 99.5 3.7E-13 1.3E-17 116.2 13.6 124 38-167 36-187 (361)
151 3th5_A RAS-related C3 botulinu 99.2 2.7E-15 9.1E-20 119.0 0.0 118 37-168 28-148 (204)
152 3dpu_A RAB family protein; roc 99.5 1.1E-12 3.8E-17 118.9 17.1 123 37-175 39-171 (535)
153 3r7w_B Gtpase2, GTP-binding pr 99.5 4.6E-13 1.6E-17 113.3 12.5 117 41-167 1-119 (331)
154 3j2k_7 ERF3, eukaryotic polype 99.5 1.1E-12 3.7E-17 116.1 14.5 118 37-167 15-168 (439)
155 1wxq_A GTP-binding protein; st 99.5 1.9E-13 6.4E-18 119.4 9.4 88 40-131 1-113 (397)
156 3zvr_A Dynamin-1; hydrolase, D 99.4 1.9E-12 6.4E-17 120.6 15.5 125 38-170 50-233 (772)
157 1oix_A RAS-related protein RAB 99.4 2.6E-12 8.8E-17 100.9 14.2 122 38-171 28-151 (191)
158 3izq_1 HBS1P, elongation facto 99.4 3.1E-13 1.1E-17 124.0 9.3 119 37-168 165-319 (611)
159 1zun_B Sulfate adenylate trans 99.4 1.9E-12 6.7E-17 114.4 13.6 116 38-167 23-170 (434)
160 3tr5_A RF-3, peptide chain rel 99.4 2.4E-12 8.2E-17 116.2 12.1 115 38-167 12-147 (528)
161 2c78_A Elongation factor TU-A; 99.4 2.5E-12 8.7E-17 112.6 11.5 116 37-167 9-141 (405)
162 3sjy_A Translation initiation 99.4 2.1E-12 7.1E-17 113.1 10.9 118 37-167 6-142 (403)
163 1wb1_A Translation elongation 99.4 3.3E-12 1.1E-16 114.2 12.1 116 37-167 17-138 (482)
164 1f60_A Elongation factor EEF1A 99.4 2E-12 7E-17 115.0 10.2 118 37-167 5-158 (458)
165 1pui_A ENGB, probable GTP-bind 99.4 1E-11 3.4E-16 98.5 12.9 121 38-167 25-150 (210)
166 1d2e_A Elongation factor TU (E 99.3 6.4E-12 2.2E-16 109.8 11.5 115 38-167 2-132 (397)
167 1jny_A EF-1-alpha, elongation 99.3 4.4E-12 1.5E-16 112.1 10.1 119 37-168 4-158 (435)
168 2qag_C Septin-7; cell cycle, c 99.3 3.5E-12 1.2E-16 111.8 9.1 124 38-167 30-180 (418)
169 2h5e_A Peptide chain release f 99.3 2.6E-11 8.8E-16 109.5 13.8 115 38-167 12-147 (529)
170 3izy_P Translation initiation 99.3 2.4E-13 8.3E-18 122.5 0.5 115 38-168 3-118 (537)
171 1kk1_A EIF2gamma; initiation o 99.3 6.2E-11 2.1E-15 104.0 15.5 118 37-167 8-150 (410)
172 2xex_A Elongation factor G; GT 99.3 5.8E-11 2E-15 110.5 15.7 115 38-167 9-140 (693)
173 1zo1_I IF2, translation initia 99.3 2.6E-12 8.8E-17 114.9 5.0 115 38-168 3-117 (501)
174 1s0u_A EIF-2-gamma, translatio 99.2 8.4E-11 2.9E-15 103.1 13.7 119 38-169 7-150 (408)
175 2elf_A Protein translation elo 99.2 3.8E-11 1.3E-15 103.9 11.3 101 41-166 23-125 (370)
176 1r5b_A Eukaryotic peptide chai 99.2 1.9E-11 6.7E-16 108.9 9.0 117 37-167 41-194 (467)
177 1dar_A EF-G, elongation factor 99.2 5.7E-11 2E-15 110.6 12.4 115 38-167 11-142 (691)
178 2qnr_A Septin-2, protein NEDD5 99.2 7.8E-11 2.7E-15 99.2 12.2 124 38-167 17-168 (301)
179 1udx_A The GTP-binding protein 99.2 8.5E-11 2.9E-15 103.0 12.8 120 40-167 158-282 (416)
180 3ec1_A YQEH GTPase; atnos1, at 99.2 1.7E-12 5.7E-17 112.4 1.6 121 39-168 162-288 (369)
181 3mca_A HBS1, elongation factor 99.2 1E-12 3.4E-17 120.3 0.2 118 37-167 175-328 (592)
182 3h2y_A GTPase family protein; 99.2 2.2E-12 7.6E-17 111.6 2.1 121 39-168 160-287 (368)
183 1puj_A YLQF, conserved hypothe 99.2 3.6E-11 1.2E-15 100.3 9.3 67 37-106 118-184 (282)
184 1jal_A YCHF protein; nucleotid 99.2 2E-11 6.7E-16 105.0 7.3 84 40-130 3-107 (363)
185 3sop_A Neuronal-specific septi 99.2 1.9E-10 6.3E-15 95.4 11.9 123 39-167 2-153 (270)
186 1n0u_A EF-2, elongation factor 99.2 1.3E-10 4.3E-15 110.4 12.2 115 38-167 18-163 (842)
187 2rdo_7 EF-G, elongation factor 99.2 4.6E-10 1.6E-14 104.7 15.6 115 38-167 9-147 (704)
188 1g7s_A Translation initiation 99.2 1.2E-10 4E-15 106.5 11.3 114 38-167 4-135 (594)
189 3avx_A Elongation factor TS, e 99.2 1.4E-10 4.9E-15 111.5 12.0 117 36-167 293-425 (1289)
190 3cb4_D GTP-binding protein LEP 99.2 1.1E-10 3.8E-15 106.6 10.3 115 38-167 3-136 (599)
191 2ywe_A GTP-binding protein LEP 99.1 1.5E-10 5E-15 105.7 10.5 115 38-167 5-138 (600)
192 2qag_B Septin-6, protein NEDD5 99.1 5E-10 1.7E-14 98.0 13.0 124 38-167 41-189 (427)
193 3c5h_A Glucocorticoid receptor 99.1 3E-11 1E-15 99.3 4.8 48 119-167 162-211 (255)
194 2ohf_A Protein OLA1, GTP-bindi 99.1 1E-10 3.5E-15 101.5 7.3 87 37-130 20-127 (396)
195 3p32_A Probable GTPase RV1496/ 99.1 2.2E-10 7.4E-15 98.7 7.7 121 25-167 65-230 (355)
196 2dy1_A Elongation factor G; tr 99.1 2.8E-09 9.7E-14 98.8 15.5 115 38-167 8-139 (665)
197 2dby_A GTP-binding protein; GD 99.1 4.1E-10 1.4E-14 97.1 8.8 84 40-130 2-110 (368)
198 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 4.8E-10 1.7E-14 97.4 8.3 87 37-129 18-125 (392)
199 2p67_A LAO/AO transport system 99.0 1.2E-09 4.2E-14 93.4 10.0 118 28-167 45-207 (341)
200 3vqt_A RF-3, peptide chain rel 99.0 6E-09 2.1E-13 94.4 14.6 124 38-179 30-174 (548)
201 2www_A Methylmalonic aciduria 99.0 1.4E-09 4.9E-14 93.3 8.9 24 38-61 73-96 (349)
202 1f5n_A Interferon-induced guan 99.0 2.7E-09 9.1E-14 97.1 10.3 66 35-102 34-106 (592)
203 3cnl_A YLQF, putative uncharac 98.9 1.2E-09 4.2E-14 90.0 5.8 60 40-102 100-159 (262)
204 2j37_W Signal recognition part 98.9 1E-08 3.5E-13 91.7 11.8 118 38-167 100-253 (504)
205 2wsm_A Hydrogenase expression/ 98.9 3.4E-09 1.2E-13 84.5 6.8 25 38-62 29-53 (221)
206 2qm8_A GTPase/ATPase; G protei 98.8 4.6E-09 1.6E-13 89.7 6.6 34 28-61 44-77 (337)
207 3szr_A Interferon-induced GTP- 98.7 2.1E-07 7.3E-12 85.4 14.0 39 25-63 27-69 (608)
208 1yrb_A ATP(GTP)binding protein 98.7 8.8E-09 3E-13 84.3 4.3 33 36-68 11-48 (262)
209 3dm5_A SRP54, signal recogniti 98.7 1.5E-07 5.3E-12 82.7 12.1 119 38-167 99-252 (443)
210 4fn5_A EF-G 1, elongation fact 98.7 2.6E-07 8.9E-12 86.3 14.3 122 40-179 14-159 (709)
211 3ohm_A Guanine nucleotide-bind 98.6 3.8E-07 1.3E-11 77.3 11.7 78 80-167 160-247 (327)
212 3j25_A Tetracycline resistance 98.6 3.4E-08 1.2E-12 91.2 5.5 113 40-167 3-132 (638)
213 1tq4_A IIGP1, interferon-induc 98.6 3.3E-07 1.1E-11 80.1 11.2 117 38-167 68-188 (413)
214 2v3c_C SRP54, signal recogniti 98.6 1.2E-07 4.1E-12 83.4 7.9 120 38-167 98-251 (432)
215 1cip_A Protein (guanine nucleo 98.6 2.2E-07 7.6E-12 79.6 9.1 77 82-167 188-273 (353)
216 4fid_A G protein alpha subunit 98.5 8.3E-07 2.8E-11 75.5 12.1 77 81-167 155-241 (340)
217 3kl4_A SRP54, signal recogniti 98.4 6E-07 2E-11 78.8 8.4 121 38-167 96-251 (433)
218 3q5d_A Atlastin-1; G protein, 98.2 7.6E-06 2.6E-10 72.1 9.5 26 37-62 65-90 (447)
219 1j8m_F SRP54, signal recogniti 98.1 2E-05 6.8E-10 65.9 10.9 120 39-167 98-252 (297)
220 2xxa_A Signal recognition part 98.1 9.9E-06 3.4E-10 71.2 8.7 119 38-167 99-253 (433)
221 3e70_C DPA, signal recognition 98.0 2.3E-05 7.7E-10 66.5 8.6 119 38-167 128-281 (328)
222 1rj9_A FTSY, signal recognitio 97.9 8.1E-05 2.8E-09 62.4 11.4 119 38-167 101-260 (304)
223 2yhs_A FTSY, cell division pro 97.9 5.4E-05 1.8E-09 67.3 10.1 119 38-167 292-451 (503)
224 1t9h_A YLOQ, probable GTPase E 97.8 6E-06 2.1E-10 69.3 2.4 58 39-100 173-237 (307)
225 2px0_A Flagellar biosynthesis 97.7 1.7E-05 5.7E-10 66.3 3.9 119 38-167 104-252 (296)
226 2yv5_A YJEQ protein; hydrolase 97.7 3.6E-05 1.2E-09 64.4 4.6 56 40-99 166-228 (302)
227 2ffh_A Protein (FFH); SRP54, s 97.7 4.6E-05 1.6E-09 66.7 5.4 72 85-167 179-250 (425)
228 1u0l_A Probable GTPase ENGC; p 97.6 8.4E-05 2.9E-09 62.1 5.7 59 40-101 170-235 (301)
229 1azs_C GS-alpha; complex (lyas 97.6 6.1E-05 2.1E-09 65.5 4.8 78 81-167 211-297 (402)
230 2rcn_A Probable GTPase ENGC; Y 97.5 7.4E-05 2.5E-09 63.9 4.6 25 40-64 216-240 (358)
231 1zcb_A G alpha I/13; GTP-bindi 97.5 6.9E-05 2.4E-09 64.3 4.1 78 81-167 195-281 (362)
232 2og2_A Putative signal recogni 97.4 0.00058 2E-08 58.5 9.3 25 38-62 156-180 (359)
233 3b9q_A Chloroplast SRP recepto 97.4 0.00053 1.8E-08 57.3 8.9 25 38-62 99-123 (302)
234 1vma_A Cell division protein F 97.4 9.3E-05 3.2E-09 62.0 4.0 24 38-61 103-126 (306)
235 1zu4_A FTSY; GTPase, signal re 97.3 0.00065 2.2E-08 57.2 8.3 24 38-61 104-127 (320)
236 1ls1_A Signal recognition part 97.3 0.00022 7.6E-09 59.4 5.2 72 85-167 179-250 (295)
237 4dzz_A Plasmid partitioning pr 97.3 0.00048 1.7E-08 53.5 6.3 68 86-166 75-142 (206)
238 4ido_A Atlastin-1; GTPase, GTP 97.3 0.0023 7.9E-08 56.2 11.0 101 40-147 68-195 (457)
239 3ney_A 55 kDa erythrocyte memb 97.3 1.7E-05 5.9E-10 62.2 -2.2 26 38-63 18-43 (197)
240 2xtz_A Guanine nucleotide-bind 97.2 0.00027 9.3E-09 60.4 4.8 73 86-167 182-263 (354)
241 3c8u_A Fructokinase; YP_612366 97.1 0.0003 1E-08 55.2 3.8 36 28-63 11-46 (208)
242 2hf9_A Probable hydrogenase ni 97.1 0.00054 1.8E-08 54.1 4.8 25 38-62 37-61 (226)
243 1ye8_A Protein THEP1, hypothet 97.0 0.00033 1.1E-08 53.9 2.8 23 41-63 2-24 (178)
244 1kgd_A CASK, peripheral plasma 96.9 0.00037 1.3E-08 53.5 2.6 23 40-62 6-28 (180)
245 1lvg_A Guanylate kinase, GMP k 96.9 0.00037 1.3E-08 54.4 2.6 23 40-62 5-27 (198)
246 1znw_A Guanylate kinase, GMP k 96.8 0.00051 1.7E-08 53.9 2.5 24 40-63 21-44 (207)
247 2kjq_A DNAA-related protein; s 96.7 0.0057 2E-07 45.4 7.8 25 39-63 36-60 (149)
248 3tif_A Uncharacterized ABC tra 96.7 0.00078 2.7E-08 54.2 3.0 24 40-63 32-55 (235)
249 3a00_A Guanylate kinase, GMP k 96.7 0.00065 2.2E-08 52.3 2.5 23 41-63 3-25 (186)
250 3tr0_A Guanylate kinase, GMP k 96.7 0.00069 2.4E-08 52.6 2.6 24 39-62 7-30 (205)
251 1z6g_A Guanylate kinase; struc 96.7 0.00069 2.4E-08 53.7 2.5 25 39-63 23-47 (218)
252 1s96_A Guanylate kinase, GMP k 96.7 0.00071 2.4E-08 53.8 2.6 26 38-63 15-40 (219)
253 1zp6_A Hypothetical protein AT 96.7 0.0012 4.2E-08 50.6 3.8 24 39-62 9-32 (191)
254 1odf_A YGR205W, hypothetical 3 96.7 0.0022 7.4E-08 53.3 5.5 27 36-62 28-54 (290)
255 2pcj_A ABC transporter, lipopr 96.7 0.00088 3E-08 53.4 2.9 24 40-63 31-54 (224)
256 2cbz_A Multidrug resistance-as 96.6 0.0011 3.9E-08 53.3 3.3 24 40-63 32-55 (237)
257 2onk_A Molybdate/tungstate ABC 96.6 0.0012 3.9E-08 53.4 3.2 24 40-63 25-48 (240)
258 1mv5_A LMRA, multidrug resista 96.6 0.0013 4.3E-08 53.2 3.3 25 39-63 28-52 (243)
259 3gfo_A Cobalt import ATP-bindi 96.6 0.0011 3.9E-08 54.5 3.1 24 40-63 35-58 (275)
260 4gp7_A Metallophosphoesterase; 96.6 0.0012 4E-08 50.2 3.0 24 39-62 9-32 (171)
261 1b0u_A Histidine permease; ABC 96.6 0.0012 3.9E-08 54.1 3.1 24 40-63 33-56 (262)
262 1sgw_A Putative ABC transporte 96.6 0.0012 4.1E-08 52.3 3.1 23 41-63 37-59 (214)
263 4g1u_C Hemin import ATP-bindin 96.6 0.0012 4E-08 54.2 3.1 24 40-63 38-61 (266)
264 2ff7_A Alpha-hemolysin translo 96.6 0.0013 4.3E-08 53.4 3.3 24 40-63 36-59 (247)
265 1g6h_A High-affinity branched- 96.6 0.0012 4E-08 53.8 3.0 24 40-63 34-57 (257)
266 2pze_A Cystic fibrosis transme 96.5 0.0014 4.8E-08 52.4 3.3 24 40-63 35-58 (229)
267 3asz_A Uridine kinase; cytidin 96.5 0.0012 4.2E-08 51.6 2.9 25 38-62 5-29 (211)
268 1htw_A HI0065; nucleotide-bind 96.5 0.0012 3.9E-08 49.8 2.5 26 38-63 32-57 (158)
269 2eyu_A Twitching motility prot 96.5 0.0011 3.8E-08 54.2 2.6 26 38-63 24-49 (261)
270 2olj_A Amino acid ABC transpor 96.5 0.0014 4.7E-08 53.7 3.1 24 40-63 51-74 (263)
271 2d2e_A SUFC protein; ABC-ATPas 96.5 0.0014 4.8E-08 53.2 3.1 23 40-62 30-52 (250)
272 2qi9_C Vitamin B12 import ATP- 96.5 0.0015 5.3E-08 52.9 3.3 24 40-63 27-50 (249)
273 1ji0_A ABC transporter; ATP bi 96.5 0.0014 4.8E-08 52.8 3.0 24 40-63 33-56 (240)
274 2ghi_A Transport protein; mult 96.5 0.0015 5.2E-08 53.3 3.3 24 40-63 47-70 (260)
275 1vpl_A ABC transporter, ATP-bi 96.5 0.0014 4.9E-08 53.3 3.1 24 40-63 42-65 (256)
276 2zu0_C Probable ATP-dependent 96.5 0.0016 5.6E-08 53.3 3.4 23 40-62 47-69 (267)
277 1fnn_A CDC6P, cell division co 96.5 0.042 1.4E-06 46.6 12.4 22 41-62 46-67 (389)
278 2ixe_A Antigen peptide transpo 96.5 0.0016 5.5E-08 53.5 3.3 24 40-63 46-69 (271)
279 2ihy_A ABC transporter, ATP-bi 96.4 0.0017 5.8E-08 53.6 3.3 24 40-63 48-71 (279)
280 2nq2_C Hypothetical ABC transp 96.4 0.0018 6.3E-08 52.6 3.3 24 40-63 32-55 (253)
281 3nh6_A ATP-binding cassette SU 96.4 0.0013 4.5E-08 55.0 2.4 24 40-63 81-104 (306)
282 2yz2_A Putative ABC transporte 96.4 0.0019 6.5E-08 52.9 3.3 24 40-63 34-57 (266)
283 4b4t_L 26S protease subunit RP 96.4 0.026 9E-07 49.4 10.7 25 38-62 214-238 (437)
284 3tau_A Guanylate kinase, GMP k 96.4 0.002 6.8E-08 50.5 3.2 26 38-63 7-32 (208)
285 3tlx_A Adenylate kinase 2; str 96.4 0.0046 1.6E-07 49.7 5.4 33 28-60 18-50 (243)
286 2j41_A Guanylate kinase; GMP, 96.4 0.002 6.9E-08 49.9 3.2 25 39-63 6-30 (207)
287 2v9p_A Replication protein E1; 96.4 0.003 1E-07 52.8 4.4 25 38-62 125-149 (305)
288 2bbw_A Adenylate kinase 4, AK4 96.3 0.0024 8.1E-08 51.4 3.6 26 38-63 26-54 (246)
289 3b85_A Phosphate starvation-in 96.3 0.0014 4.7E-08 51.7 2.0 23 40-62 23-45 (208)
290 2pjz_A Hypothetical protein ST 96.3 0.0023 7.7E-08 52.4 3.3 24 40-63 31-54 (263)
291 3uie_A Adenylyl-sulfate kinase 96.3 0.0032 1.1E-07 48.9 4.0 26 37-62 23-48 (200)
292 2i3b_A HCR-ntpase, human cance 96.3 0.0017 5.7E-08 50.4 2.4 23 41-63 3-25 (189)
293 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.078 2.7E-06 42.3 12.5 25 38-62 38-62 (262)
294 2bdt_A BH3686; alpha-beta prot 96.3 0.0018 6.3E-08 49.7 2.5 21 41-61 4-24 (189)
295 3h4m_A Proteasome-activating n 96.3 0.025 8.7E-07 46.0 9.6 25 38-62 50-74 (285)
296 3tqc_A Pantothenate kinase; bi 96.3 0.0054 1.9E-07 51.6 5.5 25 37-61 90-114 (321)
297 1kag_A SKI, shikimate kinase I 96.3 0.002 6.8E-08 48.6 2.6 23 40-62 5-27 (173)
298 1rz3_A Hypothetical protein rb 96.3 0.0053 1.8E-07 47.7 5.1 36 26-61 8-44 (201)
299 1ex7_A Guanylate kinase; subst 96.2 0.0024 8.3E-08 49.4 3.0 21 42-62 4-24 (186)
300 3cwq_A Para family chromosome 96.2 0.0081 2.8E-07 47.1 6.1 66 86-167 67-133 (209)
301 3jvv_A Twitching mobility prot 96.2 0.0019 6.5E-08 55.2 2.5 23 40-62 124-146 (356)
302 2qor_A Guanylate kinase; phosp 96.2 0.0025 8.7E-08 49.7 3.0 25 38-62 11-35 (204)
303 2gza_A Type IV secretion syste 96.2 0.0022 7.7E-08 54.8 2.9 25 39-63 175-199 (361)
304 4eun_A Thermoresistant glucoki 96.2 0.0026 8.8E-08 49.5 3.0 24 38-61 28-51 (200)
305 4b4t_I 26S protease regulatory 96.2 0.036 1.2E-06 48.3 10.4 25 38-62 215-239 (437)
306 2bbs_A Cystic fibrosis transme 96.2 0.0026 9E-08 52.8 3.1 23 41-63 66-88 (290)
307 3aez_A Pantothenate kinase; tr 96.2 0.0062 2.1E-07 51.0 5.3 26 37-62 88-113 (312)
308 3lnc_A Guanylate kinase, GMP k 96.2 0.0017 5.8E-08 51.7 1.8 24 40-63 28-52 (231)
309 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.0024 8.1E-08 54.0 2.6 24 40-63 172-195 (330)
310 2f1r_A Molybdopterin-guanine d 96.1 0.0014 4.6E-08 50.1 1.0 23 41-63 4-26 (171)
311 1u0l_A Probable GTPase ENGC; p 96.1 0.008 2.7E-07 50.0 5.8 64 88-167 64-128 (301)
312 1ly1_A Polynucleotide kinase; 96.1 0.0039 1.3E-07 47.1 3.4 23 39-61 2-24 (181)
313 3tui_C Methionine import ATP-b 96.1 0.0032 1.1E-07 53.9 3.2 24 40-63 55-78 (366)
314 3fvq_A Fe(3+) IONS import ATP- 96.1 0.003 1E-07 54.0 2.9 24 40-63 31-54 (359)
315 4b4t_J 26S protease regulatory 96.1 0.043 1.5E-06 47.5 10.1 25 38-62 181-205 (405)
316 3n70_A Transport activator; si 96.0 0.0073 2.5E-07 44.4 4.7 26 37-62 22-47 (145)
317 1z47_A CYSA, putative ABC-tran 96.0 0.0033 1.1E-07 53.6 3.1 24 40-63 42-65 (355)
318 1cke_A CK, MSSA, protein (cyti 96.0 0.0033 1.1E-07 49.6 2.9 23 39-61 5-27 (227)
319 1lw7_A Transcriptional regulat 96.0 0.0028 9.5E-08 54.2 2.6 25 39-63 170-194 (365)
320 2jeo_A Uridine-cytidine kinase 96.0 0.0037 1.3E-07 50.2 3.2 25 38-62 24-48 (245)
321 1knq_A Gluconate kinase; ALFA/ 96.0 0.004 1.4E-07 47.0 3.2 23 39-61 8-30 (175)
322 3rlf_A Maltose/maltodextrin im 96.0 0.0036 1.2E-07 53.9 3.2 25 40-64 30-54 (381)
323 1p9r_A General secretion pathw 96.0 0.0028 9.6E-08 55.3 2.5 25 38-62 166-190 (418)
324 2it1_A 362AA long hypothetical 96.0 0.0037 1.3E-07 53.5 3.2 24 40-63 30-53 (362)
325 2ewv_A Twitching motility prot 96.0 0.0031 1.1E-07 54.2 2.7 25 38-62 135-159 (372)
326 4a74_A DNA repair and recombin 96.0 0.0029 1E-07 49.8 2.3 24 39-62 25-48 (231)
327 2yyz_A Sugar ABC transporter, 96.0 0.0037 1.3E-07 53.4 3.1 24 40-63 30-53 (359)
328 2oap_1 GSPE-2, type II secreti 95.9 0.0033 1.1E-07 56.3 2.8 25 39-63 260-284 (511)
329 1np6_A Molybdopterin-guanine d 95.9 0.0035 1.2E-07 47.9 2.6 23 40-62 7-29 (174)
330 3lw7_A Adenylate kinase relate 95.9 0.0045 1.6E-07 46.2 3.2 20 40-59 2-21 (179)
331 2v1u_A Cell division control p 95.9 0.061 2.1E-06 45.4 10.7 26 37-62 42-67 (387)
332 3ec2_A DNA replication protein 95.9 0.0054 1.9E-07 46.6 3.6 25 39-63 38-62 (180)
333 1g29_1 MALK, maltose transport 95.9 0.004 1.4E-07 53.5 3.1 25 40-64 30-54 (372)
334 2qt1_A Nicotinamide riboside k 95.9 0.0055 1.9E-07 47.7 3.7 26 37-62 19-44 (207)
335 1jjv_A Dephospho-COA kinase; P 95.9 0.0051 1.8E-07 47.8 3.5 22 40-61 3-24 (206)
336 1qhx_A CPT, protein (chloramph 95.9 0.0048 1.7E-07 46.6 3.3 23 39-61 3-25 (178)
337 1v43_A Sugar-binding transport 95.9 0.0042 1.4E-07 53.4 3.2 24 40-63 38-61 (372)
338 3kb2_A SPBC2 prophage-derived 95.9 0.0046 1.6E-07 46.3 3.1 21 41-61 3-23 (173)
339 2if2_A Dephospho-COA kinase; a 95.9 0.0039 1.3E-07 48.4 2.7 22 40-61 2-23 (204)
340 4b4t_K 26S protease regulatory 95.9 0.052 1.8E-06 47.4 10.0 25 38-62 205-229 (428)
341 2ehv_A Hypothetical protein PH 95.8 0.0046 1.6E-07 49.3 3.0 21 40-60 31-51 (251)
342 1jbk_A CLPB protein; beta barr 95.8 0.012 4.1E-07 44.4 5.3 36 25-62 31-66 (195)
343 3d31_A Sulfate/molybdate ABC t 95.8 0.0034 1.2E-07 53.4 2.3 24 40-63 27-50 (348)
344 3cm0_A Adenylate kinase; ATP-b 95.8 0.0061 2.1E-07 46.4 3.5 23 38-60 3-25 (186)
345 2rhm_A Putative kinase; P-loop 95.8 0.0058 2E-07 46.7 3.4 23 38-60 4-26 (193)
346 1gvn_B Zeta; postsegregational 95.8 0.011 3.8E-07 48.8 5.3 24 38-61 32-55 (287)
347 3t61_A Gluconokinase; PSI-biol 95.8 0.0039 1.3E-07 48.4 2.3 23 39-61 18-40 (202)
348 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.35 1.2E-05 40.3 14.6 24 39-62 45-68 (322)
349 3vaa_A Shikimate kinase, SK; s 95.8 0.0057 2E-07 47.4 3.3 24 38-61 24-47 (199)
350 1y63_A LMAJ004144AAA protein; 95.8 0.0064 2.2E-07 46.5 3.5 25 38-62 9-33 (184)
351 3qf7_A RAD50; ABC-ATPase, ATPa 95.8 0.026 8.9E-07 48.2 7.6 21 39-60 24-44 (365)
352 4b4t_H 26S protease regulatory 95.8 0.075 2.6E-06 46.8 10.5 25 38-62 242-266 (467)
353 1kht_A Adenylate kinase; phosp 95.7 0.0063 2.2E-07 46.4 3.3 23 39-61 3-25 (192)
354 3gd7_A Fusion complex of cysti 95.7 0.0052 1.8E-07 53.1 2.9 24 40-63 48-71 (390)
355 2cdn_A Adenylate kinase; phosp 95.7 0.0077 2.6E-07 46.6 3.7 25 36-60 17-41 (201)
356 1sq5_A Pantothenate kinase; P- 95.7 0.0057 2E-07 51.0 3.1 26 37-62 78-103 (308)
357 1tev_A UMP-CMP kinase; ploop, 95.7 0.0073 2.5E-07 46.1 3.4 23 38-60 2-24 (196)
358 1aky_A Adenylate kinase; ATP:A 95.7 0.0072 2.5E-07 47.5 3.5 23 38-60 3-25 (220)
359 4e22_A Cytidylate kinase; P-lo 95.7 0.0077 2.6E-07 48.7 3.7 26 38-63 26-54 (252)
360 3fb4_A Adenylate kinase; psych 95.7 0.0065 2.2E-07 47.5 3.2 21 40-60 1-21 (216)
361 3kta_A Chromosome segregation 95.7 0.006 2.1E-07 46.4 2.9 21 41-61 28-48 (182)
362 1oxx_K GLCV, glucose, ABC tran 95.6 0.0034 1.1E-07 53.6 1.5 24 40-63 32-55 (353)
363 1uf9_A TT1252 protein; P-loop, 95.6 0.0078 2.7E-07 46.4 3.5 25 38-62 7-31 (203)
364 3trf_A Shikimate kinase, SK; a 95.6 0.0074 2.5E-07 45.9 3.2 22 39-60 5-26 (185)
365 2jaq_A Deoxyguanosine kinase; 95.6 0.0078 2.7E-07 46.4 3.3 21 41-61 2-22 (205)
366 2vp4_A Deoxynucleoside kinase; 95.6 0.0071 2.4E-07 48.1 3.1 26 37-62 18-43 (230)
367 3dl0_A Adenylate kinase; phosp 95.6 0.0076 2.6E-07 47.2 3.3 21 40-60 1-21 (216)
368 1zcb_A G alpha I/13; GTP-bindi 95.6 0.0079 2.7E-07 51.5 3.6 24 36-59 30-53 (362)
369 2plr_A DTMP kinase, probable t 95.5 0.0087 3E-07 46.4 3.5 24 38-61 3-26 (213)
370 3b9p_A CG5977-PA, isoform A; A 95.5 0.16 5.4E-06 41.5 11.3 25 38-62 53-77 (297)
371 2v54_A DTMP kinase, thymidylat 95.5 0.0092 3.1E-07 46.1 3.5 25 38-62 3-27 (204)
372 2c95_A Adenylate kinase 1; tra 95.5 0.0089 3E-07 45.8 3.4 23 38-60 8-30 (196)
373 4b4t_M 26S protease regulatory 95.5 0.044 1.5E-06 47.9 8.2 25 38-62 214-238 (434)
374 2pez_A Bifunctional 3'-phospho 95.5 0.0082 2.8E-07 45.5 3.1 24 38-61 4-27 (179)
375 3co5_A Putative two-component 95.5 0.0082 2.8E-07 44.0 2.9 25 38-62 26-50 (143)
376 2x8a_A Nuclear valosin-contain 95.5 0.0064 2.2E-07 49.9 2.5 21 42-62 47-67 (274)
377 1nn5_A Similar to deoxythymidy 95.5 0.009 3.1E-07 46.5 3.3 24 38-61 8-31 (215)
378 1zd8_A GTP:AMP phosphotransfer 95.4 0.0085 2.9E-07 47.4 3.2 23 38-60 6-28 (227)
379 1in4_A RUVB, holliday junction 95.4 0.015 5.1E-07 49.0 4.8 24 39-62 51-74 (334)
380 1nks_A Adenylate kinase; therm 95.4 0.0084 2.9E-07 45.7 3.0 21 41-61 3-23 (194)
381 3end_A Light-independent proto 95.4 0.049 1.7E-06 45.0 7.9 69 86-166 156-225 (307)
382 1ixz_A ATP-dependent metallopr 95.4 0.0069 2.4E-07 48.7 2.6 22 41-62 51-72 (254)
383 1yqt_A RNAse L inhibitor; ATP- 95.4 0.0087 3E-07 54.0 3.4 24 40-63 48-71 (538)
384 1sxj_E Activator 1 40 kDa subu 95.4 0.0093 3.2E-07 50.3 3.4 20 42-61 39-58 (354)
385 1zak_A Adenylate kinase; ATP:A 95.4 0.0087 3E-07 47.1 2.9 23 38-60 4-26 (222)
386 2wwf_A Thymidilate kinase, put 95.4 0.0096 3.3E-07 46.3 3.1 24 38-61 9-32 (212)
387 2p65_A Hypothetical protein PF 95.3 0.016 5.6E-07 43.5 4.3 36 25-62 31-66 (187)
388 1vht_A Dephospho-COA kinase; s 95.3 0.012 4E-07 46.2 3.6 24 38-61 3-26 (218)
389 1nij_A Hypothetical protein YJ 95.3 0.0051 1.7E-07 51.6 1.5 23 41-63 6-28 (318)
390 2yvu_A Probable adenylyl-sulfa 95.3 0.013 4.4E-07 44.7 3.7 25 38-62 12-36 (186)
391 1ukz_A Uridylate kinase; trans 95.3 0.013 4.5E-07 45.3 3.8 23 38-60 14-36 (203)
392 1svm_A Large T antigen; AAA+ f 95.3 0.024 8E-07 48.8 5.6 25 38-62 168-192 (377)
393 2npi_A Protein CLP1; CLP1-PCF1 95.3 0.0067 2.3E-07 53.6 2.1 26 38-63 137-162 (460)
394 2p5t_B PEZT; postsegregational 95.3 0.014 4.8E-07 47.1 3.9 25 37-61 30-54 (253)
395 3b60_A Lipid A export ATP-bind 95.3 0.0094 3.2E-07 54.2 3.1 24 40-63 370-393 (582)
396 3iij_A Coilin-interacting nucl 95.2 0.011 3.7E-07 44.9 3.0 23 38-60 10-32 (180)
397 3b5x_A Lipid A export ATP-bind 95.2 0.01 3.4E-07 54.0 3.3 24 40-63 370-393 (582)
398 2pt5_A Shikimate kinase, SK; a 95.2 0.012 4.1E-07 43.9 3.2 21 41-61 2-22 (168)
399 2w0m_A SSO2452; RECA, SSPF, un 95.2 0.0087 3E-07 47.0 2.5 23 40-62 24-46 (235)
400 1via_A Shikimate kinase; struc 95.2 0.01 3.5E-07 44.8 2.8 21 41-61 6-26 (175)
401 2ze6_A Isopentenyl transferase 95.2 0.011 3.6E-07 47.9 3.0 21 41-61 3-23 (253)
402 3ozx_A RNAse L inhibitor; ATP 95.2 0.0099 3.4E-07 53.6 3.1 24 40-63 26-49 (538)
403 1e4v_A Adenylate kinase; trans 95.2 0.011 3.9E-07 46.2 3.1 21 40-60 1-21 (214)
404 1f2t_A RAD50 ABC-ATPase; DNA d 95.2 0.011 3.8E-07 43.8 2.8 20 41-60 25-44 (149)
405 2vli_A Antibiotic resistance p 95.1 0.009 3.1E-07 45.3 2.3 23 38-60 4-26 (183)
406 1lv7_A FTSH; alpha/beta domain 95.1 0.022 7.5E-07 45.8 4.7 24 39-62 45-68 (257)
407 3vfd_A Spastin; ATPase, microt 95.1 0.12 3.9E-06 44.4 9.5 25 38-62 147-171 (389)
408 2bwj_A Adenylate kinase 5; pho 95.1 0.013 4.6E-07 44.9 3.2 23 39-61 12-34 (199)
409 1ak2_A Adenylate kinase isoenz 95.1 0.015 5.3E-07 46.1 3.6 23 38-60 15-37 (233)
410 1iy2_A ATP-dependent metallopr 95.1 0.01 3.5E-07 48.5 2.6 23 41-63 75-97 (278)
411 3r20_A Cytidylate kinase; stru 95.0 0.014 4.8E-07 46.7 3.3 23 38-60 8-30 (233)
412 2obl_A ESCN; ATPase, hydrolase 95.0 0.01 3.6E-07 50.4 2.6 26 38-63 70-95 (347)
413 3j16_B RLI1P; ribosome recycli 95.0 0.012 4.2E-07 53.8 3.2 25 40-64 104-128 (608)
414 3bk7_A ABC transporter ATP-bin 95.0 0.013 4.5E-07 53.6 3.3 24 40-63 118-141 (607)
415 3pfi_A Holliday junction ATP-d 95.0 0.03 1E-06 46.9 5.3 38 25-62 41-78 (338)
416 3u61_B DNA polymerase accessor 95.0 0.64 2.2E-05 38.4 13.6 23 40-62 49-71 (324)
417 3euj_A Chromosome partition pr 95.0 0.01 3.6E-07 52.6 2.6 23 40-62 30-52 (483)
418 3qf4_B Uncharacterized ABC tra 95.0 0.0098 3.4E-07 54.3 2.5 24 40-63 382-405 (598)
419 2yl4_A ATP-binding cassette SU 95.0 0.0092 3.2E-07 54.4 2.3 24 40-63 371-394 (595)
420 2w58_A DNAI, primosome compone 95.0 0.041 1.4E-06 42.4 5.7 23 40-62 55-77 (202)
421 1njg_A DNA polymerase III subu 95.0 0.027 9.3E-07 43.9 4.8 24 39-62 45-68 (250)
422 4a82_A Cystic fibrosis transme 95.0 0.0088 3E-07 54.4 2.1 24 40-63 368-391 (578)
423 1qf9_A UMP/CMP kinase, protein 95.0 0.016 5.3E-07 44.1 3.2 22 39-60 6-27 (194)
424 3qf4_A ABC transporter, ATP-bi 94.9 0.011 3.6E-07 53.9 2.6 23 41-63 371-393 (587)
425 1cr0_A DNA primase/helicase; R 94.9 0.011 3.7E-07 48.8 2.3 23 40-62 36-58 (296)
426 3a4m_A L-seryl-tRNA(SEC) kinas 94.9 0.017 5.9E-07 46.8 3.5 23 39-61 4-26 (260)
427 1uj2_A Uridine-cytidine kinase 94.9 0.017 5.9E-07 46.5 3.4 25 37-61 20-44 (252)
428 2pbr_A DTMP kinase, thymidylat 94.9 0.016 5.6E-07 44.1 3.2 21 41-61 2-22 (195)
429 1e6c_A Shikimate kinase; phosp 94.9 0.016 5.3E-07 43.5 3.0 20 41-60 4-23 (173)
430 2z0h_A DTMP kinase, thymidylat 94.8 0.017 5.8E-07 44.2 3.2 21 41-61 2-22 (197)
431 2iyv_A Shikimate kinase, SK; t 94.8 0.014 4.7E-07 44.4 2.6 20 41-60 4-23 (184)
432 2xb4_A Adenylate kinase; ATP-b 94.8 0.018 6E-07 45.5 3.3 20 41-60 2-21 (223)
433 3bos_A Putative DNA replicatio 94.8 0.039 1.3E-06 43.3 5.3 25 38-62 51-75 (242)
434 3be4_A Adenylate kinase; malar 94.8 0.015 5.2E-07 45.6 2.9 22 39-60 5-26 (217)
435 3nwj_A ATSK2; P loop, shikimat 94.8 0.012 4.3E-07 47.5 2.3 23 39-61 48-70 (250)
436 2f6r_A COA synthase, bifunctio 94.8 0.02 6.7E-07 47.1 3.5 23 38-60 74-96 (281)
437 3cr8_A Sulfate adenylyltranfer 94.7 0.016 5.5E-07 52.3 3.2 26 38-63 368-393 (552)
438 4fcw_A Chaperone protein CLPB; 94.7 0.02 6.8E-07 47.2 3.5 23 40-62 48-70 (311)
439 1gtv_A TMK, thymidylate kinase 94.7 0.0074 2.5E-07 47.0 0.8 22 41-62 2-23 (214)
440 2cvh_A DNA repair and recombin 94.7 0.015 5E-07 45.4 2.5 23 39-61 20-42 (220)
441 1xjc_A MOBB protein homolog; s 94.7 0.019 6.5E-07 43.6 3.0 24 39-62 4-27 (169)
442 1zuh_A Shikimate kinase; alpha 94.7 0.02 6.9E-07 42.8 3.2 21 40-60 8-28 (168)
443 3ozx_A RNAse L inhibitor; ATP 94.7 0.018 6.1E-07 51.9 3.3 24 41-64 296-319 (538)
444 1m7g_A Adenylylsulfate kinase; 94.7 0.026 8.8E-07 44.1 3.9 25 38-62 24-48 (211)
445 2dpy_A FLII, flagellum-specifi 94.7 0.015 5E-07 51.1 2.6 26 38-63 156-181 (438)
446 2grj_A Dephospho-COA kinase; T 94.7 0.023 8E-07 44.0 3.5 25 37-61 10-34 (192)
447 2zan_A Vacuolar protein sortin 94.6 0.3 1E-05 42.7 11.0 25 38-62 166-190 (444)
448 4f4c_A Multidrug resistance pr 94.6 0.01 3.6E-07 59.0 1.7 23 41-63 1107-1129(1321)
449 1yqt_A RNAse L inhibitor; ATP- 94.6 0.02 6.7E-07 51.6 3.4 24 41-64 314-337 (538)
450 2bjv_A PSP operon transcriptio 94.6 0.039 1.3E-06 44.5 4.9 25 38-62 28-52 (265)
451 2chg_A Replication factor C sm 94.5 0.042 1.5E-06 42.3 4.8 22 41-62 40-61 (226)
452 1n0w_A DNA repair protein RAD5 94.5 0.017 5.9E-07 45.7 2.6 24 39-62 24-47 (243)
453 3bk7_A ABC transporter ATP-bin 94.5 0.021 7.3E-07 52.2 3.4 23 41-63 384-406 (607)
454 3a8t_A Adenylate isopentenyltr 94.4 0.03 1E-06 47.3 3.9 24 39-62 40-63 (339)
455 2qmh_A HPR kinase/phosphorylas 94.4 0.022 7.4E-07 44.5 2.8 25 38-62 33-57 (205)
456 1hqc_A RUVB; extended AAA-ATPa 94.4 0.031 1E-06 46.4 4.0 38 24-61 23-60 (324)
457 3sr0_A Adenylate kinase; phosp 94.4 0.026 8.9E-07 44.2 3.3 21 41-61 2-22 (206)
458 2qby_A CDC6 homolog 1, cell di 94.3 0.037 1.3E-06 46.7 4.2 26 37-62 43-68 (386)
459 1ltq_A Polynucleotide kinase; 94.2 0.03 1E-06 46.1 3.4 22 40-61 3-24 (301)
460 3j16_B RLI1P; ribosome recycli 94.2 0.027 9.3E-07 51.4 3.4 23 42-64 381-403 (608)
461 3uk6_A RUVB-like 2; hexameric 94.1 0.07 2.4E-06 45.1 5.7 23 39-61 70-92 (368)
462 3syl_A Protein CBBX; photosynt 94.1 0.074 2.5E-06 43.7 5.6 26 37-62 65-90 (309)
463 3qks_A DNA double-strand break 94.0 0.031 1.1E-06 43.6 3.0 20 41-60 25-44 (203)
464 1q3t_A Cytidylate kinase; nucl 94.0 0.031 1E-06 44.5 3.1 24 38-61 15-38 (236)
465 4eaq_A DTMP kinase, thymidylat 94.0 0.04 1.4E-06 43.8 3.7 24 38-61 25-48 (229)
466 1bif_A 6-phosphofructo-2-kinas 93.9 0.036 1.2E-06 49.0 3.6 25 38-62 38-62 (469)
467 1nlf_A Regulatory protein REPA 93.9 0.025 8.6E-07 46.2 2.3 22 40-61 31-52 (279)
468 4f4c_A Multidrug resistance pr 93.9 0.028 9.7E-07 56.0 3.1 24 40-63 445-468 (1321)
469 1d2n_A N-ethylmaleimide-sensit 93.9 0.078 2.7E-06 42.9 5.3 26 37-62 62-87 (272)
470 1ojl_A Transcriptional regulat 93.9 0.062 2.1E-06 44.6 4.7 25 37-61 23-47 (304)
471 1sxj_C Activator 1 40 kDa subu 93.8 0.061 2.1E-06 45.1 4.7 22 41-62 48-69 (340)
472 3t15_A Ribulose bisphosphate c 93.8 0.039 1.3E-06 45.5 3.4 25 38-62 35-59 (293)
473 3crm_A TRNA delta(2)-isopenten 93.8 0.04 1.4E-06 46.3 3.4 23 40-62 6-28 (323)
474 2iw3_A Elongation factor 3A; a 93.8 0.021 7.2E-07 54.9 1.9 23 41-63 701-723 (986)
475 3exa_A TRNA delta(2)-isopenten 93.8 0.043 1.5E-06 45.9 3.6 24 39-62 3-26 (322)
476 3g5u_A MCG1178, multidrug resi 93.7 0.031 1E-06 55.6 2.9 24 40-63 417-440 (1284)
477 1tue_A Replication protein E1; 93.7 0.056 1.9E-06 42.4 3.9 22 40-61 59-80 (212)
478 3cf2_A TER ATPase, transitiona 93.7 0.32 1.1E-05 45.8 9.6 26 38-63 237-262 (806)
479 3h2y_A GTPase family protein; 93.7 0.2 6.9E-06 42.7 7.7 54 106-169 58-111 (368)
480 2c9o_A RUVB-like 1; hexameric 93.7 0.099 3.4E-06 45.9 5.9 37 25-61 49-85 (456)
481 3umf_A Adenylate kinase; rossm 93.6 0.057 1.9E-06 42.7 3.8 24 38-61 28-51 (217)
482 2vhj_A Ntpase P4, P4; non- hyd 93.6 0.09 3.1E-06 44.1 5.2 21 41-61 125-145 (331)
483 3eie_A Vacuolar protein sortin 93.6 0.07 2.4E-06 44.5 4.6 25 38-62 50-74 (322)
484 3ake_A Cytidylate kinase; CMP 93.5 0.046 1.6E-06 42.1 3.1 21 41-61 4-24 (208)
485 3te6_A Regulatory protein SIR3 93.5 0.074 2.5E-06 44.5 4.6 27 36-62 42-68 (318)
486 1qhl_A Protein (cell division 93.5 0.01 3.4E-07 47.4 -0.8 21 43-63 31-51 (227)
487 4aby_A DNA repair protein RECN 93.5 0.012 4.2E-07 50.8 -0.3 20 41-60 62-81 (415)
488 3la6_A Tyrosine-protein kinase 93.5 2.4 8.1E-05 34.6 13.6 65 88-167 203-267 (286)
489 3d3q_A TRNA delta(2)-isopenten 93.4 0.042 1.5E-06 46.4 3.0 22 40-61 8-29 (340)
490 3foz_A TRNA delta(2)-isopenten 93.4 0.06 2.1E-06 44.9 3.8 24 39-62 10-33 (316)
491 1qvr_A CLPB protein; coiled co 93.4 0.43 1.5E-05 45.3 10.2 25 38-62 190-214 (854)
492 3cf0_A Transitional endoplasmi 93.3 0.046 1.6E-06 45.2 3.0 25 38-62 48-72 (301)
493 2ocp_A DGK, deoxyguanosine kin 93.3 0.056 1.9E-06 43.0 3.4 23 39-61 2-24 (241)
494 2xtz_A Guanine nucleotide-bind 93.3 0.051 1.7E-06 46.2 3.3 25 36-60 6-30 (354)
495 1ko7_A HPR kinase/phosphatase; 93.3 0.039 1.3E-06 46.1 2.5 24 39-62 144-167 (314)
496 1g8f_A Sulfate adenylyltransfe 93.2 0.052 1.8E-06 48.5 3.3 26 36-61 392-417 (511)
497 1l8q_A Chromosomal replication 93.2 0.092 3.1E-06 43.7 4.7 25 38-62 36-60 (324)
498 2qby_B CDC6 homolog 3, cell di 93.2 0.13 4.4E-06 43.5 5.7 26 37-62 43-68 (384)
499 3zvl_A Bifunctional polynucleo 93.2 0.061 2.1E-06 46.8 3.6 25 38-62 257-281 (416)
500 3tqf_A HPR(Ser) kinase; transf 93.1 0.051 1.8E-06 41.4 2.8 24 39-62 16-39 (181)
No 1
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=100.00 E-value=1.3e-33 Score=234.60 Aligned_cols=231 Identities=61% Similarity=0.989 Sum_probs=196.2
Q ss_pred chhhhcccccCChhhHHHHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC
Q 026113 7 VIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG 86 (243)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~ 86 (243)
+.++|.++.+++...+..+.+..+++.....++++|+++|.+|+|||||+|+|++...+.+...+++|.........+.+
T Consensus 4 ~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~ 83 (262)
T 3def_A 4 LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG 83 (262)
T ss_dssp --CBCHHHHTSCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT
T ss_pred chhhHHHHhhccHHHHHHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC
Confidence 56899999999999999999998888887778999999999999999999999999876677777777777777778899
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (243)
Q Consensus 87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 166 (243)
..+.+|||||+.+.....+...+.+.+++..+++|++|+|++++..+++..+..+++.+.+.++...++|+++|+||+|+
T Consensus 84 ~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl 163 (262)
T 3def_A 84 FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQF 163 (262)
T ss_dssp EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTC
T ss_pred eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCccc
Confidence 99999999999988777778888888888778999999999998767778888999999999998888899999999999
Q ss_pred CCCCCCCHHHHHHhhhHHHHHHHccccCCccccccCCCccchhhhcCCCCCCCcCccccccCCCCCccceecc
Q 026113 167 SLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNRIQCCFPR 239 (243)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~lp~~~~w~~~~~ 239 (243)
.+++...++++++...+.++++++.+.+......+...+|..+++|.+.|..|...+.. ||++.+|+..+-
T Consensus 164 ~~~~~~~~e~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~pv~~ve~~~~~~~n~~g~~~--lp~~~~w~~~~~ 234 (262)
T 3def_A 164 SPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKA--LPNGEAWIPNLV 234 (262)
T ss_dssp CCSTTCCHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCCEEEECCCCTTCCBCTTSCBB--CTTSCBSCC-CH
T ss_pred CCCCCccHHHHHHhhhHHHHHHHHHHhCccccccccccCCEEEEeCCCCCCCCCCCCeE--CCCCCeeHHHHH
Confidence 77777889999988777899998876654433222234788889999999999999988 999999998764
No 2
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=100.00 E-value=3.6e-33 Score=232.86 Aligned_cols=231 Identities=71% Similarity=1.084 Sum_probs=193.3
Q ss_pred cccc--chhhhcccccCChhhHHHHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEE
Q 026113 3 MASQ--VIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV 80 (243)
Q Consensus 3 ~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~ 80 (243)
|+++ +.++|.|...++.+..+.+.+.+.+....+...++|+++|.+|+|||||+|+|++.....++..++++......
T Consensus 1 m~~~~~~~~~~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~ 80 (270)
T 1h65_A 1 MASQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMV 80 (270)
T ss_dssp -------CEECGGGGGSCHHHHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEE
T ss_pred CCcchhhhhhhcchhhccHHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEE
Confidence 5665 88999999999999999999999888877777899999999999999999999998866666666667666666
Q ss_pred EeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEE
Q 026113 81 SRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV 160 (243)
Q Consensus 81 ~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV 160 (243)
.....+..+.+|||||+.+.........+.+.+++...++|++|||++++..+++..+..+++.+.+.++...+.|+++|
T Consensus 81 ~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV 160 (270)
T 1h65_A 81 SRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVA 160 (270)
T ss_dssp EEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred EEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEE
Confidence 77788999999999999887766666666777776667899999999998766777888999999999998878899999
Q ss_pred EeCCCCCCCCCCCHHHHHHhhhHHHHHHHccccCCccccccCCCccchhhhcCCCCCCCcCccccccCCCCCccce
Q 026113 161 LTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVSQLPDNRIQCC 236 (243)
Q Consensus 161 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~lp~~~~w~~ 236 (243)
+||+|+.+++..+++++.+...+.+++.++++.++.... +...+|.+++++.+.|+++...+++ +|...+|..
T Consensus 161 ~nK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~p~~~v~~~~~~~~~~~~~~v--~~~~~~w~~ 233 (270)
T 1h65_A 161 LTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDA-QASDIPVVLIENSGRCNKNDSDEKV--LPNGIAWIP 233 (270)
T ss_dssp EECCSCCCGGGCCHHHHHHHHHHHHHHHHHHHTTCCTTS-GGGCCCEEECCCCTTCCBCTTSCBB--CTTSCBHHH
T ss_pred EECcccCCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhhh-hhccCCEEEEeCCCcccccCCCceE--CCCCCCcHH
Confidence 999999866777899999887888998888777765432 2346899999999999999998888 999999974
No 3
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.92 E-value=2.7e-24 Score=175.83 Aligned_cols=184 Identities=24% Similarity=0.274 Sum_probs=121.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC--CCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ--SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...++|+++|.+|+|||||+|+|+|...+. ...+ +.|..+......+.+..+.||||||+.+......+..+.+.++
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFH-SGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSC-C-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCc-cCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 367999999999999999999999988633 3333 4566677777788999999999999998776666666666665
Q ss_pred H--hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHHHhhhHHHHHHHccc
Q 026113 115 L--LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPS 192 (243)
Q Consensus 115 ~--~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~ 192 (243)
+ ..+++|++|+|++++ +++..+..+++.+.+.++...+.|+++|+||+|+. +...+++++....+.++++++.+
T Consensus 106 ~~~~~~~~~~~l~v~d~~--~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~--~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLG--RYTEEEHKATEKILKMFGERARSFMILIFTRKDDL--GDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHTTTCCSEEEEEEETT--CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--------------CHHHHHHHHHH
T ss_pred HHhcCCCCcEEEEEeeCC--CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccC--CcccHHHHHHhchHHHHHHHHHc
Confidence 4 346899999998876 56677889999999999877778999999999986 33457777776667788888775
Q ss_pred c-CCccccc---------c----CCCccchhhhcCCCCCCCcCcccc
Q 026113 193 T-WMKKKDI---------Q----GSFVPVVLVENSGRCAKNENDEKV 225 (243)
Q Consensus 193 ~-~~~~~~~---------~----~~~i~~~~~~~~~~~~~~~~~~~~ 225 (243)
+ ++..... + ...|..++.+|++.+|++.+++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~ 228 (239)
T 3lxx_A 182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRA 228 (239)
T ss_dssp SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCTTSCC--------
T ss_pred CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Confidence 3 4432211 1 135667778899999999887655
No 4
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.91 E-value=1.2e-23 Score=172.99 Aligned_cols=184 Identities=23% Similarity=0.258 Sum_probs=134.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC-CCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc-HHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ-SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN-YHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~-~~~~~~~~~~ 114 (243)
..+++|+|+|.+|+|||||+|+|+|...+.....+ ++|..+......+.+..+.||||||+.+..... ++....+.++
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 46899999999999999999999999875544322 356667777788899999999999998654432 2333344443
Q ss_pred H--hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccc-ccEEEEEeCCCCCCCCCCCHHHHHHhh-hHHHHHHHc
Q 026113 115 L--LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIW-KRALIVLTHAQLSLPDRLDYEVFCSKR-SEALLKFVS 190 (243)
Q Consensus 115 ~--~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~-~~~ivV~tk~D~~~~~~~~~~~~~~~~-~~~l~~~i~ 190 (243)
+ ..+++|++|+|++++ +++..+..+++++.+.|+...+ .|+++|+||+|+. ..++++++... .+.++++++
T Consensus 99 ~~~~~~~~d~il~V~d~~--~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~---~~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLG--RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLA---GGSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHTTCCSEEEEEEETT--BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT---TCCHHHHHHHCCCHHHHHHHH
T ss_pred HHhcCCCCCEEEEEEeCC--CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcC---CCCHHHHHhhcccHHHHHHHH
Confidence 3 347999999998876 5788888999999999986533 5788999999984 24678887653 467899998
Q ss_pred ccc-CCccccc---------c----CCCccchhhhcCCCCCCCcCcccc
Q 026113 191 PST-WMKKKDI---------Q----GSFVPVVLVENSGRCAKNENDEKV 225 (243)
Q Consensus 191 ~~~-~~~~~~~---------~----~~~i~~~~~~~~~~~~~~~~~~~~ 225 (243)
.++ ++..... + ...|..++.+|++.+|++.+++.+
T Consensus 174 ~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~~~~ 222 (247)
T 3lxw_A 174 ECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSNEVYELA 222 (247)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHH
T ss_pred HcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 754 4532211 1 146788888999999999988765
No 5
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.83 E-value=4.3e-19 Score=146.55 Aligned_cols=151 Identities=23% Similarity=0.274 Sum_probs=111.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC-CCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-EGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
...++|+++|.+|+|||||+|+|++...+.....+. +|..+......+.+..+.||||||+.+.........+.+.+++
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 367999999999999999999999988655544443 5666666677788999999999999877655555443444332
Q ss_pred --hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEe-CCCCCCCCCCCHHHHHHhh-hHHHHHHHcc
Q 026113 116 --LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT-HAQLSLPDRLDYEVFCSKR-SEALLKFVSP 191 (243)
Q Consensus 116 --~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~t-k~D~~~~~~~~~~~~~~~~-~~~l~~~i~~ 191 (243)
..+++|++|+|++++ ++...+..+++++.+.++.....|.++|+| |+|+.. ..+..++... .+.++++++.
T Consensus 100 ~~~~~~~d~il~V~d~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~---~~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLG--RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG---GSLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHTTCCSEEEEEEETT--CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHHHH
T ss_pred HhcCCCCcEEEEEEeCC--CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC---ccHHHHHHhcchHHHHHHHHH
Confidence 237899999998876 467777788889999888766678888888 999852 2466655432 2455666655
Q ss_pred c
Q 026113 192 S 192 (243)
Q Consensus 192 ~ 192 (243)
+
T Consensus 175 ~ 175 (260)
T 2xtp_A 175 C 175 (260)
T ss_dssp T
T ss_pred h
Confidence 4
No 6
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.75 E-value=2.8e-17 Score=138.69 Aligned_cols=124 Identities=21% Similarity=0.216 Sum_probs=88.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLL 116 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~-~~~~~~~~~~ 116 (243)
+..+|+++|.+|+|||||+|+|+|.....++..+.+|...........+.++.+|||||+.++...-.+ .......++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l- 84 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL- 84 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT-
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH-
Confidence 457899999999999999999999987666666666766655555677889999999999865432112 122222233
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++|+|++++. ..+..+..+++.+.+.++ ..|+++|+||+|+.
T Consensus 85 -~~ad~il~VvD~~~-~~~~~~~~i~~~l~~~~~---~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 85 -ADVNAVVWVVDLRH-PPTPEDELVARALKPLVG---KVPILLVGNKLDAA 130 (301)
T ss_dssp -SSCSEEEEEEETTS-CCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGC
T ss_pred -hcCCEEEEEEECCC-CCChHHHHHHHHHHhhcC---CCCEEEEEECcccC
Confidence 68999999988764 255555544455544321 36999999999985
No 7
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.75 E-value=1.7e-17 Score=133.35 Aligned_cols=124 Identities=19% Similarity=0.171 Sum_probs=89.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC-cccccCCCCCCCeeEEEEee-eCCeEEEEEeCCCCCCCCCCcH---HHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVNY---HAIQLIK 112 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~-~~~~~~~~~~t~~~~~~~~~-~~~~~~~viDTPG~~~~~~~~~---~~~~~~~ 112 (243)
..++|+++|.+|+|||||+|+|++.. ...+...+++|......... ..+..+.+|||||+.+...... .+...+.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 56899999999999999999999987 44556666666655544444 5577899999999876543332 2233334
Q ss_pred HHHh-cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 113 RFLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 113 ~~~~-~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++. ...+|++++|++... .++..+..+++++.. ...|+++|+||+|+.
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~l~~-----~~~p~i~v~nK~Dl~ 157 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARR-PLTELDRRMIEWFAP-----TGKPIHSLLTKCDKL 157 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHGG-----GCCCEEEEEECGGGS
T ss_pred HHHhcCcCcCEEEEEEeCCC-CCCHHHHHHHHHHHh-----cCCCEEEEEeccccC
Confidence 4442 356899999977754 356667777666654 236999999999986
No 8
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.75 E-value=1.5e-17 Score=128.88 Aligned_cols=125 Identities=18% Similarity=0.219 Sum_probs=86.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLL 116 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~-~~~~~~~~~~ 116 (243)
+..+|+++|.+|+|||||+|+|++.....+...++++.........+++..+.+|||||+.+.....+. .......++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~- 81 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI- 81 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH-
Confidence 468999999999999999999999875445566666666666666778889999999999654321111 111111122
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|+++.... +..+..++..+.+.... ..|+++|+||+|+.
T Consensus 82 -~~ad~~i~v~D~~~~~-s~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 82 -EQADRVLFMVDGTTTD-AVDPAEIWPEFIARLPA--KLPITVVRNKADIT 128 (172)
T ss_dssp -HTCSEEEEEEETTTCC-CCSHHHHCHHHHHHSCT--TCCEEEEEECHHHH
T ss_pred -HhCCEEEEEEECCCCC-CHHHHHHHHHHHHhccc--CCCEEEEEECccCC
Confidence 4899999998875432 22355666666655432 36999999999984
No 9
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.75 E-value=4.5e-17 Score=123.83 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=80.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~ 119 (243)
.+|+++|.+|+|||||+|++++.........++.+...........+..+.+|||||+................++ ..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRAL--ED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHT--TT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHH--Hh
Confidence 5899999999999999999998875444555555656666667778889999999999765433333333333333 58
Q ss_pred CcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 120 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+|++++|++... ..+..+..+.+++.. ...|+++|+||+|+.
T Consensus 80 ~~~~i~v~d~~~-~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 80 AEVVLFAVDGRA-ELTQADYEVAEYLRR-----KGKPVILVATKVDDP 121 (161)
T ss_dssp CSEEEEEEESSS-CCCHHHHHHHHHHHH-----HTCCEEEEEECCCSG
T ss_pred CCEEEEEEECCC-cccHhHHHHHHHHHh-----cCCCEEEEEECcccc
Confidence 999999988764 245555555555544 136999999999985
No 10
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.74 E-value=2.5e-17 Score=137.23 Aligned_cols=124 Identities=20% Similarity=0.277 Sum_probs=78.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccC-------CCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcH---
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVST-------FQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNY--- 105 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~-------~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~--- 105 (243)
..++|+++|.+|+|||||+|+|++...+.... .++.+..........++. .+.+|||||+++......
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 46999999999999999999999988655432 222333333344444553 899999999976533221
Q ss_pred HHHHH----HHHHHh-----------cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 106 HAIQL----IKRFLL-----------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 106 ~~~~~----~~~~~~-----------~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
....+ +..++. ...+|++++++......+...+..+++.+.. ..|+++|+||+|+.
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTL 157 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGS
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCC
Confidence 11111 122221 2358899999655443467777776666654 37999999999985
No 11
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.73 E-value=9.3e-17 Score=129.92 Aligned_cols=135 Identities=21% Similarity=0.240 Sum_probs=84.1
Q ss_pred hhhcCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH--HHH
Q 026113 32 LKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH--AIQ 109 (243)
Q Consensus 32 ~~~~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~--~~~ 109 (243)
++......++|+++|.+|+|||||+|+|++.... +...+.+|...........+..+.+|||||+.+....... ...
T Consensus 22 ~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 100 (228)
T 2qu8_A 22 LPSINPHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMT 100 (228)
T ss_dssp CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHH
Confidence 3333346799999999999999999999998753 4445555555555555667889999999999754322211 112
Q ss_pred HHHHHHhcCCCcEEEEEEeCCCcc-cC-hhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCC
Q 026113 110 LIKRFLLNKTIDVLLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 172 (243)
Q Consensus 110 ~~~~~~~~~~~~~il~v~~~d~~~-~~-~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~ 172 (243)
.+..+. ..+|++|+|++++... +. .....++..+...+ ...|+++|+||+|+.+.+..
T Consensus 101 ~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~---~~~piilv~nK~Dl~~~~~~ 160 (228)
T 2qu8_A 101 TITALA--HINGVILFIIDISEQCGLTIKEQINLFYSIKSVF---SNKSIVIGFNKIDKCNMDSL 160 (228)
T ss_dssp HHHHHH--TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC--CC
T ss_pred HHHHhh--ccccEEEEEEecccccCcchHHHHHHHHHHHHhh---cCCcEEEEEeCcccCCchhh
Confidence 223222 5789999998886432 32 12234444443322 13799999999999754443
No 12
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.72 E-value=6e-17 Score=130.36 Aligned_cols=128 Identities=13% Similarity=0.107 Sum_probs=85.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
+.+||+|+|.+|+|||||++.+++... .....++.+.+.........+ ..+.||||+|+........ .++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f-~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~---~~~---- 83 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP---SYI---- 83 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC-C----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH---HHH----
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCC-CCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH---HHh----
Confidence 568999999999999999999997652 222223333333333334444 4788999999965533222 122
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~ 177 (243)
.+++++++|++++.....+....|+..+....+.+ .|+++|+||+|+.+.+..+.++.
T Consensus 84 --~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~r~V~~~e~ 141 (216)
T 4dkx_A 84 --RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEG 141 (216)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGGCCSCHHHH
T ss_pred --ccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhcCcccHHHH
Confidence 59999999999976544455667888887776654 59999999999976666666544
No 13
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.72 E-value=1.1e-16 Score=123.78 Aligned_cols=124 Identities=17% Similarity=0.104 Sum_probs=83.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...++|+++|.+|+|||||+|++++.... ....++.+...........+ ..+.+|||||..+....... .+
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---~~--- 79 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITST---YY--- 79 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGG---GG---
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHH---Hh---
Confidence 35699999999999999999999988743 33334444444445555666 57999999997544333221 11
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
..+|++++|++++..........++..+..... ..|+++|+||+|+.+.+...
T Consensus 80 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~ 132 (181)
T 3tw8_B 80 ---RGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPERKVVE 132 (181)
T ss_dssp ---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGGCCSC
T ss_pred ---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchhcccC
Confidence 589999999888653322333455655655432 36999999999986444443
No 14
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.71 E-value=1.4e-16 Score=134.83 Aligned_cols=123 Identities=21% Similarity=0.299 Sum_probs=90.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCCCc---HHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVN---YHAIQLIK 112 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~viDTPG~~~~~~~~---~~~~~~~~ 112 (243)
..+-.|+++|.+|+|||||+|+|+|.....++..+.+|........... +.++.+|||||+.+..... +.......
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 4678999999999999999999999987767777777877777777777 8899999999998765211 22222333
Q ss_pred HHHhcCCCcEEEEEEeCCCcccChhHHHH-HHHHHHHhcccccccEEEEEeCCCCC
Q 026113 113 RFLLNKTIDVLLYVDRLDVYRVDNLDKQI-TRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 113 ~~~~~~~~~~il~v~~~d~~~~~~~~~~~-l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++ ..+|++++|++++.. .+..+... ++.+.. ...|+++|+||+|+.
T Consensus 88 ~~l--~~aD~il~VvD~~~~-~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 88 QSL--EEADVILFMIDATEG-WRPRDEEIYQNFIKP-----LNKPVIVVINKIDKI 135 (308)
T ss_dssp HHH--HHCSEEEEEEETTTB-SCHHHHHHHHHHTGG-----GCCCEEEEEECGGGS
T ss_pred HHh--hcCCEEEEEEeCCCC-CCchhHHHHHHHHHh-----cCCCEEEEEECccCC
Confidence 333 489999999887642 34444433 444443 236999999999985
No 15
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.71 E-value=1.8e-16 Score=124.57 Aligned_cols=127 Identities=21% Similarity=0.186 Sum_probs=86.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...++|+++|.+|+|||||+|+|++... .....+..+..........++ ..+.+|||||........ ...+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---~~~~--- 86 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT---SSYY--- 86 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTH---HHHH---
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhH---HHHH---
Confidence 3569999999999999999999998764 233334444444444555666 579999999975433221 1122
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
..+|++++|++++.....+....++..+...... ..|+++|+||+|+.+.+....+
T Consensus 87 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~ 142 (196)
T 3tkl_A 87 ---RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTKKVVDYT 142 (196)
T ss_dssp ---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHH
T ss_pred ---hhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccccccCHH
Confidence 4899999998886533223445566666665443 3699999999999755554443
No 16
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=1.1e-16 Score=123.97 Aligned_cols=127 Identities=11% Similarity=0.067 Sum_probs=81.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...++|+++|.+|+|||||+|++++.........++.+..........++. .+.+|||||..+... ....+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~ 80 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS-------VTHAY 80 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHH-------HHHHH
Confidence 467999999999999999999999877433333344444433333445554 789999999753221 11112
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~ 174 (243)
+ ..+|++++|++++.....+....++..+...... ..|+++|+||+|+.+.+....
T Consensus 81 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~ 136 (180)
T 2g6b_A 81 Y--RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH--DVALMLLGNKVDSAHERVVKR 136 (180)
T ss_dssp G--GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECCSTTSCCCSCH
T ss_pred c--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccCcccccCH
Confidence 2 4789999998886533223345566666665432 369999999999975444443
No 17
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.71 E-value=3.7e-16 Score=119.17 Aligned_cols=126 Identities=16% Similarity=0.179 Sum_probs=79.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
++++|+++|.+|+|||||+|++++... .....+++...........+ ..+.+|||||..+. ... ...++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---~~~----~~~~~ 73 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY---AAI----RDNYF 73 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C---HHH----HHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh---HHH----HHHHh
Confidence 579999999999999999999998763 22222333333333344555 47999999997532 111 12222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+.+..+.+
T Consensus 74 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~ 130 (168)
T 1u8z_A 74 --RSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVE 130 (168)
T ss_dssp --HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHH
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccCccCHH
Confidence 3789999998886543223345566666655432 13699999999998644444433
No 18
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.71 E-value=2.8e-16 Score=122.00 Aligned_cols=126 Identities=20% Similarity=0.242 Sum_probs=82.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
+.++|+++|.+|+|||||+|++++... .....+++..........++ ..+.+|||||..+....... .+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~---~~---- 75 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF--VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQT---YS---- 75 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGG---GT----
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHH---HH----
Confidence 579999999999999999999996652 23333333333344445566 46799999998765433321 11
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
..+|++++|++++.....+....++..+.+.... ...|+++|+||+|+.+.+..+.+
T Consensus 76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~ 132 (181)
T 3t5g_A 76 --IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVISYE 132 (181)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHH
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcceecHH
Confidence 4899999998886533223344555555554432 23699999999999655554444
No 19
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.70 E-value=1.7e-16 Score=132.19 Aligned_cols=122 Identities=17% Similarity=0.222 Sum_probs=88.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRF 114 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~---~~~~~~~~~~ 114 (243)
+.++|+++|.+|+|||||+|+|+|.. +.++..++.|...........+..+.+|||||+.+..... .......+.+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 46899999999999999999999998 4677778888877777777788899999999998765211 0111123334
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
+....+|++++|++... . +....+...+.+. ..|+++|+||+|+.+
T Consensus 81 ~~~~~~d~ii~VvD~~~--~-~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 81 ILSGDADLLINVVDASN--L-ERNLYLTLQLLEL-----GIPCIVALNMLDIAE 126 (274)
T ss_dssp HHHTCCSEEEEEEEGGG--H-HHHHHHHHHHHHH-----TCCEEEEEECHHHHH
T ss_pred HhhcCCCEEEEEecCCC--h-HHHHHHHHHHHhc-----CCCEEEEEECccchh
Confidence 44479999999966543 2 3334444444443 369999999999853
No 20
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.70 E-value=5.1e-16 Score=118.29 Aligned_cols=124 Identities=17% Similarity=0.096 Sum_probs=78.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
++++|+++|.+|+|||||+|++++..... ...+++...........+. .+.+|||||..+.. ......+
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---~~~~~~~---- 72 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA---SMRDLYI---- 72 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---HHHHHHH----
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH---HHHHHHh----
Confidence 46899999999999999999999776322 2222222333334445554 58999999975431 1111222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
..+|++++|+++......+....++..+.+.... ...|+++|+||+|+.+.+...
T Consensus 73 --~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~ 127 (167)
T 1kao_A 73 --KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREVS 127 (167)
T ss_dssp --HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGCCSC
T ss_pred --ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCcccccccCC
Confidence 3789999998886532223344455555554332 237999999999986444443
No 21
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.6e-16 Score=121.76 Aligned_cols=125 Identities=22% Similarity=0.122 Sum_probs=78.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
+.++|+++|.+|+|||||+|++++.... ....++.. ..........+ ..+.+|||||..+.. ......+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---~~~~~~~---- 72 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFR-ESYIPTVE-DTYRQVISCDKSICTLQITDTTGSHQFP---AMQRLSI---- 72 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCC-SSCCCCSC-EEEEEEEEETTEEEEEEEEECCSCSSCH---HHHHHHH----
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCcc-ccEEEEEEECCEEEEEEEEECCCchhhH---HHHHHhc----
Confidence 4689999999999999999999987632 11122211 22222223333 478999999985432 2222222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
..+|++++|++++.....+....++..+.+..+.....|+++|+||+|+.+.+...
T Consensus 73 --~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~ 128 (172)
T 2erx_A 73 --SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQ 128 (172)
T ss_dssp --HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSC
T ss_pred --ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccC
Confidence 26899999988865332233445566666554322347999999999986444443
No 22
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.70 E-value=6e-16 Score=120.61 Aligned_cols=119 Identities=19% Similarity=0.154 Sum_probs=78.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
.++++|+++|.+|+|||||+|+|++... ....++++..........++. .+.+|||||..+...... ..+
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---~~~--- 73 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD---QYM--- 73 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHH---HHH---
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHH---HHH---
Confidence 3579999999999999999999998763 233333344444444455665 477899999865443322 122
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+|++++|++++.....+....++..+...... ...|+++|+||+|+.
T Consensus 74 ---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 74 ---RTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS-EDVPMVLVGNKCDLP 122 (189)
T ss_dssp ---HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTSS
T ss_pred ---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccCc
Confidence 2689999998887543223344556556554332 237999999999986
No 23
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.70 E-value=2e-16 Score=121.84 Aligned_cols=128 Identities=15% Similarity=0.084 Sum_probs=74.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||+|++++.........+ +.+........++. .+.+|||||...... ..+...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~- 73 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQL--GEDVYERTLTVDGEDTTLVVVDTWEAEKLDK------SWSQES- 73 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCS--SSSEEEEEEEETTEEEEEEEECCC-------------CHHHHH-
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCcc--ccceeEEEEEECCEEEEEEEEecCCCCccch------hhhHHh-
Confidence 5799999999999999999999988754333322 22223333445554 788999999854210 111111
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
....+|++++|++++.....+....++..+..... ....|+++|+||+|+.+.+..+.+
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~ 132 (175)
T 2nzj_A 74 CLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVE 132 (175)
T ss_dssp TTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHH
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHH
Confidence 12578999999888753322233345555544321 123699999999999755444443
No 24
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.70 E-value=2.6e-16 Score=139.46 Aligned_cols=120 Identities=20% Similarity=0.312 Sum_probs=79.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC--CCcHHHHHHHHHHHhc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG--YVNYHAIQLIKRFLLN 117 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~--~~~~~~~~~~~~~~~~ 117 (243)
.+|+++|++|+|||||+|.|++...+.+.+.++.|.+.......+.+..+.+|||||+.... .......+....++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~-- 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI-- 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH--
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHH--
Confidence 37999999999999999999999876677888888887777888999999999999997432 12223333333333
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++|+|++... ..+..+..+.+++++. .+|+++|+||+|+.
T Consensus 80 ~~ad~il~V~D~~~-~~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 80 READLVLFVVDGKR-GITKEDESLADFLRKS-----TVDTILVANKAENL 123 (439)
T ss_dssp TTCSEEEEEEETTT-CCCHHHHHHHHHHHHH-----TCCEEEEEESCCSH
T ss_pred HhCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCc
Confidence 59999999977653 3556665555555542 36999999999974
No 25
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.70 E-value=4.6e-16 Score=118.90 Aligned_cols=122 Identities=15% Similarity=0.043 Sum_probs=81.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||+|++++... .....++.+.+........++ ..+.+|||||..+....... .+
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~---~~---- 75 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKA---YY---- 75 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC-CCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHH---HH----
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHH---Hh----
Confidence 579999999999999999999998763 222223333333344444454 47999999997654333221 22
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 172 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~ 172 (243)
..+|++++|++++.....+....++..+.... ...|+++|+||+|+.+.+..
T Consensus 76 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~ 127 (168)
T 1z2a_A 76 --RGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDSCI 127 (168)
T ss_dssp --TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGCSS
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCccccc
Confidence 48999999988865332233445666665544 23699999999998644333
No 26
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.70 E-value=2.1e-16 Score=122.00 Aligned_cols=126 Identities=14% Similarity=0.097 Sum_probs=82.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
++++|+++|.+|+|||||+|++++.... ....++.+.+........++ ..+.+|||||..+..... ...+
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~---~~~~---- 84 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI---PSYI---- 84 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGS---HHHH----
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHH---HHHh----
Confidence 5699999999999999999999977632 22233333334444445555 479999999975432221 1222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
.++|++++|++++.....+....++..+....+. ..|+++|+||+|+.+.+....+
T Consensus 85 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~ 140 (179)
T 2y8e_A 85 --RDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS--DVIIMLVGNKTDLSDKRQVSTE 140 (179)
T ss_dssp --HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECGGGGGGCCSCHH
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccccCcCCHH
Confidence 3899999998886533223345566666655433 3689999999998654444433
No 27
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.70 E-value=6.5e-16 Score=121.32 Aligned_cols=122 Identities=20% Similarity=0.185 Sum_probs=75.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH---HHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY---HAIQLIKR 113 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~---~~~~~~~~ 113 (243)
..++|+++|.+|+|||||+|+|++.. .......++.|....... . +..+.+|||||+.+...... ........
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I-NDELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E-CCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 57999999999999999999999886 223333333343333222 2 34799999999876654332 22222333
Q ss_pred HHh-cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 114 FLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 114 ~~~-~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
++. ...+|++++|+++.. ..+..+..+++++.. ...|+++|+||+|+.+
T Consensus 99 ~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRH-APSNDDVQMYEFLKY-----YGIPVIVIATKADKIP 148 (195)
T ss_dssp HHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSC
T ss_pred HHhhhhcCCEEEEEEECCC-CCCHHHHHHHHHHHH-----cCCCEEEEEECcccCC
Confidence 332 245699999988754 245555555555554 2369999999999863
No 28
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.70 E-value=6.4e-16 Score=120.15 Aligned_cols=126 Identities=15% Similarity=0.179 Sum_probs=82.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...++|+++|.+|+|||||+|++++... .....+++...........+ ..+.+|||||..+. .... ..+
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~~~~----~~~ 86 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY---AAIR----DNY 86 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC---HHHH----HHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCccc---HHHH----HHH
Confidence 3679999999999999999999998763 22333333333333344555 37899999998543 1122 222
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~ 174 (243)
+ ..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+.+....
T Consensus 87 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~ 143 (187)
T 2a9k_A 87 F--RSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSV 143 (187)
T ss_dssp H--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGCCSCH
T ss_pred h--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCccCH
Confidence 2 3789999998886543223445566666665432 1369999999999864444443
No 29
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.69 E-value=5.8e-16 Score=119.73 Aligned_cols=125 Identities=23% Similarity=0.177 Sum_probs=81.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
.+.++|+++|.+|+|||||+|++++... .....+++..........++ ..+.+|||||..+...... ..+
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~---~~~--- 78 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMRE---QYM--- 78 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHH---HHH---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcC--ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHH---HHH---
Confidence 3679999999999999999999998753 23333333333334445555 4788999999865543322 122
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
..+|++++|++++..........++..+...... ...|+++|+||+|+.+.+...
T Consensus 79 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~ 133 (181)
T 2fn4_A 79 ---RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLESQRQVP 133 (181)
T ss_dssp ---HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGGGCCSC
T ss_pred ---hhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccccC
Confidence 2689999998886533223334455555433321 236999999999996444443
No 30
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.69 E-value=2.4e-16 Score=121.80 Aligned_cols=128 Identities=20% Similarity=0.158 Sum_probs=82.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC---eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG---FTLNIVDTPGLIEGGYVNYHAIQLIKR 113 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~viDTPG~~~~~~~~~~~~~~~~~ 113 (243)
...++|+++|.+|+|||||+|++++.... ....++.+.+.........+ ..+.+|||||......... ..+
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~---~~~-- 77 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFG-KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLD---KYI-- 77 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTT-HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHH---HHH--
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhh---HHH--
Confidence 36799999999999999999999987632 22223333334444455555 6899999999865433221 122
Q ss_pred HHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc-EEEEEeCCCCCCCCCCCH
Q 026113 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSLPDRLDY 174 (243)
Q Consensus 114 ~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~~~~~~~~ 174 (243)
.++|++++|++++.....+....++..+..........| +++|+||+|+.+.+..+.
T Consensus 78 ----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~ 135 (178)
T 2hxs_A 78 ----YGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKP 135 (178)
T ss_dssp ----TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCH
T ss_pred ----hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCH
Confidence 489999999888653222233456666655433211245 899999999864333333
No 31
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.69 E-value=2.5e-16 Score=120.29 Aligned_cols=124 Identities=16% Similarity=0.091 Sum_probs=78.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
++++|+++|.+|+|||||+|++++.... ....++...........+ +..+.+|||||..+... .....+
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~~~~~~---- 72 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA---MRDLYM---- 72 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT---HHHHHH----
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH---HHHHHh----
Confidence 4689999999999999999999987532 222222222222222333 34789999999864432 222222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+.+..+
T Consensus 73 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~ 127 (167)
T 1c1y_A 73 --KNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDERVVG 127 (167)
T ss_dssp --HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGCCSC
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECccccccccCC
Confidence 2689999998886533223334566666554332 237999999999996444333
No 32
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.69 E-value=8.8e-16 Score=119.37 Aligned_cols=129 Identities=19% Similarity=0.183 Sum_probs=83.2
Q ss_pred cCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHH
Q 026113 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIK 112 (243)
Q Consensus 35 ~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~ 112 (243)
.....++|+++|.+|+|||||+|++++... .....+++..........++. .+.+|||||..+...... ..++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~---~~~~ 88 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIF--VDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMRE---QYMR 88 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHH---HHHH
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHH---HHHh
Confidence 345689999999999999999999997753 222223333333444455555 466799999864433322 2232
Q ss_pred HHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 113 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 113 ~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
++|++++|++++.....+....++..+...... ...|+++|+||+|+.+.+....+
T Consensus 89 ------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~v~~~ 144 (183)
T 3kkq_A 89 ------TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTRD 144 (183)
T ss_dssp ------HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCHH
T ss_pred ------cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhccCcCHH
Confidence 789999998886543223344566666554332 23699999999999754444443
No 33
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.69 E-value=1.7e-16 Score=121.65 Aligned_cols=125 Identities=17% Similarity=0.145 Sum_probs=79.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||+|++++... .....++.+..........++ ..+.+|||||..+.... ...+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~~- 75 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKF-NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL-------GPIY- 75 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCC-CSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCS-
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-CcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhh-------HHHH-
Confidence 579999999999999999999998763 222233333333333444444 37889999997532211 1111
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~ 174 (243)
...+|++++|++++.....+....++..+....+.. .|+++|+||+|+.+.+..+.
T Consensus 76 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~ 131 (170)
T 1z08_A 76 -YRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKERHVSI 131 (170)
T ss_dssp -STTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGGCCSCH
T ss_pred -hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccccccCH
Confidence 258899999988865332233445666666655433 69999999999965444443
No 34
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.69 E-value=5.4e-16 Score=123.10 Aligned_cols=126 Identities=17% Similarity=0.125 Sum_probs=84.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||+|+|++.... ....++.+..........++. .+.+|||||..+....... .+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~---~~---- 78 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYT-NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSS---YY---- 78 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCC-TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGG---GG----
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHH---hc----
Confidence 5699999999999999999999987642 223333343444444455553 7999999998655433221 11
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
..+|++++|++++.....+....++..+...... ..|+++|+||+|+.+.+....+
T Consensus 79 --~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~ 134 (206)
T 2bcg_Y 79 --RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLKDKRVVEYD 134 (206)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHH
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccCHH
Confidence 4899999998886533223344566666554433 3689999999999754444433
No 35
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.69 E-value=1e-15 Score=121.16 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=83.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...++|+++|.+|+|||||+|++++... .....+++..........++. .+.+|||||..+.. ... ..+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~----~~~ 82 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA---AIR----DNY 82 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---HHH----HHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH---HHH----HHH
Confidence 3679999999999999999999998763 223333333333334445554 79999999985432 111 222
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHH
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~ 176 (243)
+ ..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+.+..+.++
T Consensus 83 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~ 141 (206)
T 2bov_A 83 F--RSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEE 141 (206)
T ss_dssp H--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTCGGGCCSCHHH
T ss_pred H--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccCccccccccHHH
Confidence 2 3789999998887543223345566666655431 236999999999996544444443
No 36
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.69 E-value=6.5e-16 Score=119.26 Aligned_cols=125 Identities=16% Similarity=0.108 Sum_probs=80.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||+|++++..... ...+..+...........+ ..+.+|||||..+. .......+
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~~~~~~~~---- 85 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF---RAVTRSYY---- 85 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-SCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT---CHHHHHHH----
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCeEEEEEEEECCCChHh---hhhHHHHh----
Confidence 56999999999999999999999876422 1122222222233333444 47999999997432 22222233
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~ 174 (243)
..+|++++|++++.....+....++..+...... ..|+++|+||+|+.+.+....
T Consensus 86 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~ 140 (179)
T 1z0f_A 86 --RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADLEAQRDVTY 140 (179)
T ss_dssp --HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCH
T ss_pred --ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCH
Confidence 3889999998886543223344566666655433 368999999999964444433
No 37
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.69 E-value=1.2e-16 Score=141.55 Aligned_cols=134 Identities=24% Similarity=0.265 Sum_probs=86.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~--~~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||+|++++.....++..+++|.+.......+++..+.+|||||+.+.....+ +....++...
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 46899999999999999999999988655677777777766666778889999999999865433110 1122222111
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~ 177 (243)
....+|++++|+++.. ..+..+..++..+... ..|+++|+||+|+.+.+....++.
T Consensus 254 ~~~~ad~~llv~D~~~-~~s~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~~~~~~~~~~~ 309 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDKDESTMKEF 309 (436)
T ss_dssp HHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCCCTTHHHHH
T ss_pred HHHhCCEEEEEEcCCc-CCcHHHHHHHHHHHHc-----CCcEEEEEECccCCCcchHHHHHH
Confidence 1137899999988764 3455566666555432 369999999999975444333333
No 38
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.69 E-value=2.2e-16 Score=120.72 Aligned_cols=124 Identities=14% Similarity=0.060 Sum_probs=68.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+||+++|.+|+|||||+|++++.........+..+. ......++ ..+.+|||||......... .++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~~- 70 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY---DRSIVVDGEEASLMVYDIWEQDGGRWLPG-------HCM- 70 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEE---EEEEEETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce---EEEEEECCEEEEEEEEECCCCccchhhhh-------hhh-
Confidence 5899999999999999999999876543333222221 12223333 4788999999864322211 112
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
..+|++++|++++.....+....++..+..... ....|+++|+||+|+.+.+..+.+
T Consensus 71 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~ 127 (166)
T 3q72_A 71 -AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVD 127 (166)
T ss_dssp ---CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHH
T ss_pred -hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccCHH
Confidence 488999999888754322333445555544322 123699999999999755544433
No 39
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.69 E-value=6e-16 Score=118.81 Aligned_cols=120 Identities=17% Similarity=0.284 Sum_probs=77.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+.++|+++|.+|+|||||+|++++... .++..++.+.........+.+..+.+|||||+.+...... .......++..
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI-DEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSS-SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSH-HHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCe-eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcch-hHHHHHHHHhc
Confidence 368999999999999999999998763 3444555555544555566788999999999976533221 11111223322
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|+++.. . +....++..+.+ ...|+++|+||+|+.
T Consensus 80 ~~~~~~i~v~D~~~--~-~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 80 EKPDLVVNIVDATA--L-ERNLYLTLQLME-----MGANLLLALNKMDLA 121 (165)
T ss_dssp HCCSEEEEEEETTC--H-HHHHHHHHHHHH-----TTCCEEEEEECHHHH
T ss_pred CCCCEEEEEecCCc--h-hHhHHHHHHHHh-----cCCCEEEEEEchHhc
Confidence 47899999977653 1 222334444433 136999999999985
No 40
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.69 E-value=1.4e-16 Score=124.17 Aligned_cols=126 Identities=16% Similarity=0.108 Sum_probs=81.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...++|+++|.+|+|||||+|++++.... ....+..+..........++ ..+.+|||||..+. ......+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~ 79 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFK-DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF-------RSVTRSY 79 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH-------HHHHHHH
Confidence 35699999999999999999999987642 22223333233333444555 58999999997421 1112222
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~ 174 (243)
+ ..+|++++|++++.....+....++..+...... ..|+++|+||+|+.+.+..+.
T Consensus 80 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~ 135 (186)
T 2bme_A 80 Y--RGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLDADREVTF 135 (186)
T ss_dssp S--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCH
T ss_pred H--hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCH
Confidence 2 5899999998886533223334566666554433 369999999999964444443
No 41
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=6.9e-16 Score=122.84 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=81.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||+|++++... .....++.+.........+.+ ..+.+|||||..+...... ..+
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~---~~~---- 90 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITT---AYY---- 90 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCC-CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCH---HHH----
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHH---HHh----
Confidence 569999999999999999999998764 233334444444445555666 5799999999764433222 122
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+|++++|++++.....+....++..+...... ..|+++|+||+|+.
T Consensus 91 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~ 138 (213)
T 3cph_A 91 --RGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDME 138 (213)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTT--CSEEEEEEECTTCS
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCc
Confidence 4899999998886533223334666666665433 36999999999983
No 42
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.69 E-value=4.4e-16 Score=119.21 Aligned_cols=122 Identities=16% Similarity=0.099 Sum_probs=78.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||+|++++..... ...+..+...........+ ..+.+|||||+.+..... ..++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~-------~~~~ 76 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDP-NINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALA-------PMYY 76 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGT-------HHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhccc-------HhhC
Confidence 56999999999999999999999886322 1122222222222333443 579999999985332111 1122
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~ 171 (243)
..+|++++|++++.....+....++..+...... ..|+++|+||+|+.+.+.
T Consensus 77 --~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~~~~ 128 (170)
T 1z0j_A 77 --RGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVVAIAGNKCDLTDVRE 128 (170)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TSEEEEEEECTTCGGGCC
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECCccccccc
Confidence 4889999998886533223335566666654322 368999999999964433
No 43
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=4.2e-16 Score=119.23 Aligned_cols=120 Identities=13% Similarity=0.100 Sum_probs=78.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
.+++|+++|.+|+|||||+|++++.... ....+..+..........++ ..+.+|||||..+.. .. ...++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---~~----~~~~~ 73 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFA-ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA---SL----APXYY 73 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG---GG----HHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh---hh----hhhhh
Confidence 4689999999999999999999987632 22223333333333334444 479999999975322 11 12222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
..+|++++|++++.....+....++..+...... ..|+++|+||+|+.+.
T Consensus 74 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 74 --RNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--DIIIALVGNKIDXLQE 123 (170)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGS
T ss_pred --ccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCcccc
Confidence 4899999998886543223344556666655433 3689999999998643
No 44
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.69 E-value=7.3e-16 Score=119.42 Aligned_cols=126 Identities=13% Similarity=0.066 Sum_probs=81.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...++|+++|.+|+|||||+|++++..... ...++.+...........+ ..+.+|||||..+..... ..+
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~ 81 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA-------PMY 81 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTT-TSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGT-------HHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC-cCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhh-------HHH
Confidence 357999999999999999999999876432 2222223223333333443 479999999975332111 122
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~ 174 (243)
+ ..+|++++|++++.....+....++..+...... ..|+++|+||+|+.+.+....
T Consensus 82 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~ 137 (181)
T 2efe_B 82 Y--RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP--NMVMALAGNKSDLLDARKVTA 137 (181)
T ss_dssp H--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCH
T ss_pred h--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccccccCCH
Confidence 2 4899999998886533223445566666654322 368999999999965444443
No 45
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=3.9e-16 Score=123.07 Aligned_cols=125 Identities=13% Similarity=0.139 Sum_probs=80.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||+|++++..... ...++...........++ ..+.+|||||..+ .......+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~---- 96 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIW--EYDPTLESTYRHQATIDDEVVSMEILDTAGQED----TIQREGHM---- 96 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC----CHHHHHHH----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCCCCceEEEEEEECCEEEEEEEEECCCCCc----ccchhhhh----
Confidence 57999999999999999999999876422 222222222222334444 4799999999965 22222233
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+.+..+.+
T Consensus 97 --~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~~~ 153 (196)
T 2atv_A 97 --RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHSRQVSTE 153 (196)
T ss_dssp --HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGGCCSCHH
T ss_pred --ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECcccccccccCHH
Confidence 2789999998886533223344556666654331 23699999999999644444433
No 46
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.68 E-value=5e-16 Score=118.89 Aligned_cols=118 Identities=19% Similarity=0.207 Sum_probs=77.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||+|++++... .....++.+..........++ ..+.+|||||..+....... .+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~---~~---- 73 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTA---YY---- 73 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCC-CC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHH---HH----
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHH---Hh----
Confidence 468999999999999999999998764 222233333333334444454 47899999997654333221 22
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+|++++|++++.....+....++..+...... ..|+++|+||+|+.
T Consensus 74 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~ 121 (170)
T 1g16_A 74 --RGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDME 121 (170)
T ss_dssp --TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCT
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCC
Confidence 4899999998886533223345566666665433 36999999999983
No 47
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.68 E-value=8.5e-16 Score=120.94 Aligned_cols=123 Identities=14% Similarity=0.108 Sum_probs=77.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-------------------------------
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG------------------------------- 86 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~------------------------------- 86 (243)
..++|+++|.+|+|||||+|+|++.... ....++.+...........+
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFH-ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC-CCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 5799999999999999999999988632 22222222223222233333
Q ss_pred --------eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEE
Q 026113 87 --------FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL 158 (243)
Q Consensus 87 --------~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~i 158 (243)
..+.+|||||..+.... . ..++ ..+|++++|++++.....+....++..+....+ .|++
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~---~----~~~~--~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----~pii 151 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASI---V----PLYY--RGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----YIII 151 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTT---H----HHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----CEEE
T ss_pred cccCccceeEEEEEECCCcHHHHHH---H----HHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----CcEE
Confidence 68999999997543322 1 2222 489999999887653222333445555555433 6999
Q ss_pred EEEeCCCCCCCCCCCHH
Q 026113 159 IVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 159 vV~tk~D~~~~~~~~~~ 175 (243)
+|+||+| ........+
T Consensus 152 lv~NK~D-~~~~~~~~~ 167 (208)
T 3clv_A 152 LVANKID-KNKFQVDIL 167 (208)
T ss_dssp EEEECTT-CC-CCSCHH
T ss_pred EEEECCC-cccccCCHH
Confidence 9999999 333344433
No 48
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.68 E-value=1.1e-15 Score=119.80 Aligned_cols=127 Identities=12% Similarity=0.118 Sum_probs=81.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
.+.++|+++|.+|+|||||+|++++..... ...+..+.+........++ ..+.+|||||..+... .....+
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~ 90 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPD-RTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK------SMVQHY 90 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCS-SCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT------TTHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhh------hhhHHH
Confidence 367999999999999999999999776422 2223333333344444555 5899999999732110 112223
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
+ ..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+.+...
T Consensus 91 ~--~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~ 146 (189)
T 1z06_A 91 Y--RNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRSAIQVP 146 (189)
T ss_dssp H--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGGGCCSC
T ss_pred h--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccceeC
Confidence 3 5899999998886533223345566666665422 236999999999996444433
No 49
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.68 E-value=2.8e-16 Score=129.63 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=85.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHHh
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLL 116 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~---~~~~~~~~~~~~ 116 (243)
.+|+++|.+|+|||||+|+|+|... .++..++.|.+.........+..+.+|||||+.+..... .......+.++.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 4899999999999999999999974 577778888877777778889999999999997665320 111122344554
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
...+|++++|++... . +....+..++.+ ...|+++|+||+|+.+
T Consensus 81 ~~~~d~vi~VvDas~--~-~~~~~l~~~l~~-----~~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 81 DLEYDCIINVIDACH--L-ERHLYLTSQLFE-----LGKPVVVALNMMDIAE 124 (256)
T ss_dssp HSCCSEEEEEEEGGG--H-HHHHHHHHHHTT-----SCSCEEEEEECHHHHH
T ss_pred hCCCCEEEEEeeCCC--c-hhHHHHHHHHHH-----cCCCEEEEEEChhcCC
Confidence 578999999966653 1 222223333322 2379999999999853
No 50
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.68 E-value=3.8e-16 Score=122.87 Aligned_cols=125 Identities=16% Similarity=0.150 Sum_probs=78.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...++|+++|.+|+|||||+|++++.... ....+..+.+........++ ..+.+|||||..+. ... ...+
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---~~~----~~~~ 95 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFC-EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF---NSI----TSAY 95 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG---HHH----HHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH---HHH----HHHH
Confidence 35699999999999999999999987642 22223333333344445555 47999999997422 111 2222
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
+ ..+|++++|++++.....+....++..+...... ..|+++|+||+|+.+.+...
T Consensus 96 ~--~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilV~NK~Dl~~~~~v~ 150 (192)
T 2il1_A 96 Y--RSAKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCETDREIT 150 (192)
T ss_dssp H--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSC
T ss_pred h--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccC
Confidence 2 3789999998886533223334566666554332 36999999999986444433
No 51
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.68 E-value=4.8e-16 Score=121.98 Aligned_cols=139 Identities=14% Similarity=0.096 Sum_probs=81.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccc--cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTV--STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...++|+++|.+|+|||||+|++++...... ...+.. ...+.+..+.+|||||+.+...... ..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~Dt~G~~~~~~~~~---~~~~~~ 115 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-------AADYDGSGVTLVDFPGHVKLRYKLS---DYLKTR 115 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCBSSCCHH---HHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce-------eeeecCCeEEEEECCCCchHHHHHH---HHHHhh
Confidence 4678999999999999999999998763211 111111 1123567899999999976543322 233322
Q ss_pred HhcCCCcEEEEEEeCC-CcccChhHHHHHHHHHHHhc--ccccccEEEEEeCCCCCCCCCCCHHHHHHhhhHHHHHHH
Q 026113 115 LLNKTIDVLLYVDRLD-VYRVDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFV 189 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d-~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i 189 (243)
. ..+|++++|+++. ..........++..+..... .....|+++|+||+|+.. ....++..+...+.+..+.
T Consensus 116 ~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~l~~~l~~l~ 189 (193)
T 2ged_A 116 A--KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT--ARPPSKIKDALESEIQKVI 189 (193)
T ss_dssp G--GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT--CCCHHHHHHHHHHHHHHHH
T ss_pred c--ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC--CCCHHHHHHHHHHHHHHHh
Confidence 2 3689999998876 22111122233333332221 112379999999999963 3345555544444555543
No 52
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.68 E-value=6e-16 Score=121.47 Aligned_cols=126 Identities=14% Similarity=0.069 Sum_probs=81.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...+||+++|.+|+|||||+|++++...... ..++.+..........++ ..+.+|||||..+....... .+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---~~--- 91 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRS---YY--- 91 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHH---HH---
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHH---Hh---
Confidence 3569999999999999999999998764222 222333333334444555 48999999998654433221 22
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~ 174 (243)
.++|++++|++++.....+....++..+...... ..|+++|+||+|+.+.+....
T Consensus 92 ---~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~~~v~~ 146 (191)
T 2a5j_A 92 ---RGAAGALLVYDITRRETFNHLTSWLEDARQHSSS--NMVIMLIGNKSDLESRRDVKR 146 (191)
T ss_dssp ---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCH
T ss_pred ---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCCccccCH
Confidence 4899999998886533223334566666554332 369999999999964444433
No 53
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.68 E-value=2.4e-15 Score=117.69 Aligned_cols=121 Identities=17% Similarity=0.138 Sum_probs=80.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH--H-HHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--H-AIQLIKRF 114 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~--~-~~~~~~~~ 114 (243)
..++|+++|.+|+|||||+|++++.........+..+...... ..+..+.+|||||+........ + .......+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~---~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFY---LVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEE---EETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEE---EECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 5689999999999999999999998754444444444433222 2245788999999865443321 1 22222333
Q ss_pred H-hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 115 L-LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 115 ~-~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+ ....+|++++|++... .....+...++++... ..|+++|+||+|+.
T Consensus 99 ~~~~~~~~~vi~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRI-PPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKV 146 (195)
T ss_dssp HHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGS
T ss_pred HhcCcCceEEEEEecCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEEChhcC
Confidence 3 2357799999977653 3455555666666553 36999999999986
No 54
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=125.25 Aligned_cols=126 Identities=16% Similarity=0.213 Sum_probs=78.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee--eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS--RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
+.+||+++|.+|+|||||+|++++.... ....+++......... ..+..+.+|||||..+....... .+
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~---~~---- 93 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYS---FI---- 93 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGG---GT----
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHH---HH----
Confidence 6799999999999999999999987743 2222222222222222 24567899999998765443321 11
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+.+..+.+
T Consensus 94 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~ 150 (201)
T 3oes_A 94 --IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGK-TRVPVVLVGNKADLSPEREVQAV 150 (201)
T ss_dssp --TTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHH
T ss_pred --hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCccccccCHH
Confidence 4899999998887533223334455444443222 23699999999998755444443
No 55
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=2.2e-16 Score=124.17 Aligned_cols=126 Identities=16% Similarity=0.096 Sum_probs=79.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee--eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS--RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...++|+++|.+|+|||||+|++++..... ...+..+......... ..+..+.+|||||..+..... ..+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~ 92 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDH-NISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLA-------PMY 92 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCT-TCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGT-------HHH
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCC-CcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhh-------HHh
Confidence 357999999999999999999999876321 1112222222222222 244589999999975432211 122
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~ 174 (243)
+ ..+|++++|++++.....+....++..+...... ..|+++|+||+|+.+.+....
T Consensus 93 ~--~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~~~~v~~ 148 (192)
T 2fg5_A 93 Y--RGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE--NIVMAIAGNKCDLSDIREVPL 148 (192)
T ss_dssp H--TTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCH
T ss_pred h--ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccccccccCH
Confidence 2 4899999998886533223345566666554322 369999999999964344333
No 56
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.67 E-value=6.4e-16 Score=118.17 Aligned_cols=125 Identities=14% Similarity=0.110 Sum_probs=78.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
.+++|+++|.+|+|||||+|++++...... ..+..+........... +..+.+|||||..+.. ... ..++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---~~~----~~~~ 76 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEF-QESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH---SLA----PMYY 76 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTT-CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG---GGH----HHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh---hhh----HHhc
Confidence 579999999999999999999997663221 11222222222223333 4589999999975322 111 2222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~ 174 (243)
..+|++++|++++.....+....++..+...... ..|+++|+||+|+.+.+..+.
T Consensus 77 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~Dl~~~~~~~~ 131 (170)
T 1r2q_A 77 --RGAQAAIVVYDITNEESFARAKNWVKELQRQASP--NIVIALSGNKADLANKRAVDF 131 (170)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCH
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccccccCH
Confidence 4899999998886533223334555555554333 368999999999864444333
No 57
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.67 E-value=6.1e-16 Score=122.72 Aligned_cols=127 Identities=13% Similarity=0.099 Sum_probs=79.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...++|+++|.+|+|||||+|++++.... ....++.+.........+++ ..+.+|||||..+. . .....+
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---~----~~~~~~ 98 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFS-ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF---R----TITQSY 98 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGG---H----HHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCC-CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH---H----HHHHHH
Confidence 35699999999999999999999977632 22222222333334445555 48999999998422 1 122223
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
+ ..+|++++|++++.....+....++..+...... ..|+++|+||+|+.+.+..+.+
T Consensus 99 ~--~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~~~v~~~ 155 (201)
T 2hup_A 99 Y--RSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS--NIVQLLIGNKSDLSELREVSLA 155 (201)
T ss_dssp H--TTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHH
T ss_pred H--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCccccccccCHH
Confidence 3 5899999998886532223344566666655432 3699999999999644444433
No 58
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.67 E-value=1.2e-15 Score=126.09 Aligned_cols=121 Identities=20% Similarity=0.303 Sum_probs=86.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
+.++|+++|.+|+|||||+|+|+|... .++..++.|...........+..+.+|||||+.+......+ ....+.++..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-e~v~~~~~~~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSID-EKIARDYLLK 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHH-HHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHH-HHHHHHHHhh
Confidence 568999999999999999999999875 46667777777666667777899999999999866543311 1122334434
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
..+|++++|++.+. + +....+...+.+ . ..|+++|+||+|+..
T Consensus 82 ~~~d~ii~V~D~t~--~-~~~~~~~~~l~~---~--~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 82 GDADLVILVADSVN--P-EQSLYLLLEILE---M--EKKVILAMTAIDEAK 124 (258)
T ss_dssp SCCSEEEEEEETTS--C-HHHHHHHHHHHT---T--TCCEEEEEECHHHHH
T ss_pred cCCCEEEEEeCCCc--h-hhHHHHHHHHHh---c--CCCEEEEEECcCCCC
Confidence 68999999977653 2 222233333332 2 369999999999853
No 59
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.67 E-value=8.1e-16 Score=120.78 Aligned_cols=126 Identities=15% Similarity=0.109 Sum_probs=79.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKR 113 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~viDTPG~~~~~~~~~~~~~~~~~ 113 (243)
....++|+++|.+|+|||||+|+|++...... ..++.+.......... .+..+.+|||||+.+..... ...+
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---~~~~-- 95 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHD-SRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT---SAYY-- 95 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSS-CCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTH---HHHH--
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhh---HHHh--
Confidence 34579999999999999999999998764322 2222222222222333 34578999999996543222 1122
Q ss_pred HHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 114 ~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
..+|++++|++++..........++..+..... ...|+++|+||+|+...+...
T Consensus 96 ----~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~~~ 149 (193)
T 2oil_A 96 ----RGAVGALLVFDLTKHQTYAVVERWLKELYDHAE--ATIVVMLVGNKSDLSQAREVP 149 (193)
T ss_dssp ----TTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC--TTCEEEEEEECGGGGGGCCSC
T ss_pred ----ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECCCcccccccC
Confidence 489999999887643222223445555544322 236899999999996443433
No 60
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.67 E-value=5e-16 Score=138.27 Aligned_cols=135 Identities=24% Similarity=0.258 Sum_probs=91.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN--YHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~--~~~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||+|++++.....++..+++|.+........++..+.+|||||+.+..... .+....++...
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 273 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 273 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHH
Confidence 5689999999999999999999998766677777777776666667888999999999986533211 11122222111
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHHHH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFC 178 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~ 178 (243)
....+|++|+|++... .+++.+..++..+.+. .+|+++|+||+|+.+.+....++..
T Consensus 274 ~~~~ad~~llviD~~~-~~~~~~~~~~~~~~~~-----~~~~ilv~NK~Dl~~~~~~~~~~~~ 330 (456)
T 4dcu_A 274 AIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDKDESTMKEFE 330 (456)
T ss_dssp HHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCCCSSHHHHHH
T ss_pred HHhhCCEEEEEEeCCC-CcCHHHHHHHHHHHHc-----CCCEEEEEEChhcCCCchHHHHHHH
Confidence 1247899999977754 3667777777666652 3699999999999755554444443
No 61
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.67 E-value=4.7e-16 Score=123.19 Aligned_cols=127 Identities=17% Similarity=0.104 Sum_probs=78.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...++|+++|.+|+|||||+|++++.... ....++.+..........++ ..+.+|||||..+..... ..+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~-------~~~ 94 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFK-QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVT-------RSY 94 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCC-------HHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHH-------HHH
Confidence 46799999999999999999999987642 22223333333344444555 589999999974322221 112
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
+ ..+|++++|++++.....+....++..+...... ..|+++|+||+|+.+.+..+.+
T Consensus 95 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~v~~~ 151 (200)
T 2o52_A 95 Y--RGAAGALLVYDITSRETYNSLAAWLTDARTLASP--NIVVILCGNKKDLDPEREVTFL 151 (200)
T ss_dssp H--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCT--TCEEEEEEECGGGGGGCCSCHH
T ss_pred h--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCcccccccCHH
Confidence 2 4899999998886533223344566556554432 3689999999998644444433
No 62
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.66 E-value=1.6e-15 Score=118.75 Aligned_cols=124 Identities=14% Similarity=0.095 Sum_probs=80.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||+|++++.... ....+..+........... +..+.+|||||..+...... .++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~ 92 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITT-------AYY 92 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGG-------GGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHH-------Hhc
Confidence 4699999999999999999999987642 2222222323322333333 35899999999865443321 111
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
..+|++++|++++.....+....++..+...... ..|+++|+||+|+.+.+...
T Consensus 93 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~ 146 (189)
T 2gf9_A 93 --RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD--NAQVILVGNKCDLEDERVVP 146 (189)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSC
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccccCCC
Confidence 4899999998886533223344566666554322 36999999999996444433
No 63
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.66 E-value=2.1e-16 Score=122.95 Aligned_cols=126 Identities=14% Similarity=0.160 Sum_probs=61.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||+|++++... .....++.+..........++ ..+.+|||||..+..... ..++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~ 78 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT-------TAYY 78 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------C-------CTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhH-------HHHH
Confidence 469999999999999999999997653 222222223333333445566 689999999985432111 1111
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
.++|++++|++++.....+....++..+...... ..|+++|+||+|+.+.+..+.+
T Consensus 79 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~v~~~ 134 (183)
T 2fu5_C 79 --RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA--DVEKMILGNKCDVNDKRQVSKE 134 (183)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEEC--CCSCCCSCHH
T ss_pred --hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECccCCccCcCCHH
Confidence 5899999998886532223334566666554332 3699999999999654444433
No 64
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.66 E-value=2.7e-15 Score=117.58 Aligned_cols=127 Identities=13% Similarity=0.140 Sum_probs=79.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...+||+++|.+|+|||||+|++++... .....++...........++ ..+.+|||||....... ...+
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----~~~~--- 89 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC----ERYL--- 89 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT----HHHH---
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH----HHHH---
Confidence 4679999999999999999999998763 22223333222222333444 47889999998654432 1122
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc-cccccEEEEEeCCCCCCCCCCCHH
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~-~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
..+|++++|++++.....+....++..+...... ....|+++|+||+|+...+..+.+
T Consensus 90 ---~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~ 148 (187)
T 3c5c_A 90 ---NWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKA 148 (187)
T ss_dssp ---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHH
T ss_pred ---hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHH
Confidence 4899999999987543223334566666654321 123699999999998644444433
No 65
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.66 E-value=2.5e-15 Score=114.12 Aligned_cols=119 Identities=21% Similarity=0.155 Sum_probs=76.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
++++|+++|.+|+|||||+|++++.... ....+++...........+ ..+.+|||||..+.. ......+
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---~~~~~~~---- 72 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS---AMRDQYM---- 72 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC---HHHHHHH----
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEECCEEEEEEEEECCCchhhh---HHHHHhh----
Confidence 4689999999999999999999987632 2222222233333334444 358899999985432 2222222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+
T Consensus 73 --~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 73 --RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAA 122 (166)
T ss_dssp --HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhh
Confidence 2789999998876433223335556666554431 1369999999999864
No 66
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.66 E-value=6.1e-16 Score=123.88 Aligned_cols=121 Identities=14% Similarity=0.139 Sum_probs=78.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AG--FTLNIVDTPGLIEGGYVNYHAIQLIKR 113 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~viDTPG~~~~~~~~~~~~~~~~~ 113 (243)
...+||+++|.+|+|||||+|+|++...... ..+..+.......... .+ ..+.+|||||..+....... .+
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~---~~-- 82 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKN-YNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDV---YY-- 82 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCE-EETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHH---HH--
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHH---Hh--
Confidence 3579999999999999999999998763211 1122221111222212 22 57999999998655443322 22
Q ss_pred HHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 114 ~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
.++|++++|++++.....+....++..+....+.+ .|+++|+||+|+.+.
T Consensus 83 ----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~ 132 (218)
T 4djt_A 83 ----IGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNR 132 (218)
T ss_dssp ----TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC--
T ss_pred ----hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc
Confidence 48999999988865433334456777777665543 699999999998643
No 67
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.66 E-value=3.3e-16 Score=139.71 Aligned_cols=126 Identities=21% Similarity=0.249 Sum_probs=65.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-h
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-L 116 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~-~ 116 (243)
+.++|+++|.+|+|||||+|+|++.+.+.+...+++|.+........+|.++.+|||||+.++....+.. .++... .
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~--gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHE--GIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC----------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHH--HHHHHHhh
Confidence 5689999999999999999999998766777778778777767777899999999999996543221110 011111 2
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
...+|++|+|++.+.....+.......++... . ..|+++|+||+|+.+.
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~---~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAH-P---AAKFLTVANKLDRAAN 358 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T---TSEEEEEEECTTSCTT
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C---CCCEEEEEECcCCCCc
Confidence 36899999998876432211111222233322 2 2699999999998643
No 68
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.66 E-value=1.7e-15 Score=115.96 Aligned_cols=127 Identities=15% Similarity=0.073 Sum_probs=74.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+||+++|.+|+|||||+|++++........ +..+..........++ ..+.+|||||..+...... ...+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--~~~~----- 73 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHE-MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQ--DHCL----- 73 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC----------CHHH-----
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccccc-CCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhh--hhhh-----
Confidence 4799999999999999999999765432222 2223333444444555 4688999999965322100 0112
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+.+..+.+
T Consensus 74 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~ 130 (169)
T 3q85_A 74 -QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLE 130 (169)
T ss_dssp -HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGGCCSCHH
T ss_pred -ccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhcccCCHH
Confidence 2689999998887543223344555555554331 13699999999998644444443
No 69
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.66 E-value=2.8e-15 Score=117.25 Aligned_cols=121 Identities=19% Similarity=0.177 Sum_probs=75.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKR 113 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~ 113 (243)
+.++++|+++|.+|+|||||+|++++.... .....++...........+. .+.+|||||..+... ....
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~ 88 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQ 88 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------------
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCChHHHHH-------HHHH
Confidence 346799999999999999999999987632 22223333333334445554 589999999753321 1112
Q ss_pred HHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 114 ~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
++ ..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+
T Consensus 89 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 89 YM--RTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPT 140 (190)
T ss_dssp -C--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred hh--CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCc
Confidence 22 5899999998886543223334556566554331 1369999999999864
No 70
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.66 E-value=5.2e-16 Score=119.93 Aligned_cols=116 Identities=14% Similarity=0.076 Sum_probs=79.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+.++|+++|.+|+|||||+|++++... .....++.+..........++..+.+|||||+.+...... . .
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~--~ 75 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKV-TEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRA-------R--G 75 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCS-SCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCC-------S--S
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcc-ccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHH-------H--H
Confidence 4679999999999999999999998764 3333344444444445567888999999999865543321 1 1
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
...+|++++|++++.. ........+ ...... ..|+++|+||+|+.+
T Consensus 76 ~~~~d~~i~v~d~~~~-~~~~~~~~l---~~~~~~--~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 76 AQVTDIVILVVAADDG-VMPQTVEAI---NHAKAA--NVPIIVAINKMDKPE 121 (178)
T ss_dssp CCCCCEEEEEEETTCC-CCHHHHHHH---HHHGGG--SCCEEEEEETTTSSC
T ss_pred HhhCCEEEEEEECCCC-CcHHHHHHH---HHHHhC--CCCEEEEEECccCCc
Confidence 2589999999887542 233333333 332222 369999999999863
No 71
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=1.3e-15 Score=119.97 Aligned_cols=121 Identities=19% Similarity=0.097 Sum_probs=76.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...++|+++|.+|+|||||+|++++..... ...+. ...........++ ..+.+|||||..+.. ... ..+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t-~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~----~~~ 76 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRD-TYIPT-IEDTYRQVISCDKSVCTLQITDTTGSHQFP---AMQ----RLS 76 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCC-TTSCC-CCEEEEEEEEETTEEEEEEEEECCGGGSCH---HHH----HHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCC-cccCc-cccceeEEEEECCEEEEEEEEeCCChHHhH---HHH----HHh
Confidence 367999999999999999999999876321 11121 1122222223333 478999999975431 111 222
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
+ ..+|++++|++++.....+....++..+....+.....|+++|+||+|+.+
T Consensus 77 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 77 I--SKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp H--HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred h--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 2 378999999888653322333445666666544323469999999999863
No 72
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.65 E-value=1.5e-15 Score=117.18 Aligned_cols=120 Identities=21% Similarity=0.189 Sum_probs=78.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||+|++++... .....++.+..........++ ..+.+|||||.... ......++
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~ 77 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF-------RSLRTPFY 77 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCC-CC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG-------HHHHGGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh-------hhhHHHHH
Confidence 579999999999999999999997763 222223333333344445565 48999999997421 11112222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc--cccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~ 167 (243)
..+|++++|++++.....+....++..+...... ....|+++|+||+|+.
T Consensus 78 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 78 --RGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred --hcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 5899999998887543223345566666655431 1236999999999986
No 73
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.65 E-value=1.1e-15 Score=119.38 Aligned_cols=125 Identities=17% Similarity=0.089 Sum_probs=78.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeE-EEEeeeC-----------CeEEEEEeCCCCCCCCCCcH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV-MVSRSRA-----------GFTLNIVDTPGLIEGGYVNY 105 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~-~~~~~~~-----------~~~~~viDTPG~~~~~~~~~ 105 (243)
..++|+++|.+|+|||||+|++++.... ....++.+.... ....... ...+.+|||||+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----- 83 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFN-SKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF----- 83 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG-----
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCC-cCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH-----
Confidence 5699999999999999999999987632 222222222222 2222333 348999999998321
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCC
Q 026113 106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 106 ~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~ 173 (243)
......++ ..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+.+...
T Consensus 84 --~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~ 146 (195)
T 3bc1_A 84 --RSLTTAFF--RDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS-ENPDIVLCGNKSDLEDQRAVK 146 (195)
T ss_dssp --HHHHHHTT--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS-SSCCEEEEEECTTCGGGCCSC
T ss_pred --HHHHHHHH--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccccC
Confidence 11222222 5899999998886533223334566666554321 236999999999986443433
No 74
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.65 E-value=1.9e-15 Score=117.75 Aligned_cols=118 Identities=18% Similarity=0.212 Sum_probs=75.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
...++|+++|.+|+|||||+|++++.......+ |..........++..+.+|||||.... . .....++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~----t~g~~~~~~~~~~~~l~i~Dt~G~~~~---~----~~~~~~~- 81 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITP----TQGFNIKSVQSQGFKLNVWDIGGQRKI---R----PYWRSYF- 81 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEE----ETTEEEEEEEETTEEEEEEECSSCGGG---H----HHHHHHH-
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccC----cCCeEEEEEEECCEEEEEEECCCCHHH---H----HHHHHHh-
Confidence 467999999999999999999999886422221 111223345567889999999998421 1 1222233
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
.++|++++|++++.....+....++..+....+ ....|+++|+||+|+..
T Consensus 82 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~ 131 (181)
T 1fzq_A 82 -ENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLT 131 (181)
T ss_dssp -TTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTT
T ss_pred -CCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcCccc
Confidence 489999999887643211222233333322111 12369999999999863
No 75
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.1e-15 Score=123.03 Aligned_cols=125 Identities=14% Similarity=0.084 Sum_probs=79.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||+|++++..... ...++.+..........++ ..+.+|||||.......... .+
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---~~---- 83 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNM-DSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSA---YY---- 83 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGG---GT----
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHH---Hh----
Confidence 56999999999999999999999876422 2223333333344445566 58999999998654433221 11
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~ 174 (243)
..+|++|+|++++.....+....++..+...... ..|+++|+||+|+.+.+..+.
T Consensus 84 --~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~~~v~~ 138 (223)
T 3cpj_B 84 --RGAVGALIVYDISKSSSYENCNHWLSELRENADD--NVAVGLIGNKSDLAHLRAVPT 138 (223)
T ss_dssp --TTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGCCSCH
T ss_pred --ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccccccCH
Confidence 4899999998876533223344566666554332 369999999999964444443
No 76
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.65 E-value=3.5e-15 Score=116.31 Aligned_cols=118 Identities=17% Similarity=0.135 Sum_probs=76.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+.++|+++|.+|+|||||+|++++.. .....+ |..........++..+.+|||||+.+. ......+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~-------~~~~~~~-- 82 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VDTISP--TLGFNIKTLEHRGFKLNIWDVGGQKSL-------RSYWRNY-- 82 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCCC--CSSEEEEEEEETTEEEEEEEECCSHHH-------HTTGGGG--
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CCcccc--cCccceEEEEECCEEEEEEECCCCHhH-------HHHHHHH--
Confidence 367999999999999999999999877 222222 223334455567889999999998321 1111112
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
..++|++++|++++.....+....++..+..... ....|+++|+||+|+.+
T Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 83 FESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPG 133 (186)
T ss_dssp CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCCC
Confidence 2589999999888643222222333333333211 12369999999999963
No 77
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.65 E-value=3.8e-15 Score=115.22 Aligned_cols=114 Identities=16% Similarity=0.136 Sum_probs=76.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
.+.+||+++|.+|+|||||+|.+++..... ..++ ...........++ ..+.+|||||... ...++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t-~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~-- 71 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV--LEKT-ESEQYKKEMLVDGQTHLVLIREEAGAPD--------AKFSG-- 71 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC--CSSC-SSSEEEEEEEETTEEEEEEEEECSSSCC--------HHHHH--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC--cCCC-cceeEEEEEEECCEEEEEEEEECCCCch--------hHHHH--
Confidence 357999999999999999999999876432 2222 2222233344555 4688999999853 12333
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc-cccccEEEEEeCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLS 167 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~-~~~~~~ivV~tk~D~~ 167 (243)
++|++++|++++.....+....+++++...... ....|+++|+||+|+.
T Consensus 72 ----~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 72 ----WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp ----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred ----hCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 789999998886543223344555556554331 1236999999999984
No 78
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=3.1e-15 Score=116.89 Aligned_cols=117 Identities=8% Similarity=0.005 Sum_probs=74.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+.++|+++|.+|+|||||+|++++...... .++ .........+++..+.+|||||+.+...... .++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~t--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~- 81 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT--SPT--IGSNVEEIVINNTRFLMWDIGGQESLRSSWN-------TYY- 81 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE--ECC--SCSSCEEEEETTEEEEEEECCC----CGGGH-------HHH-
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcC--cCC--CccceEEEEECCEEEEEEECCCCHhHHHHHH-------HHh-
Confidence 4689999999999999999999997764322 222 1122334456789999999999965432221 222
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++.....+....++..+.+... ....|+++|+||+|+.
T Consensus 82 -~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 130 (187)
T 1zj6_A 82 -TNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVK 130 (187)
T ss_dssp -TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTST
T ss_pred -cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCc
Confidence 489999999888643212223334444433211 1237999999999986
No 79
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.65 E-value=2.1e-15 Score=119.32 Aligned_cols=125 Identities=15% Similarity=0.126 Sum_probs=79.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||+|++++.... ....+..+........... +..+.+|||||+.+. ......++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~ 78 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY-------RTITTAYY 78 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC-SCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEEECCeEEEEEEEECCCchhh-------cchHHHhh
Confidence 4689999999999999999999988742 2222222222222333334 358999999998421 11122222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~ 174 (243)
..+|++++|++++.....+....++..+...... ..|+++|+||+|+.+.+....
T Consensus 79 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~ 133 (203)
T 1zbd_A 79 --RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVLLVGNKCDMEDERVVSS 133 (203)
T ss_dssp --GGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCS--SCEEEEEEECTTCTTSCCSCH
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCcccccCH
Confidence 4899999998886532223334555555554322 369999999999965444443
No 80
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.65 E-value=4.3e-15 Score=117.35 Aligned_cols=129 Identities=15% Similarity=0.056 Sum_probs=81.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...++|+++|.+|+|||||+|++++..... ...+..+.........+++. .+.+|||||..+. ..... ..+
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~---~~~~~---~~~ 93 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDS-AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA---GGWLR---DHC 93 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCG-GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGG---GHHHH---HHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCc-cCCCCcccceEEEEEEECCEEEEEEEEecCCCccc---hhhhH---HHh
Confidence 357999999999999999999998654322 22333344444444455654 6788999998532 11111 112
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
+ ..+|++++|++++.....+....++..+...... ...|+++|+||+|+.+.+..+.+
T Consensus 94 ~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~ 151 (195)
T 3cbq_A 94 L--QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLE 151 (195)
T ss_dssp H--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCTTTCCSCHH
T ss_pred h--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeechhccccCCcCHH
Confidence 2 3789999998886533223344566555554321 23699999999999754444444
No 81
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.65 E-value=1.5e-15 Score=120.07 Aligned_cols=119 Identities=18% Similarity=0.120 Sum_probs=73.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...++|+++|.+|+|||||+|++++..... ...+..+..........++ ..+.+|||||..+. .......+
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---~~~~~~~~--- 98 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRE-NISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF---RSIAKSYF--- 98 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEETTEEEEEEEEECTTCTTC---HHHHHHHH---
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCCccceeEEEEEEECCEEEEEEEEECCCCcch---hhhHHHHH---
Confidence 357999999999999999999999876321 1112222222223334444 47999999998532 22222222
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+|++++|++++.....+....++..+...... ..|+++|+||+|+.
T Consensus 99 ---~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 99 ---RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE--TVPIMLVGNKADIR 146 (199)
T ss_dssp ---HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred ---hhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccc
Confidence 3789999998886533223344566666654332 36999999999985
No 82
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.65 E-value=4.3e-15 Score=116.34 Aligned_cols=118 Identities=14% Similarity=0.118 Sum_probs=75.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+.++|+++|.+|+|||||+|++++.... ....+ |...........+..+.+|||||..+ .......++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~--t~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~- 88 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFN-EDMIP--TVGFNMRKITKGNVTIKLWDIGGQPR-------FRSMWERYC- 88 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCC--CCSEEEEEEEETTEEEEEEEECCSHH-------HHTTHHHHH-
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCC-CccCC--CCceeEEEEEeCCEEEEEEECCCCHh-------HHHHHHHHH-
Confidence 46799999999999999999999977642 11222 22223334556788999999999742 111222233
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++..........++..+..... ....|+++|+||+|+.
T Consensus 89 -~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 137 (188)
T 1zd9_A 89 -RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLP 137 (188)
T ss_dssp -TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTST
T ss_pred -ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCCEEEEEECCCCc
Confidence 589999999887643211222333333332211 1237999999999986
No 83
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.65 E-value=6.1e-15 Score=117.69 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=72.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHH-HHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQ-LIKR 113 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~viDTPG~~~~~~~~~~~~~-~~~~ 113 (243)
+.++|+++|.+|+|||||+|++++... ....++.+.... ...++ +..+.+|||||+.+ ... ....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~ 74 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY--RDTQTSITDSSA--IYKVNNNRGNSLTLIDLPGHES-------LRFQLLDR 74 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC--CCBCCCCSCEEE--EEECSSTTCCEEEEEECCCCHH-------HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--ccccCCcceeeE--EEEecCCCccEEEEEECCCChh-------HHHHHHHH
Confidence 579999999999999999999998763 233333333222 24444 57899999999841 222 2222
Q ss_pred HHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc----ccccccEEEEEeCCCCCC
Q 026113 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG----EQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 114 ~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~----~~~~~~~ivV~tk~D~~~ 168 (243)
++ .++|++++|+++.. +........+++...+. .....|+++|+||+|+..
T Consensus 75 ~~--~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 75 FK--SSARAVVFVVDSAA--FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129 (214)
T ss_dssp HG--GGEEEEEEEEETTT--HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred HH--hhCCEEEEEEECCC--cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence 32 58999999987754 22222233333333221 122469999999999963
No 84
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.64 E-value=3.1e-15 Score=118.02 Aligned_cols=125 Identities=14% Similarity=0.082 Sum_probs=76.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
..+.+||+++|.+|+|||||+|.+++............+......... .....+.+|||||..+...........++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~-- 94 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR-- 94 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH--
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc--
Confidence 346799999999999999999999986432211111111111121111 33468999999998764333200012333
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
++|++++|++++.. +.+....+..++.+........|+++|+||+|+.
T Consensus 95 ----~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 95 ----GTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp ----TCSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred ----cCCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccC
Confidence 89999999888753 3344455555665543222247999999999986
No 85
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.64 E-value=1.2e-15 Score=129.12 Aligned_cols=125 Identities=17% Similarity=0.091 Sum_probs=81.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHH-HHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQ-LIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~viDTPG~~~~~~~~~~~~~-~~~~~~ 115 (243)
..+||+++|.+|+|||||+|.+++.....+...+..|.........+ ++..+.+|||||..+. .+.... ....++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~---~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF---MENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH---HHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH---hhhhhhhHHHHHh
Confidence 46899999999999999999999885444544555565555444444 5679999999998422 001101 111222
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++.....+....+..++..........|+++|+||+|+.
T Consensus 79 --~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~ 128 (307)
T 3r7w_A 79 --QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV 128 (307)
T ss_dssp --TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred --ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence 58999999988865322233334444554443222237999999999986
No 86
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.64 E-value=3.4e-15 Score=116.50 Aligned_cols=120 Identities=17% Similarity=0.286 Sum_probs=81.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
++++|+++|.+|+|||||+|+|++... .....++.+...........+..+.+|||||+.+....... ......++..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSID-EIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHH-HHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHH-HHHHHHHHhc
Confidence 578999999999999999999998763 45555666666666666778899999999999765432211 1112223322
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+|++++|++... + +....++..+.. ...|+++|+||+|+.
T Consensus 84 ~~~~~~i~v~d~~~--~-~~~~~~~~~~~~-----~~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 84 EKPDLVVNIVDATA--L-ERNLYLTLQLME-----MGANLLLALNKMDLA 125 (188)
T ss_dssp HCCSEEEEEEEGGG--H-HHHHHHHHHHHT-----TTCCEEEEEECHHHH
T ss_pred cCCCEEEEEecchh--H-HHHHHHHHHHHh-----cCCCEEEEEEhhhcc
Confidence 36899999966542 2 223334433332 236999999999985
No 87
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.64 E-value=3.9e-15 Score=123.64 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=86.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
..++|+++|.+|+|||||+|+|+|... .++..++.|.........+.+..+.+|||||+.+......+ ....+.++..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSID-ELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHH-HHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHH-HHHHHHhhhc
Confidence 358999999999999999999999875 66677777877777777888999999999999865443322 1123445555
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++... . .. .+.++.+..... ..|+++|+||+|+.
T Consensus 80 ~~~d~vi~v~D~~~--~-~~---~~~~~~~~~~~~-~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 80 GNADVIVDIVDSTC--L-MR---NLFLTLELFEME-VKNIILVLNKFDLL 122 (271)
T ss_dssp TCCSEEEEEEEGGG--H-HH---HHHHHHHHHHTT-CCSEEEEEECHHHH
T ss_pred cCCcEEEEEecCCc--c-hh---hHHHHHHHHhcC-CCCEEEEEEChhcC
Confidence 78999999966543 2 22 222333332222 16999999999974
No 88
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.64 E-value=2.9e-15 Score=114.17 Aligned_cols=114 Identities=13% Similarity=0.107 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~ 119 (243)
+||+++|.+|+|||||+|++++.... ...| |...........+..+.+|||||..+. ......++ .+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~--~~ 67 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI-------RPLWRHYF--QN 67 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS--CCCC--CSSCCEEEEECSSCEEEEEECCCCGGG-------HHHHHHHT--TT
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC--cccC--cCceeEEEEEECCEEEEEEEcCCChhh-------HHHHHHHh--cc
Confidence 58999999999999999999976632 2223 222333445567789999999998431 11222222 58
Q ss_pred CcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 120 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+|++++|++++.....+....++..+..... ....|+++|+||+|+.
T Consensus 68 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~ 114 (164)
T 1r8s_A 68 TQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLP 114 (164)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCeEEEEEECcCCc
Confidence 9999999888643211222233333332211 1236999999999995
No 89
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.64 E-value=1.8e-15 Score=118.55 Aligned_cols=120 Identities=11% Similarity=0.106 Sum_probs=77.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+.++|+++|.+|+|||||+|++++...+..... .|.........+++..+.+|||||..+..... ..++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~- 88 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL--PTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLW-------EHYY- 88 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC--CCSSEEEEEEECSSCEEEEEEECCSTTTGGGG-------GGGG-
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC--CccceeEEEEEECCEEEEEEECCCCHHHHHHH-------HHHH-
Confidence 3679999999999999999999998863332222 23334445556778899999999986443221 1122
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc-cccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~-~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++.....+....++..+...... ....|+++|+||+|+.
T Consensus 89 -~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 139 (190)
T 2h57_A 89 -KEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139 (190)
T ss_dssp -GGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred -hcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence 4889999998876432112223344444433211 0247999999999996
No 90
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.64 E-value=5.2e-15 Score=116.44 Aligned_cols=117 Identities=10% Similarity=0.043 Sum_probs=73.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+.++|+++|.+|+|||||+|++++.... ...+ |...........+..+.+|||||..+..... ...+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---~~~~----- 94 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNICFTVWDVGGQDKIRPLW---RHYF----- 94 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE--EEEE--ETTEEEEEEEETTEEEEEEECC-----CTTH---HHHH-----
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc--ccCC--cCceeEEEEEECCEEEEEEECCCCHhHHHHH---HHHh-----
Confidence 36799999999999999999999987642 2222 2223334456678899999999996543221 1223
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++.....+....++..+..... ....|+++|+||+|+.
T Consensus 95 -~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~ 143 (192)
T 2b6h_A 95 -QNTQGLIFVVDSNDRERVQESADELQKMLQEDE-LRDAVLLVFANKQDMP 143 (192)
T ss_dssp -HTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred -ccCCEEEEEEECCCHHHHHHHHHHHHHHhcccc-cCCCeEEEEEECCCCC
Confidence 389999999888643211222333333332211 1236999999999985
No 91
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=1.1e-15 Score=121.51 Aligned_cols=126 Identities=15% Similarity=0.138 Sum_probs=81.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...++|+++|.+|+|||||+|++++... .....++.+.+.......+++ ..+.+|||||.... ......+
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~ 95 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF-------RSITQSY 95 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHGGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHH
Confidence 3569999999999999999999998763 222233333333344455565 47999999997321 1112222
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~ 174 (243)
+ ..+|++++|++++.....+....++..+...... ..|+++|+||+|+...+....
T Consensus 96 ~--~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~~~v~~ 151 (201)
T 2ew1_A 96 Y--RSANALILTYDITCEESFRCLPEWLREIEQYASN--KVITVLVGNKIDLAERREVSQ 151 (201)
T ss_dssp S--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCSSCH
T ss_pred H--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccCH
Confidence 2 5899999998876432222335566666654432 368999999999864444433
No 92
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.64 E-value=2.1e-15 Score=118.69 Aligned_cols=122 Identities=11% Similarity=0.064 Sum_probs=77.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
.....+|+++|.+|+|||||+|++++.....+...+ |...........+..+.+|||||+.+..... ..++
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~ 84 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA--TVGYNVETFEKGRVAFTVFDMGGAKKFRGLW-------ETYY 84 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC--CSSEEEEEEEETTEEEEEEEECCSGGGGGGG-------GGGC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc--ccceeEEEEEeCCEEEEEEECCCCHhHHHHH-------HHHH
Confidence 346799999999999999999999998753322222 2223344456778899999999985432211 1122
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccc------ccccEEEEEeCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ------IWKRALIVLTHAQLSL 168 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~------~~~~~ivV~tk~D~~~ 168 (243)
.++|++|+|++++..........++..+....... ...|+++|+||+|+..
T Consensus 85 --~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 141 (199)
T 4bas_A 85 --DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG 141 (199)
T ss_dssp --TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred --hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence 58999999988865322222333444433321110 1479999999999963
No 93
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.64 E-value=1.6e-15 Score=116.26 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=76.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+.++|+++|.+|+|||||+|++++.... ...+ |.........+.+..+.+|||||..+.... ...++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-------~~~~~- 72 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV--TTIP--TIGFNVETVTYKNLKFQVWDLGGLTSIRPY-------WRCYY- 72 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC--CCCC--CSSEEEEEEEETTEEEEEEEECCCGGGGGG-------GGGGC-
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC--CcCC--cCccceEEEEECCEEEEEEECCCChhhhHH-------HHHHh-
Confidence 36799999999999999999999977632 2222 223334455667889999999998532211 11122
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
.++|++++|++++..........++..+..... ....|+++|+||+|+.+
T Consensus 73 -~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 73 -SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDMEQ 122 (171)
T ss_dssp -TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred -ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hCCCEEEEEEECCCCcC
Confidence 589999999887643211222233333322211 12379999999999863
No 94
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=3.3e-15 Score=117.07 Aligned_cols=119 Identities=18% Similarity=0.082 Sum_probs=76.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
+.++|+++|.+|+|||||+|++++.... ....+..+...........+ ..+.+|||||..+..... ...+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---~~~~---- 85 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFD-PELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT---PSYY---- 85 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSH---HHHH----
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhh---HHHh----
Confidence 5699999999999999999999987632 22222223233233333443 579999999985443222 1122
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+|++++|++++..........++..+...... ...|+++|+||+|+.
T Consensus 86 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 86 --RGAQGVILVYDVTRRDTFVKLDNWLNELETYCTR-NDIVNMLVGNKIDKE 134 (195)
T ss_dssp --TTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSC-SCCEEEEEEECTTSS
T ss_pred --ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCc-CCCcEEEEEECCcCc
Confidence 4899999998886532222333455444443221 236899999999984
No 95
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.63 E-value=3e-15 Score=117.68 Aligned_cols=117 Identities=9% Similarity=0.073 Sum_probs=76.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.++++|+++|.+|+|||||+|++++...... ..|.........+++..+.+|||||+.+...... .++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~- 88 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL----QPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK-------DYF- 88 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCC----CCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGG-------GGC-
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcc----ccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHH-------HHH-
Confidence 3578999999999999999999998764221 1233334455667889999999999865432211 111
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++.....+....++..+..... ....|+++|+||+|+.
T Consensus 89 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 137 (190)
T 1m2o_B 89 -PEVNGIVFLVDAADPERFDEARVELDALFNIAE-LKDVPFVILGNKIDAP 137 (190)
T ss_dssp -TTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTST
T ss_pred -hcCCEEEEEEECCChHHHHHHHHHHHHHHcchh-hcCCCEEEEEECCCCc
Confidence 489999999888653222223344444433211 1237999999999986
No 96
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.63 E-value=2.3e-15 Score=118.36 Aligned_cols=118 Identities=18% Similarity=0.161 Sum_probs=77.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...+||+++|.+|+|||||+|++++... .....++...........++. .+.+|||||..+...... .+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~ 91 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRP-------LS 91 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGG-------GG
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhH-------hh
Confidence 4679999999999999999999998763 222222222222333445554 569999999754332211 11
Q ss_pred HhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
..++|++++|++++... +......++..+..... ..|+++|+||+|+.+
T Consensus 92 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 92 --YADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID---TAKTVLVGLKVDLRK 141 (194)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSEEEEEEECGGGCC
T ss_pred --ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 15899999998886532 22223456666665432 269999999999864
No 97
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.63 E-value=9.6e-16 Score=136.85 Aligned_cols=116 Identities=26% Similarity=0.378 Sum_probs=86.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC-CCCCCc-----HHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI-EGGYVN-----YHAIQLI 111 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~-~~~~~~-----~~~~~~~ 111 (243)
..++|+++|.+|+|||||+|+|++.+...+.+.+++|.+........++.++.+|||||+. ++.... ......+
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 3589999999999999999999998766678888888887777777889999999999997 543221 1122333
Q ss_pred HHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 112 KRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 112 ~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+|++|+|+++... .+..+..+++.+ . .+|+++|+||+|+.
T Consensus 322 ------~~aD~vl~VvD~s~~-~s~~~~~il~~l----~---~~piivV~NK~DL~ 363 (482)
T 1xzp_A 322 ------EKADIVLFVLDASSP-LDEEDRKILERI----K---NKRYLVVINKVDVV 363 (482)
T ss_dssp ------HHCSEEEEEEETTSC-CCHHHHHHHHHH----T---TSSEEEEEEECSSC
T ss_pred ------hcccEEEEEecCCCC-CCHHHHHHHHHh----c---CCCEEEEEECcccc
Confidence 379999999887542 333444444332 2 36999999999995
No 98
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.63 E-value=7.7e-16 Score=135.31 Aligned_cols=123 Identities=21% Similarity=0.290 Sum_probs=83.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
..++|+++|.+|+|||||+|+|++.....+...+++|.........+.+. ++.+|||||+.+.........+....++
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l- 111 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF- 111 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH-
Confidence 56899999999999999999999988655666666777666666666665 8999999999876654322222233333
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~ 170 (243)
..+|++|+|+++ ...+.+..++..+.+. ..|+++|+||+|+...+
T Consensus 112 -~~aD~vllVvD~---~~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 112 -YRADCGILVTDS---APTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp -TSCSEEEEECSS---SCCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCC
T ss_pred -hcCCEEEEEEeC---CChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCcc
Confidence 489999999554 4556677777777765 36999999999996443
No 99
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=4.7e-15 Score=116.47 Aligned_cols=117 Identities=19% Similarity=0.156 Sum_probs=78.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||+|++++... .....+++..........++ ..+.+|||||..+...... .+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~- 86 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP-------LS- 86 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGG-------GG-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHH-------Hh-
Confidence 568999999999999999999998753 22222333233333444555 5789999999865543221 11
Q ss_pred hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
..++|++++|++++... +......++..+....+ ..|+++|+||+|+.+
T Consensus 87 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 87 -YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRD 136 (194)
T ss_dssp -CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTT
T ss_pred -cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 15899999998886532 22222356666666533 369999999999863
No 100
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.63 E-value=4.2e-15 Score=117.73 Aligned_cols=120 Identities=16% Similarity=0.110 Sum_probs=78.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||+|++++.... ....+..+.+........++ ..+.+|||||..+...... .++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~ 78 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGV-------AFY 78 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCC-------GGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHH-------HHH
Confidence 5799999999999999999999987642 22223333333333444444 5799999999754332221 111
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc--cccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++.....+....++..+...... ....|+++|+||+|+.
T Consensus 79 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 79 --RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred --hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 4899999998886533223334566666555431 1236999999999996
No 101
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.63 E-value=1.8e-15 Score=117.07 Aligned_cols=121 Identities=17% Similarity=0.096 Sum_probs=74.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKR 113 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~viDTPG~~~~~~~~~~~~~~~~~ 113 (243)
...++|+++|.+|+|||||+|++++.... ....+..+.+........+ ...+.+|||||..+... ....
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~ 77 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYS-QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS-------LGVA 77 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCC-TTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------C
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCC-cccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhh-------hhHH
Confidence 35799999999999999999999987632 2222333333334444444 35899999999743211 1111
Q ss_pred HHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhc--ccccccEEEEEeCCCCC
Q 026113 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLS 167 (243)
Q Consensus 114 ~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivV~tk~D~~ 167 (243)
++ ..+|++++|++++.....+....++..+..... .....|+++|+||+|+.
T Consensus 78 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 78 FY--RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp CS--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred Hh--hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 11 589999999888654322334556666655543 11236999999999985
No 102
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.63 E-value=3.3e-15 Score=118.03 Aligned_cols=118 Identities=19% Similarity=0.150 Sum_probs=75.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...++|+++|.+|+|||||+|.+++... .....+++..........++. .+.+|||||..+...... .+
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~ 88 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY--PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRP-------LC 88 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGG-------GG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhH-------hh
Confidence 4679999999999999999999998762 233333343334444555664 677999999976543322 11
Q ss_pred HhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
+ .++|++++|++++... +......|+..+..... ..|+++|+||+|+.+
T Consensus 89 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 89 Y--TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRE 138 (201)
T ss_dssp G--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGG
T ss_pred c--CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhh
Confidence 1 5899999998886532 22222246666665543 379999999999863
No 103
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.63 E-value=2.3e-15 Score=120.52 Aligned_cols=118 Identities=19% Similarity=0.212 Sum_probs=68.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
.++++|+++|.+|+|||||+|++++.... ....+++..........++. .+.+|||||..+..... ..+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~-------~~~ 102 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFP--ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLR-------PLF 102 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC--------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHH-------HHH
Confidence 46799999999999999999999987632 22222222333333445554 78999999985432211 112
Q ss_pred HhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
+ .++|++++|++++... +......++..+..... ..|+++|+||+|+.+
T Consensus 103 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 103 Y--PDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK---KVPIIVVGCKTDLRK 152 (214)
T ss_dssp ----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECGGGGS
T ss_pred h--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhhc
Confidence 2 4899999998886432 22222245666655432 369999999999863
No 104
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.63 E-value=7.7e-16 Score=137.06 Aligned_cols=122 Identities=18% Similarity=0.258 Sum_probs=77.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLL 116 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~-~~~~~~~~~~~~~ 116 (243)
...+|+++|++|+|||||+|+|+|...+.+.+.++.|.+.......+.+..+.+|||||+...... .++..+....++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~- 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM- 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH-
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH-
Confidence 457999999999999999999999887667777888887777778888999999999998743322 222333333333
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++|+|++... .++..+..+.+.+++ ..+|+++|+||+|+.
T Consensus 101 -~~ad~il~VvD~~~-~~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 101 -DEADVIIFMVNGRE-GVTAADEEVAKILYR-----TKKPVVLAVNKLDNT 144 (456)
T ss_dssp -HHCSEEEEEEESSS-CSCHHHHHHHHHHTT-----CCSCEEEEEECC---
T ss_pred -hhCCEEEEEEeCCC-CCChHHHHHHHHHHH-----cCCCEEEEEECccch
Confidence 47999999977543 366667666655543 247999999999985
No 105
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.63 E-value=9.3e-16 Score=121.45 Aligned_cols=122 Identities=15% Similarity=0.129 Sum_probs=54.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCC-CeeEEEEeeeC----CeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRA----GFTLNIVDTPGLIEGGYVNYHAIQLIK 112 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t-~~~~~~~~~~~----~~~~~viDTPG~~~~~~~~~~~~~~~~ 112 (243)
..++|+++|.+|+|||||+|++++..........+++ .+.......++ ...+.+|||||+. .......
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~~~~ 91 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD-------LYKEQIS 91 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH-------HHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH-------HHHHHHH
Confidence 4689999999999999999999988322222222222 12333344455 3589999999983 1111112
Q ss_pred HHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcc-cccccEEEEEeCCCCCC
Q 026113 113 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSL 168 (243)
Q Consensus 113 ~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~-~~~~~~ivV~tk~D~~~ 168 (243)
.+ ..++|++++|++++.....+....++..+....+. ....|+++|+||+|+.+
T Consensus 92 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 92 QY--WNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp TT--CCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred HH--HhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 12 25899999998886533223344666666655430 02369999999999964
No 106
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.62 E-value=1.9e-15 Score=117.65 Aligned_cols=118 Identities=8% Similarity=0.025 Sum_probs=74.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..+.++|+++|.+|+|||||+|++++........... .......+++..+.+|||||+.+..... ..++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~ 86 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG----SNVEEIVINNTRFLMWDIGGQESLRSSW-------NTYY 86 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSS----SSCEEEEETTEEEEEEEESSSGGGTCGG-------GGGG
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCc----eeeEEEEECCEEEEEEECCCCHhHHHHH-------HHHh
Confidence 3467999999999999999999999887522222111 1123445678999999999985433221 1122
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++.....+....++..+..... ....|+++|+||+|+.
T Consensus 87 --~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 135 (181)
T 2h17_A 87 --TNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVK 135 (181)
T ss_dssp --TTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCcc
Confidence 589999999887643211222333333332211 1236999999999985
No 107
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.62 E-value=2.8e-15 Score=118.65 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=72.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.++++|+++|.+|+|||||+|++.+....... + |.........+++..+.+|||||+........ .++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~--~--t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~~- 90 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV--P--TLHPTSEELTIAGMTFTTFDLGGHIQARRVWK-------NYL- 90 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--------C--CCCCSCEEEEETTEEEEEEEECC----CCGGG-------GGG-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccC--C--CCCceeEEEEECCEEEEEEECCCcHhhHHHHH-------HHH-
Confidence 46789999999999999999999987642211 1 22222345567789999999999865433211 122
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|+++......+....++..+.+... ....|+++|+||+|+.
T Consensus 91 -~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 91 -PAINGIVFLVDCADHERLLESKEELDSLMTDET-IANVPILILGNKIDRP 139 (198)
T ss_dssp -GGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTSCEEEEEECTTST
T ss_pred -hcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEEECCCcc
Confidence 488999999887643212223334444433211 1237999999999985
No 108
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.62 E-value=4.2e-15 Score=123.58 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=81.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~ 118 (243)
.++|+++|.+|+|||||+|+|+|... .++..++.|.......... +..+.+|||||+.+......+ ....+.++...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~-e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPE-AKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHH-HHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChH-HHHHHHHHhcC
Confidence 58999999999999999999999863 5666777776655555544 778999999999765432211 11223444445
Q ss_pred CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.+|++++|++... . +....+...+.+ ...|+++|+||+|+.
T Consensus 80 ~~d~vi~V~D~t~--~-e~~~~~~~~l~~-----~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 80 RADSILNVVDATN--L-ERNLYLTTQLIE-----TGIPVTIALNMIDVL 120 (272)
T ss_dssp CCSEEEEEEEGGG--H-HHHHHHHHHHHH-----TCSCEEEEEECHHHH
T ss_pred CCCEEEEEecCCc--h-HhHHHHHHHHHh-----cCCCEEEEEEChhhC
Confidence 7999999966643 2 222233333333 236999999999985
No 109
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=1.6e-15 Score=119.06 Aligned_cols=125 Identities=14% Similarity=0.121 Sum_probs=79.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEE--EEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM--VSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..+||+++|.+|+|||||+|++++..... ...+..+..... ......+..+.+|||||.... ......++
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~ 93 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTP-AFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY-------RTITTAYY 93 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCC-CEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHC-------HHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCc-ccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHH-------HHHHHHHH
Confidence 46899999999999999999999765321 111111222222 222334568999999996311 11222233
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~ 174 (243)
.++|++++|++++.....+....++..+...... ..|+++|+||+|+.+.+....
T Consensus 94 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~ 148 (191)
T 3dz8_A 94 --RGAMGFILMYDITNEESFNAVQDWATQIKTYSWD--NAQVILVGNKCDMEEERVVPT 148 (191)
T ss_dssp --TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCH
T ss_pred --ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccCH
Confidence 5899999998886533223445567667664433 369999999999864444443
No 110
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.62 E-value=1.2e-14 Score=125.37 Aligned_cols=125 Identities=17% Similarity=0.242 Sum_probs=86.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH-HHH-HHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY-HAI-QLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~-~~~-~~~~~~ 114 (243)
...++|+++|.+|+|||||+|.|++... .+...+..|...........+..+.+|||||+.+...... ... ..+..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~- 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILA- 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHH-
Confidence 4678999999999999999999999873 4555556666655555566788999999999976432211 111 11111
Q ss_pred HhcCCCcEEEEEEeCCCcc-cC-hhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~-~~-~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
....+|++|+|++++... +. +....++..+...++ ..|+++|+||+|+.
T Consensus 243 -~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~ 293 (357)
T 2e87_A 243 -LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVA 293 (357)
T ss_dssp -GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTC
T ss_pred -HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccC
Confidence 124689999997765432 12 334567777776654 37999999999985
No 111
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.62 E-value=8.8e-16 Score=135.93 Aligned_cols=121 Identities=18% Similarity=0.251 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHHHhcC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLNK 118 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~-~~~~~~~~~~~~~~~ 118 (243)
.+|+++|++|+|||||+|+|+|...+.+.+.++.|.+.......+.+..+.+|||||+...... .+........++ .
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~--~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM--D 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHH--H
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH--H
Confidence 6899999999999999999999887667777888877777778888999999999999633211 112222222233 4
Q ss_pred CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
++|++|+|++... ..+..+..+.+.+++ ..+|+++|+||+|+.+
T Consensus 82 ~ad~il~vvD~~~-~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 82 EADVIIFMVNGRE-GVTAADEEVAKILYR-----TKKPVVLAVNKLDNTE 125 (436)
T ss_dssp HCSEEEEEEETTT-CSCHHHHHHHHHHTT-----CCSCEEEEEECCCC--
T ss_pred hCCEEEEEEeCCC-CCCHHHHHHHHHHHH-----cCCCEEEEEECccCcc
Confidence 8999999977653 345555544444432 2379999999999853
No 112
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=1.3e-14 Score=116.29 Aligned_cols=129 Identities=14% Similarity=0.069 Sum_probs=79.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..+||+++|.+|+|||||+|.+++.........++.+.+.......+++. .+.+|||+|... . .+.+...
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~------~-~~~l~~~- 107 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG------E-NEWLHDH- 107 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH------H-HHHHHHC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc------h-hhhHHHH-
Confidence 56999999999999999999999865433333333444433444556665 567899999742 1 1222221
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
....+|++++|++++.....+....+...+.+... ....|+++|+||+|+.+.+....+
T Consensus 108 ~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r~v~~~ 166 (211)
T 2g3y_A 108 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVS 166 (211)
T ss_dssp CCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHH
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcCceEeHH
Confidence 23578999999988753322223344444443221 123699999999999644444443
No 113
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.62 E-value=4e-15 Score=116.40 Aligned_cols=118 Identities=16% Similarity=0.086 Sum_probs=76.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.++++|+++|.+|+|||||+|++++..... ..+ |...........+..+.+|||||+.+....... .+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~---~~----- 87 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT--TVP--TVGVNLETLQYKNISFEVWDLGGQTGVRPYWRC---YF----- 87 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE--ECS--STTCCEEEEEETTEEEEEEEECCSSSSCCCCSS---SS-----
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC--cCC--CCceEEEEEEECCEEEEEEECCCCHhHHHHHHH---Hh-----
Confidence 368999999999999999999998776422 222 222333445567889999999998654433221 11
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
.++|++++|++++.....+....++..+..... ....|+++|+||+|+.+
T Consensus 88 -~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 88 -SDTDAVIYVVDSTDRDRMGVAKHELYALLDEDE-LRKSLLLIFANKQDLPD 137 (189)
T ss_dssp -TTCCEEEEEEETTCCTTHHHHHHHHHHHHTCST-TTTCEEEEEEECTTSTT
T ss_pred -hcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhh-cCCCeEEEEEECCCCcC
Confidence 489999999887643211222233333322111 12369999999999863
No 114
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.61 E-value=1.4e-15 Score=122.15 Aligned_cols=121 Identities=12% Similarity=0.100 Sum_probs=77.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCc-ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKA-VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~llg~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
....+||+++|.+|+|||||+|+++.... .......+.+...........+..+.+|||||.......... .+
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---~~--- 85 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG---YY--- 85 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHH---HH---
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHH---HH---
Confidence 34679999999999999999999664431 112222222222222222233468999999997654433322 22
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
.++|++++|++++..........++..+..... ..|+++|+||+|+.+
T Consensus 86 ---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 86 ---IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKD 133 (221)
T ss_dssp ---TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSS
T ss_pred ---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCcccc
Confidence 489999999888754322334456666666543 369999999999863
No 115
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.61 E-value=1.3e-14 Score=113.42 Aligned_cols=114 Identities=17% Similarity=0.046 Sum_probs=76.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKR 113 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~ 113 (243)
..+.+||+++|.+|+|||||+|.+++..... .. .+ |.........+++. .+.+|||||..... .++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~-~~-~~-t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~- 84 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQ-EE-SP-EGGRFKKEIVVDGQSYLLLIRDEGGPPELQ--------FAA- 84 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCC-CC-CT-TCEEEEEEEEETTEEEEEEEEECSSSCCHH--------HHH-
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCC-Cc-CC-CcceEEEEEEECCEEEEEEEEECCCChhhh--------eec-
Confidence 3467999999999999999999999876321 11 12 22333344556664 67789999985321 232
Q ss_pred HHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 114 ~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.+|++++|++++.....+....|+..+..... ....|+++|+||+|+.
T Consensus 85 -----~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 85 -----WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAIS 132 (184)
T ss_dssp -----HCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCB
T ss_pred -----CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence 68999999888753322233445555554422 1236999999999984
No 116
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=3.2e-15 Score=118.95 Aligned_cols=116 Identities=15% Similarity=0.140 Sum_probs=76.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
.+++|+++|.+|+|||||+|++++..... ...+. +...........+ ..+.+|||||..+....... +
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~- 93 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPE-VYVPT-VFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL-------S- 93 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGG-------G-
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCC-cCCCc-ccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHh-------h-
Confidence 56899999999999999999999876422 11122 2222222344555 47899999998654432211 1
Q ss_pred hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
...+|++++|++++... +......++..+..... ..|+++|+||+|+.
T Consensus 94 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 142 (207)
T 2fv8_A 94 -YPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLR 142 (207)
T ss_dssp -CTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGG
T ss_pred -cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhh
Confidence 14899999998887532 33333556666665432 36999999999986
No 117
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.61 E-value=5.7e-15 Score=114.63 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=72.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.++++|+++|.+|+|||||+|++++....... ++.. .......+.+..+.+|||||+.+...... .++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~t~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~- 83 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTK--PTIG--FNVETLSYKNLKLNVWDLGGQTSIRPYWR-------CYY- 83 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC--SSTT--CCEEEEEETTEEEEEEEEC----CCTTGG-------GTT-
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccC--CcCc--cceEEEEECCEEEEEEECCCCHhHHHHHH-------HHh-
Confidence 36899999999999999999999977642221 2222 22344556788999999999965433221 111
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++.....+....++..+..... ....|+++|+||+|+.
T Consensus 84 -~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~ 132 (183)
T 1moz_A 84 -ADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE-LQDAALLVFANKQDQP 132 (183)
T ss_dssp -TTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST-TSSCEEEEEEECTTST
T ss_pred -ccCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-hCCCeEEEEEECCCCC
Confidence 489999999887543211222233333322110 2347999999999985
No 118
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.61 E-value=5.9e-16 Score=137.62 Aligned_cols=121 Identities=19% Similarity=0.237 Sum_probs=78.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-h
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-L 116 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~-~ 116 (243)
..++|+++|.+|+|||||+|+|++.+...+...+++|.+........+|.++.+|||||+.++....+.. .+++.. .
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~--gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKI--GVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC----------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHH--HHHHHhhh
Confidence 4689999999999999999999998765677777777766555667789999999999996543221110 012222 2
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
...+|++|+|++... ..+..+..+++.+.. +|+++|+||+|+.+
T Consensus 301 ~~~aD~vl~VvD~s~-~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~ 344 (462)
T 3geh_A 301 ANTADLVLLTIDAAT-GWTTGDQEIYEQVKH-------RPLILVMNKIDLVE 344 (462)
T ss_dssp CCSCSEEEEEEETTT-CSCHHHHHHHHHHTT-------SCEEEEEECTTSSC
T ss_pred hhcCCEEEEEeccCC-CCCHHHHHHHHhccC-------CcEEEEEECCCCCc
Confidence 368999999987754 345555555444322 59999999999864
No 119
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.61 E-value=2.6e-15 Score=116.63 Aligned_cols=116 Identities=17% Similarity=0.121 Sum_probs=76.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
+.++|+++|.+|+|||||+|++++.... ....+++...........+. .+.+|||||+.+...... .+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~- 73 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP-------LS- 73 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGG-------GG-
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHH-------Hh-
Confidence 5799999999999999999999976532 22222222223333444554 577999999854332211 11
Q ss_pred hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
...+|++++|++++... +......++..+....+ ..|+++|+||+|+.
T Consensus 74 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 122 (186)
T 1mh1_A 74 -YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR 122 (186)
T ss_dssp -CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHH
T ss_pred -ccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccc
Confidence 15899999998886532 22222356666665543 37999999999986
No 120
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.61 E-value=6.5e-15 Score=130.46 Aligned_cols=126 Identities=21% Similarity=0.332 Sum_probs=81.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---------HHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---------YHAI 108 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~---------~~~~ 108 (243)
..++|+++|++|+|||||+|+|+|.....+++.+++|.++......++|..+.+|||||+....... ....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 4589999999999999999999999866677778777776666777889999999999984322111 1112
Q ss_pred HHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 109 QLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 109 ~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
..+ ..+|++++|+++.. ..+..+..+...+.. . .+++++|+||+|+.+.+....+
T Consensus 259 ~~i------~~ad~vllv~d~~~-~~~~~~~~i~~~l~~-~----~~~~ilv~NK~Dl~~~~~~~~~ 313 (439)
T 1mky_A 259 DSI------EKADVVVIVLDATQ-GITRQDQRMAGLMER-R----GRASVVVFNKWDLVVHREKRYD 313 (439)
T ss_dssp HHH------HHCSEEEEEEETTT-CCCHHHHHHHHHHHH-T----TCEEEEEEECGGGSTTGGGCHH
T ss_pred HHH------hhCCEEEEEEeCCC-CCCHHHHHHHHHHHH-c----CCCEEEEEECccCCCchhhHHH
Confidence 222 36899999977653 234444444443332 2 3699999999998644333333
No 121
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.60 E-value=4.5e-15 Score=117.53 Aligned_cols=116 Identities=15% Similarity=0.133 Sum_probs=76.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..+||+++|.+|+|||||+|++++.... ....++.+... ......++ ..+.+|||||..+...... .+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~- 93 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENY-IADIEVDGKQVELALWDTAGQEDYDRLRP-------LS- 93 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCCC-EEEEEETTEEEEEEEECCCCSGGGTTTGG-------GG-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccceE-EEEEEECCEEEEEEEEECCCchhHHHHHH-------Hh-
Confidence 5799999999999999999999987642 22222222222 22334455 4789999999754332221 11
Q ss_pred hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
...+|++++|++++... +......++..+..... ..|+++|+||+|+.
T Consensus 94 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 142 (201)
T 2gco_A 94 -YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLR 142 (201)
T ss_dssp -CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGT
T ss_pred -cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhh
Confidence 15899999998887532 33333456666665432 36999999999986
No 122
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.60 E-value=2.3e-16 Score=124.73 Aligned_cols=122 Identities=20% Similarity=0.152 Sum_probs=76.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...+||+++|.+|+|||||+|+|++.... ....+..+..........++ ..+.+|||||..+....... .+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---~~--- 103 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSS---YY--- 103 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCC-CHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHH---Hh---
Confidence 35699999999999999999999987642 22222333334444455566 57999999998655433221 12
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~ 170 (243)
..+|++++|++++.....+....++..+...... ..|+++|+||+|+.+.+
T Consensus 104 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~~ 154 (199)
T 3l0i_B 104 ---RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTKK 154 (199)
T ss_dssp ---CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C--CSEEEEC-CCSSCC--C
T ss_pred ---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC--CCCEEEEEECccCCccc
Confidence 4899999997775432222334455555443322 36999999999986443
No 123
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.59 E-value=2e-15 Score=120.02 Aligned_cols=117 Identities=18% Similarity=0.138 Sum_probs=75.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
.+.+||+++|.+|+|||||++++++... .....+++..........++. .+.+|||||+.+...... .+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~ 98 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP-------LS 98 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGG-------GG
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHH-------HH
Confidence 4679999999999999999999997653 222233333333333445554 566999999854332221 11
Q ss_pred HhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..++|++++|++++... +......++..+..... ..|+++|+||+|+.
T Consensus 99 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 147 (204)
T 4gzl_A 99 --YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR 147 (204)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECHHHH
T ss_pred --hccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhc
Confidence 15899999998886533 22222356666665532 37999999999986
No 124
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.59 E-value=4.4e-15 Score=118.96 Aligned_cols=118 Identities=15% Similarity=0.099 Sum_probs=76.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...+||+++|.+|+|||||+|.+++.... ....++............ ...+.+|||||......... .+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~ 95 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRP-------LC 95 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGG-------GG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHH-------HH
Confidence 36799999999999999999999987632 222222222222222333 35799999999854332221 11
Q ss_pred HhcCCCcEEEEEEeCCCcccChh-HHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNL-DKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
+ .++|++++|++++.....+. ...|+..+..... ..|+++|+||+|+.+
T Consensus 96 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 96 Y--SDSDAVLLCFDISRPETVDSALKKWRTEILDYCP---STRVLLIGCKTDLRT 145 (214)
T ss_dssp C--TTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT---TSEEEEEEECGGGGG
T ss_pred c--CCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 1 58999999988865332222 4566777766542 369999999999863
No 125
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.59 E-value=3.5e-15 Score=119.31 Aligned_cols=124 Identities=15% Similarity=0.105 Sum_probs=73.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC------------CeEEEEEeCCCCCCCCCCc
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA------------GFTLNIVDTPGLIEGGYVN 104 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~------------~~~~~viDTPG~~~~~~~~ 104 (243)
...++|+++|.+|+|||||+|+|++.... ....++.+.........+. ...+.+|||||..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~------ 95 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE------ 95 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCC-CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCC-cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH------
Confidence 35699999999999999999999987631 1111111111111222222 4579999999962
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccc--ccccEEEEEeCCCCCCCCCCC
Q 026113 105 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLSLPDRLD 173 (243)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~tk~D~~~~~~~~ 173 (243)
........++ ..+|++++|++++.....+ ....++....... ...|+++|+||+|+.+.....
T Consensus 96 -~~~~~~~~~~--~~~d~iilV~D~~~~~s~~---~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~ 160 (217)
T 2f7s_A 96 -RFRSLTTAFF--RDAMGFLLMFDLTSQQSFL---NVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN 160 (217)
T ss_dssp -HHHHHHHHHH--TTCCEEEEEEETTCHHHHH---HHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC
T ss_pred -hHHhHHHHHh--cCCCEEEEEEECcCHHHHH---HHHHHHHHHHHhcCcCCCCEEEEEECCccccccccC
Confidence 2222223333 5899999998876432111 1222333222111 236899999999986443433
No 126
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.58 E-value=5.4e-15 Score=117.79 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=76.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||++.+++... .....+++..........++ ..+.+|||||..+...... .++
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~ 78 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRP-------LSY 78 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--C-------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHH-------hhc
Confidence 579999999999999999999997763 22222222223333334444 4899999999965443221 111
Q ss_pred hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++... +......|+..+....+ ..|+++|+||+|+.
T Consensus 79 --~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 126 (212)
T 2j0v_A 79 --RGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLR 126 (212)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHH
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhh
Confidence 5899999998886432 22222356666665533 36999999999985
No 127
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.58 E-value=2e-14 Score=121.61 Aligned_cols=125 Identities=21% Similarity=0.286 Sum_probs=72.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCee---EEEE--------------------------------
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRP---VMVS-------------------------------- 81 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~---~~~~-------------------------------- 81 (243)
....+|+++|.+|+|||||+|+|+|......... .+|..+ ....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~-~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSG-IVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC---------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCC-ceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 3567999999999999999999999875221110 001111 0000
Q ss_pred -------------------------eeeCCeEEEEEeCCCCCCCC------CCcHHHHHHHHHHHhcCCCcEEEEEEeCC
Q 026113 82 -------------------------RSRAGFTLNIVDTPGLIEGG------YVNYHAIQLIKRFLLNKTIDVLLYVDRLD 130 (243)
Q Consensus 82 -------------------------~~~~~~~~~viDTPG~~~~~------~~~~~~~~~~~~~~~~~~~~~il~v~~~d 130 (243)
....+.++.+|||||+.+.. ............++ ..+|++++|++..
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iilvvd~~ 178 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI--KKQNAIIVAVTPA 178 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHH--HSTTEEEEEEEES
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH--cCCCeEEEEEEec
Confidence 11134579999999997522 12222333334444 3889999997653
Q ss_pred CcccChhH-HHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 131 VYRVDNLD-KQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 131 ~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
...+...+ ..+++.+.. ...|+++|+||+|+.+.
T Consensus 179 ~~~~~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 179 NTDLANSDALQLAKEVDP-----EGKRTIGVITKLDLMDK 213 (315)
T ss_dssp SSCSTTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCS
T ss_pred CcchhhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCc
Confidence 22333222 344444332 23799999999998744
No 128
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.58 E-value=3.5e-15 Score=116.36 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=74.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||+|++++.... ....++...........++ ..+.+|||||..+...... .+
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~- 75 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP-------LS- 75 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGG-------GG-
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHH-------hh-
Confidence 5799999999999999999999987632 1111222112222233333 5789999999854322211 11
Q ss_pred hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..++|++++|++++... +......|+..+..... ..|+++|+||+|+.
T Consensus 76 -~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 76 -YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR 124 (184)
T ss_dssp -CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGG
T ss_pred -cCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhh
Confidence 25899999998886532 22222455566655432 36999999999986
No 129
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.58 E-value=2e-14 Score=113.14 Aligned_cols=127 Identities=15% Similarity=0.114 Sum_probs=76.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCC-CCCcHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEG-GYVNYHAIQLIKRF 114 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~-~~~~~~~~~~~~~~ 114 (243)
..+||+++|.+|+|||||+|.+++.........++.+.+.......+++. .+.+|||+|.... ...... .+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~---~~--- 78 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDH---CM--- 78 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGG---HH---
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHh---hc---
Confidence 56999999999999999999999754323333333333333444456665 5678999997542 111111 12
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~ 174 (243)
..+|++++|++++.....+....+...+...... ...|+++|+||+|+...+....
T Consensus 79 ---~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~~r~v~~ 134 (192)
T 2cjw_A 79 ---QVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVRXREVSV 134 (192)
T ss_dssp ---HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGGGCCSCH
T ss_pred ---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhccccccH
Confidence 2679999998887543223334455555544221 2369999999999864344443
No 130
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.57 E-value=2.8e-15 Score=126.46 Aligned_cols=120 Identities=17% Similarity=0.228 Sum_probs=82.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC-CCCCCcHHHHHHHHHHH-
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI-EGGYVNYHAIQLIKRFL- 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~-~~~~~~~~~~~~~~~~~- 115 (243)
+..+|+++|++|+|||||+|+|+|.....++..+.+|...........+.++.+|||||+. .. .....+.+....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~~ 83 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE---KRAINRLMNKAAS 83 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH---HHHHHHHHTCCTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccc---hhhHHHHHHHHHH
Confidence 4568999999999999999999999876666666666655555566778899999999995 11 111111111111
Q ss_pred -hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 -LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 -~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
....+|++++|++... ++..+..+++.+.. ...|+++|+||+|+.
T Consensus 84 ~~l~~~D~vl~Vvd~~~--~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR--WTPDDEMVLNKLRE-----GKAPVILAVNKVDNV 129 (301)
T ss_dssp SCCCCEEEEEEEEETTC--CCHHHHHHHHHHHS-----SSSCEEEEEESTTTC
T ss_pred HHHhcCCEEEEEEeCCC--CCHHHHHHHHHHHh-----cCCCEEEEEECcccC
Confidence 1257899999977754 66655544443331 236999999999985
No 131
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.57 E-value=2.8e-14 Score=114.12 Aligned_cols=124 Identities=15% Similarity=0.160 Sum_probs=75.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
...++|+++|.+|+|||||+|+|++....... . +..+ .....+.+..+.+|||||+.... ......++...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~--~--~~~~-~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~- 80 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV--V--SQEP-LSAADYDGSGVTLVDFPGHVKLR---YKLSDYLKTRA- 80 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBC--C--CSSC-EEETTGGGSSCEEEECCCCGGGT---HHHHHHHHHHG-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCee--e--ecCc-eEEEEeeCceEEEEECCCcHHHH---HHHHHHHHhcc-
Confidence 36799999999999999999999987632110 0 0011 11122356689999999995432 22233333211
Q ss_pred cCCCcEEEEEEeCC-CcccChhHHHHHHHHHHHhc--ccccccEEEEEeCCCCCCCC
Q 026113 117 NKTIDVLLYVDRLD-VYRVDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLSLPD 170 (243)
Q Consensus 117 ~~~~~~il~v~~~d-~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivV~tk~D~~~~~ 170 (243)
..+|++++|+++. ..........++..+..... .....|+++|+||+|+....
T Consensus 81 -~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 81 -KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp -GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred -ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 2489999998876 32222334444444443321 11237999999999996443
No 132
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.56 E-value=2.9e-15 Score=116.08 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=69.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++|+++|.+|+|||||+|++++... . ....+++..........++ ..+.+|||||..+...... .++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~ 77 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF-P-TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRP-------LSY 77 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC-C-----------CBCCCC-------CEEECCCC-CTTTTTGG-------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-C-CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHH-------hhc
Confidence 579999999999999999999997753 1 1211111111111122233 4567999999865432221 111
Q ss_pred hcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++++|++++... +......++..+..... ..|+++|+||+|+.
T Consensus 78 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 125 (182)
T 3bwd_D 78 --RGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLR 125 (182)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHH
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhh
Confidence 4899999998886432 22222346666666533 36999999999985
No 133
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.5e-14 Score=124.97 Aligned_cols=117 Identities=18% Similarity=0.256 Sum_probs=85.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc----HHHHHHHHHHH
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN----YHAIQLIKRFL 115 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~----~~~~~~~~~~~ 115 (243)
.+|.++|.+|+|||||+|+|++... .+.++|.+|.++......+.+.+++++||||+....... ..+++.++
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~-~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~--- 148 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTES-EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR--- 148 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCC-CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH---
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCC-cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH---
Confidence 5899999999999999999999874 678889999999998899999999999999997653322 22333333
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccc-ccccEEEEEeCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ-IWKRALIVLTHAQL 166 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~-~~~~~ivV~tk~D~ 166 (243)
.+|+|++|++... . ..+.+.+..-...++.. ..+|.++++||+|.
T Consensus 149 ---~ad~il~vvD~~~--p-~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 149 ---TCNLLFIILDVNK--P-LHHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp ---HCSEEEEEEETTS--H-HHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred ---hcCccccccccCc--c-HHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 7899999966642 1 12333333333334422 23688999999986
No 134
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.56 E-value=6.2e-15 Score=117.40 Aligned_cols=117 Identities=16% Similarity=0.093 Sum_probs=74.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
...+||+++|.+|+|||||+|.+++.... ....++...........++ ..+.+|||||......... .+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~ 96 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP-------LS 96 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGG-------GG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHH-------hh
Confidence 36799999999999999999999987632 2211222112222233333 5799999999854322211 11
Q ss_pred HhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..++|++++|++++... +......|+..+.+... ..|+++|+||+|+.
T Consensus 97 --~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 97 --YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR 145 (205)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGG
T ss_pred --ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhc
Confidence 15899999998886532 22222456666655432 36999999999986
No 135
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.56 E-value=8.8e-15 Score=136.23 Aligned_cols=121 Identities=18% Similarity=0.210 Sum_probs=77.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEE-------Eee--------------------eCC----
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV-------SRS--------------------RAG---- 86 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~-------~~~--------------------~~~---- 86 (243)
..++|+++|.+|+|||||+|+|+|..+..++..|++...+... ... ..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 6899999999999999999999999876666655442111100 000 000
Q ss_pred --------------------------eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHH
Q 026113 87 --------------------------FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQ 140 (243)
Q Consensus 87 --------------------------~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~ 140 (243)
..+.+|||||+.+...... .+..++ ..+|++|+|++.+. ..+..+..
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~----~~~~~i--~~aD~vL~Vvda~~-~~s~~e~~ 220 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNE----LSLGYV--NNCHAILFVMRASQ-PCTLGERR 220 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHH----HHTHHH--HSSSEEEEEEETTS-TTCHHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHH----HHHHHH--HhCCEEEEEEeCCC-ccchhHHH
Confidence 3699999999865332222 222333 38999999987754 24555554
Q ss_pred HHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 141 ITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 141 ~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
.+.. .... ...|+++|+||+|+...
T Consensus 221 ~l~~---~l~~-~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 221 YLEN---YIKG-RGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHH---HTTT-SCCCEEEEEECGGGGGG
T ss_pred HHHH---HHHh-hCCCEEEEEECcccccc
Confidence 4322 1211 13589999999998633
No 136
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.56 E-value=4.3e-14 Score=120.61 Aligned_cols=116 Identities=12% Similarity=0.063 Sum_probs=72.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
++++|+++|.+|+|||||+|+|++.... ...+ |...........+..+.+|||||......... ..+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~--~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~---~~~------ 230 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWR---HYF------ 230 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCE--EEEE--ETTEEEEEEEETTEEEEEEECC-----CCSHH---HHH------
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCC--Cccc--ccceEEEEEecCcEEEEEEECCCCHhHHHHHH---HHh------
Confidence 4579999999999999999999988742 2222 33344455667888999999999754433221 122
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+|++|+|++++..........++..+..... ....|+++|+||+|+.
T Consensus 231 ~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~ 279 (329)
T 3o47_A 231 QNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLP 279 (329)
T ss_dssp TTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred ccCCEEEEEEECCchHHHHHHHHHHHHHHhhhc-cCCCeEEEEEECccCC
Confidence 489999999888643221222222222222111 1236899999999986
No 137
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.56 E-value=5.7e-14 Score=109.50 Aligned_cols=121 Identities=17% Similarity=0.187 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH----HHHHHHHHHH
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY----HAIQLIKRFL 115 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~----~~~~~~~~~~ 115 (243)
++|+++|.+|+|||||+|++++... .....++.+....... .. .+.+|||||+.+....+. ........++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIEIE--WK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSCEEEE--ET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCccceeEEEe--cC--CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999998873 4444455554443332 22 689999999865443332 1222222333
Q ss_pred h--cCCCcEEEEEEeCCCcccChhHHHHHHH--------HHHHhcccccccEEEEEeCCCCCC
Q 026113 116 L--NKTIDVLLYVDRLDVYRVDNLDKQITRA--------ITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 116 ~--~~~~~~il~v~~~d~~~~~~~~~~~l~~--------l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
. ...++++++|.+.+ .+......|... +..... ....|+++|+||+|+..
T Consensus 77 ~~~~~~~~~v~~v~d~~--s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 136 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGK--AAPEIIKRWEKRGEIPIDVEFYQFLR-ELDIPTIVAVNKLDKIK 136 (190)
T ss_dssp HHHGGGCCEEEEEEETT--HHHHHHHHHHHTTCCCHHHHHHHHHH-HTTCCEEEEEECGGGCS
T ss_pred HhhhccCCEEEEEEcch--hhhhHHHhhhccCccHHHHHHHHHHH-hcCCceEEEeehHhccC
Confidence 2 34677888885543 222221222211 111111 12369999999999863
No 138
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.54 E-value=1.2e-13 Score=115.76 Aligned_cols=124 Identities=21% Similarity=0.311 Sum_probs=71.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccc-----ccCCCC----------------------CCCe--------------
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT-----VSTFQS----------------------EGPR-------------- 76 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~-----~~~~~~----------------------~t~~-------------- 76 (243)
..++|+++|.+|+|||||+|+|+|..... +...|. ++..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 56799999999999999999999987532 111121 1100
Q ss_pred ---------eEEEEeee-CCeEEEEEeCCCCCCCCC---Cc---HHHHHHHHHHHhcCCCcEE-EEEEeCCCcccChhHH
Q 026113 77 ---------PVMVSRSR-AGFTLNIVDTPGLIEGGY---VN---YHAIQLIKRFLLNKTIDVL-LYVDRLDVYRVDNLDK 139 (243)
Q Consensus 77 ---------~~~~~~~~-~~~~~~viDTPG~~~~~~---~~---~~~~~~~~~~~~~~~~~~i-l~v~~~d~~~~~~~~~ 139 (243)
........ .+..+.+|||||+.+... .. ......+..++ ..++.+ |+|++.+. .+...+.
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~il~v~d~~~-~~~~~~~ 181 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFV--TKENCLILAVSPANS-DLANSDA 181 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHH--TSTTEEEEEEEESSS-CGGGCHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHH--cCCCeEEEEEecCCc-chhhhHH
Confidence 00000011 136899999999975321 11 12333344444 355544 47866653 2333332
Q ss_pred -HHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 140 -QITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 140 -~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
.+++.+.. ...|+++|+||+|+.+.
T Consensus 182 ~~~~~~~~~-----~~~~~i~V~NK~Dl~~~ 207 (299)
T 2aka_B 182 LKIAKEVDP-----QGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHHHHCT-----TCSSEEEEEECGGGSCT
T ss_pred HHHHHHhCC-----CCCeEEEEEEccccCCC
Confidence 33333321 23699999999999744
No 139
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.53 E-value=1.6e-13 Score=118.58 Aligned_cols=124 Identities=21% Similarity=0.169 Sum_probs=73.7
Q ss_pred ceE-EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-h
Q 026113 39 TLT-ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-L 116 (243)
Q Consensus 39 ~~~-IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~-~ 116 (243)
.++ |+++|.+|+|||||+|.|+|... .+.+.+.+|.++......++|..+.++||||+.... .....+.++..+ .
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~l--p~~lve~f~~tl~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGI--PPQIVDAFFVTLSE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSC--CGGGHHHHHHHHHG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcC--CHHHHHHHHHHHHH
Confidence 455 99999999999999999999874 455556667666667777888999999999985421 111111122211 1
Q ss_pred cCCCcEEEEEEeCCCcc--cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYR--VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~--~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
...+|++++|+++.... .......+.+.+.. ++.. ..|+++|+||+|+.
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~~-~~p~ilV~NK~Dl~ 305 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILRE-IGVS-GKPILVTLNKIDKI 305 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTCC-SCCEEEEEECGGGC
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCcC-CCCEEEEEECCCCC
Confidence 25889999997765321 11111222333333 3311 26899999999986
No 140
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.53 E-value=1.1e-14 Score=113.65 Aligned_cols=117 Identities=18% Similarity=0.160 Sum_probs=66.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccC-CCCCCCeeEEEEeee-----CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVST-FQSEGPRPVMVSRSR-----AGFTLNIVDTPGLIEGGYVNYHAIQLIK 112 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~-~~~~t~~~~~~~~~~-----~~~~~~viDTPG~~~~~~~~~~~~~~~~ 112 (243)
.+||+++|.+|+|||||+|.+++........ .++.+.......... ....+.+|||||+....... .
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~ 74 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTH-------P 74 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTS-------H
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhh-------H
Confidence 5799999999999999999999863222222 222222222222111 35589999999974322111 1
Q ss_pred HHHhcCCCcEEEEEEeCCCc-ccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 113 RFLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 113 ~~~~~~~~~~il~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++ .+++++++|++++.. ...+....|+..+..... ..|+++|+||+|+.
T Consensus 75 ~~~--~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 125 (184)
T 2zej_A 75 HFM--TQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS---SSPVILVGTHLDVS 125 (184)
T ss_dssp HHH--HHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT---TCEEEEEEECGGGC
T ss_pred HHc--cCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC---CCcEEEEEECCCcc
Confidence 122 268999999887542 111223445555544321 36999999999985
No 141
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.53 E-value=3.7e-14 Score=111.04 Aligned_cols=120 Identities=13% Similarity=0.091 Sum_probs=69.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC---CCCCeeEEE-E-----e-ee--CCeEEEEEeCCCCCCCCCCcH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ---SEGPRPVMV-S-----R-SR--AGFTLNIVDTPGLIEGGYVNY 105 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~---~~t~~~~~~-~-----~-~~--~~~~~~viDTPG~~~~~~~~~ 105 (243)
..+||+++|.+|+|||||++.+.+.......... .....++.. . . .. ....+.+|||||..+.. .
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~ 89 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---A 89 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS---H
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH---H
Confidence 5699999999999999999988876432211100 000011111 0 0 11 23479999999986432 2
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHH----HHHHHHhcccccccEEEEEeCCCCC
Q 026113 106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQIT----RAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 106 ~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l----~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.. ..++ .++|++++|++++... .......+ .++..........|+++|+||+|+.
T Consensus 90 ~~----~~~~--~~~d~~i~v~D~~~~~-~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 90 SR----KLIL--RGVDGIVFVADSAPNR-LRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp HH----HHHT--TTCCEEEEEEECCGGG-HHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred HH----HHHH--hcCCEEEEEEECCcch-hhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence 11 1222 5899999998886322 11222222 2333321112347999999999985
No 142
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.53 E-value=1.9e-14 Score=123.26 Aligned_cols=120 Identities=17% Similarity=0.206 Sum_probs=81.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCCC----CCcHHHHHHHHHHH
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGG----YVNYHAIQLIKRFL 115 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~viDTPG~~~~~----~~~~~~~~~~~~~~ 115 (243)
+|+++|.+|||||||+|+|++... .+..++.+|..+......+.+ ..+.+|||||+.+.. .....+++.+.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~--- 235 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE--- 235 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH---
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHH---
Confidence 688999999999999999998764 345666667666666666665 789999999975321 12233333332
Q ss_pred hcCCCcEEEEEEeCCC---cccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 116 LNKTIDVLLYVDRLDV---YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~---~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++++|+|+++.. ....+....++..+......-..+|+++|+||+|+.
T Consensus 236 ---~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~ 287 (342)
T 1lnz_A 236 ---RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP 287 (342)
T ss_dssp ---HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred ---hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence 6899999988754 222223344555555532212347999999999985
No 143
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.52 E-value=1.1e-13 Score=124.02 Aligned_cols=120 Identities=14% Similarity=0.143 Sum_probs=75.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCccc------------------------------ccCCCCCCCeeEEEEeeeC
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVT------------------------------VSTFQSEGPRPVMVSRSRA 85 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~------------------------------~~~~~~~t~~~~~~~~~~~ 85 (243)
.+..++|+++|.+|+|||||+|+|++..... .....+.|...........
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 3468999999999999999999998651100 0111233444444555667
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcc------cChhHHHHHHHHHHHhcccccccEEE
Q 026113 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALI 159 (243)
Q Consensus 86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~------~~~~~~~~l~~l~~~~~~~~~~~~iv 159 (243)
+..+.+|||||+.+. ...+..++ ..+|++|+|++++... ........+.. ....+. .|+++
T Consensus 110 ~~~~~iiDTPG~~~f-------~~~~~~~~--~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~-~~~~~~---~~iIv 176 (483)
T 3p26_A 110 RANFTIVDAPGHRDF-------VPNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLL-ASSLGI---HNLII 176 (483)
T ss_dssp SCEEEEECCCCCGGG-------HHHHHHHH--TTCSEEEEEEECCC------CCCCHHHHHHHHH-HHHTTC---CCEEE
T ss_pred CceEEEEECCCcHHH-------HHHHHHhh--hhCCEEEEEEECCCCccccccchhhhHHHHHHH-HHHcCC---CcEEE
Confidence 889999999999432 22233333 4899999998876421 11222222222 222332 57999
Q ss_pred EEeCCCCCC
Q 026113 160 VLTHAQLSL 168 (243)
Q Consensus 160 V~tk~D~~~ 168 (243)
|+||+|+.+
T Consensus 177 viNK~Dl~~ 185 (483)
T 3p26_A 177 AMNKMDNVD 185 (483)
T ss_dssp EEECGGGGT
T ss_pred EEECcCccc
Confidence 999999863
No 144
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.51 E-value=2e-13 Score=117.84 Aligned_cols=125 Identities=19% Similarity=0.232 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeE-----------------------------------------
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV----------------------------------------- 78 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~----------------------------------------- 78 (243)
.+|+++|.+|+|||||+|+|+|....+.+.. ..|..+.
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~-~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSS-SCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCC-cccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 4999999999999999999999764332211 1111100
Q ss_pred -------------EEEe-eeCCeEEEEEeCCCCCCCCC------CcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhH
Q 026113 79 -------------MVSR-SRAGFTLNIVDTPGLIEGGY------VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD 138 (243)
Q Consensus 79 -------------~~~~-~~~~~~~~viDTPG~~~~~~------~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~ 138 (243)
.... ......+.+|||||+.+... ...........++ .++|++++|++....... .
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i--~~~d~iilvv~~~~~~~~--~ 189 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYI--EKPNCIILAISPANQDLA--T 189 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHH--HSSSEEEEEEEETTSCGG--G
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHh--hcCCeEEEEeecccCCcC--C
Confidence 0010 11244699999999987522 1122333344444 489988888544222211 1
Q ss_pred HHHHHHHHHHhcccccccEEEEEeCCCCCCCCC
Q 026113 139 KQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (243)
Q Consensus 139 ~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~ 171 (243)
..++..+...... ..|+++|+||+|+.+++.
T Consensus 190 ~~~~~l~~~~~~~--~~~~i~V~nK~Dl~~~~~ 220 (360)
T 3t34_A 190 SDAIKISREVDPS--GDRTFGVLTKIDLMDKGT 220 (360)
T ss_dssp CHHHHHHHHSCTT--CTTEEEEEECGGGCCTTC
T ss_pred HHHHHHHHHhccc--CCCEEEEEeCCccCCCcc
Confidence 2334444433222 369999999999975443
No 145
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.51 E-value=6.1e-14 Score=118.99 Aligned_cols=118 Identities=17% Similarity=0.121 Sum_probs=77.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHHHHHHHH
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHAIQLIKR 113 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~viDTPG~~~~~~~~~~~~~~~~~ 113 (243)
....++|+++|.+|+|||||+|.+++... .....+++..........++.. +.+|||||..+...... .
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~ 222 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP-------L 222 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGG-------G
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHH-------H
Confidence 34679999999999999999999997753 2223333333333344556654 55999999854432211 1
Q ss_pred HHhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 114 FLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 114 ~~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+ ...+|++++|++++... +......++..+....+ ..|+++|+||+|+.
T Consensus 223 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 223 S--YPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLR 272 (332)
T ss_dssp G--CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHH
T ss_pred h--ccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcc
Confidence 1 15899999998886532 22222245566665433 37999999999985
No 146
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.50 E-value=1.6e-13 Score=123.21 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=78.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
.+.++|+++|.+|+|||||+|+|++... +...+ |.........+.+..+.+|||||..+..... ..++
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~--~~~~~--T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~- 387 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQS--VTTIP--TVGFNVETVTYKNVKFNVWDVGGQDKIRPLW-------RHYY- 387 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSC--CCCCC--CSSEEEEEEESSSCEEEEEEECCCGGGSGGG-------GGGG-
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCC--CCcCC--ccceeEEEEEeCCEEEEEEECCCcHHHHHHH-------HHHh-
Confidence 3569999999999999999999998873 23333 4445555566788899999999975433221 1122
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.++|++|+|+++...........++..+.+... ....|+++|+||+|+.
T Consensus 388 -~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~ 436 (497)
T 3lvq_E 388 -TGTQGLIFVVDCADRDRIDEARQELHRIINDRE-MRDAIILIFANKQDLP 436 (497)
T ss_dssp -TTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGG-GTTCEEEEEEECCSSS
T ss_pred -ccCCEEEEEEECcchhHHHHHHHHHHHHhhhhh-cCCCcEEEEEECCCCC
Confidence 589999999887643212222333333322211 1236999999999985
No 147
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.49 E-value=6.2e-13 Score=104.96 Aligned_cols=125 Identities=14% Similarity=0.077 Sum_probs=78.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++|+++|++|+|||||+|.++|..... ...+..+.........++|. .+.+|||||.......... .+
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~---~~---- 75 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSA---YY---- 75 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHH---HH----
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHH---HH----
Confidence 35899999999999999999999876322 22233333444445566775 5778999997544322211 11
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCH
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~ 174 (243)
..++++++|+++......+....++..+..... ...|+++|+||+|+.+......
T Consensus 76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~~~~~~ 130 (199)
T 2f9l_A 76 --RGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPT 130 (199)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCH
T ss_pred --hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccccCcCH
Confidence 478999999887543211222344544444322 2368999999999864444443
No 148
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.49 E-value=1.2e-13 Score=125.25 Aligned_cols=123 Identities=15% Similarity=0.267 Sum_probs=76.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcc--cccCCCCCCCeeEEEEe---------------------------------
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAV--TVSTFQSEGPRPVMVSR--------------------------------- 82 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~--~~~~~~~~t~~~~~~~~--------------------------------- 82 (243)
...+|+++|.+|+|||||+|+|+|.... .++..+.++........
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4579999999999999999999998854 24444443321111100
Q ss_pred ---eeCC---eEEEEEeCCCCCCCCCC--cH--HHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccc
Q 026113 83 ---SRAG---FTLNIVDTPGLIEGGYV--NY--HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ 152 (243)
Q Consensus 83 ---~~~~---~~~~viDTPG~~~~~~~--~~--~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~ 152 (243)
.+.+ ..+.+|||||+.+.... .. ........++ ..+|++|+|++++.....+.+..+++.+...
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---- 217 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFA--ERVDLIILLFDAHKLEISDEFSEAIGALRGH---- 217 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHH--HHCSEEEEEEETTSCCCCHHHHHHHHHTTTC----
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHH--HhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc----
Confidence 0000 36899999999763221 10 0112223333 3789999998876533556666666555432
Q ss_pred ccccEEEEEeCCCCC
Q 026113 153 IWKRALIVLTHAQLS 167 (243)
Q Consensus 153 ~~~~~ivV~tk~D~~ 167 (243)
..|+++|+||+|+.
T Consensus 218 -~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 218 -EDKIRVVLNKADMV 231 (550)
T ss_dssp -GGGEEEEEECGGGS
T ss_pred -CCCEEEEEECCCcc
Confidence 26899999999986
No 149
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.49 E-value=3.3e-13 Score=116.20 Aligned_cols=126 Identities=19% Similarity=0.249 Sum_probs=72.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccc-----cCCCC----------------------CCCe--------------
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTV-----STFQS----------------------EGPR-------------- 76 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~-----~~~~~----------------------~t~~-------------- 76 (243)
...+|+++|.+|+|||||+|+|+|...... ...|. ++..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999875321 11121 0000
Q ss_pred ---------eEEEEee-eCCeEEEEEeCCCCCCCCC---Cc---HHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHH
Q 026113 77 ---------PVMVSRS-RAGFTLNIVDTPGLIEGGY---VN---YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQ 140 (243)
Q Consensus 77 ---------~~~~~~~-~~~~~~~viDTPG~~~~~~---~~---~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~ 140 (243)
....... .++.++.+|||||+..... .. +.+...+..++. ...++||+|++.+. .+...+.
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiL~v~~a~~-~~~~~~~- 186 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSDA- 186 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHT-STTEEEEEEEETTS-CGGGCHH-
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHc-CCCeEEEEEecCCC-ccchhHH-
Confidence 0000011 1246799999999975321 11 123333444443 45567777766543 2333332
Q ss_pred HHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 141 ITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 141 ~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
++.+...... ..|+++|+||+|+.+.
T Consensus 187 -~~i~~~~~~~--~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 187 -LKVAKEVDPQ--GQRTIGVITKLDLMDE 212 (353)
T ss_dssp -HHHHHHHCTT--CTTEEEEEECGGGSCT
T ss_pred -HHHHHHhCcC--CCceEEEeccccccCc
Confidence 2233332222 3699999999999643
No 150
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.48 E-value=3.7e-13 Score=116.23 Aligned_cols=124 Identities=21% Similarity=0.249 Sum_probs=63.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC------CCCCee--EEEEeeeCCe--EEEEEeCCCCCCCCCC----
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ------SEGPRP--VMVSRSRAGF--TLNIVDTPGLIEGGYV---- 103 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~------~~t~~~--~~~~~~~~~~--~~~viDTPG~~~~~~~---- 103 (243)
..++|+++|.+|+|||||+|+|++...+.....+ ..|... ........+. .+.+|||||+++....
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 5799999999999999999999987654332211 112111 1112223443 7899999999654321
Q ss_pred ---cHHHHHHHHHHHh-----------cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 104 ---NYHAIQLIKRFLL-----------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 104 ---~~~~~~~~~~~~~-----------~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
...+...+..++. ...+|+++|++......+.+.+..+++.+ .. ..|+|+|+||+|+.
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~--~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HN--KVNIVPVIAKADTL 187 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS---SCEEEEEECCSSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----cc--CCCEEEEEECCCCC
Confidence 1111111112221 23457888885432334666665555444 22 36999999999986
No 151
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.22 E-value=2.7e-15 Score=118.98 Aligned_cols=118 Identities=17% Similarity=0.131 Sum_probs=74.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~~~~~~~~~~~ 114 (243)
.+.++|+++|.+|+|||||+|++++.... ....+++..........++ ..+.+|||||..+..... ..+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~ 98 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR-------PLS 98 (204)
Confidence 36799999999999999999999976532 2222222222222223333 457799999985432211 111
Q ss_pred HhcCCCcEEEEEEeCCCcc-cChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
+ .++|++++|++++... +......++..+....+ ..|+++|+||+|+.+
T Consensus 99 ~--~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 99 Y--PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 148 (204)
Confidence 2 4789999997775432 33323356666655433 369999999999863
No 152
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.48 E-value=1.1e-12 Score=118.86 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=77.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEE------Eee----eCCeEEEEEeCCCCCCCCCCcHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV------SRS----RAGFTLNIVDTPGLIEGGYVNYH 106 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~------~~~----~~~~~~~viDTPG~~~~~~~~~~ 106 (243)
...+||+++|.+|+|||||+|++++.... ....++.+...... ... ..+..+.+|||||..........
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~-~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD-PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 46799999999999999999999988632 11112222221111 111 12578999999997655544332
Q ss_pred HHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 107 AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 107 ~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
.++ ++|++++|+++. .. +....++..+....+ ..|+++|+||+|+.+......+
T Consensus 118 ---~l~------~~d~ii~V~D~s--~~-~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~~~v~~~ 171 (535)
T 3dpu_A 118 ---FMT------RSSVYMLLLDSR--TD-SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPSYNIEQK 171 (535)
T ss_dssp ---HHH------SSEEEEEEECGG--GG-GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTTCCCCHH
T ss_pred ---Hcc------CCcEEEEEEeCC--Cc-hhHHHHHHHHHHhCC---CCCEEEEEECCCcccccccCHH
Confidence 232 799999996654 33 455667777776543 3699999999999754444433
No 153
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.47 E-value=4.6e-13 Score=113.33 Aligned_cols=117 Identities=16% Similarity=0.145 Sum_probs=69.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccc--CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVS--TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~ 118 (243)
||+++|.+|+||||+++.+.+....... ..++....... . ....++.+|||||+.+.....-....++ +
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v-~~~v~LqIWDTAGQErf~~~~l~~~~yy------r 71 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F-STLIDLAVMELPGQLNYFEPSYDSERLF------K 71 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E-CSSSCEEEEECCSCSSSCCCSHHHHHHH------T
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E-ccEEEEEEEECCCchhccchhhhhhhhc------c
Confidence 6899999999999999988765321111 11211222111 1 1246899999999986632110111122 5
Q ss_pred CCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 119 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+++++++|+++... +.+....+.+++..........|+++|+||+|+.
T Consensus 72 ~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~ 119 (331)
T 3r7w_B 72 SVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGL 119 (331)
T ss_dssp TCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSS
T ss_pred CCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccC
Confidence 99999999777543 3333333333333221111236999999999996
No 154
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.45 E-value=1.1e-12 Score=116.13 Aligned_cols=118 Identities=11% Similarity=0.084 Sum_probs=73.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccccc------------------------------CCCCCCCeeEEEEeeeCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS------------------------------TFQSEGPRPVMVSRSRAG 86 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~ 86 (243)
+..++|+++|.+++|||||+|+|++....... ..++.|.+.........+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 46799999999999999999999765211110 012234444444556778
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccC------hhHHHHHHHHHHHhcccccccEEEE
Q 026113 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD------NLDKQITRAITDNFGEQIWKRALIV 160 (243)
Q Consensus 87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~------~~~~~~l~~l~~~~~~~~~~~~ivV 160 (243)
..+.+|||||+.+ ....+...+ ..+|++|+|++++..-+. ......+..+.. .+. .++++|
T Consensus 95 ~~~~iiDTPGh~~-------f~~~~~~~~--~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v---~~iIvv 161 (439)
T 3j2k_7 95 KHFTILDAPGHKS-------FVPNMIGGA--SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGV---KHLIVL 161 (439)
T ss_pred eEEEEEECCChHH-------HHHHHHhhH--hhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCC---CeEEEE
Confidence 8999999999842 222333333 379999999777542110 122333322222 221 349999
Q ss_pred EeCCCCC
Q 026113 161 LTHAQLS 167 (243)
Q Consensus 161 ~tk~D~~ 167 (243)
+||+|+.
T Consensus 162 iNK~Dl~ 168 (439)
T 3j2k_7 162 INKMDDP 168 (439)
T ss_pred eecCCCc
Confidence 9999985
No 155
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.45 E-value=1.9e-13 Score=119.38 Aligned_cols=88 Identities=23% Similarity=0.239 Sum_probs=45.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEee---------------------eC---CeEEEEEeCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS---------------------RA---GFTLNIVDTP 95 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~---------------------~~---~~~~~viDTP 95 (243)
++|+++|.+|+|||||+|+|++.. +.++.+|.+|..+...... +. ..++.+||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 589999999999999999999987 5666777666655443211 12 2579999999
Q ss_pred CCCCCCCCcHHHHHHHHHHH-hcCCCcEEEEEEeCCC
Q 026113 96 GLIEGGYVNYHAIQLIKRFL-LNKTIDVLLYVDRLDV 131 (243)
Q Consensus 96 G~~~~~~~~~~~~~~~~~~~-~~~~~~~il~v~~~d~ 131 (243)
|+.+.....+. ....++ ....+|++++|++...
T Consensus 80 G~~~~a~~~~~---l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 80 GLVPGAHEGRG---LGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp ------------------CCCSSTTCSEEEEEEETTC
T ss_pred Ccccchhhhhh---HHHHHHHHHhcCCEEEEEEeccc
Confidence 99653221111 111222 1258999999988754
No 156
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.44 E-value=1.9e-12 Score=120.58 Aligned_cols=125 Identities=21% Similarity=0.298 Sum_probs=78.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeE---------------------------------------
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV--------------------------------------- 78 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~--------------------------------------- 78 (243)
.-.+|+++|.+++|||||+|+|+|....+.+... +|..+.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~-~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC-SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc-ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 4579999999999999999999998753333221 121111
Q ss_pred ------------EEEeee-CCeEEEEEeCCCCCCCCC---Cc---HHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHH
Q 026113 79 ------------MVSRSR-AGFTLNIVDTPGLIEGGY---VN---YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDK 139 (243)
Q Consensus 79 ------------~~~~~~-~~~~~~viDTPG~~~~~~---~~---~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~ 139 (243)
...... +..++.+|||||+..... .. ....+.+..++. ..+|++|+|++... .....+.
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~-~~~~~d~ 206 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSDA 206 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTS-CSSSCHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCC-CcchhHH
Confidence 111111 233689999999986321 11 234444455554 68899999977653 2344443
Q ss_pred -HHHHHHHHHhcccccccEEEEEeCCCCCCCC
Q 026113 140 -QITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (243)
Q Consensus 140 -~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~ 170 (243)
.+++.+... ..|+++|+||+|+.++.
T Consensus 207 l~ll~~L~~~-----g~pvIlVlNKiDlv~~~ 233 (772)
T 3zvr_A 207 LKIAKEVDPQ-----GQRTIGVITKLDLMDEG 233 (772)
T ss_dssp HHHHHHHCTT-----CSSEEEEEECTTSSCTT
T ss_pred HHHHHHHHhc-----CCCEEEEEeCcccCCcc
Confidence 444444321 36999999999997443
No 157
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.44 E-value=2.6e-12 Score=100.87 Aligned_cols=122 Identities=16% Similarity=0.110 Sum_probs=76.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~viDTPG~~~~~~~~~~~~~~~~~~~ 115 (243)
..++|+++|.+|||||||+|.+++.... ....++.+.........++|.. +.+|||||+......... .+
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~-~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~---~~---- 99 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSA---YY---- 99 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHH---HH----
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHH---Hh----
Confidence 4589999999999999999999987642 2222333333344555667764 557999998654333221 12
Q ss_pred hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCC
Q 026113 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (243)
Q Consensus 116 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~ 171 (243)
..++++++|+++......+....++..+.+... ...++++|+||+|+.+...
T Consensus 100 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~~~ 151 (191)
T 1oix_A 100 --RGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRA 151 (191)
T ss_dssp --TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCC
T ss_pred --hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccc
Confidence 478899999776532211222334444443322 2368999999999864333
No 158
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.42 E-value=3.1e-13 Score=124.04 Aligned_cols=119 Identities=14% Similarity=0.138 Sum_probs=74.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccC------------------------------CCCCCCeeEEEEeeeCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST------------------------------FQSEGPRPVMVSRSRAG 86 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~ 86 (243)
+..++|+++|.+|+|||||+|+|++........ .++.|...........+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 467999999999999999999999764221110 12334444444555678
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcc------cChhHHHHHHHHHHHhcccccccEEEE
Q 026113 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALIV 160 (243)
Q Consensus 87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~------~~~~~~~~l~~l~~~~~~~~~~~~ivV 160 (243)
..+.||||||+.+ ....+..+ ...+|++|+|++++... ........+..+ ...+. .++|+|
T Consensus 245 ~~~~iiDTPG~e~-------f~~~~~~~--~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~lgi---~~iIVV 311 (611)
T 3izq_1 245 ANFTIVDAPGHRD-------FVPNAIMG--ISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSLGI---HNLIIA 311 (611)
T ss_dssp CEEEEEECCSSSC-------HHHHHTTT--SSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HTTTC---CEEEEE
T ss_pred ceEEEEECCCCcc-------cHHHHHHH--HhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HHcCC---CeEEEE
Confidence 8999999999843 11222222 25899999997775310 112222222222 22231 469999
Q ss_pred EeCCCCCC
Q 026113 161 LTHAQLSL 168 (243)
Q Consensus 161 ~tk~D~~~ 168 (243)
+||+|+.+
T Consensus 312 vNKiDl~~ 319 (611)
T 3izq_1 312 MNKMDNVD 319 (611)
T ss_dssp EECTTTTT
T ss_pred Eecccccc
Confidence 99999863
No 159
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.42 E-value=1.9e-12 Score=114.36 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=72.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccccc----------CCC----------------------CCCCeeEEEEeeeC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVS----------TFQ----------------------SEGPRPVMVSRSRA 85 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~----------~~~----------------------~~t~~~~~~~~~~~ 85 (243)
..++|+++|..++|||||+|+|++....... ..+ +.|...........
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 5699999999999999999999865311100 001 11222223334456
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (243)
Q Consensus 86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 165 (243)
+..+.+|||||+.+. .. .+..++ ..+|++|+|++++.. ........+..+.. .+. +|+++|+||+|
T Consensus 103 ~~~~~iiDtpGh~~f---~~----~~~~~~--~~aD~~ilVvDa~~g-~~~qt~~~l~~~~~-~~~---~~iIvviNK~D 168 (434)
T 1zun_B 103 KRKFIIADTPGHEQY---TR----NMATGA--STCDLAIILVDARYG-VQTQTRRHSYIASL-LGI---KHIVVAINKMD 168 (434)
T ss_dssp SEEEEEEECCCSGGG---HH----HHHHHH--TTCSEEEEEEETTTC-SCHHHHHHHHHHHH-TTC---CEEEEEEECTT
T ss_pred CceEEEEECCChHHH---HH----HHHHHH--hhCCEEEEEEECCCC-CcHHHHHHHHHHHH-cCC---CeEEEEEEcCc
Confidence 788999999998432 12 222333 589999999887642 33444444444333 231 46999999999
Q ss_pred CC
Q 026113 166 LS 167 (243)
Q Consensus 166 ~~ 167 (243)
+.
T Consensus 169 l~ 170 (434)
T 1zun_B 169 LN 170 (434)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 160
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.38 E-value=2.4e-12 Score=116.20 Aligned_cols=115 Identities=10% Similarity=0.126 Sum_probs=75.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccc---------------c------cCCCCCCCeeEEEEeeeCCeEEEEEeCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT---------------V------STFQSEGPRPVMVSRSRAGFTLNIVDTPG 96 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~---------------~------~~~~~~t~~~~~~~~~~~~~~~~viDTPG 96 (243)
+..+|+++|.+|+|||||+|+|++..... . ....+.|.........+.+..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 46899999999999999999997221100 0 00122344444556678899999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+.+.. .+..+.+ ..+|++|+|++... .........+..+... ..|+++|+||+|+.
T Consensus 92 ~~df~---~~~~~~l------~~aD~allVvDa~~-g~~~~t~~~~~~~~~~-----~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 92 HADFT---EDTYRTL------TAVDSALMVIDAAK-GVEPRTIKLMEVCRLR-----HTPIMTFINKMDRD 147 (528)
T ss_dssp STTCC---HHHHHGG------GGCSEEEEEEETTT-CSCHHHHHHHHHHHTT-----TCCEEEEEECTTSC
T ss_pred chhHH---HHHHHHH------HhCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCc
Confidence 96543 2333233 38999999977754 2334444444333321 36999999999984
No 161
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.38 E-value=2.5e-12 Score=112.63 Aligned_cols=116 Identities=12% Similarity=0.054 Sum_probs=75.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCC-------ccc---ccC------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEK-------AVT---VST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~-------~~~---~~~------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~ 100 (243)
...++|+++|.+++|||||+|+|++.. .+. ..+ ..+.|...........+..+.+|||||+.+.
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 467999999999999999999999731 000 000 1223333334445556789999999998532
Q ss_pred CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc-EEEEEeCCCCC
Q 026113 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS 167 (243)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~ 167 (243)
...+..++ ..+|++|+|++++. ........++..+... + .| +++|+||+|+.
T Consensus 89 -------~~~~~~~~--~~aD~~ilVvda~~-g~~~qt~~~l~~~~~~-~----ip~iivviNK~Dl~ 141 (405)
T 2c78_A 89 -------IKNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-G----VPYIVVFMNKVDMV 141 (405)
T ss_dssp -------HHHHHHHH--TTCSSEEEEEETTT-CCCHHHHHHHHHHHHT-T----CCCEEEEEECGGGC
T ss_pred -------HHHHHHHH--HHCCEEEEEEECCC-CCcHHHHHHHHHHHHc-C----CCEEEEEEECcccc
Confidence 22233333 48999999988754 2334445555444432 2 46 89999999985
No 162
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.38 E-value=2.1e-12 Score=113.12 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=71.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCC---------CeeEE----------EEeeeCCeEEEEEeCCCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG---------PRPVM----------VSRSRAGFTLNIVDTPGL 97 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t---------~~~~~----------~~~~~~~~~~~viDTPG~ 97 (243)
...++|+++|.+|+|||||+|+|++........+...+ ..... .........+.+|||||.
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 46799999999999999999999985321110000000 00000 000112268999999997
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 98 IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.+ ....+..++ ..+|++++|++++..........++..+... +. +|+++|+||+|+.
T Consensus 86 ~~-------~~~~~~~~~--~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~ 142 (403)
T 3sjy_A 86 EV-------LMATMLSGA--ALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVV 142 (403)
T ss_dssp GG-------GHHHHHHHH--TTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGS
T ss_pred HH-------HHHHHHHHH--hhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECcccc
Confidence 32 222233333 4899999998876532244445555444432 32 5899999999986
No 163
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.37 E-value=3.3e-12 Score=114.23 Aligned_cols=116 Identities=14% Similarity=0.167 Sum_probs=73.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcc------cccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAV------TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQL 110 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~ 110 (243)
.+.++|+++|..++|||||+|+|++.... .....++.|.........+++..+.+|||||.. +....
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~-------~~~~~ 89 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA-------DLIRA 89 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH-------HHHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH-------HHHHH
Confidence 35799999999999999999999987621 111222233332223345678899999999972 23333
Q ss_pred HHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 111 IKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 111 ~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+...+ ..+|++|+|++++. .......+.+..+.. .+ .|.++|+||+|+.
T Consensus 90 ~~~~~--~~aD~~ilVvda~~-g~~~qt~e~l~~~~~-~~----ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 90 VVSAA--DIIDLALIVVDAKE-GPKTQTGEHMLILDH-FN----IPIIVVITKSDNA 138 (482)
T ss_dssp HHHHT--TSCCEEEEEEETTT-CSCHHHHHHHHHHHH-TT----CCBCEEEECTTSS
T ss_pred HHHHH--hhCCEEEEEEecCC-CccHHHHHHHHHHHH-cC----CCEEEEEECCCcc
Confidence 33333 58999999987754 233444445544433 22 5779999999986
No 164
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.36 E-value=2e-12 Score=114.95 Aligned_cols=118 Identities=13% Similarity=0.187 Sum_probs=71.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCC-ccc-----------------------ccC------CCCCCCeeEEEEeeeCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEK-AVT-----------------------VST------FQSEGPRPVMVSRSRAG 86 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~-~~~-----------------------~~~------~~~~t~~~~~~~~~~~~ 86 (243)
...++|+++|.+++|||||+|+|++.. .+. ..+ ..+.|...........+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 356999999999999999999998641 000 000 12233333334455677
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccC------hhHHHHHHHHHHHhcccccccEEEE
Q 026113 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD------NLDKQITRAITDNFGEQIWKRALIV 160 (243)
Q Consensus 87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~------~~~~~~l~~l~~~~~~~~~~~~ivV 160 (243)
..+.+|||||+.+ +...+..++ ..+|++|+|++++...+. ......+..+ ...+ . .++++|
T Consensus 85 ~~~~iiDtPGh~~-------f~~~~~~~~--~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~~~--v-~~iivv 151 (458)
T 1f60_A 85 YQVTVIDAPGHRD-------FIKNMITGT--SQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FTLG--V-RQLIVA 151 (458)
T ss_dssp EEEEEEECCCCTT-------HHHHHHHSS--SCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HHTT--C-CEEEEE
T ss_pred ceEEEEECCCcHH-------HHHHHHhhh--hhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HHcC--C-CeEEEE
Confidence 8999999999742 222233222 589999999777531110 0122222222 2222 1 359999
Q ss_pred EeCCCCC
Q 026113 161 LTHAQLS 167 (243)
Q Consensus 161 ~tk~D~~ 167 (243)
+||+|+.
T Consensus 152 iNK~Dl~ 158 (458)
T 1f60_A 152 VNKMDSV 158 (458)
T ss_dssp EECGGGG
T ss_pred EEccccc
Confidence 9999986
No 165
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.36 E-value=1e-11 Score=98.47 Aligned_cols=121 Identities=19% Similarity=0.207 Sum_probs=67.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKR 113 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~---~~~~~~~~~ 113 (243)
+..+|+++|.+|+|||||+|.|+|.. ...+.+.++.+.... ...+.+ .+.+|||||+....... +.+...+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEEET-TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 56899999999999999999999876 222233333332221 122233 68899999986432111 122223333
Q ss_pred HHh-cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 114 FLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 114 ~~~-~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
++. ...++++++++++... ....+.....++.. ...|+++|.||+|+.
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~-~~~~~~~~~~~~~~-----~~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHP-LKDLDQQMIEWAVD-----SNIAVLVLLTKADKL 150 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSC-CCHHHHHHHHHHHH-----TTCCEEEEEECGGGS
T ss_pred HHHhhhcccEEEEEEECCCC-CchhHHHHHHHHHH-----cCCCeEEEEecccCC
Confidence 332 2578999999877542 33333344444332 236899999999975
No 166
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.33 E-value=6.4e-12 Score=109.81 Aligned_cols=115 Identities=13% Similarity=0.071 Sum_probs=71.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccc----------ccC-----CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT----------VST-----FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~----------~~~-----~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~ 102 (243)
..++|+++|..++|||||+++|++..... ... ..+.|...........+..+.+|||||+.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~---- 77 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA---- 77 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH----
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH----
Confidence 46899999999999999999999742100 000 11112222222334567899999999984
Q ss_pred CcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc-EEEEEeCCCCC
Q 026113 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS 167 (243)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~ 167 (243)
++...+..++ ..+|++|+|++++.. ........+..+.. .+ .| +++|+||+|+.
T Consensus 78 ---~f~~~~~~~~--~~aD~~ilVvda~~g-~~~qt~e~l~~~~~-~~----vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 78 ---DYVKNMITGT--APLDGCILVVAANDG-PMPQTREHLLLARQ-IG----VEHVVVYVNKADAV 132 (397)
T ss_dssp ---HHHHHHHHTS--SCCSEEEEEEETTTC-SCHHHHHHHHHHHH-TT----CCCEEEEEECGGGC
T ss_pred ---HHHHHHHhhH--hhCCEEEEEEECCCC-CCHHHHHHHHHHHH-cC----CCeEEEEEECcccC
Confidence 2222333332 589999999887642 33334444433332 22 46 78999999985
No 167
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.33 E-value=4.4e-12 Score=112.10 Aligned_cols=119 Identities=13% Similarity=0.167 Sum_probs=69.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCC--cccc----------------------------cCCCCCCCeeEEEEeeeCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEK--AVTV----------------------------STFQSEGPRPVMVSRSRAG 86 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~--~~~~----------------------------~~~~~~t~~~~~~~~~~~~ 86 (243)
+..++|+++|..|+|||||+++|++.. +... ....+.|...........+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 357999999999999999999998641 1000 0012233333333455677
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCccc------ChhHHHHHHHHHHHhcccccccEEEE
Q 026113 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV------DNLDKQITRAITDNFGEQIWKRALIV 160 (243)
Q Consensus 87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~------~~~~~~~l~~l~~~~~~~~~~~~ivV 160 (243)
..+.+|||||+.+. ...+..++ ..+|++|+|++++...+ .....+.+... ...+. .++++|
T Consensus 84 ~~~~iiDtpG~~~f-------~~~~~~~~--~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~-~~~~~---~~iivv 150 (435)
T 1jny_A 84 YFFTIIDAPGHRDF-------VKNMITGA--SQADAAILVVSAKKGEYEAGMSVEGQTREHIILA-KTMGL---DQLIVA 150 (435)
T ss_dssp CEEEECCCSSSTTH-------HHHHHHTS--SCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHH-HHTTC---TTCEEE
T ss_pred eEEEEEECCCcHHH-------HHHHHhhh--hhcCEEEEEEECCCCccccccccchHHHHHHHHH-HHcCC---CeEEEE
Confidence 89999999998542 22233332 58999999988764211 11122222222 22221 479999
Q ss_pred EeCCCCCC
Q 026113 161 LTHAQLSL 168 (243)
Q Consensus 161 ~tk~D~~~ 168 (243)
+||+|+.+
T Consensus 151 iNK~Dl~~ 158 (435)
T 1jny_A 151 VNKMDLTE 158 (435)
T ss_dssp EECGGGSS
T ss_pred EEcccCCC
Confidence 99999863
No 168
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.32 E-value=3.5e-12 Score=111.81 Aligned_cols=124 Identities=20% Similarity=0.281 Sum_probs=65.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCC-C----CCCCeeEEEE--eeeCC--eEEEEEeCCCCCCCCCCc---H
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-Q----SEGPRPVMVS--RSRAG--FTLNIVDTPGLIEGGYVN---Y 105 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~-~----~~t~~~~~~~--~~~~~--~~~~viDTPG~~~~~~~~---~ 105 (243)
-.++|+++|++|+|||||+|.|+|......+.. . ..+....... ....+ ..+.+|||||++...... .
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 468999999999999999999999864222110 0 1111111111 11122 368999999997642111 1
Q ss_pred HHHHHH----HHHH-----------hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 106 HAIQLI----KRFL-----------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 106 ~~~~~~----~~~~-----------~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.+.+.+ ..++ ..+.+|++||++......+...+..+++.+.. ..++|+|+||+|+.
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~------~v~iIlVinK~Dll 180 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTL 180 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT------TSEEEEEEESTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc------cCcEEEEEEcccCc
Confidence 111111 1121 12456778888333222466666666665542 26999999999986
No 169
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.30 E-value=2.6e-11 Score=109.53 Aligned_cols=115 Identities=14% Similarity=0.121 Sum_probs=71.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccc---------------ccC------CCCCCCeeEEEEeeeCCeEEEEEeCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT---------------VST------FQSEGPRPVMVSRSRAGFTLNIVDTPG 96 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~---------------~~~------~~~~t~~~~~~~~~~~~~~~~viDTPG 96 (243)
+..+|+++|.+|+|||||+|+|++..... ..+ ..+.|.........+.+..+.+|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 46899999999999999999999642111 000 011122222344567888999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+.+.. .... +++ ..+|++|+|++.... ........+..+.. ...|+++|+||+|+.
T Consensus 92 ~~df~---~~~~----~~l--~~aD~~IlVvDa~~g-~~~~t~~~~~~~~~-----~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 92 HEDFS---EDTY----RTL--TAVDCCLMVIDAAKG-VEDRTRKLMEVTRL-----RDTPILTFMNKLDRD 147 (529)
T ss_dssp STTCC---HHHH----HGG--GGCSEEEEEEETTTC-SCHHHHHHHHHHTT-----TTCCEEEEEECTTSC
T ss_pred ChhHH---HHHH----HHH--HHCCEEEEEEeCCcc-chHHHHHHHHHHHH-----cCCCEEEEEcCcCCc
Confidence 96543 2222 222 489999999777542 33322322222211 136899999999985
No 170
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.30 E-value=2.4e-13 Score=122.51 Aligned_cols=115 Identities=13% Similarity=0.128 Sum_probs=76.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~ 116 (243)
++.+|+++|.+|+|||||+|+|++..... ...++.|.+........ .+..+.+|||||..+....... +
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~-~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~-------~-- 72 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAA-MEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRAR-------G-- 72 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHH-SSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBS-------S--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc-ccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHH-------H--
Confidence 57899999999999999999999876432 23344444433333334 5668999999998655433221 1
Q ss_pred cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 117 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
...+|++++|++++. .........+..+.. . ..|+++|+||+|+..
T Consensus 73 ~~~aD~vILVVDa~d-g~~~qt~e~l~~~~~---~--~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 73 TQVTDIVILVVAADD-GVMKQTVESIQHAKD---A--HVPIVLAINKCDKAE 118 (537)
T ss_dssp SBSBSSCEEECBSSS-CCCHHHHHHHHHHHT---T--TCCEEECCBSGGGTT
T ss_pred HccCCEEEEEEECCC-CccHHHHHHHHHHHH---c--CCcEEEEEecccccc
Confidence 147899999977654 233333333333332 2 259999999999864
No 171
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.30 E-value=6.2e-11 Score=103.97 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=71.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccc--ccCCCCCCCeeEEEEeee---------------C--------CeEEEE
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVT--VSTFQSEGPRPVMVSRSR---------------A--------GFTLNI 91 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~--~~~~~~~t~~~~~~~~~~---------------~--------~~~~~v 91 (243)
...++|+++|..++|||||+++|+|..... ....++.|.........+ . ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 356999999999999999999999764211 111222233322111111 0 167999
Q ss_pred EeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 92 VDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 92 iDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
|||||.. .+...+...+ ..+|++|+|++++.........+.+..+.. ++. .|+++|+||+|+.
T Consensus 88 iDtPGh~-------~f~~~~~~~~--~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-~~~---~~iivviNK~Dl~ 150 (410)
T 1kk1_A 88 IDAPGHE-------ALMTTMLAGA--SLMDGAILVIAANEPCPRPQTREHLMALQI-IGQ---KNIIIAQNKIELV 150 (410)
T ss_dssp EECSSHH-------HHHHHHHHCG--GGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTC---CCEEEEEECGGGS
T ss_pred EECCChH-------HHHHHHHhhh--hhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEECccCC
Confidence 9999973 2222222222 377999999887642113334444444332 332 5899999999986
No 172
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.29 E-value=5.8e-11 Score=110.52 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=74.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccc-----c------cC------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT-----V------ST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~-----~------~~------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~ 100 (243)
...+|+++|.+|+|||||+|+|++..... + .+ ....|.........+.+..+.+|||||+.+.
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 46899999999999999999999421100 0 01 1122333334456677899999999999653
Q ss_pred CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..++.+.++ .+|++|+|++... .........+..+... ..|+++|+||+|+.
T Consensus 89 ---~~~~~~~l~------~aD~~llVvDa~~-g~~~~~~~~~~~~~~~-----~~p~ilviNK~Dl~ 140 (693)
T 2xex_A 89 ---TVEVERSLR------VLDGAVTVLDAQS-GVEPQTETVWRQATTY-----GVPRIVFVNKMDKL 140 (693)
T ss_dssp ---CHHHHHHHH------HCSEEEEEEETTT-BSCHHHHHHHHHHHHT-----TCCEEEEEECTTST
T ss_pred ---HHHHHHHHH------HCCEEEEEECCCC-CCcHHHHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence 334444443 6899999977754 2344444444444332 36999999999986
No 173
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.26 E-value=2.6e-12 Score=114.91 Aligned_cols=115 Identities=14% Similarity=0.074 Sum_probs=75.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~ 117 (243)
++.+|+++|..++|||||+++|++.... ....++.|.+...+...+++..+.+|||||+.+...... + ..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~-------~--~~ 72 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRA-------R--GA 72 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBC-------S--SS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHH-------H--HH
Confidence 5789999999999999999999976432 222233343333334456778899999999876543321 1 11
Q ss_pred CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 118 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
..+|++++|++++.. ........+..+.. ...|+++++||+|+..
T Consensus 73 ~~aD~aILVVda~~g-~~~qT~e~l~~~~~-----~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 73 QATDIVVLVVAADDG-VMPQTIEAIQHAKA-----AQVPVVVAVNKIDKPE 117 (501)
T ss_dssp BSCSSEEEEEETTTB-SCTTTHHHHHHHHH-----TTCCEEEEEECSSSST
T ss_pred hhCCEEEEEeecccC-ccHHHHHHHHHHHh-----cCceEEEEEEeccccc
Confidence 478999999887642 22223333333322 1368999999999863
No 174
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.25 E-value=8.4e-11 Score=103.06 Aligned_cols=119 Identities=16% Similarity=0.087 Sum_probs=70.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccc--ccCCCCCCCeeEEEEeee---------------C--------CeEEEEE
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT--VSTFQSEGPRPVMVSRSR---------------A--------GFTLNIV 92 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~--~~~~~~~t~~~~~~~~~~---------------~--------~~~~~vi 92 (243)
..++|+++|..++|||||+++|+|..... ....++.|.......... . ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 57999999999999999999999764211 111122233221111100 1 1679999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 93 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 93 DTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
||||.. .+...+.+ ....+|++|+|++++.........+.+..+. .++. .|+++|+||+|+.+.
T Consensus 87 DtPGh~-------~f~~~~~~--~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~l~~---~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 87 DSPGHE-------TLMATMLS--GASLMDGAILVIAANEPCPQPQTKEHLMALE-ILGI---DKIIIVQNKIDLVDE 150 (408)
T ss_dssp ECSSHH-------HHHHHHHT--TCSCCSEEEEEEETTSCSSCHHHHHHHHHHH-HTTC---CCEEEEEECTTSSCT
T ss_pred ECCCHH-------HHHHHHHH--hHhhCCEEEEEEECCCCCCCchhHHHHHHHH-HcCC---CeEEEEEEccCCCCH
Confidence 999972 22222221 1246799999988764211333344444333 2332 589999999999643
No 175
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.25 E-value=3.8e-11 Score=103.88 Aligned_cols=101 Identities=15% Similarity=0.195 Sum_probs=68.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 120 (243)
+|+++|.+++|||||+++|+.. ..|.........+.+..+.+|||||+.+. .......+ ..+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~---------giTi~~~~~~~~~~~~~i~iiDtPGh~~f---~~~~~~~~------~~a 84 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK---------GTSSDITMYNNDKEGRNMVFVDAHSYPKT---LKSLITAL------NIS 84 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE---------EEESSSEEEEECSSSSEEEEEECTTTTTC---HHHHHHHH------HTC
T ss_pred EEEEECCCCCCHHHHHHHHHhC---------CEEEEeeEEEEecCCeEEEEEECCChHHH---HHHHHHHH------HHC
Confidence 9999999999999999999811 12223334455667889999999999643 22333333 389
Q ss_pred cEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccE-EEEEe-CCCC
Q 026113 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRA-LIVLT-HAQL 166 (243)
Q Consensus 121 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~-ivV~t-k~D~ 166 (243)
|++|+|++ +. .......+.+..+.. .+ .|. ++|+| |+|+
T Consensus 85 D~ailVvd-~~-g~~~qt~e~~~~~~~-~~----i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 85 DIAVLCIP-PQ-GLDAHTGECIIALDL-LG----FKHGIIALTRSDST 125 (370)
T ss_dssp SEEEEEEC-TT-CCCHHHHHHHHHHHH-TT----CCEEEEEECCGGGS
T ss_pred CEEEEEEc-CC-CCcHHHHHHHHHHHH-cC----CCeEEEEEEeccCC
Confidence 99999977 43 234444444444433 23 355 99999 9997
No 176
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.23 E-value=1.9e-11 Score=108.89 Aligned_cols=117 Identities=11% Similarity=0.053 Sum_probs=63.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccc------------------------ccC------CCCCCCeeEEEEeeeCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVT------------------------VST------FQSEGPRPVMVSRSRAG 86 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~------------------------~~~------~~~~t~~~~~~~~~~~~ 86 (243)
+..++|+++|..++|||||+++|++..... ..+ ..+.|..........++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 357999999999999999999997421000 000 01122222222345568
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCccc----C--hhHHHHHHHHHHHhccccccc-EEE
Q 026113 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV----D--NLDKQITRAITDNFGEQIWKR-ALI 159 (243)
Q Consensus 87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~----~--~~~~~~l~~l~~~~~~~~~~~-~iv 159 (243)
..+.+|||||+.+.. ..+...+ ..+|++|+|++++...+ . ......+... ...+ .| +++
T Consensus 121 ~~~~iiDtPGh~~f~-------~~~~~~~--~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~~~----vp~iiv 186 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYV-------TNMINGA--SQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RTQG----INHLVV 186 (467)
T ss_dssp EEEEECCCCC------------------T--TSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HHTT----CSSEEE
T ss_pred eEEEEEECCCcHHHH-------HHHHhhc--ccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HHcC----CCEEEE
Confidence 899999999985431 1222222 48999999988754211 0 1122222222 2222 34 999
Q ss_pred EEeCCCCC
Q 026113 160 VLTHAQLS 167 (243)
Q Consensus 160 V~tk~D~~ 167 (243)
|+||+|+.
T Consensus 187 viNK~Dl~ 194 (467)
T 1r5b_A 187 VINKMDEP 194 (467)
T ss_dssp EEECTTST
T ss_pred EEECccCC
Confidence 99999985
No 177
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.23 E-value=5.7e-11 Score=110.56 Aligned_cols=115 Identities=14% Similarity=0.104 Sum_probs=72.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcc-----cc------cC------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAV-----TV------ST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~-----~~------~~------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~ 100 (243)
...+|+++|.+|+|||||+|+|+..... .+ .+ ....|.........+.+..+.+|||||+.+.
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 4689999999999999999999832100 00 00 1122333334455677889999999999653
Q ss_pred CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..++.+.++ .+|++|+|++.... ........+..+... ..|+++|+||+|+.
T Consensus 91 ---~~~~~~~l~------~aD~~ilVvDa~~g-~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~ 142 (691)
T 1dar_A 91 ---TIEVERSMR------VLDGAIVVFDSSQG-VEPQSETVWRQAEKY-----KVPRIAFANKMDKT 142 (691)
T ss_dssp ---HHHHHHHHH------HCSEEEEEEETTTC-SCHHHHHHHHHHHHT-----TCCEEEEEECTTST
T ss_pred ---HHHHHHHHH------HCCEEEEEEECCCC-cchhhHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence 233333443 78999999777542 333333333333321 36999999999986
No 178
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.23 E-value=7.8e-11 Score=99.16 Aligned_cols=124 Identities=19% Similarity=0.233 Sum_probs=59.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC------CCCCe--eEEEEeeeC--CeEEEEEeCCCCCCCCCC---c
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ------SEGPR--PVMVSRSRA--GFTLNIVDTPGLIEGGYV---N 104 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~------~~t~~--~~~~~~~~~--~~~~~viDTPG~~~~~~~---~ 104 (243)
-.++|+++|++|+|||||+|.|+|...+.....+ ..+.. ......... ...+.+|||||+++.... .
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4699999999999999999999987443322211 01111 111122222 247899999999543110 0
Q ss_pred HHHHH----HHHHHH---h--------cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 105 YHAIQ----LIKRFL---L--------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 105 ~~~~~----~~~~~~---~--------~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..... ....++ + ...++++||++......+...+.. .+.... . ..++++|+||+|+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~---~l~~l~-~--~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVA---FMKAIH-N--KVNIVPVIAKADTL 168 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHH---HHHHHT-T--TSCEEEEECCGGGS
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHH---HHHHHH-h--cCCEEEEEEeCCCC
Confidence 11111 111222 1 123566777744332235555543 333332 2 25899999999986
No 179
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.23 E-value=8.5e-11 Score=102.96 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCCCC----CcHHHHHHHHHH
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGY----VNYHAIQLIKRF 114 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~viDTPG~~~~~~----~~~~~~~~~~~~ 114 (243)
-.|+|+|.+|||||||+|+|++... .....+.+|..+........+ ..+.++||||+.+... ......+.+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~--- 233 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHI--- 233 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH---
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHH---
Confidence 3589999999999999999998864 345555556555555555565 7899999999965321 222222222
Q ss_pred HhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 115 ~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..++++|+++++. .........+.+.+......-..+|.++|+||+|+.
T Consensus 234 ---era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 234 ---ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp ---TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred ---HHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 4789999998875 121122222233333221111237999999999985
No 180
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.23 E-value=1.7e-12 Score=112.44 Aligned_cols=121 Identities=18% Similarity=0.137 Sum_probs=76.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC-----CcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH-HHHHH
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGE-----KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA-IQLIK 112 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~-~~~~~ 112 (243)
..+|+++|.+|+|||||+|+|++. ....++..+++|....... . +..+.++||||+.+.....+.. .+.+.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~--~-~~~~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP--L-ESGATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE--C-STTCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE--e-CCCeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 468999999999999999999987 3445667777776544432 2 2348999999998765332211 12333
Q ss_pred HHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 113 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 113 ~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
.++....++.++++++....-+.. ....+..+. ....|+++++||.|...
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g-~l~~l~~l~-----~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFG-GLARLDYIK-----GGRRSFVCYMANELTVH 288 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEET-TTEEEEEEE-----SSSEEEEEEECTTSCEE
T ss_pred HHhcccccCceEEEEcCCceEEEC-CEEEEEEcc-----CCCceEEEEecCCcccc
Confidence 333446889999996664332111 111111111 12358999999999763
No 181
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.22 E-value=1e-12 Score=120.28 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=56.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccC------------------------------CCCCCCeeEEEEeeeCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST------------------------------FQSEGPRPVMVSRSRAG 86 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~ 86 (243)
+..++|+++|.+++|||||+|+|++........ .++.|...........+
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 355899999999999999999997532111100 12233333334445567
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcc----c--ChhHHHHHHHHHHHhcccccccEEEE
Q 026113 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR----V--DNLDKQITRAITDNFGEQIWKRALIV 160 (243)
Q Consensus 87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~----~--~~~~~~~l~~l~~~~~~~~~~~~ivV 160 (243)
..+.||||||+.+..... ...+ ..+|++|+|++++... + .......+..+.. .+. .++|+|
T Consensus 255 ~~i~iiDTPGh~~f~~~~---~~~~------~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgi---p~iIvv 321 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGM---IAGA------SSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGI---SEIVVS 321 (592)
T ss_dssp ----CCEEESSSEEEEEC---CC-------------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSC---CCEEEE
T ss_pred eEEEEEECCChHHHHHHH---HHHH------hhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeEEEE
Confidence 889999999986432211 1122 3789999997765311 1 2333333333332 231 359999
Q ss_pred EeCCCCC
Q 026113 161 LTHAQLS 167 (243)
Q Consensus 161 ~tk~D~~ 167 (243)
+||+|+.
T Consensus 322 iNKiDl~ 328 (592)
T 3mca_A 322 VNKLDLM 328 (592)
T ss_dssp EECGGGG
T ss_pred Eeccccc
Confidence 9999986
No 182
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.22 E-value=2.2e-12 Score=111.59 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=72.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC------cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHH
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK------AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLI 111 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~-~~~~~ 111 (243)
..+|+++|.+|+|||||+|+|++.. ...++..+++|....... . +..+.++||||+.+.....+. ..+.+
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~-~~~~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--L-DEESSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--S-SSSCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--e-cCCeEEEeCCCcCcHHHHHHHhhHHHH
Confidence 4789999999999999999999863 233556666665544332 2 223889999999877543221 12344
Q ss_pred HHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCC
Q 026113 112 KRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (243)
Q Consensus 112 ~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 168 (243)
..++....++.++++++.+..-+.. ....+..+. ....|+++++||+|...
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g-~l~~~d~l~-----~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFS-GLARFDYVS-----GGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEET-TTEEEEEEE-----SSSEEEEEEECTTSCEE
T ss_pred HHhccccccCceEEEEcCCCEEEEc-ceEEEEEec-----CCCceEEEEecCccccc
Confidence 4444446788888886554322111 111111111 12368999999999763
No 183
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.22 E-value=3.6e-11 Score=100.27 Aligned_cols=67 Identities=21% Similarity=0.331 Sum_probs=44.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH 106 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~ 106 (243)
..+++++++|.+|+|||||+|+|+|...+.++..+++|....... .+..+.++||||+..+...+.+
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~ 184 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK---VGKELELLDTPGILWPKFEDEL 184 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE---ETTTEEEEECCCCCCSCCCCHH
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE---eCCCEEEEECcCcCCCCCCCHH
Confidence 467999999999999999999999998777777777665543221 2457999999999887665544
No 184
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.21 E-value=2e-11 Score=104.95 Aligned_cols=84 Identities=20% Similarity=0.239 Sum_probs=56.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCCCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGGY 102 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~viDTPG~~~~~~ 102 (243)
++|+++|.+|+|||||+|+|++.. +.+..+|.+|..+......+.+ ..+.+|||||+.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 789999999999999999999887 4566666666655443333443 4799999999975421
Q ss_pred ----CcHHHHHHHHHHHhcCCCcEEEEEEeCC
Q 026113 103 ----VNYHAIQLIKRFLLNKTIDVLLYVDRLD 130 (243)
Q Consensus 103 ----~~~~~~~~~~~~~~~~~~~~il~v~~~d 130 (243)
....++..++ ++|++++|++..
T Consensus 82 ~~~gl~~~fl~~ir------~ad~il~VvD~~ 107 (363)
T 1jal_A 82 KGEGLGNKFLANIR------ETDAIGHVVRCF 107 (363)
T ss_dssp HHGGGTCCHHHHHH------TCSEEEEEEECS
T ss_pred ccchHHHHHHHHHH------hcCeEEEEEecC
Confidence 1122333343 899999998774
No 185
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.18 E-value=1.9e-10 Score=95.38 Aligned_cols=123 Identities=20% Similarity=0.301 Sum_probs=69.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCccccc-------CCCCCCCee-EEEEeeeCC--eEEEEEeCCCCCCCCCCc---H
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVS-------TFQSEGPRP-VMVSRSRAG--FTLNIVDTPGLIEGGYVN---Y 105 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~-------~~~~~t~~~-~~~~~~~~~--~~~~viDTPG~~~~~~~~---~ 105 (243)
.++++++|++|+|||||+|.|+|......+ ..+...... ..+..+..+ ..+.++|+||++...... +
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 478999999999999999999986533222 111111111 111111122 268999999997643211 1
Q ss_pred HHHHHH----HHHH----h--------cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 106 HAIQLI----KRFL----L--------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 106 ~~~~~~----~~~~----~--------~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.+.+.+ ..+. + ...+++.+++++.....+...+..+++.+.+. .++++|+||+|..
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~l 153 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTM 153 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGS
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccC
Confidence 222221 1111 1 12368888885543334777777777666543 5899999999986
No 186
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.18 E-value=1.3e-10 Score=110.43 Aligned_cols=115 Identities=17% Similarity=0.233 Sum_probs=70.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccC---------------CCCCCCeeEEEEeeeC----------------C
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRA----------------G 86 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~---------------~~~~t~~~~~~~~~~~----------------~ 86 (243)
...+|+++|..|+|||||+|+|++........ ....|.........+. +
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 56899999999999999999999652111100 0111221111222222 5
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (243)
Q Consensus 87 ~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 166 (243)
..+.+|||||+.+.. .++...++ .+|++|+|+++... ........+.... .. ..|+++|+||+|+
T Consensus 98 ~~i~liDTPG~~df~---~~~~~~l~------~aD~ailVvDa~~g-~~~qt~~~~~~~~---~~--~~p~ilviNK~D~ 162 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS---SEVTAALR------VTDGALVVVDTIEG-VCVQTETVLRQAL---GE--RIKPVVVINKVDR 162 (842)
T ss_dssp EEEEEECCCCCCSSC---HHHHHHHH------TCSEEEEEEETTTB-SCHHHHHHHHHHH---HT--TCEEEEEEECHHH
T ss_pred ceEEEEECcCchhhH---HHHHHHHH------hCCEEEEEEeCCCC-CCHHHHHHHHHHH---Hc--CCCeEEEEECCCc
Confidence 689999999997643 34444443 89999999877542 2333333222222 22 2689999999998
Q ss_pred C
Q 026113 167 S 167 (243)
Q Consensus 167 ~ 167 (243)
.
T Consensus 163 ~ 163 (842)
T 1n0u_A 163 A 163 (842)
T ss_dssp H
T ss_pred c
Confidence 5
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.18 E-value=4.6e-10 Score=104.65 Aligned_cols=115 Identities=16% Similarity=0.124 Sum_probs=70.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccc-----cc------C------CCCCCCeeEEEEeeeCC-------eEEEEEe
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT-----VS------T------FQSEGPRPVMVSRSRAG-------FTLNIVD 93 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~-----~~------~------~~~~t~~~~~~~~~~~~-------~~~~viD 93 (243)
+..+|+++|..|+|||||+++|+...... +. + ....|.........+.+ ..+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 46899999999999999999997532100 00 0 01112222223344555 7899999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 94 TPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 94 TPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
|||..+. ..++...++ .+|++|+|++.... ........+..... ...|+++|+||+|+.
T Consensus 89 TPG~~df---~~~~~~~l~------~aD~aIlVvDa~~g-v~~qt~~~~~~~~~-----~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 89 TPGHVDF---TIEVERSMR------VLDGAVMVYCAVGG-VQPQSETVWRQANK-----YKVPRIAFVNKMDRM 147 (704)
T ss_pred CCCccch---HHHHHHHHH------HCCEEEEEEeCCCC-CcHHHHHHHHHHHH-----cCCCEEEEEeCCCcc
Confidence 9999653 223333333 78999999776532 22222223322221 136999999999985
No 188
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.18 E-value=1.2e-10 Score=106.51 Aligned_cols=114 Identities=11% Similarity=0.105 Sum_probs=70.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCe--eEEEEee----------------eCCeEEEEEeCCCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPR--PVMVSRS----------------RAGFTLNIVDTPGLIE 99 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~--~~~~~~~----------------~~~~~~~viDTPG~~~ 99 (243)
++.+|+++|.+++|||||+++|++..+..... .+.|.+ ....... +....+.+|||||+.+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~-ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREA-GGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccC-CceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 56899999999999999999999765321111 112221 1111110 1112599999999976
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
...... ++ ...+|++++|++++. .........+..+.. ...|+++|+||+|+.
T Consensus 83 F~~~~~-------r~--~~~aD~aILVvDa~~-Gv~~qT~e~l~~l~~-----~~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 83 FTTLRK-------RG--GALADLAILIVDINE-GFKPQTQEALNILRM-----YRTPFVVAANKIDRI 135 (594)
T ss_dssp CTTSBC-------SS--SBSCSEEEEEEETTT-CCCHHHHHHHHHHHH-----TTCCEEEEEECGGGS
T ss_pred HHHHHH-------HH--HhhCCEEEEEEECCC-CccHhHHHHHHHHHH-----cCCeEEEEecccccc
Confidence 643322 11 147899999988764 233444444444433 236999999999985
No 189
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.17 E-value=1.4e-10 Score=111.51 Aligned_cols=117 Identities=13% Similarity=0.051 Sum_probs=72.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCccc---------cc------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVT---------VS------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~llg~~~~~---------~~------~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~ 100 (243)
....++|+++|..++|||||+++|++..... .. ...+.|...........+..+.+|||||+.+
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed- 371 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD- 371 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH-
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH-
Confidence 3467999999999999999999998741100 00 0111122211223344678999999999842
Q ss_pred CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc-EEEEEeCCCCC
Q 026113 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS 167 (243)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~ 167 (243)
....+...+ ..+|++|+|++++.. ........+..+.. .+ .| +|+|+||+|+.
T Consensus 372 ------F~~~mi~ga--s~AD~aILVVDAtdG-v~~QTrEhL~ll~~-lg----IP~IIVVINKiDLv 425 (1289)
T 3avx_A 372 ------YVKNMITGA--AQMDGAILVVAATDG-PMPQTREHILLGRQ-VG----VPYIIVFLNKCDMV 425 (1289)
T ss_dssp ------HHHHHHHTS--CCCSEEEEEEETTTC-SCTTHHHHHHHHHH-HT----CSCEEEEEECCTTC
T ss_pred ------HHHHHHHHH--hhCCEEEEEEcCCcc-CcHHHHHHHHHHHH-cC----CCeEEEEEeecccc
Confidence 222333322 589999999887643 23334445544443 22 46 89999999985
No 190
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.16 E-value=1.1e-10 Score=106.61 Aligned_cols=115 Identities=17% Similarity=0.104 Sum_probs=62.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccc--------cC------CCCCCCeeEEEEeeeC-----CeEEEEEeCCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTV--------ST------FQSEGPRPVMVSRSRA-----GFTLNIVDTPGLI 98 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~--------~~------~~~~t~~~~~~~~~~~-----~~~~~viDTPG~~ 98 (243)
.-.+|+++|..++|||||+++|+....... .+ ..+.|.........+. +..+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 357999999999999999999986321100 00 0111222222233332 3579999999995
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+. ..++.+.++ .+|++|+|+++......+....+. .... . ..|+++|+||+|+.
T Consensus 83 dF---~~ev~~~l~------~aD~aILVVDa~~gv~~qt~~~~~-~~~~---~--~ipiIvViNKiDl~ 136 (599)
T 3cb4_D 83 DF---SYEVSRSLA------ACEGALLVVDAGQGVEAQTLANCY-TAME---M--DLEVVPVLNKIDLP 136 (599)
T ss_dssp GG---HHHHHHHHH------HCSEEEEEEETTTCCCTHHHHHHH-HHHH---T--TCEEEEEEECTTST
T ss_pred HH---HHHHHHHHH------HCCEEEEEEECCCCCCHHHHHHHH-HHHH---C--CCCEEEeeeccCcc
Confidence 43 223333333 789999998775422222222222 2221 1 26899999999985
No 191
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.15 E-value=1.5e-10 Score=105.74 Aligned_cols=115 Identities=13% Similarity=0.138 Sum_probs=64.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccc--------cC------CCCCCCeeEEEEeee---CC--eEEEEEeCCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTV--------ST------FQSEGPRPVMVSRSR---AG--FTLNIVDTPGLI 98 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~--------~~------~~~~t~~~~~~~~~~---~~--~~~~viDTPG~~ 98 (243)
.-.+|+++|..++|||||+++|++...... .+ ..+.|.........+ ++ ..+.+|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 357999999999999999999985321000 00 011122111122222 22 578899999996
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
+. ..++.+.+ ..+|++|+|+++... ........+.... .. ..|+++|+||+|+.
T Consensus 85 dF---~~ev~r~l------~~aD~aILVVDa~~g-v~~qt~~~~~~a~---~~--~ipiIvviNKiDl~ 138 (600)
T 2ywe_A 85 DF---SYEVSRAL------AACEGALLLIDASQG-IEAQTVANFWKAV---EQ--DLVIIPVINKIDLP 138 (600)
T ss_dssp GG---HHHHHHHH------HTCSEEEEEEETTTB-CCHHHHHHHHHHH---HT--TCEEEEEEECTTST
T ss_pred hH---HHHHHHHH------HhCCEEEEEEECCCC-ccHHHHHHHHHHH---HC--CCCEEEEEeccCcc
Confidence 53 22333333 388999999777542 2222222222222 11 36899999999985
No 192
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.14 E-value=5e-10 Score=98.00 Aligned_cols=124 Identities=17% Similarity=0.184 Sum_probs=64.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccC---CCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCc---HHH--
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVST---FQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVN---YHA-- 107 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~---~~~~t~~~~~~~~~~~~--~~~~viDTPG~~~~~~~~---~~~-- 107 (243)
..++++++|++|+|||||+|.|+|..+..... .+..+.....+.....+ ..+.++||||++...... ..+
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 34679999999999999999999985321111 11111111122222222 268999999997532110 011
Q ss_pred --HHHHHHHHhc-------------CCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 108 --IQLIKRFLLN-------------KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 108 --~~~~~~~~~~-------------~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
...+..++.. ..+|++++++......+...+..+++.+. . ..|+|+|+||+|..
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~----~--~~~vI~Vi~KtD~L 189 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD----S--KVNIIPIIAKADAI 189 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC----S--CSEEEEEESCGGGS
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh----h--CCCEEEEEcchhcc
Confidence 1111122210 12355454422222236677766655554 1 36999999999986
No 193
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.13 E-value=3e-11 Score=99.28 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=31.4
Q ss_pred CCcEEEEEEeCCCc--ccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 119 TIDVLLYVDRLDVY--RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 119 ~~~~il~v~~~d~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
++|++++|++++.. ...+....++..+.+.... ...|+++|+||+|+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~-~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK-TKKPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHH-TTCCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhcc-CCCCEEEEEEccccc
Confidence 58999999888653 2222334566666554221 136999999999985
No 194
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.11 E-value=1e-10 Score=101.46 Aligned_cols=87 Identities=24% Similarity=0.271 Sum_probs=49.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIE 99 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~viDTPG~~~ 99 (243)
...++|+++|.+|+|||||+|+|++... .++.+|.+|..+......+.+ ..+.+|||||+..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 4678999999999999999999999875 566677777665555444433 3599999999976
Q ss_pred CCCCc----HHHHHHHHHHHhcCCCcEEEEEEeCC
Q 026113 100 GGYVN----YHAIQLIKRFLLNKTIDVLLYVDRLD 130 (243)
Q Consensus 100 ~~~~~----~~~~~~~~~~~~~~~~~~il~v~~~d 130 (243)
..... ..+...++ ++|++++|++..
T Consensus 99 ~as~~~glg~~~l~~ir------~aD~Il~VvD~~ 127 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHIS------ACDGIFHLTRAF 127 (396)
T ss_dssp --------CCHHHHHHH------TSSSEEEEEEC-
T ss_pred ccchhhHHHHHHHHHHH------hcCeEEEEEecC
Confidence 44321 12333343 899999997763
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.07 E-value=2.2e-10 Score=98.65 Aligned_cols=121 Identities=18% Similarity=0.278 Sum_probs=68.8
Q ss_pred HHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHh------CCCcccccCCCCCCCe-----------------eEEEE
Q 026113 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQSEGPR-----------------PVMVS 81 (243)
Q Consensus 25 l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~ll------g~~~~~~~~~~~~t~~-----------------~~~~~ 81 (243)
....+..+.+......+|+++|.+|+|||||++.|. |.++......+..+.. .....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i 144 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYI 144 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEE
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeE
Confidence 334455554444577899999999999999999986 3333222111111110 00000
Q ss_pred ----------------------eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHH
Q 026113 82 ----------------------RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDK 139 (243)
Q Consensus 82 ----------------------~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~ 139 (243)
....+..+.||||||+... . ...+ ..+|++++|++.... +...
T Consensus 145 ~~~~~~~~~~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~---~---~~~~------~~aD~vl~V~d~~~~---~~~~ 209 (355)
T 3p32_A 145 RPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQS---E---VAVA------NMVDTFVLLTLARTG---DQLQ 209 (355)
T ss_dssp ECCC--CCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCSSH---H---HHHH------TTCSEEEEEEESSTT---CTTT
T ss_pred EECCCCccccchhHHHHHHHHHHhhCCCCEEEEeCCCCCcH---H---HHHH------HhCCEEEEEECCCCC---ccHH
Confidence 0225678999999997431 1 1111 589999999765421 1111
Q ss_pred HHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 140 QITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 140 ~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.+.... ...|.++|+||+|+.
T Consensus 210 ----~l~~~~---~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 210 ----GIKKGV---LELADIVVVNKADGE 230 (355)
T ss_dssp ----TCCTTS---GGGCSEEEEECCCGG
T ss_pred ----HHHHhH---hhcCCEEEEECCCCc
Confidence 111111 125899999999984
No 196
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.07 E-value=2.8e-09 Score=98.78 Aligned_cols=115 Identities=14% Similarity=0.144 Sum_probs=74.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccc-----c------cC------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT-----V------ST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~-----~------~~------~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~ 100 (243)
...+|+++|.+|+|||||++.|++..... + .+ ....+.........+.+..+.+|||||+.+.
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 45799999999999999999999432110 0 00 0122333444555667889999999998542
Q ss_pred CCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..+....++ .+|++++|+++.. ........++..+... ..|+++|+||+|+.
T Consensus 88 ---~~~~~~~l~------~ad~~ilVvD~~~-g~~~qt~~~~~~~~~~-----~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 ---VGEIRGALE------AADAALVAVSAEA-GVQVGTERAWTVAERL-----GLPRMVVVTKLDKG 139 (665)
T ss_dssp ---HHHHHHHHH------HCSEEEEEEETTT-CSCHHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred ---HHHHHHHHh------hcCcEEEEEcCCc-ccchhHHHHHHHHHHc-----cCCEEEEecCCchh
Confidence 223333333 7899999977643 2444444444444432 26999999999984
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.06 E-value=4.1e-10 Score=97.14 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee---------------------CCeEEEEEeCCCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR---------------------AGFTLNIVDTPGLI 98 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~---------------------~~~~~~viDTPG~~ 98 (243)
++|+++|.+|+|||||+|+|++.. +.+..++.+|..+......+ .+..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 579999999999999999999875 34555555555444333322 24579999999997
Q ss_pred CCCC----CcHHHHHHHHHHHhcCCCcEEEEEEeCC
Q 026113 99 EGGY----VNYHAIQLIKRFLLNKTIDVLLYVDRLD 130 (243)
Q Consensus 99 ~~~~----~~~~~~~~~~~~~~~~~~~~il~v~~~d 130 (243)
.... ....+...++ .+|++++|++..
T Consensus 81 ~~a~~~~~lg~~fl~~ir------~ad~ii~VvD~~ 110 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIR------EVAAIAHVLRCF 110 (368)
T ss_dssp CCCCSSSCTTHHHHHHHH------TCSEEEEEEECC
T ss_pred ccccccchHHHHHHHHHH------hCCEEEEEEECC
Confidence 6532 2334444444 899999998774
No 198
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.03 E-value=4.8e-10 Score=97.35 Aligned_cols=87 Identities=20% Similarity=0.241 Sum_probs=66.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIE 99 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~viDTPG~~~ 99 (243)
....++.++|.+|+|||||+|+|+|...+.++.+|.+|..+......+.+ ..+.+|||||+..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 35689999999999999999999998765777888888777766666655 4689999999875
Q ss_pred CCCC----cHHHHHHHHHHHhcCCCcEEEEEEeC
Q 026113 100 GGYV----NYHAIQLIKRFLLNKTIDVLLYVDRL 129 (243)
Q Consensus 100 ~~~~----~~~~~~~~~~~~~~~~~~~il~v~~~ 129 (243)
.... ...+...+ .++|++++|++.
T Consensus 98 ~~s~~e~L~~~fl~~i------r~~d~il~Vvd~ 125 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHV------RAVDAIYQVVRA 125 (392)
T ss_dssp CCCSSSSSCHHHHHHH------TTCSEEEEEEEC
T ss_pred CCcHHHHHHHHHHHHH------HHHHHHHHHHhc
Confidence 4332 22333333 489999999776
No 199
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.02 E-value=1.2e-09 Score=93.43 Aligned_cols=118 Identities=21% Similarity=0.182 Sum_probs=66.1
Q ss_pred HHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhC------CCcccccCCCCCCC--------------------eeEEEE
Q 026113 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG------EKAVTVSTFQSEGP--------------------RPVMVS 81 (243)
Q Consensus 28 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg------~~~~~~~~~~~~t~--------------------~~~~~~ 81 (243)
.+..+.....+...|+++|.+|+||||++|.|++ .++......+..+. .+....
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~ 124 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPV 124 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEE
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecC
Confidence 3444433334678999999999999999999963 33322222121111 000000
Q ss_pred -------------------eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHH
Q 026113 82 -------------------RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQIT 142 (243)
Q Consensus 82 -------------------~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l 142 (243)
..+.+.++.+|||||+.+.. . .+. ..+|++++|++.... + ..+.+
T Consensus 125 ~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~---~----~~~-----~~aD~vl~Vvd~~~~---~-~~~~l 188 (341)
T 2p67_A 125 PSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSE---T----EVA-----RMVDCFISLQIAGGG---D-DLQGI 188 (341)
T ss_dssp CC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHH---H----HHH-----TTCSEEEEEECC----------CCC
T ss_pred ccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchH---H----HHH-----HhCCEEEEEEeCCcc---H-HHHHH
Confidence 01457789999999986421 1 111 589999999665321 1 10111
Q ss_pred HHHHHHhcccccccEEEEEeCCCCC
Q 026113 143 RAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 143 ~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.. ... ..|.++|+||+|+.
T Consensus 189 ~~--~~~----~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 189 KK--GLM----EVADLIVINKDDGD 207 (341)
T ss_dssp CH--HHH----HHCSEEEECCCCTT
T ss_pred HH--hhh----cccCEEEEECCCCC
Confidence 10 111 25889999999985
No 200
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.00 E-value=6e-09 Score=94.45 Aligned_cols=124 Identities=11% Similarity=0.086 Sum_probs=77.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcc---------------cccC------CCCCCCeeEEEEeeeCCeEEEEEeCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAV---------------TVST------FQSEGPRPVMVSRSRAGFTLNIVDTPG 96 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~---------------~~~~------~~~~t~~~~~~~~~~~~~~~~viDTPG 96 (243)
+.-+|.++|..++|||||..+|+-..-. .+.+ ..+.|.........|.+..+.||||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 3579999999999999999999722100 0111 112233334556788999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHHH
Q 026113 97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (243)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~ 176 (243)
..|. ..++.+.++ -+|..|+|++... -. +.....+....... ..|.++++||+|.. ..++..
T Consensus 110 HvDF---~~Ev~raL~------~~DgAvlVvda~~-GV-~~qT~~v~~~a~~~----~lp~i~fINK~Dr~---~ad~~~ 171 (548)
T 3vqt_A 110 HQDF---SEDTYRVLT------AVDSALVVIDAAK-GV-EAQTRKLMDVCRMR----ATPVMTFVNKMDRE---ALHPLD 171 (548)
T ss_dssp GGGC---SHHHHHHHH------SCSEEEEEEETTT-BS-CHHHHHHHHHHHHT----TCCEEEEEECTTSC---CCCHHH
T ss_pred cHHH---HHHHHHHHH------hcCceEEEeecCC-Cc-ccccHHHHHHHHHh----CCceEEEEecccch---hcchhH
Confidence 9765 345555665 8899999966543 12 22322222222222 26999999999973 335555
Q ss_pred HHH
Q 026113 177 FCS 179 (243)
Q Consensus 177 ~~~ 179 (243)
.+.
T Consensus 172 ~~~ 174 (548)
T 3vqt_A 172 VMA 174 (548)
T ss_dssp HHH
T ss_pred hhh
Confidence 544
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.97 E-value=1.4e-09 Score=93.29 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg 61 (243)
....|+++|.+|||||||+|.|++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999999996
No 202
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.96 E-value=2.7e-09 Score=97.10 Aligned_cols=66 Identities=21% Similarity=0.206 Sum_probs=45.5
Q ss_pred cCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEe-------eeCCeEEEEEeCCCCCCCCC
Q 026113 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR-------SRAGFTLNIVDTPGLIEGGY 102 (243)
Q Consensus 35 ~~~~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~-------~~~~~~~~viDTPG~~~~~~ 102 (243)
......+|+++|.+|+|||||+|+|+|..... ..++++..++.... ...+..+.++||||+.+...
T Consensus 34 i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~ 106 (592)
T 1f5n_A 34 ITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEK 106 (592)
T ss_dssp CCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGG
T ss_pred ccCCCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccc
Confidence 34467899999999999999999999987532 22222222221111 12567899999999987543
No 203
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.91 E-value=1.2e-09 Score=90.03 Aligned_cols=60 Identities=25% Similarity=0.374 Sum_probs=40.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~ 102 (243)
++++++|.+|+|||||+|+|++.....++..+++|....... .+..+.+|||||+.+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~---~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS---LENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE---CTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE---eCCCEEEEECCCcccCcC
Confidence 699999999999999999999988656666666555443222 245789999999987765
No 204
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.90 E-value=1e-08 Score=91.71 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=68.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh------CCCcccccCCCCCC-C-----------eeEEEE-----------------e
Q 026113 38 NTLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQSEG-P-----------RPVMVS-----------------R 82 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~ll------g~~~~~~~~~~~~t-~-----------~~~~~~-----------------~ 82 (243)
++..|+++|.+|+||||+++.|. |.++..+..-+... . ....+. .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999 77654332211000 0 000011 0
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc-EEEEE
Q 026113 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVL 161 (243)
Q Consensus 83 ~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~ 161 (243)
.+.+..+.||||||.... +......+........+|.+++|++... . .......+.+.+. .| .++|+
T Consensus 180 ~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~i~pd~vllVvDa~~--g-~~~~~~a~~~~~~------~~i~gvVl 247 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQ---EDSLFEEMLQVANAIQPDNIVYVMDASI--G-QACEAQAKAFKDK------VDVASVIV 247 (504)
T ss_dssp HHTTCCEEEEEECCCCTT---CHHHHHHHHHHHHHHCCSEEEEEEETTC--C-TTHHHHHHHHHHH------HCCCCEEE
T ss_pred HHCCCcEEEEeCCCCccc---chhHHHHHHHHHhhhcCceEEEEEeccc--c-ccHHHHHHHHHhh------cCceEEEE
Confidence 125678999999998643 2233333332221127899999966543 1 2233333333332 36 49999
Q ss_pred eCCCCC
Q 026113 162 THAQLS 167 (243)
Q Consensus 162 tk~D~~ 167 (243)
||+|..
T Consensus 248 NK~D~~ 253 (504)
T 2j37_W 248 TKLDGH 253 (504)
T ss_dssp ECTTSC
T ss_pred eCCccc
Confidence 999975
No 205
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.86 E-value=3.4e-09 Score=84.51 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
...+|+++|.+|+|||||+|.|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999864
No 206
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.82 E-value=4.6e-09 Score=89.68 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=26.1
Q ss_pred HHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhC
Q 026113 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 28 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg 61 (243)
.++.+.-.-.+...+.++|.+|+|||||+|.|+|
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4444443334567899999999999999999983
No 207
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.70 E-value=2.1e-07 Score=85.37 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=28.2
Q ss_pred HHHHHHhhhhcCC----CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 25 LLELLGKLKQENV----NTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 25 l~~~~~~~~~~~~----~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
+.+.+..++..+. .-..|+++|++|||||||++.|.|..
T Consensus 27 ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 27 CIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp HHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred HHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCCC
Confidence 4444555554432 22359999999999999999999974
No 208
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.70 E-value=8.8e-09 Score=84.31 Aligned_cols=33 Identities=18% Similarity=0.374 Sum_probs=26.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHh-----CCCccccc
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSII-----GEKAVTVS 68 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~ll-----g~~~~~~~ 68 (243)
+.....++++|..|+||||+++.|. |.++..+.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 3467889999999999999999998 77654443
No 209
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.69 E-value=1.5e-07 Score=82.66 Aligned_cols=119 Identities=19% Similarity=0.137 Sum_probs=69.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh------CCCcccccCCCCCC------------CeeEEEE-----------------e
Q 026113 38 NTLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQSEG------------PRPVMVS-----------------R 82 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~ll------g~~~~~~~~~~~~t------------~~~~~~~-----------------~ 82 (243)
++..|+++|.+|+||||+++.|. |.++..+..-+... .....+. .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998887 44432221100000 0000000 0
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEe
Q 026113 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162 (243)
Q Consensus 83 ~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~t 162 (243)
...+..+.||||||... .+.....+++.......+|.+++|++.. . ........+.+.+.. ....+|+|
T Consensus 179 ~~~~~DvVIIDTaGrl~---~d~~lm~el~~i~~~~~pd~vlLVvDA~--~-gq~a~~~a~~f~~~~-----~i~gVIlT 247 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHK---EDKALIEEMKQISNVIHPHEVILVIDGT--I-GQQAYNQALAFKEAT-----PIGSIIVT 247 (443)
T ss_dssp HHTTCSEEEEECCCCSS---CCHHHHHHHHHHHHHHCCSEEEEEEEGG--G-GGGHHHHHHHHHHSC-----TTEEEEEE
T ss_pred HhCCCCEEEEECCCccc---chHHHHHHHHHHHHhhcCceEEEEEeCC--C-chhHHHHHHHHHhhC-----CCeEEEEE
Confidence 01346899999999853 3444555555544345789999995543 2 233333444444322 46789999
Q ss_pred CCCCC
Q 026113 163 HAQLS 167 (243)
Q Consensus 163 k~D~~ 167 (243)
|+|..
T Consensus 248 KlD~~ 252 (443)
T 3dm5_A 248 KLDGS 252 (443)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 99874
No 210
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.69 E-value=2.6e-07 Score=86.30 Aligned_cols=122 Identities=13% Similarity=0.147 Sum_probs=70.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcc-----ccc------C------CCCCCCeeEEEEeeeC-------CeEEEEEeCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAV-----TVS------T------FQSEGPRPVMVSRSRA-------GFTLNIVDTP 95 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~-----~~~------~------~~~~t~~~~~~~~~~~-------~~~~~viDTP 95 (243)
-+|.++|..++|||||..+|+-..-. .+. + ..+.|.........|. +..+.+||||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 58999999999999999998732110 000 0 0111222222333332 4689999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCCCCCCHH
Q 026113 96 GLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (243)
Q Consensus 96 G~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 175 (243)
|..|. ..++.+.++ -+|+.|+|++... -....-...++...+ .+ .|.++++||+|.. ..++.
T Consensus 94 GHvDF---~~Ev~~aLr------~~DgavlvVDave-GV~~qT~~v~~~a~~---~~--lp~i~~iNKiDr~---~a~~~ 155 (709)
T 4fn5_A 94 GHVDF---TIEVERSLR------VLDGAVVVFCGTS-GVEPQSETVWRQANK---YG--VPRIVYVNKMDRQ---GANFL 155 (709)
T ss_dssp SCTTC---HHHHHHHHH------HCSEEEEEEETTT-CSCHHHHHHHHHHHH---HT--CCEEEEEECSSST---TCCHH
T ss_pred CCccc---HHHHHHHHH------HhCeEEEEEECCC-CCchhHHHHHHHHHH---cC--CCeEEEEcccccc---CccHH
Confidence 99765 345555555 6799999966543 132322333333222 22 6999999999974 33455
Q ss_pred HHHH
Q 026113 176 VFCS 179 (243)
Q Consensus 176 ~~~~ 179 (243)
..++
T Consensus 156 ~~~~ 159 (709)
T 4fn5_A 156 RVVE 159 (709)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 211
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.60 E-value=3.8e-07 Score=77.28 Aligned_cols=78 Identities=9% Similarity=0.078 Sum_probs=48.0
Q ss_pred EEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHH-HHHHhcCCCcEEEEEEeCC-------CcccChhHHHHHHHHHHHhcc
Q 026113 80 VSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLI-KRFLLNKTIDVLLYVDRLD-------VYRVDNLDKQITRAITDNFGE 151 (243)
Q Consensus 80 ~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~-~~~~~~~~~~~il~v~~~d-------~~~~~~~~~~~l~~l~~~~~~ 151 (243)
......+..+.+|||+|+. ..+.+ ..|+ .+++++|+|+++. .....+.-..++.++......
T Consensus 160 ~~~~~~~v~l~iwDtgGQe--------~~R~~w~~yf--~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~ 229 (327)
T 3ohm_A 160 YPFDLQSVIFRMVDVGGQR--------SERRKWIHCF--ENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY 229 (327)
T ss_dssp EEEEETTEEEEEEEECCSH--------HHHTTGGGGC--SSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS
T ss_pred EEEEeeceeeEEEEcCCch--------hHHHHHHHHh--CCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh
Confidence 3445678899999999993 11111 1222 5899999998664 111122233445555555432
Q ss_pred c--ccccEEEEEeCCCCC
Q 026113 152 Q--IWKRALIVLTHAQLS 167 (243)
Q Consensus 152 ~--~~~~~ivV~tk~D~~ 167 (243)
. ...|+++++||+|+.
T Consensus 230 ~~~~~~~iiL~~NK~DL~ 247 (327)
T 3ohm_A 230 PWFQNSSVILFLNKKDLL 247 (327)
T ss_dssp GGGTTCEEEEEEECHHHH
T ss_pred hccCCceEEEEEECchhh
Confidence 1 236899999999984
No 212
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.60 E-value=3.4e-08 Score=91.17 Aligned_cols=113 Identities=15% Similarity=0.210 Sum_probs=70.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcc-----ccc------CC------CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAV-----TVS------TF------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~-----~~~------~~------~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~ 102 (243)
-+|.++|..++|||||..+|+...-. .+. +. .+.|.........|.+..+.++||||..|.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF-- 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF-- 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST--
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH--
Confidence 47899999999999999998722100 011 10 012223334456788899999999999764
Q ss_pred CcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
..++.+.+ .-+|+.|+|++... -....-...++...+ .+ .|.++++||+|..
T Consensus 81 -~~Ev~raL------~~~DgavlVVDa~~-GV~~qT~~v~~~a~~-~~----lp~i~~INKmDr~ 132 (638)
T 3j25_A 81 -LAEVYRSL------SVLDGAILLISAKD-GVQAQTRILFHALRK-MG----IPTIFFINKIDQN 132 (638)
T ss_dssp -HHHHHHHH------TTCSEEECCEESSC-TTCSHHHHHHHHHHH-HT----CSCEECCEECCSS
T ss_pred -HHHHHHHH------HHhCEEEEEEeCCC-CCcHHHHHHHHHHHH-cC----CCeEEEEeccccc
Confidence 33444444 38899999976643 122222223333222 22 5889999999974
No 213
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.59 E-value=3.3e-07 Score=80.08 Aligned_cols=117 Identities=19% Similarity=0.161 Sum_probs=64.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCC----CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF----QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKR 113 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~ 113 (243)
....++++|++|+|||||+|.|+|......+.. ...+........ .....+.++|+||++..... ..+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~-~~~~~ltv~D~~g~~~~~~~---~~~~L~~ 143 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFP---PDTYLEK 143 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCC---HHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc-cccCCeeehHhhcccchHHH---HHHHHHH
Confidence 456899999999999999999999542211111 111111122221 11236899999998643222 2222322
Q ss_pred HHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 114 ~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.- -...+.+++ ++.. +.......+...+... .+|+++|.||.|+.
T Consensus 144 ~~-L~~~~~~~~-lS~G--~~~kqrv~la~aL~~~-----~~p~~lV~tkpdll 188 (413)
T 1tq4_A 144 MK-FYEYDFFII-ISAT--RFKKNDIDIAKAISMM-----KKEFYFVRTKVDSD 188 (413)
T ss_dssp TT-GGGCSEEEE-EESS--CCCHHHHHHHHHHHHT-----TCEEEEEECCHHHH
T ss_pred cC-CCccCCeEE-eCCC--CccHHHHHHHHHHHhc-----CCCeEEEEecCccc
Confidence 11 123355554 3443 2344455555555542 26999999998763
No 214
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.57 E-value=1.2e-07 Score=83.44 Aligned_cols=120 Identities=18% Similarity=0.153 Sum_probs=67.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC------CcccccCC----------------------CC--CCCeeE----EEEee
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE------KAVTVSTF----------------------QS--EGPRPV----MVSRS 83 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~------~~~~~~~~----------------------~~--~t~~~~----~~~~~ 83 (243)
.+..|+++|.+|+||||+++.|.+. ++..+..- +. .+.++. .....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998863 22211110 00 111110 00001
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeC
Q 026113 84 RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 163 (243)
Q Consensus 84 ~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk 163 (243)
..+..+.||||||... .+......+........+|.+++|++... . ....... +.|.........+|+||
T Consensus 178 ~~~~D~vIIDT~G~~~---~~~~l~~~l~~i~~~~~~d~vllVvda~~--g-~~~~~~~----~~~~~~~~~i~gvVlnK 247 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHK---EEKGLLEEMKQIKEITNPDEIILVIDGTI--G-QQAGIQA----KAFKEAVGEIGSIIVTK 247 (432)
T ss_dssp TSSCSEEEEECCCSCS---SHHHHHHHHHHTTSSSCCSEEEEEEEGGG--G-GGHHHHH----HHHHTTSCSCEEEEEEC
T ss_pred hhCCCEEEEcCCCCcc---ccHHHHHHHHHHHHHhcCcceeEEeeccc--c-HHHHHHH----HHHhhcccCCeEEEEeC
Confidence 2566899999999853 24444555544333347899999955432 1 1222222 22332110238999999
Q ss_pred CCCC
Q 026113 164 AQLS 167 (243)
Q Consensus 164 ~D~~ 167 (243)
+|..
T Consensus 248 ~D~~ 251 (432)
T 2v3c_C 248 LDGS 251 (432)
T ss_dssp SSSC
T ss_pred CCCc
Confidence 9974
No 215
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.55 E-value=2.2e-07 Score=79.64 Aligned_cols=77 Identities=9% Similarity=0.095 Sum_probs=47.2
Q ss_pred eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCccc-------ChhHHHHHHHHHHHhcc--c
Q 026113 82 RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV-------DNLDKQITRAITDNFGE--Q 152 (243)
Q Consensus 82 ~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~-------~~~~~~~l~~l~~~~~~--~ 152 (243)
....+..+.+|||+|+...+. .+ ..|+ .++++||+|++++.... ...-..+..++...... -
T Consensus 188 ~~~~~~~l~iwDt~GQe~~r~---~w----~~yf--~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 188 FTFKDLHFKMFDVGGQRSERK---KW----IHCF--EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp EEETTEEEEEEEECCSGGGGG---GG----GGGC--TTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred EeeCCeeEEEEeCCCchhhhH---HH----HHHH--hcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 445678899999999843221 11 1122 58999999988764210 12233344444444331 1
Q ss_pred ccccEEEEEeCCCCC
Q 026113 153 IWKRALIVLTHAQLS 167 (243)
Q Consensus 153 ~~~~~ivV~tk~D~~ 167 (243)
...|+++|+||+|+.
T Consensus 259 ~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 259 TDTSIILFLNKKDLF 273 (353)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred cCCcEEEEEECcCch
Confidence 236899999999984
No 216
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.54 E-value=8.3e-07 Score=75.54 Aligned_cols=77 Identities=16% Similarity=0.202 Sum_probs=46.7
Q ss_pred EeeeCCeEEEEEeCCCCCCCCCCcHHHHHHH-HHHHhcCCCcEEEEEEeCCCc-------ccChhHHHHHHHHHHHhccc
Q 026113 81 SRSRAGFTLNIVDTPGLIEGGYVNYHAIQLI-KRFLLNKTIDVLLYVDRLDVY-------RVDNLDKQITRAITDNFGEQ 152 (243)
Q Consensus 81 ~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~-~~~~~~~~~~~il~v~~~d~~-------~~~~~~~~~l~~l~~~~~~~ 152 (243)
.....+..+.+|||+|+ +..+.+ ..|+ .+++++|+|+++... ...+.-..++.++.......
T Consensus 155 ~~~~~~v~l~iwDtaGQ--------e~~R~~w~~yy--~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 155 DFVVKDIPFHLIDVGGQ--------RSERKXWVSFF--SDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp EEESSSCEEEEEECCSC--------HHHHHHHHTTS--CSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred EEEeeeeeeccccCCCc--------ccccccHHHHh--ccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 34556788999999999 222222 2233 699999999887510 01122233344444443211
Q ss_pred --ccccEEEEEeCCCCC
Q 026113 153 --IWKRALIVLTHAQLS 167 (243)
Q Consensus 153 --~~~~~ivV~tk~D~~ 167 (243)
...|+++++||+|+.
T Consensus 225 ~~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLF 241 (340)
T ss_dssp GGTTSEEEEEEECHHHH
T ss_pred ccCCCeEEEEEECchhh
Confidence 236899999999984
No 217
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.42 E-value=6e-07 Score=78.83 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=67.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh------CCCcccccCCC--------------CCCCeeEEE---------------Ee
Q 026113 38 NTLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQ--------------SEGPRPVMV---------------SR 82 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~ll------g~~~~~~~~~~--------------~~t~~~~~~---------------~~ 82 (243)
++..|+++|.+|+||||++..|. |.++..+..-. ......... ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46789999999999999999887 44332211000 000000000 00
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEe
Q 026113 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162 (243)
Q Consensus 83 ~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~t 162 (243)
...+..+.++||||..... .+.....++........++.+++|++.. . .+......+.+.+.. .+..+|+|
T Consensus 176 ~~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~~pd~vlLVlDa~--~-gq~a~~~a~~f~~~~-----~~~gVIlT 246 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVLKPDDVILVIDAS--I-GQKAYDLASRFHQAS-----PIGSVIIT 246 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHHCCSEEEEEEEGG--G-GGGGHHHHHHHHHHC-----SSEEEEEE
T ss_pred HhcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhhCCcceEEEEeCc--c-chHHHHHHHHHhccc-----CCcEEEEe
Confidence 1135679999999974310 2333444444433223678999995443 2 233334444444432 46889999
Q ss_pred CCCCC
Q 026113 163 HAQLS 167 (243)
Q Consensus 163 k~D~~ 167 (243)
|+|..
T Consensus 247 KlD~~ 251 (433)
T 3kl4_A 247 KMDGT 251 (433)
T ss_dssp CGGGC
T ss_pred ccccc
Confidence 99863
No 218
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.16 E-value=7.6e-06 Score=72.07 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+-.-|.|+|++++|||+|+|.|+|.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 34567889999999999999999964
No 219
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.13 E-value=2e-05 Score=65.91 Aligned_cols=120 Identities=18% Similarity=0.129 Sum_probs=64.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh------CCCcccccCCCCCC--C----------eeEEEE-----------------ee
Q 026113 39 TLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQSEG--P----------RPVMVS-----------------RS 83 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~ll------g~~~~~~~~~~~~t--~----------~~~~~~-----------------~~ 83 (243)
+-.|+++|.+|+||||+++.|. |.++.....-.... . ...... ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4578899999999999998887 33332211110000 0 000000 01
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeC
Q 026113 84 RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 163 (243)
Q Consensus 84 ~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk 163 (243)
..+..+.++||||..... .++....+++.......+|.+++|++.. .. ......++.+.+ .. ....+|+||
T Consensus 178 ~~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~~~~~d~vllVvda~--~g-~~~~~~~~~~~~----~~-~i~gvVlnk 248 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAIKPDEVTLVIDAS--IG-QKAYDLASKFNQ----AS-KIGTIIITK 248 (297)
T ss_dssp HTTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHHCCSEEEEEEEGG--GG-GGHHHHHHHHHH----TC-TTEEEEEEC
T ss_pred hCCCCEEEEeCCCCcccc-cHHHHHHHHHHHHHHhcCCEEEEEeeCC--ch-HHHHHHHHHHHh----hC-CCCEEEEeC
Confidence 145679999999986410 2223333333222223788999995553 21 222333333322 21 238899999
Q ss_pred CCCC
Q 026113 164 AQLS 167 (243)
Q Consensus 164 ~D~~ 167 (243)
+|..
T Consensus 249 ~D~~ 252 (297)
T 1j8m_F 249 MDGT 252 (297)
T ss_dssp GGGC
T ss_pred CCCC
Confidence 9964
No 220
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.09 E-value=9.9e-06 Score=71.23 Aligned_cols=119 Identities=19% Similarity=0.184 Sum_probs=65.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh-------CCCcccccCCCCCCC--e----------eEEEE-----------------
Q 026113 38 NTLTILVMGKGGVGKSSTVNSII-------GEKAVTVSTFQSEGP--R----------PVMVS----------------- 81 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~ll-------g~~~~~~~~~~~~t~--~----------~~~~~----------------- 81 (243)
.+..|+++|.+|+||||++..|. |.++..+..-+.... . .....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999998887 655432221110000 0 00000
Q ss_pred eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEE
Q 026113 82 RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 161 (243)
Q Consensus 82 ~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~ 161 (243)
....+..+.||||||.... +......+........++.+++|++.. .. .......+. |.... ...-+|+
T Consensus 179 ~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~~~~p~~vllVvda~--~g-~~~~~~~~~----f~~~l-~i~gvVl 247 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHASINPVETLFVVDAM--TG-QDAANTAKA----FNEAL-PLTGVVL 247 (433)
T ss_dssp HHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHHHSCCSEEEEEEETT--BC-TTHHHHHHH----HHHHS-CCCCEEE
T ss_pred HHhCCCCEEEEECCCcccc---cHHHHHHHHHHHHhhcCcceeEEeecc--hh-HHHHHHHHH----HhccC-CCeEEEE
Confidence 0114668999999997532 233344444332224789999996654 22 222223332 32222 2255799
Q ss_pred eCCCCC
Q 026113 162 THAQLS 167 (243)
Q Consensus 162 tk~D~~ 167 (243)
||+|..
T Consensus 248 nK~D~~ 253 (433)
T 2xxa_A 248 TKVDGD 253 (433)
T ss_dssp ECTTSS
T ss_pred ecCCCC
Confidence 999864
No 221
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.98 E-value=2.3e-05 Score=66.47 Aligned_cols=119 Identities=20% Similarity=0.261 Sum_probs=63.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC------ccccc-CCCCCCC----------eeEEEEe------------------
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK------AVTVS-TFQSEGP----------RPVMVSR------------------ 82 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~------~~~~~-~~~~~t~----------~~~~~~~------------------ 82 (243)
++--++++|.+|+||||+++.|.+.- +.... +...... .......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 56789999999999999999988642 11110 0000000 0000000
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEe
Q 026113 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162 (243)
Q Consensus 83 ~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~t 162 (243)
...+..+.++||+|........-..+..+.+.+ .+|-.+++.+.. . .......++.+.+.. ...++++|
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral---~~de~llvLDa~--t-~~~~~~~~~~~~~~~-----~it~iilT 276 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVT---KPNLVIFVGDAL--A-GNAIVEQARQFNEAV-----KIDGIILT 276 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHH---CCSEEEEEEEGG--G-TTHHHHHHHHHHHHS-----CCCEEEEE
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHh---cCCCCEEEEecH--H-HHHHHHHHHHHHHhc-----CCCEEEEe
Confidence 012446788999998543322222222233333 578888885432 2 233333444444332 35689999
Q ss_pred CCCCC
Q 026113 163 HAQLS 167 (243)
Q Consensus 163 k~D~~ 167 (243)
|.|..
T Consensus 277 KlD~~ 281 (328)
T 3e70_C 277 KLDAD 281 (328)
T ss_dssp CGGGC
T ss_pred CcCCc
Confidence 99863
No 222
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.95 E-value=8.1e-05 Score=62.36 Aligned_cols=119 Identities=17% Similarity=0.201 Sum_probs=63.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC------ccccc-CCCCCC------------CeeEEEEe----------------
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK------AVTVS-TFQSEG------------PRPVMVSR---------------- 82 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~------~~~~~-~~~~~t------------~~~~~~~~---------------- 82 (243)
++-.|+++|++|+||||+++.|.+.- +.... +..... .-....+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999988431 11110 000000 00001000
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHH---HHHH---hcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc
Q 026113 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLI---KRFL---LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR 156 (243)
Q Consensus 83 ~~~~~~~~viDTPG~~~~~~~~~~~~~~~---~~~~---~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~ 156 (243)
...+..+.++||+|..... ......+ +..+ ....|+.++++.+.. . .......+..+.+.. ..
T Consensus 181 ~~~~~d~~llDt~G~~~~~---~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~--t-~~~~~~~~~~~~~~~-----~~ 249 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTK---HNLMEELKKVKRAIAKADPEEPKEVWLVLDAV--T-GQNGLEQAKKFHEAV-----GL 249 (304)
T ss_dssp HHHTCSEEEECCCCCCTTC---HHHHHHHHHHHHHHHHHCTTCCSEEEEEEETT--B-CTHHHHHHHHHHHHH-----CC
T ss_pred HhCCCCEEEecCCCCCCch---HHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHH--H-HHHHHHHHHHHHHHc-----CC
Confidence 0124457899999985432 2222222 2221 124688888885443 2 233444444454433 35
Q ss_pred EEEEEeCCCCC
Q 026113 157 ALIVLTHAQLS 167 (243)
Q Consensus 157 ~ivV~tk~D~~ 167 (243)
.++++||.|..
T Consensus 250 t~iivTh~d~~ 260 (304)
T 1rj9_A 250 TGVIVTKLDGT 260 (304)
T ss_dssp SEEEEECTTSS
T ss_pred cEEEEECCccc
Confidence 78999999864
No 223
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.91 E-value=5.4e-05 Score=67.29 Aligned_cols=119 Identities=17% Similarity=0.258 Sum_probs=64.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC------Ccccc-cCCCCC-------C---C--eeEEEEe----------------
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE------KAVTV-STFQSE-------G---P--RPVMVSR---------------- 82 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~------~~~~~-~~~~~~-------t---~--~~~~~~~---------------- 82 (243)
.+-.|+++|.+|+|||||++.|.|. .+... .+.... . . -......
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 3457899999999999999998853 21111 110000 0 0 0000000
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH---h---cCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhccccccc
Q 026113 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL---L---NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR 156 (243)
Q Consensus 83 ~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~---~---~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~ 156 (243)
...+..+.++||+|.... +......+.+.. . ...++-+|+|++.. ........++.+.+.++ .
T Consensus 372 ~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDat---tGq~al~~ak~f~~~~~-----i 440 (503)
T 2yhs_A 372 KARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS---TGQNAVSQAKLFHEAVG-----L 440 (503)
T ss_dssp HHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGG---GTHHHHHHHHHHHHHTC-----C
T ss_pred HhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCc---ccHHHHHHHHHHHhhcC-----C
Confidence 013557899999998533 223333333321 1 13477888884432 22333444555554432 4
Q ss_pred EEEEEeCCCCC
Q 026113 157 ALIVLTHAQLS 167 (243)
Q Consensus 157 ~ivV~tk~D~~ 167 (243)
..+|+||.|..
T Consensus 441 tgvIlTKLD~t 451 (503)
T 2yhs_A 441 TGITLTKLDGT 451 (503)
T ss_dssp SEEEEECGGGC
T ss_pred CEEEEEcCCCc
Confidence 67899999864
No 224
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.82 E-value=6e-06 Score=69.31 Aligned_cols=58 Identities=26% Similarity=0.338 Sum_probs=32.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC-------CCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~~viDTPG~~~~ 100 (243)
.-.++++|.+|+|||||+|.|+|......+... .+|...... ... ...++||||+...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~--~~~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI--HTS--GGLVADTPGFSSL 237 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEE--EET--TEEEESSCSCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHh--hcC--CEEEecCCCcccc
Confidence 348899999999999999999987543333222 122211111 111 2478999998653
No 225
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.75 E-value=1.7e-05 Score=66.31 Aligned_cols=119 Identities=15% Similarity=0.120 Sum_probs=62.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC-------CcccccCCC-CCCC-------------eeEEEE---------eeeCCe
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE-------KAVTVSTFQ-SEGP-------------RPVMVS---------RSRAGF 87 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~-------~~~~~~~~~-~~t~-------------~~~~~~---------~~~~~~ 87 (243)
++-.|+++|.+|+||||++..|.+. .+.....-+ ..+. ...... ....+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 4568999999999999999887632 221111100 0000 000000 012455
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 88 ~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.+.|+||||... ........+.+.+....++.+++|++... .. ..+..+.+.|.. ....-+|+||.|..
T Consensus 184 dlvIiDT~G~~~---~~~~~~~el~~~l~~~~~~~~~lVl~at~---~~---~~~~~~~~~~~~--l~~~giVltk~D~~ 252 (296)
T 2px0_A 184 DHVFVDTAGRNF---KDPQYIDELKETIPFESSIQSFLVLSATA---KY---EDMKHIVKRFSS--VPVNQYIFTKIDET 252 (296)
T ss_dssp SEEEEECCCCCT---TSHHHHHHHHHHSCCCTTEEEEEEEETTB---CH---HHHHHHTTTTSS--SCCCEEEEECTTTC
T ss_pred CEEEEeCCCCCh---hhHHHHHHHHHHHhhcCCCeEEEEEECCC---CH---HHHHHHHHHHhc--CCCCEEEEeCCCcc
Confidence 799999999853 23333444444433234677788854431 11 122233333431 13456788999964
No 226
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.66 E-value=3.6e-05 Score=64.44 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=33.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCCCCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIE 99 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~viDTPG~~~ 99 (243)
-.++++|++|+|||||+|.|+ ......+.... +|..... ....+ --.++||||+..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~--~~~~~-~g~v~d~pg~~~ 228 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRL--IPFGK-GSFVGDTPGFSK 228 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEE--EEETT-TEEEESSCCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEE--EEcCC-CcEEEECcCcCc
Confidence 478999999999999999999 54322222221 1211111 11111 246899999864
No 227
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.65 E-value=4.6e-05 Score=66.70 Aligned_cols=72 Identities=19% Similarity=0.121 Sum_probs=39.9
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (243)
Q Consensus 85 ~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 164 (243)
.+..+.||||||.... +......+......-.+|.+++|++.. .. ......++.+.+ .. ...-+|+||.
T Consensus 179 ~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~~pd~vlLVvDa~--tg-q~av~~a~~f~~----~l-~i~GVIlTKl 247 (425)
T 2ffh_A 179 EARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAM--TG-QEALSVARAFDE----KV-GVTGLVLTKL 247 (425)
T ss_dssp TTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGG--GT-THHHHHHHHHHH----HT-CCCEEEEESG
T ss_pred CCCCEEEEcCCCcccc---cHHHHHHHHHhhhccCCceEEEEEecc--ch-HHHHHHHHHHHh----cC-CceEEEEeCc
Confidence 4567999999997533 333333333322222688888885543 22 222233333332 22 3467899999
Q ss_pred CCC
Q 026113 165 QLS 167 (243)
Q Consensus 165 D~~ 167 (243)
|..
T Consensus 248 D~~ 250 (425)
T 2ffh_A 248 DGD 250 (425)
T ss_dssp GGC
T ss_pred CCc
Confidence 863
No 228
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.58 E-value=8.4e-05 Score=62.14 Aligned_cols=59 Identities=29% Similarity=0.324 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~viDTPG~~~~~ 101 (243)
-.++++|++|+|||||+|.|.|......+.... .+...... ... ..-.++||||+....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~--~~~-~~g~v~q~p~~~~~~ 235 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLL--KFD-FGGYVVDTPGFANLE 235 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEE--ECT-TSCEEESSCSSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEE--EcC-CCCEEEECcCCCccC
Confidence 468899999999999999999876433222211 11111111 111 124689999986443
No 229
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.56 E-value=6.1e-05 Score=65.46 Aligned_cols=78 Identities=9% Similarity=0.105 Sum_probs=47.3
Q ss_pred EeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcc-------cChhHHHHHHHHHHHhcc--
Q 026113 81 SRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-------VDNLDKQITRAITDNFGE-- 151 (243)
Q Consensus 81 ~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~-------~~~~~~~~l~~l~~~~~~-- 151 (243)
...+.+..+.+|||+|+...+.. + ..|+ .+++++|+|++++... ....-..+..++......
T Consensus 211 ~~~~~~v~l~iwDtaGQe~~r~~---w----~~yf--~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~ 281 (402)
T 1azs_C 211 KFQVDKVNFHMFDVGGQRDERRK---W----IQCF--NDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW 281 (402)
T ss_dssp EEEETTEEEEEEEECCSGGGGGG---G----GGGT--TTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT
T ss_pred EeecCCccceecccchhhhhhhh---h----Hhhc--cCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc
Confidence 34567889999999999533211 1 1122 5899999999886510 012222334444443321
Q ss_pred cccccEEEEEeCCCCC
Q 026113 152 QIWKRALIVLTHAQLS 167 (243)
Q Consensus 152 ~~~~~~ivV~tk~D~~ 167 (243)
....|+++|+||+|+.
T Consensus 282 ~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 282 LRTISVILFLNKQDLL 297 (402)
T ss_dssp CSSCCEEEEEECHHHH
T ss_pred CCCCeEEEEEEChhhh
Confidence 1236899999999984
No 230
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.51 E-value=7.4e-05 Score=63.92 Aligned_cols=25 Identities=36% Similarity=0.618 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKA 64 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~ 64 (243)
-.++++|.+|+|||||+|.|+|...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4789999999999999999999764
No 231
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.48 E-value=6.9e-05 Score=64.32 Aligned_cols=78 Identities=9% Similarity=0.075 Sum_probs=44.3
Q ss_pred EeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcc--c-----ChhHHHHHHHHHHHhcc--
Q 026113 81 SRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR--V-----DNLDKQITRAITDNFGE-- 151 (243)
Q Consensus 81 ~~~~~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~--~-----~~~~~~~l~~l~~~~~~-- 151 (243)
.....+..+.+|||+|+...+.. ...|+ .++++||+|++++... + ...-...+.++......
T Consensus 195 ~~~~~~~~l~i~Dt~Gq~~~r~~-------w~~~f--~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~ 265 (362)
T 1zcb_A 195 DFEIKNVPFKMVDVGGQRSERKR-------WFECF--DSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV 265 (362)
T ss_dssp EEEETTEEEEEEEECC--------------CTTSC--TTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred EeeeCCeEEEEEeccchhhhhhh-------HHHHh--CCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh
Confidence 34567889999999999432211 11122 5899999998886511 0 11222333344443321
Q ss_pred cccccEEEEEeCCCCC
Q 026113 152 QIWKRALIVLTHAQLS 167 (243)
Q Consensus 152 ~~~~~~ivV~tk~D~~ 167 (243)
-...|+|+|+||+|+.
T Consensus 266 ~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 266 FSNVSIILFLNKTDLL 281 (362)
T ss_dssp GTTSEEEEEEECHHHH
T ss_pred hCCCCEEEEEEChhhh
Confidence 1236899999999985
No 232
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.45 E-value=0.00058 Score=58.47 Aligned_cols=25 Identities=20% Similarity=0.500 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+-.++++|.+|+||||+++.|.|.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 3457899999999999999998864
No 233
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.45 E-value=0.00053 Score=57.30 Aligned_cols=25 Identities=20% Similarity=0.500 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
++-.++++|.+|+||||+++.|.|.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998854
No 234
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.42 E-value=9.3e-05 Score=62.04 Aligned_cols=24 Identities=25% Similarity=0.565 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg 61 (243)
.+-.|+++|.+|+||||++..|.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 345789999999999999988774
No 235
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.34 E-value=0.00065 Score=57.24 Aligned_cols=24 Identities=17% Similarity=0.452 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg 61 (243)
.+-.|+++|.+|+||||++..|.+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999887763
No 236
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.32 E-value=0.00022 Score=59.40 Aligned_cols=72 Identities=19% Similarity=0.113 Sum_probs=39.1
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (243)
Q Consensus 85 ~~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 164 (243)
.+..+.++||||.... +......+........++.+++|++.. . ... .+..+. .+.... ...-+|+||.
T Consensus 179 ~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~~~~~~~lv~~~~--~-~~~---~~~~~~-~~~~~~-~i~givlnk~ 247 (295)
T 1ls1_A 179 EARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAM--T-GQE---ALSVAR-AFDEKV-GVTGLVLTKL 247 (295)
T ss_dssp HTCCEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGG--G-THH---HHHHHH-HHHHHT-CCCEEEEECG
T ss_pred CCCCEEEEeCCCCccc---cHHHHHHHHHHhhhcCCCEEEEEEeCC--C-cHH---HHHHHH-HHhhcC-CCCEEEEECC
Confidence 3567999999987532 333333433332222678888885543 2 122 222222 222221 3466899999
Q ss_pred CCC
Q 026113 165 QLS 167 (243)
Q Consensus 165 D~~ 167 (243)
|..
T Consensus 248 d~~ 250 (295)
T 1ls1_A 248 DGD 250 (295)
T ss_dssp GGC
T ss_pred CCC
Confidence 864
No 237
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.26 E-value=0.00048 Score=53.53 Aligned_cols=68 Identities=10% Similarity=0.042 Sum_probs=41.6
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCC
Q 026113 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (243)
Q Consensus 86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 165 (243)
...+.|+|||+.. .......+. .+|.++++...+... ..-..+++.+.+........++.+|+|+.+
T Consensus 75 ~yD~viiD~~~~~-----~~~~~~~l~------~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~ 141 (206)
T 4dzz_A 75 DYDFAIVDGAGSL-----SVITSAAVM------VSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKI 141 (206)
T ss_dssp TSSEEEEECCSSS-----SHHHHHHHH------HCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBC
T ss_pred CCCEEEEECCCCC-----CHHHHHHHH------HCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 4579999999874 122222332 578999996665432 444555655554422122246699999998
Q ss_pred C
Q 026113 166 L 166 (243)
Q Consensus 166 ~ 166 (243)
.
T Consensus 142 ~ 142 (206)
T 4dzz_A 142 E 142 (206)
T ss_dssp T
T ss_pred C
Confidence 4
No 238
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.25 E-value=0.0023 Score=56.20 Aligned_cols=101 Identities=16% Similarity=0.153 Sum_probs=53.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh-------CC----------CcccccC-CCCCCCeeEEEE----ee-eCC--eEEEEEeC
Q 026113 40 LTILVMGKGGVGKSSTVNSII-------GE----------KAVTVST-FQSEGPRPVMVS----RS-RAG--FTLNIVDT 94 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~ll-------g~----------~~~~~~~-~~~~t~~~~~~~----~~-~~~--~~~~viDT 94 (243)
.-|.++|..++|||+|+|.|+ |. ..|.++. ..++|....... .. ..| ..+.++||
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 455599999999999999765 21 2222221 122333222211 11 123 46999999
Q ss_pred CCCCCCCCCcHH--HHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHH
Q 026113 95 PGLIEGGYVNYH--AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITD 147 (243)
Q Consensus 95 PG~~~~~~~~~~--~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~ 147 (243)
.|+++....... .+-.+.-. -.+++||=..- .+.+.+.+.|..+.+
T Consensus 148 EG~~d~~~~~~~d~~ifaLa~L----LSS~~IyN~~~---~i~~~~L~~L~~~te 195 (457)
T 4ido_A 148 QGTFDSQSTLRDSATVFALSTM----ISSIQVYNLSQ---NVQEDDLQHLQLFTE 195 (457)
T ss_dssp CCBTCTTCCHHHHHHHHHHHHH----HCSEEEEEEES---SCCHHHHHHHHHHHH
T ss_pred cCCCCcccCccccHHHHHHHHH----Hhhheeecccc---cCCHHHHHHHHHHHH
Confidence 999887654321 11111111 23455554221 245556666655544
No 239
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.25 E-value=1.7e-05 Score=62.21 Aligned_cols=26 Identities=27% Similarity=0.622 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
+.--|+++|++|+|||||++.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 44578999999999999999999653
No 240
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.23 E-value=0.00027 Score=60.42 Aligned_cols=73 Identities=7% Similarity=0.017 Sum_probs=42.6
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCC-------cccChhHHHHHHHHHHHhcc--ccccc
Q 026113 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDV-------YRVDNLDKQITRAITDNFGE--QIWKR 156 (243)
Q Consensus 86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~-------~~~~~~~~~~l~~l~~~~~~--~~~~~ 156 (243)
...+.+|||+|+...+..- ..| -.+++++|+|++++. ....+.-..+..++...... ....|
T Consensus 182 ~v~l~iwDtaGQe~~r~~~-------~~y--~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p 252 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKW-------IHL--FEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 252 (354)
T ss_dssp --EEEEEEECCSTTGGGGT-------GGG--CTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE
T ss_pred ceeeEEEECCCchhhhHHH-------HHH--hCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe
Confidence 4689999999995432221 111 258999999988751 01112223334444443321 12368
Q ss_pred EEEEEeCCCCC
Q 026113 157 ALIVLTHAQLS 167 (243)
Q Consensus 157 ~ivV~tk~D~~ 167 (243)
+++|+||+|+.
T Consensus 253 iiLvgNK~DL~ 263 (354)
T 2xtz_A 253 FMLFLNKFDIF 263 (354)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEEECcchh
Confidence 99999999984
No 241
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.13 E-value=0.0003 Score=55.24 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=27.3
Q ss_pred HHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 28 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
+.+.+.+...+...|.++|.+|+|||||++.|.+.-
T Consensus 11 ~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 11 VLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 334444333467899999999999999999988753
No 242
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.07 E-value=0.00054 Score=54.12 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
...+|+++|.+|+|||||++.++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999865
No 243
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.00 E-value=0.00033 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~ 63 (243)
+++++|++|+|||||++.|+|.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 244
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.93 E-value=0.00037 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~ 62 (243)
-.++++|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999875
No 245
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.93 E-value=0.00037 Score=54.45 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~ 62 (243)
-.++++|++|+|||||++.|++.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999874
No 246
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.81 E-value=0.00051 Score=53.90 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
--++++|++|||||||++.|.|..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 467899999999999999998764
No 247
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.74 E-value=0.0057 Score=45.37 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.-.++++|++|+|||+|++.+.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999998754
No 248
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.73 E-value=0.00078 Score=54.18 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|||||||++.|.|-.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 468999999999999999999875
No 249
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.72 E-value=0.00065 Score=52.33 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~ 63 (243)
-++++|++|||||||++.|++..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37899999999999999999754
No 250
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.71 E-value=0.00069 Score=52.63 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.--++++|++|||||||++.|.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999875
No 251
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.70 E-value=0.00069 Score=53.70 Aligned_cols=25 Identities=24% Similarity=0.579 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.-.++++|++|+|||||++.|.|..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468899999999999999998754
No 252
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.70 E-value=0.00071 Score=53.82 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
+.--++++|++|||||||++.|+|..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34578899999999999999999864
No 253
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.68 E-value=0.0012 Score=50.64 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.-.|+++|.+||||||+++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 457899999999999999999886
No 254
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.68 E-value=0.0022 Score=53.26 Aligned_cols=27 Identities=37% Similarity=0.368 Sum_probs=23.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
...+..|.++|.+|+|||||++.|.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999887643
No 255
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.66 E-value=0.00088 Score=53.43 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 367899999999999999999875
No 256
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.61 E-value=0.0011 Score=53.26 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|+|..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999985
No 257
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.59 E-value=0.0012 Score=53.37 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999875
No 258
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.58 E-value=0.0013 Score=53.16 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.=.++++|++|+|||||++.|.|..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999874
No 259
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.57 E-value=0.0011 Score=54.52 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|||||||++.|.|-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999999875
No 260
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.57 E-value=0.0012 Score=50.22 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.--++++|++|||||||++.+++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~~ 32 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFKP 32 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSCG
T ss_pred CEEEEEECCCCCCHHHHHHHHccC
Confidence 346789999999999999986643
No 261
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.57 E-value=0.0012 Score=54.07 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|||||||++.|.|-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999875
No 262
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.57 E-value=0.0012 Score=52.33 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~ 63 (243)
.++++|++|+|||||++.|.|..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999875
No 263
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.57 E-value=0.0012 Score=54.19 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.+.++|++|||||||++.|.|-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 467899999999999999999875
No 264
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.57 E-value=0.0013 Score=53.37 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|+|-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999999875
No 265
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.56 E-value=0.0012 Score=53.82 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999875
No 266
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.54 E-value=0.0014 Score=52.41 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|+|..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999875
No 267
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.52 E-value=0.0012 Score=51.59 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
+...|.++|.+|+|||||++.|.|.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998875
No 268
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.51 E-value=0.0012 Score=49.82 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
+.-.++++|+.|+|||||++.|.|.-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34468899999999999999999865
No 269
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.51 E-value=0.0011 Score=54.17 Aligned_cols=26 Identities=42% Similarity=0.496 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
+.-.++++|++|+|||||++.|+|.-
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 34578999999999999999998753
No 270
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.50 E-value=0.0014 Score=53.68 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|-.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 467899999999999999999875
No 271
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.50 E-value=0.0014 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~ 62 (243)
=.++++|++|+|||||++.|.|-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999999996
No 272
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.49 E-value=0.0015 Score=52.92 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 367899999999999999999975
No 273
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.49 E-value=0.0014 Score=52.83 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999875
No 274
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.48 E-value=0.0015 Score=53.27 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999999874
No 275
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.48 E-value=0.0014 Score=53.32 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|-.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 367899999999999999999975
No 276
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.47 E-value=0.0016 Score=53.32 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~ 62 (243)
=.++++|++|+|||||++.|.|-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999999996
No 277
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.46 E-value=0.042 Score=46.59 Aligned_cols=22 Identities=23% Similarity=0.441 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~ 62 (243)
.+++.|++|+|||++++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998854
No 278
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.45 E-value=0.0016 Score=53.47 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999875
No 279
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.44 E-value=0.0017 Score=53.59 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 367899999999999999999875
No 280
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.40 E-value=0.0018 Score=52.58 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999975
No 281
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.38 E-value=0.0013 Score=55.00 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|+|.-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 478999999999999999999874
No 282
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.38 E-value=0.0019 Score=52.88 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|-.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 467899999999999999999875
No 283
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.026 Score=49.39 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+--|++.|++|+|||+++.++.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999999999998865
No 284
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.37 E-value=0.002 Score=50.52 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
+..-|+++|++|+||||+++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34578999999999999999998764
No 285
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.37 E-value=0.0046 Score=49.75 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=25.2
Q ss_pred HHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHh
Q 026113 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 28 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~ll 60 (243)
...+.......+.+|+++|.+||||||+...|.
T Consensus 18 ~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 18 LKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp HHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhccCCCcEEEEECCCCCCHHHHHHHHH
Confidence 333333334478999999999999999999886
No 286
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.37 E-value=0.002 Score=49.95 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
...|+++|.+||||||+++.|.+.-
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999998754
No 287
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.36 E-value=0.003 Score=52.76 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
+.=.++++|++|+|||||++.|+|.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4457899999999999999999854
No 288
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.34 E-value=0.0024 Score=51.37 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh---CCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSII---GEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~ll---g~~ 63 (243)
++..|+++|.+||||||+++.|. |..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 46789999999999999999999 764
No 289
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.31 E-value=0.0014 Score=51.73 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~ 62 (243)
=.++++|++|+|||||++.|.|.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999987
No 290
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.31 E-value=0.0023 Score=52.38 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999875
No 291
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.30 E-value=0.0032 Score=48.95 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+...|+++|.+|+||||+++.|.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999998764
No 292
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.30 E-value=0.0017 Score=50.42 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~ 63 (243)
.++++|++|+|||||++.|.|.-
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999999998754
No 293
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.29 E-value=0.078 Score=42.34 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+..+++.|++|+|||+++.++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998753
No 294
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.28 E-value=0.0018 Score=49.67 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026113 41 TILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg 61 (243)
.++++|.+|+||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 295
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.27 E-value=0.025 Score=46.05 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+..+++.|++|+|||+++.++.+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4567999999999999999998754
No 296
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.26 E-value=0.0054 Score=51.57 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg 61 (243)
..++-|.++|.+||||||+++.|.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999988754
No 297
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.25 E-value=0.002 Score=48.56 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~ 62 (243)
..|+++|.+|+||||+++.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998764
No 298
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.25 E-value=0.0053 Score=47.73 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=26.4
Q ss_pred HHHHHhhhhc-CCCceEEEEEcCCCCcHHHHHHHHhC
Q 026113 26 LELLGKLKQE-NVNTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 26 ~~~~~~~~~~-~~~~~~IllvG~~g~GKSSlin~llg 61 (243)
.++.+.+.+. ...+..|.++|.+|+||||+++.|.+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3344444433 23567899999999999999998875
No 299
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.25 E-value=0.0024 Score=49.40 Aligned_cols=21 Identities=33% Similarity=0.688 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 026113 42 ILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 42 IllvG~~g~GKSSlin~llg~ 62 (243)
|+|+|++|+|||||++.|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999854
No 300
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.23 E-value=0.0081 Score=47.06 Aligned_cols=66 Identities=15% Similarity=0.061 Sum_probs=39.3
Q ss_pred CeEEEEEeCCCC-CCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCC
Q 026113 86 GFTLNIVDTPGL-IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (243)
Q Consensus 86 ~~~~~viDTPG~-~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 164 (243)
...+.|+|||+. ... .....+. .+|.++++...+.... ..-..+++.+.+.. ..++.+|+|+.
T Consensus 67 ~yD~viiD~p~~~~~~-----~~~~~l~------~aD~viiv~~~~~~~~-~~~~~~~~~l~~~~----~~~~~vv~N~~ 130 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE-----DLEALAD------GCDLLVIPSTPDALAL-DALMLTIETLQKLG----NNRFRILLTII 130 (209)
T ss_dssp GCSEEEEEEECCCSSS-----HHHHHHH------TSSEEEEEECSSHHHH-HHHHHHHHHHHHTC----SSSEEEEECSB
T ss_pred cCCEEEEeCCCCcCcH-----HHHHHHH------HCCEEEEEecCCchhH-HHHHHHHHHHHhcc----CCCEEEEEEec
Confidence 457999999987 432 2222332 7899999966553221 22234444444421 24688999999
Q ss_pred CCC
Q 026113 165 QLS 167 (243)
Q Consensus 165 D~~ 167 (243)
+..
T Consensus 131 ~~~ 133 (209)
T 3cwq_A 131 PPY 133 (209)
T ss_dssp CCT
T ss_pred CCc
Confidence 853
No 301
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.22 E-value=0.0019 Score=55.21 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~ 62 (243)
-.++++|++|+|||||+++++|.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 38999999999999999999875
No 302
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.21 E-value=0.0025 Score=49.66 Aligned_cols=25 Identities=28% Similarity=0.604 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
....|+++|.+||||||+++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999998743
No 303
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.20 E-value=0.0022 Score=54.83 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.-.++++|++|+|||||++.|++.-
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4589999999999999999999874
No 304
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.20 E-value=0.0026 Score=49.46 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg 61 (243)
....|+++|.+|+||||+++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 305
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.036 Score=48.35 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+--|++.|++|+|||+++.++.+.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHH
Confidence 4577999999999999999999865
No 306
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.18 E-value=0.0026 Score=52.75 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~ 63 (243)
.++++|++|+|||||++.|.|..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 67899999999999999999875
No 307
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.16 E-value=0.0062 Score=51.03 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+...|.++|.+|||||||++.|.|.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 45678999999999999999998874
No 308
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.16 E-value=0.0017 Score=51.70 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=15.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh-CCC
Q 026113 40 LTILVMGKGGVGKSSTVNSII-GEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~ll-g~~ 63 (243)
-.++++|++||||||+++.|. +..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 468999999999999999999 753
No 309
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.13 E-value=0.0024 Score=54.01 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
-.++++|++|+|||||++.|+|.-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999874
No 310
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.12 E-value=0.0014 Score=50.12 Aligned_cols=23 Identities=13% Similarity=0.356 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~ 63 (243)
.+.++|.+|+|||||++.|++.-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999764
No 311
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.11 E-value=0.008 Score=49.98 Aligned_cols=64 Identities=9% Similarity=0.086 Sum_probs=40.4
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccC-hhHHHHHHHHHHHhcccccccEEEEEeCCCC
Q 026113 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD-NLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (243)
Q Consensus 88 ~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~-~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 166 (243)
.+.+||| +.......+ .++ .++|++|+|++++....+ .....|+..+.. ...|+++|+||+|+
T Consensus 64 ~~~iwD~--qer~~~l~~-------~~~--~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK~DL 127 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTK-------PHV--ANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINKMDL 127 (301)
T ss_dssp SEEEEEE--CCCSCEETT-------TTE--ESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECCGGG
T ss_pred eEEEEEE--ccccceeec-------ccc--ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeHHHc
Confidence 7999999 433332222 111 489999999888643222 223445544433 13699999999998
Q ss_pred C
Q 026113 167 S 167 (243)
Q Consensus 167 ~ 167 (243)
.
T Consensus 128 ~ 128 (301)
T 1u0l_A 128 Y 128 (301)
T ss_dssp C
T ss_pred C
Confidence 6
No 312
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.08 E-value=0.0039 Score=47.09 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg 61 (243)
+..|++.|.+|+||||+++.|..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 35689999999999999999875
No 313
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.06 E-value=0.0032 Score=53.86 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.+.++|++|||||||++.|.|-.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 367899999999999999999875
No 314
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.06 E-value=0.003 Score=53.97 Aligned_cols=24 Identities=21% Similarity=0.553 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=-++++|++|||||||++.|.|-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 357899999999999999999975
No 315
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.043 Score=47.52 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+--|++.|++|+|||+++.++.+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999865
No 316
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.05 E-value=0.0073 Score=44.35 Aligned_cols=26 Identities=12% Similarity=0.254 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
..+..|++.|++|+|||+++.++...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999999998754
No 317
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.04 E-value=0.0033 Score=53.63 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|||||||++.|.|-.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357899999999999999999875
No 318
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.02 E-value=0.0033 Score=49.57 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg 61 (243)
+..|+++|.+|+||||+++.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 319
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.02 E-value=0.0028 Score=54.21 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.-+++++|.+|+|||||++.|.|.-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998753
No 320
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.01 E-value=0.0037 Score=50.21 Aligned_cols=25 Identities=28% Similarity=0.322 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
+...|.++|++|||||||++.|.+.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999988763
No 321
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.00 E-value=0.004 Score=47.03 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg 61 (243)
.-.|+++|.+|+||||+++.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998764
No 322
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.00 E-value=0.0036 Score=53.90 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKA 64 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~ 64 (243)
=.++++|++|||||||++.|.|-..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 3578999999999999999999753
No 323
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.99 E-value=0.0028 Score=55.32 Aligned_cols=25 Identities=40% Similarity=0.448 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
..-.++++|++|+|||||+++|++.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 3446899999999999999999875
No 324
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.98 E-value=0.0037 Score=53.47 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 467899999999999999999975
No 325
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.97 E-value=0.0031 Score=54.16 Aligned_cols=25 Identities=44% Similarity=0.543 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
..-.++++|++|+||||+++.|++.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999999875
No 326
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.97 E-value=0.0029 Score=49.79 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.=-++++|++|+|||||++.|++.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999874
No 327
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.96 E-value=0.0037 Score=53.41 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 357899999999999999999975
No 328
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.94 E-value=0.0033 Score=56.33 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
...++++|++||||||++++|++.-
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3459999999999999999999764
No 329
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.94 E-value=0.0035 Score=47.95 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~ 62 (243)
..++++|.+|+|||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46889999999999999999865
No 330
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.94 E-value=0.0045 Score=46.24 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 026113 40 LTILVMGKGGVGKSSTVNSI 59 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~l 59 (243)
..|+++|.+||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 331
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.93 E-value=0.061 Score=45.40 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
..+-.+++.|++|+|||++++.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998854
No 332
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.93 E-value=0.0054 Score=46.61 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.-.++++|++|+|||+|++++.+.-
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999988754
No 333
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.92 E-value=0.004 Score=53.52 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKA 64 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~ 64 (243)
=.++++|++|+|||||++.|.|-..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCC
Confidence 3578999999999999999999853
No 334
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.92 E-value=0.0055 Score=47.68 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.....|+++|.+|+||||+++.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999999876
No 335
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.91 E-value=0.0051 Score=47.80 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg 61 (243)
..|+++|.+||||||+++.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999976
No 336
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.91 E-value=0.0048 Score=46.62 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg 61 (243)
+..|+++|.+||||||+++.|..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999874
No 337
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.90 E-value=0.0042 Score=53.37 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|||||||++.|.|-.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 467899999999999999999875
No 338
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.90 E-value=0.0046 Score=46.30 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026113 41 TILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg 61 (243)
.|+++|.+||||||+++.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 339
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.88 E-value=0.0039 Score=48.38 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg 61 (243)
.+|+++|.+||||||+++.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 340
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.052 Score=47.38 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+--|++.|++|+|||+++.++.+.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999998864
No 341
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.85 E-value=0.0046 Score=49.31 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 026113 40 LTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~ll 60 (243)
=-++++|++|+|||||++.|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 467889999999999999888
No 342
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.85 E-value=0.012 Score=44.35 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=25.7
Q ss_pred HHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 25 l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
+..+...+.. ..+-.+++.|++|+|||+++..+...
T Consensus 31 ~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 31 IRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3444444433 24567899999999999999988754
No 343
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.83 E-value=0.0034 Score=53.44 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 367899999999999999999875
No 344
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.83 E-value=0.0061 Score=46.42 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~ll 60 (243)
....|+++|.+||||||+++.|.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999886
No 345
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.83 E-value=0.0058 Score=46.73 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~ll 60 (243)
.+..|+++|.+|+||||+++.|.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999875
No 346
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.81 E-value=0.011 Score=48.81 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg 61 (243)
.+.-|++.|.+||||||++..|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 568899999999999999999863
No 347
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.80 E-value=0.0039 Score=48.38 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg 61 (243)
+..|+++|.+||||||+++.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998853
No 348
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.78 E-value=0.35 Score=40.27 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~ 62 (243)
+-.|++.|++|+|||+++.++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 467999999999999999998754
No 349
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.78 E-value=0.0057 Score=47.39 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg 61 (243)
+.-.|+++|.+|+||||++..|.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345899999999999999998863
No 350
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.78 E-value=0.0064 Score=46.53 Aligned_cols=25 Identities=36% Similarity=0.601 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
+...|+++|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999988643
No 351
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.78 E-value=0.026 Score=48.22 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=18.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~ll 60 (243)
.+ .+++|++|+||||++++|+
T Consensus 24 g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EE-EEEECCTTSSHHHHHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHH
Confidence 45 5689999999999999987
No 352
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.075 Score=46.77 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+--|+|.|++|+|||+++.++.+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 5678999999999999999999865
No 353
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.75 E-value=0.0063 Score=46.36 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg 61 (243)
+..|++.|.+||||||+++.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998753
No 354
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.70 E-value=0.0052 Score=53.13 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.+.++|++|+|||||++.|.|-.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 367899999999999999999874
No 355
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.69 E-value=0.0077 Score=46.62 Aligned_cols=25 Identities=20% Similarity=0.464 Sum_probs=21.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHh
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~ll 60 (243)
...+..|+++|.+|+||||+++.|.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4467899999999999999998875
No 356
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.68 E-value=0.0057 Score=51.03 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.....|.++|.+|+|||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999998864
No 357
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.67 E-value=0.0073 Score=46.11 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~ll 60 (243)
.+..|++.|.+||||||+...|.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999998875
No 358
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.67 E-value=0.0072 Score=47.54 Aligned_cols=23 Identities=17% Similarity=0.543 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~ll 60 (243)
.+..|+++|.+||||||+++.|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999998875
No 359
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.66 E-value=0.0077 Score=48.66 Aligned_cols=26 Identities=23% Similarity=0.320 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh---CCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSII---GEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~ll---g~~ 63 (243)
....|.++|.+||||||+++.|. |..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 45689999999999999999998 653
No 360
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.66 E-value=0.0065 Score=47.54 Aligned_cols=21 Identities=38% Similarity=0.725 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 026113 40 LTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~ll 60 (243)
.+|+++|.+||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999884
No 361
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.65 E-value=0.006 Score=46.36 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026113 41 TILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg 61 (243)
-.+++|++|+||||++.+|.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999864
No 362
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.64 E-value=0.0034 Score=53.59 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|-.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 367899999999999999999975
No 363
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.64 E-value=0.0078 Score=46.37 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
++..|+++|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 5788999999999999999998754
No 364
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.61 E-value=0.0074 Score=45.94 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~ll 60 (243)
...|+++|.+|+||||++..|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999885
No 365
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.58 E-value=0.0078 Score=46.37 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026113 41 TILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg 61 (243)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998864
No 366
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.57 E-value=0.0071 Score=48.09 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+..-|++.|.+|+||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 35678999999999999999998875
No 367
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.57 E-value=0.0076 Score=47.17 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 026113 40 LTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~ll 60 (243)
.+|+++|.+||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999885
No 368
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.57 E-value=0.0079 Score=51.46 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=20.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHH
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSI 59 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~l 59 (243)
..+..||+|+|.+|+||||++..+
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHH
Confidence 346899999999999999998775
No 369
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.53 E-value=0.0087 Score=46.37 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg 61 (243)
++..|++.|.+||||||+++.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999998863
No 370
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.53 E-value=0.16 Score=41.51 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+-.+++.|++|+|||+++.++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4578999999999999999998754
No 371
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.51 E-value=0.0092 Score=46.05 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
++..|++.|.+||||||+++.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999988754
No 372
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.51 E-value=0.0089 Score=45.77 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~ll 60 (243)
++..|+++|.+||||||+++.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999998875
No 373
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.044 Score=47.91 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+--|++.|++|+|||+++.++.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 4678999999999999999998865
No 374
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.48 E-value=0.0082 Score=45.53 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg 61 (243)
+...|+++|.+|+||||+++.|.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998865
No 375
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.47 E-value=0.0082 Score=43.99 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+..|++.|++|+|||+++.++...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHh
Confidence 4567999999999999999987754
No 376
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.46 E-value=0.0064 Score=49.89 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 026113 42 ILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 42 IllvG~~g~GKSSlin~llg~ 62 (243)
++++|++|+|||+|++++.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999875
No 377
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.45 E-value=0.009 Score=46.48 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg 61 (243)
++..|++.|.+||||||+++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998863
No 378
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.45 E-value=0.0085 Score=47.40 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~ll 60 (243)
++..|+++|.+||||||+++.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999998876
No 379
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.45 E-value=0.015 Score=49.00 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~ 62 (243)
+-.++++|++|+|||||++.+.+.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999999999998865
No 380
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.43 E-value=0.0084 Score=45.67 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026113 41 TILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg 61 (243)
.|++.|.+|+||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 381
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.43 E-value=0.049 Score=45.00 Aligned_cols=69 Identities=16% Similarity=0.103 Sum_probs=37.6
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccE-EEEEeCC
Q 026113 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRA-LIVLTHA 164 (243)
Q Consensus 86 ~~~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~-ivV~tk~ 164 (243)
...+.|+|||+........ ..+ ..+|.+++|...+.... ..-..+++.+.+. +.+...++ -+|+|+.
T Consensus 156 ~yD~ViiD~p~~~~~~~~~----~~l------~~aD~viiv~~~~~~s~-~~~~~~~~~l~~~-~~~~~~~~~gvV~N~~ 223 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGGFA----APL------QHADQAVVVTANDFDSI-YAMNRIIAAVQAK-SKNYKVRLAGCVANRS 223 (307)
T ss_dssp SCSEEEEEECCSSCCGGGG----GGG------GTCSEEEEEECSSHHHH-HHHHHHHHHHHTT-TTTCCCEEEEEEEESC
T ss_pred cCCEEEEeCCCccchHHHH----HHH------HHCCEEEEEecCcHHHH-HHHHHHHHHHHHh-hhcCCCceEEEEEecC
Confidence 3578999998864321111 011 37899999966553221 2233445555443 22222343 4999999
Q ss_pred CC
Q 026113 165 QL 166 (243)
Q Consensus 165 D~ 166 (243)
+.
T Consensus 224 ~~ 225 (307)
T 3end_A 224 RA 225 (307)
T ss_dssp SC
T ss_pred Cc
Confidence 83
No 382
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.42 E-value=0.0069 Score=48.72 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~ 62 (243)
-++++|++|+|||+|++++.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999865
No 383
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.40 E-value=0.0087 Score=53.97 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|.|..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999864
No 384
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.40 E-value=0.0093 Score=50.27 Aligned_cols=20 Identities=25% Similarity=0.606 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 026113 42 ILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 42 IllvG~~g~GKSSlin~llg 61 (243)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876
No 385
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.36 E-value=0.0087 Score=47.12 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~ll 60 (243)
.+..|+++|.+||||||+++.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999998875
No 386
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.35 E-value=0.0096 Score=46.25 Aligned_cols=24 Identities=21% Similarity=0.255 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg 61 (243)
.+..|++.|.+|+||||+++.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999998863
No 387
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.33 E-value=0.016 Score=43.50 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=25.4
Q ss_pred HHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 25 l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
+..+.+.+.. ...-.+++.|++|+|||+++..+...
T Consensus 31 ~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 31 IRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3444443333 24567899999999999999887654
No 388
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.33 E-value=0.012 Score=46.17 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg 61 (243)
.+..|++.|.+||||||+++.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 389
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.32 E-value=0.0051 Score=51.59 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~ 63 (243)
-++++|..|||||||+|.|++..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46789999999999999999653
No 390
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.30 E-value=0.013 Score=44.73 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
+...|+++|.+|+||||+++.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999988643
No 391
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.30 E-value=0.013 Score=45.26 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~ll 60 (243)
.+..|++.|.+|+||||+++.|.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999998876
No 392
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.28 E-value=0.024 Score=48.77 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
..-.++++|++|+|||||++.|.+.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4558899999999999999998863
No 393
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.26 E-value=0.0067 Score=53.59 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
..-.++++|++|+|||||++.|+|..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45689999999999999999999764
No 394
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.25 E-value=0.014 Score=47.09 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg 61 (243)
..+..|+++|.+||||||+...|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999998764
No 395
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.25 E-value=0.0094 Score=54.23 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|+|.-
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 378999999999999999999875
No 396
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.25 E-value=0.011 Score=44.87 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~ll 60 (243)
....|+++|.+|+||||+++.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34679999999999999999886
No 397
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.23 E-value=0.01 Score=54.04 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|+|.-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999874
No 398
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.22 E-value=0.012 Score=43.94 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026113 41 TILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg 61 (243)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988753
No 399
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.21 E-value=0.0087 Score=46.96 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~ 62 (243)
--++++|++|+|||||++.+++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 45788999999999999998843
No 400
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.21 E-value=0.01 Score=44.78 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026113 41 TILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg 61 (243)
+|+++|.+|+||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999988753
No 401
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.21 E-value=0.011 Score=47.92 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026113 41 TILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg 61 (243)
-|+++|.+|+||||+...|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998863
No 402
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.19 E-value=0.0099 Score=53.57 Aligned_cols=24 Identities=38% Similarity=0.648 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=-+.++|++|+|||||++.|.|.-
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 357899999999999999999974
No 403
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.18 E-value=0.011 Score=46.21 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 026113 40 LTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~ll 60 (243)
.+|++.|.+||||||+++.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999998875
No 404
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.16 E-value=0.011 Score=43.78 Aligned_cols=20 Identities=40% Similarity=0.752 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 026113 41 TILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~ll 60 (243)
-.+++|++|+||||++.+|.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 34788999999999998875
No 405
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.13 E-value=0.009 Score=45.26 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=16.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~ll 60 (243)
++..|++.|.+||||||+++.|.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999875
No 406
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.13 E-value=0.022 Score=45.79 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~ 62 (243)
+..++++|++|+|||+++.++.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456999999999999999998754
No 407
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.12 E-value=0.12 Score=44.39 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+..++|.|++|+|||+++.++...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998643
No 408
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.07 E-value=0.013 Score=44.87 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg 61 (243)
+..|++.|.+|+||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999988753
No 409
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.07 E-value=0.015 Score=46.13 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~ll 60 (243)
.+..|+++|.+|+||||+++.|.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 56789999999999999998875
No 410
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.07 E-value=0.01 Score=48.53 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~ 63 (243)
-++++|++|+|||+|+++|.+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 39999999999999999998653
No 411
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.04 E-value=0.014 Score=46.72 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~ll 60 (243)
.++.|++.|.+|+||||+.+.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999999886
No 412
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.04 E-value=0.01 Score=50.40 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
+.-++.++|.+|+|||||++.|.|..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999999874
No 413
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.012 Score=53.75 Aligned_cols=25 Identities=24% Similarity=0.571 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEKA 64 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~~ 64 (243)
=.+.++|++|+|||||++.|.|...
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCC
Confidence 4689999999999999999998753
No 414
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.00 E-value=0.013 Score=53.57 Aligned_cols=24 Identities=25% Similarity=0.601 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.+.++|++|+|||||++.|.|.-
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 478999999999999999999875
No 415
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.00 E-value=0.03 Score=46.89 Aligned_cols=38 Identities=32% Similarity=0.347 Sum_probs=26.6
Q ss_pred HHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 25 l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
+...+............+++.|++|+|||+++..+...
T Consensus 41 l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 41 LNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp HHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34444443333345567999999999999999998643
No 416
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.00 E-value=0.64 Score=38.36 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=17.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~ 62 (243)
--+++.|++|+|||+++.++...
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHHHH
Confidence 33556666999999999998643
No 417
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.00 E-value=0.01 Score=52.61 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~ 62 (243)
-.++++|++|+|||||++.|.|-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 56789999999999999999864
No 418
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.99 E-value=0.0098 Score=54.29 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|+|.-
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 478999999999999999999875
No 419
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.99 E-value=0.0092 Score=54.42 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|+|.-
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 378999999999999999999875
No 420
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.98 E-value=0.041 Score=42.35 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~ 62 (243)
..+++.|++|+|||+|+.++.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999988754
No 421
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.98 E-value=0.027 Score=43.92 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~ 62 (243)
+--+++.|++|+|||+++..+...
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 447899999999999999988743
No 422
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.97 E-value=0.0088 Score=54.37 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=.++++|++|+|||||++.|+|.-
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 378999999999999999999875
No 423
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.95 E-value=0.016 Score=44.14 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~ll 60 (243)
+..|+++|.+|+||||+++.|.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999998875
No 424
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.94 E-value=0.011 Score=53.94 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~ 63 (243)
.++++|++|+|||||++.|+|.-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 78999999999999999999874
No 425
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.93 E-value=0.011 Score=48.82 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~ 62 (243)
--++++|++|+|||||++.|.+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 35788999999999999988754
No 426
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.90 E-value=0.017 Score=46.80 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg 61 (243)
+..|+++|.+||||||+++.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56799999999999999998763
No 427
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.88 E-value=0.017 Score=46.47 Aligned_cols=25 Identities=32% Similarity=0.322 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg 61 (243)
.+++.|++.|.+||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999988753
No 428
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.88 E-value=0.016 Score=44.10 Aligned_cols=21 Identities=24% Similarity=0.397 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026113 41 TILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg 61 (243)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988764
No 429
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.87 E-value=0.016 Score=43.46 Aligned_cols=20 Identities=20% Similarity=0.476 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 026113 41 TILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~ll 60 (243)
.|++.|.+|+||||+.+.|.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998875
No 430
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.85 E-value=0.017 Score=44.21 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026113 41 TILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg 61 (243)
-|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998763
No 431
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.84 E-value=0.014 Score=44.38 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 026113 41 TILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~ll 60 (243)
.|+++|.+|+||||+...|.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 59999999999999998875
No 432
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.83 E-value=0.018 Score=45.53 Aligned_cols=20 Identities=35% Similarity=0.606 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 026113 41 TILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~ll 60 (243)
.|++.|.+||||||+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999998875
No 433
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.80 E-value=0.039 Score=43.26 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
..-.+++.|++|+|||+++..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999988754
No 434
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.80 E-value=0.015 Score=45.61 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 026113 39 TLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~ll 60 (243)
...|+++|.+||||||+++.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999998874
No 435
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.78 E-value=0.012 Score=47.54 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg 61 (243)
.-.|+++|.+|+||||+++.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 436
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.77 E-value=0.02 Score=47.10 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 026113 38 NTLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~ll 60 (243)
.+..|+++|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999998886
No 437
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.75 E-value=0.016 Score=52.32 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
+...|+++|.+||||||+++.|.+.-
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 55789999999999999999988653
No 438
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.73 E-value=0.02 Score=47.25 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~ 62 (243)
-.+++.|++|+|||+++..+.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999988754
No 439
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.72 E-value=0.0074 Score=46.98 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~ 62 (243)
.|++.|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999998743
No 440
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.71 E-value=0.015 Score=45.36 Aligned_cols=23 Identities=17% Similarity=0.020 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg 61 (243)
.--++++|++|+|||||+..+++
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999986
No 441
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.70 E-value=0.019 Score=43.58 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~ 62 (243)
...+.++|.+|+|||||++.|+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999998753
No 442
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.70 E-value=0.02 Score=42.79 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 026113 40 LTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~ll 60 (243)
-.|++.|.+||||||+...|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 579999999999999998874
No 443
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.68 E-value=0.018 Score=51.89 Aligned_cols=24 Identities=29% Similarity=0.623 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCc
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKA 64 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~ 64 (243)
.+.++|++|+|||||++.|.|...
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999999753
No 444
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.68 E-value=0.026 Score=44.06 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+..|+++|.+|+||||+++.|.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999987653
No 445
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.67 E-value=0.015 Score=51.11 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
+.=++.++|.+|+|||||++.|.|..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44688999999999999999999875
No 446
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.66 E-value=0.023 Score=43.97 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg 61 (243)
.....|.++|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999988753
No 447
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.62 E-value=0.3 Score=42.71 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+-.|++.|++|+|||+++.++...
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998754
No 448
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.61 E-value=0.01 Score=59.02 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~ 63 (243)
+|.+||++|+|||||++.|++--
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCc
Confidence 89999999999999999999764
No 449
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.60 E-value=0.02 Score=51.62 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCc
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEKA 64 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~~ 64 (243)
.+.++|++|+|||||++.|.|...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 678999999999999999999753
No 450
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.58 E-value=0.039 Score=44.50 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+..+++.|++|+|||+++.++...
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 4578999999999999999998754
No 451
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.54 E-value=0.042 Score=42.25 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~ 62 (243)
.+++.|++|+|||+++..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988753
No 452
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.53 E-value=0.017 Score=45.69 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.--++++|++|+|||||+..+++.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 346789999999999999999874
No 453
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.50 E-value=0.021 Score=52.17 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~ 63 (243)
.++++|++|+|||||++.|.|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999975
No 454
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.45 E-value=0.03 Score=47.34 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~ 62 (243)
+.-|+|+|+||+|||+|...|...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998865
No 455
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.44 E-value=0.022 Score=44.52 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
....|+++|.||+|||+|+..|...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999998754
No 456
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.42 E-value=0.031 Score=46.37 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=26.9
Q ss_pred HHHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhC
Q 026113 24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 24 ~l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg 61 (243)
.+...+.........+..+++.|++|+|||+++..+..
T Consensus 23 ~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 23 KLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp HHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 34444444433333457899999999999999998864
No 457
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.38 E-value=0.026 Score=44.22 Aligned_cols=21 Identities=19% Similarity=0.498 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026113 41 TILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg 61 (243)
+|+++|++||||+|....|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999998887763
No 458
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.27 E-value=0.037 Score=46.74 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
..+-.+++.|++|+|||+|++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998864
No 459
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.21 E-value=0.03 Score=46.08 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg 61 (243)
..|+++|.+|+||||+++.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998874
No 460
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.19 E-value=0.027 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.648 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCc
Q 026113 42 ILVMGKGGVGKSSTVNSIIGEKA 64 (243)
Q Consensus 42 IllvG~~g~GKSSlin~llg~~~ 64 (243)
+.++|++|+|||||++.|.|...
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 68999999999999999999753
No 461
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.14 E-value=0.07 Score=45.05 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg 61 (243)
+-.+++.|++|+|||+++.++..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988774
No 462
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.09 E-value=0.074 Score=43.70 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.....+++.|++|+|||+++.++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999876643
No 463
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.05 E-value=0.031 Score=43.56 Aligned_cols=20 Identities=40% Similarity=0.752 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 026113 41 TILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~ll 60 (243)
-.+++|++|+||||++.+|.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 44778999999999998875
No 464
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.05 E-value=0.031 Score=44.45 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg 61 (243)
....|+++|.+|+||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999988764
No 465
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.01 E-value=0.04 Score=43.78 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg 61 (243)
....|++.|.+|+||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999988764
No 466
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.93 E-value=0.036 Score=48.98 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+..|+++|.+|+||||+++.|...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999998743
No 467
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.90 E-value=0.025 Score=46.19 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg 61 (243)
--++++|++|+|||||+..+++
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4678999999999999998885
No 468
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.88 E-value=0.028 Score=55.96 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
-.++++|++|+|||||++.|+|.-
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cEEEEEecCCCcHHHHHHHhcccc
Confidence 388999999999999999999874
No 469
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.88 E-value=0.078 Score=42.92 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
..+..+++.|++|+|||+++.++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 46688999999999999999988753
No 470
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.85 E-value=0.062 Score=44.57 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg 61 (243)
..+..|++.|++|+|||+++.++..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHHHHH
Confidence 3567899999999999999998875
No 471
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.85 E-value=0.061 Score=45.14 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~ 62 (243)
.+++.|++|+||||++..+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988764
No 472
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.81 E-value=0.039 Score=45.53 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+.-+++.|++|+|||+++.++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567788899999999999998743
No 473
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.80 E-value=0.04 Score=46.26 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~ 62 (243)
..|+++|.+|+||||+...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999888743
No 474
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.78 E-value=0.021 Score=54.85 Aligned_cols=23 Identities=43% Similarity=0.725 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 026113 41 TILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg~~ 63 (243)
.+.++|++|+|||||++.|+|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999874
No 475
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.77 E-value=0.043 Score=45.89 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~ 62 (243)
+.-|+++|+||+|||+|...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 346889999999999999998744
No 476
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.71 E-value=0.031 Score=55.57 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg~~ 63 (243)
=+++++|++|+|||||++.|+|.-
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999874
No 477
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.70 E-value=0.056 Score=42.38 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg 61 (243)
-.+++.|++|+|||+++.++..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999988877764
No 478
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.69 E-value=0.32 Score=45.82 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~~ 63 (243)
.+.-|+|.|++|+|||+|+.++.+.-
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998653
No 479
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=93.68 E-value=0.2 Score=42.72 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCCCC
Q 026113 106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (243)
Q Consensus 106 ~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 169 (243)
.+.+.++.+. ...|++++|+++.. .+..+...+.+.++ .+|+++|+||+|+.+.
T Consensus 58 ~f~~~l~~i~--~~~~~il~VvD~~d-----~~~~~~~~l~~~~~---~~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 58 DFLRILNGIG--KSDALVVKIVDIFD-----FNGSWLPGLHRFVG---NNKVLLVGNKADLIPK 111 (368)
T ss_dssp HHHHHHHHHH--HSCCEEEEEEETTS-----HHHHCCTTHHHHSS---SSCEEEEEECGGGSCT
T ss_pred HHHHHHHHHh--ccCcEEEEEEECCC-----CcccHHHHHHHHhC---CCcEEEEEEChhcCCc
Confidence 3444444333 47889999977743 23455556666655 3799999999999743
No 480
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.66 E-value=0.099 Score=45.89 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=25.4
Q ss_pred HHHHHHhhhhcCCCceEEEEEcCCCCcHHHHHHHHhC
Q 026113 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 25 l~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~llg 61 (243)
+...+..+......+-.+++.|++|+|||+++.++..
T Consensus 49 l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 49 CGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence 3334443333223456899999999999999988763
No 481
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.60 E-value=0.057 Score=42.66 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=19.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg 61 (243)
++--|+++|++||||+|....|..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445577899999999998887763
No 482
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.59 E-value=0.09 Score=44.14 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026113 41 TILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg 61 (243)
.+++.|++|+|||+|...+..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999988874
No 483
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.56 E-value=0.07 Score=44.48 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+..+++.|++|+|||+++.++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3567999999999999999998753
No 484
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.51 E-value=0.046 Score=42.11 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026113 41 TILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~llg 61 (243)
.|.+.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999988754
No 485
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.51 E-value=0.074 Score=44.54 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=23.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
+..+-.+++.|++|+|||++++.++..
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 347789999999999999999998854
No 486
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.49 E-value=0.01 Score=47.42 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.4
Q ss_pred EEEcCCCCcHHHHHHHHhCCC
Q 026113 43 LVMGKGGVGKSSTVNSIIGEK 63 (243)
Q Consensus 43 llvG~~g~GKSSlin~llg~~ 63 (243)
+++|++|+|||||+++|.|.-
T Consensus 31 ~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 31 TLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHSCCSHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhccc
Confidence 678999999999999998653
No 487
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=93.47 E-value=0.012 Score=50.81 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 026113 41 TILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 41 ~IllvG~~g~GKSSlin~ll 60 (243)
.++++|++|+|||||+++|.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999998874
No 488
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=93.46 E-value=2.4 Score=34.63 Aligned_cols=65 Identities=17% Similarity=0.248 Sum_probs=39.4
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCcEEEEEEeCCCcccChhHHHHHHHHHHHhcccccccEEEEEeCCCCC
Q 026113 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (243)
Q Consensus 88 ~~~viDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 167 (243)
.+.|||||..... .+. . .+ ...+|.+|+|+..+.... ..-...++.+.+. + ...+-+|+|+.+..
T Consensus 203 D~VIIDtpp~~~~--~da--~-~l-----~~~aD~vllVv~~~~~~~-~~~~~~~~~l~~~-g---~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 203 DLVLIDTPPILAV--TDA--A-IV-----GRHVGTTLMVARYAVNTL-KEVETSLSRFEQN-G---IPVKGVILNSIFRR 267 (286)
T ss_dssp SEEEEECCCTTTC--THH--H-HH-----TTTCSEEEEEEETTTSBH-HHHHHHHHHHHHT-T---CCCCEEEEEEECCC
T ss_pred CEEEEcCCCCcch--HHH--H-HH-----HHHCCeEEEEEeCCCCcH-HHHHHHHHHHHhC-C---CCEEEEEEcCcccc
Confidence 4899999998532 111 1 11 147899999977765332 2333455555443 2 14577899999853
No 489
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.43 E-value=0.042 Score=46.43 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026113 40 LTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 40 ~~IllvG~~g~GKSSlin~llg 61 (243)
.-|+++|.+|+||||+...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999988764
No 490
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.41 E-value=0.06 Score=44.91 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~ 62 (243)
+.-|+++|+||+|||+|...|...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 456889999999999999998743
No 491
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.39 E-value=0.43 Score=45.30 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
..-.++++|++|+|||+++..+...
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHH
Confidence 3456899999999999999998865
No 492
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.29 E-value=0.046 Score=45.18 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+-.+++.|++|+|||+++.++.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 4567999999999999999998854
No 493
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.28 E-value=0.056 Score=43.02 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg 61 (243)
+..|++.|..|+||||+++.|..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 56799999999999999998864
No 494
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=93.28 E-value=0.051 Score=46.25 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=21.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHh
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSII 60 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~ll 60 (243)
+....||+++|..++||||++..+-
T Consensus 6 ~~~~~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 6 GIHIRKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCceeEEEECCCCCcHHHHHHHHH
Confidence 4467899999999999999987754
No 495
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.25 E-value=0.039 Score=46.11 Aligned_cols=24 Identities=33% Similarity=0.619 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~ 62 (243)
..-++++|.+|+||||+++.+++.
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 457999999999999999999865
No 496
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.21 E-value=0.052 Score=48.51 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=22.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 026113 36 NVNTLTILVMGKGGVGKSSTVNSIIG 61 (243)
Q Consensus 36 ~~~~~~IllvG~~g~GKSSlin~llg 61 (243)
.+....|+++|.+||||||+.+.|..
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~ 417 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLS 417 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred cccceEEEecccCCCCHHHHHHHHHH
Confidence 34568999999999999999998763
No 497
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.17 E-value=0.092 Score=43.65 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
..-.+++.|++|+|||+++.++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999998754
No 498
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.17 E-value=0.13 Score=43.49 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 37 ~~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
..+-.+++.|++|+|||++++.+...
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998754
No 499
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.15 E-value=0.061 Score=46.76 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 38 ~~~~IllvG~~g~GKSSlin~llg~ 62 (243)
.+.-|+++|.+||||||+++.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4577999999999999999998753
No 500
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.15 E-value=0.051 Score=41.41 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 026113 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (243)
Q Consensus 39 ~~~IllvG~~g~GKSSlin~llg~ 62 (243)
..=+++.|.+|+||||+.-.+...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 356899999999999999888744
Done!