BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026118
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 23/228 (10%)
Query: 18 DGNGVLYTATGDGWIKRMHPNGTW-----EDWHQVGSQSLLG----LTTTKENNVIIVCD 68
DG + Y G++ + + W E+ + L G ++ +NN + + D
Sbjct: 39 DGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98
Query: 69 SQQGLLKVSEEG--VTVLVSQFNGSQLRFANDV-IEASDGSLYFTVSSTKFTPAEYYLDL 125
L V EG T L + +G ++ V ++ G +YFT ST + +
Sbjct: 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158
Query: 126 VSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSG 185
+ + G L+KYDPST +T+L+L L+ G +S D F++V E + VK++L+
Sbjct: 159 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK 218
Query: 186 RTDREIFIDNLPGGPDNVNLARDGSFWISII---------KMDPKGIQ 224
+ E+ + +P P N+ DG FW+S ++DPKGI+
Sbjct: 219 KGTAEVLV-KIP-NPGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIK 264
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 23/228 (10%)
Query: 18 DGNGVLYTATGDGWIKRMHPNGTW-----EDWHQVGSQSLLG----LTTTKENNVIIVCD 68
DG + Y G++ + + W E+ + L G ++ +NN + + D
Sbjct: 30 DGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 89
Query: 69 SQQGLLKVSEEG--VTVLVSQFNGSQLRFANDV-IEASDGSLYFTVSSTKFTPAEYYLDL 125
L V EG T L + +G ++ V ++ G +YFT ST + +
Sbjct: 90 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 149
Query: 126 VSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSG 185
+ + G L+KYDPST +T+L+L L+ G +S D F++V E + VK++L+
Sbjct: 150 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK 209
Query: 186 RTDREIFIDNLPGGPDNVNLARDGSFWISII---------KMDPKGIQ 224
+ E+ + +P P N+ DG FW+S ++DPKGI+
Sbjct: 210 KGTAEVLV-KIP-NPGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIK 255
>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
Length = 322
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 14/177 (7%)
Query: 60 ENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDV-IEASDGSLYFTVSSTKF 116
+NN + D L V EG T L + +G ++ V ++ G +YFT ST +
Sbjct: 90 QNNQXYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLY 149
Query: 117 TPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRC 176
+ + G L KYDPST +T+L+ L+ G +S D F++V E +
Sbjct: 150 DDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAEVSADSSFVLVAEFLSHQI 209
Query: 177 VKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII---------KMDPKGIQ 224
VK++L+ + E+ + +P P N+ DG FW+S ++DPKGI+
Sbjct: 210 VKYWLEGPKKGTAEVLV-KIP-NPGNIKRNADGHFWVSSSEELDGNXHGRVDPKGIK 264
>pdb|3DR2|A Chain A, Structural And Functional Analyses Of Xc5397 From
Xanthomonas Campestris: A Gluconolactonase Important In
Glucose Secondary Metabolic Pathways
pdb|3DR2|B Chain B, Structural And Functional Analyses Of Xc5397 From
Xanthomonas Campestris: A Gluconolactonase Important In
Glucose Secondary Metabolic Pathways
Length = 305
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 18/143 (12%)
Query: 83 VLVSQFNGSQLRFANDVIEASDGSLYFT------VSSTKFTPAEYYLDLVSGEPHGVLLK 136
+LV ++ G +L ND+I A DG+++FT ++ PA+ L H + +
Sbjct: 120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA------HHSVYR 173
Query: 137 YDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK-----FRCVKHFLKVSGRTDREI 191
P + + D L NG+A S DE+ L V ++ + + DR
Sbjct: 174 LPPDGSPLQRMAD-LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRH 232
Query: 192 FIDNLPGGPDNVNLARDGSFWIS 214
F G PD + R G W S
Sbjct: 233 FASVPDGLPDGFCVDRGGWLWSS 255
>pdb|2IAQ|A Chain A, Crystal Structure Of Squid Ganglion Dfpase S271a Mutant
Length = 312
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 76/171 (44%), Gaps = 13/171 (7%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 73 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 132
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE--DERF--LV 167
+ + PA+Y + E G + + + Q V F NG+A+ D R L+
Sbjct: 133 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLI 189
Query: 168 VCESWKFRCVKHFLKVSGRTDREIFIDNLP----GGPDNVNLARDGSFWIS 214
V E+ + + +K + + + ++P GG D ++ D + ++
Sbjct: 190 VAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 240
>pdb|2IAO|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E37q Mutant
Length = 312
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 76/171 (44%), Gaps = 13/171 (7%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 73 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 132
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE--DERF--LV 167
+ + PA+Y + E G + + + Q V F NG+A+ D R L+
Sbjct: 133 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLI 189
Query: 168 VCESWKFRCVKHFLKVSGRTDREIFIDNLP----GGPDNVNLARDGSFWIS 214
V E+ + + +K + + + ++P GG D ++ D + ++
Sbjct: 190 VAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 240
>pdb|2IAP|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E21q Mutant
Length = 312
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 76/171 (44%), Gaps = 13/171 (7%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 73 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 132
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE--DERF--LV 167
+ + PA+Y + E G + + + Q V F NG+A+ D R L+
Sbjct: 133 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLI 189
Query: 168 VCESWKFRCVKHFLKVSGRTDREIFIDNLP----GGPDNVNLARDGSFWIS 214
V E+ + + +K + + + ++P GG D ++ D + ++
Sbjct: 190 VAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 240
>pdb|2IAV|A Chain A, Crystal Structure Of Squid Ganglion Dfpase H287a Mutant
Length = 312
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 76/171 (44%), Gaps = 13/171 (7%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 73 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 132
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE--DERF--LV 167
+ + PA+Y + E G + + + Q V F NG+A+ D R L+
Sbjct: 133 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLI 189
Query: 168 VCESWKFRCVKHFLKVSGRTDREIFIDNLP----GGPDNVNLARDGSFWIS 214
V E+ + + +K + + + ++P GG D ++ D + ++
Sbjct: 190 VAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 240
>pdb|1E1A|A Chain A, Crystal Structure Of Dfpase From Loligo Vulgaris
pdb|1PJX|A Chain A, 0.85 Angstrom Structure Of Squid Ganglion Dfpase
pdb|2GVV|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase) In
Complex With Dicyclopentylphosphoroamidate (Dcppa)
pdb|2GVW|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase)
Holoenzyme (Rt)
pdb|3BYC|A Chain A, Joint Neutron And X-Ray Structure Of Diisopropyl
Fluorophosphatase. Deuterium Occupancies Are 1-Q, Where
Q Is Occupancy Of H
pdb|3KGG|A Chain A, X-Ray Structure Of Perdeuterated Diisopropyl
Fluorophosphata (Dfpase): Perdeuteration Of Proteins For
Neutron Diffractio
pdb|3O4P|A Chain A, Dfpase At 0.85 Angstrom Resolution (H Atoms Included)
Length = 314
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 76/171 (44%), Gaps = 13/171 (7%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 75 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 134
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE--DERF--LV 167
+ + PA+Y + E G + + + Q V F NG+A+ D R L+
Sbjct: 135 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLI 191
Query: 168 VCESWKFRCVKHFLKVSGRTDREIFIDNLP----GGPDNVNLARDGSFWIS 214
V E+ + + +K + + + ++P GG D ++ D + ++
Sbjct: 192 VAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 242
>pdb|2IAR|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244h Mutant
Length = 312
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 76/171 (44%), Gaps = 13/171 (7%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 73 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 132
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE--DERF--LV 167
+ + PA+Y + E G + + + Q V F NG+A+ D R L+
Sbjct: 133 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLI 189
Query: 168 VCESWKFRCVKHFLKVSGRTDREIFIDNLP----GGPDNVNLARDGSFWIS 214
V E+ + + +K + + + ++P GG D ++ D + ++
Sbjct: 190 VAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 240
>pdb|2IAX|A Chain A, Crystal Structure Of Squid Ganglion Dfpase D232s Mutant
Length = 312
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 76/171 (44%), Gaps = 13/171 (7%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 73 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 132
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE--DERF--LV 167
+ + PA+Y + E G + + + Q V F NG+A+ D R L+
Sbjct: 133 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLI 189
Query: 168 VCESWKFRCVKHFLKVSGRTDREIFIDNLP----GGPDNVNLARDGSFWIS 214
V E+ + + +K + + + ++P GG D ++ D + ++
Sbjct: 190 VAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMSFDEDNNLLVA 240
>pdb|2IAU|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244y Mutant
Length = 312
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 76/171 (44%), Gaps = 13/171 (7%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 73 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 132
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE--DERF--LV 167
+ + PA+Y + E G + + + Q V F NG+A+ D R L+
Sbjct: 133 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLI 189
Query: 168 VCESWKFRCVKHFLKVSGRTDREIFIDNLP----GGPDNVNLARDGSFWIS 214
V E+ + + +K + + + ++P GG D ++ D + ++
Sbjct: 190 VAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 240
>pdb|2IAT|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244l Mutant
Length = 312
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 76/171 (44%), Gaps = 13/171 (7%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 73 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 132
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE--DERF--LV 167
+ + PA+Y + E G + + + Q V F NG+A+ D R L+
Sbjct: 133 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLI 189
Query: 168 VCESWKFRCVKHFLKVSGRTDREIFIDNLP----GGPDNVNLARDGSFWIS 214
V E+ + + +K + + + ++P GG D ++ D + ++
Sbjct: 190 VAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 240
>pdb|2IAS|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244f Mutant
Length = 312
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 76/171 (44%), Gaps = 13/171 (7%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 73 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 132
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE--DERF--LV 167
+ + PA+Y + E G + + + Q V F NG+A+ D R L+
Sbjct: 133 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLI 189
Query: 168 VCESWKFRCVKHFLKVSGRTDREIFIDNLP----GGPDNVNLARDGSFWIS 214
V E+ + + +K + + + ++P GG D ++ D + ++
Sbjct: 190 VAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 240
>pdb|2DSO|A Chain A, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|B Chain B, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|C Chain C, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|D Chain D, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|E Chain E, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|F Chain F, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
Length = 333
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 18/125 (14%)
Query: 97 NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANG 156
ND++ S G YFT S P G + P + ++ + ANG
Sbjct: 138 NDMVFDSKGGFYFTD-----------FRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANG 186
Query: 157 VALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLP------GGPDNVNLARDGS 210
+ALS DE+ L V E+ R + L+ G T + F +P GPD+ + D +
Sbjct: 187 IALSTDEKVLWVTETTANRLHRIALEDDGVTIQP-FGATIPYYFTGHEGPDSCCIDSDDN 245
Query: 211 FWISI 215
++++
Sbjct: 246 LYVAM 250
>pdb|3LI3|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), D121e Mutant
Length = 314
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 76/171 (44%), Gaps = 13/171 (7%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ N+ +G+L+ T
Sbjct: 75 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNECAFDYEGNLWITA 134
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE--DERF--LV 167
+ + PA+Y + E G + + + Q V F NG+A+ D R L+
Sbjct: 135 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLI 191
Query: 168 VCESWKFRCVKHFLKVSGRTDREIFIDNLP----GGPDNVNLARDGSFWIS 214
V E+ + + +K + + + ++P GG D ++ D + ++
Sbjct: 192 VAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 242
>pdb|2IAW|A Chain A, Crystal Structure Of Squid Ganglion Dfpase N175d Mutant
Length = 312
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 76/171 (44%), Gaps = 13/171 (7%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 73 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 132
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE--DERF--LV 167
+ + PA+Y + E G + + + Q V F +G+A+ D R L+
Sbjct: 133 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPDGIAVRHMNDGRPYQLI 189
Query: 168 VCESWKFRCVKHFLKVSGRTDREIFIDNLP----GGPDNVNLARDGSFWIS 214
V E+ + + +K + + + ++P GG D ++ D + ++
Sbjct: 190 VAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 240
>pdb|2GVX|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase),
Mutant D229n N175D
Length = 314
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 68/151 (45%), Gaps = 9/151 (5%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 75 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 134
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE--DERF--LV 167
+ + PA+Y + E G + + + Q V F +G+A+ D R L+
Sbjct: 135 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPDGIAVRHMNDGRPYQLI 191
Query: 168 VCESWKFRCVKHFLKVSGRTDREIFIDNLPG 198
V E+ + + +K + + + ++PG
Sbjct: 192 VAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|2GVU|A Chain A, Crystal Structure Of Diisopropyl Fluorophosphatase
(Dfpase), Mutant D229n N120D
Length = 314
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 68/151 (45%), Gaps = 9/151 (5%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ +D +G+L+ T
Sbjct: 75 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCAFDYEGNLWITA 134
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE--DERF--LV 167
+ + PA+Y + E G + + + Q V F NG+A+ D R L+
Sbjct: 135 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLI 191
Query: 168 VCESWKFRCVKHFLKVSGRTDREIFIDNLPG 198
V E+ + + +K + + + ++PG
Sbjct: 192 VAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|2DG1|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
Length = 333
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 121 YYLDL--VSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVK 178
Y+ D S P G + P + ++ + ANG+ALS DE+ L V E+ R +
Sbjct: 149 YFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHR 208
Query: 179 HFLKVSGRTDREIFIDNLP------GGPDNVNLARDGSFWISI 215
L+ G T + F +P GPD+ + D + ++++
Sbjct: 209 IALEDDGVTIQP-FGATIPYYFTGHEGPDSCCIDSDDNLYVAM 250
>pdb|2DG0|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|G Chain G, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|H Chain H, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|I Chain I, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|J Chain J, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|K Chain K, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|L Chain L, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
Length = 333
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 121 YYLDL--VSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVK 178
Y+ D S P G + P + ++ + ANG+ALS DE+ L V E+ R +
Sbjct: 149 YFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHR 208
Query: 179 HFLKVSGRTDREIFIDNLP------GGPDNVNLARDGSFWIS 214
L+ G T + F +P GPD+ + D + +++
Sbjct: 209 IALEDDGVTIQP-FGATIPYYFTGHEGPDSCCIDSDDNLYVA 249
>pdb|3SR6|C Chain C, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|L Chain L, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 745
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 32 IKRMHPNGTWEDWHQVGSQSLLGLTTT 58
K+ +P+G+WEDW Q + L+TT
Sbjct: 534 FKKKNPDGSWEDWVMAAYQDRVSLSTT 560
>pdb|3NRZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NRZ|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NVW|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVW|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVY|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVY|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
Length = 756
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 32 IKRMHPNGTWEDWHQVGSQSLLGLTTT 58
K+ +P+G+WEDW Q + L+TT
Sbjct: 534 FKKKNPDGSWEDWVMAAYQDRVSLSTT 560
>pdb|3ETR|C Chain C, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|N Chain N, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3NS1|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NS1|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NVV|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVV|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3NVZ|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
Length = 755
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 32 IKRMHPNGTWEDWHQVGSQSLLGLTTT 58
K+ +P+G+WEDW Q + L+TT
Sbjct: 534 FKKKNPDGSWEDWVMAAYQDRVSLSTT 560
>pdb|3EUB|C Chain C, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|L Chain L, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|U Chain U, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|4 Chain 4, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
Length = 762
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 32 IKRMHPNGTWEDWHQVGSQSLLGLTTT 58
K+ +P+G+WEDW Q + L+TT
Sbjct: 534 FKKKNPDGSWEDWVMAAYQDRVSLSTT 560
>pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase From Bovine Milk
pdb|3B9J|C Chain C, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
pdb|3B9J|K Chain K, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
Length = 763
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 32 IKRMHPNGTWEDWHQVGSQSLLGLTTT 58
K+ +P+G+WEDW Q + L+TT
Sbjct: 535 FKKKNPDGSWEDWVMAAYQDRVSLSTT 561
>pdb|3LI5|A Chain A, Diisopropyl Fluorophosphatase (Dfpase),
E21q,N120d,N175d,D229n Mutant
Length = 314
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 68/151 (45%), Gaps = 9/151 (5%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ +D +G+L+ T
Sbjct: 75 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCAFDYEGNLWITA 134
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE--DERF--LV 167
+ + PA+Y + E G + + + Q V F +G+A+ D R L+
Sbjct: 135 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPDGIAVRHMNDGRPYQLI 191
Query: 168 VCESWKFRCVKHFLKVSGRTDREIFIDNLPG 198
V E+ + + +K + + + ++PG
Sbjct: 192 VAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|3UNA|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nad Bound
pdb|3UNA|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nad Bound
pdb|3UNC|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNC|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNI|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nadh Bound
pdb|3UNI|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nadh Bound
Length = 1332
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 32 IKRMHPNGTWEDWHQVGSQSLLGLTTT 58
K+ +P+G+WEDW Q + L+TT
Sbjct: 1104 FKKKNPDGSWEDWVMAAYQDRVSLSTT 1130
>pdb|1N5X|A Chain A, Xanthine Dehydrogenase From Bovine Milk With Inhibitor Tei-
6720 Bound
pdb|1N5X|B Chain B, Xanthine Dehydrogenase From Bovine Milk With Inhibitor Tei-
6720 Bound
Length = 1331
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 32 IKRMHPNGTWEDWHQVGSQSLLGLTTT 58
K+ +P+G+WEDW Q + L+TT
Sbjct: 1103 FKKKNPDGSWEDWVMAAYQDRVSLSTT 1129
>pdb|3LI4|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), N120d,N175d,D229n
Mutant
Length = 314
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 68/151 (45%), Gaps = 9/151 (5%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ +D +G+L+ T
Sbjct: 75 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCAFDYEGNLWITA 134
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE--DERF--LV 167
+ + PA+Y + E G + + + Q V F +G+A+ D R L+
Sbjct: 135 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPDGIAVRHMNDGRPYQLI 191
Query: 168 VCESWKFRCVKHFLKVSGRTDREIFIDNLPG 198
V E+ + + +K + + + ++PG
Sbjct: 192 VAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1V97|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1V97|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1VDV|A Chain A, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|1VDV|B Chain B, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|3BDJ|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
A Covalently Bound Oxipurinol Inhibitor
pdb|3BDJ|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
A Covalently Bound Oxipurinol Inhibitor
pdb|3AM9|A Chain A, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AM9|B Chain B, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AMZ|A Chain A, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AMZ|B Chain B, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AX7|A Chain A, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX7|B Chain B, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX9|A Chain A, Bovine Xanthone Oxidase, Protease Cleaved Form
pdb|3AX9|B Chain B, Bovine Xanthone Oxidase, Protease Cleaved Form
Length = 1332
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 32 IKRMHPNGTWEDWHQVGSQSLLGLTTT 58
K+ +P+G+WEDW Q + L+TT
Sbjct: 1104 FKKKNPDGSWEDWVMAAYQDRVSLSTT 1130
>pdb|3E5Z|A Chain A, X-Ray Structure Of The Putative Gluconolactonase In
Protein Family Pf08450. Northeast Structural Genomics
Consortium Target Drr130.
pdb|3E5Z|B Chain B, X-Ray Structure Of The Putative Gluconolactonase In
Protein Family Pf08450. Northeast Structural Genomics
Consortium Target Drr130
Length = 296
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 16/162 (9%)
Query: 67 CDSQQGLLKVSEEGVTVLVSQ-------------FNGSQLRFANDVIEASDGSLYFTVSS 113
C ++QG L G+ L Q F G +L NDV A DGSL+F+ +
Sbjct: 75 CLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPT 134
Query: 114 TKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK 173
E P + + P ++ + D + NG+A L+V ++
Sbjct: 135 YGIDKPEEGYGGEXELPGRWVFRLAPDGTLSAPIRDRVK-PNGLAFLPSGN-LLVSDTGD 192
Query: 174 FRCVKHFLKVSGRTDRE-IFIDNLPGGPDNVNLARDGSFWIS 214
++ L G T+ + + PG D + + G W S
Sbjct: 193 NATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWAS 234
>pdb|2CKJ|A Chain A, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|B Chain B, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|C Chain C, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|D Chain D, Human Milk Xanthine Oxidoreductase
Length = 1333
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 15 VSVDGNGVLYTATGDGWIKRM------HPNGTWEDWHQVGSQSLLGLTTT 58
VS D NG A +KR+ +P+G+WEDW + L+ T
Sbjct: 1082 VSADLNGQAVYAACQTILKRLEPYKKKNPSGSWEDWVTAAYMDTVSLSAT 1131
>pdb|2E1Q|A Chain A, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|B Chain B, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|C Chain C, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|D Chain D, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
Length = 1333
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 15 VSVDGNGVLYTATGDGWIKRM------HPNGTWEDWHQVGSQSLLGLTTT 58
VS D NG A +KR+ +P+G+WEDW + L+ T
Sbjct: 1082 VSADLNGQAVYAACQTILKRLEPYKKKNPSGSWEDWVTAAYMDTVSLSAT 1131
>pdb|3D33|A Chain A, Crystal Structure Of A Duf3244 Family Protein With An
Immunoglobulin- Like Beta-Sandwich Fold (Bvu_0276) From
Bacteroides Vulgatus Atcc 8482 At 1.70 A Resolution
pdb|3D33|B Chain B, Crystal Structure Of A Duf3244 Family Protein With An
Immunoglobulin- Like Beta-Sandwich Fold (Bvu_0276) From
Bacteroides Vulgatus Atcc 8482 At 1.70 A Resolution
Length = 108
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKY 137
T+ ++ + + ND+ E S Y T+S F PAE Y ++G P G L Y
Sbjct: 52 TIRITDXAKGGVVYENDIPEVQ--SAYITISIANF-PAEEYKLEITGTPSGHLTGY 104
>pdb|3K8N|A Chain A, Crystal Structure Of E. Coli Ccmg
Length = 185
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 1 MIKLGEGIVNHPEDVSVDGNGVL-YTATGD----GWIKRMHPNGTWEDWHQVGSQ 50
M+ L G+ PE +DGNG++ Y GD W + + P WE + + +Q
Sbjct: 133 MLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKP--LWEKYSKEAAQ 185
>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant Cys 185 Ala
Length = 466
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 192 FIDNLPGGPDNVNLARDGS---FW-ISIIKMDPKGIQALQSCK 230
F++ PGGPD + LA G+ FW + + +P ++ LQ K
Sbjct: 36 FVELHPGGPDKILLAAGGALEPFWALYAVHGEPHVLELLQQYK 78
>pdb|3HBG|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant C185s
pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant
Sulfite Oxidase With Bound Substrate, Sulfite, At The
Active Site
Length = 466
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 192 FIDNLPGGPDNVNLARDGS---FW-ISIIKMDPKGIQALQSCK 230
F++ PGGPD + LA G+ FW + + +P ++ LQ K
Sbjct: 36 FVELHPGGPDKILLAAGGALEPFWALYAVHGEPHVLELLQQYK 78
>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver
pdb|1SOX|B Chain B, Sulfite Oxidase From Chicken Liver
Length = 466
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 192 FIDNLPGGPDNVNLARDGS---FW-ISIIKMDPKGIQALQSCK 230
F++ PGGPD + LA G+ FW + + +P ++ LQ K
Sbjct: 36 FVELHPGGPDKILLAAGGALEPFWALYAVHGEPHVLELLQQYK 78
>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr
322 Phe
Length = 466
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 192 FIDNLPGGPDNVNLARDGS---FW-ISIIKMDPKGIQALQSCK 230
F++ PGGPD + LA G+ FW + + +P ++ LQ K
Sbjct: 36 FVELHPGGPDKILLAAGGALEPFWALYAVHGEPHVLELLQQYK 78
>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 192 FIDNLPGGPDNVNLARDGS---FW-ISIIKMDPKGIQALQSCK 230
F++ PGGPD + LA G+ FW + + +P ++ LQ K
Sbjct: 36 FVELHPGGPDKILLAAGGALEPFWALYAVHGEPHVLELLQQYK 78
>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 192 FIDNLPGGPDNVNLARDGS---FW-ISIIKMDPKGIQALQSCK 230
F++ PGGPD + LA G+ FW + + +P ++ LQ K
Sbjct: 36 FVELHPGGPDKILLAAGGALEPFWALYAVHGEPHVLELLQQYK 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,904,770
Number of Sequences: 62578
Number of extensions: 340609
Number of successful extensions: 871
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 831
Number of HSP's gapped (non-prelim): 64
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)