BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026114
(243 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FKN4|CRS2A_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-A,
chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1
Length = 246
Score = 354 bits (908), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 173/246 (70%), Positives = 199/246 (80%), Gaps = 3/246 (1%)
Query: 1 MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-ADNGGFKVEYTPWLIVGLGNP 58
M A S+P T P+ F Q + S R + ASLP +DN K EYTPWLIVGLGNP
Sbjct: 1 MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNP 60
Query: 59 GIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGE 118
G+KY+GTRHN+GFEMIDHIA+A I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGE
Sbjct: 61 GLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGE 120
Query: 119 SVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 177
SVGPLAA+YQ+PLRHIL IYD+M L NGVLRLQPKGGH HNGLK+V HL+GCR +PRL
Sbjct: 121 SVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRL 180
Query: 178 CIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQK 237
IGIGNPPG MDMKA+LLQKFSP+ER+Q+D LEQGVE V+TLV GF +ISRFN+GQK
Sbjct: 181 SIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQK 240
Query: 238 YKYHAV 243
YK+H V
Sbjct: 241 YKFHKV 246
>sp|Q9LF14|CRS2B_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-B,
chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1
Length = 240
Score = 334 bits (856), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 166/224 (74%), Positives = 189/224 (84%), Gaps = 2/224 (0%)
Query: 21 PQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQA 80
P R+ R+C S D+ FKVEYTPWLIVGLGNPG KYHGTRHNVGFEMID +A+
Sbjct: 18 PVFRKQRFRVCSSTSGGEDDR-FKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDVLARK 76
Query: 81 QRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHIL-IYDE 139
+ + MNTIQSKALIGIG+I +VPILLAKPQ YMNFSGESVG LA+HY+VPLRHIL IYDE
Sbjct: 77 EGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHILMIYDE 136
Query: 140 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFS 199
M+L NGVLRLQPKGG G+HNG+KSVM HLDG R FPRL IGIG PPG MDMKA+LLQKFS
Sbjct: 137 MALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFS 196
Query: 200 PIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 243
P+E++QI+ ALEQG EAV+TLVLNGF+Q ISRFN+ QKYK+H V
Sbjct: 197 PLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYKFHKV 240
>sp|Q5ZCL8|CRS2_ORYSJ Chloroplastic group IIB intron splicing facilitator CRS2,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os01g0132800 PE=2 SV=1
Length = 259
Score = 319 bits (817), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 154/215 (71%), Positives = 179/215 (83%), Gaps = 2/215 (0%)
Query: 30 LCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQ 89
+ V AS+P D EYTPWLI GLGNPG KYHGTRHNVGFEM+D IA+ + I MNTIQ
Sbjct: 46 IAVVASVP-DPAARPAEYTPWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQ 104
Query: 90 SKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILI-YDEMSLMNGVLR 148
SK+L+GIGSIGEVP+LL KPQ+Y+N+SGE++GPLAA+YQVPLRHIL+ YDEMSL NGVLR
Sbjct: 105 SKSLLGIGSIGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLR 164
Query: 149 LQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDA 208
LQ KGGHG HNGL++VM LD RE PRL IGIG+PPGKMD +A+LLQKFS ER QID
Sbjct: 165 LQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDT 224
Query: 209 ALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 243
ALEQGV+AVRTLVL GF +I RFN+ QKYK+H+V
Sbjct: 225 ALEQGVDAVRTLVLKGFSGSIERFNLVQKYKFHSV 259
>sp|Q9M5P4|CRS2_MAIZE Chloroplastic group IIB intron splicing facilitator CRS2,
chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1
Length = 256
Score = 315 bits (808), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 161/241 (66%), Positives = 188/241 (78%), Gaps = 14/241 (5%)
Query: 4 ALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYH 63
+L+AP I PR PF V +S+P D VEYTPWLI GLGNPG KY+
Sbjct: 29 SLTAPLHRIRRPR--PF----------TVVSSVP-DPAAGPVEYTPWLIAGLGNPGNKYY 75
Query: 64 GTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPL 123
GTRHNVGFEM+D IA + I MNTIQSK+L+GIGSIGEVP+L+ KPQ+YMN+SGE++GPL
Sbjct: 76 GTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPL 135
Query: 124 AAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIG 182
AA+YQVPLRHIL IYD+ SL NGVLRLQ KGGHG HNGL++V+ HLDG REFPRL IGIG
Sbjct: 136 AAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIG 195
Query: 183 NPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHA 242
+PPGKMD +A+LLQKFS ER QID ALEQGV+AVRTLVL GF + RFN+ QKYK+H
Sbjct: 196 SPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQKYKFHR 255
Query: 243 V 243
V
Sbjct: 256 V 256
>sp|Q6NLS8|PTHM_ARATH Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana
GN=At5g19830 PE=2 SV=1
Length = 219
Score = 235 bits (600), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 114/195 (58%), Positives = 148/195 (75%), Gaps = 1/195 (0%)
Query: 47 YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILL 106
+ PWL +GLGNPG KY GTRHN+GFEMID A++ I MN + KA++G G + ++P++L
Sbjct: 16 HRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVIL 75
Query: 107 AKPQAYMNFSGESVGPLAAHYQVPLRHILI-YDEMSLMNGVLRLQPKGGHGHHNGLKSVM 165
AKPQ YMN SGES GPLAA+Y++PL +L+ +D+M L GVLRLQ KGGHG HNGLKSVM
Sbjct: 76 AKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVM 135
Query: 166 NHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGF 225
NH G REF RL IGIG PPG+MD KA+LLQKFS RE++D AL +GV+A++ ++ F
Sbjct: 136 NHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDF 195
Query: 226 DQNISRFNMGQKYKY 240
++ FN+ QKYK+
Sbjct: 196 GESWRLFNVEQKYKH 210
>sp|Q8GW64|PTHC_ARATH Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana
GN=At1g18440 PE=2 SV=2
Length = 288
Score = 229 bits (584), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 104/186 (55%), Positives = 143/186 (76%), Gaps = 1/186 (0%)
Query: 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAK 108
PWLIVGLGNPG KY GTRHNVGFEM+D +A A+ I+MNT+ KAL G G IG +PI+LAK
Sbjct: 94 PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAK 153
Query: 109 PQAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 167
PQ +MN SGESVG + + Y++PL+ +L +YD++ L G LRL PKGGHG HNG++S+++
Sbjct: 154 PQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDR 213
Query: 168 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 227
L G R+FPRL IGIG PPGKMD ++L++F+ E+E++D + G+EA+R L+L GF++
Sbjct: 214 LKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNK 273
Query: 228 NISRFN 233
+ + N
Sbjct: 274 SATFVN 279
>sp|Q5N9Q7|PTHM_ORYSJ Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os01g0693900 PE=2 SV=1
Length = 250
Score = 220 bits (561), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 103/189 (54%), Positives = 143/189 (75%), Gaps = 1/189 (0%)
Query: 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAK 108
PWL VGLGNPG Y GTRHNVGFEMID IA+A+ I+++++Q KA++G G IG+ PI+LAK
Sbjct: 55 PWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAK 114
Query: 109 PQAYMNFSGESVGPLAAHYQVPLRHILI-YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 167
PQ +MN SGESVG L +++++PL +L+ YD++ L LRL PKGGHG HNG++S++NH
Sbjct: 115 PQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINH 174
Query: 168 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 227
L R+FPRL IGIG PPGKMD ++L+ F+ E+E++D A +G+EAVR + L GF++
Sbjct: 175 LKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNK 234
Query: 228 NISRFNMGQ 236
+ + N Q
Sbjct: 235 SATYVNTAQ 243
>sp|Q181A2|PTH_CLOD6 Peptidyl-tRNA hydrolase OS=Clostridium difficile (strain 630)
GN=pth PE=3 SV=1
Length = 186
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 122/185 (65%), Gaps = 2/185 (1%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+++VGLGNPG KY TRHNVGF++ID +A+ I++ I+ KALIG G +G +LL KP
Sbjct: 2 YVVVGLGNPGKKYEKTRHNVGFDVIDILAKEYNISVTKIKHKALIGEGRVGTEKVLLVKP 61
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHI-LIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
Q YMN SGE++ + +Y+V L +I ++YD++ L G +R++ KG G HNG+KS+ L
Sbjct: 62 QTYMNLSGETLIDIYKYYKVDLSNIVVVYDDIDLEVGKIRIRKKGSGGTHNGMKSITKCL 121
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
G +FPR+ +G+ P D+ ++L +F E + I+ ALE+ +A+ +++ D +
Sbjct: 122 -GSNDFPRVRVGVSKPEAGQDLADFVLSRFRKEESDNINEALEKAADAIDSIIRENIDMS 180
Query: 229 ISRFN 233
++++N
Sbjct: 181 MNKYN 185
>sp|Q47SW2|PTH_THEFY Peptidyl-tRNA hydrolase OS=Thermobifida fusca (strain YX) GN=pth
PE=3 SV=1
Length = 213
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 122/192 (63%), Gaps = 3/192 (1%)
Query: 37 PADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGI 96
P ++G V WL+VGLGNPG KY G RHNVGF ++D +A + ++ A +
Sbjct: 23 PGESGAV-VSGERWLVVGLGNPGPKYAGNRHNVGFMVVDELAAQRGERWRLHKAHAQVVE 81
Query: 97 GSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPL-RHILIYDEMSLMNGVLRLQPKGGH 155
+G+ P++LAKP +YMN SG V L+A Y+VP+ R I+++DE+ + L+L+ GG
Sbjct: 82 TRVGDAPVVLAKPASYMNLSGGPVAKLSAFYKVPVDRIIVVHDELDIPFARLKLKRGGGS 141
Query: 156 GHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVE 215
HNGL+S+ L G ++ R+ +GIG PPG+MD +++LQ FS ER+++D + + +
Sbjct: 142 AGHNGLRSITASL-GSPDYVRVRVGIGRPPGRMDAASFVLQDFSTAERKELDVHVARAAD 200
Query: 216 AVRTLVLNGFDQ 227
AV T+V +G ++
Sbjct: 201 AVETVVTSGLEK 212
>sp|B8G3X3|PTH_CHLAD Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 /
DSM 9485) GN=pth PE=3 SV=1
Length = 188
Score = 151 bits (382), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 78/186 (41%), Positives = 113/186 (60%), Gaps = 3/186 (1%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
WLIVGLGNPG +Y TRHN+GF ++ +A+ + ++K+ I G I + L KP
Sbjct: 2 WLIVGLGNPGERYARTRHNIGFRSVETLAERHGLTFRNQRAKSEIAEGIIRGQRVALVKP 61
Query: 110 QAYMNFSGESVGPLAAHYQV-PLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 167
Q YMN SG++V L Y++ P R +L IYD++ L LRL+ +G G HNG++S++
Sbjct: 62 QTYMNLSGQAVAALRQWYKIDPARELLVIYDDLDLPFAKLRLRERGSAGTHNGMRSIVGQ 121
Query: 168 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 227
L G EFPRL IGIG PPG+MD Y+L +F+P E + L + +AV +V G
Sbjct: 122 L-GTTEFPRLRIGIGQPPGQMDAADYVLSRFTPEEEAVLPEVLARVADAVEVVVSEGLTA 180
Query: 228 NISRFN 233
++R+N
Sbjct: 181 AMNRYN 186
>sp|A9KR32|PTH_CLOPH Peptidyl-tRNA hydrolase OS=Clostridium phytofermentans (strain ATCC
700394 / DSM 18823 / ISDg) GN=pth PE=3 SV=1
Length = 191
Score = 150 bits (380), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 116/185 (62%), Gaps = 2/185 (1%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
++I+GLGNP +Y TRHN+GF+ I +A I+++T + KA+ G G IG ++LAKP
Sbjct: 2 YIIIGLGNPTREYEATRHNIGFDAITRLADDNNISLDTKKHKAICGKGMIGGEKVILAKP 61
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
Q YMN SGESV L Y+V I+ IYD++SL G LR++ KG G HNG+K+++ HL
Sbjct: 62 QTYMNLSGESVRELIDFYKVTKEEIIVIYDDISLDVGQLRIRTKGSAGGHNGIKNIIAHL 121
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
G EF R+ IG+G+ P D+ Y+L +F E I ALE+ +A T++ +G
Sbjct: 122 -GSDEFCRIKIGVGDKPKNWDLADYVLARFPKEEEPAIREALEKVSKACETILRDGAKVA 180
Query: 229 ISRFN 233
++ FN
Sbjct: 181 MNLFN 185
>sp|Q10LI6|CRS2L_ORYSJ CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica
GN=Os03g0347800 PE=2 SV=1
Length = 186
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/113 (64%), Positives = 87/113 (76%), Gaps = 1/113 (0%)
Query: 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAK 108
PWL VGLGNPG KY TRHNVGF+MID AQ+Q I++ KAL G G + VP+LLAK
Sbjct: 60 PWLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPVLLAK 119
Query: 109 PQAYMNFSGESVGPLAAHYQVPLRHILI-YDEMSLMNGVLRLQPKGGHGHHNG 160
PQ YMN SGESVGPLAA+Y++PL +L+ +D+M L GVLRLQPKGG+G HNG
Sbjct: 120 PQTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGVLRLQPKGGYGRHNG 172
>sp|B9LE93|PTH_CHLSY Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC
29364 / DSM 637 / Y-400-fl) GN=pth PE=3 SV=1
Length = 188
Score = 148 bits (373), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 115/186 (61%), Gaps = 3/186 (1%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
WLIVGLGNPG +Y TRHN+GF +D +A+ + ++ + + G+I ++LAKP
Sbjct: 2 WLIVGLGNPGERYARTRHNIGFRSVDTLAERHGLTFRPQRANSQLAEGNIYGQRVVLAKP 61
Query: 110 QAYMNFSGESVGPLAAHYQV-PLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 167
Q YMN SG++V L Y++ P R +L IYD++ L LR++ +G G HNG++S++
Sbjct: 62 QTYMNLSGQAVVALCNWYKIDPARELLVIYDDLDLPFAKLRIRERGSAGTHNGMRSIVAQ 121
Query: 168 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 227
L G EFPRL +GIG PPGKMD Y+L +F+P E + L + +AV ++ G
Sbjct: 122 L-GTTEFPRLRVGIGQPPGKMDAADYVLGRFTPDEEAALPDLLGRIADAVEVILREGLTT 180
Query: 228 NISRFN 233
++R+N
Sbjct: 181 AMNRYN 186
>sp|A9WBS1|PTH_CHLAA Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC
29366 / DSM 635 / J-10-fl) GN=pth PE=3 SV=1
Length = 188
Score = 148 bits (373), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 115/186 (61%), Gaps = 3/186 (1%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
WLIVGLGNPG +Y TRHN+GF +D +A+ + ++ + + G+I ++LAKP
Sbjct: 2 WLIVGLGNPGERYARTRHNIGFRSVDTLAERHGLTFRPQRANSQLAEGNIYGQRVVLAKP 61
Query: 110 QAYMNFSGESVGPLAAHYQV-PLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 167
Q YMN SG++V L Y++ P R +L IYD++ L LR++ +G G HNG++S++
Sbjct: 62 QTYMNLSGQAVVALCNWYKIDPARELLVIYDDLDLPFAKLRIRERGSAGTHNGMRSIVAQ 121
Query: 168 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 227
L G EFPRL +GIG PPGKMD Y+L +F+P E + L + +AV ++ G
Sbjct: 122 L-GTTEFPRLRVGIGQPPGKMDAADYVLGRFTPDEEAALPDLLGRIADAVEVILREGLTT 180
Query: 228 NISRFN 233
++R+N
Sbjct: 181 AMNRYN 186
>sp|A6TJM7|PTH_ALKMQ Peptidyl-tRNA hydrolase OS=Alkaliphilus metalliredigens (strain
QYMF) GN=pth PE=3 SV=1
Length = 185
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 116/185 (62%), Gaps = 3/185 (1%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
++IVGLGNPG KY GTRHNVGF++ID +A I +N ++ KAL G IG ++LAKP
Sbjct: 2 YIIVGLGNPGKKYSGTRHNVGFDVIDLLAHRLGITVNKLKHKALYGEARIGGEKVILAKP 61
Query: 110 QAYMNFSGESVGPLAAHYQV-PLRHILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
Q +MN SGES+ + Y++ P I+IYD++ + G LR++ G G HNG+KS + L
Sbjct: 62 QTFMNLSGESIREMMQFYKIDPENLIVIYDDIDVKVGSLRIRQSGSAGTHNGMKSTIYQL 121
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
FPR+ IG+G P D+ Y+L F+ E + +LE+ V ++V++G D+
Sbjct: 122 Q-TDAFPRIRIGVGRPEFG-DLSNYVLGSFTKDEIPLMKESLERATLTVESIVIDGIDKA 179
Query: 229 ISRFN 233
++R+N
Sbjct: 180 MNRYN 184
>sp|Q97E97|PTH_CLOAB Peptidyl-tRNA hydrolase OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=pth
PE=3 SV=1
Length = 187
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 119/185 (64%), Gaps = 4/185 (2%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+LIVGLGNPG+KY TRHN+GF+ I++IA I+++ K L G G I ++L KP
Sbjct: 2 FLIVGLGNPGLKYEHTRHNMGFDAIENIAAKHNISIDKKGFKGLYGKGIIDGEKVILLKP 61
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHI-LIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
YMN SGESV A +Y++ +I +IYD++SL G +R++ KG G HNG+K+++ HL
Sbjct: 62 YTYMNLSGESVVEAANYYKINKENIVVIYDDISLDVGKIRIRTKGSAGGHNGIKNIVLHL 121
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
EFPR+ +G+G P ++ Y+L KFS ER++I+ L EAV +V++G
Sbjct: 122 S-SEEFPRVKVGVGEPT--ENLVNYVLGKFSQDERKKIEEVLNIVTEAVECMVVDGVQNA 178
Query: 229 ISRFN 233
+++FN
Sbjct: 179 MNKFN 183
>sp|Q9F8Q3|PTH_CARHZ Peptidyl-tRNA hydrolase OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=pth PE=3 SV=2
Length = 187
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 117/187 (62%), Gaps = 3/187 (1%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
++I GLGNPG +Y TRHN GF ++D +A+ I + + K+L+G G I V +LL KP
Sbjct: 2 FIIAGLGNPGQEYENTRHNAGFMVVDELAKKHGILITKRKFKSLVGEGEILGVKVLLLKP 61
Query: 110 QAYMNFSGESVGPLAAHYQVPL-RHILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
Q YMN SG +V + Y++PL R +++YD++ L G +RL+ KG G H G+ S+++ L
Sbjct: 62 QTYMNLSGTAVQEAVSFYKLPLSRLVVVYDDLDLPLGKIRLRLKGSAGGHRGMGSIISCL 121
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
G E PRL IGIG P D+K Y+LQ F+ ERE ++ L+ EA+ + GF++
Sbjct: 122 -GSEEIPRLKIGIGR-PAVGDVKDYVLQPFTGAEREILEPTLKLAAEAITVALTEGFNKA 179
Query: 229 ISRFNMG 235
++ FN G
Sbjct: 180 MTDFNRG 186
>sp|A0PXL3|PTH_CLONN Peptidyl-tRNA hydrolase OS=Clostridium novyi (strain NT) GN=pth
PE=3 SV=1
Length = 188
Score = 144 bits (364), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 117/185 (63%), Gaps = 3/185 (1%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+LIVGLGNPG +Y TRHNVGF++ID I++ I +N + K + G G+I ++L KP
Sbjct: 2 FLIVGLGNPGKEYEHTRHNVGFDIIDVISEKYNIDLNKKKFKGMYGDGTIANEKVILLKP 61
Query: 110 QAYMNFSGESVGPLAAHYQVPLRH-ILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
YMN SGES+ + Y++P + I+IYD++SL G +R++ KG G HNG+K+++ H
Sbjct: 62 LTYMNLSGESIKEVTDFYKIPKENVIVIYDDISLEVGRMRIREKGSAGGHNGIKNIIAHF 121
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
G FPR+ +G+G P + D+ +++L KF+ +RE + E +A ++ G +
Sbjct: 122 -GSDVFPRIKVGVGQPVQR-DLVSHVLGKFNKDDREILSKVFEAASDAAENIIEKGTAEA 179
Query: 229 ISRFN 233
+++FN
Sbjct: 180 MNKFN 184
>sp|A8F920|PTH_BACP2 Peptidyl-tRNA hydrolase OS=Bacillus pumilus (strain SAFR-032)
GN=pth PE=3 SV=1
Length = 188
Score = 144 bits (363), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 108/183 (59%), Gaps = 2/183 (1%)
Query: 52 IVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQA 111
VGLGNPG +Y TRHNVGF ID +++ I +N + G G + +LL KP
Sbjct: 4 FVGLGNPGKEYEKTRHNVGFMTIDELSKKWDIPLNQSKFHGQFGTGFVSGQKVLLVKPLT 63
Query: 112 YMNFSGESVGPLAAHYQVPLRHI-LIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDG 170
YMN SGE V PL +Y +PL H+ +IYD++ L G +RL+ KG G HNG+KS++ HL G
Sbjct: 64 YMNLSGECVRPLMDYYDIPLEHLKVIYDDLDLPTGRIRLRTKGSAGGHNGIKSLIQHL-G 122
Query: 171 CREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNIS 230
EF R IGIG P M + Y+L +FS E+ I +A++ VEA + F + ++
Sbjct: 123 SPEFDRFRIGIGRPQNGMKVVDYVLGRFSEEEQPDIASAIQASVEACEAALTKPFLEVMN 182
Query: 231 RFN 233
FN
Sbjct: 183 DFN 185
>sp|A4XIS3|PTH_CALS8 Peptidyl-tRNA hydrolase OS=Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903) GN=pth PE=3 SV=1
Length = 189
Score = 144 bits (363), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 116/185 (62%), Gaps = 4/185 (2%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
++I GLGNPG +Y TRHN GF ID++AQA ++ I+ K L G + +LL KP
Sbjct: 3 YIIAGLGNPGERYTFTRHNAGFLAIDYLAQAFNTKVDKIKFKGLTGSFEYADKKVLLLKP 62
Query: 110 QAYMNFSGESVGPLAAHYQV-PLRHILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
YMN SG+S+ Y+V P + I+IYD+++ GV++++ KG G HNG+KS++ L
Sbjct: 63 MTYMNSSGDSIVEAVNFYKVKPEKLIVIYDDIAFDVGVVKMRKKGSDGGHNGVKSIIQRL 122
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
G EFPR+ IGIG P K DM Y+L +F E+++I A+E+ + ++ L+ +G D+
Sbjct: 123 -GTEEFPRIRIGIGVP--KEDMVKYVLSEFEDYEKQKIFRAIEKAAQGIKILLESGIDRA 179
Query: 229 ISRFN 233
++ N
Sbjct: 180 MNYIN 184
>sp|Q8R757|PTH_THETN Peptidyl-tRNA hydrolase OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=pth PE=3
SV=1
Length = 185
Score = 144 bits (362), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 120/185 (64%), Gaps = 3/185 (1%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
++I GLGNPG +Y GTRHNVGF +ID +++ I ++ ++ K+L+G G ++L KP
Sbjct: 2 YIIAGLGNPGKEYEGTRHNVGFMVIDALSKKLGIEVSRLKFKSLMGEGHFKGEKVILLKP 61
Query: 110 QAYMNFSGESVGPLAAHYQVPLRH-ILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
Q +MN SGE++ Y++PL + I++YD+ L G +R++ KG G HNG+ S++ +L
Sbjct: 62 QTFMNLSGEALYDAVNFYKIPLENVIVVYDDKDLEVGKIRIRRKGSSGGHNGMNSII-YL 120
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
+FPR+ IGIG P D+ ++L +FS E++ ID A+E+ EAV ++ NG +
Sbjct: 121 LNSEDFPRVRIGIGKPEDG-DLVRHVLGRFSDEEKKVIDEAVERAAEAVIDIMENGIEHA 179
Query: 229 ISRFN 233
+SRFN
Sbjct: 180 MSRFN 184
>sp|B2TI10|PTH_CLOBB Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Eklund 17B
/ Type B) GN=pth PE=3 SV=1
Length = 191
Score = 144 bits (362), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 116/185 (62%), Gaps = 4/185 (2%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+LIVGLGNPG KY TRHN+GFE+ID+I+ I +N + + + G G I ++L KP
Sbjct: 2 FLIVGLGNPGSKYDNTRHNIGFEVIDNISNEYNIDINRQKFRGVYGEGFIANNKVILLKP 61
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
YMN SG+SV +A Y++ +I+ IYD++SL G LR++ KG G HNG+KS++ +L
Sbjct: 62 TTYMNLSGDSVREVANFYKISNENIIVIYDDISLDIGRLRIREKGSAGGHNGIKSIIANL 121
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
FPR+ +G+G P +D+ Y+L KFS E+E + ++E +V ++ +
Sbjct: 122 -STDVFPRIKVGVGQP--NIDLVNYVLGKFSKEEKEVLKESIEVATNSVEEIIKQDVNSA 178
Query: 229 ISRFN 233
+++FN
Sbjct: 179 MNKFN 183
>sp|B0K466|PTH_THEPX Peptidyl-tRNA hydrolase OS=Thermoanaerobacter sp. (strain X514)
GN=pth PE=3 SV=1
Length = 184
Score = 143 bits (361), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 120/185 (64%), Gaps = 4/185 (2%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
++I GLGNPG +Y GTRHNVGF +ID +A+ + + ++ K+L+G G+ I+L KP
Sbjct: 2 YVIAGLGNPGREYEGTRHNVGFMVIDELAKKLGMNVTKLKFKSLVGEGNFKGEKIILLKP 61
Query: 110 QAYMNFSGESVGPLAAHYQVPLRH-ILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
Q +MN SGE++ Y++PL + I+IYD+ L G +R++ KG G HNG+ S++ +L
Sbjct: 62 QTFMNSSGEALYDAVNFYKIPLENVIVIYDDKDLDLGKIRIRKKGSSGGHNGMNSII-YL 120
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
EFPR+ IGIG P + D+ +++L KF E++ ID A+ + +AV ++ NG +
Sbjct: 121 LNSEEFPRVRIGIGKP--QKDLVSHVLGKFEESEKKLIDEAVIKAADAVIDIIENGIEHA 178
Query: 229 ISRFN 233
+S+FN
Sbjct: 179 MSKFN 183
>sp|C4Z4L5|PTH_EUBE2 Peptidyl-tRNA hydrolase OS=Eubacterium eligens (strain ATCC 27750 /
VPI C15-48) GN=pth PE=3 SV=1
Length = 186
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 113/185 (61%), Gaps = 2/185 (1%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
++I GLGNPG +Y GTRHN GF +ID +A I+++T + K LIG G I ++L KP
Sbjct: 2 YIIAGLGNPGKEYMGTRHNAGFSVIDELADKYNISVDTAKHKGLIGKGVIAGQKVILVKP 61
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
YMN SGE + + +Y+ + L I+D++SL G LRL+ KG G HNG+KS++ HL
Sbjct: 62 MTYMNNSGECIREVMDYYKCDIDDFLVIFDDISLDVGKLRLRAKGSAGGHNGIKSIIAHL 121
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
G +F R+ G+G+ P D+ ++L KF E + A ++ EAV ++ +G +
Sbjct: 122 -GSDKFKRIKFGVGDKPKNWDLADWVLGKFPAEEYATLREANKKACEAVECILTDGIESG 180
Query: 229 ISRFN 233
++++N
Sbjct: 181 MNKYN 185
>sp|A8MK43|PTH_ALKOO Peptidyl-tRNA hydrolase OS=Alkaliphilus oremlandii (strain OhILAs)
GN=pth PE=3 SV=1
Length = 185
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 118/184 (64%), Gaps = 3/184 (1%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
+IVGLGNPG KY TRHN+GFE ID +A+ I + ++ KAL G G+IG +LL KPQ
Sbjct: 3 IIVGLGNPGKKYDATRHNIGFEAIDMLAKRNNIEVKKLKHKALCGEGTIGGNKVLLVKPQ 62
Query: 111 AYMNFSGESVGPLAAHYQVPLRHILI-YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 169
+MN SG+S+ + Y+V ++I++ YD++ + G LR++ KG G HNG+KS++ +L
Sbjct: 63 TFMNLSGQSLLDIVQFYKVDPKNIVVLYDDIDIPVGTLRIREKGSSGTHNGMKSII-YLL 121
Query: 170 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 229
+FPR+ IG+G P D+ Y+L +F E + LE+ +AV TLV +G ++
Sbjct: 122 QTDQFPRIRIGVGKPQFG-DLADYVLGRFPKEEIPTMLETLERASQAVETLVKDGIAVSM 180
Query: 230 SRFN 233
+R+N
Sbjct: 181 NRYN 184
>sp|B2UXS9|PTH_CLOBA Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Alaska E43
/ Type E3) GN=pth PE=3 SV=1
Length = 191
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 115/185 (62%), Gaps = 4/185 (2%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+LIVGLGNPG KY TRHN+GFE+ID+I+ I +N + K + G G I ++L KP
Sbjct: 2 FLIVGLGNPGSKYDNTRHNIGFEVIDNISNEYNIDINRQKFKGVYGEGFIANNKVILLKP 61
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
YMN SG+SV +A Y++ +I+ IYD++SL G LR++ KG G HNG+KS++ +L
Sbjct: 62 TTYMNLSGDSVREVANFYKISNENIIVIYDDISLDIGRLRIREKGSAGGHNGIKSIIANL 121
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
FPR+ +G+G P ++ Y+L KFS E+E + ++E +V ++ +
Sbjct: 122 -STDVFPRIKVGVGQPND--NLVDYVLGKFSKEEKEVLKESIEAATNSVEEIIKQDINSA 178
Query: 229 ISRFN 233
+++FN
Sbjct: 179 MNKFN 183
>sp|C4KZU9|PTH_EXISA Peptidyl-tRNA hydrolase OS=Exiguobacterium sp. (strain ATCC
BAA-1283 / AT1b) GN=pth PE=3 SV=1
Length = 185
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 112/183 (61%), Gaps = 2/183 (1%)
Query: 52 IVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQA 111
IVGLGNPG K+ TRHNVGF ID +A+ I++N + AL+G G I ++L KP
Sbjct: 4 IVGLGNPGKKFEMTRHNVGFLAIDRLAEKHGISLNEAKFNALMGTGRINGERVVLVKPLT 63
Query: 112 YMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDG 170
YMN SGE+V P+ +Y++ + +L IYD++ ++ G LR +PKG G HNG+KS++ HL G
Sbjct: 64 YMNLSGEAVRPILDYYKIEIDDLLVIYDDLDMVPGKLRFRPKGSAGGHNGIKSLIQHL-G 122
Query: 171 CREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNIS 230
EF RL +GIG PP + + ++L + E +++ L+ V A V + ++
Sbjct: 123 TAEFKRLKLGIGRPPHPIKVVDWVLMNYRKDELPELNETLDNAVTAATDFVDTDWLALMN 182
Query: 231 RFN 233
R+N
Sbjct: 183 RYN 185
>sp|B0KBG1|PTH_THEP3 Peptidyl-tRNA hydrolase OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=pth PE=3 SV=1
Length = 184
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 120/185 (64%), Gaps = 4/185 (2%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
++I GLGNPG +Y GTRHNVGF +ID +A+ + + ++ K+L+G G+ I+L KP
Sbjct: 2 YVIAGLGNPGREYEGTRHNVGFMVIDELAKKLGMNVTKLKFKSLVGEGNFKGEKIILLKP 61
Query: 110 QAYMNFSGESVGPLAAHYQVPLRH-ILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
Q ++N SGE++ Y++PL + I+IYD+ L G +R++ KG G HNG+ S++ +L
Sbjct: 62 QTFVNSSGEALYDAVNFYKIPLENVIVIYDDKDLDVGKIRIRKKGSSGGHNGMNSII-YL 120
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
EFPR+ IGIG P + D+ +++L KF E++ ID A+ + +AV ++ NG +
Sbjct: 121 LNSEEFPRVRIGIGKP--QKDLVSHVLGKFEESEKKLIDEAVIKAADAVIDIIENGIEHA 178
Query: 229 ISRFN 233
+S+FN
Sbjct: 179 MSKFN 183
>sp|Q5L3U7|PTH_GEOKA Peptidyl-tRNA hydrolase OS=Geobacillus kaustophilus (strain HTA426)
GN=pth PE=3 SV=1
Length = 186
Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 111/184 (60%), Gaps = 2/184 (1%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
L VGLGNPG +Y TRHNVGF +ID +A+ +++ T + + L G S+ + L KP
Sbjct: 3 LFVGLGNPGKEYEQTRHNVGFFVIDELAKRWNVSLKTAKFRGLFGTASVSGEKVALCKPL 62
Query: 111 AYMNFSGESVGPLAAHYQVPLRH-ILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 169
YMN SGE V PL +Y + + I+IYD++ L G +RL+ KG G HNG+KS+++HL
Sbjct: 63 TYMNLSGECVRPLMDYYDIAIDDVIVIYDDLDLPPGKIRLRLKGSSGGHNGVKSLIHHL- 121
Query: 170 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 229
G +F R+ IGIG P G + Y+L +F+ E+ +D A+ + +A V F Q +
Sbjct: 122 GTEQFKRIRIGIGRPAGGQPVTDYVLGRFTEEEKPAVDKAVLRAADACEQAVKAPFIQVM 181
Query: 230 SRFN 233
+ FN
Sbjct: 182 NDFN 185
>sp|A5US07|PTH_ROSS1 Peptidyl-tRNA hydrolase OS=Roseiflexus sp. (strain RS-1) GN=pth
PE=3 SV=1
Length = 217
Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 112/186 (60%), Gaps = 3/186 (1%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
WLIVGLGNPG Y TRHN+GF ++ +AQ R+ ++ A I G I + LA P
Sbjct: 2 WLIVGLGNPGDTYARTRHNIGFRVVSELAQRHRLEFTHKRAHARIAEGIIAGQRVALALP 61
Query: 110 QAYMNFSGESVGPLAAHYQV-PLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 167
Q YMN SG++V L Y++ P +L +YD++ L GVLRL+ +G G HNG++S++
Sbjct: 62 QTYMNLSGQAVVGLRQWYKIDPATELLVVYDDVDLPFGVLRLRERGSAGTHNGMRSIITL 121
Query: 168 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 227
L G + FPRL IGI PP D+ Y+L +F+P + Q+ +++ +A+ T+V G
Sbjct: 122 L-GSQVFPRLRIGIDRPPPAWDLADYVLGRFTPEQEAQLPDIMQKAADALETVVREGMAV 180
Query: 228 NISRFN 233
++R N
Sbjct: 181 AMNRIN 186
>sp|A5I7R5|PTH_CLOBH Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Hall /
ATCC 3502 / NCTC 13319 / Type A) GN=pth PE=3 SV=1
Length = 189
Score = 141 bits (355), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 116/185 (62%), Gaps = 4/185 (2%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+L+VGLGN G +Y TRHN+GF+++D IA+ I +N + K G G IG I+L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
YMN SGESV A Y++ +I+ IYD+MS+ G LR++ KG G HNG+K+++ HL
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRSKGSAGGHNGIKNIIQHL 121
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
+ FPR+ +GIG P ++ Y+L KFS ERE I+ L +A ++V +G +
Sbjct: 122 N-SDIFPRVRVGIGQPD--ENVVNYVLGKFSKDEREIIEKVLAMSAKACISIVEDGVTEA 178
Query: 229 ISRFN 233
++++N
Sbjct: 179 MNKYN 183
>sp|A7FPJ7|PTH_CLOB1 Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain ATCC 19397
/ Type A) GN=pth PE=3 SV=1
Length = 189
Score = 141 bits (355), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 116/185 (62%), Gaps = 4/185 (2%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+L+VGLGN G +Y TRHN+GF+++D IA+ I +N + K G G IG I+L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
YMN SGESV A Y++ +I+ IYD+MS+ G LR++ KG G HNG+K+++ HL
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRSKGSAGGHNGIKNIIQHL 121
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
+ FPR+ +GIG P ++ Y+L KFS ERE I+ L +A ++V +G +
Sbjct: 122 N-SDIFPRVRVGIGQPD--ENVVNYVLGKFSKDEREIIEKVLAMSAKACISIVEDGVTEA 178
Query: 229 ISRFN 233
++++N
Sbjct: 179 MNKYN 183
>sp|B1IGZ7|PTH_CLOBK Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Okra /
Type B1) GN=pth PE=3 SV=1
Length = 189
Score = 140 bits (354), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 116/185 (62%), Gaps = 4/185 (2%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+L+VGLGN G +Y TRHN+GF+++D IA+ I +N + K G G IG I+L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
YMN SGESV A Y++ +I+ IYD+MS+ G LR++ KG G HNG+K+++ HL
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHL 121
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
+ FPR+ +GIG P ++ Y+L KFS +RE ID L +A ++V +G +
Sbjct: 122 N-SDIFPRVRVGIGQPD--ENVVNYVLGKFSKDQREIIDKVLAMSAKACISIVEDGVTEA 178
Query: 229 ISRFN 233
++++N
Sbjct: 179 MNKYN 183
>sp|C1FNE6|PTH_CLOBJ Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Kyoto /
Type A2) GN=pth PE=3 SV=1
Length = 189
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 116/185 (62%), Gaps = 4/185 (2%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+L+VGLGN G +Y TRHN+GF+++D IA+ I +N + K G G IG I+L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
YMN SGESV A Y++ +I+ IYD+MS+ G LR++ KG G HNG+K+++ HL
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHL 121
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
+ FPR+ +GIG P ++ Y+L KFS ERE I+ L +A ++V +G +
Sbjct: 122 N-SDIFPRVRVGIGQPD--ENVVNYVLGKFSKDEREIIEKVLAMSAKACISIVEDGVTEA 178
Query: 229 ISRFN 233
++++N
Sbjct: 179 MNKYN 183
>sp|A7GJW3|PTH_BACCN Peptidyl-tRNA hydrolase OS=Bacillus cereus subsp. cytotoxis (strain
NVH 391-98) GN=pth PE=3 SV=1
Length = 186
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 111/184 (60%), Gaps = 2/184 (1%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
LIVGLGNPG +Y TRHN+GF ID +A+ I++N + K + G G + ++L KP
Sbjct: 3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGMFGAGFVNGEKVILLKPL 62
Query: 111 AYMNFSGESVGPLAAHYQVPLRH-ILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 169
YMN SGES+ PL +Y++ L I++YD++ L G LRL+ KG G HNG+KS + HL
Sbjct: 63 TYMNLSGESIRPLMDYYKIDLEDFIIMYDDLDLPVGKLRLRMKGSAGGHNGVKSTIAHL- 121
Query: 170 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 229
G +EF R+ +GI P M + Y+L +F+ E ++ A+E+ A + F Q +
Sbjct: 122 GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTAEEMVDVNHAIEKAANACEEWLNKSFLQVM 181
Query: 230 SRFN 233
+ FN
Sbjct: 182 NDFN 185
>sp|Q0RCD6|PTH_FRAAA Peptidyl-tRNA hydrolase OS=Frankia alni (strain ACN14a) GN=pth PE=3
SV=1
Length = 197
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 119/200 (59%), Gaps = 9/200 (4%)
Query: 34 ASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKAL 93
++P D+G PWL+VGLGNPG Y G RHN GF ++D +A+ + + +S+A
Sbjct: 2 TNVPTDDG-------PWLVVGLGNPGPGYAGNRHNAGFMVVDLLAERAGSRLKSHRSRAD 54
Query: 94 IGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQV-PLRHILIYDEMSLMNGVLRLQPK 152
+ + +LA+P ++MN SG V + Y++ P R I+++DE+ + G +RL+
Sbjct: 55 VAEVRLAGTRAILARPLSFMNLSGGPVSAVRTFYKIDPARVIVVHDELDIPFGSVRLKRG 114
Query: 153 GGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQ 212
GG HNGL+S+ + L G R++ R+ +GIG PPG+MD Y+L+ F+ ER ++ LE
Sbjct: 115 GGDNGHNGLRSISSAL-GTRDYLRVRVGIGRPPGRMDPADYVLRDFAAAERRELPLLLEH 173
Query: 213 GVEAVRTLVLNGFDQNISRF 232
++V L+ +G + +R+
Sbjct: 174 SADSVEMLITDGLEPTQNRY 193
>sp|B1I197|PTH_DESAP Peptidyl-tRNA hydrolase OS=Desulforudis audaxviator (strain MP104C)
GN=pth PE=3 SV=1
Length = 195
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 110/184 (59%), Gaps = 5/184 (2%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
LIVGLGNPG KY TRHN GF ++D +A A +N + +L+G G + V ++LAKPQ
Sbjct: 3 LIVGLGNPGAKYRFTRHNAGFMVVDRLAGAAGTTVNRRRCFSLVGEGRLNGVRVVLAKPQ 62
Query: 111 AYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 169
YMN SG +V L HY++ L +L I D++ L G +RL+PKGG G H GL S++ L
Sbjct: 63 TYMNLSGLAVSALCRHYRLELADLLVICDDLDLEFGRIRLRPKGGSGGHRGLASIIAAL- 121
Query: 170 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 229
G +FPR+ IGIG D A++L +F+P ++ ++ L A G D+ +
Sbjct: 122 GSSDFPRVRIGIGKAE---DASAHVLGEFAPEDQSGLEEILSTAALAAACACREGLDEAM 178
Query: 230 SRFN 233
SRFN
Sbjct: 179 SRFN 182
>sp|A7GJD4|PTH_CLOBL Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Langeland
/ NCTC 10281 / Type F) GN=pth PE=3 SV=1
Length = 189
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 116/185 (62%), Gaps = 4/185 (2%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+L+VGLGN G +Y TRHN+GF+++D IA+ I +N + K G G IG I+L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
YMN SGESV A Y++ +I+ IYD+MS+ G LR++ KG G HNG+K+++ HL
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHL 121
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
+ FPR+ +GIG P ++ Y+L KFS +RE I+ L +A ++V +G +
Sbjct: 122 N-SDIFPRVRVGIGQPD--ENVVNYVLGKFSKDQREIIEKVLAMSAKACISIVEDGVTEA 178
Query: 229 ISRFN 233
++++N
Sbjct: 179 MNKYN 183
>sp|P37470|PTH_BACSU Peptidyl-tRNA hydrolase OS=Bacillus subtilis (strain 168) GN=spoVC
PE=3 SV=1
Length = 188
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 108/184 (58%), Gaps = 2/184 (1%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
+I GLGNPG Y TRHNVGF +ID +A+ I +N + L G G + +LL KP
Sbjct: 3 VIAGLGNPGKNYENTRHNVGFMVIDQLAKEWNIELNQNKFNGLYGTGFVSGKKVLLVKPL 62
Query: 111 AYMNFSGESVGPLAAHYQVPLRHI-LIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 169
YMN SGE + PL +Y V + +IYD++ L G +RL+ KG G HNG+KS++ HL
Sbjct: 63 TYMNLSGECLRPLMDYYDVDNEDLTVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHL- 121
Query: 170 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 229
G EF R+ IGIG P M + Y+L F+ E +I+ A+++ V+A + F + +
Sbjct: 122 GTSEFDRIRIGIGRPVNGMKVVDYVLGSFTKEEAPEIEEAVDKSVKACEASLSKPFLEVM 181
Query: 230 SRFN 233
+ FN
Sbjct: 182 NEFN 185
>sp|B1KTE2|PTH_CLOBM Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Loch Maree
/ Type A3) GN=pth PE=3 SV=1
Length = 189
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 116/185 (62%), Gaps = 4/185 (2%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+L+VGLGN G +Y TRHN+GF+++D +A+ I +N + K G G IG I+L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIVAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
YMN SGESV A Y++ +I+ IYD+MS+ G LR++ KG G HNG+K+++ HL
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHL 121
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
+ FPR+ +GIG P ++ Y+L KFS +RE I+ L +A ++V +G +
Sbjct: 122 N-SDIFPRVRVGIGQPD--ENVVNYVLGKFSKDQREVIEKVLAMSAKACISIVEDGVTEA 178
Query: 229 ISRFN 233
++++N
Sbjct: 179 MNKYN 183
>sp|C3KW96|PTH_CLOB6 Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain 657 / Type
Ba4) GN=pth PE=3 SV=1
Length = 189
Score = 138 bits (347), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 116/185 (62%), Gaps = 4/185 (2%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
+L+VGLGN G +Y TRHN+GF+++D IA+ I +N + K G G IG I+L KP
Sbjct: 2 YLVVGLGNIGKEYKQTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
YMN SGESV A Y++ +I+ IYD+MS+ G LR++ KG G HNG+K+++ HL
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHL 121
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
+ FPR+ +GIG P ++ Y+L KFS +RE I+ L +A ++V +G +
Sbjct: 122 N-SDIFPRVRVGIGQPD--ENVVNYVLGKFSKDQREIIEKVLAMSAKACISIVEDGVTEA 178
Query: 229 ISRFN 233
++++N
Sbjct: 179 MNKYN 183
>sp|Q8XHJ8|PTH_CLOPE Peptidyl-tRNA hydrolase OS=Clostridium perfringens (strain 13 /
Type A) GN=pth PE=3 SV=1
Length = 188
Score = 137 bits (346), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 118/184 (64%), Gaps = 4/184 (2%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
LIVGLGNPG +Y TRHN+GF++ID++A I +N + K + G G I ++L KP
Sbjct: 3 LIVGLGNPGKQYEQTRHNIGFDVIDYMANKYNIDVNREKFKGICGEGFIENKKVILLKPL 62
Query: 111 AYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 169
YMN SGES+ LA Y++ I+ +YD++SL G LR++ KG G HNG+KS++ +L
Sbjct: 63 TYMNLSGESIRELANFYKLEDDEIIVVYDDISLDIGRLRIREKGSAGGHNGIKSIIQNLG 122
Query: 170 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 229
G + FPR+ +G+G P K ++ ++L KFS +RE I+ + +A+ +V N +++
Sbjct: 123 GDK-FPRVKVGVGQP--KDNLVNHVLGKFSKEDREHIEKVIPVVSDAIVEIVKNDAKESM 179
Query: 230 SRFN 233
++FN
Sbjct: 180 NKFN 183
>sp|Q0TMG7|PTH_CLOP1 Peptidyl-tRNA hydrolase OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=pth PE=3 SV=1
Length = 188
Score = 137 bits (346), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 118/184 (64%), Gaps = 4/184 (2%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
LIVGLGNPG +Y TRHN+GF++ID++A I +N + K + G G I ++L KP
Sbjct: 3 LIVGLGNPGKQYEQTRHNIGFDVIDYMANKYNIDVNREKFKGICGEGFIENKKVILLKPL 62
Query: 111 AYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 169
YMN SGES+ LA Y++ I+ +YD++SL G LR++ KG G HNG+KS++ +L
Sbjct: 63 TYMNLSGESIRELANFYKLEDDEIIVVYDDISLDIGRLRIREKGSAGGHNGIKSIIQNLG 122
Query: 170 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 229
G + FPR+ +G+G P K ++ ++L KFS +RE I+ + +A+ +V N +++
Sbjct: 123 GDK-FPRVKVGVGQP--KDNLVNHVLGKFSKEDREHIEKVIPVVSDAIVEIVKNDAKESM 179
Query: 230 SRFN 233
++FN
Sbjct: 180 NKFN 183
>sp|B9MPK0|PTH_CALBD Peptidyl-tRNA hydrolase OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=pth PE=3 SV=1
Length = 189
Score = 137 bits (346), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 113/185 (61%), Gaps = 4/185 (2%)
Query: 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
++I GLGNPG +Y TRHN GF ID++AQ ++ I+ K L+G +LL KP
Sbjct: 3 YIITGLGNPGERYTFTRHNAGFLAIDYLAQFFNTKVDKIKFKGLVGSFEYAGKKVLLLKP 62
Query: 110 QAYMNFSGESVGPLAAHYQV-PLRHILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
YMN SGES+ Y++ P + I+IYD+++ GV++++ KG G HNG+KS++ L
Sbjct: 63 MTYMNASGESIIEAVNFYKIKPEKLIVIYDDIAFDVGVVKMRKKGSDGGHNGIKSIIQCL 122
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
G EFPR+ IGIG P K DM Y+L +F E+E+I A+E+ ++ L+ + D+
Sbjct: 123 -GTEEFPRIRIGIGVP--KYDMVKYVLSEFEDGEKEKIFRAIEKASNGIKILLESDIDRA 179
Query: 229 ISRFN 233
++ N
Sbjct: 180 MNYIN 184
>sp|A4IJC9|PTH_GEOTN Peptidyl-tRNA hydrolase OS=Geobacillus thermodenitrificans (strain
NG80-2) GN=pth PE=3 SV=1
Length = 186
Score = 137 bits (345), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 109/184 (59%), Gaps = 2/184 (1%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
L VGLGNPG +Y TRHN+GF +ID +A+ +++ T + + L G S+ + L KP
Sbjct: 3 LFVGLGNPGKEYEQTRHNIGFFVIDELAKRWNVSLKTAKFRGLFGTASVFGEKVALCKPL 62
Query: 111 AYMNFSGESVGPLAAHYQVPLRH-ILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 169
YMN SGE V PL Y + + I+IYD++ L G +RL+ KGG G HNG+KS+++HL
Sbjct: 63 TYMNLSGECVCPLIDFYDIAVDDVIIIYDDLDLPPGKIRLRLKGGSGGHNGVKSIIHHL- 121
Query: 170 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 229
G +F R+ IGIG P + Y+L +F+ E+ + A+ + +A V F Q +
Sbjct: 122 GTEQFKRIRIGIGRPTNGQPVADYVLSRFTEEEKPAVMEAVLRAADACEQAVTTPFIQVM 181
Query: 230 SRFN 233
+ FN
Sbjct: 182 NDFN 185
>sp|Q9KGJ3|PTH_BACHD Peptidyl-tRNA hydrolase OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=pth PE=3
SV=1
Length = 185
Score = 137 bits (345), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 109/184 (59%), Gaps = 2/184 (1%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
LIVGLGNPG KY GTRHNVGF+++D +A+ I + ++ L G G I I L KPQ
Sbjct: 3 LIVGLGNPGAKYDGTRHNVGFDVVDAVARRLNIEIKQSKANGLYGEGRIDGEKIFLLKPQ 62
Query: 111 AYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 169
+MN SGESV P +Y + + +L IYD++ L G +RL+ KG G HNG+KS++ HL
Sbjct: 63 TFMNRSGESVRPFLEYYNMEVEDLLVIYDDLDLPVGKIRLRQKGSAGGHNGMKSLIAHL- 121
Query: 170 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 229
G +F R+ +G+ P + ++L ++ P E++ I A++ EA F + +
Sbjct: 122 GTSDFKRIRVGVDRPAPGETVVQHVLGRYRPEEKDAISEAIDLSAEAAEAFTKKPFLEVM 181
Query: 230 SRFN 233
+ FN
Sbjct: 182 NTFN 185
>sp|Q1B425|PTH_MYCSS Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain MCS) GN=pth
PE=3 SV=1
Length = 192
Score = 137 bits (345), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 112/191 (58%), Gaps = 17/191 (8%)
Query: 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIA-------QAQRIAMNTIQSKALIGIGSIGE 101
P L+VGLGNPG Y TRHNVGF + D +A +A R +S A I G +
Sbjct: 4 PLLVVGLGNPGPNYAKTRHNVGFVVADLLAGRIGSGFKAHR------KSGADIATGRLAG 57
Query: 102 VPILLAKPQAYMNFSGESVGPLAAHYQV-PLRHILIYDEMSLMNGVLRLQPKGGHGHHNG 160
++LAKP+ YMN SG +VGPLA Y V P I+I+DE+ + G +RL+ GG HNG
Sbjct: 58 RAVVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLKFGGGVAGHNG 117
Query: 161 LKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTL 220
LKSV L G ++F R+ +G+G PPG+ D Y+L+ F+ +ER ++ EQ +A L
Sbjct: 118 LKSVAAAL-GTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTICEQAADATELL 176
Query: 221 VLNGFD--QNI 229
+ G + QN+
Sbjct: 177 IAQGLEPAQNL 187
>sp|A1UL23|PTH_MYCSK Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain KMS) GN=pth
PE=3 SV=1
Length = 192
Score = 137 bits (345), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 112/191 (58%), Gaps = 17/191 (8%)
Query: 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIA-------QAQRIAMNTIQSKALIGIGSIGE 101
P L+VGLGNPG Y TRHNVGF + D +A +A R +S A I G +
Sbjct: 4 PLLVVGLGNPGPNYAKTRHNVGFVVADLLAGRIGSGFKAHR------KSGADIATGRLAG 57
Query: 102 VPILLAKPQAYMNFSGESVGPLAAHYQV-PLRHILIYDEMSLMNGVLRLQPKGGHGHHNG 160
++LAKP+ YMN SG +VGPLA Y V P I+I+DE+ + G +RL+ GG HNG
Sbjct: 58 RAVVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLKFGGGVAGHNG 117
Query: 161 LKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTL 220
LKSV L G ++F R+ +G+G PPG+ D Y+L+ F+ +ER ++ EQ +A L
Sbjct: 118 LKSVAAAL-GTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTICEQAADATELL 176
Query: 221 VLNGFD--QNI 229
+ G + QN+
Sbjct: 177 IAQGLEPAQNL 187
>sp|A3Q5H1|PTH_MYCSJ Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain JLS) GN=pth
PE=3 SV=1
Length = 192
Score = 137 bits (345), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 112/191 (58%), Gaps = 17/191 (8%)
Query: 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIA-------QAQRIAMNTIQSKALIGIGSIGE 101
P L+VGLGNPG Y TRHNVGF + D +A +A R +S A I G +
Sbjct: 4 PLLVVGLGNPGPNYAKTRHNVGFVVADLLAGRIGSGFKAHR------KSGADIATGRLAG 57
Query: 102 VPILLAKPQAYMNFSGESVGPLAAHYQV-PLRHILIYDEMSLMNGVLRLQPKGGHGHHNG 160
++LAKP+ YMN SG +VGPLA Y V P I+I+DE+ + G +RL+ GG HNG
Sbjct: 58 RAVVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLKFGGGVAGHNG 117
Query: 161 LKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTL 220
LKSV L G ++F R+ +G+G PPG+ D Y+L+ F+ +ER ++ EQ +A L
Sbjct: 118 LKSVAAAL-GTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTICEQAADATELL 176
Query: 221 VLNGFD--QNI 229
+ G + QN+
Sbjct: 177 IAQGLEPAQNL 187
>sp|Q6HPW6|PTH_BACHK Peptidyl-tRNA hydrolase OS=Bacillus thuringiensis subsp. konkukian
(strain 97-27) GN=pth PE=3 SV=1
Length = 186
Score = 137 bits (344), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 113/184 (61%), Gaps = 2/184 (1%)
Query: 51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
LIVGLGNPG +Y TRHN+GF ID +A+ I++N + K L G G + ++L KP
Sbjct: 3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPL 62
Query: 111 AYMNFSGESVGPLAAHYQVPLRH-ILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 169
YMN SGES+ PL +Y++ + +++YD++ + G LRL+ KG G HNG+KS ++HL
Sbjct: 63 TYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL- 121
Query: 170 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 229
G +EF R+ +GI P M + Y+L +F+ E ++ ++E+ +A + F Q +
Sbjct: 122 GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIM 181
Query: 230 SRFN 233
+ FN
Sbjct: 182 NTFN 185
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,600,266
Number of Sequences: 539616
Number of extensions: 4256328
Number of successful extensions: 10330
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7787
Number of HSP's gapped (non-prelim): 750
length of query: 243
length of database: 191,569,459
effective HSP length: 114
effective length of query: 129
effective length of database: 130,053,235
effective search space: 16776867315
effective search space used: 16776867315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)