Query 026118
Match_columns 243
No_of_seqs 151 out of 1450
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 03:59:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026118.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026118hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 100.0 1.4E-26 3E-31 184.6 19.3 192 47-240 113-307 (376)
2 PF08450 SGL: SMP-30/Gluconola 99.9 7.8E-25 1.7E-29 172.8 23.1 193 12-219 2-205 (246)
3 COG3386 Gluconolactonase [Carb 99.9 7.2E-24 1.6E-28 169.9 21.8 201 3-219 25-234 (307)
4 COG4257 Vgb Streptogramin lyas 99.8 4.6E-17 9.9E-22 124.4 17.2 190 3-220 97-298 (353)
5 COG4257 Vgb Streptogramin lyas 99.7 5E-16 1.1E-20 118.7 17.0 186 10-220 62-255 (353)
6 PLN02919 haloacid dehalogenase 99.7 3.9E-15 8.5E-20 137.8 24.4 196 6-219 564-825 (1057)
7 PLN02919 haloacid dehalogenase 99.7 3.5E-14 7.6E-19 131.6 23.6 193 7-219 621-880 (1057)
8 PF10282 Lactonase: Lactonase, 99.6 9.3E-13 2E-17 109.0 23.7 191 10-218 87-313 (345)
9 PF08450 SGL: SMP-30/Gluconola 99.6 1.3E-13 2.9E-18 108.8 17.0 143 8-171 84-245 (246)
10 PF03088 Str_synth: Strictosid 99.6 1.7E-14 3.6E-19 93.8 8.8 87 97-183 1-88 (89)
11 KOG4499 Ca2+-binding protein R 99.6 3.2E-13 6.9E-18 101.3 15.1 190 20-220 26-234 (310)
12 TIGR02604 Piru_Ver_Nterm putat 99.6 7.4E-13 1.6E-17 110.4 19.2 173 2-179 5-210 (367)
13 PF10282 Lactonase: Lactonase, 99.5 7.6E-12 1.6E-16 103.6 23.3 193 9-219 36-267 (345)
14 PRK11028 6-phosphogluconolacto 99.5 5.8E-11 1.3E-15 97.8 22.5 187 11-216 81-293 (330)
15 COG2706 3-carboxymuconate cycl 99.4 1.5E-10 3.2E-15 92.0 22.4 193 10-220 89-313 (346)
16 PRK11028 6-phosphogluconolacto 99.4 2.2E-10 4.7E-15 94.4 23.2 186 10-216 35-247 (330)
17 COG3386 Gluconolactonase [Carb 99.4 8.1E-11 1.8E-15 94.9 19.4 146 8-173 109-277 (307)
18 PF07995 GSDH: Glucose / Sorbo 99.4 1.4E-10 3E-15 95.3 18.3 156 9-171 1-200 (331)
19 COG2706 3-carboxymuconate cycl 99.3 1.1E-09 2.4E-14 87.0 21.4 193 9-220 39-266 (346)
20 COG3391 Uncharacterized conser 99.2 1.4E-08 3E-13 85.1 22.2 185 9-217 73-273 (381)
21 TIGR03866 PQQ_ABC_repeats PQQ- 99.2 5.3E-08 1.2E-12 78.4 23.9 186 10-216 31-226 (300)
22 TIGR02604 Piru_Ver_Nterm putat 99.2 3.7E-09 8E-14 88.3 17.1 141 49-218 14-204 (367)
23 PF06977 SdiA-regulated: SdiA- 99.1 3.7E-08 8.1E-13 77.0 19.4 192 6-215 18-239 (248)
24 TIGR03606 non_repeat_PQQ dehyd 99.0 5.3E-08 1.1E-12 82.3 19.4 168 2-172 23-249 (454)
25 TIGR03866 PQQ_ABC_repeats PQQ- 99.0 2E-07 4.4E-12 75.0 22.4 174 11-206 116-299 (300)
26 COG3391 Uncharacterized conser 99.0 2.1E-07 4.6E-12 78.1 21.6 188 10-218 31-228 (381)
27 KOG4659 Uncharacterized conser 99.0 7.8E-08 1.7E-12 87.5 19.2 182 12-218 409-682 (1899)
28 PF02239 Cytochrom_D1: Cytochr 98.9 3.4E-07 7.4E-12 76.3 18.3 170 22-217 7-191 (369)
29 PF02239 Cytochrom_D1: Cytochr 98.8 5.4E-07 1.2E-11 75.1 17.1 154 12-182 39-202 (369)
30 PF03022 MRJP: Major royal jel 98.8 2E-06 4.3E-11 69.2 18.4 187 13-218 4-256 (287)
31 KOG1214 Nidogen and related ba 98.8 3.9E-07 8.4E-12 79.9 14.8 185 10-219 1025-1218(1289)
32 PRK04792 tolB translocation pr 98.8 7.9E-06 1.7E-10 70.2 23.0 150 14-184 222-384 (448)
33 TIGR02658 TTQ_MADH_Hv methylam 98.7 1.1E-05 2.3E-10 66.5 22.2 90 21-112 13-124 (352)
34 PF03022 MRJP: Major royal jel 98.7 1.1E-06 2.3E-11 70.8 15.5 148 54-220 5-208 (287)
35 PRK05137 tolB translocation pr 98.7 1.4E-05 3.1E-10 68.4 23.1 171 14-210 206-389 (435)
36 KOG0291 WD40-repeat-containing 98.7 7.1E-06 1.5E-10 71.5 20.8 155 7-183 348-509 (893)
37 PRK04922 tolB translocation pr 98.7 1.4E-05 3E-10 68.5 22.4 177 14-216 208-398 (433)
38 PRK02889 tolB translocation pr 98.7 2E-05 4.3E-10 67.3 23.3 180 14-219 200-393 (427)
39 PRK03629 tolB translocation pr 98.7 2.6E-05 5.6E-10 66.7 23.4 180 14-219 203-396 (429)
40 COG3292 Predicted periplasmic 98.6 4.6E-07 9.9E-12 76.6 11.3 143 13-181 168-316 (671)
41 COG3292 Predicted periplasmic 98.6 2E-07 4.4E-12 78.7 9.1 174 18-219 130-311 (671)
42 PRK00178 tolB translocation pr 98.6 6.3E-05 1.4E-09 64.4 23.5 179 13-217 202-394 (430)
43 cd00200 WD40 WD40 domain, foun 98.6 7.1E-05 1.5E-09 58.8 21.9 178 11-216 95-280 (289)
44 PRK04043 tolB translocation pr 98.5 9.5E-05 2.1E-09 62.9 23.2 179 14-220 192-391 (419)
45 KOG4499 Ca2+-binding protein R 98.5 7.1E-06 1.5E-10 62.4 14.4 137 16-170 115-273 (310)
46 PRK05137 tolB translocation pr 98.5 5.9E-05 1.3E-09 64.6 21.8 133 31-184 183-324 (435)
47 cd00200 WD40 WD40 domain, foun 98.5 8.9E-05 1.9E-09 58.2 21.3 177 14-216 56-238 (289)
48 TIGR02800 propeller_TolB tol-p 98.5 0.00011 2.4E-09 62.5 22.8 179 15-219 195-387 (417)
49 COG3204 Uncharacterized protei 98.5 0.00012 2.7E-09 57.6 20.4 190 9-217 85-303 (316)
50 KOG4659 Uncharacterized conser 98.5 6.5E-06 1.4E-10 75.6 15.1 153 7-178 472-687 (1899)
51 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00012 2.6E-09 60.3 21.2 181 10-218 105-320 (352)
52 PRK02889 tolB translocation pr 98.4 0.00017 3.6E-09 61.7 22.3 155 31-210 177-340 (427)
53 KOG0315 G-protein beta subunit 98.4 8.5E-05 1.9E-09 57.0 17.0 181 10-215 84-276 (311)
54 PF01731 Arylesterase: Arylest 98.4 5.6E-06 1.2E-10 53.6 9.1 82 98-182 2-84 (86)
55 KOG1214 Nidogen and related ba 98.4 2.4E-05 5.2E-10 69.1 15.5 176 19-219 988-1179(1289)
56 PF07995 GSDH: Glucose / Sorbo 98.4 1.3E-05 2.8E-10 66.1 13.3 157 49-218 2-202 (331)
57 PRK01742 tolB translocation pr 98.4 0.00027 5.8E-09 60.5 21.8 177 13-220 207-395 (429)
58 TIGR03606 non_repeat_PQQ dehyd 98.4 7.7E-05 1.7E-09 63.4 18.0 164 43-218 24-250 (454)
59 PRK04922 tolB translocation pr 98.4 0.00014 3.1E-09 62.2 19.9 155 31-210 185-348 (433)
60 PF07433 DUF1513: Protein of u 98.4 0.00019 4.1E-09 57.5 18.9 158 15-184 56-249 (305)
61 PRK03629 tolB translocation pr 98.3 0.00062 1.3E-08 58.3 22.4 155 31-210 180-343 (429)
62 PRK02888 nitrous-oxide reducta 98.3 0.00011 2.4E-09 64.1 17.7 172 19-219 202-396 (635)
63 PRK04792 tolB translocation pr 98.3 0.00061 1.3E-08 58.7 22.4 138 54-215 222-368 (448)
64 PF06977 SdiA-regulated: SdiA- 98.3 0.00016 3.6E-09 56.7 16.3 151 8-179 63-247 (248)
65 COG2133 Glucose/sorbosone dehy 98.2 6.6E-05 1.4E-09 62.4 14.6 163 2-173 60-260 (399)
66 PRK00178 tolB translocation pr 98.2 0.00077 1.7E-08 57.7 21.8 132 32-184 181-321 (430)
67 KOG0291 WD40-repeat-containing 98.2 0.00023 5E-09 62.4 18.1 187 13-220 396-605 (893)
68 KOG1446 Histone H3 (Lys4) meth 98.2 0.0011 2.3E-08 52.5 20.0 179 11-215 58-250 (311)
69 PRK01029 tolB translocation pr 98.2 0.0012 2.6E-08 56.5 22.4 172 15-210 190-383 (428)
70 KOG2055 WD40 repeat protein [G 98.2 0.00021 4.5E-09 59.3 16.4 182 12-216 216-405 (514)
71 KOG1446 Histone H3 (Lys4) meth 98.2 0.0012 2.7E-08 52.2 19.9 148 13-183 104-263 (311)
72 KOG0278 Serine/threonine kinas 98.2 6.4E-05 1.4E-09 57.7 12.4 129 65-220 159-290 (334)
73 TIGR03032 conserved hypothetic 98.2 0.00038 8.2E-09 55.7 17.1 192 8-219 47-263 (335)
74 TIGR02800 propeller_TolB tol-p 98.1 0.0018 3.8E-08 55.1 21.8 156 31-211 171-335 (417)
75 KOG0318 WD40 repeat stress pro 98.1 0.00072 1.6E-08 57.1 18.4 153 10-184 406-562 (603)
76 PRK04043 tolB translocation pr 98.1 0.0022 4.8E-08 54.6 21.7 132 31-184 170-311 (419)
77 PRK01742 tolB translocation pr 98.1 0.0015 3.4E-08 55.9 20.9 133 31-183 185-325 (429)
78 KOG0318 WD40 repeat stress pro 98.1 0.0018 3.9E-08 54.8 19.9 187 6-220 317-510 (603)
79 PF05096 Glu_cyclase_2: Glutam 98.1 0.0013 2.8E-08 51.7 17.6 148 11-181 91-260 (264)
80 KOG0286 G-protein beta subunit 98.0 0.0037 8.1E-08 49.3 19.4 173 13-211 149-329 (343)
81 KOG1520 Predicted alkaloid syn 98.0 0.00012 2.6E-09 59.8 11.5 138 8-170 113-282 (376)
82 KOG0266 WD40 repeat-containing 98.0 0.0016 3.4E-08 56.3 19.2 151 9-183 203-365 (456)
83 PF05096 Glu_cyclase_2: Glutam 98.0 0.0031 6.6E-08 49.6 18.7 175 12-214 47-248 (264)
84 KOG0315 G-protein beta subunit 98.0 0.0011 2.3E-08 51.1 15.1 152 14-183 129-289 (311)
85 KOG0282 mRNA splicing factor [ 98.0 0.00013 2.8E-09 60.7 10.8 183 14-220 263-455 (503)
86 KOG0279 G protein beta subunit 98.0 0.0041 9E-08 48.7 18.3 182 11-220 65-255 (315)
87 COG4946 Uncharacterized protei 98.0 0.0006 1.3E-08 57.1 14.5 131 23-171 374-508 (668)
88 KOG0266 WD40 repeat-containing 97.9 0.0031 6.6E-08 54.5 19.7 186 14-222 164-360 (456)
89 KOG0278 Serine/threonine kinas 97.9 0.0019 4E-08 49.9 15.8 139 20-182 155-297 (334)
90 PF13360 PQQ_2: PQQ-like domai 97.9 0.0053 1.1E-07 47.8 19.3 172 16-216 32-220 (238)
91 KOG2106 Uncharacterized conser 97.9 0.0041 8.9E-08 52.5 18.7 180 9-215 329-509 (626)
92 cd00216 PQQ_DH Dehydrogenases 97.9 0.0041 9E-08 54.2 19.8 197 14-222 221-462 (488)
93 KOG0263 Transcription initiati 97.9 0.001 2.2E-08 58.5 15.7 185 15-227 457-650 (707)
94 PF05787 DUF839: Bacterial pro 97.8 0.0029 6.2E-08 55.3 17.6 123 92-215 348-520 (524)
95 TIGR03032 conserved hypothetic 97.8 0.00071 1.5E-08 54.1 12.5 137 11-169 104-258 (335)
96 COG3204 Uncharacterized protei 97.8 0.004 8.6E-08 49.3 15.6 155 8-182 127-312 (316)
97 COG3211 PhoX Predicted phospha 97.8 0.00037 8E-09 59.7 10.6 74 93-172 499-574 (616)
98 COG2133 Glucose/sorbosone dehy 97.7 0.003 6.4E-08 52.8 15.6 154 9-182 176-397 (399)
99 KOG0289 mRNA splicing factor [ 97.7 0.01 2.2E-07 49.3 18.2 143 51-215 305-450 (506)
100 PF05787 DUF839: Bacterial pro 97.7 0.00096 2.1E-08 58.2 13.1 79 92-171 434-521 (524)
101 KOG0293 WD40 repeat-containing 97.7 0.0032 6.9E-08 51.9 14.7 195 13-233 228-431 (519)
102 KOG0772 Uncharacterized conser 97.7 0.0022 4.7E-08 54.2 14.0 196 12-224 170-392 (641)
103 COG3490 Uncharacterized protei 97.7 0.0054 1.2E-07 48.4 15.0 165 37-218 56-246 (366)
104 COG4946 Uncharacterized protei 97.6 0.022 4.7E-07 48.1 19.0 51 133-184 383-433 (668)
105 PRK02888 nitrous-oxide reducta 97.6 0.0072 1.6E-07 53.2 17.0 198 11-234 236-469 (635)
106 TIGR03300 assembly_YfgL outer 97.6 0.013 2.8E-07 49.2 18.5 137 20-184 65-210 (377)
107 KOG2055 WD40 repeat protein [G 97.6 0.0025 5.5E-08 53.1 13.4 187 13-222 307-508 (514)
108 KOG0646 WD40 repeat protein [G 97.6 0.014 3E-07 48.8 17.5 201 14-236 86-316 (476)
109 KOG1274 WD40 repeat protein [G 97.6 0.011 2.4E-07 53.3 17.8 152 12-183 99-263 (933)
110 PF13360 PQQ_2: PQQ-like domai 97.6 0.014 2.9E-07 45.5 17.0 144 19-184 75-232 (238)
111 PF08662 eIF2A: Eukaryotic tra 97.6 0.015 3.3E-07 44.1 16.6 133 31-183 40-180 (194)
112 PRK11138 outer membrane biogen 97.6 0.006 1.3E-07 51.6 15.6 132 20-180 256-392 (394)
113 PF13449 Phytase-like: Esteras 97.5 0.022 4.7E-07 47.0 18.1 170 8-182 18-251 (326)
114 PTZ00421 coronin; Provisional 97.5 0.052 1.1E-06 47.3 24.5 150 12-183 78-246 (493)
115 KOG1273 WD40 repeat protein [G 97.5 0.014 3.1E-07 46.6 15.6 151 12-182 68-226 (405)
116 PF01436 NHL: NHL repeat; Int 97.5 0.00022 4.8E-09 35.8 3.8 27 152-179 2-28 (28)
117 PLN00033 photosystem II stabil 97.5 0.018 4E-07 48.6 17.4 144 15-179 244-396 (398)
118 PF07433 DUF1513: Protein of u 97.5 0.027 5.9E-07 45.4 17.0 153 50-218 6-183 (305)
119 KOG0296 Angio-associated migra 97.4 0.044 9.6E-07 44.6 19.8 148 14-184 69-222 (399)
120 COG1520 FOG: WD40-like repeat 97.4 0.027 6E-07 47.2 17.7 145 16-184 64-219 (370)
121 KOG1274 WD40 repeat protein [G 97.4 0.023 4.9E-07 51.4 17.4 134 23-183 69-219 (933)
122 KOG2048 WD40 repeat protein [G 97.4 0.028 6.2E-07 49.1 17.5 180 14-211 387-585 (691)
123 PRK11138 outer membrane biogen 97.4 0.014 3E-07 49.5 15.8 167 20-219 205-387 (394)
124 KOG0279 G protein beta subunit 97.4 0.042 9.2E-07 43.2 17.8 172 23-219 31-214 (315)
125 PF13449 Phytase-like: Esteras 97.4 0.025 5.4E-07 46.6 16.6 111 95-217 86-234 (326)
126 PF01436 NHL: NHL repeat; Int 97.4 0.00042 9.2E-09 34.7 3.7 27 9-35 1-28 (28)
127 KOG1539 WD repeat protein [Gen 97.4 0.015 3.3E-07 52.0 15.3 180 11-217 450-637 (910)
128 COG3490 Uncharacterized protei 97.4 0.017 3.6E-07 45.8 14.0 124 49-184 162-312 (366)
129 PRK01029 tolB translocation pr 97.3 0.031 6.8E-07 47.9 17.2 48 131-178 210-259 (428)
130 KOG0639 Transducin-like enhanc 97.3 0.0032 7E-08 53.1 10.5 170 17-217 473-653 (705)
131 KOG0283 WD40 repeat-containing 97.3 0.0092 2E-07 53.0 13.5 148 14-182 414-576 (712)
132 PTZ00421 coronin; Provisional 97.3 0.11 2.4E-06 45.3 22.7 155 12-184 128-292 (493)
133 KOG0293 WD40 repeat-containing 97.3 0.034 7.5E-07 46.0 15.4 150 13-183 273-426 (519)
134 PTZ00420 coronin; Provisional 97.2 0.13 2.8E-06 45.6 20.0 157 12-184 128-295 (568)
135 KOG0271 Notchless-like WD40 re 97.2 0.027 5.9E-07 46.2 14.2 98 94-215 368-469 (480)
136 KOG2106 Uncharacterized conser 97.2 0.05 1.1E-06 46.2 15.8 144 12-180 249-396 (626)
137 KOG1407 WD40 repeat protein [F 97.2 0.077 1.7E-06 41.5 16.1 146 11-182 66-219 (313)
138 COG0823 TolB Periplasmic compo 97.2 0.064 1.4E-06 45.8 16.9 109 54-182 242-358 (425)
139 TIGR03300 assembly_YfgL outer 97.1 0.033 7.2E-07 46.8 15.2 131 20-179 241-376 (377)
140 PF03088 Str_synth: Strictosid 97.1 0.0045 9.7E-08 40.4 7.6 63 14-77 2-85 (89)
141 KOG0263 Transcription initiati 97.1 0.02 4.3E-07 50.7 13.7 108 54-183 540-650 (707)
142 cd00216 PQQ_DH Dehydrogenases 97.1 0.054 1.2E-06 47.3 16.6 115 20-146 61-189 (488)
143 PF14870 PSII_BNR: Photosynthe 97.1 0.11 2.3E-06 42.3 18.5 180 10-219 17-208 (302)
144 KOG0771 Prolactin regulatory e 97.1 0.035 7.5E-07 45.8 14.1 177 13-210 148-337 (398)
145 PLN00181 protein SPA1-RELATED; 97.1 0.19 4.1E-06 46.7 20.9 149 12-183 486-649 (793)
146 PF08662 eIF2A: Eukaryotic tra 97.1 0.067 1.5E-06 40.6 15.1 99 96-216 62-162 (194)
147 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.1 0.05 1.1E-06 47.9 16.1 153 20-187 69-284 (527)
148 KOG0272 U4/U6 small nuclear ri 97.1 0.034 7.3E-07 46.1 13.7 141 52-215 306-448 (459)
149 KOG1273 WD40 repeat protein [G 97.1 0.11 2.5E-06 41.7 17.1 182 12-219 26-218 (405)
150 PF14517 Tachylectin: Tachylec 97.1 0.06 1.3E-06 41.6 14.3 156 3-181 28-205 (229)
151 COG3211 PhoX Predicted phospha 97.0 0.12 2.5E-06 45.0 17.1 127 92-220 415-577 (616)
152 PF14870 PSII_BNR: Photosynthe 97.0 0.13 2.8E-06 41.8 17.3 142 15-179 150-301 (302)
153 PLN00181 protein SPA1-RELATED; 97.0 0.28 6.2E-06 45.6 23.0 177 13-216 536-727 (793)
154 KOG0639 Transducin-like enhanc 97.0 0.013 2.8E-07 49.7 10.9 111 92-226 464-581 (705)
155 PF02333 Phytase: Phytase; In 97.0 0.067 1.5E-06 44.6 15.0 147 19-184 66-239 (381)
156 smart00135 LY Low-density lipo 97.0 0.0037 8.1E-08 34.4 5.5 35 149-183 6-40 (43)
157 KOG0282 mRNA splicing factor [ 96.9 0.016 3.5E-07 48.6 10.8 150 11-183 301-463 (503)
158 KOG0286 G-protein beta subunit 96.9 0.15 3.2E-06 40.6 20.0 155 7-183 53-218 (343)
159 KOG2096 WD40 repeat protein [G 96.9 0.14 3E-06 41.3 15.2 199 28-241 207-418 (420)
160 PF14583 Pectate_lyase22: Olig 96.9 0.13 2.9E-06 42.9 15.7 164 17-183 43-225 (386)
161 PTZ00420 coronin; Provisional 96.9 0.3 6.4E-06 43.4 24.4 150 12-183 77-249 (568)
162 KOG2139 WD40 repeat protein [G 96.8 0.055 1.2E-06 44.2 12.6 100 91-210 193-293 (445)
163 KOG2139 WD40 repeat protein [G 96.8 0.24 5.2E-06 40.6 16.8 149 49-220 195-368 (445)
164 KOG0273 Beta-transducin family 96.7 0.16 3.4E-06 42.9 15.0 145 12-180 238-387 (524)
165 PRK13684 Ycf48-like protein; P 96.7 0.28 6.1E-06 40.6 18.3 174 15-218 137-323 (334)
166 PRK13684 Ycf48-like protein; P 96.7 0.3 6.4E-06 40.5 16.5 146 13-181 176-330 (334)
167 KOG2919 Guanine nucleotide-bin 96.6 0.091 2E-06 42.3 12.6 145 19-183 121-282 (406)
168 KOG1539 WD repeat protein [Gen 96.6 0.061 1.3E-06 48.3 12.7 145 13-180 497-646 (910)
169 KOG0645 WD40 repeat protein [G 96.6 0.24 5.3E-06 39.0 21.2 154 10-182 15-180 (312)
170 COG3823 Glutamine cyclotransfe 96.6 0.15 3.2E-06 38.7 12.8 98 49-171 131-248 (262)
171 KOG0271 Notchless-like WD40 re 96.6 0.048 1E-06 44.8 10.9 108 54-183 120-236 (480)
172 KOG0640 mRNA cleavage stimulat 96.6 0.049 1.1E-06 43.6 10.6 147 13-181 176-334 (430)
173 PF05694 SBP56: 56kDa selenium 96.4 0.32 7E-06 41.2 15.2 64 153-216 313-393 (461)
174 PLN00033 photosystem II stabil 96.4 0.5 1.1E-05 40.1 19.5 137 54-218 243-391 (398)
175 KOG4649 PQQ (pyrrolo-quinoline 96.4 0.35 7.6E-06 38.1 17.3 99 26-146 69-171 (354)
176 KOG2048 WD40 repeat protein [G 96.3 0.71 1.5E-05 40.8 18.8 191 3-217 62-266 (691)
177 KOG0289 mRNA splicing factor [ 96.2 0.3 6.6E-06 40.9 13.8 132 13-167 351-492 (506)
178 KOG0319 WD40-repeat-containing 96.2 0.33 7.2E-06 43.3 14.4 147 15-183 25-180 (775)
179 PF14517 Tachylectin: Tachylec 96.2 0.034 7.3E-07 42.9 7.6 120 2-141 73-207 (229)
180 PF07494 Reg_prop: Two compone 96.1 0.0054 1.2E-07 29.4 2.1 17 200-216 7-23 (24)
181 KOG0292 Vesicle coat complex C 96.1 0.3 6.5E-06 44.7 14.2 69 7-77 248-319 (1202)
182 PF05694 SBP56: 56kDa selenium 96.1 0.74 1.6E-05 39.1 15.7 196 20-220 87-335 (461)
183 PF07494 Reg_prop: Two compone 96.0 0.011 2.3E-07 28.4 2.8 20 93-112 4-23 (24)
184 KOG0288 WD40 repeat protein Ti 96.0 0.48 1E-05 39.5 13.5 124 28-170 320-450 (459)
185 KOG0772 Uncharacterized conser 95.9 0.22 4.7E-06 42.7 11.9 145 52-215 170-335 (641)
186 KOG0973 Histone transcription 95.9 0.74 1.6E-05 42.7 16.0 144 54-217 74-239 (942)
187 KOG0272 U4/U6 small nuclear ri 95.9 0.46 1E-05 39.7 13.2 152 5-177 299-455 (459)
188 KOG0973 Histone transcription 95.8 0.38 8.2E-06 44.5 13.8 137 13-172 73-240 (942)
189 COG1520 FOG: WD40-like repeat 95.8 0.36 7.9E-06 40.5 12.9 106 57-184 65-173 (370)
190 KOG1407 WD40 repeat protein [F 95.7 0.75 1.6E-05 36.2 13.5 107 54-182 152-261 (313)
191 KOG4649 PQQ (pyrrolo-quinoline 95.7 0.76 1.6E-05 36.3 16.7 148 10-184 13-167 (354)
192 KOG0296 Angio-associated migra 95.7 1 2.2E-05 37.1 18.9 205 9-218 148-389 (399)
193 PF14583 Pectate_lyase22: Olig 95.6 0.19 4E-06 42.0 10.3 84 131-218 59-145 (386)
194 TIGR03118 PEPCTERM_chp_1 conse 95.6 0.94 2E-05 36.6 17.1 123 53-183 141-280 (336)
195 PRK13616 lipoprotein LpqB; Pro 95.6 1.6 3.6E-05 39.1 19.5 153 10-184 350-529 (591)
196 KOG0306 WD40-repeat-containing 95.5 1.9 4E-05 39.0 16.5 143 50-218 510-655 (888)
197 KOG0294 WD40 repeat-containing 95.5 1.1 2.4E-05 36.2 14.9 133 28-183 61-198 (362)
198 KOG0284 Polyadenylation factor 95.4 0.23 5E-06 41.3 9.8 144 15-183 102-253 (464)
199 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.3 1.9 4.1E-05 38.2 20.2 84 131-218 440-524 (527)
200 KOG4378 Nuclear protein COP1 [ 95.3 1.3 2.7E-05 38.2 14.0 137 28-183 141-281 (673)
201 TIGR02276 beta_rpt_yvtn 40-res 95.3 0.11 2.4E-06 28.2 5.7 42 161-206 1-42 (42)
202 KOG0310 Conserved WD40 repeat- 95.2 1.7 3.7E-05 37.0 14.7 150 12-183 71-226 (487)
203 KOG0301 Phospholipase A2-activ 95.2 1.5 3.4E-05 39.0 14.7 102 54-181 145-248 (745)
204 PF08553 VID27: VID27 cytoplas 95.2 1.3 2.8E-05 40.8 15.0 150 11-181 482-646 (794)
205 COG3823 Glutamine cyclotransfe 95.2 1 2.2E-05 34.4 14.3 167 21-214 56-246 (262)
206 KOG0310 Conserved WD40 repeat- 95.1 1.9 4E-05 36.8 15.3 143 14-177 158-304 (487)
207 PF00930 DPPIV_N: Dipeptidyl p 95.1 1.7 3.7E-05 36.2 17.9 83 131-218 259-348 (353)
208 KOG1036 Mitotic spindle checkp 95.0 1.1 2.4E-05 35.9 12.3 106 54-183 18-125 (323)
209 KOG0643 Translation initiation 95.0 1.4 2.9E-05 34.9 19.8 187 9-217 9-210 (327)
210 KOG0275 Conserved WD40 repeat- 95.0 1.5 3.3E-05 35.5 14.3 111 54-188 353-473 (508)
211 KOG0650 WD40 repeat nucleolar 95.0 1.8 3.9E-05 38.1 14.3 104 96-220 524-631 (733)
212 KOG1963 WD40 repeat protein [G 95.0 2.3 5E-05 38.8 15.5 147 12-182 163-322 (792)
213 PF00058 Ldl_recept_b: Low-den 95.0 0.087 1.9E-06 29.0 4.5 40 165-207 2-42 (42)
214 PF05935 Arylsulfotrans: Aryls 94.9 1.4 3E-05 38.5 14.0 114 15-147 153-308 (477)
215 KOG0643 Translation initiation 94.6 1.8 4E-05 34.2 15.0 125 27-173 71-211 (327)
216 COG5276 Uncharacterized conser 94.5 2.1 4.6E-05 34.5 17.3 176 20-224 96-283 (370)
217 PRK13616 lipoprotein LpqB; Pro 94.5 3.5 7.7E-05 37.0 19.5 178 22-218 322-517 (591)
218 KOG0646 WD40 repeat protein [G 94.4 2.8 6E-05 35.6 16.7 146 13-182 127-307 (476)
219 TIGR02276 beta_rpt_yvtn 40-res 94.3 0.32 7E-06 26.3 6.0 30 131-160 13-42 (42)
220 KOG0275 Conserved WD40 repeat- 94.1 0.71 1.5E-05 37.4 9.5 150 10-182 214-378 (508)
221 KOG0319 WD40-repeat-containing 94.1 1.5 3.3E-05 39.3 12.1 109 55-184 25-137 (775)
222 KOG0645 WD40 repeat protein [G 94.1 2.4 5.2E-05 33.6 14.5 111 54-182 19-135 (312)
223 KOG1963 WD40 repeat protein [G 94.0 3.6 7.9E-05 37.6 14.5 144 14-183 210-376 (792)
224 TIGR03074 PQQ_membr_DH membran 94.0 5.3 0.00011 37.1 18.9 60 20-80 194-280 (764)
225 KOG0283 WD40 repeat-containing 93.9 4.8 0.0001 36.5 15.8 142 14-182 374-532 (712)
226 KOG0303 Actin-binding protein 93.9 3.3 7.2E-05 34.6 13.7 137 28-184 152-296 (472)
227 COG0823 TolB Periplasmic compo 93.9 3.8 8.3E-05 35.2 17.1 71 100-185 244-317 (425)
228 KOG2919 Guanine nucleotide-bin 93.8 2.5 5.4E-05 34.5 11.8 153 10-183 159-328 (406)
229 PF00058 Ldl_recept_b: Low-den 93.7 0.45 9.8E-06 26.1 5.6 41 105-161 1-42 (42)
230 TIGR03118 PEPCTERM_chp_1 conse 93.6 3.4 7.3E-05 33.6 15.3 161 49-217 23-207 (336)
231 KOG0285 Pleiotropic regulator 93.4 3.9 8.4E-05 33.8 14.5 102 4-111 146-253 (460)
232 PF05935 Arylsulfotrans: Aryls 93.4 5.1 0.00011 35.0 16.3 154 22-183 115-302 (477)
233 KOG2096 WD40 repeat protein [G 93.4 3.7 8E-05 33.4 13.9 144 11-171 88-248 (420)
234 PF02333 Phytase: Phytase; In 93.3 4.2 9E-05 34.3 13.1 84 133-219 130-230 (381)
235 smart00135 LY Low-density lipo 93.2 0.3 6.5E-06 26.5 4.5 34 6-39 5-40 (43)
236 KOG0299 U3 snoRNP-associated p 93.1 4.9 0.00011 34.2 14.9 63 153-217 382-446 (479)
237 PF02897 Peptidase_S9_N: Proly 93.1 4.9 0.00011 34.2 16.0 153 54-218 128-297 (414)
238 KOG0265 U5 snRNP-specific prot 93.0 4 8.8E-05 32.9 14.6 66 14-80 52-122 (338)
239 KOG0294 WD40 repeat-containing 92.9 4.3 9.3E-05 33.0 14.5 135 22-183 99-238 (362)
240 KOG4441 Proteins containing BT 92.8 6.8 0.00015 35.1 14.6 182 20-224 332-538 (571)
241 KOG1272 WD40-repeat-containing 92.8 4.7 0.0001 34.5 12.5 59 152-215 294-352 (545)
242 KOG2110 Uncharacterized conser 92.8 4.9 0.00011 33.3 12.5 99 11-113 128-238 (391)
243 KOG0316 Conserved WD40 repeat- 92.8 3.8 8.2E-05 32.0 11.4 132 28-184 79-215 (307)
244 PF10647 Gmad1: Lipoprotein Lp 92.4 4.6 0.0001 32.0 20.1 145 54-220 28-188 (253)
245 PF06739 SBBP: Beta-propeller 92.3 0.16 3.5E-06 27.3 2.4 21 199-219 14-34 (38)
246 KOG3881 Uncharacterized conser 92.1 4 8.8E-05 34.0 11.1 118 25-162 221-342 (412)
247 KOG0273 Beta-transducin family 92.0 7.3 0.00016 33.4 15.8 69 95-181 454-522 (524)
248 KOG0295 WD40 repeat-containing 91.9 6.5 0.00014 32.6 16.2 80 132-216 314-394 (406)
249 PF14269 Arylsulfotran_2: Aryl 91.7 6.4 0.00014 32.1 13.5 122 54-183 148-290 (299)
250 KOG4378 Nuclear protein COP1 [ 91.5 8.6 0.00019 33.3 14.0 85 131-219 186-272 (673)
251 KOG0308 Conserved WD40 repeat- 91.5 10 0.00022 34.0 15.1 182 14-220 122-321 (735)
252 KOG0268 Sof1-like rRNA process 91.0 1.4 3.1E-05 36.2 7.5 147 13-180 191-343 (433)
253 KOG0306 WD40-repeat-containing 90.7 13 0.00029 33.9 16.3 190 11-218 375-571 (888)
254 PF06433 Me-amine-dh_H: Methyl 90.6 8.9 0.00019 31.8 18.3 141 21-182 3-165 (342)
255 KOG0264 Nucleosome remodeling 90.5 9.8 0.00021 32.2 12.3 151 14-182 182-347 (422)
256 KOG0268 Sof1-like rRNA process 90.3 3.8 8.3E-05 33.9 9.3 51 130-181 208-258 (433)
257 KOG1036 Mitotic spindle checkp 90.2 8.6 0.00019 31.1 15.9 145 13-183 17-164 (323)
258 PHA02713 hypothetical protein; 90.1 13 0.00029 33.2 16.3 81 132-217 432-521 (557)
259 KOG3881 Uncharacterized conser 90.1 7.4 0.00016 32.5 10.8 109 54-183 207-321 (412)
260 KOG0285 Pleiotropic regulator 90.1 9.9 0.00021 31.6 14.9 179 7-213 233-425 (460)
261 KOG0265 U5 snRNP-specific prot 90.0 9 0.00019 31.0 11.3 113 50-182 49-163 (338)
262 KOG0316 Conserved WD40 repeat- 89.5 8.6 0.00019 30.1 15.8 173 15-219 23-206 (307)
263 PF00930 DPPIV_N: Dipeptidyl p 89.4 4.1 8.9E-05 34.0 9.4 25 152-176 101-125 (353)
264 KOG0301 Phospholipase A2-activ 89.2 16 0.00035 33.0 12.8 141 15-182 146-288 (745)
265 KOG2394 WD40 protein DMR-N9 [G 88.5 2.4 5.1E-05 36.9 7.2 55 50-110 292-349 (636)
266 KOG1445 Tumor-specific antigen 88.3 7.6 0.00016 34.8 10.2 139 20-182 640-798 (1012)
267 KOG2321 WD40 repeat protein [G 88.2 18 0.00039 32.1 14.8 115 14-147 138-265 (703)
268 KOG1538 Uncharacterized conser 88.2 20 0.00043 32.5 16.2 56 11-69 14-72 (1081)
269 PF06433 Me-amine-dh_H: Methyl 88.1 14 0.0003 30.7 18.2 167 9-184 134-322 (342)
270 KOG2110 Uncharacterized conser 88.0 14 0.00031 30.7 16.0 86 129-217 150-238 (391)
271 PF08553 VID27: VID27 cytoplas 87.7 1.8 4E-05 39.9 6.5 65 12-77 580-645 (794)
272 KOG1524 WD40 repeat-containing 87.6 19 0.00041 31.7 11.9 84 22-111 77-164 (737)
273 KOG0308 Conserved WD40 repeat- 87.5 18 0.0004 32.4 12.0 63 13-77 175-240 (735)
274 KOG0284 Polyadenylation factor 87.3 5.8 0.00012 33.4 8.5 147 12-182 183-337 (464)
275 PHA02713 hypothetical protein; 87.2 21 0.00047 31.9 15.4 120 31-170 273-405 (557)
276 KOG0299 U3 snoRNP-associated p 87.0 18 0.0004 30.9 14.9 70 95-179 382-453 (479)
277 KOG0305 Anaphase promoting com 86.4 22 0.00047 31.1 16.1 154 50-227 303-462 (484)
278 KOG3914 WD repeat protein WDR4 86.4 9.8 0.00021 31.8 9.4 106 54-181 67-180 (390)
279 KOG2111 Uncharacterized conser 86.2 14 0.00029 30.2 9.8 71 95-183 183-257 (346)
280 KOG2315 Predicted translation 86.0 23 0.0005 31.1 15.1 131 31-183 252-391 (566)
281 KOG4328 WD40 protein [Function 85.9 21 0.00047 30.6 13.2 30 152-182 370-399 (498)
282 COG4247 Phy 3-phytase (myo-ino 85.7 16 0.00035 29.0 13.5 84 133-217 127-225 (364)
283 KOG0649 WD40 repeat protein [G 85.6 16 0.00034 28.8 9.9 72 92-183 113-187 (325)
284 PF15492 Nbas_N: Neuroblastoma 85.5 17 0.00037 29.1 16.5 144 54-218 2-169 (282)
285 PF14269 Arylsulfotran_2: Aryl 85.4 19 0.00041 29.4 10.8 37 95-148 145-181 (299)
286 KOG0641 WD40 repeat protein [G 85.4 15 0.00033 28.4 9.7 65 12-77 234-301 (350)
287 KOG0281 Beta-TrCP (transducin 85.3 7.4 0.00016 32.1 8.0 88 133-227 341-429 (499)
288 PF00400 WD40: WD domain, G-be 84.7 4 8.8E-05 21.2 5.6 29 151-180 11-39 (39)
289 KOG0295 WD40 repeat-containing 84.6 6.8 0.00015 32.4 7.6 144 18-181 117-264 (406)
290 smart00564 PQQ beta-propeller 84.4 2 4.4E-05 21.7 3.2 25 18-42 4-29 (33)
291 KOG0640 mRNA cleavage stimulat 83.9 22 0.00048 29.0 13.3 150 12-183 219-384 (430)
292 KOG0918 Selenium-binding prote 83.7 8.9 0.00019 32.3 8.0 20 152-171 389-408 (476)
293 KOG1408 WD40 repeat protein [F 83.5 17 0.00038 33.1 10.1 109 54-182 601-713 (1080)
294 PF01731 Arylesterase: Arylest 83.3 6.2 0.00013 25.6 5.7 46 30-77 36-82 (86)
295 KOG0292 Vesicle coat complex C 83.3 41 0.0009 31.7 13.7 153 8-183 8-166 (1202)
296 KOG1408 WD40 repeat protein [F 83.3 37 0.00081 31.2 13.3 103 92-213 595-709 (1080)
297 KOG0650 WD40 repeat nucleolar 83.3 12 0.00026 33.3 8.9 113 42-180 560-678 (733)
298 PHA03098 kelch-like protein; P 83.2 32 0.0007 30.4 16.4 134 31-183 312-465 (534)
299 KOG2321 WD40 repeat protein [G 82.1 32 0.00069 30.6 10.9 106 54-179 233-340 (703)
300 KOG0313 Microtubule binding pr 82.0 29 0.00064 29.1 15.0 150 10-183 194-377 (423)
301 PF15390 DUF4613: Domain of un 81.6 18 0.00039 32.3 9.4 65 149-213 336-400 (671)
302 KOG2394 WD40 protein DMR-N9 [G 81.3 8.1 0.00018 33.8 7.1 70 95-182 292-362 (636)
303 KOG2314 Translation initiation 80.4 21 0.00045 31.6 9.3 103 98-215 450-555 (698)
304 TIGR03074 PQQ_membr_DH membran 80.3 52 0.0011 30.9 18.5 23 20-42 260-283 (764)
305 KOG0641 WD40 repeat protein [G 79.9 26 0.00057 27.2 15.3 74 93-184 231-305 (350)
306 KOG1215 Low-density lipoprotei 79.6 58 0.0013 31.0 16.8 183 11-218 438-630 (877)
307 PF07676 PD40: WD40-like Beta 79.5 7.2 0.00016 20.5 4.8 20 154-173 11-30 (39)
308 KOG0313 Microtubule binding pr 78.5 39 0.00084 28.4 14.6 101 6-110 257-363 (423)
309 KOG4227 WD40 repeat protein [G 78.4 31 0.00068 29.1 9.4 108 54-182 61-179 (609)
310 PF13570 PQQ_3: PQQ-like domai 77.8 3.2 6.9E-05 22.2 2.6 23 14-37 16-38 (40)
311 PF10647 Gmad1: Lipoprotein Lp 77.4 34 0.00073 27.1 19.5 92 11-106 25-124 (253)
312 PHA02790 Kelch-like protein; P 77.1 50 0.0011 28.9 15.1 136 19-182 317-470 (480)
313 PF11768 DUF3312: Protein of u 77.0 16 0.00034 32.3 7.7 66 11-77 261-327 (545)
314 KOG4441 Proteins containing BT 76.9 44 0.00095 30.1 10.8 164 31-218 302-485 (571)
315 PF01011 PQQ: PQQ enzyme repea 76.6 4.6 9.9E-05 21.4 3.0 23 21-43 1-24 (38)
316 KOG0771 Prolactin regulatory e 76.3 46 0.001 28.1 13.2 137 11-167 188-340 (398)
317 PRK10115 protease 2; Provision 75.2 52 0.0011 30.4 11.1 74 95-184 128-209 (686)
318 PF02897 Peptidase_S9_N: Proly 74.9 52 0.0011 28.0 18.5 189 14-222 128-350 (414)
319 KOG0322 G-protein beta subunit 74.6 12 0.00026 29.8 5.9 69 94-180 252-321 (323)
320 KOG1538 Uncharacterized conser 74.3 71 0.0015 29.2 14.3 147 14-181 137-292 (1081)
321 PF02191 OLF: Olfactomedin-lik 73.6 44 0.00095 26.5 15.1 103 98-214 127-236 (250)
322 KOG0305 Anaphase promoting com 73.2 65 0.0014 28.3 14.7 153 10-182 302-461 (484)
323 KOG1009 Chromatin assembly com 73.0 25 0.00054 29.7 7.6 56 95-167 125-181 (434)
324 PHA03098 kelch-like protein; P 72.8 68 0.0015 28.4 16.5 49 133-183 457-512 (534)
325 KOG0276 Vesicle coat complex C 69.8 87 0.0019 28.4 11.6 32 5-36 223-255 (794)
326 KOG3914 WD repeat protein WDR4 69.3 69 0.0015 27.0 12.6 149 12-184 65-225 (390)
327 KOG2395 Protein involved in va 69.3 83 0.0018 28.0 13.2 132 28-181 354-499 (644)
328 KOG1063 RNA polymerase II elon 69.2 24 0.00053 31.9 7.1 74 96-182 528-602 (764)
329 PF11768 DUF3312: Protein of u 68.7 44 0.00096 29.6 8.5 50 131-182 280-329 (545)
330 KOG1445 Tumor-specific antigen 68.5 51 0.0011 29.9 8.8 116 51-182 723-844 (1012)
331 PHA02790 Kelch-like protein; P 67.8 85 0.0018 27.5 17.2 168 20-216 271-454 (480)
332 KOG1063 RNA polymerase II elon 67.8 99 0.0022 28.3 11.9 65 12-77 528-600 (764)
333 COG5276 Uncharacterized conser 67.6 67 0.0015 26.3 16.8 138 22-184 140-287 (370)
334 KOG1034 Transcriptional repres 67.6 20 0.00043 29.5 5.8 73 103-180 304-381 (385)
335 KOG1215 Low-density lipoprotei 67.1 1.2E+02 0.0026 29.0 14.8 150 9-181 479-638 (877)
336 PF15416 DUF4623: Domain of un 66.4 76 0.0016 26.4 11.0 113 60-184 142-273 (442)
337 KOG2111 Uncharacterized conser 66.2 73 0.0016 26.2 16.7 107 54-182 99-212 (346)
338 smart00284 OLF Olfactomedin-li 66.0 66 0.0014 25.6 14.4 102 98-213 132-240 (255)
339 KOG2395 Protein involved in va 65.5 23 0.00049 31.2 6.1 65 12-77 433-498 (644)
340 KOG0918 Selenium-binding prote 64.5 26 0.00056 29.7 6.1 30 155-184 315-344 (476)
341 KOG4497 Uncharacterized conser 62.8 47 0.001 27.5 7.1 59 149-211 89-147 (447)
342 smart00284 OLF Olfactomedin-li 62.6 78 0.0017 25.2 16.5 63 103-181 184-251 (255)
343 KOG1517 Guanine nucleotide bin 61.2 1.7E+02 0.0037 28.6 13.3 171 15-209 1169-1363(1387)
344 PF04053 Coatomer_WDAD: Coatom 60.5 1.2E+02 0.0025 26.5 13.7 136 11-181 34-172 (443)
345 TIGR03803 Gloeo_Verruco Gloeo_ 60.5 23 0.0005 18.4 4.3 30 104-146 1-30 (34)
346 KOG0321 WD40 repeat-containing 60.1 1.4E+02 0.0029 27.2 12.0 26 54-79 276-302 (720)
347 PF14339 DUF4394: Domain of un 59.7 84 0.0018 24.7 12.3 109 51-179 29-160 (236)
348 KOG0321 WD40 repeat-containing 59.6 59 0.0013 29.4 7.6 103 61-182 64-175 (720)
349 PF11725 AvrE: Pathogenicity f 59.2 49 0.0011 33.5 7.7 52 13-66 366-418 (1774)
350 KOG0303 Actin-binding protein 58.8 1E+02 0.0022 26.3 8.5 53 131-184 153-205 (472)
351 KOG1009 Chromatin assembly com 55.7 1.3E+02 0.0028 25.6 12.9 31 153-184 125-155 (434)
352 KOG0277 Peroxisomal targeting 53.6 1.2E+02 0.0025 24.4 13.0 73 95-183 149-222 (311)
353 KOG0267 Microtubule severing p 51.6 1.4E+02 0.003 27.6 8.7 174 12-215 73-256 (825)
354 KOG1230 Protein containing rep 51.6 1.6E+02 0.0035 25.4 11.0 70 72-148 99-170 (521)
355 KOG3545 Olfactomedin and relat 50.2 1.3E+02 0.0028 23.9 10.7 39 97-148 125-163 (249)
356 KOG0322 G-protein beta subunit 49.9 42 0.00091 26.9 4.8 59 13-74 255-318 (323)
357 PF14339 DUF4394: Domain of un 49.8 1.3E+02 0.0027 23.7 10.4 71 95-184 28-105 (236)
358 TIGR02608 delta_60_rpt delta-6 49.3 28 0.00061 20.4 3.0 28 155-183 4-38 (55)
359 KOG3621 WD40 repeat-containing 48.9 79 0.0017 28.9 6.8 89 131-220 54-148 (726)
360 PF08309 LVIVD: LVIVD repeat; 48.7 35 0.00075 18.7 3.1 18 60-77 10-27 (42)
361 KOG4283 Transcription-coupled 48.2 1.5E+02 0.0033 24.3 9.3 30 50-80 248-278 (397)
362 PLN02193 nitrile-specifier pro 47.8 1.9E+02 0.0042 25.3 19.1 108 60-183 228-352 (470)
363 KOG0276 Vesicle coat complex C 47.5 2.2E+02 0.0049 26.0 14.4 144 15-181 19-170 (794)
364 KOG3567 Peptidylglycine alpha- 47.0 41 0.00088 29.1 4.6 21 198-218 467-487 (501)
365 TIGR03548 mutarot_permut cycli 46.9 1.6E+02 0.0034 24.1 18.6 73 59-148 122-202 (323)
366 KOG1310 WD40 repeat protein [G 46.6 1.8E+02 0.0039 26.1 8.4 114 94-224 51-176 (758)
367 KOG2315 Predicted translation 46.4 2.2E+02 0.0047 25.4 14.2 72 95-183 272-345 (566)
368 PF13964 Kelch_6: Kelch motif 45.6 53 0.0011 18.2 3.9 19 130-148 26-44 (50)
369 PLN02153 epithiospecifier prot 45.4 1.7E+02 0.0038 24.1 13.1 17 132-148 101-117 (341)
370 TIGR03548 mutarot_permut cycli 44.6 1.7E+02 0.0038 23.8 12.0 51 132-183 139-195 (323)
371 KOG4227 WD40 repeat protein [G 43.1 2.1E+02 0.0046 24.4 11.5 67 10-77 106-177 (609)
372 KOG1524 WD40 repeat-containing 43.1 2.5E+02 0.0054 25.2 12.4 27 154-180 259-285 (737)
373 PRK14131 N-acetylneuraminic ac 42.6 2.1E+02 0.0045 24.1 16.4 37 132-170 189-228 (376)
374 PF02191 OLF: Olfactomedin-lik 42.1 1.7E+02 0.0038 23.2 17.2 65 101-181 177-246 (250)
375 KOG1188 WD40 repeat protein [G 42.1 2.1E+02 0.0044 24.0 13.0 143 23-183 43-197 (376)
376 KOG3621 WD40 repeat-containing 42.0 1.4E+02 0.0031 27.4 7.3 96 16-113 40-145 (726)
377 KOG0647 mRNA export protein (c 41.8 2E+02 0.0043 23.7 16.2 75 12-86 30-111 (347)
378 TIGR03547 muta_rot_YjhT mutatr 41.8 2E+02 0.0043 23.7 12.8 38 132-170 85-125 (346)
379 PF12894 Apc4_WD40: Anaphase-p 41.6 65 0.0014 18.1 4.2 29 154-183 14-42 (47)
380 KOG0647 mRNA export protein (c 41.5 2E+02 0.0043 23.7 13.9 61 151-215 251-311 (347)
381 PF11725 AvrE: Pathogenicity f 40.8 1.3E+02 0.0029 30.7 7.5 10 15-24 296-305 (1774)
382 KOG2114 Vacuolar assembly/sort 39.6 3.4E+02 0.0074 25.8 17.6 53 130-184 145-203 (933)
383 KOG0269 WD40 repeat-containing 38.4 3.4E+02 0.0074 25.4 10.8 177 12-216 179-367 (839)
384 PF15416 DUF4623: Domain of un 38.2 2.4E+02 0.0052 23.6 9.1 59 54-113 187-261 (442)
385 PTZ00486 apyrase Superfamily; 38.0 79 0.0017 26.4 4.9 18 162-180 124-141 (352)
386 KOG0288 WD40 repeat protein Ti 37.8 2.6E+02 0.0057 24.0 12.1 54 132-186 363-421 (459)
387 KOG2314 Translation initiation 37.2 3.1E+02 0.0068 24.7 11.4 63 94-170 493-556 (698)
388 TIGR03547 muta_rot_YjhT mutatr 36.3 2.4E+02 0.0053 23.2 18.0 50 132-183 168-226 (346)
389 KOG2377 Uncharacterized conser 36.3 3E+02 0.0066 24.2 13.8 66 12-77 25-94 (657)
390 COG5321 Uncharacterized protei 35.1 49 0.0011 23.3 2.8 35 200-234 51-85 (164)
391 KOG1272 WD40-repeat-containing 32.3 3.3E+02 0.0071 23.9 7.7 18 94-111 294-311 (545)
392 PLN02153 epithiospecifier prot 31.9 2.9E+02 0.0063 22.7 18.3 50 132-183 159-226 (341)
393 COG4880 Secreted protein conta 31.7 3.5E+02 0.0076 23.6 9.0 10 132-141 120-129 (603)
394 KOG4547 WD40 repeat-containing 31.0 3.9E+02 0.0085 23.9 15.4 107 23-153 73-185 (541)
395 KOG0649 WD40 repeat protein [G 30.8 2.8E+02 0.0061 22.2 16.3 71 8-80 113-188 (325)
396 KOG2114 Vacuolar assembly/sort 30.1 5E+02 0.011 24.8 14.3 62 15-77 131-199 (933)
397 KOG1310 WD40 repeat protein [G 29.7 4.2E+02 0.0092 23.9 8.8 114 51-183 53-179 (758)
398 KOG0307 Vesicle coat complex C 29.2 2.3E+02 0.0051 27.5 6.9 152 14-183 121-285 (1049)
399 KOG1230 Protein containing rep 29.1 3.9E+02 0.0084 23.3 11.5 37 132-169 207-248 (521)
400 TIGR02171 Fb_sc_TIGR02171 Fibr 29.1 5.3E+02 0.012 24.9 9.5 51 133-183 330-386 (912)
401 PF12275 DUF3616: Protein of u 29.0 1.8E+02 0.004 24.2 5.7 64 155-220 3-80 (330)
402 KOG0267 Microtubule severing p 28.6 4.7E+02 0.01 24.4 8.4 20 152-171 239-258 (825)
403 PF14157 YmzC: YmzC-like prote 27.8 93 0.002 18.7 2.8 16 132-147 41-56 (63)
404 KOG1240 Protein kinase contain 27.8 6.4E+02 0.014 25.4 13.1 30 152-182 1196-1225(1431)
405 PRK10115 protease 2; Provision 26.2 5.4E+02 0.012 24.0 16.0 111 54-181 131-254 (686)
406 PF15492 Nbas_N: Neuroblastoma 26.0 3.6E+02 0.0078 21.9 18.1 32 11-42 45-77 (282)
407 PRK14131 N-acetylneuraminic ac 26.0 4E+02 0.0086 22.4 16.0 15 203-217 338-352 (376)
408 PF13088 BNR_2: BNR repeat-lik 25.9 3.3E+02 0.0071 21.4 8.8 12 98-109 264-275 (275)
409 KOG3611 Semaphorins [Signal tr 25.9 4E+02 0.0087 25.1 7.8 63 14-77 412-490 (737)
410 KOG1188 WD40 repeat protein [G 25.6 4.1E+02 0.0088 22.3 7.8 53 130-183 48-103 (376)
411 PF06079 Apyrase: Apyrase; In 25.2 1.2E+02 0.0026 24.7 3.9 18 162-180 63-80 (291)
412 PF10584 Proteasome_A_N: Prote 24.9 18 0.00038 17.0 -0.5 7 158-164 7-13 (23)
413 PF05567 Neisseria_PilC: Neiss 24.7 1.6E+02 0.0035 24.5 4.7 11 131-141 230-240 (335)
414 KOG1517 Guanine nucleotide bin 24.3 7.1E+02 0.015 24.8 12.8 152 11-183 1210-1382(1387)
415 KOG4328 WD40 protein [Function 24.3 4.9E+02 0.011 22.8 13.4 113 50-180 370-493 (498)
416 COG4447 Uncharacterized protei 24.0 4.1E+02 0.0088 21.8 9.1 40 132-171 148-190 (339)
417 PLN02193 nitrile-specifier pro 23.7 5E+02 0.011 22.7 12.0 50 132-183 244-303 (470)
418 PF09910 DUF2139: Uncharacteri 23.2 4.3E+02 0.0094 21.8 12.3 70 54-144 110-185 (339)
419 KOG2041 WD40 repeat protein [G 22.6 6.6E+02 0.014 23.7 8.8 66 152-217 259-337 (1189)
420 PF14779 BBS1: Ciliary BBSome 22.3 3.3E+02 0.0072 21.8 5.8 53 22-76 197-255 (257)
421 PF01344 Kelch_1: Kelch motif; 22.3 1.4E+02 0.0031 15.9 4.6 19 130-148 26-44 (47)
422 KOG1645 RING-finger-containing 22.2 3.2E+02 0.0069 23.5 5.8 64 12-77 196-264 (463)
423 KOG0290 Conserved WD40 repeat- 21.7 4.6E+02 0.01 21.6 9.7 25 12-36 199-225 (364)
424 KOG4497 Uncharacterized conser 21.6 4.9E+02 0.011 21.9 11.6 61 96-172 94-154 (447)
425 PF15533 Toxin_54: Putative to 21.0 84 0.0018 19.1 1.7 15 201-215 37-51 (66)
426 COG1770 PtrB Protease II [Amin 20.5 6.9E+02 0.015 23.2 11.1 73 95-183 130-209 (682)
427 PF11161 DUF2944: Protein of u 20.3 3.9E+02 0.0085 20.2 5.8 51 166-218 77-128 (187)
428 PF09910 DUF2139: Uncharacteri 20.2 5E+02 0.011 21.5 7.9 66 70-149 77-148 (339)
429 PF04762 IKI3: IKI3 family; I 20.1 8.2E+02 0.018 23.9 19.8 55 22-77 89-148 (928)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=184.57 Aligned_cols=192 Identities=32% Similarity=0.598 Sum_probs=173.0
Q ss_pred cCCccccceEEccCC-CEEEEEeCCCcEEEEec-CC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccc
Q 026118 47 VGSQSLLGLTTTKEN-NVIIVCDSQQGLLKVSE-EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYL 123 (243)
Q Consensus 47 ~~~~~~~~i~~~~~g-~l~~v~~~~~gl~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~ 123 (243)
.+++|. ||+++.+| ++ |||+...||+.+++ .+ .+.+.....+.+....+++.++++|.+||+|++..|.......
T Consensus 113 ~CGRPL-Gl~f~~~ggdL-~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~ 190 (376)
T KOG1520|consen 113 LCGRPL-GIRFDKKGGDL-YVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVF 190 (376)
T ss_pred ccCCcc-eEEeccCCCeE-EEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEE
Confidence 468999 99999888 77 99999899999994 45 5666666778888899999999999999999988887766666
Q ss_pred cccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCce
Q 026118 124 DLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNV 203 (243)
Q Consensus 124 ~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 203 (243)
++.++..+|++++||+.+...+.+.+++..|||+++|+|+..+.++++...+|.+|-+.+...++.++|..+.+|+||||
T Consensus 191 a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNI 270 (376)
T KOG1520|consen 191 AALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNI 270 (376)
T ss_pred eeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcce
Confidence 77788889999999999888888899999999999999999999999999999999999988888899988899999999
Q ss_pred EECCCCCEEEEEecCCchhhhhhhcChHHHHHHhhcc
Q 026118 204 NLARDGSFWISIIKMDPKGIQALQSCKERKQAVGSIS 240 (243)
Q Consensus 204 ~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (243)
..+++|.+||+....++..+++...+|++|+++.++|
T Consensus 271 R~~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~~~~~ 307 (376)
T KOG1520|consen 271 RRDSTGHFWVALHSKRSTLWRLLMKYPWVRKFIAKLP 307 (376)
T ss_pred eECCCCCEEEEEecccchHHHhhhcChHHHHHHHhhc
Confidence 9999999999999999999999999999999988875
No 2
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.94 E-value=7.8e-25 Score=172.84 Aligned_cols=193 Identities=32% Similarity=0.464 Sum_probs=145.2
Q ss_pred cccEEEcC-CCcEEEEe-CCCcEEEEccCCc-eeEecccCCccccceEEc-cCCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118 12 PEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT-WEDWHQVGSQSLLGLTTT-KENNVIIVCDSQQGLLKVS-EEG-VTVLV 85 (243)
Q Consensus 12 p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~-~~~~~~~~~~~~~~i~~~-~~g~l~~v~~~~~gl~~~~-~~g-~~~~~ 85 (243)
||++++|+ +|.||+++ ..+.|+++++++. ...+... .|. +++++ ++|++ |++.. .++..++ .++ .+.+.
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~--~~~-G~~~~~~~g~l-~v~~~-~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP--GPN-GMAFDRPDGRL-YVADS-GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS--SEE-EEEEECTTSEE-EEEET-TCEEEEETTTTEEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC--CCc-eEEEEccCCEE-EEEEc-CceEEEecCCCcEEEEe
Confidence 67788886 89999988 7889999996554 4434432 378 99998 77777 99884 6777778 677 66666
Q ss_pred eccCCC-cccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCC
Q 026118 86 SQFNGS-QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDER 164 (243)
Q Consensus 86 ~~~~~~-~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~ 164 (243)
...... ....++++++|++|++|++++..... .....++||+++++ ++.+.+......||||++++|++
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~---------~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~ 146 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGA---------SGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGK 146 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCT---------TCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSS
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCcc---------ccccccceEEECCC-CeEEEEecCcccccceEECCcch
Confidence 544333 56889999999999999998752110 00111789999999 88888888889999999999999
Q ss_pred EEEEEEcCCCeEEEEEeecC--CCcceEEeccC--CCCCCCceEECCCCCEEEEEecCC
Q 026118 165 FLVVCESWKFRCVKHFLKVS--GRTDREIFIDN--LPGGPDNVNLARDGSFWISIIKMD 219 (243)
Q Consensus 165 ~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~--~~~~~~~i~~d~~G~lwv~~~~~~ 219 (243)
.||++++..++|++|+++.. .+...+.+... ..+.|+||++|++|+|||+.+.++
T Consensus 147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~ 205 (246)
T PF08450_consen 147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG 205 (246)
T ss_dssp EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT
T ss_pred heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC
Confidence 99999999999999999843 24555655432 224699999999999999988654
No 3
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=7.2e-24 Score=169.87 Aligned_cols=201 Identities=28% Similarity=0.436 Sum_probs=148.7
Q ss_pred eecccccCCcccEEEcCCCcEEEEe-CCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cC
Q 026118 3 KLGEGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EE 79 (243)
Q Consensus 3 ~~~~g~~~~p~~i~~d~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~ 79 (243)
+++|||+|.|+ .+.||.++ ..++|+++++ +|+...+..+...+. ++.++.+|.+ +++. .|+++++ .+
T Consensus 25 ~~gEgP~w~~~------~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~-~~~~d~~g~L-v~~~--~g~~~~~~~~ 94 (307)
T COG3386 25 TLGEGPVWDPD------RGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSS-GALIDAGGRL-IACE--HGVRLLDPDT 94 (307)
T ss_pred ccccCccCcCC------CCEEEEEeCCCCeEEEecCCcCceEEEECCCCccc-ceeecCCCeE-EEEc--cccEEEeccC
Confidence 46677777665 56677776 8899999996 588888887666666 7888888877 6664 5677777 55
Q ss_pred C-c-EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceE
Q 026118 80 G-V-TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGV 157 (243)
Q Consensus 80 g-~-~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi 157 (243)
+ . +.+.....+.+.+.+|+..++++|++||++++. +. .+.......|.||++++.++..+.+......||||
T Consensus 95 ~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGl 168 (307)
T COG3386 95 GGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGL 168 (307)
T ss_pred CceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCCCCEEEeecCcEEecCce
Confidence 5 4 666666666777899999999999999999872 11 12223345678999999744444444558999999
Q ss_pred EEcCCCCEEEEEEcCCCeEEEEEeec--CCCcce--EEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118 158 ALSEDERFLVVCESWKFRCVKHFLKV--SGRTDR--EIFIDNLPGGPDNVNLARDGSFWISIIKMD 219 (243)
Q Consensus 158 ~~~~dg~~l~v~~~~~~~i~~~~~~~--~~~~~~--~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~ 219 (243)
+||||+++||++++..+.|++|+.+. ...... ..+....++.|||+++|++|+||++...++
T Consensus 169 a~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g 234 (307)
T COG3386 169 AFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGG 234 (307)
T ss_pred EECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCC
Confidence 99999999999999999999998872 222222 333445678999999999999997554443
No 4
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.77 E-value=4.6e-17 Score=124.36 Aligned_cols=190 Identities=12% Similarity=0.115 Sum_probs=139.9
Q ss_pred eecccccCCcccEEEcCCCcEEEEeCCCcEEEEc-cCCceeEecccCCcc----ccceEEccCCCEEEEEeCCCcEE-EE
Q 026118 3 KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQS----LLGLTTTKENNVIIVCDSQQGLL-KV 76 (243)
Q Consensus 3 ~~~~g~~~~p~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~----~~~i~~~~~g~l~~v~~~~~gl~-~~ 76 (243)
++..|.=..|.+|.+++||..|+++....|.|++ ++..+++|..+...+ . ...||+.|++ |++.. .|.+ ++
T Consensus 97 ~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nle-t~vfD~~G~l-WFt~q-~G~yGrL 173 (353)
T COG4257 97 TYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLE-TAVFDPWGNL-WFTGQ-IGAYGRL 173 (353)
T ss_pred EEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCCCccc-ceeeCCCccE-EEeec-cccceec
Confidence 3334433889999999999999998766999999 488899887654333 3 5789999999 77764 4444 77
Q ss_pred e-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec--c-c
Q 026118 77 S-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--G-L 151 (243)
Q Consensus 77 ~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~--~-~ 151 (243)
| ..+ ++++.. +.+ -.+++||+.++|.+|++... .+.|.++|+.++..+.+.. . .
T Consensus 174 dPa~~~i~vfpa-PqG---~gpyGi~atpdGsvwyasla-----------------gnaiaridp~~~~aev~p~P~~~~ 232 (353)
T COG4257 174 DPARNVISVFPA-PQG---GGPYGICATPDGSVWYASLA-----------------GNAIARIDPFAGHAEVVPQPNALK 232 (353)
T ss_pred CcccCceeeecc-CCC---CCCcceEECCCCcEEEEecc-----------------ccceEEcccccCCcceecCCCccc
Confidence 7 445 554432 333 36889999999999998432 3468999999887666532 2 2
Q ss_pred cccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEec-cCCCCCCCceEECCCCCEEEEEecCCc
Q 026118 152 YFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFI-DNLPGGPDNVNLARDGSFWISIIKMDP 220 (243)
Q Consensus 152 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~d~~G~lwv~~~~~~~ 220 (243)
.....+..|+.|+ +|+++..+.++++|+++... +..+. ......|..|.+|.+|++|.+.+..+.
T Consensus 233 ~gsRriwsdpig~-~wittwg~g~l~rfdPs~~s---W~eypLPgs~arpys~rVD~~grVW~sea~aga 298 (353)
T COG4257 233 AGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTS---WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGA 298 (353)
T ss_pred ccccccccCccCc-EEEeccCCceeeEeCccccc---ceeeeCCCCCCCcceeeeccCCcEEeeccccCc
Confidence 3445688889998 99999999999999987632 33332 233447899999999999998877653
No 5
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.73 E-value=5e-16 Score=118.72 Aligned_cols=186 Identities=16% Similarity=0.179 Sum_probs=138.0
Q ss_pred CCcccEEEcCCCcEEEEe-CCCcEEEEc-cCCceeEecccC-CccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEE
Q 026118 10 NHPEDVSVDGNGVLYTAT-GDGWIKRMH-PNGTWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVL 84 (243)
Q Consensus 10 ~~p~~i~~d~~g~l~~~~-~~~~i~~~~-~~g~~~~~~~~~-~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~ 84 (243)
..|..++.++||.+|++. ..+.|-++| .+|+++.+.... ..|. +|..++||.. ||++...+|.+++ ++. ++.+
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph-giv~gpdg~~-Witd~~~aI~R~dpkt~evt~f 139 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH-GIVVGPDGSA-WITDTGLAIGRLDPKTLEVTRF 139 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCc-eEEECCCCCe-eEecCcceeEEecCcccceEEe
Confidence 357789999999999887 667788999 589998887654 4567 9999999999 9999878999999 566 6665
Q ss_pred EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcCCC
Q 026118 85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSEDE 163 (243)
Q Consensus 85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~dg 163 (243)
..... ......+...+|++|++||+... |.--++||.++.++.+. .....|+||+..|||
T Consensus 140 ~lp~~-~a~~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdG 200 (353)
T COG4257 140 PLPLE-HADANLETAVFDPWGNLWFTGQI------------------GAYGRLDPARNVISVFPAPQGGGPYGICATPDG 200 (353)
T ss_pred ecccc-cCCCcccceeeCCCccEEEeecc------------------ccceecCcccCceeeeccCCCCCCcceEECCCC
Confidence 43221 12234556789999999999543 22227888877666553 234678999999999
Q ss_pred CEEEEEEcCCCeEEEEEeecCCCcceEEecc--CCCCCCCceEECCCCCEEEEEecCCc
Q 026118 164 RFLVVCESWKFRCVKHFLKVSGRTDREIFID--NLPGGPDNVNLARDGSFWISIIKMDP 220 (243)
Q Consensus 164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~G~lwv~~~~~~~ 220 (243)
. +|+++-..+.|.++|+... ..+++.. .+......+-.|+.|++|++++..+.
T Consensus 201 s-vwyaslagnaiaridp~~~---~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~ 255 (353)
T COG4257 201 S-VWYASLAGNAIARIDPFAG---HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGS 255 (353)
T ss_pred c-EEEEeccccceEEcccccC---CcceecCCCcccccccccccCccCcEEEeccCCce
Confidence 9 9999888899999987642 3344432 11223456888999999999877653
No 6
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.72 E-value=3.9e-15 Score=137.78 Aligned_cols=196 Identities=20% Similarity=0.248 Sum_probs=137.7
Q ss_pred ccccCCcccEEEcC-CCcEEEEe-CCCcEEEEccCCceeEeccc---------------CCccccceEEccCCCEEEEEe
Q 026118 6 EGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWEDWHQV---------------GSQSLLGLTTTKENNVIIVCD 68 (243)
Q Consensus 6 ~g~~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~~~~~~~~---------------~~~~~~~i~~~~~g~l~~v~~ 68 (243)
..++..|.++++|+ +|+||+++ .+++|.+++.+|++...... ...|. +|+++++++.|||++
T Consensus 564 ~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~-GIavd~~gn~LYVaD 642 (1057)
T PLN02919 564 TSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQ-GLAYNAKKNLLYVAD 642 (1057)
T ss_pred cccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCc-EEEEeCCCCEEEEEe
Confidence 34689999999996 67899998 77889999987775433211 12478 999999888669998
Q ss_pred CCC-cEEEEe-cCC-cEEEEec------cCC------CcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCc
Q 026118 69 SQQ-GLLKVS-EEG-VTVLVSQ------FNG------SQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHG 132 (243)
Q Consensus 69 ~~~-gl~~~~-~~g-~~~~~~~------~~~------~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g 132 (243)
..+ .|.+++ .++ ++.+... ..+ ...+.|.++++++ +|.+|+++.. ..
T Consensus 643 t~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----------------~~ 705 (1057)
T PLN02919 643 TENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----------------QH 705 (1057)
T ss_pred CCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------------CC
Confidence 764 477788 566 5544321 111 1245788999999 6889999754 34
Q ss_pred eEEEEeCCCCeeEEeec---------------cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceE-------
Q 026118 133 VLLKYDPSTNQTSLVLD---------------GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDRE------- 190 (243)
Q Consensus 133 ~v~~~~~~~~~~~~~~~---------------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~------- 190 (243)
.|+++++.++....+.. ....|+||+++++|++|||++..+++|.+++++++......
T Consensus 706 ~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~ 785 (1057)
T PLN02919 706 QIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFS 785 (1057)
T ss_pred eEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccC
Confidence 68888887665543321 13468999999999999999999999999998643211000
Q ss_pred ----Eecc-------CCCCCCCceEECCCCCEEEEEecCC
Q 026118 191 ----IFID-------NLPGGPDNVNLARDGSFWISIIKMD 219 (243)
Q Consensus 191 ----~~~~-------~~~~~~~~i~~d~~G~lwv~~~~~~ 219 (243)
.+.. .....|.++++|++|+|||++..++
T Consensus 786 ~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~ 825 (1057)
T PLN02919 786 DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNH 825 (1057)
T ss_pred cccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCC
Confidence 0000 0112589999999999999987654
No 7
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.66 E-value=3.5e-14 Score=131.56 Aligned_cols=193 Identities=16% Similarity=0.207 Sum_probs=131.4
Q ss_pred cccCCcccEEEcCCC-cEEEEe-CCCcEEEEcc-CCceeEecc-----------------cCCccccceEEcc-CCCEEE
Q 026118 7 GIVNHPEDVSVDGNG-VLYTAT-GDGWIKRMHP-NGTWEDWHQ-----------------VGSQSLLGLTTTK-ENNVII 65 (243)
Q Consensus 7 g~~~~p~~i~~d~~g-~l~~~~-~~~~i~~~~~-~g~~~~~~~-----------------~~~~~~~~i~~~~-~g~l~~ 65 (243)
+.+..|.+|++|+++ .||+++ .++.|.+++. ++.+..+.. ....|. ++++++ +|++ |
T Consensus 621 a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~-gVa~dp~~g~L-y 698 (1057)
T PLN02919 621 ATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPW-DVCFEPVNEKV-Y 698 (1057)
T ss_pred cccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCe-EEEEecCCCeE-E
Confidence 457789999999866 589998 5678888884 455544321 023567 899998 5556 9
Q ss_pred EEeCC-CcEEEEe-cCC-cEEEEec-----cC-----CCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCC
Q 026118 66 VCDSQ-QGLLKVS-EEG-VTVLVSQ-----FN-----GSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPH 131 (243)
Q Consensus 66 v~~~~-~gl~~~~-~~g-~~~~~~~-----~~-----~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~ 131 (243)
|++.. +.|++++ .++ ...+... .. ......|.+|+++++|. +|+++.. +
T Consensus 699 Vad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----------------n 761 (1057)
T PLN02919 699 IAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----------------S 761 (1057)
T ss_pred EEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-----------------C
Confidence 99865 4577888 556 4333211 00 11235788999999986 9999754 3
Q ss_pred ceEEEEeCCCCeeEEeec----------------------cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcce
Q 026118 132 GVLLKYDPSTNQTSLVLD----------------------GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDR 189 (243)
Q Consensus 132 g~v~~~~~~~~~~~~~~~----------------------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~ 189 (243)
+.|.++|++++....+.. ....|.+++++++|+ +||++..+++|.+|+.++......
T Consensus 762 ~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~ti 840 (1057)
T PLN02919 762 SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTL 840 (1057)
T ss_pred CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEE
Confidence 578888887665432211 124688999999998 999999999999999875422211
Q ss_pred EEec----------cCCCCCCCceEECCCCCEEEEEecCC
Q 026118 190 EIFI----------DNLPGGPDNVNLARDGSFWISIIKMD 219 (243)
Q Consensus 190 ~~~~----------~~~~~~~~~i~~d~~G~lwv~~~~~~ 219 (243)
.... ......|.+|++|++|+|||++..++
T Consensus 841 aG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn 880 (1057)
T PLN02919 841 AGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS 880 (1057)
T ss_pred eccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence 1000 01123699999999999999986554
No 8
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.60 E-value=9.3e-13 Score=108.98 Aligned_cols=191 Identities=19% Similarity=0.232 Sum_probs=120.5
Q ss_pred CCcccEEEcCCC-cEEEEe-CCCcEEEEc--cCCceeEec--------------ccCCccccceEEccCCCEEEEEeCC-
Q 026118 10 NHPEDVSVDGNG-VLYTAT-GDGWIKRMH--PNGTWEDWH--------------QVGSQSLLGLTTTKENNVIIVCDSQ- 70 (243)
Q Consensus 10 ~~p~~i~~d~~g-~l~~~~-~~~~i~~~~--~~g~~~~~~--------------~~~~~~~~~i~~~~~g~l~~v~~~~- 70 (243)
..|+.|+++++| .||+++ ..+.|..++ .+|+..... .....|. .+.++|+|+++|+++.+
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H-~v~~~pdg~~v~v~dlG~ 165 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPH-QVVFSPDGRFVYVPDLGA 165 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEE-EEEE-TTSSEEEEEETTT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccce-eEEECCCCCEEEEEecCC
Confidence 578999999988 588888 566665554 556544321 1123456 88999999987998865
Q ss_pred CcEEEEe-c--CC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE
Q 026118 71 QGLLKVS-E--EG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS 145 (243)
Q Consensus 71 ~gl~~~~-~--~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~ 145 (243)
..|+.++ . .+ ..... ......-..|..|+++++|+ +|+.+.. ...-.++.++..++.++
T Consensus 166 D~v~~~~~~~~~~~l~~~~-~~~~~~G~GPRh~~f~pdg~~~Yv~~e~---------------s~~v~v~~~~~~~g~~~ 229 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVD-SIKVPPGSGPRHLAFSPDGKYAYVVNEL---------------SNTVSVFDYDPSDGSLT 229 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEE-EEECSTTSSEEEEEE-TTSSEEEEEETT---------------TTEEEEEEEETTTTEEE
T ss_pred CEEEEEEEeCCCceEEEee-ccccccCCCCcEEEEcCCcCEEEEecCC---------------CCcEEEEeecccCCcee
Confidence 3566666 3 23 33322 12223346789999999986 6776422 11223556664467665
Q ss_pred Eeec------c---ccccceEEEcCCCCEEEEEEcCCCeEEEEEeec--CCCcceEEeccCCCCCCCceEECCCCC-EEE
Q 026118 146 LVLD------G---LYFANGVALSEDERFLVVCESWKFRCVKHFLKV--SGRTDREIFIDNLPGGPDNVNLARDGS-FWI 213 (243)
Q Consensus 146 ~~~~------~---~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv 213 (243)
.+.. . ...+.+|+++|||++||+++...+.|..|+++. +.+...+.+. .....|.+|+++++|+ |||
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~s~~g~~l~V 308 (345)
T PF10282_consen 230 EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAFSPDGRYLYV 308 (345)
T ss_dssp EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE-TTSSEEEE
T ss_pred EEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEEeCCCCEEEE
Confidence 4321 1 125788999999999999999999999999953 3343333332 2234699999999998 676
Q ss_pred EEecC
Q 026118 214 SIIKM 218 (243)
Q Consensus 214 ~~~~~ 218 (243)
+....
T Consensus 309 a~~~s 313 (345)
T PF10282_consen 309 ANQDS 313 (345)
T ss_dssp EETTT
T ss_pred EecCC
Confidence 65443
No 9
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.59 E-value=1.3e-13 Score=108.81 Aligned_cols=143 Identities=22% Similarity=0.367 Sum_probs=102.0
Q ss_pred ccCCcccEEEcCCCcEEEEeC-C--------CcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEe
Q 026118 8 IVNHPEDVSVDGNGVLYTATG-D--------GWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS 77 (243)
Q Consensus 8 ~~~~p~~i~~d~~g~l~~~~~-~--------~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~ 77 (243)
++..|..+++|++|+||+++. . ++|+++++++++.........|+ ||+++++|+.||+++.. +.|++++
T Consensus 84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pN-Gi~~s~dg~~lyv~ds~~~~i~~~~ 162 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPN-GIAFSPDGKTLYVADSFNGRIWRFD 162 (246)
T ss_dssp CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEE-EEEEETTSSEEEEEETTTTEEEEEE
T ss_pred ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCccccc-ceEECCcchheeecccccceeEEEe
Confidence 467899999999999999972 1 67999998777766655556788 99999999877988765 4588888
Q ss_pred -c-CCc-----EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-eec
Q 026118 78 -E-EGV-----TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VLD 149 (243)
Q Consensus 78 -~-~g~-----~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-~~~ 149 (243)
. .+. +.+.. ... ....|.+|++|++|+||++... .++|++++++ |++.. +..
T Consensus 163 ~~~~~~~~~~~~~~~~-~~~-~~g~pDG~~vD~~G~l~va~~~-----------------~~~I~~~~p~-G~~~~~i~~ 222 (246)
T PF08450_consen 163 LDADGGELSNRRVFID-FPG-GPGYPDGLAVDSDGNLWVADWG-----------------GGRIVVFDPD-GKLLREIEL 222 (246)
T ss_dssp EETTTCCEEEEEEEEE--SS-SSCEEEEEEEBTTS-EEEEEET-----------------TTEEEEEETT-SCEEEEEE-
T ss_pred ccccccceeeeeeEEE-cCC-CCcCCCcceEcCCCCEEEEEcC-----------------CCEEEEECCC-ccEEEEEcC
Confidence 3 232 12211 111 1135889999999999999532 4689999999 65444 443
Q ss_pred cccccceEEE-cCCCCEEEEEEc
Q 026118 150 GLYFANGVAL-SEDERFLVVCES 171 (243)
Q Consensus 150 ~~~~~~gi~~-~~dg~~l~v~~~ 171 (243)
....|..++| -++.+.|||+..
T Consensus 223 p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 223 PVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp SSSSEEEEEEESTTSSEEEEEEB
T ss_pred CCCCEEEEEEECCCCCEEEEEeC
Confidence 4468889999 467788999964
No 10
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.58 E-value=1.7e-14 Score=93.76 Aligned_cols=87 Identities=48% Similarity=0.872 Sum_probs=70.3
Q ss_pred ccEEEcCC-CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCe
Q 026118 97 NDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFR 175 (243)
Q Consensus 97 ~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~ 175 (243)
++++++++ |.+||++++..|....+...+.++..+|+|++|||.+++.+.+..++..|||+++++|+..++|+++...+
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 47889998 99999999988988877778888899999999999999999999999999999999999999999999999
Q ss_pred EEEEEeec
Q 026118 176 CVKHFLKV 183 (243)
Q Consensus 176 i~~~~~~~ 183 (243)
|.+|-+.+
T Consensus 81 i~rywl~G 88 (89)
T PF03088_consen 81 ILRYWLKG 88 (89)
T ss_dssp EEEEESSS
T ss_pred EEEEEEeC
Confidence 99997665
No 11
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.56 E-value=3.2e-13 Score=101.29 Aligned_cols=190 Identities=14% Similarity=0.147 Sum_probs=118.7
Q ss_pred CCc-EEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCC--CEEEEEeCCCc--EEEEe-cCC-cEEEEe---cc
Q 026118 20 NGV-LYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKEN--NVIIVCDSQQG--LLKVS-EEG-VTVLVS---QF 88 (243)
Q Consensus 20 ~g~-l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g--~l~~v~~~~~g--l~~~~-~~g-~~~~~~---~~ 88 (243)
.+. +|+--..+.|+|+| ...++.+.... ..|..+.++--.| .. +++..+.. +..++ ... ...+.+ ..
T Consensus 26 ~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie-~p~~ag~ilpv~~~~q~-~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~ 103 (310)
T KOG4499|consen 26 RQSLLYVDIEAGEVHRYDIEQNKVYRAKIE-GPPSAGFILPVEGGPQE-FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQ 103 (310)
T ss_pred cceEEEEEeccCceehhhhhhhheEEEEEe-cCcceeEEEEecCCCce-EEEeecceEEEEEcccccceeeeeeeccccC
Confidence 444 55555889999998 33444333222 2222244443222 12 44444443 44444 233 333332 22
Q ss_pred CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEE
Q 026118 89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVV 168 (243)
Q Consensus 89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v 168 (243)
.....+..++-.+||+|++|.+++... +. .-....+.||+.-+. ++++.+......+|||+||.|.+.+|+
T Consensus 104 ~d~kknR~NDgkvdP~Gryy~GtMad~-~~-------~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~ 174 (310)
T KOG4499|consen 104 PDRKKNRLNDGKVDPDGRYYGGTMADF-GD-------DLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYY 174 (310)
T ss_pred chHHhcccccCccCCCCceeeeeeccc-cc-------cccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEE
Confidence 222244556668999999999987521 10 111234556665554 888888888999999999999999999
Q ss_pred EEcCCCeEEEEE--eecCCCcceEEecc------CCCCCCCceEECCCCCEEEEEecCCc
Q 026118 169 CESWKFRCVKHF--LKVSGRTDREIFID------NLPGGPDNVNLARDGSFWISIIKMDP 220 (243)
Q Consensus 169 ~~~~~~~i~~~~--~~~~~~~~~~~~~~------~~~~~~~~i~~d~~G~lwv~~~~~~~ 220 (243)
.++.+-.|..|+ ..++.+.+.+.+.+ ...-.|+|+++|.+|+|||+++.++.
T Consensus 175 iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~ 234 (310)
T KOG4499|consen 175 IDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT 234 (310)
T ss_pred EccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcE
Confidence 999999995555 55665665555433 12347999999999999999998864
No 12
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.56 E-value=7.4e-13 Score=110.38 Aligned_cols=173 Identities=21% Similarity=0.281 Sum_probs=117.0
Q ss_pred ceecccc-cCCcccEEEcCCCcEEEEeC------------C-CcEEEEc-c--CCce---eEecccCCccccceEEccCC
Q 026118 2 IKLGEGI-VNHPEDVSVDGNGVLYTATG------------D-GWIKRMH-P--NGTW---EDWHQVGSQSLLGLTTTKEN 61 (243)
Q Consensus 2 ~~~~~g~-~~~p~~i~~d~~g~l~~~~~------------~-~~i~~~~-~--~g~~---~~~~~~~~~~~~~i~~~~~g 61 (243)
+++++.| +..|..|++|++|+||+++. . ++|+++. . +|+. +.+......|. +|++.++|
T Consensus 5 ~l~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~-Gi~~~~~G 83 (367)
T TIGR02604 5 TLFAAEPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVT-GLAVAVGG 83 (367)
T ss_pred EEEECCCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCcc-ceeEecCC
Confidence 4566664 68999999999999999962 1 3788887 2 4553 44444445678 99999888
Q ss_pred CEEEEEeCCCcEEEEe-cC--C-----cEEEEeccCCC---cccCCccEEEcCCCcEEEEeCCCCCCcccc--ccccccc
Q 026118 62 NVIIVCDSQQGLLKVS-EE--G-----VTVLVSQFNGS---QLRFANDVIEASDGSLYFTVSSTKFTPAEY--YLDLVSG 128 (243)
Q Consensus 62 ~l~~v~~~~~gl~~~~-~~--g-----~~~~~~~~~~~---~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~--~~~~~~~ 128 (243)
+ ||+. ...|+++. .+ + .+.+....... ....++++++++||.||++........... ..+....
T Consensus 84 -l-yV~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~ 160 (367)
T TIGR02604 84 -V-YVAT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQ 160 (367)
T ss_pred -E-EEeC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccc
Confidence 7 8986 45788884 32 2 23344333222 245688999999999999875321100000 0001112
Q ss_pred CCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEE
Q 026118 129 EPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKH 179 (243)
Q Consensus 129 ~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~ 179 (243)
...+.|+++++++++++.+..+...|+|++++++|+ +|+++.......++
T Consensus 161 ~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i 210 (367)
T TIGR02604 161 GLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRV 210 (367)
T ss_pred ccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeEE
Confidence 234789999999989998888889999999999998 89987654444443
No 13
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.53 E-value=7.6e-12 Score=103.56 Aligned_cols=193 Identities=17% Similarity=0.234 Sum_probs=122.2
Q ss_pred cCCcccEEEcCCC-cEEEEeC----CCcEEEEc--cC-CceeEec---ccCCccccceEEccCCCEEEEEeCCCc-EEEE
Q 026118 9 VNHPEDVSVDGNG-VLYTATG----DGWIKRMH--PN-GTWEDWH---QVGSQSLLGLTTTKENNVIIVCDSQQG-LLKV 76 (243)
Q Consensus 9 ~~~p~~i~~d~~g-~l~~~~~----~~~i~~~~--~~-g~~~~~~---~~~~~~~~~i~~~~~g~l~~v~~~~~g-l~~~ 76 (243)
..+|..|++++++ .||++.. .+.|..+. ++ ++.+... .....|. .+++++++++||++++..| +..+
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~-~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC-HIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE-EEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE-EEEEecCCCEEEEEEccCCeEEEE
Confidence 4789999999866 6898874 45675554 55 6655432 2345677 8999999998899997655 4444
Q ss_pred e--cCC-cEEEEec-------cC--CCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEE--EeCCC
Q 026118 77 S--EEG-VTVLVSQ-------FN--GSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLK--YDPST 141 (243)
Q Consensus 77 ~--~~g-~~~~~~~-------~~--~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~--~~~~~ 141 (243)
+ .+| ....... +. -+....+.++.++|+|+ +|+++.+ ...|+. ++..+
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-----------------~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-----------------ADRVYVYDIDDDT 177 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-----------------TTEEEEEEE-TTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCC
Confidence 4 446 3322110 11 12235678899999987 7777654 234554 55444
Q ss_pred CeeEEe----eccccccceEEEcCCCCEEEEEEcCCCeEEEEEee--cCCCcceEEeccC---CC--CCCCceEECCCCC
Q 026118 142 NQTSLV----LDGLYFANGVALSEDERFLVVCESWKFRCVKHFLK--VSGRTDREIFIDN---LP--GGPDNVNLARDGS 210 (243)
Q Consensus 142 ~~~~~~----~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~--~~~~~~~~~~~~~---~~--~~~~~i~~d~~G~ 210 (243)
+++... ......|..|+|+++++++|+.+..++.|..|+.+ .+.+...+.+... .. ..+.+|+++++|+
T Consensus 178 ~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~ 257 (345)
T PF10282_consen 178 GKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR 257 (345)
T ss_dssp -TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS
T ss_pred ceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC
Confidence 445442 23446788999999999999999999999999988 3333333333211 11 1577899999998
Q ss_pred -EEEEEecCC
Q 026118 211 -FWISIIKMD 219 (243)
Q Consensus 211 -lwv~~~~~~ 219 (243)
||++.....
T Consensus 258 ~lyvsnr~~~ 267 (345)
T PF10282_consen 258 FLYVSNRGSN 267 (345)
T ss_dssp EEEEEECTTT
T ss_pred EEEEEeccCC
Confidence 788765543
No 14
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.45 E-value=5.8e-11 Score=97.79 Aligned_cols=187 Identities=11% Similarity=0.111 Sum_probs=114.6
Q ss_pred CcccEEEcCCCc-EEEEe-CCCcEEEEc--cCCceeE-e--cccCCccccceEEccCCCEEEEEeCCC-cEEEEe-cC-C
Q 026118 11 HPEDVSVDGNGV-LYTAT-GDGWIKRMH--PNGTWED-W--HQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS-EE-G 80 (243)
Q Consensus 11 ~p~~i~~d~~g~-l~~~~-~~~~i~~~~--~~g~~~~-~--~~~~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~-~~-g 80 (243)
.|..|+++++|+ ||++. .++.|..++ .++.... . ......|. +++++++|+++|+++... .|..++ .+ +
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~-~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCH-SANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCccc-EeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 689999999885 88877 467777776 3443211 1 11123466 889999999878888764 466776 33 4
Q ss_pred -cEEE-EeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceE--EEEeCCCCeeEEeec------
Q 026118 81 -VTVL-VSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVL--LKYDPSTNQTSLVLD------ 149 (243)
Q Consensus 81 -~~~~-~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v--~~~~~~~~~~~~~~~------ 149 (243)
.... ...........|.+++++|+|+ +|+++.. .+.| |.++..+++++.+..
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----------------~~~v~v~~~~~~~~~~~~~~~~~~~p~ 222 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----------------NSSVDVWQLKDPHGEIECVQTLDMMPA 222 (330)
T ss_pred cccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCCCCEEEEEEEecCCC
Confidence 3211 0101111124688999999987 5666432 2344 455543455443221
Q ss_pred ---cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc-CCCCCCCceEECCCCC-EEEEEe
Q 026118 150 ---GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID-NLPGGPDNVNLARDGS-FWISII 216 (243)
Q Consensus 150 ---~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~G~-lwv~~~ 216 (243)
...++..++++|+|++||+++...+.|..|+++.... ..+.... .....|.+++++++|+ ||++..
T Consensus 223 ~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~-~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 223 DFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS-VLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred cCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC-eEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence 1123456899999999999988788999998864321 1111111 1123688999999997 777664
No 15
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=1.5e-10 Score=91.97 Aligned_cols=193 Identities=17% Similarity=0.199 Sum_probs=125.0
Q ss_pred CCcccEEEcCCCc-EEEEeC-CCcEEEE--ccCCceeEec----cc---------CCccccceEEccCCCEEEEEeCC-C
Q 026118 10 NHPEDVSVDGNGV-LYTATG-DGWIKRM--HPNGTWEDWH----QV---------GSQSLLGLTTTKENNVIIVCDSQ-Q 71 (243)
Q Consensus 10 ~~p~~i~~d~~g~-l~~~~~-~~~i~~~--~~~g~~~~~~----~~---------~~~~~~~i~~~~~g~l~~v~~~~-~ 71 (243)
..|..+++|++|+ |++++. .+.|.++ ..+|.+.... .. ...+. ...++|++++|++.+.+ +
T Consensus 89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H-~a~~tP~~~~l~v~DLG~D 167 (346)
T COG2706 89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVH-SANFTPDGRYLVVPDLGTD 167 (346)
T ss_pred CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccc-eeeeCCCCCEEEEeecCCc
Confidence 4568999999995 677774 4444433 3456433221 00 11234 66789999987888865 5
Q ss_pred cEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcE-EEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee
Q 026118 72 GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSL-YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL 148 (243)
Q Consensus 72 gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l-~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~ 148 (243)
.++.|+ .+| ...... ..-.+-.+|..|++.|+|++ |+.+- -...-.+|.|++..++++.+.
T Consensus 168 ri~~y~~~dg~L~~~~~-~~v~~G~GPRHi~FHpn~k~aY~v~E---------------L~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 168 RIFLYDLDDGKLTPADP-AEVKPGAGPRHIVFHPNGKYAYLVNE---------------LNSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred eEEEEEcccCccccccc-cccCCCCCcceEEEcCCCcEEEEEec---------------cCCEEEEEEEcCCCceEEEee
Confidence 688887 666 433222 11134467899999999984 44421 112235788888778877653
Q ss_pred c---------cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecC--CCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118 149 D---------GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVS--GRTDREIFIDNLPGGPDNVNLARDGSFWISIIK 217 (243)
Q Consensus 149 ~---------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 217 (243)
. +..+...|.+++||++||+++.+-++|..|.++.. .+.-.... ....-.|..+.+++.|++.++.++
T Consensus 232 ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~-~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 232 TIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT-PTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred eeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe-ccCCcCCccceeCCCCCEEEEEcc
Confidence 2 22345679999999999999999899998888743 22222222 122335999999999998888777
Q ss_pred CCc
Q 026118 218 MDP 220 (243)
Q Consensus 218 ~~~ 220 (243)
.+.
T Consensus 311 ~sd 313 (346)
T COG2706 311 KSD 313 (346)
T ss_pred CCC
Confidence 653
No 16
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.41 E-value=2.2e-10 Score=94.40 Aligned_cols=186 Identities=8% Similarity=0.057 Sum_probs=117.4
Q ss_pred CCcccEEEcCCCc-EEEEe-CCCcEEEEc--cCCceeEec--ccCCccccceEEccCCCEEEEEeCCC-cEEEEe--cCC
Q 026118 10 NHPEDVSVDGNGV-LYTAT-GDGWIKRMH--PNGTWEDWH--QVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS--EEG 80 (243)
Q Consensus 10 ~~p~~i~~d~~g~-l~~~~-~~~~i~~~~--~~g~~~~~~--~~~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~--~~g 80 (243)
..|..|+++++|. ||++. ..+.|..++ .++++.... .....|. .++++++|+++|++.... .+..++ .++
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 4688999999885 88886 567786555 355543322 2234677 899999999879888644 466666 344
Q ss_pred -c-EEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCC-CeeEE-----e-ecc
Q 026118 81 -V-TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-NQTSL-----V-LDG 150 (243)
Q Consensus 81 -~-~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~-~~~~~-----~-~~~ 150 (243)
. +.+.. ..+ ...+.+++++|+|+ +|+++.. .+.|..++.++ +.+.. . ...
T Consensus 114 ~~~~~~~~-~~~--~~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~~~g~l~~~~~~~~~~~~ 173 (330)
T PRK11028 114 IPVAPIQI-IEG--LEGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLSDDGHLVAQEPAEVTTVE 173 (330)
T ss_pred CCCCceee-ccC--CCcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEECCCCcccccCCCceecCC
Confidence 2 22221 111 24577888999986 5566533 34566666543 33321 1 122
Q ss_pred ccccceEEEcCCCCEEEEEEcCCCeEEEEEeec--CCCcceEEecc---C--CCCCCCceEECCCCC-EEEEEe
Q 026118 151 LYFANGVALSEDERFLVVCESWKFRCVKHFLKV--SGRTDREIFID---N--LPGGPDNVNLARDGS-FWISII 216 (243)
Q Consensus 151 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~--~~~~~~~~~~~---~--~~~~~~~i~~d~~G~-lwv~~~ 216 (243)
...|..++|+|+|+++|+++..++.|..|+++. +.+...+.+.. . .+..+..++++++|+ ||++..
T Consensus 174 g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~ 247 (330)
T PRK11028 174 GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR 247 (330)
T ss_pred CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC
Confidence 356889999999999999998889999999873 22222222111 0 112344688999998 788743
No 17
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=8.1e-11 Score=94.88 Aligned_cols=146 Identities=17% Similarity=0.276 Sum_probs=101.5
Q ss_pred ccCCcccEEEcCCCcEEEEeCC------------CcEEEEccCCceeEeccc-CCccccceEEccCCCEEEEEeCC-CcE
Q 026118 8 IVNHPEDVSVDGNGVLYTATGD------------GWIKRMHPNGTWEDWHQV-GSQSLLGLTTTKENNVIIVCDSQ-QGL 73 (243)
Q Consensus 8 ~~~~p~~i~~d~~g~l~~~~~~------------~~i~~~~~~g~~~~~~~~-~~~~~~~i~~~~~g~l~~v~~~~-~gl 73 (243)
+..+|..+.++++|++|+++.. |.||++++.+...+.... ...++ ||++++||+.||+++.. ..+
T Consensus 109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~N-Gla~SpDg~tly~aDT~~~~i 187 (307)
T COG3386 109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPN-GLAFSPDGKTLYVADTPANRI 187 (307)
T ss_pred CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecC-ceEECCCCCEEEEEeCCCCeE
Confidence 4578889999999999999833 459999987776665543 45678 99999999887999875 468
Q ss_pred EEEe-c--CC----cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE
Q 026118 74 LKVS-E--EG----VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL 146 (243)
Q Consensus 74 ~~~~-~--~g----~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~ 146 (243)
++++ . ++ .+.... . ......|.++++|.+|++|++... ..++|.+++|+ |++..
T Consensus 188 ~r~~~d~~~g~~~~~~~~~~-~-~~~~G~PDG~~vDadG~lw~~a~~----------------~g~~v~~~~pd-G~l~~ 248 (307)
T COG3386 188 HRYDLDPATGPIGGRRGFVD-F-DEEPGLPDGMAVDADGNLWVAAVW----------------GGGRVVRFNPD-GKLLG 248 (307)
T ss_pred EEEecCcccCccCCcceEEE-c-cCCCCCCCceEEeCCCCEEEeccc----------------CCceEEEECCC-CcEEE
Confidence 8887 3 23 111111 1 112357889999999999974211 12389999999 55444
Q ss_pred -eeccccccceEEE-cCCCCEEEEEEcCC
Q 026118 147 -VLDGLYFANGVAL-SEDERFLVVCESWK 173 (243)
Q Consensus 147 -~~~~~~~~~gi~~-~~dg~~l~v~~~~~ 173 (243)
+.-....+..++| .++.++|||+....
T Consensus 249 ~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 249 EIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 3333356666777 45678899997654
No 18
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.35 E-value=1.4e-10 Score=95.33 Aligned_cols=156 Identities=20% Similarity=0.287 Sum_probs=88.2
Q ss_pred cCCcccEEEcCCCcEEEEeCCCcEEEEccCCce-eEecc-------cCCccccceEEccC----CCEEEEEeCC------
Q 026118 9 VNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTW-EDWHQ-------VGSQSLLGLTTTKE----NNVIIVCDSQ------ 70 (243)
Q Consensus 9 ~~~p~~i~~d~~g~l~~~~~~~~i~~~~~~g~~-~~~~~-------~~~~~~~~i~~~~~----g~l~~v~~~~------ 70 (243)
+..|.+|++.+||+||++...|.|++++.++.. ..+.. ...... +|+++++ +.+ |++...
T Consensus 1 L~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gll-gia~~p~f~~n~~l-Yv~~t~~~~~~~ 78 (331)
T PF07995_consen 1 LNNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLL-GIAFHPDFASNGYL-YVYYTNADEDGG 78 (331)
T ss_dssp ESSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEE-EEEE-TTCCCC-EE-EEEEEEE-TSSS
T ss_pred CCCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcc-cceeccccCCCCEE-EEEEEcccCCCC
Confidence 468999999999999999999999999866654 22211 112235 8899984 666 887652
Q ss_pred ---CcEEEEe-cCC------cEEEEeccCC--CcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEe
Q 026118 71 ---QGLLKVS-EEG------VTVLVSQFNG--SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYD 138 (243)
Q Consensus 71 ---~gl~~~~-~~g------~~~~~~~~~~--~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~ 138 (243)
..|.++. ..+ .+.+...... ........|+++|||.||++.-..... ..........+.|+|++
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~----~~~~~~~~~~G~ilri~ 154 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGND----DNAQDPNSLRGKILRID 154 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTG----GGGCSTTSSTTEEEEEE
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCc----ccccccccccceEEEec
Confidence 1477776 322 2223222111 222344569999999999986432110 00111123457788888
Q ss_pred CCCC-------------eeEEeeccccccceEEEcCC-CCEEEEEEc
Q 026118 139 PSTN-------------QTSLVLDGLYFANGVALSED-ERFLVVCES 171 (243)
Q Consensus 139 ~~~~-------------~~~~~~~~~~~~~gi~~~~d-g~~l~v~~~ 171 (243)
+++. ..+.++.++..|.+++|++. |+ ||+++.
T Consensus 155 ~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~-l~~~d~ 200 (331)
T PF07995_consen 155 PDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGR-LWAADN 200 (331)
T ss_dssp TTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTE-EEEEEE
T ss_pred ccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCc-EEEEcc
Confidence 7732 12233445556666777766 44 666653
No 19
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.1e-09 Score=87.05 Aligned_cols=193 Identities=11% Similarity=0.167 Sum_probs=123.1
Q ss_pred cCCcccEEEcCCC-cEEEEeC---CCcE--EEEcc-CCceeEecc--cCCc-cccceEEccCCCEEEEEeCCCcEEEE-e
Q 026118 9 VNHPEDVSVDGNG-VLYTATG---DGWI--KRMHP-NGTWEDWHQ--VGSQ-SLLGLTTTKENNVIIVCDSQQGLLKV-S 77 (243)
Q Consensus 9 ~~~p~~i~~d~~g-~l~~~~~---~~~i--~~~~~-~g~~~~~~~--~~~~-~~~~i~~~~~g~l~~v~~~~~gl~~~-~ 77 (243)
+.+|.-|++++++ .||++.. .++| |++|+ +|+...... ..+. |. .+++|++|++++++++..|-+.+ .
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~-yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC-YVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe-EEEECCCCCEEEEEEccCceEEEEE
Confidence 6789999999988 6998872 4666 56664 477665432 2233 46 89999999988999977663333 2
Q ss_pred --cCC-cEEE---EeccCC-----CcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE
Q 026118 78 --EEG-VTVL---VSQFNG-----SQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS 145 (243)
Q Consensus 78 --~~g-~~~~---~~~~~~-----~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~ 145 (243)
.+| .... ...... +....+....++|+|+ +++.|-+ ..+|+.|+.+.|.+.
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-----------------~Dri~~y~~~dg~L~ 180 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-----------------TDRIFLYDLDDGKLT 180 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-----------------CceEEEEEcccCccc
Confidence 456 3221 111111 1122355667899996 5555433 236666666667776
Q ss_pred Eee----ccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec--CCCcceEEeccCCC-----CCCCceEECCCCC-EEE
Q 026118 146 LVL----DGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV--SGRTDREIFIDNLP-----GGPDNVNLARDGS-FWI 213 (243)
Q Consensus 146 ~~~----~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~-----~~~~~i~~d~~G~-lwv 213 (243)
+.. .....|.=|+|+|+++..|+....+++|..+..++ +.+...+.....+. .....|.++++|+ ||+
T Consensus 181 ~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYa 260 (346)
T COG2706 181 PADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYA 260 (346)
T ss_pred cccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEE
Confidence 542 33456777999999999999999999999988876 33444444322111 1334489999999 566
Q ss_pred EEecCCc
Q 026118 214 SIIKMDP 220 (243)
Q Consensus 214 ~~~~~~~ 220 (243)
++ .+..
T Consensus 261 sN-Rg~d 266 (346)
T COG2706 261 SN-RGHD 266 (346)
T ss_pred ec-CCCC
Confidence 54 4433
No 20
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=1.4e-08 Score=85.15 Aligned_cols=185 Identities=17% Similarity=0.188 Sum_probs=127.4
Q ss_pred cCCcccEEEcCCCc-EEEEe-CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCC---CcEEEEe-cCCc
Q 026118 9 VNHPEDVSVDGNGV-LYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVS-EEGV 81 (243)
Q Consensus 9 ~~~p~~i~~d~~g~-l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~---~gl~~~~-~~g~ 81 (243)
...|.++++.+.|. +|+.+ ..+.|..++ ...+..........|. +++++++++.+|+++.. .-+..+| .++
T Consensus 73 ~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~-~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~- 150 (381)
T COG3391 73 GVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPV-GLAVDPDGKYVYVANAGNGNNTVSVIDAATN- 150 (381)
T ss_pred CccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCc-eEEECCCCCEEEEEecccCCceEEEEeCCCC-
Confidence 36789999998775 99988 557889998 3344444444445788 99999999777999973 3477777 444
Q ss_pred EEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-----eeccccccc
Q 026118 82 TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-----VLDGLYFAN 155 (243)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-----~~~~~~~~~ 155 (243)
+.+...+.+. .|.+++++|+|. +|+++.. .+.|..+|.++..+.+ .......|.
T Consensus 151 ~~~~~~~vG~---~P~~~a~~p~g~~vyv~~~~-----------------~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~ 210 (381)
T COG3391 151 KVTATIPVGN---TPTGVAVDPDGNKVYVTNSD-----------------DNTVSVIDTSGNSVVRGSVGSLVGVGTGPA 210 (381)
T ss_pred eEEEEEecCC---CcceEEECCCCCeEEEEecC-----------------CCeEEEEeCCCcceeccccccccccCCCCc
Confidence 2222222222 457899999997 9998733 4689999988665553 122346789
Q ss_pred eEEEcCCCCEEEEEEcCC--CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEec
Q 026118 156 GVALSEDERFLVVCESWK--FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIK 217 (243)
Q Consensus 156 gi~~~~dg~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~ 217 (243)
+++++++|+.+|+++..+ +.+.+++........... ..... .|.+++.+++|. +|+....
T Consensus 211 ~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~-~~~~~-~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 211 GIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL-PVGSG-APRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred eEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc-ccccC-CCCceeECCCCCEEEEEecC
Confidence 999999999999998876 588888876532222111 11223 688899999998 6666444
No 21
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.17 E-value=5.3e-08 Score=78.41 Aligned_cols=186 Identities=12% Similarity=0.102 Sum_probs=113.8
Q ss_pred CCcccEEEcCCCc-EEEEe-CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEe-cCCcEEE
Q 026118 10 NHPEDVSVDGNGV-LYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-EEGVTVL 84 (243)
Q Consensus 10 ~~p~~i~~d~~g~-l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~~g~~~~ 84 (243)
..|.+++++++|. +|++. .++.|+.++ .+++..........+. .++++++|+.+|++... +.+..++ .++ +.+
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~l~~~d~~~~-~~~ 108 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE-LFALHPNGKILYIANEDDNLVTVIDIETR-KVL 108 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc-EEEECCCCCEEEEEcCCCCeEEEEECCCC-eEE
Confidence 3577899999885 66665 667888898 4455443222223455 78899999875777543 4577777 444 111
Q ss_pred EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCC
Q 026118 85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDER 164 (243)
Q Consensus 85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~ 164 (243)
.. ... ...+.+++++++|.++++... ....++.++..+++..........+..++++++++
T Consensus 109 ~~-~~~--~~~~~~~~~~~dg~~l~~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 169 (300)
T TIGR03866 109 AE-IPV--GVEPEGMAVSPDGKIVVNTSE----------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGK 169 (300)
T ss_pred eE-eeC--CCCcceEEECCCCCEEEEEec----------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCC
Confidence 11 111 123568899999987776432 11245667887665543322234577899999999
Q ss_pred EEEEEEcCCCeEEEEEeecCCCcceEEecc-C---CCCCCCceEECCCCC-EEEEEe
Q 026118 165 FLVVCESWKFRCVKHFLKVSGRTDREIFID-N---LPGGPDNVNLARDGS-FWISII 216 (243)
Q Consensus 165 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~---~~~~~~~i~~d~~G~-lwv~~~ 216 (243)
.||++...++.|..|+...........+.. . ....|.+++++++|+ +|++..
T Consensus 170 ~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 170 ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG 226 (300)
T ss_pred EEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC
Confidence 888876667889999987542211111110 0 112356788999998 466543
No 22
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.15 E-value=3.7e-09 Score=88.28 Aligned_cols=141 Identities=12% Similarity=0.107 Sum_probs=93.6
Q ss_pred CccccceEEccCCCEEEEEeC------------C-CcEEEEe-c--CC-cEEEEeccCCCcccCCccEEEcCCCcEEEEe
Q 026118 49 SQSLLGLTTTKENNVIIVCDS------------Q-QGLLKVS-E--EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTV 111 (243)
Q Consensus 49 ~~~~~~i~~~~~g~l~~v~~~------------~-~gl~~~~-~--~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~ 111 (243)
.+|. +|++|++|++ ||+.. . ..|+++. . +| ......-.. ....|.+|++.++| +|+++
T Consensus 14 ~~P~-~ia~d~~G~l-~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~--~l~~p~Gi~~~~~G-lyV~~ 88 (367)
T TIGR02604 14 RNPI-AVCFDERGRL-WVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE--ELSMVTGLAVAVGG-VYVAT 88 (367)
T ss_pred CCCc-eeeECCCCCE-EEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec--CCCCccceeEecCC-EEEeC
Confidence 5688 9999999999 99963 1 2577776 3 34 322111111 24578899999999 99984
Q ss_pred CCCCCCcccccccccccCCCceEEEE-eCCC-----CeeEEeecc--------ccccceEEEcCCCCEEEEEEcC-----
Q 026118 112 SSTKFTPAEYYLDLVSGEPHGVLLKY-DPST-----NQTSLVLDG--------LYFANGVALSEDERFLVVCESW----- 172 (243)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~v~~~-~~~~-----~~~~~~~~~--------~~~~~gi~~~~dg~~l~v~~~~----- 172 (243)
. ..|+++ +.+. ++.+.+... ...++++++.+||+ ||++...
T Consensus 89 ~-------------------~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~ 148 (367)
T TIGR02604 89 P-------------------PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASK 148 (367)
T ss_pred C-------------------CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCce
Confidence 3 268777 3321 133334322 23478999999998 9997542
Q ss_pred --------------CCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecC
Q 026118 173 --------------KFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKM 218 (243)
Q Consensus 173 --------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~ 218 (243)
.+.|+++++++. ..+++... ...|.++++|++|++|++++..
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg~---~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDGG---KLRVVAHG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred eccCCCccCcccccCceEEEEecCCC---eEEEEecC-cCCCccceECCCCCEEEEccCC
Confidence 146888888763 34555433 3358899999999999988754
No 23
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=99.10 E-value=3.7e-08 Score=77.01 Aligned_cols=192 Identities=11% Similarity=0.091 Sum_probs=104.5
Q ss_pred ccccCCcccEEEcCC-CcEEEEe-CCCcEEEEccCCceeEec-cc-CCccccceEEccCCCEEEEEeCC-CcEEEEe-c-
Q 026118 6 EGIVNHPEDVSVDGN-GVLYTAT-GDGWIKRMHPNGTWEDWH-QV-GSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-E- 78 (243)
Q Consensus 6 ~g~~~~p~~i~~d~~-g~l~~~~-~~~~i~~~~~~g~~~~~~-~~-~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~- 78 (243)
.|...++.+|+++++ ++||+.+ ..+.|+.++.+|++..-. .. .+.+. +|++-.++.+ .++... +.++.+. .
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~E-gI~y~g~~~~-vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYE-GITYLGNGRY-VLSEERDQRLYIFTIDD 95 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEE-EEEE-STTEE-EEEETTTTEEEEEEE--
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCce-eEEEECCCEE-EEEEcCCCcEEEEEEec
Confidence 344557999999985 6799665 678899999888755432 22 24567 8988877776 666643 4577666 2
Q ss_pred -CC-c-----EEEEeccCCCcccCCccEEEcCC-CcEEEEeCCCCCCcccccccccccCCCceEEEEeC--CCCeeEEee
Q 026118 79 -EG-V-----TVLVSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDP--STNQTSLVL 148 (243)
Q Consensus 79 -~g-~-----~~~~~~~~~~~~~~~~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~--~~~~~~~~~ 148 (243)
+. . ..+.............|+++|+. +++|++.- .....||.++. ....+....
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE----------------~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE----------------RKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE----------------SSSEEEEEEESTT-SS--EEEE
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC----------------CCChhhEEEccccCccceeecc
Confidence 22 1 11121222223446789999996 56777631 12246888875 212222111
Q ss_pred ----c----cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc-----CCCCCCCceEECCCCCEEEEE
Q 026118 149 ----D----GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID-----NLPGGPDNVNLARDGSFWISI 215 (243)
Q Consensus 149 ----~----~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~d~~G~lwv~~ 215 (243)
. ....+.+++++|....||+....+..|..+|.++........... ..-..|.||++|++|+|||..
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 1 123478999999888899998889999999966532222222110 011258999999999999976
No 24
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=99.05 E-value=5.3e-08 Score=82.25 Aligned_cols=168 Identities=16% Similarity=0.216 Sum_probs=103.2
Q ss_pred ceecccccCCcccEEEcCCCcEEEEeC-CCcEEEEccC-CceeEec------c--cCCccccceEEccCC------CEEE
Q 026118 2 IKLGEGIVNHPEDVSVDGNGVLYTATG-DGWIKRMHPN-GTWEDWH------Q--VGSQSLLGLTTTKEN------NVII 65 (243)
Q Consensus 2 ~~~~~g~~~~p~~i~~d~~g~l~~~~~-~~~i~~~~~~-g~~~~~~------~--~~~~~~~~i~~~~~g------~l~~ 65 (243)
+.+++| +..|.+|++.+||+||++.. .|+|+++++. +...... . ...... +|+++|+= +.+|
T Consensus 23 ~~va~G-L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLl-glal~PdF~~~~~n~~lY 100 (454)
T TIGR03606 23 KVLLSG-LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLL-GLALHPDFMQEKGNPYVY 100 (454)
T ss_pred EEEECC-CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCcee-eEEECCCccccCCCcEEE
Confidence 466776 99999999999999999996 6999999743 3222111 0 123345 88998652 3448
Q ss_pred EEe----------CCCcEEEEe-c-C-C----cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCc------cccc
Q 026118 66 VCD----------SQQGLLKVS-E-E-G----VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTP------AEYY 122 (243)
Q Consensus 66 v~~----------~~~gl~~~~-~-~-g----~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~------~~~~ 122 (243)
++- ....|.++. . . . .+.+...........-..|+++|||.||++.-...... ....
T Consensus 101 vsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~a 180 (454)
T TIGR03606 101 ISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQA 180 (454)
T ss_pred EEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcchh
Confidence 874 123577776 2 1 1 23333222222223445789999999999865421100 0000
Q ss_pred cc------c---cccCCCceEEEEeCCCCe-----------eEEeeccccccceEEEcCCCCEEEEEEcC
Q 026118 123 LD------L---VSGEPHGVLLKYDPSTNQ-----------TSLVLDGLYFANGVALSEDERFLVVCESW 172 (243)
Q Consensus 123 ~~------~---~~~~~~g~v~~~~~~~~~-----------~~~~~~~~~~~~gi~~~~dg~~l~v~~~~ 172 (243)
.. . ......|+|+|+++++.- .+..+.++..|.+|+|+|+|+ ||+++-+
T Consensus 181 Q~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~~e~G 249 (454)
T TIGR03606 181 QHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYASEQG 249 (454)
T ss_pred ccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEEEecC
Confidence 00 0 112356899999998431 234456778899999999887 9998754
No 25
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.05 E-value=2e-07 Score=75.03 Aligned_cols=174 Identities=13% Similarity=0.060 Sum_probs=106.9
Q ss_pred CcccEEEcCCCcEEEEe-CCC-cEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeC-CCcEEEEe-cCC--cEE
Q 026118 11 HPEDVSVDGNGVLYTAT-GDG-WIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS-QQGLLKVS-EEG--VTV 83 (243)
Q Consensus 11 ~p~~i~~d~~g~l~~~~-~~~-~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~-~~gl~~~~-~~g--~~~ 83 (243)
.|.+++++++|.+++.. .++ .++.++. +++..........+. .+.++++|+.+|++.. .+.+..++ .++ ...
T Consensus 116 ~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~ 194 (300)
T TIGR03866 116 EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPR-FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKK 194 (300)
T ss_pred CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCcc-EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeee
Confidence 47889999999766544 333 3556663 343322222223455 7899999997566643 34577888 555 222
Q ss_pred EEeccCC--CcccCCccEEEcCCCcE-EEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEc
Q 026118 84 LVSQFNG--SQLRFANDVIEASDGSL-YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS 160 (243)
Q Consensus 84 ~~~~~~~--~~~~~~~~l~~d~~G~l-~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~ 160 (243)
+.....+ .....+.+++++++|+. |++.. ..+.+..+|.++++..........+.+++++
T Consensus 195 ~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~-----------------~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 257 (300)
T TIGR03866 195 ITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG-----------------PANRVAVVDAKTYEVLDYLLVGQRVWQLAFT 257 (300)
T ss_pred eeecccccccccCCccceEECCCCCEEEEEcC-----------------CCCeEEEEECCCCcEEEEEEeCCCcceEEEC
Confidence 2211111 01124557889999875 55532 1346888898877765443323467889999
Q ss_pred CCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEEC
Q 026118 161 EDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLA 206 (243)
Q Consensus 161 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d 206 (243)
|+|+.||++...++.|.++|..... ..+.+. ..+.|.+|++.
T Consensus 258 ~~g~~l~~~~~~~~~i~v~d~~~~~--~~~~~~--~~~~~~~~~~~ 299 (300)
T TIGR03866 258 PDEKYLLTTNGVSNDVSVIDVAALK--VIKSIK--VGRLPWGVVVR 299 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCc--EEEEEE--cccccceeEeC
Confidence 9999888886667899999987632 122232 23567888764
No 26
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=2.1e-07 Score=78.10 Aligned_cols=188 Identities=16% Similarity=0.172 Sum_probs=127.1
Q ss_pred CCcccEEEcCCC-cEEEEe-CCCcEEEEccC-CceeEecccC-CccccceEEccCCCEEEEEeCC-CcEEEEe-cCC-cE
Q 026118 10 NHPEDVSVDGNG-VLYTAT-GDGWIKRMHPN-GTWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-EEG-VT 82 (243)
Q Consensus 10 ~~p~~i~~d~~g-~l~~~~-~~~~i~~~~~~-g~~~~~~~~~-~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~~g-~~ 82 (243)
..|..++++++| .+|+.. ....+..++.. ..+..+.... ..|. ++++++.++.+|+.+.. +.+..++ ... ..
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~-~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~ 109 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPA-GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL 109 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCcccc-ceeeCCCCCeEEEecCCCCeEEEEcCccccee
Confidence 478999999988 788887 33345555422 2222222222 4567 89999988855998865 5677887 333 22
Q ss_pred EEEeccCCCcccCCccEEEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcC
Q 026118 83 VLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE 161 (243)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~ 161 (243)
... ..+ ..|.+++++++| .+|+++... ..+.+..+|.++..+.........|.+++++|
T Consensus 110 ~~~--~vG---~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p 169 (381)
T COG3391 110 GSI--PVG---LGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDP 169 (381)
T ss_pred eEe--eec---cCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCeEEEEEecCCCcceEEECC
Confidence 211 111 268899999987 799997641 24689999999877665543334679999999
Q ss_pred CCCEEEEEEcCCCeEEEEEeecCCCcceE-EeccCCCCCCCceEECCCCC-EEEEEecC
Q 026118 162 DERFLVVCESWKFRCVKHFLKVSGRTDRE-IFIDNLPGGPDNVNLARDGS-FWISIIKM 218 (243)
Q Consensus 162 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~d~~G~-lwv~~~~~ 218 (243)
+|+.+|+++..++.|..++.+........ ...-.....|.+++++++|+ +|+.....
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 99999999988899999997653222100 00012345789999999998 88877654
No 27
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.99 E-value=7.8e-08 Score=87.53 Aligned_cols=182 Identities=19% Similarity=0.209 Sum_probs=117.0
Q ss_pred cccEEEcC-CCcEEEEe-CCCcEEEEc-cC-----CceeEec----------c-----------cCCccccceEEccCCC
Q 026118 12 PEDVSVDG-NGVLYTAT-GDGWIKRMH-PN-----GTWEDWH----------Q-----------VGSQSLLGLTTTKENN 62 (243)
Q Consensus 12 p~~i~~d~-~g~l~~~~-~~~~i~~~~-~~-----g~~~~~~----------~-----------~~~~~~~~i~~~~~g~ 62 (243)
--.||++| +|.||+++ ....|+|+. .. +.+.... . ....|- ||++|++|.
T Consensus 409 ~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~Pk-GIa~dk~g~ 487 (1899)
T KOG4659|consen 409 SYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPK-GIAFDKMGN 487 (1899)
T ss_pred eeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCC-ceeEccCCc
Confidence 34599998 99999998 567788886 11 1122111 0 012467 999999999
Q ss_pred EEEEEeCCCcEEEEecCC-cEEEEecc---------------CCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccc
Q 026118 63 VIIVCDSQQGLLKVSEEG-VTVLVSQF---------------NGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDL 125 (243)
Q Consensus 63 l~~v~~~~~gl~~~~~~g-~~~~~~~~---------------~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~ 125 (243)
+ |+++ +..|.++|.+| +..+.... ....+..|.+++++| |+.+++-+.+
T Consensus 488 l-YfaD-~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n------------ 553 (1899)
T KOG4659|consen 488 L-YFAD-GTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN------------ 553 (1899)
T ss_pred E-EEec-ccEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc------------
Confidence 9 9998 46788888777 44433210 111245788899999 8999998644
Q ss_pred cccCCCceEEEEeCCCCeeEEeecc---------------------ccccceEEEcCCCCEEEEEEcCCCeEEEEEeecC
Q 026118 126 VSGEPHGVLLKYDPSTNQTSLVLDG---------------------LYFANGVALSEDERFLVVCESWKFRCVKHFLKVS 184 (243)
Q Consensus 126 ~~~~~~g~v~~~~~~~~~~~~~~~~---------------------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~ 184 (243)
-|+++++. .+++.+... +..+..|+++++|- |||+++...+|-+...-+
T Consensus 554 -------vvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rriNrvr~~~- 623 (1899)
T KOG4659|consen 554 -------VVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRRINRVRKLS- 623 (1899)
T ss_pred -------eEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEeccchhhhheEEec-
Confidence 68888887 555533210 12356899999998 999998765555543311
Q ss_pred CCcceEEec--------------c-----------CCCCCCCceEECCCCCEEEEEecC
Q 026118 185 GRTDREIFI--------------D-----------NLPGGPDNVNLARDGSFWISIIKM 218 (243)
Q Consensus 185 ~~~~~~~~~--------------~-----------~~~~~~~~i~~d~~G~lwv~~~~~ 218 (243)
+-+...+++ + ..-..|..+|+.++|.++|++..+
T Consensus 624 tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 624 TDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred cCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCc
Confidence 001111111 0 011258889999999999998654
No 28
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.89 E-value=3.4e-07 Score=76.33 Aligned_cols=170 Identities=12% Similarity=0.129 Sum_probs=98.0
Q ss_pred cEEEEe-CCCcEEEEc-cCCce-eEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEeccCCCcccC
Q 026118 22 VLYTAT-GDGWIKRMH-PNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVSQFNGSQLRF 95 (243)
Q Consensus 22 ~l~~~~-~~~~i~~~~-~~g~~-~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~~~~~~~~~~ 95 (243)
.+|+.. .++.|..+| .+.++ ..+... ..+..++.+++||+.+|+++..+.|..+| .++ ...+. .+ ..
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~-~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~---~G---~~ 79 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTG-GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK---VG---GN 79 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-S-TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----S---SE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCC-CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe---cC---CC
Confidence 344666 678899998 34443 334332 33332678899999889998766788999 555 33332 22 34
Q ss_pred CccEEEcCCCcE-EEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--------ccccceEEEcCCCCEE
Q 026118 96 ANDVIEASDGSL-YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--------LYFANGVALSEDERFL 166 (243)
Q Consensus 96 ~~~l~~d~~G~l-~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--------~~~~~gi~~~~dg~~l 166 (243)
+.++++++||++ ++++. ..+.+..+|.++.++...... .....+|..++.....
T Consensus 80 ~~~i~~s~DG~~~~v~n~-----------------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~f 142 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANY-----------------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEF 142 (369)
T ss_dssp EEEEEE--TTTEEEEEEE-----------------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEE
T ss_pred cceEEEcCCCCEEEEEec-----------------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEE
Confidence 678999999984 44532 235788899887665543221 1234578778888744
Q ss_pred EEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118 167 VVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK 217 (243)
Q Consensus 167 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 217 (243)
+++-...+.|+.+|.++......+.+ ....+|.+..+|++|+.++....
T Consensus 143 Vv~lkd~~~I~vVdy~d~~~~~~~~i--~~g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 143 VVNLKDTGEIWVVDYSDPKNLKVTTI--KVGRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp EEEETTTTEEEEEETTTSSCEEEEEE--E--TTEEEEEE-TTSSEEEEEEG
T ss_pred EEEEccCCeEEEEEeccccccceeee--cccccccccccCcccceeeeccc
Confidence 45556678999998765421111222 23447889999999996554433
No 29
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.81 E-value=5.4e-07 Score=75.13 Aligned_cols=154 Identities=14% Similarity=0.172 Sum_probs=93.6
Q ss_pred cccEEEcCCCc-EEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEe-cCC--cEEEE
Q 026118 12 PEDVSVDGNGV-LYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-EEG--VTVLV 85 (243)
Q Consensus 12 p~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~~g--~~~~~ 85 (243)
+..+++.+||+ +|+++.++.|..+| .++++..-...+..|. ++++++||+++++++.. ..+..+| .+. .+.+.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~-~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR-GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE-EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc-eEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 34577788885 99998889999999 4555544445566788 99999999987888754 4577788 554 33333
Q ss_pred ec-cCC-CcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE--EeeccccccceEEEcC
Q 026118 86 SQ-FNG-SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS--LVLDGLYFANGVALSE 161 (243)
Q Consensus 86 ~~-~~~-~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~--~~~~~~~~~~gi~~~~ 161 (243)
.. ... .....+.+|..++....|+.+.. ..+.|+.+|....... ........+.+..+++
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk----------------d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp 181 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASPGRPEFVVNLK----------------DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP 181 (369)
T ss_dssp --EE-TTTS---EEEEEE-SSSSEEEEEET----------------TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T
T ss_pred cccccccccCCCceeEEecCCCCEEEEEEc----------------cCCeEEEEEeccccccceeeecccccccccccCc
Confidence 21 111 11223446666777776765421 3468999986543221 2233346788899999
Q ss_pred CCCEEEEEEcCCCeEEEEEee
Q 026118 162 DERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 162 dg~~l~v~~~~~~~i~~~~~~ 182 (243)
++++++++....+.|..+|..
T Consensus 182 dgry~~va~~~sn~i~viD~~ 202 (369)
T PF02239_consen 182 DGRYFLVAANGSNKIAVIDTK 202 (369)
T ss_dssp TSSEEEEEEGGGTEEEEEETT
T ss_pred ccceeeecccccceeEEEeec
Confidence 999999987666777776654
No 30
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.77 E-value=2e-06 Score=69.24 Aligned_cols=187 Identities=18% Similarity=0.183 Sum_probs=103.4
Q ss_pred ccEEEcCCCcEEEEeCC-------------CcEEEEc-cCCc-eeEecccC------CccccceEEcc-CC----CEEEE
Q 026118 13 EDVSVDGNGVLYTATGD-------------GWIKRMH-PNGT-WEDWHQVG------SQSLLGLTTTK-EN----NVIIV 66 (243)
Q Consensus 13 ~~i~~d~~g~l~~~~~~-------------~~i~~~~-~~g~-~~~~~~~~------~~~~~~i~~~~-~g----~l~~v 66 (243)
.++.+|++|+||+-+.+ -+|..+| .+++ ++++..+. ...+ .+++|. ++ .++|+
T Consensus 4 ~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~ln-dl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 4 QRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLN-DLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEE-EEEEECTTTTS-SEEEEE
T ss_pred cEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccc-eEEEEccCCCCcceEEEE
Confidence 46889999999988621 2688998 4444 34443321 1123 577775 22 35599
Q ss_pred EeCC-CcEEEEe-cCC--cEEEEeccCCCc--------------ccCCccEEEcC---CC-cEEEEeCCCCCCccccccc
Q 026118 67 CDSQ-QGLLKVS-EEG--VTVLVSQFNGSQ--------------LRFANDVIEAS---DG-SLYFTVSSTKFTPAEYYLD 124 (243)
Q Consensus 67 ~~~~-~gl~~~~-~~g--~~~~~~~~~~~~--------------~~~~~~l~~d~---~G-~l~v~~~~~~~~~~~~~~~ 124 (243)
++.. .||+.+| .++ .+.........+ ...+.+++.++ +| .||+.-..
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls----------- 151 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS----------- 151 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-----------
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC-----------
Confidence 9965 5899999 776 333322111110 01233444443 33 25555221
Q ss_pred ccccCCCceEEEEeCCC---C----------eeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecC-CCcceE
Q 026118 125 LVSGEPHGVLLKYDPST---N----------QTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVS-GRTDRE 190 (243)
Q Consensus 125 ~~~~~~~g~v~~~~~~~---~----------~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~-~~~~~~ 190 (243)
+..+|++..+- . .++.+........|+++|++|. ||++....+.|.+++.++. ...+.+
T Consensus 152 ------s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~~ 224 (287)
T PF03022_consen 152 ------SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNAIGCWDPDGPYTPENFE 224 (287)
T ss_dssp -------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTEEEEEETTTSB-GCCEE
T ss_pred ------CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCeEEEEeCCCCcCccchh
Confidence 22466654320 0 1111111113457899999998 9999999999999998753 122444
Q ss_pred EeccCC--CCCCCceEECC--CCCEEEEEecC
Q 026118 191 IFIDNL--PGGPDNVNLAR--DGSFWISIIKM 218 (243)
Q Consensus 191 ~~~~~~--~~~~~~i~~d~--~G~lwv~~~~~ 218 (243)
++.... --+|+++.++. +|.||+-++.-
T Consensus 225 ~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl 256 (287)
T PF03022_consen 225 ILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRL 256 (287)
T ss_dssp EEEE-CC-GSSEEEEEE-T--TS-EEEEE-S-
T ss_pred eeEEcCceeeccceeeeccccCceEEEEECcc
Confidence 554322 24799999999 99999988664
No 31
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.76 E-value=3.9e-07 Score=79.89 Aligned_cols=185 Identities=15% Similarity=0.122 Sum_probs=120.3
Q ss_pred CCcccEEEc-CCCcEEEEe-CCCcEEEEccCCc-eeE-ecccCCccccceEEccCCCEEEEEeCC-C--cEEEEecCCcE
Q 026118 10 NHPEDVSVD-GNGVLYTAT-GDGWIKRMHPNGT-WED-WHQVGSQSLLGLTTTKENNVIIVCDSQ-Q--GLLKVSEEGVT 82 (243)
Q Consensus 10 ~~p~~i~~d-~~g~l~~~~-~~~~i~~~~~~g~-~~~-~~~~~~~~~~~i~~~~~g~l~~v~~~~-~--gl~~~~~~g~~ 82 (243)
.-|-+|.+| .+..+|.++ ....|.+-+.+|. .+. +......|. ||++|.-++-+|.++.. . ++..+|-+..+
T Consensus 1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPE-GiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rk 1103 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPE-GIAVDHIRRNMYWTDSVLDKIEVALLDGSERK 1103 (1289)
T ss_pred ceeeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCcc-ceeeeeccceeeeeccccchhheeecCCceee
Confidence 446678888 566677776 5556766665553 222 334456788 99999766544776632 2 23444311134
Q ss_pred EEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe-eccccccceEEEc
Q 026118 83 VLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYFANGVALS 160 (243)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~~~~~gi~~~ 160 (243)
.+... .+..|.+|++|+ .|+||++|.+ +....|-+.+.++...+.+ .+++..||||.|+
T Consensus 1104 vLf~t----dLVNPR~iv~D~~rgnLYwtDWn---------------RenPkIets~mDG~NrRilin~DigLPNGLtfd 1164 (1289)
T KOG1214|consen 1104 VLFYT----DLVNPRAIVVDPIRGNLYWTDWN---------------RENPKIETSSMDGENRRILINTDIGLPNGLTFD 1164 (1289)
T ss_pred EEEee----cccCcceEEeecccCceeecccc---------------ccCCcceeeccCCccceEEeecccCCCCCceeC
Confidence 44321 245788999998 7899999865 2344677777773333333 4678899999999
Q ss_pred CCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118 161 EDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD 219 (243)
Q Consensus 161 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~ 219 (243)
|..+.|.|.+.+++++..+.+++. +...++ .. .-+|.+|.-+.+. +|..+|...
T Consensus 1165 pfs~~LCWvDAGt~rleC~~p~g~--gRR~i~-~~-LqYPF~itsy~~~-fY~TDWk~n 1218 (1289)
T KOG1214|consen 1165 PFSKLLCWVDAGTKRLECTLPDGT--GRRVIQ-NN-LQYPFSITSYADH-FYHTDWKRN 1218 (1289)
T ss_pred cccceeeEEecCCcceeEecCCCC--cchhhh-hc-ccCceeeeecccc-ceeeccccC
Confidence 999999999999999998887763 222222 12 2367778777665 888787654
No 32
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=7.9e-06 Score=70.17 Aligned_cols=150 Identities=11% Similarity=0.057 Sum_probs=88.9
Q ss_pred cEEEcCCCc-EE-EEeCC--CcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCC---cEEEEe-cCC-cEE
Q 026118 14 DVSVDGNGV-LY-TATGD--GWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVS-EEG-VTV 83 (243)
Q Consensus 14 ~i~~d~~g~-l~-~~~~~--~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~---gl~~~~-~~g-~~~ 83 (243)
+..+.+||. |+ +...+ ..|+.++. .++.+......+... ..++++||+.++++.... .|+.++ .++ .+.
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~ 300 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR 300 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE
Confidence 466778884 44 44332 35888883 455444432222223 678899998544443222 388888 555 444
Q ss_pred EEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCC
Q 026118 84 LVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED 162 (243)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~d 162 (243)
+... . .......+++||+ ++++... .....||+++.++++.+++........+.+++||
T Consensus 301 lt~~---~--~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpD 360 (448)
T PRK04792 301 ITRH---R--AIDTEPSWHPDGKSLIFTSER---------------GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPD 360 (448)
T ss_pred CccC---C--CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEEecCCCCCcCeeECCC
Confidence 3221 1 1223457889987 4444221 1224799999988887776433233445789999
Q ss_pred CCEEEEEEcCCC--eEEEEEeecC
Q 026118 163 ERFLVVCESWKF--RCVKHFLKVS 184 (243)
Q Consensus 163 g~~l~v~~~~~~--~i~~~~~~~~ 184 (243)
|++++++....+ .|++++++++
T Consensus 361 G~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 361 GRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred CCEEEEEEecCCceEEEEEECCCC
Confidence 999988765433 5777777653
No 33
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.74 E-value=1.1e-05 Score=66.46 Aligned_cols=90 Identities=7% Similarity=-0.027 Sum_probs=58.6
Q ss_pred CcEEEEeCC-----CcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeC---------CC-cEEEEe-cCC--c
Q 026118 21 GVLYTATGD-----GWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS---------QQ-GLLKVS-EEG--V 81 (243)
Q Consensus 21 g~l~~~~~~-----~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~---------~~-gl~~~~-~~g--~ 81 (243)
.++|+.+.. +.|+.+| .++++..-...+..|. ++ +++||+.+|++.. .. -|..+| .+. .
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~ 90 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI 90 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence 468888743 7899999 4566555444556788 76 9999998899987 33 466777 555 2
Q ss_pred EEEEec--cCCCcccCCccEEEcCCCc-EEEEeC
Q 026118 82 TVLVSQ--FNGSQLRFANDVIEASDGS-LYFTVS 112 (243)
Q Consensus 82 ~~~~~~--~~~~~~~~~~~l~~d~~G~-l~v~~~ 112 (243)
..+... +...-...+..+++++||+ +|+.+.
T Consensus 91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~ 124 (352)
T TIGR02658 91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF 124 (352)
T ss_pred eEEccCCCchhhccCccceEEECCCCCEEEEecC
Confidence 223211 1111134566789999996 777763
No 34
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.72 E-value=1.1e-06 Score=70.79 Aligned_cols=148 Identities=18% Similarity=0.171 Sum_probs=93.4
Q ss_pred ceEEccCCCEEEEEeCCC-------------cEEEEe-cCC--cEEEEecc-CCCcccCCccEEEcCC------CcEEEE
Q 026118 54 GLTTTKENNVIIVCDSQQ-------------GLLKVS-EEG--VTVLVSQF-NGSQLRFANDVIEASD------GSLYFT 110 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~~~~-------------gl~~~~-~~g--~~~~~~~~-~~~~~~~~~~l~~d~~------G~l~v~ 110 (243)
++.+|+.|+| ||.+.+. .|+.+| .++ .+.+.-.. ...+.+..+++++|.. +.+|++
T Consensus 5 ~v~iD~~~rL-WVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYIt 83 (287)
T PF03022_consen 5 RVQIDECGRL-WVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYIT 83 (287)
T ss_dssp EEEE-TTSEE-EEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEE
T ss_pred EEEEcCCCCE-EEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEe
Confidence 7889999998 9998541 489999 655 33332211 1123567788999862 469999
Q ss_pred eCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc--------------------cccceEEEcC---CCCEEE
Q 026118 111 VSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--------------------YFANGVALSE---DERFLV 167 (243)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~--------------------~~~~gi~~~~---dg~~l~ 167 (243)
|++ ..+|..||..+++..++.... ....||+.++ ++++||
T Consensus 84 D~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LY 146 (287)
T PF03022_consen 84 DSG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLY 146 (287)
T ss_dssp ETT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEE
T ss_pred CCC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEE
Confidence 875 247888999888777654321 1235677765 889999
Q ss_pred EEEcCCCeEEEEEee---cCCCcc-------eEEeccCCCCCCCceEECCCCCEEEEEecCCc
Q 026118 168 VCESWKFRCVKHFLK---VSGRTD-------REIFIDNLPGGPDNVNLARDGSFWISIIKMDP 220 (243)
Q Consensus 168 v~~~~~~~i~~~~~~---~~~~~~-------~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~ 220 (243)
+....+..++++..+ ...... .+.+. ...+..+++++|++|+||++..+..+
T Consensus 147 f~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~~G~ly~~~~~~~a 208 (287)
T PF03022_consen 147 FHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDPNGNLYFTDVEQNA 208 (287)
T ss_dssp EEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEETTTEEEEEECCCTE
T ss_pred EEeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECCCCcEEEecCCCCe
Confidence 998888889988764 222211 12221 12235688999999999999877653
No 35
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.71 E-value=1.4e-05 Score=68.42 Aligned_cols=171 Identities=12% Similarity=0.079 Sum_probs=99.5
Q ss_pred cEEEcCCCc-E-EEEe--CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEe-CC--CcEEEEe-cCC-cEE
Q 026118 14 DVSVDGNGV-L-YTAT--GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCD-SQ--QGLLKVS-EEG-VTV 83 (243)
Q Consensus 14 ~i~~d~~g~-l-~~~~--~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~-~~--~gl~~~~-~~g-~~~ 83 (243)
++++.+||. | |++. .+..|+.++ ..++...+....+... ...++|||+.++++. .. ..|+.++ .++ .+.
T Consensus 206 ~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~ 284 (435)
T PRK05137 206 TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR 284 (435)
T ss_pred eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc-CcEECCCCCEEEEEEecCCCceEEEEECCCCceEE
Confidence 456677774 4 4443 235688888 4555544432223333 678999998644433 22 3488888 555 444
Q ss_pred EEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCC
Q 026118 84 LVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED 162 (243)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~d 162 (243)
+.... .......++|||+ ++++... .....||.++.++++.+++.........+.++||
T Consensus 285 Lt~~~-----~~~~~~~~spDG~~i~f~s~~---------------~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Spd 344 (435)
T PRK05137 285 LTDSP-----AIDTSPSYSPDGSQIVFESDR---------------SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPR 344 (435)
T ss_pred ccCCC-----CccCceeEcCCCCEEEEEECC---------------CCCCeEEEEECCCCCeEEeecCCCcccCeEECCC
Confidence 33211 1123457889987 5554321 1224799999988877777544333456789999
Q ss_pred CCEEEEEEcCC--CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118 163 ERFLVVCESWK--FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS 210 (243)
Q Consensus 163 g~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~ 210 (243)
|+.|+++.... ..|+.+++++.. .+.+.. ........++++|+
T Consensus 345 G~~ia~~~~~~~~~~i~~~d~~~~~---~~~lt~--~~~~~~p~~spDG~ 389 (435)
T PRK05137 345 GDLIAFTKQGGGQFSIGVMKPDGSG---ERILTS--GFLVEGPTWAPNGR 389 (435)
T ss_pred CCEEEEEEcCCCceEEEEEECCCCc---eEeccC--CCCCCCCeECCCCC
Confidence 99888775433 467777765432 222221 11234567777777
No 36
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.71 E-value=7.1e-06 Score=71.47 Aligned_cols=155 Identities=15% Similarity=0.147 Sum_probs=105.8
Q ss_pred cccCCcccEEEcCCCcEEEEe-CCCcEEEEccCC--ceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--
Q 026118 7 GIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNG--TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-- 80 (243)
Q Consensus 7 g~~~~p~~i~~d~~g~l~~~~-~~~~i~~~~~~g--~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-- 80 (243)
|....-.++++.|||.+.++. .+++|..++... .+.+|........ ++.+...|+.++.+..++-|..+| ...
T Consensus 348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt-~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT-AVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE-EEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 445567788999999766554 889999998433 4555544333344 888999999855555555566777 332
Q ss_pred cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecccccc-ceEEE
Q 026118 81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA-NGVAL 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~-~gi~~ 159 (243)
++.+.. +......++++||.|.+.++.... .-.|+..+.++|++.-+..+...| .++.|
T Consensus 427 fRTft~----P~p~QfscvavD~sGelV~AG~~d----------------~F~IfvWS~qTGqllDiLsGHEgPVs~l~f 486 (893)
T KOG0291|consen 427 FRTFTS----PEPIQFSCVAVDPSGELVCAGAQD----------------SFEIFVWSVQTGQLLDILSGHEGPVSGLSF 486 (893)
T ss_pred eeeecC----CCceeeeEEEEcCCCCEEEeeccc----------------eEEEEEEEeecCeeeehhcCCCCcceeeEE
Confidence 444322 122345689999999988874321 225888888889887766555444 67999
Q ss_pred cCCCCEEEEEEcCCCeEEEEEeec
Q 026118 160 SEDERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 160 ~~dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
+++|. +.++.+++..|..++.-.
T Consensus 487 ~~~~~-~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 487 SPDGS-LLASGSWDKTVRIWDIFS 509 (893)
T ss_pred ccccC-eEEeccccceEEEEEeec
Confidence 99999 666667889999988754
No 37
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=1.4e-05 Score=68.49 Aligned_cols=177 Identities=12% Similarity=0.114 Sum_probs=99.8
Q ss_pred cEEEcCCCc-EEEEe-C--CCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEE-eCC--CcEEEEe-cCC-cEE
Q 026118 14 DVSVDGNGV-LYTAT-G--DGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVC-DSQ--QGLLKVS-EEG-VTV 83 (243)
Q Consensus 14 ~i~~d~~g~-l~~~~-~--~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~-~~~--~gl~~~~-~~g-~~~ 83 (243)
++++.+||. |++.. . ...|++++. .++...+....+... .+.+++||+.++++ ... ..|+.++ .++ .+.
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~ 286 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR 286 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE
Confidence 345667774 44443 2 235888883 455444332222223 67899999854443 322 2488888 566 444
Q ss_pred EEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCC
Q 026118 84 LVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED 162 (243)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~d 162 (243)
+.... .....+.+++||+ ++++... .....||.++.++++.+++.........++++||
T Consensus 287 lt~~~-----~~~~~~~~spDG~~l~f~sd~---------------~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpD 346 (433)
T PRK04922 287 LTNHF-----GIDTEPTWAPDGKSIYFTSDR---------------GGRPQIYRVAASGGSAERLTFQGNYNARASVSPD 346 (433)
T ss_pred CccCC-----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence 33211 1123458899997 4444211 1123699999887877766533333446899999
Q ss_pred CCEEEEEEcCC--CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEe
Q 026118 163 ERFLVVCESWK--FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISII 216 (243)
Q Consensus 163 g~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~ 216 (243)
|++++++...+ ..|+.++..++. .+.+... .......++++|+ |++...
T Consensus 347 G~~Ia~~~~~~~~~~I~v~d~~~g~---~~~Lt~~--~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 347 GKKIAMVHGSGGQYRIAVMDLSTGS---VRTLTPG--SLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred CCEEEEEECCCCceeEEEEECCCCC---eEECCCC--CCCCCceECCCCCEEEEEEe
Confidence 99888875432 358888876532 2233211 1223457778887 344333
No 38
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=2e-05 Score=67.35 Aligned_cols=180 Identities=12% Similarity=0.130 Sum_probs=100.7
Q ss_pred cEEEcCCCc-EEEEe-C--CCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCC---cEEEEe-cCC-cEE
Q 026118 14 DVSVDGNGV-LYTAT-G--DGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVS-EEG-VTV 83 (243)
Q Consensus 14 ~i~~d~~g~-l~~~~-~--~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~---gl~~~~-~~g-~~~ 83 (243)
++++.+||+ |+++. . ...|+.++ ..++...+....+... ..+++|||+.++++.... .|+.++ ..+ .+.
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~ 278 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR 278 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE
Confidence 456778884 44443 2 23588888 4555544432223333 678999998644433222 488888 444 443
Q ss_pred EEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCC
Q 026118 84 LVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED 162 (243)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~d 162 (243)
+... . .......++|||+ ++++... .....||.++.++++.+++...........++||
T Consensus 279 lt~~-~----~~~~~~~wSpDG~~l~f~s~~---------------~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpD 338 (427)
T PRK02889 279 LTQS-S----GIDTEPFFSPDGRSIYFTSDR---------------GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPD 338 (427)
T ss_pred CCCC-C----CCCcCeEEcCCCCEEEEEecC---------------CCCcEEEEEECCCCceEEEecCCCCcCceEECCC
Confidence 3221 1 1123457899997 4444221 1223699999887776665432223345789999
Q ss_pred CCEEEEEEcCC--CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEecCC
Q 026118 163 ERFLVVCESWK--FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIKMD 219 (243)
Q Consensus 163 g~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~ 219 (243)
|++++++.... ..|+.++..++. .+.+... .......++++|+ |+.+...++
T Consensus 339 G~~Ia~~s~~~g~~~I~v~d~~~g~---~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g 393 (427)
T PRK02889 339 GKLLAYISRVGGAFKLYVQDLATGQ---VTALTDT--TRDESPSFAPNGRYILYATQQGG 393 (427)
T ss_pred CCEEEEEEccCCcEEEEEEECCCCC---eEEccCC--CCccCceECCCCCEEEEEEecCC
Confidence 99887765433 368888876532 2222211 1224467788887 444444443
No 39
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=2.6e-05 Score=66.71 Aligned_cols=180 Identities=14% Similarity=0.116 Sum_probs=101.9
Q ss_pred cEEEcCCCc-E-EEEe--CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCC---cEEEEe-cCC-cEE
Q 026118 14 DVSVDGNGV-L-YTAT--GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVS-EEG-VTV 83 (243)
Q Consensus 14 ~i~~d~~g~-l-~~~~--~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~---gl~~~~-~~g-~~~ 83 (243)
++++.+||. | |++. ....|+.++ ..|+........+... .+.++|||+.|+++.... .|+.++ .++ .+.
T Consensus 203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~ 281 (429)
T PRK03629 203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ 281 (429)
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence 567778874 3 3333 234577777 3455444332222223 678999998645443222 488888 666 544
Q ss_pred EEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCC
Q 026118 84 LVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED 162 (243)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~d 162 (243)
+... . .......++|||+ |+++... .....||.++.++++.+++...........++||
T Consensus 282 lt~~---~--~~~~~~~wSPDG~~I~f~s~~---------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpD 341 (429)
T PRK03629 282 VTDG---R--SNNTEPTWFPDSQNLAYTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSD 341 (429)
T ss_pred ccCC---C--CCcCceEECCCCCEEEEEeCC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence 4321 1 1234568899997 4444211 1123799999998877776543334456889999
Q ss_pred CCEEEEEEcCC--CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEecCC
Q 026118 163 ERFLVVCESWK--FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIKMD 219 (243)
Q Consensus 163 g~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~ 219 (243)
|++++++...+ ..|+.++++++. .+.+... ..-....+++||+ |+.+...++
T Consensus 342 G~~Ia~~~~~~g~~~I~~~dl~~g~---~~~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 342 GKFMVMVSSNGGQQHIAKQDLATGG---VQVLTDT--FLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC---eEEeCCC--CCCCCceECCCCCEEEEEEcCCC
Confidence 99887765432 457788876542 2222211 1122356778887 444444433
No 40
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=98.64 E-value=4.6e-07 Score=76.62 Aligned_cols=143 Identities=17% Similarity=0.116 Sum_probs=91.7
Q ss_pred ccEEEcCCCcEEEEeCCCcEEEEc-cCCceeEecccCC-ccccceEEccCCCEEEEEeCCCcEEEEecCCcEEEEeccCC
Q 026118 13 EDVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWHQVGS-QSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNG 90 (243)
Q Consensus 13 ~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~-~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g~~~~~~~~~~ 90 (243)
..+++|.+|++|+++.+ ++++++ ..++........- .+...++.|..|++ ||++ .+|++..++.|.+ +......
T Consensus 168 ~aLv~D~~g~lWvgT~d-GL~~fd~~~gkalql~s~~~dk~I~al~~d~qg~L-WVGT-dqGv~~~e~~G~~-~sn~~~~ 243 (671)
T COG3292 168 VALVFDANGRLWVGTPD-GLSYFDAGRGKALQLASPPLDKAINALIADVQGRL-WVGT-DQGVYLQEAEGWR-ASNWGPM 243 (671)
T ss_pred eeeeeeccCcEEEecCC-cceEEccccceEEEcCCCcchhhHHHHHHHhcCcE-EEEe-ccceEEEchhhcc-ccccCCC
Confidence 45888999999999875 489998 4555544333211 23326788899999 9998 5799998855511 1111222
Q ss_pred CcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee----ccccccceEEEcCCCCEE
Q 026118 91 SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL----DGLYFANGVALSEDERFL 166 (243)
Q Consensus 91 ~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~----~~~~~~~gi~~~~dg~~l 166 (243)
.+...+..+..|.+|++|+++.. +++++....+.+.... ......+++..|.+|. |
T Consensus 244 lp~~~I~ll~qD~qG~lWiGTen-------------------Gl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-L 303 (671)
T COG3292 244 LPSGNILLLVQDAQGELWIGTEN-------------------GLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-L 303 (671)
T ss_pred CcchheeeeecccCCCEEEeecc-------------------cceeEecCCCCccccccccCCccccccceeeccCCC-E
Confidence 23334556678889999999643 5666655544433221 2234457889999999 9
Q ss_pred EEEEcCCCeEEEEEe
Q 026118 167 VVCESWKFRCVKHFL 181 (243)
Q Consensus 167 ~v~~~~~~~i~~~~~ 181 (243)
|+.+. +++++|..
T Consensus 304 Wv~t~--~giv~~~~ 316 (671)
T COG3292 304 WVGTY--GGIVRYLT 316 (671)
T ss_pred eeecc--CceEEEec
Confidence 99864 45665543
No 41
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=98.63 E-value=2e-07 Score=78.67 Aligned_cols=174 Identities=13% Similarity=0.027 Sum_probs=100.7
Q ss_pred cCCCcEEEEeCCCcEEEEccCC--cee--EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCC
Q 026118 18 DGNGVLYTATGDGWIKRMHPNG--TWE--DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGS 91 (243)
Q Consensus 18 d~~g~l~~~~~~~~i~~~~~~g--~~~--~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~ 91 (243)
|+...+|..-.+.++.+.+.-+ .++ ++... ..+...+.+|.+|++ ||++ .+|+++|+ ..+ ..++......
T Consensus 130 ddaqllw~~~~~~gV~~~d~lg~~~v~~~r~ll~-d~~V~aLv~D~~g~l-WvgT-~dGL~~fd~~~gkalql~s~~~d- 205 (671)
T COG3292 130 DDAQLLWLHASVIGVDSADALGREAVKDVRPLLK-DTPVVALVFDANGRL-WVGT-PDGLSYFDAGRGKALQLASPPLD- 205 (671)
T ss_pred chhhhhhhccccCCccccccchhhhccCcccccc-CccceeeeeeccCcE-EEec-CCcceEEccccceEEEcCCCcch-
Confidence 3444566555555666555211 111 11111 234437899999999 9998 57999999 455 3333221111
Q ss_pred cccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--ccccceEEEcCCCCEEEEE
Q 026118 92 QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGVALSEDERFLVVC 169 (243)
Q Consensus 92 ~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~~gi~~~~dg~~l~v~ 169 (243)
..++.+..|-.|++||++.. +++++++.+.++...... .....-+.-|.+|. +|++
T Consensus 206 --k~I~al~~d~qg~LWVGTdq-------------------Gv~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG~-lWiG 263 (671)
T COG3292 206 --KAINALIADVQGRLWVGTDQ-------------------GVYLQEAEGWRASNWGPMLPSGNILLLVQDAQGE-LWIG 263 (671)
T ss_pred --hhHHHHHHHhcCcEEEEecc-------------------ceEEEchhhccccccCCCCcchheeeeecccCCC-EEEe
Confidence 23556677889999999654 799999885332221111 12233456677887 9999
Q ss_pred EcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118 170 ESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD 219 (243)
Q Consensus 170 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~ 219 (243)
.. +.++++......+..+..--...-....++..|.+|+||+++..+.
T Consensus 264 Te--nGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~gi 311 (671)
T COG3292 264 TE--NGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGI 311 (671)
T ss_pred ec--ccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccCce
Confidence 65 4566665543322211110000111346789999999999998865
No 42
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.59 E-value=6.3e-05 Score=64.36 Aligned_cols=179 Identities=14% Similarity=0.151 Sum_probs=100.6
Q ss_pred ccEEEcCCCc-E-EEEeCC--CcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCC---cEEEEe-cCC-cE
Q 026118 13 EDVSVDGNGV-L-YTATGD--GWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVS-EEG-VT 82 (243)
Q Consensus 13 ~~i~~d~~g~-l-~~~~~~--~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~---gl~~~~-~~g-~~ 82 (243)
.+..+.+||. | |++..+ ..|++++ ..++.+.+....+... ...++|||+.+++..... .|+.++ .++ .+
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 280 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS 280 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 3456777774 4 444332 3588887 3455554433222223 678899998644433222 488888 555 44
Q ss_pred EEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcC
Q 026118 83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE 161 (243)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~ 161 (243)
.+... . .......+++||+ ++++... .....||+++.++++.+++...........++|
T Consensus 281 ~lt~~-~----~~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp 340 (430)
T PRK00178 281 RVTNH-P----AIDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA 340 (430)
T ss_pred EcccC-C----CCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccceEECC
Confidence 43321 1 1122457889986 5555321 123479999998888776653323334578999
Q ss_pred CCCEEEEEEcCC--CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEec
Q 026118 162 DERFLVVCESWK--FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIK 217 (243)
Q Consensus 162 dg~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~ 217 (243)
||++++++.... ..|+.+++.++. .+.+... .......++++|+ |+.+...
T Consensus 341 dg~~i~~~~~~~~~~~l~~~dl~tg~---~~~lt~~--~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 341 DGKTLVMVHRQDGNFHVAAQDLQRGS---VRILTDT--SLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred CCCEEEEEEccCCceEEEEEECCCCC---EEEccCC--CCCCCceECCCCCEEEEEEec
Confidence 999998876433 357788876532 2222211 1222346777777 4444433
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.56 E-value=7.1e-05 Score=58.79 Aligned_cols=178 Identities=17% Similarity=0.103 Sum_probs=106.2
Q ss_pred CcccEEEcCCCcEEEEe-CCCcEEEEccC-Ccee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEE
Q 026118 11 HPEDVSVDGNGVLYTAT-GDGWIKRMHPN-GTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVL 84 (243)
Q Consensus 11 ~p~~i~~d~~g~l~~~~-~~~~i~~~~~~-g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~ 84 (243)
...++.+.+++.++++. .++.|..++.. ++.. .+........ .+.+++++.+++++...+.+..++ ..+ ...+
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 173 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN-SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL 173 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEE-EEEEcCcCCEEEEEcCCCcEEEEEccccccceeE
Confidence 45667888877766665 48889888843 4332 2221122234 788999888844443355677787 444 2222
Q ss_pred EeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcCC
Q 026118 85 VSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSED 162 (243)
Q Consensus 85 ~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~d 162 (243)
.. ....+.++.+.++++ ++++. ..+.|..+|..+++..... ........++++++
T Consensus 174 ~~-----~~~~i~~~~~~~~~~~l~~~~------------------~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 230 (289)
T cd00200 174 TG-----HTGEVNSVAFSPDGEKLLSSS------------------SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD 230 (289)
T ss_pred ec-----CccccceEEECCCcCEEEEec------------------CCCcEEEEECCCCceecchhhcCCceEEEEEcCC
Confidence 21 123567889999985 55542 1357888888765544333 22335678999999
Q ss_pred CCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118 163 ERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII 216 (243)
Q Consensus 163 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~ 216 (243)
+. ++++...++.|..|+..... ....+. .....+..+++++++++++...
T Consensus 231 ~~-~~~~~~~~~~i~i~~~~~~~--~~~~~~-~~~~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 231 GY-LLASGSEDGTIRVWDLRTGE--CVQTLS-GHTNSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred Cc-EEEEEcCCCcEEEEEcCCce--eEEEcc-ccCCcEEEEEECCCCCEEEEec
Confidence 77 55554457889999876421 112221 2223456788998887555443
No 44
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.55 E-value=9.5e-05 Score=62.91 Aligned_cols=179 Identities=10% Similarity=0.030 Sum_probs=102.1
Q ss_pred cEEEcCCCc--EEEEe-C--CCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCC---CcEEEEe-cCC-cE
Q 026118 14 DVSVDGNGV--LYTAT-G--DGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVS-EEG-VT 82 (243)
Q Consensus 14 ~i~~d~~g~--l~~~~-~--~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~---~gl~~~~-~~g-~~ 82 (243)
...+.+||. +|+.. . ...|+.++ ..|+.+.+....+... ...++|||+.+.+.... ..|+.++ .++ .+
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~ 270 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT 270 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE
Confidence 345567774 56544 2 34688888 4565555433222222 45688999753443322 3588888 556 55
Q ss_pred EEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcC
Q 026118 83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE 161 (243)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~ 161 (243)
.+... .+ ... ...++|||+ ++++... .....||+++.++++.+++..... .+ ..++|
T Consensus 271 ~LT~~-~~-~d~---~p~~SPDG~~I~F~Sdr---------------~g~~~Iy~~dl~~g~~~rlt~~g~-~~-~~~SP 328 (419)
T PRK04043 271 QITNY-PG-IDV---NGNFVEDDKRIVFVSDR---------------LGYPNIFMKKLNSGSVEQVVFHGK-NN-SSVST 328 (419)
T ss_pred EcccC-CC-ccC---ccEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEeCccCCC-cC-ceECC
Confidence 54321 11 111 236889995 7776432 122479999999888877653211 12 48999
Q ss_pred CCCEEEEEEcCC--------CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEecCCc
Q 026118 162 DERFLVVCESWK--------FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIKMDP 220 (243)
Q Consensus 162 dg~~l~v~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~ 220 (243)
||+++.++.... ..|+.++++++. .+.+... +.-....+++||+ |++....++.
T Consensus 329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~LT~~--~~~~~p~~SPDG~~I~f~~~~~~~ 391 (419)
T PRK04043 329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSDY---IRRLTAN--GVNQFPRFSSDGGSIMFIKYLGNQ 391 (419)
T ss_pred CCCEEEEEEcCCCcccCCCCcEEEEEECCCCC---eEECCCC--CCcCCeEECCCCCEEEEEEccCCc
Confidence 999887665432 468888876542 2233211 1222367788887 5555554443
No 45
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.54 E-value=7.1e-06 Score=62.36 Aligned_cols=137 Identities=18% Similarity=0.168 Sum_probs=87.1
Q ss_pred EEcCCCcEEEEe-C---------CCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCC-CcE--EEEe-cCC-
Q 026118 16 SVDGNGVLYTAT-G---------DGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGL--LKVS-EEG- 80 (243)
Q Consensus 16 ~~d~~g~l~~~~-~---------~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl--~~~~-~~g- 80 (243)
-+||+|+.|.++ . .+.++++-+.+++..+..-...++ +|+.|.+.+.+|+.+.. .-+ +.+| ++|
T Consensus 115 kvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsN-gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~ 193 (310)
T KOG4499|consen 115 KVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISN-GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGD 193 (310)
T ss_pred ccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCc-cccccccCcEEEEEccCceEEeeeecCCCccc
Confidence 468899999886 1 245667767777776554445678 99999887766776643 345 4555 566
Q ss_pred ---cEEEEe--ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-cccccc
Q 026118 81 ---VTVLVS--QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFA 154 (243)
Q Consensus 81 ---~~~~~~--~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~ 154 (243)
.+.+.. .........|.+|++|.+|+||+++.+ .+.|+++||.+|++..-. -.....
T Consensus 194 ~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-----------------g~~V~~~dp~tGK~L~eiklPt~qi 256 (310)
T KOG4499|consen 194 LSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-----------------GGTVQKVDPTTGKILLEIKLPTPQI 256 (310)
T ss_pred ccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-----------------CcEEEEECCCCCcEEEEEEcCCCce
Confidence 233332 122233467899999999999999754 468999999999754321 112333
Q ss_pred ceEEEcCC-CCEEEEEE
Q 026118 155 NGVALSED-ERFLVVCE 170 (243)
Q Consensus 155 ~gi~~~~d-g~~l~v~~ 170 (243)
.+.+|-.. =..+|++.
T Consensus 257 tsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 257 TSCCFGGKNLDILYVTT 273 (310)
T ss_pred EEEEecCCCccEEEEEe
Confidence 45555322 23466664
No 46
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.53 E-value=5.9e-05 Score=64.65 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=80.6
Q ss_pred cEEEEccCCce-eEecccCCccccceEEccCCCEEEEEeCC---CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCC
Q 026118 31 WIKRMHPNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASD 104 (243)
Q Consensus 31 ~i~~~~~~g~~-~~~~~~~~~~~~~i~~~~~g~l~~v~~~~---~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 104 (243)
.|+..|.+|.. +.+... ..+.....+++||+.|..+... ..|+.++ .+| .+.+.. ..+ ......++||
T Consensus 183 ~l~~~d~dg~~~~~lt~~-~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-~~g----~~~~~~~SPD 256 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDG-SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-FPG----MTFAPRFSPD 256 (435)
T ss_pred EEEEECCCCCCcEEEecC-CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec-CCC----cccCcEECCC
Confidence 56666654442 222221 2233367889999853443322 3588888 666 444432 111 2235588999
Q ss_pred Cc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC--CCeEEEEEe
Q 026118 105 GS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW--KFRCVKHFL 181 (243)
Q Consensus 105 G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~ 181 (243)
|+ +.++.+. .....||.+|.++++.+++...........++|||+.|+++... ...|++++.
T Consensus 257 G~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 257 GRKVVMSLSQ---------------GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred CCEEEEEEec---------------CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence 96 4454321 12346999999988887776544445568999999988776533 347888887
Q ss_pred ecC
Q 026118 182 KVS 184 (243)
Q Consensus 182 ~~~ 184 (243)
++.
T Consensus 322 ~g~ 324 (435)
T PRK05137 322 DGS 324 (435)
T ss_pred CCC
Confidence 653
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.52 E-value=8.9e-05 Score=58.23 Aligned_cols=177 Identities=18% Similarity=0.155 Sum_probs=106.4
Q ss_pred cEEEcCCC-cEEEEeCCCcEEEEccCC--ceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEecc
Q 026118 14 DVSVDGNG-VLYTATGDGWIKRMHPNG--TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQF 88 (243)
Q Consensus 14 ~i~~d~~g-~l~~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~ 88 (243)
.+.+.+++ .++++..++.|..++... ....+........ .+.+++++++++++...+.+..++ .++ ......
T Consensus 56 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-- 132 (289)
T cd00200 56 DVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS-SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-- 132 (289)
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE-EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec--
Confidence 67777777 566777788898888432 3333332222344 788888888834443355677777 444 222111
Q ss_pred CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcCCCCEEE
Q 026118 89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSEDERFLV 167 (243)
Q Consensus 89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~dg~~l~ 167 (243)
.....+.++.+++++.++++.. ..+.|..+|..+++..... ........+.++++++.++
T Consensus 133 --~~~~~i~~~~~~~~~~~l~~~~-----------------~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 193 (289)
T cd00200 133 --GHTDWVNSVAFSPDGTFVASSS-----------------QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLL 193 (289)
T ss_pred --cCCCcEEEEEEcCcCCEEEEEc-----------------CCCcEEEEEccccccceeEecCccccceEEECCCcCEEE
Confidence 1123467888999887777632 1356888887755543332 2233567899999998777
Q ss_pred EEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118 168 VCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII 216 (243)
Q Consensus 168 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~ 216 (243)
++.. ++.|..|+...... ...+. .....+..+++++++.++++..
T Consensus 194 ~~~~-~~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 194 SSSS-DGTIKLWDLSTGKC--LGTLR-GHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EecC-CCcEEEEECCCCce--ecchh-hcCCceEEEEEcCCCcEEEEEc
Confidence 7754 78899998764211 11110 1122455678888777666655
No 48
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.50 E-value=0.00011 Score=62.45 Aligned_cols=179 Identities=12% Similarity=0.097 Sum_probs=100.8
Q ss_pred EEEcCCCc-EEEEe-C--CCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCC---CcEEEEe-cCC-cEEE
Q 026118 15 VSVDGNGV-LYTAT-G--DGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVS-EEG-VTVL 84 (243)
Q Consensus 15 i~~d~~g~-l~~~~-~--~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~---~gl~~~~-~~g-~~~~ 84 (243)
.++.++|+ |+++. . ...|+.++ .+++............ .+++++||+.++++... ..|+.++ .++ .+.+
T Consensus 195 p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l 273 (417)
T TIGR02800 195 PAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL 273 (417)
T ss_pred ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC
Confidence 44667774 44433 2 24578887 3455544433223334 67889999854544322 2488888 555 4433
Q ss_pred EeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCC
Q 026118 85 VSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE 163 (243)
Q Consensus 85 ~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg 163 (243)
... . .......++++|+ ++++... .....||.++.++++.+++.........++++++|
T Consensus 274 ~~~-~----~~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg 333 (417)
T TIGR02800 274 TNG-P----GIDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDG 333 (417)
T ss_pred CCC-C----CCCCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccCeEECCCC
Confidence 221 1 1112346788886 4444221 12237999999888777765444455678999999
Q ss_pred CEEEEEEcCC--CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEecCC
Q 026118 164 RFLVVCESWK--FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIKMD 219 (243)
Q Consensus 164 ~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~ 219 (243)
++++++.... ..|+.+++.+. ..+.+.. .......++.++|+ |+++...++
T Consensus 334 ~~i~~~~~~~~~~~i~~~d~~~~---~~~~l~~--~~~~~~p~~spdg~~l~~~~~~~~ 387 (417)
T TIGR02800 334 DLIAFVHREGGGFNIAVMDLDGG---GERVLTD--TGLDESPSFAPNGRMILYATTRGG 387 (417)
T ss_pred CEEEEEEccCCceEEEEEeCCCC---CeEEccC--CCCCCCceECCCCCEEEEEEeCCC
Confidence 9888876532 36788887652 2233321 11223456777776 555444433
No 49
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.49 E-value=0.00012 Score=57.63 Aligned_cols=190 Identities=11% Similarity=0.053 Sum_probs=113.3
Q ss_pred cCCcccEEEcCCC-cEEEEe-CCCcEEEEccCCceeEeccc--CCccccceEEccCCCEEEEEeCCC-cEEEEe--cCC-
Q 026118 9 VNHPEDVSVDGNG-VLYTAT-GDGWIKRMHPNGTWEDWHQV--GSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS--EEG- 80 (243)
Q Consensus 9 ~~~p~~i~~d~~g-~l~~~~-~~~~i~~~~~~g~~~~~~~~--~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~--~~g- 80 (243)
..+-.+++++++. +||..+ ..-.|..++.+|++..-... ...|. +|..-.+|.+ .+++... .++.+. ++.
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE-~Ieyig~n~f-vi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPE-TIEYIGGNQF-VIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChh-HeEEecCCEE-EEEehhcceEEEEEEcCCcc
Confidence 4567889999866 566554 45578888888886553321 23466 7777676666 6666543 455554 332
Q ss_pred cEEEEe-----ccCCCcccCCccEEEcCC-CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-cc---
Q 026118 81 VTVLVS-----QFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DG--- 150 (243)
Q Consensus 81 ~~~~~~-----~~~~~~~~~~~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~--- 150 (243)
+..+.. ......+-+..|++.|+. +++|++--. .--+||.++.....+..-. .+
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr----------------~P~~I~~~~~~~~~l~~~~~~~~~~ 226 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER----------------NPIGIFEVTQSPSSLSVHASLDPTA 226 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc----------------CCcEEEEEecCCcccccccccCccc
Confidence 222111 111112346678999994 678887321 1236887775422221110 00
Q ss_pred -----ccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCC------CCCCceEECCCCCEEEEEec
Q 026118 151 -----LYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLP------GGPDNVNLARDGSFWISIIK 217 (243)
Q Consensus 151 -----~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~d~~G~lwv~~~~ 217 (243)
..-..|+.+++..+.|+|-...+..|...+.++...+..... .+.. ..+.|+++|.+|+|||..--
T Consensus 227 ~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~-~g~~gL~~dipqaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 227 DRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLT-KGNHGLSSDIPQAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred ccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEec-cCCCCCcccCCCcceeEECCCCCEEEEecC
Confidence 123468999987777888878888899988877532222111 1111 25889999999999997643
No 50
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.49 E-value=6.5e-06 Score=75.55 Aligned_cols=153 Identities=20% Similarity=0.276 Sum_probs=96.9
Q ss_pred cccCCcccEEEcCCCcEEEEeCCCcEEEEccCCceeEec--------------------ccCCccccceEEccCCCEEEE
Q 026118 7 GIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWH--------------------QVGSQSLLGLTTTKENNVIIV 66 (243)
Q Consensus 7 g~~~~p~~i~~d~~g~l~~~~~~~~i~~~~~~g~~~~~~--------------------~~~~~~~~~i~~~~~g~l~~v 66 (243)
..+..|.+|++|.+|.||+++. -.|..+|.+|-+.... .....|. .++++|-.+-|+|
T Consensus 472 A~L~~PkGIa~dk~g~lYfaD~-t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT-~LaV~Pmdnsl~V 549 (1899)
T KOG4659|consen 472 AQLIFPKGIAFDKMGNLYFADG-TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPT-SLAVDPMDNSLLV 549 (1899)
T ss_pred ceeccCCceeEccCCcEEEecc-cEEEEeccCceEEEeccCCCCccCccccccccchhheeeeccc-ceeecCCCCeEEE
Confidence 3577899999999999999964 3577777666444321 0113577 8999986554488
Q ss_pred EeCCCcEEEEecCC-cEEEEecc-----C-----------CCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccC
Q 026118 67 CDSQQGLLKVSEEG-VTVLVSQF-----N-----------GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGE 129 (243)
Q Consensus 67 ~~~~~gl~~~~~~g-~~~~~~~~-----~-----------~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~ 129 (243)
-+. +=|++++..+ ++.+...+ + ...+..+.++++.++|.||++.+.. .
T Consensus 550 ld~-nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~--------------r 614 (1899)
T KOG4659|consen 550 LDT-NVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDG--------------R 614 (1899)
T ss_pred eec-ceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccc--------------h
Confidence 763 4567777655 54332111 0 0123356789999999999997642 1
Q ss_pred CCceEEEEeCCCCeeEEeec--------------------------cccccceEEEcCCCCEEEEEEcCCCeEEE
Q 026118 130 PHGVLLKYDPSTNQTSLVLD--------------------------GLYFANGVALSEDERFLVVCESWKFRCVK 178 (243)
Q Consensus 130 ~~g~v~~~~~~~~~~~~~~~--------------------------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~ 178 (243)
.-++|-++..+ |++..++. .+..|..+|++|||. +|+++.++-+|..
T Consensus 615 riNrvr~~~td-g~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~-v~IAD~gN~rIr~ 687 (1899)
T KOG4659|consen 615 RINRVRKLSTD-GTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGD-VIIADSGNSRIRK 687 (1899)
T ss_pred hhhheEEeccC-ceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCc-EEEecCCchhhhh
Confidence 22334444444 33333321 134578899999999 9999987655544
No 51
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.47 E-value=0.00012 Score=60.32 Aligned_cols=181 Identities=13% Similarity=0.138 Sum_probs=93.1
Q ss_pred CCcccEEEcCCC-cEEEEe-C-CCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEE--EecCC-cE
Q 026118 10 NHPEDVSVDGNG-VLYTAT-G-DGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLK--VSEEG-VT 82 (243)
Q Consensus 10 ~~p~~i~~d~~g-~l~~~~-~-~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~--~~~~g-~~ 82 (243)
..|..+++.+|| .||+.+ . +..|..+| ..+++..-...+. .. .+....+...+..|. +..... ++.+| ..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~-~vy~t~e~~~~~~~~-Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CY-HIFPTANDTFFMHCR-DGSLAKVGYGTKGNPK 181 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-Cc-EEEEecCCccEEEee-cCceEEEEecCCCceE
Confidence 345689999998 599888 3 67899999 4555544222212 12 222222222212222 222333 23334 11
Q ss_pred EEEe-ccCC---CcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-----e-e---
Q 026118 83 VLVS-QFNG---SQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-----V-L--- 148 (243)
Q Consensus 83 ~~~~-~~~~---~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-----~-~--- 148 (243)
.-.. .+.. .-...| .+.+ +|+.++.+ ..|.|+.+|..+..... . .
T Consensus 182 ~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs------------------~eG~V~~id~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHP---AYSNKSGRLVWPT------------------YTGKIFQIDLSSGDAKFLPAIEAFTEAE 240 (352)
T ss_pred EeeeeeecCCccccccCC---ceEcCCCcEEEEe------------------cCCeEEEEecCCCcceecceeeeccccc
Confidence 1100 1111 111223 2334 66644432 12689999854332221 1 1
Q ss_pred -ccccccce---EEEcCCCCEEEEEE---------cCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEE
Q 026118 149 -DGLYFANG---VALSEDERFLVVCE---------SWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWIS 214 (243)
Q Consensus 149 -~~~~~~~g---i~~~~dg~~l~v~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~ 214 (243)
.....|-| ++++++++.+||+. ...+.|+.+|..... ....+ .....|.+|++++||+ +.+.
T Consensus 241 ~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k--vi~~i--~vG~~~~~iavS~Dgkp~lyv 316 (352)
T TIGR02658 241 KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK--RLRKI--ELGHEIDSINVSQDAKPLLYA 316 (352)
T ss_pred cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe--EEEEE--eCCCceeeEEECCCCCeEEEE
Confidence 11234444 99999999999952 223689999975431 12222 1234688999999998 5554
Q ss_pred EecC
Q 026118 215 IIKM 218 (243)
Q Consensus 215 ~~~~ 218 (243)
+++.
T Consensus 317 tn~~ 320 (352)
T TIGR02658 317 LSTG 320 (352)
T ss_pred eCCC
Confidence 5543
No 52
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.44 E-value=0.00017 Score=61.74 Aligned_cols=155 Identities=9% Similarity=0.083 Sum_probs=86.9
Q ss_pred cEEEEccCCce-eEecccCCccccceEEccCCCEEEEEeCCC---cEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCC
Q 026118 31 WIKRMHPNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASD 104 (243)
Q Consensus 31 ~i~~~~~~g~~-~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~---gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 104 (243)
.|+..|.+|.. ..+... ..+....+++|||+.++++.... .|+.++ .+| .+.+.. ..+ .....+++||
T Consensus 177 ~L~~~D~dG~~~~~l~~~-~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-~~g----~~~~~~~SPD 250 (427)
T PRK02889 177 QLQISDADGQNAQSALSS-PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-FKG----SNSAPAWSPD 250 (427)
T ss_pred EEEEECCCCCCceEeccC-CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-CCC----CccceEECCC
Confidence 56666655543 222221 22333678899998644444332 388888 666 444432 111 2235689999
Q ss_pred Cc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC--CCeEEEEEe
Q 026118 105 GS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW--KFRCVKHFL 181 (243)
Q Consensus 105 G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~ 181 (243)
|+ +.++.+. .....||.++.+++..+++...........|+|||+.|+++... ...|+.++.
T Consensus 251 G~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~ 315 (427)
T PRK02889 251 GRTLAVALSR---------------DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA 315 (427)
T ss_pred CCEEEEEEcc---------------CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC
Confidence 96 5554322 12347999999877777765443344567899999988766432 346777765
Q ss_pred ecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118 182 KVSGRTDREIFIDNLPGGPDNVNLARDGS 210 (243)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~i~~d~~G~ 210 (243)
+++.. ..+.. ........+++++|+
T Consensus 316 ~~g~~--~~lt~--~g~~~~~~~~SpDG~ 340 (427)
T PRK02889 316 SGGAA--QRVTF--TGSYNTSPRISPDGK 340 (427)
T ss_pred CCCce--EEEec--CCCCcCceEECCCCC
Confidence 54321 11111 112223456777776
No 53
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.40 E-value=8.5e-05 Score=56.98 Aligned_cols=181 Identities=14% Similarity=0.124 Sum_probs=106.9
Q ss_pred CCcccEEEcCCCc-EEEEeCCCcEEEEccCC--ceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEE
Q 026118 10 NHPEDVSVDGNGV-LYTATGDGWIKRMHPNG--TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVL 84 (243)
Q Consensus 10 ~~p~~i~~d~~g~-l~~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~ 84 (243)
.+--.+.|--+|+ +|.+.++|.+..+|... ..+.+.. ..|...+.+.|+..-|++++..+.|..+| .+. ....
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~--~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH--NSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC--CCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 4445566666775 77777888888887221 1112222 24554788888765449998777899998 444 3221
Q ss_pred EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe----eEEee---ccccccceE
Q 026118 85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ----TSLVL---DGLYFANGV 157 (243)
Q Consensus 85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~----~~~~~---~~~~~~~gi 157 (243)
.. ++ ....+.++.+.+||.+.++-.. .|..|..+.-+.. ++++. ....+....
T Consensus 162 li-Pe--~~~~i~sl~v~~dgsml~a~nn-----------------kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C 221 (311)
T KOG0315|consen 162 LI-PE--DDTSIQSLTVMPDGSMLAAANN-----------------KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRC 221 (311)
T ss_pred cC-CC--CCcceeeEEEcCCCcEEEEecC-----------------CccEEEEEccCCCccccceEhhheecccceEEEE
Confidence 11 11 1256778999999998877432 3566666654332 22221 122344567
Q ss_pred EEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEE
Q 026118 158 ALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISI 215 (243)
Q Consensus 158 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~ 215 (243)
.+|||+++|..+ ..+..+..++.++- +.. +.....-....-+-+++.||+..|..
T Consensus 222 ~lSPd~k~lat~-ssdktv~iwn~~~~-~kl-e~~l~gh~rWvWdc~FS~dg~YlvTa 276 (311)
T KOG0315|consen 222 LLSPDVKYLATC-SSDKTVKIWNTDDF-FKL-ELVLTGHQRWVWDCAFSADGEYLVTA 276 (311)
T ss_pred EECCCCcEEEee-cCCceEEEEecCCc-eee-EEEeecCCceEEeeeeccCccEEEec
Confidence 899999966655 45688888887764 211 11111222344557888888755543
No 54
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=98.38 E-value=5.6e-06 Score=53.60 Aligned_cols=82 Identities=29% Similarity=0.436 Sum_probs=56.6
Q ss_pred cEEEcCCCcEEEEeCCCCCCccccc-ccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeE
Q 026118 98 DVIEASDGSLYFTVSSTKFTPAEYY-LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRC 176 (243)
Q Consensus 98 ~l~~d~~G~l~v~~~~~~~~~~~~~-~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i 176 (243)
+|+.-...++|+|+.+. |...... ..+......+.|+.|++. +.+.++.+...||||++++++++|||++...+.|
T Consensus 2 DIvavG~~sFy~TNDhy-f~~~~l~~lE~~l~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I 78 (86)
T PF01731_consen 2 DIVAVGPDSFYVTNDHY-FTDPFLRLLETYLGLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLAHSI 78 (86)
T ss_pred CEEEECcCcEEEECchh-hCcHHHHHHHHHhcCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccCCeE
Confidence 34444445688887642 2211100 112223345678889985 6777888899999999999999999999999999
Q ss_pred EEEEee
Q 026118 177 VKHFLK 182 (243)
Q Consensus 177 ~~~~~~ 182 (243)
..|..+
T Consensus 79 ~vy~~~ 84 (86)
T PF01731_consen 79 HVYKRH 84 (86)
T ss_pred EEEEec
Confidence 998764
No 55
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.38 E-value=2.4e-05 Score=69.06 Aligned_cols=176 Identities=18% Similarity=0.153 Sum_probs=110.3
Q ss_pred CCCc-EEEEeCCCcEEEEccCCc------ee-EecccCCccccceEEccCCCEEEEEeCCC-cEEEEecCC--cEEEEec
Q 026118 19 GNGV-LYTATGDGWIKRMHPNGT------WE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG--VTVLVSQ 87 (243)
Q Consensus 19 ~~g~-l~~~~~~~~i~~~~~~g~------~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~~~g--~~~~~~~ 87 (243)
+-|+ |.++ ..+.|.++..++. .+ .+..+...+. ||.||=..+++|+++... .|.+-...| .+.+..
T Consensus 988 ~~gt~LL~a-qg~~I~~lplng~~~~K~~ak~~l~~p~~IiV-GidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n- 1064 (1289)
T KOG1214|consen 988 SVGTFLLYA-QGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIV-GIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVN- 1064 (1289)
T ss_pred CCcceEEEe-ccceEEEeecCcchhchhhhhceEecccceee-eeecccccceEEEeecCCCccccccccCCCCceeec-
Confidence 4454 4444 5567887764332 11 1223334567 999985445547766543 344444334 444443
Q ss_pred cCCCcccCCccEEEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEE
Q 026118 88 FNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFL 166 (243)
Q Consensus 88 ~~~~~~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l 166 (243)
+.+..|.+|++|.-+ ++|++|+- ...-.+..+|.. .+...+.+++-.|.+|++|+=+..|
T Consensus 1065 ---~~L~SPEGiAVDh~~Rn~ywtDS~---------------lD~IevA~LdG~-~rkvLf~tdLVNPR~iv~D~~rgnL 1125 (1289)
T KOG1214|consen 1065 ---SGLISPEGIAVDHIRRNMYWTDSV---------------LDKIEVALLDGS-ERKVLFYTDLVNPRAIVVDPIRGNL 1125 (1289)
T ss_pred ---ccCCCccceeeeeccceeeeeccc---------------cchhheeecCCc-eeeEEEeecccCcceEEeecccCce
Confidence 235678999999855 69999864 112346666643 2222345788899999999977779
Q ss_pred EEEEcCC--CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC--EEEEEecCC
Q 026118 167 VVCESWK--FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS--FWISIIKMD 219 (243)
Q Consensus 167 ~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~--lwv~~~~~~ 219 (243)
|+++..+ -.|-+-+.++ .+.+++....-++|+||.+|+.-+ .||-....+
T Consensus 1126 YwtDWnRenPkIets~mDG---~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~r 1179 (1289)
T KOG1214|consen 1126 YWTDWNRENPKIETSSMDG---ENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKR 1179 (1289)
T ss_pred eeccccccCCcceeeccCC---ccceEEeecccCCCCCceeCcccceeeEEecCCcc
Confidence 9998754 4566666666 456777766778999999998876 487443333
No 56
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.37 E-value=1.3e-05 Score=66.11 Aligned_cols=157 Identities=17% Similarity=0.239 Sum_probs=89.0
Q ss_pred CccccceEEccCCCEEEEEeCCCcEEEEecCC-c-EEEEec--cCCCcccCCccEEEcCC----CcEEEEeCCCCCCccc
Q 026118 49 SQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-V-TVLVSQ--FNGSQLRFANDVIEASD----GSLYFTVSSTKFTPAE 120 (243)
Q Consensus 49 ~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g-~-~~~~~~--~~~~~~~~~~~l~~d~~----G~l~v~~~~~~~~~~~ 120 (243)
.+|. +|++.|||++ ||+...+.|++++.++ . ..+... ..........+++++|+ +.+|+.-+..
T Consensus 2 ~~P~-~~a~~pdG~l-~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~------ 73 (331)
T PF07995_consen 2 NNPR-SMAFLPDGRL-LVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNA------ 73 (331)
T ss_dssp SSEE-EEEEETTSCE-EEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE------
T ss_pred CCce-EEEEeCCCcE-EEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcc------
Confidence 3577 9999999999 9988755677777556 3 333321 22223456778999985 7888874310
Q ss_pred ccccccccCCCceEEEEeCCCC--e---eEEeecc-------ccccceEEEcCCCCEEEEEEc-------------CCCe
Q 026118 121 YYLDLVSGEPHGVLLKYDPSTN--Q---TSLVLDG-------LYFANGVALSEDERFLVVCES-------------WKFR 175 (243)
Q Consensus 121 ~~~~~~~~~~~g~v~~~~~~~~--~---~~~~~~~-------~~~~~gi~~~~dg~~l~v~~~-------------~~~~ 175 (243)
..........|.|+..+.+ . .+.+... .....+|+|.|||+ ||++.- ..+.
T Consensus 74 ---~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~~~~~~~~~~~~~~~G~ 149 (331)
T PF07995_consen 74 ---DEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGDGGNDDNAQDPNSLRGK 149 (331)
T ss_dssp ----TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-TTTGGGGCSTTSSTTE
T ss_pred ---cCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCCCCCcccccccccccce
Confidence 0000112245766655433 2 2222111 12235699999995 999842 2367
Q ss_pred EEEEEeecCC-----C-----cceEEeccCCCCCCCceEECCC-CCEEEEEecC
Q 026118 176 CVKHFLKVSG-----R-----TDREIFIDNLPGGPDNVNLARD-GSFWISIIKM 218 (243)
Q Consensus 176 i~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~i~~d~~-G~lwv~~~~~ 218 (243)
|.|++.++.. . ...++++.+. .-|-+|++|+. |+||+++++.
T Consensus 150 ilri~~dG~~p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~ 202 (331)
T PF07995_consen 150 ILRIDPDGSIPADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGP 202 (331)
T ss_dssp EEEEETTSSB-TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-S
T ss_pred EEEecccCcCCCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCC
Confidence 8998876520 0 1223333221 12677999999 9999998754
No 57
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.37 E-value=0.00027 Score=60.51 Aligned_cols=177 Identities=15% Similarity=0.124 Sum_probs=98.3
Q ss_pred ccEEEcCCCc-EE-EEeC--CCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCC---cEEEEe-cCC-cE
Q 026118 13 EDVSVDGNGV-LY-TATG--DGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVS-EEG-VT 82 (243)
Q Consensus 13 ~~i~~d~~g~-l~-~~~~--~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~---gl~~~~-~~g-~~ 82 (243)
.++++.+||+ |. ++.. +..|+.++ ..++.+.+....+... .++++|||+.|+++.... .|+.++ .++ .+
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~ 285 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS 285 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE
Confidence 4567778884 43 3332 23588888 3454443332223333 678999998645543222 377778 555 44
Q ss_pred EEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcC
Q 026118 83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE 161 (243)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~ 161 (243)
.+... ........++|||+ ++++... .....||.++..++..+.+. ... ..+.++|
T Consensus 286 ~lt~~-----~~~~~~~~wSpDG~~i~f~s~~---------------~g~~~I~~~~~~~~~~~~l~-~~~--~~~~~Sp 342 (429)
T PRK01742 286 QLTSG-----AGNNTEPSWSPDGQSILFTSDR---------------SGSPQVYRMSASGGGASLVG-GRG--YSAQISA 342 (429)
T ss_pred eeccC-----CCCcCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEec-CCC--CCccCCC
Confidence 43221 11234668999997 5554221 12247899988766555542 212 3467999
Q ss_pred CCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEE-EEecCCc
Q 026118 162 DERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWI-SIIKMDP 220 (243)
Q Consensus 162 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv-~~~~~~~ 220 (243)
||++++++.. ..++++|..++. .+.+... .......++++|++.+ +...++.
T Consensus 343 DG~~ia~~~~--~~i~~~Dl~~g~---~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~ 395 (429)
T PRK01742 343 DGKTLVMING--DNVVKQDLTSGS---TEVLSST--FLDESPSISPNGIMIIYSSTQGLG 395 (429)
T ss_pred CCCEEEEEcC--CCEEEEECCCCC---eEEecCC--CCCCCceECCCCCEEEEEEcCCCc
Confidence 9998877743 568888876532 2222111 1123466788887443 3444433
No 58
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.36 E-value=7.7e-05 Score=63.41 Aligned_cols=164 Identities=16% Similarity=0.151 Sum_probs=91.5
Q ss_pred EecccCCccccceEEccCCCEEEEEeCC-CcEEEEec-CC-cEEEEe---ccCCCcccCCccEEEcCC-------CcEEE
Q 026118 43 DWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE-EG-VTVLVS---QFNGSQLRFANDVIEASD-------GSLYF 109 (243)
Q Consensus 43 ~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~~-~g-~~~~~~---~~~~~~~~~~~~l~~d~~-------G~l~v 109 (243)
.+......|. +|++.+||++ ||+... +.|+++++ ++ .+.+.. .........+.+|+++|+ +.+|+
T Consensus 24 ~va~GL~~Pw-~maflPDG~l-lVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYv 101 (454)
T TIGR03606 24 VLLSGLNKPW-ALLWGPDNQL-WVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYI 101 (454)
T ss_pred EEECCCCCce-EEEEcCCCeE-EEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEE
Confidence 3444446788 9999999998 888763 56888873 34 322221 111112356678999876 35888
Q ss_pred EeCCCCCCcccccccccccCCCceEEEEeCC--CCe---eEEeeccc-----cccceEEEcCCCCEEEEEEcCC------
Q 026118 110 TVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS--TNQ---TSLVLDGL-----YFANGVALSEDERFLVVCESWK------ 173 (243)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~--~~~---~~~~~~~~-----~~~~gi~~~~dg~~l~v~~~~~------ 173 (243)
+-+...-+ ........|.|+..+ +.. .+.+.... ..-..|+|+|||+ ||++.-..
T Consensus 102 syt~~~~~--------~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~g~~~~~ 172 (454)
T TIGR03606 102 SYTYKNGD--------KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQGRNQGA 172 (454)
T ss_pred EEeccCCC--------CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCCCCCCcc
Confidence 73210000 000013467776543 111 12222221 1234699999998 99963221
Q ss_pred --------------------------CeEEEEEeecCC-----C---cceEEeccCCCCCCCceEECCCCCEEEEEecC
Q 026118 174 --------------------------FRCVKHFLKVSG-----R---TDREIFIDNLPGGPDNVNLARDGSFWISIIKM 218 (243)
Q Consensus 174 --------------------------~~i~~~~~~~~~-----~---~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~ 218 (243)
+.|+|++.++.. + ...+++..+. .-|-+|++|++|+||++.+..
T Consensus 173 n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~-RNp~Gla~dp~G~Lw~~e~Gp 250 (454)
T TIGR03606 173 NFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGH-RNPQGLAFTPDGTLYASEQGP 250 (454)
T ss_pred cccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEec-cccceeEECCCCCEEEEecCC
Confidence 257888776521 0 0123443211 137789999999999988654
No 59
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.35 E-value=0.00014 Score=62.23 Aligned_cols=155 Identities=11% Similarity=0.112 Sum_probs=87.6
Q ss_pred cEEEEccCCc-eeEecccCCccccceEEccCCCEEEEEeCCC---cEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCC
Q 026118 31 WIKRMHPNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASD 104 (243)
Q Consensus 31 ~i~~~~~~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~---gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 104 (243)
.|+.+|.++. ...+... ..+..+.++++||+.++++.... .|+.++ .++ .+.+.. ..+ ....+.++||
T Consensus 185 ~l~i~D~~g~~~~~lt~~-~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~-~~g----~~~~~~~SpD 258 (433)
T PRK04922 185 ALQVADSDGYNPQTILRS-AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS-FRG----INGAPSFSPD 258 (433)
T ss_pred EEEEECCCCCCceEeecC-CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc-CCC----CccCceECCC
Confidence 3555664443 2222221 22232678889998545444322 388888 566 444332 111 1235688999
Q ss_pred Cc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCC--CeEEEEEe
Q 026118 105 GS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK--FRCVKHFL 181 (243)
Q Consensus 105 G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~--~~i~~~~~ 181 (243)
|+ ++++.+. .....||.++.++++.+++...........|++||+.|+++.... ..|+.++.
T Consensus 259 G~~l~~~~s~---------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl 323 (433)
T PRK04922 259 GRRLALTLSR---------------DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAA 323 (433)
T ss_pred CCEEEEEEeC---------------CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 96 5554321 122469999999888777654444445689999999887765332 45888877
Q ss_pred ecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118 182 KVSGRTDREIFIDNLPGGPDNVNLARDGS 210 (243)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~i~~d~~G~ 210 (243)
+++.. +.+.. ........+++++|+
T Consensus 324 ~~g~~---~~lt~-~g~~~~~~~~SpDG~ 348 (433)
T PRK04922 324 SGGSA---ERLTF-QGNYNARASVSPDGK 348 (433)
T ss_pred CCCCe---EEeec-CCCCccCEEECCCCC
Confidence 65322 22211 112233467777776
No 60
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.35 E-value=0.00019 Score=57.48 Aligned_cols=158 Identities=14% Similarity=0.149 Sum_probs=95.2
Q ss_pred EEEcCCCc-EEEEeC-----CCcEEEEccCC---ceeEecccCCccccceEEccCCCEEEEEeCC---------------
Q 026118 15 VSVDGNGV-LYTATG-----DGWIKRMHPNG---TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ--------------- 70 (243)
Q Consensus 15 i~~d~~g~-l~~~~~-----~~~i~~~~~~g---~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~--------------- 70 (243)
-++++||+ ||++.+ .|.|-.+|... ++..|......|. -|.+.+||+.|.|++.+
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH-el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPH-ELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChh-hEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 46677885 555542 35677777443 3344555455677 88999999655888742
Q ss_pred ---CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE
Q 026118 71 ---QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS 145 (243)
Q Consensus 71 ---~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~ 145 (243)
..|..+| .+| .......+......++..|+++++|.+|++... .-.. ...-.-|...... +.++
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~---qg~~-------~~~~PLva~~~~g-~~~~ 203 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQY---QGDP-------GDAPPLVALHRRG-GALR 203 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEec---CCCC-------CccCCeEEEEcCC-Ccce
Confidence 1366776 666 222222222233457889999999999998532 1000 0111235555554 3333
Q ss_pred Eeec--c-----ccccceEEEcCCCCEEEEEEcCCCeEEEEEeecC
Q 026118 146 LVLD--G-----LYFANGVALSEDERFLVVCESWKFRCVKHFLKVS 184 (243)
Q Consensus 146 ~~~~--~-----~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~ 184 (243)
.+.- . ..+.-+|+++++|+.+.++....+.+..+|...+
T Consensus 204 ~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 204 LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred eccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 3321 1 1345679999999988888888888999987654
No 61
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.30 E-value=0.00062 Score=58.30 Aligned_cols=155 Identities=17% Similarity=0.135 Sum_probs=88.1
Q ss_pred cEEEEccCCc-eeEecccCCccccceEEccCCCEEEEEeCC---CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCC
Q 026118 31 WIKRMHPNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASD 104 (243)
Q Consensus 31 ~i~~~~~~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~---~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 104 (243)
.|+..|.+|. ...+.. ...+.....++|||+.+.+.... ..++.++ .+| .+.+.. ..+ ....++++||
T Consensus 180 ~l~~~d~dg~~~~~lt~-~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~~----~~~~~~~SPD 253 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPR----HNGAPAFSPD 253 (429)
T ss_pred eEEEEcCCCCCCEEeec-CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CCC----CcCCeEECCC
Confidence 4666664443 222222 12233378899999853333222 3477777 556 444332 111 2235689999
Q ss_pred Cc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC--CCeEEEEEe
Q 026118 105 GS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW--KFRCVKHFL 181 (243)
Q Consensus 105 G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~ 181 (243)
|+ |.++.+. .....||.+|.++++.+++...........|+|||+.|+++... ...|++++.
T Consensus 254 G~~La~~~~~---------------~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 254 GSKLAFALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred CCEEEEEEcC---------------CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 97 5554221 11236999999988888776554455678999999988665432 247888887
Q ss_pred ecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118 182 KVSGRTDREIFIDNLPGGPDNVNLARDGS 210 (243)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~i~~d~~G~ 210 (243)
++... +.+. .........+++++|+
T Consensus 319 ~~g~~---~~lt-~~~~~~~~~~~SpDG~ 343 (429)
T PRK03629 319 NGGAP---QRIT-WEGSQNQDADVSSDGK 343 (429)
T ss_pred CCCCe---EEee-cCCCCccCEEECCCCC
Confidence 65322 2221 1112233466677776
No 62
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.30 E-value=0.00011 Score=64.11 Aligned_cols=172 Identities=10% Similarity=0.048 Sum_probs=102.0
Q ss_pred CCCc-EEEEe-CCCcEEEEccC-CceeEecccCCccccceEEccCCCEEEEEeCC----CcEEEEe-cCC-cEEEEeccC
Q 026118 19 GNGV-LYTAT-GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ----QGLLKVS-EEG-VTVLVSQFN 89 (243)
Q Consensus 19 ~~g~-l~~~~-~~~~i~~~~~~-g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~----~gl~~~~-~~g-~~~~~~~~~ 89 (243)
+||. |+... ..+.+..+|.+ -++..-....++|. .+.++++|+++|++... .-+..++ .+. ...... +.
T Consensus 202 nDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd-~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn-i~ 279 (635)
T PRK02888 202 NDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLD-NVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN-IA 279 (635)
T ss_pred CCCCEeecccceeEEEEEEECccceEEEEEEeCCCcc-cceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc-hH
Confidence 3553 33332 34456666633 22222223346777 88999999998888632 1244444 222 211111 11
Q ss_pred CCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCC-----CeeEEeeccccccceEEEcCCC
Q 026118 90 GSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-----NQTSLVLDGLYFANGVALSEDE 163 (243)
Q Consensus 90 ~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~-----~~~~~~~~~~~~~~gi~~~~dg 163 (243)
. .. +..++|+ .|+. .+.|..+|..+ .++.........|.|+.++|||
T Consensus 280 ~-----ie--a~vkdGK~~~V~--------------------gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDG 332 (635)
T PRK02888 280 R-----IE--EAVKAGKFKTIG--------------------GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDG 332 (635)
T ss_pred H-----HH--HhhhCCCEEEEC--------------------CCEEEEEECCccccCCcceEEEEECCCCccceEECCCC
Confidence 0 00 2234565 4442 13688899886 3445555566789999999999
Q ss_pred CEEEEEEcCCCeEEEEEeecC------CCcceE-Eecc-CCCCCCCceEECCCCCEEEEEecCC
Q 026118 164 RFLVVCESWKFRCVKHFLKVS------GRTDRE-IFID-NLPGGPDNVNLARDGSFWISIIKMD 219 (243)
Q Consensus 164 ~~l~v~~~~~~~i~~~~~~~~------~~~~~~-~~~~-~~~~~~~~i~~d~~G~lwv~~~~~~ 219 (243)
+++|+++..++.+..||...- .+.-.. +... ...-.|--.++|.+|+.|.+.+-.+
T Consensus 333 kylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~ds 396 (635)
T PRK02888 333 KYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDS 396 (635)
T ss_pred CEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecc
Confidence 999999999999999998642 111111 1111 1223577899999999999887655
No 63
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.30 E-value=0.00061 Score=58.66 Aligned_cols=138 Identities=11% Similarity=0.046 Sum_probs=81.4
Q ss_pred ceEEccCCCEEEEEeCC---CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccc
Q 026118 54 GLTTTKENNVIIVCDSQ---QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVS 127 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~~~---~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~ 127 (243)
...++|||+.++++... ..|+.++ .++ .+.+.. ..+ .....+++|||+ ++++.+.
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~-~~g----~~~~~~wSPDG~~La~~~~~-------------- 282 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS-FPG----INGAPRFSPDGKKLALVLSK-------------- 282 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-CCC----CcCCeeECCCCCEEEEEEeC--------------
Confidence 67889999854443322 2488888 556 444332 111 122568899997 5554221
Q ss_pred cCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC--CCeEEEEEeecCCCcceEEeccCCCCCCCceEE
Q 026118 128 GEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW--KFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNL 205 (243)
Q Consensus 128 ~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 205 (243)
.....||.+|.++++.+++..........+|+|||++|+++... ...|++++.+++.. +.+.. ........++
T Consensus 283 -~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt~-~g~~~~~~~~ 357 (448)
T PRK04792 283 -DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLTF-EGEQNLGGSI 357 (448)
T ss_pred -CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEec-CCCCCcCeeE
Confidence 12246999999988887776544455668999999988776543 35688888765322 21111 1112223566
Q ss_pred CCCCC-EEEEE
Q 026118 206 ARDGS-FWISI 215 (243)
Q Consensus 206 d~~G~-lwv~~ 215 (243)
+++|+ |++..
T Consensus 358 SpDG~~l~~~~ 368 (448)
T PRK04792 358 TPDGRSMIMVN 368 (448)
T ss_pred CCCCCEEEEEE
Confidence 77776 44433
No 64
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.25 E-value=0.00016 Score=56.72 Aligned_cols=151 Identities=16% Similarity=0.127 Sum_probs=82.8
Q ss_pred ccCCcccEEEcCCCcEEEEe-CCCcEEEEcc--CCc------eeEecccC---Cc--cccceEEccCCCEEEEEeCC--C
Q 026118 8 IVNHPEDVSVDGNGVLYTAT-GDGWIKRMHP--NGT------WEDWHQVG---SQ--SLLGLTTTKENNVIIVCDSQ--Q 71 (243)
Q Consensus 8 ~~~~p~~i~~d~~g~l~~~~-~~~~i~~~~~--~g~------~~~~~~~~---~~--~~~~i~~~~~g~l~~v~~~~--~ 71 (243)
.+..||+|++-.++.+.++. ..+.++.+.. +++ +..+.... .+ .. |+++|+.++.||++-.. .
T Consensus 63 g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~E-Gla~D~~~~~L~v~kE~~P~ 141 (248)
T PF06977_consen 63 GFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFE-GLAYDPKTNRLFVAKERKPK 141 (248)
T ss_dssp S-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--E-EEEEETTTTEEEEEEESSSE
T ss_pred CCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceE-EEEEcCCCCEEEEEeCCCCh
Confidence 47789999999888877777 4677877762 221 12222111 11 24 89999876655777644 2
Q ss_pred cEEEEec--CC--cEEEEe-c-c-CCCcccCCccEEEcCC-CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe
Q 026118 72 GLLKVSE--EG--VTVLVS-Q-F-NGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ 143 (243)
Q Consensus 72 gl~~~~~--~g--~~~~~~-~-~-~~~~~~~~~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~ 143 (243)
+|+.++. .. ...... . . .......+.++.++|. |++|+-.. .+..|..+|.+ |+
T Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~-----------------es~~l~~~d~~-G~ 203 (248)
T PF06977_consen 142 RLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSD-----------------ESRLLLELDRQ-GR 203 (248)
T ss_dssp EEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEET-----------------TTTEEEEE-TT---
T ss_pred hhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEEC-----------------CCCeEEEECCC-CC
Confidence 5777762 22 222211 1 1 1222345778999984 78888632 23578999987 65
Q ss_pred eEEe---ec-------cccccceEEEcCCCCEEEEEEcCCCeEEEE
Q 026118 144 TSLV---LD-------GLYFANGVALSEDERFLVVCESWKFRCVKH 179 (243)
Q Consensus 144 ~~~~---~~-------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~ 179 (243)
+... .. ....|-||+++++|+ |||++. .+..++|
T Consensus 204 ~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsE-pNlfy~f 247 (248)
T PF06977_consen 204 VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSE-PNLFYRF 247 (248)
T ss_dssp EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEET-TTEEEEE
T ss_pred EEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcC-CceEEEe
Confidence 4432 12 235688999999998 999975 5677776
No 65
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=98.24 E-value=6.6e-05 Score=62.43 Aligned_cols=163 Identities=16% Similarity=0.169 Sum_probs=88.2
Q ss_pred ceecccccCCcccEEEcCCCcEEEEeCC-CcEEEEccCCce--------eEeccc----------------CCccccceE
Q 026118 2 IKLGEGIVNHPEDVSVDGNGVLYTATGD-GWIKRMHPNGTW--------EDWHQV----------------GSQSLLGLT 56 (243)
Q Consensus 2 ~~~~~g~~~~p~~i~~d~~g~l~~~~~~-~~i~~~~~~g~~--------~~~~~~----------------~~~~~~~i~ 56 (243)
+.+++| +..|.+++..++|.+.+.... +.+..+...+.. ...... ...+. +++
T Consensus 60 ~~~a~g-Le~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~-~~a 137 (399)
T COG2133 60 EVVAQG-LEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYF-GIS 137 (399)
T ss_pred cccccc-ccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeee-EEE
Confidence 345666 889999999999966666543 666555422111 011100 01122 333
Q ss_pred EccCCCEEEEEeCCCcEEEEe-cCC----cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCC
Q 026118 57 TTKENNVIIVCDSQQGLLKVS-EEG----VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPH 131 (243)
Q Consensus 57 ~~~~g~l~~v~~~~~gl~~~~-~~g----~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~ 131 (243)
+ ..+.+ |+++. ..+.+++ .+. .+.+....++..+..-..|+++|||+||++.-+.......++ . ....
T Consensus 138 ~-~~~~~-~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~--~--~~~~ 210 (399)
T COG2133 138 E-PGGGL-YVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQD--N--VSLA 210 (399)
T ss_pred e-ecCCc-eEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccC--c--cccc
Confidence 3 22333 45442 3456665 211 233443333333455667999999999998644211111110 0 1122
Q ss_pred ceEEE--------EeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCC
Q 026118 132 GVLLK--------YDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK 173 (243)
Q Consensus 132 g~v~~--------~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~ 173 (243)
+.+++ .|+.+...+....++..|+|++++|....||+++-..
T Consensus 211 Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~ 260 (399)
T COG2133 211 GKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGP 260 (399)
T ss_pred cceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCC
Confidence 33444 4444444455566778899999999844499998665
No 66
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.24 E-value=0.00077 Score=57.70 Aligned_cols=132 Identities=19% Similarity=0.187 Sum_probs=78.1
Q ss_pred EEEEccCCc-eeEecccCCccccceEEccCCCEE-EEEeCC--CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCC
Q 026118 32 IKRMHPNGT-WEDWHQVGSQSLLGLTTTKENNVI-IVCDSQ--QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDG 105 (243)
Q Consensus 32 i~~~~~~g~-~~~~~~~~~~~~~~i~~~~~g~l~-~v~~~~--~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G 105 (243)
|+..|.+|. ...+... ..+.....++|||+.+ |+.... ..|+.++ .+| .+.+.. ..+ ......++|||
T Consensus 181 l~~~d~~g~~~~~l~~~-~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-~~g----~~~~~~~SpDG 254 (430)
T PRK00178 181 LQRSDYDGARAVTLLQS-REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-FEG----LNGAPAWSPDG 254 (430)
T ss_pred EEEECCCCCCceEEecC-CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-CCC----CcCCeEECCCC
Confidence 555565443 2222222 2232267888999854 443322 2488888 666 444322 111 12246889998
Q ss_pred c-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC--CCeEEEEEee
Q 026118 106 S-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW--KFRCVKHFLK 182 (243)
Q Consensus 106 ~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~~ 182 (243)
+ ++++.+. .....||.+|.++++.+++...........|+|||+.++++... ...|+.++..
T Consensus 255 ~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~ 319 (430)
T PRK00178 255 SKLAFVLSK---------------DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN 319 (430)
T ss_pred CEEEEEEcc---------------CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC
Confidence 6 5554322 11247999999988877765544445567899999988776533 3468888876
Q ss_pred cC
Q 026118 183 VS 184 (243)
Q Consensus 183 ~~ 184 (243)
++
T Consensus 320 ~g 321 (430)
T PRK00178 320 GG 321 (430)
T ss_pred CC
Confidence 53
No 67
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.23 E-value=0.00023 Score=62.41 Aligned_cols=187 Identities=11% Similarity=0.050 Sum_probs=110.3
Q ss_pred ccEEEcCCCcEE-EEeCCCcEEEEc-c-CCceeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEe-cCC-cEEEEe
Q 026118 13 EDVSVDGNGVLY-TATGDGWIKRMH-P-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-EEG-VTVLVS 86 (243)
Q Consensus 13 ~~i~~d~~g~l~-~~~~~~~i~~~~-~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~~g-~~~~~~ 86 (243)
.++.+..+|+.. .+.-+|.|..+| . -..++++..+.......++.|+.|.++.++... -.|+.+. .+| ...+..
T Consensus 396 t~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs 475 (893)
T KOG0291|consen 396 TAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS 475 (893)
T ss_pred EEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc
Confidence 345666666544 444788888888 2 234566655444445479999999994444432 2578888 788 332222
Q ss_pred ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEE
Q 026118 87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFL 166 (243)
Q Consensus 87 ~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l 166 (243)
..+ ..+.++.++++|++.++-+.. ..-++|-+=...++.+.+.. .....+++|.|||+-|
T Consensus 476 GHE----gPVs~l~f~~~~~~LaS~SWD---------------kTVRiW~if~s~~~vEtl~i-~sdvl~vsfrPdG~el 535 (893)
T KOG0291|consen 476 GHE----GPVSGLSFSPDGSLLASGSWD---------------KTVRIWDIFSSSGTVETLEI-RSDVLAVSFRPDGKEL 535 (893)
T ss_pred CCC----CcceeeEEccccCeEEecccc---------------ceEEEEEeeccCceeeeEee-ccceeEEEEcCCCCeE
Confidence 112 235678999999988875431 22355543333366666532 2335678999999999
Q ss_pred EEEEcCCCeEEEEEeecC-CCcce-------------EEeccC---CCCCCCceEECCCCCEEEEEecCCc
Q 026118 167 VVCESWKFRCVKHFLKVS-GRTDR-------------EIFIDN---LPGGPDNVNLARDGSFWISIIKMDP 220 (243)
Q Consensus 167 ~v~~~~~~~i~~~~~~~~-~~~~~-------------~~~~~~---~~~~~~~i~~d~~G~lwv~~~~~~~ 220 (243)
-|+. .+++|..||.... ..+.. ..+... .......|+.+.||...++.....+
T Consensus 536 aVaT-ldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~ 605 (893)
T KOG0291|consen 536 AVAT-LDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNS 605 (893)
T ss_pred EEEE-ecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCccc
Confidence 9885 4678988887521 11100 011000 1112345888999998777655443
No 68
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=0.0011 Score=52.54 Aligned_cols=179 Identities=9% Similarity=0.055 Sum_probs=95.4
Q ss_pred CcccEEEcC-CCc-EEEEe-CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeC-CCcEEEEe-cCC-cEE
Q 026118 11 HPEDVSVDG-NGV-LYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS-QQGLLKVS-EEG-VTV 83 (243)
Q Consensus 11 ~p~~i~~d~-~g~-l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~-~~gl~~~~-~~g-~~~ 83 (243)
+++.+.+.. ... ++.++ .+..|..++ -+.+..++-........+|..+|.++. |+... ++-|..+| +.. ...
T Consensus 58 G~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~-FlS~S~D~tvrLWDlR~~~cqg 136 (311)
T KOG1446|consen 58 GVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDT-FLSSSLDKTVRLWDLRVKKCQG 136 (311)
T ss_pred cccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCe-EEecccCCeEEeeEecCCCCce
Confidence 455556653 333 44443 456677777 345544443322233338888888888 55543 34566777 422 222
Q ss_pred EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCC---CeeEEe--e-ccccccceE
Q 026118 84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST---NQTSLV--L-DGLYFANGV 157 (243)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~---~~~~~~--~-~~~~~~~gi 157 (243)
+.. .....-.++||+|-++..-.+ +..|-.||... |-.+.+ . ......+.|
T Consensus 137 ~l~------~~~~pi~AfDp~GLifA~~~~-----------------~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l 193 (311)
T KOG1446|consen 137 LLN------LSGRPIAAFDPEGLIFALANG-----------------SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDL 193 (311)
T ss_pred EEe------cCCCcceeECCCCcEEEEecC-----------------CCeEEEEEecccCCCCceeEccCCCCccceeee
Confidence 221 122335589999977766432 22565666543 222222 1 234456789
Q ss_pred EEcCCCCEEEEEEcCCCeEEEEEeecCCC-cceEEeccCCCCCCCceEECCCCCEEEEE
Q 026118 158 ALSEDERFLVVCESWKFRCVKHFLKVSGR-TDREIFIDNLPGGPDNVNLARDGSFWISI 215 (243)
Q Consensus 158 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~d~~G~lwv~~ 215 (243)
.|++||++|.+++. .+.++.+|.-.+.. ...+.. ......|-..++.+||+..++.
T Consensus 194 ~FS~dGK~iLlsT~-~s~~~~lDAf~G~~~~tfs~~-~~~~~~~~~a~ftPds~Fvl~g 250 (311)
T KOG1446|consen 194 EFSPDGKSILLSTN-ASFIYLLDAFDGTVKSTFSGY-PNAGNLPLSATFTPDSKFVLSG 250 (311)
T ss_pred EEcCCCCEEEEEeC-CCcEEEEEccCCcEeeeEeec-cCCCCcceeEEECCCCcEEEEe
Confidence 99999999998864 56777777543322 111221 1222234445555666544443
No 69
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.22 E-value=0.0012 Score=56.49 Aligned_cols=172 Identities=15% Similarity=0.084 Sum_probs=89.9
Q ss_pred EEEcCCCc----EEEEeC--CCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCC---cEEE--Ee-cC--
Q 026118 15 VSVDGNGV----LYTATG--DGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLK--VS-EE-- 79 (243)
Q Consensus 15 i~~d~~g~----l~~~~~--~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~---gl~~--~~-~~-- 79 (243)
..+.|||. +|++.. ...|+..+. .|+...+....+... ..+++|||+.|.++.... .++. ++ ..
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~-~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~ 268 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQL-MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA 268 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCcc-ceEECCCCCEEEEEECCCCCcceeEEEeecccCC
Confidence 45667763 235543 345787774 444443333223334 678899997533333211 3444 34 32
Q ss_pred -C-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCC--CCeeEEeecccccc
Q 026118 80 -G-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS--TNQTSLVLDGLYFA 154 (243)
Q Consensus 80 -g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~~~ 154 (243)
+ .+.+.... .......+++|||+ |.++... .....||.++.+ +++.+.+.......
T Consensus 269 ~g~~~~lt~~~----~~~~~~p~wSPDG~~Laf~s~~---------------~g~~~ly~~~~~~~g~~~~~lt~~~~~~ 329 (428)
T PRK01029 269 IGKPRRLLNEA----FGTQGNPSFSPDGTRLVFVSNK---------------DGRPRIYIMQIDPEGQSPRLLTKKYRNS 329 (428)
T ss_pred CCcceEeecCC----CCCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECcccccceEEeccCCCCc
Confidence 2 23332211 11123458899997 5554221 112368887764 23445554333344
Q ss_pred ceEEEcCCCCEEEEEEcC--CCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118 155 NGVALSEDERFLVVCESW--KFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS 210 (243)
Q Consensus 155 ~gi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~ 210 (243)
....++|||+.|+++... ...|+.++++++.. +.+... ........++++|+
T Consensus 330 ~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~---~~Lt~~-~~~~~~p~wSpDG~ 383 (428)
T PRK01029 330 SCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD---YQLTTS-PENKESPSWAIDSL 383 (428)
T ss_pred cceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe---EEccCC-CCCccceEECCCCC
Confidence 568999999988776543 34688888876422 222211 22234466667776
No 70
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.20 E-value=0.00021 Score=59.26 Aligned_cols=182 Identities=14% Similarity=0.110 Sum_probs=107.6
Q ss_pred cccEEEcCCCc-EEEEeCCCcEEEEccCCce----eEecccCCccccceEEccCCC-EEEEEeCCCcEEEEe-cCC-cEE
Q 026118 12 PEDVSVDGNGV-LYTATGDGWIKRMHPNGTW----EDWHQVGSQSLLGLTTTKENN-VIIVCDSQQGLLKVS-EEG-VTV 83 (243)
Q Consensus 12 p~~i~~d~~g~-l~~~~~~~~i~~~~~~g~~----~~~~~~~~~~~~~i~~~~~g~-l~~v~~~~~gl~~~~-~~g-~~~ 83 (243)
-.+|-+-+.-. |.++..++.+..+.-+|+. ..... ...|.....|.++|. .++++....=+|.|| .+. +..
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k 294 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK 294 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee-ccCccceeeecCCCceEEEecccceEEEEeecccccccc
Confidence 34566666554 5566566655444434433 32222 134543677889998 535554444578888 555 444
Q ss_pred EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCC
Q 026118 84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE 163 (243)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg 163 (243)
+.. +.+..........+++++++.+.. ...|.|+.+...++++..-..-.....+++|+.|+
T Consensus 295 ~~~-~~g~e~~~~e~FeVShd~~fia~~-----------------G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSds 356 (514)
T KOG2055|consen 295 LKP-PYGVEEKSMERFEVSHDSNFIAIA-----------------GNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDS 356 (514)
T ss_pred ccC-CCCcccchhheeEecCCCCeEEEc-----------------ccCceEEeehhhhhhhhheeeeccEEeeEEEecCC
Confidence 432 222223355567889999855442 13467888888877765444334566789999999
Q ss_pred CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118 164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII 216 (243)
Q Consensus 164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~ 216 (243)
+.||++. ..+.|+.+++... .-...|.+...-.-..+|.+.+|. |+++.
T Consensus 357 k~l~~~~-~~GeV~v~nl~~~--~~~~rf~D~G~v~gts~~~S~ng~-ylA~G 405 (514)
T KOG2055|consen 357 KELLASG-GTGEVYVWNLRQN--SCLHRFVDDGSVHGTSLCISLNGS-YLATG 405 (514)
T ss_pred cEEEEEc-CCceEEEEecCCc--ceEEEEeecCccceeeeeecCCCc-eEEec
Confidence 9888875 4579999998754 222333322111223488888887 55443
No 71
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.0012 Score=52.17 Aligned_cols=148 Identities=10% Similarity=0.063 Sum_probs=86.4
Q ss_pred ccEEEcCCCcEEEEe-CCCcEEEEccC-CceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-c---CC-cEEEE
Q 026118 13 EDVSVDGNGVLYTAT-GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-E---EG-VTVLV 85 (243)
Q Consensus 13 ~~i~~d~~g~l~~~~-~~~~i~~~~~~-g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~---~g-~~~~~ 85 (243)
.+|...|-+..+++. .+..|+.||.. .+-...... ..+. -.|+||+|-++.++.....|-.+| + .| +..+.
T Consensus 104 ~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-~~~p-i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~ 181 (311)
T KOG1446|consen 104 NSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-SGRP-IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFS 181 (311)
T ss_pred EEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-CCCc-ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEc
Confidence 345666655666554 56667777621 111111111 1223 578999998834444334566666 3 35 44443
Q ss_pred eccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec----cccccceEEEc
Q 026118 86 SQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD----GLYFANGVALS 160 (243)
Q Consensus 86 ~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~----~~~~~~gi~~~ 160 (243)
... .....-..|.+++||. +.+++.. +.++.+|.=.|.+..-.. ....|-+..++
T Consensus 182 i~~--~~~~ew~~l~FS~dGK~iLlsT~~------------------s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 182 ITD--NDEAEWTDLEFSPDGKSILLSTNA------------------SFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred cCC--CCccceeeeEEcCCCCEEEEEeCC------------------CcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence 221 2234456889999997 5556433 467888877776543221 22345578899
Q ss_pred CCCCEEEEEEcCCCeEEEEEeec
Q 026118 161 EDERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 161 ~dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
||++.+..+ ..+++|..|+...
T Consensus 242 Pds~Fvl~g-s~dg~i~vw~~~t 263 (311)
T KOG1446|consen 242 PDSKFVLSG-SDDGTIHVWNLET 263 (311)
T ss_pred CCCcEEEEe-cCCCcEEEEEcCC
Confidence 999955544 6778999999864
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.19 E-value=6.4e-05 Score=57.71 Aligned_cols=129 Identities=12% Similarity=0.075 Sum_probs=78.8
Q ss_pred EEEeCCCcEEEEe-cCC--cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCC
Q 026118 65 IVCDSQQGLLKVS-EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST 141 (243)
Q Consensus 65 ~v~~~~~gl~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~ 141 (243)
..+.....|..+| .+| +..+.. ...+.++.+.++|++.....+ +.|-..|+++
T Consensus 159 LSSadd~tVRLWD~rTgt~v~sL~~------~s~VtSlEvs~dG~ilTia~g------------------ssV~Fwdaks 214 (334)
T KOG0278|consen 159 LSSADDKTVRLWDHRTGTEVQSLEF------NSPVTSLEVSQDGRILTIAYG------------------SSVKFWDAKS 214 (334)
T ss_pred EeeccCCceEEEEeccCcEEEEEec------CCCCcceeeccCCCEEEEecC------------------ceeEEecccc
Confidence 3334445677777 777 222321 245678899999997776322 4677788875
Q ss_pred CeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCCc
Q 026118 142 NQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDP 220 (243)
Q Consensus 142 ~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~ 220 (243)
-.+....+-.....+..++|+.. .||+.-.+..+++||.+.+. ....+..+..+-...+.+.++|.+|.+..+.+.
T Consensus 215 f~~lKs~k~P~nV~SASL~P~k~-~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 215 FGLLKSYKMPCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred ccceeeccCccccccccccCCCc-eEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCce
Confidence 44333222223345566778886 99998888899999998541 111222233333456777888888887766553
No 73
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=98.19 E-value=0.00038 Score=55.66 Aligned_cols=192 Identities=15% Similarity=0.132 Sum_probs=108.7
Q ss_pred ccCCcccEEEcCCCcEEEEeCCCcEEEE---c---c----CCceeEe-------cccCCccccceEEccCCCEEEEEeCC
Q 026118 8 IVNHPEDVSVDGNGVLYTATGDGWIKRM---H---P----NGTWEDW-------HQVGSQSLLGLTTTKENNVIIVCDSQ 70 (243)
Q Consensus 8 ~~~~p~~i~~d~~g~l~~~~~~~~i~~~---~---~----~g~~~~~-------~~~~~~~~~~i~~~~~g~l~~v~~~~ 70 (243)
.+..|=++++.+ ..||+++. ..|.++ + + .+..... ....-+.. .|++ .++.+ |+.+..
T Consensus 47 ~F~r~MGl~~~~-~~l~~~t~-~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiH-dia~-~~~~l-~fVNT~ 121 (335)
T TIGR03032 47 TFPRPMGLAVSP-QSLTLGTR-YQLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAH-DLAL-GAGRL-LFVNTL 121 (335)
T ss_pred ccCccceeeeeC-CeEEEEEc-ceeEEcccccccccccccCCCCCeEEeeeeeeeccCcchh-heee-cCCcE-EEEECc
Confidence 356677777755 36888763 246666 2 1 1111111 11112233 5777 56677 666654
Q ss_pred C-cEEEEecCC-cEEEEe-----ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe
Q 026118 71 Q-GLLKVSEEG-VTVLVS-----QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ 143 (243)
Q Consensus 71 ~-gl~~~~~~g-~~~~~~-----~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~ 143 (243)
- =|..+++.- +.+.-. ......-=+.|||+.....-.|++.-+..--+..| -..+..|++. +|-.+++
T Consensus 122 fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gW----R~~~~~gG~v-idv~s~e 196 (335)
T TIGR03032 122 FSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGW----REGRRDGGCV-IDIPSGE 196 (335)
T ss_pred ceeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCcccc----cccccCCeEE-EEeCCCC
Confidence 3 356666433 333221 11111112567888754334776642210001112 1223445554 6776554
Q ss_pred eEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEecCC
Q 026118 144 TSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIKMD 219 (243)
Q Consensus 144 ~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~ 219 (243)
.+..++..|.+.-+. +|+ ||++++.++.|.++|.+. +..+.+. ..+++|.||++. |+ ++|+...-+
T Consensus 197 --vl~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~~---G~~e~Va-~vpG~~rGL~f~--G~llvVgmSk~R 263 (335)
T TIGR03032 197 --VVASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQA---GKFQPVA-FLPGFTRGLAFA--GDFAFVGLSKLR 263 (335)
T ss_pred --EEEcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCCC---CcEEEEE-ECCCCCccccee--CCEEEEEecccc
Confidence 467888889888886 677 999999999999999764 3344544 467899999998 77 566665544
No 74
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.13 E-value=0.0018 Score=55.14 Aligned_cols=156 Identities=12% Similarity=0.077 Sum_probs=87.5
Q ss_pred cEEEEccCCc-eeEecccCCccccceEEccCCCEEEEEeCC---CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCC
Q 026118 31 WIKRMHPNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASD 104 (243)
Q Consensus 31 ~i~~~~~~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~---~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 104 (243)
.|+..+.++. .+.+... ..+.....+++||+.++++... ..|+.++ .++ .+.+.. .. .....++++||
T Consensus 171 ~l~~~d~~g~~~~~l~~~-~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~----~~~~~~~~spD 244 (417)
T TIGR02800 171 ELQVADYDGANPQTITRS-REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FP----GMNGAPAFSPD 244 (417)
T ss_pred eEEEEcCCCCCCEEeecC-CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CC----CCccceEECCC
Confidence 4666664433 3333222 2222267788999865554433 2488888 666 443332 11 12335688999
Q ss_pred Cc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC--CCeEEEEEe
Q 026118 105 GS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW--KFRCVKHFL 181 (243)
Q Consensus 105 G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~ 181 (243)
|+ ++++... .....||.++.+++..+.+...........+++||++|+++... ...|+.++.
T Consensus 245 g~~l~~~~~~---------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 245 GSKLAVSLSK---------------DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred CCEEEEEECC---------------CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 86 5555322 12246999999887776665433333457889999988766432 246888887
Q ss_pred ecCCCcceEEeccCCCCCCCceEECCCCCE
Q 026118 182 KVSGRTDREIFIDNLPGGPDNVNLARDGSF 211 (243)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l 211 (243)
.+.. .+.+. .........+++++|+.
T Consensus 310 ~~~~---~~~l~-~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 310 DGGE---VRRLT-FRGGYNASPSWSPDGDL 335 (417)
T ss_pred CCCC---EEEee-cCCCCccCeEECCCCCE
Confidence 6532 22221 11223345667777763
No 75
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.13 E-value=0.00072 Score=57.07 Aligned_cols=153 Identities=14% Similarity=0.084 Sum_probs=94.7
Q ss_pred CCcccEEEcCCCcEEEEeCCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cC-CcEEEEec
Q 026118 10 NHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EE-GVTVLVSQ 87 (243)
Q Consensus 10 ~~p~~i~~d~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~-g~~~~~~~ 87 (243)
..|.++++.++|.+-+......|..+...+....... .-.+. ++++++++..+.|+..+..|..+. .. ........
T Consensus 406 ~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~-~y~~s-~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~ 483 (603)
T KOG0318|consen 406 SQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPI-GYESS-AVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL 483 (603)
T ss_pred CCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecc-ccccc-eEEEcCCCCEEEEecccceEEEEEecCCcccceeee
Confidence 4699999998875443333344666653333333322 23455 899999999855555444555555 22 22221111
Q ss_pred cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe--eccccccceEEEcCCCCE
Q 026118 88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV--LDGLYFANGVALSEDERF 165 (243)
Q Consensus 88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~--~~~~~~~~gi~~~~dg~~ 165 (243)
... ...+..++++|||.++.+.. ....+..|+..+.+.... .-.....+.++++|+.+
T Consensus 484 ~~h--~a~iT~vaySpd~~yla~~D-----------------a~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~- 543 (603)
T KOG0318|consen 484 LEH--RAAITDVAYSPDGAYLAAGD-----------------ASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNK- 543 (603)
T ss_pred ecc--cCCceEEEECCCCcEEEEec-----------------cCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCce-
Confidence 111 13456889999999877632 235788888887665322 11235678999999998
Q ss_pred EEEEEcCCCeEEEEEeecC
Q 026118 166 LVVCESWKFRCVKHFLKVS 184 (243)
Q Consensus 166 l~v~~~~~~~i~~~~~~~~ 184 (243)
++.+...+..|+.|+.+.+
T Consensus 544 ~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 544 LVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred EEEeccccceEEEEEccCh
Confidence 7777677788999998764
No 76
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.11 E-value=0.0022 Score=54.64 Aligned_cols=132 Identities=15% Similarity=0.084 Sum_probs=79.9
Q ss_pred cEEEEccCCceeE-ecccCCccccceEEccCCC-EEEEEeCC---CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcC
Q 026118 31 WIKRMHPNGTWED-WHQVGSQSLLGLTTTKENN-VIIVCDSQ---QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEAS 103 (243)
Q Consensus 31 ~i~~~~~~g~~~~-~~~~~~~~~~~i~~~~~g~-l~~v~~~~---~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~ 103 (243)
.|+..|.+|.-.. +.. .+ +.....++|||+ ++++.... ..|+.++ .+| .+.+.. ..+ ......++|
T Consensus 170 ~l~~~d~dg~~~~~~~~-~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g----~~~~~~~SP 242 (419)
T PRK04043 170 NIVLADYTLTYQKVIVK-GG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG----MLVVSDVSK 242 (419)
T ss_pred eEEEECCCCCceeEEcc-CC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC----cEEeeEECC
Confidence 4556565554332 222 22 332567889997 34654433 3488999 677 555543 211 111236789
Q ss_pred CCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC--CCeEEEEE
Q 026118 104 DGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW--KFRCVKHF 180 (243)
Q Consensus 104 ~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~ 180 (243)
||+ +.++.+. .....||.++.++++.+++...........|+|||+.|+++... ...|++++
T Consensus 243 DG~~la~~~~~---------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~d 307 (419)
T PRK04043 243 DGSKLLLTMAP---------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKK 307 (419)
T ss_pred CCCEEEEEEcc---------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEE
Confidence 985 6555322 12357999999888888775443333456899999988887543 24789988
Q ss_pred eecC
Q 026118 181 LKVS 184 (243)
Q Consensus 181 ~~~~ 184 (243)
.+++
T Consensus 308 l~~g 311 (419)
T PRK04043 308 LNSG 311 (419)
T ss_pred CCCC
Confidence 8764
No 77
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.11 E-value=0.0015 Score=55.87 Aligned_cols=133 Identities=15% Similarity=0.105 Sum_probs=76.8
Q ss_pred cEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCC---cEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCC
Q 026118 31 WIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDG 105 (243)
Q Consensus 31 ~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~---gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G 105 (243)
.|+..|.+|.-.........+...+.++|||+.+..+.... .|+.++ .++ .+.+.. ..+ ....++++|||
T Consensus 185 ~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~g----~~~~~~wSPDG 259 (429)
T PRK01742 185 EVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FRG----HNGAPAFSPDG 259 (429)
T ss_pred EEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CCC----ccCceeECCCC
Confidence 45566654432222111122333788999998644443322 488888 666 444432 221 12256899999
Q ss_pred c-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCC--CeEEEEEee
Q 026118 106 S-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK--FRCVKHFLK 182 (243)
Q Consensus 106 ~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~--~~i~~~~~~ 182 (243)
+ |.++.+. ...-.||.+|.++++.+++...........|+|||+.|+++.... ..|+.++..
T Consensus 260 ~~La~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 260 SRLAFASSK---------------DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred CEEEEEEec---------------CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence 7 4444221 112358999998888777665444556789999999887765433 356666554
Q ss_pred c
Q 026118 183 V 183 (243)
Q Consensus 183 ~ 183 (243)
+
T Consensus 325 ~ 325 (429)
T PRK01742 325 G 325 (429)
T ss_pred C
Confidence 3
No 78
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.09 E-value=0.0018 Score=54.80 Aligned_cols=187 Identities=16% Similarity=0.169 Sum_probs=114.3
Q ss_pred ccccCCcccEEEcCCC-cEEEEeCCCcEEEEc-cCCceeEec-ccCCccccceEEccCCCEEEEEeCCCcEEEEe-c-CC
Q 026118 6 EGIVNHPEDVSVDGNG-VLYTATGDGWIKRMH-PNGTWEDWH-QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-E-EG 80 (243)
Q Consensus 6 ~g~~~~p~~i~~d~~g-~l~~~~~~~~i~~~~-~~g~~~~~~-~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~-~g 80 (243)
.|....-.++++.+++ .||.++.+|.|..++ ..|.-.++. ....+...+|+.+..+.+ +.+.++.-|.+++ . ++
T Consensus 317 ~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~-~t~g~Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 317 SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGEL-FTIGWDDTLRVISLKDNG 395 (603)
T ss_pred cccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcE-EEEecCCeEEEEecccCc
Confidence 3434455567788777 688888999999998 344333221 111222227888777888 8888877787777 3 33
Q ss_pred c-EEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEE
Q 026118 81 V-TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVA 158 (243)
Q Consensus 81 ~-~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~ 158 (243)
. ....... ...|-++++.++|. +.++.. ..|..+...++ ...+ .-...+..+|
T Consensus 396 ~t~~~~~~l----g~QP~~lav~~d~~~avv~~~-------------------~~iv~l~~~~~-~~~~-~~~y~~s~vA 450 (603)
T KOG0318|consen 396 YTKSEVVKL----GSQPKGLAVLSDGGTAVVACI-------------------SDIVLLQDQTK-VSSI-PIGYESSAVA 450 (603)
T ss_pred ccccceeec----CCCceeEEEcCCCCEEEEEec-------------------CcEEEEecCCc-ceee-ccccccceEE
Confidence 2 2211111 13466899998875 444422 24555553322 2222 2235677899
Q ss_pred EcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCCc
Q 026118 159 LSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDP 220 (243)
Q Consensus 159 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~ 220 (243)
++|+++.+.|... ++.|+.|.+.++.+....... ...+-+..++.++||...+++...+.
T Consensus 451 v~~~~~~vaVGG~-Dgkvhvysl~g~~l~ee~~~~-~h~a~iT~vaySpd~~yla~~Da~rk 510 (603)
T KOG0318|consen 451 VSPDGSEVAVGGQ-DGKVHVYSLSGDELKEEAKLL-EHRAAITDVAYSPDGAYLAAGDASRK 510 (603)
T ss_pred EcCCCCEEEEecc-cceEEEEEecCCcccceeeee-cccCCceEEEECCCCcEEEEeccCCc
Confidence 9999997777754 567999999886543322221 23345677899999987777665553
No 79
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.06 E-value=0.0013 Score=51.66 Aligned_cols=148 Identities=22% Similarity=0.244 Sum_probs=87.6
Q ss_pred CcccEEEcCCCcEEEEe-CCCcEEEEccC-C-ceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEecCC---cEEE
Q 026118 11 HPEDVSVDGNGVLYTAT-GDGWIKRMHPN-G-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG---VTVL 84 (243)
Q Consensus 11 ~p~~i~~d~~g~l~~~~-~~~~i~~~~~~-g-~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g---~~~~ 84 (243)
..|+|++-. +.||.-+ ..+..+.+|++ - ....+.. .+.-. ||+.|.+ .+ |+++....|+.+|+.. .+.+
T Consensus 91 FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGW-GLt~dg~-~L-i~SDGS~~L~~~dP~~f~~~~~i 165 (264)
T PF05096_consen 91 FGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGW-GLTSDGK-RL-IMSDGSSRLYFLDPETFKEVRTI 165 (264)
T ss_dssp -EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEEEE--SSS---EEEECSS-CE-EEE-SSSEEEEE-TTT-SEEEEE
T ss_pred cceeEEEEC-CEEEEEEecCCeEEEEccccceEEEEEec-CCcce-EEEcCCC-EE-EEECCccceEEECCcccceEEEE
Confidence 345666654 4678665 56777888853 2 2333322 24456 8885532 45 9999888899999543 3333
Q ss_pred EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-----------c---
Q 026118 85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-----------G--- 150 (243)
Q Consensus 85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-----------~--- 150 (243)
.....+.+....|.|.+- +|.+|.=.. .+..|+++||++|++..... .
T Consensus 166 ~V~~~g~pv~~LNELE~i-~G~IyANVW-----------------~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~ 227 (264)
T PF05096_consen 166 QVTDNGRPVSNLNELEYI-NGKIYANVW-----------------QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQ 227 (264)
T ss_dssp E-EETTEE---EEEEEEE-TTEEEEEET-----------------TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST-
T ss_pred EEEECCEECCCcEeEEEE-cCEEEEEeC-----------------CCCeEEEEeCCCCeEEEEEEhhHhhhccccccccc
Confidence 333455556677777654 788887531 24589999999998876421 0
Q ss_pred --ccccceEEEcCCCCEEEEEEcCCCeEEEEEe
Q 026118 151 --LYFANGVALSEDERFLVVCESWKFRCVKHFL 181 (243)
Q Consensus 151 --~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~ 181 (243)
...-||||++++.+.+||+.-.=..++.+.+
T Consensus 228 ~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 228 PDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp -TTS-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred ccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence 1245899999999999999653356766654
No 80
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.03 E-value=0.0037 Score=49.25 Aligned_cols=173 Identities=14% Similarity=0.114 Sum_probs=105.9
Q ss_pred ccEEEcCCCcEEEEeCCCcEEEEc-cCCc-eeEecccCCccccceEEcc-CCCEEEEEeCCC-cEEEEe-cCC-cEEEEe
Q 026118 13 EDVSVDGNGVLYTATGDGWIKRMH-PNGT-WEDWHQVGSQSLLGLTTTK-ENNVIIVCDSQQ-GLLKVS-EEG-VTVLVS 86 (243)
Q Consensus 13 ~~i~~d~~g~l~~~~~~~~i~~~~-~~g~-~~~~~~~~~~~~~~i~~~~-~g~l~~v~~~~~-gl~~~~-~~g-~~~~~~ 86 (243)
.+..+-+|+.|..+..+.....+| +.|+ ...|.-..+... +|.+.| +++. ||...-. -...+| +.+ ..+...
T Consensus 149 ScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~-slsl~p~~~nt-FvSg~cD~~aklWD~R~~~c~qtF~ 226 (343)
T KOG0286|consen 149 SCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM-SLSLSPSDGNT-FVSGGCDKSAKLWDVRSGQCVQTFE 226 (343)
T ss_pred EEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEE-EEecCCCCCCe-EEecccccceeeeeccCcceeEeec
Confidence 344454577788887777888888 5554 445554445556 788888 8898 7765433 345566 666 333222
Q ss_pred ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--ccccceEEEcCCCC
Q 026118 87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGVALSEDER 164 (243)
Q Consensus 87 ~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~~gi~~~~dg~ 164 (243)
+. ..-++.|.+-|+|.-+.+-+.. ..-++|-+..+ .++..+... ....++++|+.-|+
T Consensus 227 ---gh-esDINsv~ffP~G~afatGSDD---------------~tcRlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGR 286 (343)
T KOG0286|consen 227 ---GH-ESDINSVRFFPSGDAFATGSDD---------------ATCRLYDLRAD-QELAVYSHDSIICGITSVAFSKSGR 286 (343)
T ss_pred ---cc-ccccceEEEccCCCeeeecCCC---------------ceeEEEeecCC-cEEeeeccCcccCCceeEEEccccc
Confidence 11 2457888999999999885431 12244444443 455554332 34468899999999
Q ss_pred EEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCE
Q 026118 165 FLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSF 211 (243)
Q Consensus 165 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l 211 (243)
.||.. ..+..+.++|.-.. .....+. +-.++...+.+.+||..
T Consensus 287 lLfag-y~d~~c~vWDtlk~--e~vg~L~-GHeNRvScl~~s~DG~a 329 (343)
T KOG0286|consen 287 LLFAG-YDDFTCNVWDTLKG--ERVGVLA-GHENRVSCLGVSPDGMA 329 (343)
T ss_pred EEEee-ecCCceeEeecccc--ceEEEee-ccCCeeEEEEECCCCcE
Confidence 66655 56678888885432 1112222 33446777888888853
No 81
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.01 E-value=0.00012 Score=59.80 Aligned_cols=138 Identities=18% Similarity=0.266 Sum_probs=87.8
Q ss_pred ccCCcccEEEcCCC-cEEEEeCCCcEEEEccCCceeEeccc--CCc----cccceEEccCCCEEEEEeCCC---------
Q 026118 8 IVNHPEDVSVDGNG-VLYTATGDGWIKRMHPNGTWEDWHQV--GSQ----SLLGLTTTKENNVIIVCDSQQ--------- 71 (243)
Q Consensus 8 ~~~~p~~i~~d~~g-~l~~~~~~~~i~~~~~~g~~~~~~~~--~~~----~~~~i~~~~~g~l~~v~~~~~--------- 71 (243)
.+.+|-+|+++..| .||+++.--+++.+++.|........ .+. .+ ++.++++|.+ |+++...
T Consensus 113 ~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N-~ldI~~~g~v-yFTDSSsk~~~rd~~~ 190 (376)
T KOG1520|consen 113 LCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLN-DLDIDPEGVV-YFTDSSSKYDRRDFVF 190 (376)
T ss_pred ccCCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecC-ceeEcCCCeE-EEeccccccchhheEE
Confidence 36899999999765 99999966779999976544322111 121 24 7788888887 8876432
Q ss_pred ---------cEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEE-EeCCCCCCcccccccccccCCCceEEEEeC
Q 026118 72 ---------GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYF-TVSSTKFTPAEYYLDLVSGEPHGVLLKYDP 139 (243)
Q Consensus 72 ---------gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v-~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~ 139 (243)
+++++| .+. .+++. ....++||++.++|+...+ +... ..++.+|-.
T Consensus 191 a~l~g~~~GRl~~YD~~tK~~~VLl-----d~L~F~NGlaLS~d~sfvl~~Et~-----------------~~ri~rywi 248 (376)
T KOG1520|consen 191 AALEGDPTGRLFRYDPSTKVTKVLL-----DGLYFPNGLALSPDGSFVLVAETT-----------------TARIKRYWI 248 (376)
T ss_pred eeecCCCccceEEecCcccchhhhh-----hcccccccccCCCCCCEEEEEeec-----------------cceeeeeEe
Confidence 244554 222 22222 2356899999999987544 4221 235666655
Q ss_pred CC---CeeEEeecc-ccccceEEEcCCCCEEEEEE
Q 026118 140 ST---NQTSLVLDG-LYFANGVALSEDERFLVVCE 170 (243)
Q Consensus 140 ~~---~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~ 170 (243)
++ |+.+.++.+ ...|.-|..+++|+ .||+-
T Consensus 249 ~g~k~gt~EvFa~~LPG~PDNIR~~~~G~-fWVal 282 (376)
T KOG1520|consen 249 KGPKAGTSEVFAEGLPGYPDNIRRDSTGH-FWVAL 282 (376)
T ss_pred cCCccCchhhHhhcCCCCCcceeECCCCC-EEEEE
Confidence 43 333556654 35688899999998 88874
No 82
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.01 E-value=0.0016 Score=56.30 Aligned_cols=151 Identities=14% Similarity=0.161 Sum_probs=96.2
Q ss_pred cCCcccEEEcCCCcEEEE-eCCCcEEEEcc-CC-c-eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--c
Q 026118 9 VNHPEDVSVDGNGVLYTA-TGDGWIKRMHP-NG-T-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--V 81 (243)
Q Consensus 9 ~~~p~~i~~d~~g~l~~~-~~~~~i~~~~~-~g-~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~ 81 (243)
...-..+++.++|...++ ..+..|..++. .. . ++.+.-...... +++|+++|+++..+..+.-+..++ .++ .
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~-~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~ 281 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVT-SVAFSPDGNLLVSGSDDGTVRIWDVRTGECV 281 (456)
T ss_pred ccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceE-EEEecCCCCEEEEecCCCcEEEEeccCCeEE
Confidence 344567888899964444 47788888883 33 3 344432223334 899999998845555444466666 565 3
Q ss_pred EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE--Eeecccc---ccce
Q 026118 82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS--LVLDGLY---FANG 156 (243)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~--~~~~~~~---~~~g 156 (243)
+.+... ...+.++++.++|+++++.+ ..+.|..+|..++... ....... ....
T Consensus 282 ~~l~~h-----s~~is~~~f~~d~~~l~s~s-----------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 339 (456)
T KOG0266|consen 282 RKLKGH-----SDGISGLAFSPDGNLLVSAS-----------------YDGTIRVWDLETGSKLCLKLLSGAENSAPVTS 339 (456)
T ss_pred Eeeecc-----CCceEEEEECCCCCEEEEcC-----------------CCccEEEEECCCCceeeeecccCCCCCCceeE
Confidence 333221 23566789999999887742 2467888999988732 2222222 2377
Q ss_pred EEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118 157 VALSEDERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 157 i~~~~dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
+.|+|+++++++.. .++.+..+++..
T Consensus 340 ~~fsp~~~~ll~~~-~d~~~~~w~l~~ 365 (456)
T KOG0266|consen 340 VQFSPNGKYLLSAS-LDRTLKLWDLRS 365 (456)
T ss_pred EEECCCCcEEEEec-CCCeEEEEEccC
Confidence 89999999888774 456777777764
No 83
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.00 E-value=0.0031 Score=49.64 Aligned_cols=175 Identities=10% Similarity=0.097 Sum_probs=99.5
Q ss_pred cccEEEcCCCcEEEEeC---CCcEEEEc-cCCceeEecccCCc--cccceEEccCCCEEEEEeCCCc-EEEEecCCcEEE
Q 026118 12 PEDVSVDGNGVLYTATG---DGWIKRMH-PNGTWEDWHQVGSQ--SLLGLTTTKENNVIIVCDSQQG-LLKVSEEGVTVL 84 (243)
Q Consensus 12 p~~i~~d~~g~l~~~~~---~~~i~~~~-~~g~~~~~~~~~~~--~~~~i~~~~~g~l~~v~~~~~g-l~~~~~~g~~~~ 84 (243)
-+++.++.+|.||-++. ...|.+++ .+|++......... .. ||++-. +++ |.-++..+ .+.+|.+-.+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgE-Git~~~-d~l-~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGE-GITILG-DKL-YQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EE-EEEEET-TEE-EEEESSSSEEEEEETTTTEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccce-eEEEEC-CEE-EEEEecCCeEEEEccccceEE
Confidence 45678888899998882 34688888 56765543222111 23 666643 356 99998876 456675443433
Q ss_pred Ee-ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee---c---cccccceE
Q 026118 85 VS-QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL---D---GLYFANGV 157 (243)
Q Consensus 85 ~~-~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~---~---~~~~~~gi 157 (243)
.. ... ..-.||+.| +..+|.+|. +..|+.+||++-+..... . .....|-|
T Consensus 124 ~~~~y~----~EGWGLt~d-g~~Li~SDG------------------S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNEL 180 (264)
T PF05096_consen 124 GTFPYP----GEGWGLTSD-GKRLIMSDG------------------SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNEL 180 (264)
T ss_dssp EEEE-S----SS--EEEEC-SSCEEEE-S------------------SSEEEEE-TTT-SEEEEEE-EETTEE---EEEE
T ss_pred EEEecC----CcceEEEcC-CCEEEEECC------------------ccceEEECCcccceEEEEEEEECCEECCCcEeE
Confidence 32 122 234578754 346888863 358999999876544321 1 12334667
Q ss_pred EEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEec---c-----C----CCCCCCceEECCCC-CEEEE
Q 026118 158 ALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFI---D-----N----LPGGPDNVNLARDG-SFWIS 214 (243)
Q Consensus 158 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~---~-----~----~~~~~~~i~~d~~G-~lwv~ 214 (243)
.+- +|. +|.--..++.|.++|+..+.....--+. + . ...-.+|||.|+++ ++||.
T Consensus 181 E~i-~G~-IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 181 EYI-NGK-IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp EEE-TTE-EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred EEE-cCE-EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 774 665 8887778899999998764322211110 0 0 01235789998765 48884
No 84
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.96 E-value=0.0011 Score=51.11 Aligned_cols=152 Identities=15% Similarity=0.122 Sum_probs=89.2
Q ss_pred cEEEcCCC-cEEEEeCCCcEEEEcc-CCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEec
Q 026118 14 DVSVDGNG-VLYTATGDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVSQ 87 (243)
Q Consensus 14 ~i~~d~~g-~l~~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~~ 87 (243)
+++..++. .|++++.+|.|..+|. +.... ........+..++++.+||.+|..++..+..|.++ .++ ..++...
T Consensus 129 ~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~ 208 (311)
T KOG0315|consen 129 TVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPV 208 (311)
T ss_pred eEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEh
Confidence 45666654 6999999999999993 22211 11122223443889999999855555445677777 433 3333221
Q ss_pred cCCC-cccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCC-eeEEeecc-ccccceEEEcCCCC
Q 026118 88 FNGS-QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-QTSLVLDG-LYFANGVALSEDER 164 (243)
Q Consensus 88 ~~~~-~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~-~~~~~~~~-~~~~~gi~~~~dg~ 164 (243)
..-+ ...++-....+||+++.++.+. ...++.++.++- +++...++ ..+.=+.+||.||+
T Consensus 209 ~k~~ah~~~il~C~lSPd~k~lat~ss-----------------dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~ 271 (311)
T KOG0315|consen 209 HKFQAHNGHILRCLLSPDVKYLATCSS-----------------DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGE 271 (311)
T ss_pred hheecccceEEEEEECCCCcEEEeecC-----------------CceEEEEecCCceeeEEEeecCCceEEeeeeccCcc
Confidence 1111 1234445578999988887543 124444555433 44444433 34455789999999
Q ss_pred EEEEEEcCCCeEEEEEeec
Q 026118 165 FLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 165 ~l~v~~~~~~~i~~~~~~~ 183 (243)
||+.+. .++....+++..
T Consensus 272 YlvTas-sd~~~rlW~~~~ 289 (311)
T KOG0315|consen 272 YLVTAS-SDHTARLWDLSA 289 (311)
T ss_pred EEEecC-CCCceeeccccc
Confidence 888775 446666666653
No 85
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.95 E-value=0.00013 Score=60.70 Aligned_cols=183 Identities=14% Similarity=0.130 Sum_probs=108.1
Q ss_pred cEEEcCCCcE-EEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCC-CEEEEEeCCCcEEEEe-cCC--cEEEEec
Q 026118 14 DVSVDGNGVL-YTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKEN-NVIIVCDSQQGLLKVS-EEG--VTVLVSQ 87 (243)
Q Consensus 14 ~i~~d~~g~l-~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g-~l~~v~~~~~gl~~~~-~~g--~~~~~~~ 87 (243)
.+++..+|+= ..+..+..|..+| .+|+...-......|. .+-+.|++ ++++++...+.|..+| .++ +..+..
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~-cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~- 340 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT-CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR- 340 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCce-eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh-
Confidence 4566666753 3444677777888 5676554322223344 78888888 7745665566799999 776 222221
Q ss_pred cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-cc-ccccceEEEcCCCCE
Q 026118 88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DG-LYFANGVALSEDERF 165 (243)
Q Consensus 88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~-~~~~~gi~~~~dg~~ 165 (243)
....++.+.+-++|+-+++++.. ..+...+-.......+. .. ....-.+..+|.++
T Consensus 341 ----hLg~i~~i~F~~~g~rFissSDd-----------------ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~- 398 (503)
T KOG0282|consen 341 ----HLGAILDITFVDEGRRFISSSDD-----------------KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK- 398 (503)
T ss_pred ----hhhheeeeEEccCCceEeeeccC-----------------ccEEEEEcCCCccchhhcchhhccCcceecCCCCC-
Confidence 23456778888999999986541 23333333323322221 11 11223588899998
Q ss_pred EEEEEcCCCeEEEEEeecC-CCcceEEecc-CCCCCCCceEECCCCCEEEEEecCCc
Q 026118 166 LVVCESWKFRCVKHFLKVS-GRTDREIFID-NLPGGPDNVNLARDGSFWISIIKMDP 220 (243)
Q Consensus 166 l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~-~~~~~~~~i~~d~~G~lwv~~~~~~~ 220 (243)
.+++....+.|+.|..... .+...+.|.. ...|++-.+.+++||+..++....+.
T Consensus 399 ~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~ 455 (503)
T KOG0282|consen 399 WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK 455 (503)
T ss_pred eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc
Confidence 6667677788988876532 3333333321 24566777888888887666655443
No 86
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.95 E-value=0.0041 Score=48.67 Aligned_cols=182 Identities=12% Similarity=0.109 Sum_probs=110.6
Q ss_pred CcccEEEcCCCcEEEE-eCCCcEEEEcc-CCc-eeEecccCCccccceEEccCCCEEEEEeCCC-cEEEEe-cCCcEE-E
Q 026118 11 HPEDVSVDGNGVLYTA-TGDGWIKRMHP-NGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS-EEGVTV-L 84 (243)
Q Consensus 11 ~p~~i~~d~~g~l~~~-~~~~~i~~~~~-~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~-~~g~~~-~ 84 (243)
.-..++..+||...++ ..++.++.+|. .|+ ...+.-...... ++++++|.+. .+..... -+..++ ..+.+. +
T Consensus 65 ~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl-sva~s~dn~q-ivSGSrDkTiklwnt~g~ck~t~ 142 (315)
T KOG0279|consen 65 FVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL-SVAFSTDNRQ-IVSGSRDKTIKLWNTLGVCKYTI 142 (315)
T ss_pred EecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE-EEEecCCCce-eecCCCcceeeeeeecccEEEEE
Confidence 3456777788876554 48888899984 443 233333233455 8999999887 4544333 455666 333222 2
Q ss_pred EeccCCCcccCCccEEEcCCC-c-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe-eccccccceEEEcC
Q 026118 85 VSQFNGSQLRFANDVIEASDG-S-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYFANGVALSE 161 (243)
Q Consensus 85 ~~~~~~~~~~~~~~l~~d~~G-~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~~~~~gi~~~~ 161 (243)
.. ......+.++.+.|.- + +++..+ ....|-..|.++.+++.. .......+.++++|
T Consensus 143 ~~---~~~~~WVscvrfsP~~~~p~Ivs~s-----------------~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp 202 (315)
T KOG0279|consen 143 HE---DSHREWVSCVRFSPNESNPIIVSAS-----------------WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP 202 (315)
T ss_pred ec---CCCcCcEEEEEEcCCCCCcEEEEcc-----------------CCceEEEEccCCcchhhccccccccEEEEEECC
Confidence 21 1113567899999964 4 444422 223455667776666543 33445678899999
Q ss_pred CCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCCc
Q 026118 162 DERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDP 220 (243)
Q Consensus 162 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~ 220 (243)
||. +..+...++.++.+|++.. .+.+.+. ...-...+++.++ +.|++..-+.+
T Consensus 203 DGs-lcasGgkdg~~~LwdL~~~--k~lysl~--a~~~v~sl~fspn-rywL~~at~~s 255 (315)
T KOG0279|consen 203 DGS-LCASGGKDGEAMLWDLNEG--KNLYSLE--AFDIVNSLCFSPN-RYWLCAATATS 255 (315)
T ss_pred CCC-EEecCCCCceEEEEEccCC--ceeEecc--CCCeEeeEEecCC-ceeEeeccCCc
Confidence 999 8887777788999998743 2222221 1123456888876 67877655543
No 87
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.95 E-value=0.0006 Score=57.05 Aligned_cols=131 Identities=13% Similarity=0.160 Sum_probs=84.0
Q ss_pred EEEEeCCC-cEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCCcc
Q 026118 23 LYTATGDG-WIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFAND 98 (243)
Q Consensus 23 l~~~~~~~-~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~ 98 (243)
+.+++.+| .+-.++. .+.++++....++.. .+..+++|+.+.+++...-++.++ .+| ++.+..... ..+.+
T Consensus 374 ~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~----~lItd 448 (668)
T COG4946 374 DVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEY----GLITD 448 (668)
T ss_pred eEEeccCCceEEEEecCCceEEEeeCCccceE-EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccccc----ceeEE
Confidence 34444333 5666663 455677766666667 889999999757777666789999 888 666543322 23456
Q ss_pred EEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEc
Q 026118 99 VIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES 171 (243)
Q Consensus 99 l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~ 171 (243)
+++.++++ |++ |+ ..++.....|-.+|.++++.-.+.+....-.+.+|+||+++||....
T Consensus 449 f~~~~nsr-~iA-----Ya-------fP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 449 FDWHPNSR-WIA-----YA-------FPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred EEEcCCce-eEE-----Ee-------cCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 67777765 444 11 11122233566788887776666555555566799999999998743
No 88
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.0031 Score=54.50 Aligned_cols=186 Identities=16% Similarity=0.154 Sum_probs=105.5
Q ss_pred cEEEcCCCcEEEEe-CCCcEEEEcc-CCc--eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC---cEEEE
Q 026118 14 DVSVDGNGVLYTAT-GDGWIKRMHP-NGT--WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG---VTVLV 85 (243)
Q Consensus 14 ~i~~d~~g~l~~~~-~~~~i~~~~~-~g~--~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g---~~~~~ 85 (243)
++.+.++|...++. .++.+..++. .++ ...-..........+++.++|+++.-+..+..+..++ ... .+.+.
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~ 243 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK 243 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec
Confidence 35566888765444 5555555553 222 1111111112222789999998733333333455555 333 23322
Q ss_pred eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccceEEEcCCCC
Q 026118 86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDER 164 (243)
Q Consensus 86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~ 164 (243)
+ ....+.++++.++|++.++.+. .+.|...|..+++...... ......+++|+++++
T Consensus 244 ----g-H~~~v~~~~f~p~g~~i~Sgs~-----------------D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~ 301 (456)
T KOG0266|consen 244 ----G-HSTYVTSVAFSPDGNLLVSGSD-----------------DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN 301 (456)
T ss_pred ----C-CCCceEEEEecCCCCEEEEecC-----------------CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCC
Confidence 1 1246689999999988887433 3467777777776665543 344667899999999
Q ss_pred EEEEEEcCCCeEEEEEeecCCCcceEEeccCCCC-CCCceEECCCCC-EEEEEecCCchh
Q 026118 165 FLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPG-GPDNVNLARDGS-FWISIIKMDPKG 222 (243)
Q Consensus 165 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~d~~G~-lwv~~~~~~~~~ 222 (243)
.|+.+ ..++.|..||...+...-...+...... -...+.++++|. ++++...+....
T Consensus 302 ~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~ 360 (456)
T KOG0266|consen 302 LLVSA-SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKL 360 (456)
T ss_pred EEEEc-CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEE
Confidence 66655 6688999999876432101122111111 125577788887 455443333333
No 89
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.93 E-value=0.0019 Score=49.91 Aligned_cols=139 Identities=11% Similarity=0.061 Sum_probs=87.0
Q ss_pred CCcEEEEeCCCcEEEEc-cCCce-eEecccCCccccceEEccCCCEEEEEeCCCcEEEEecCCcEEEEeccCCCcccCCc
Q 026118 20 NGVLYTATGDGWIKRMH-PNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFAN 97 (243)
Q Consensus 20 ~g~l~~~~~~~~i~~~~-~~g~~-~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g~~~~~~~~~~~~~~~~~ 97 (243)
|..+..+..++.|+.+| ..|+. ..+.. ..+..++-++.+|++ .....+.+|..+++..+..+.. ...+ -.+.
T Consensus 155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~--~s~VtSlEvs~dG~i-lTia~gssV~Fwdaksf~~lKs-~k~P--~nV~ 228 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTGTEVQSLEF--NSPVTSLEVSQDGRI-LTIAYGSSVKFWDAKSFGLLKS-YKMP--CNVE 228 (334)
T ss_pred CceEEeeccCCceEEEEeccCcEEEEEec--CCCCcceeeccCCCE-EEEecCceeEEeccccccceee-ccCc--cccc
Confidence 44555555778888888 45553 33332 344448999999998 4444456677777443332221 1111 1222
Q ss_pred cEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccc-cccceEEEcCCCCEEEEEEcCCCe
Q 026118 98 DVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGL-YFANGVALSEDERFLVVCESWKFR 175 (243)
Q Consensus 98 ~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~-~~~~gi~~~~dg~~l~v~~~~~~~ 175 (243)
+.-..|+..+||+.. ....+|+||-.+++-+-.. .+. .-...+.|+|||. +|.+.+.++.
T Consensus 229 SASL~P~k~~fVaGg-----------------ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGT 290 (334)
T KOG0278|consen 229 SASLHPKKEFFVAGG-----------------EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGT 290 (334)
T ss_pred cccccCCCceEEecC-----------------cceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCce
Confidence 334567778999832 3457999999988654432 222 3346799999999 9999888888
Q ss_pred EEEEEee
Q 026118 176 CVKHFLK 182 (243)
Q Consensus 176 i~~~~~~ 182 (243)
|..+...
T Consensus 291 irlWQt~ 297 (334)
T KOG0278|consen 291 IRLWQTT 297 (334)
T ss_pred EEEEEec
Confidence 8777654
No 90
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.92 E-value=0.0053 Score=47.81 Aligned_cols=172 Identities=19% Similarity=0.186 Sum_probs=91.0
Q ss_pred EEcCCCcEEEEeCCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEE-Eecc-CC
Q 026118 16 SVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVL-VSQF-NG 90 (243)
Q Consensus 16 ~~d~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~-~~~~-~~ 90 (243)
++..++.+|+++.++.|+.+|. +|+...-... ..+......-.++.+ |++...+.++.+| .+| .... .... +.
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~v-~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGGRV-YVGTSDGSLYALDAKTGKVLWSIYLTSSPP 109 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETTEE-EEEETTSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeeccccc-ccccceeeeEecccCCcceeeeeccccccc
Confidence 4446789999998899999994 7875433222 222212223344556 8887666799999 888 4332 1211 11
Q ss_pred CcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecccc--c----------cceEE
Q 026118 91 SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLY--F----------ANGVA 158 (243)
Q Consensus 91 ~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~--~----------~~gi~ 158 (243)
..........++ .+.++++.. .+.|+.+|+++|+......... . ...+.
T Consensus 110 ~~~~~~~~~~~~-~~~~~~~~~------------------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 170 (238)
T PF13360_consen 110 AGVRSSSSPAVD-GDRLYVGTS------------------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPV 170 (238)
T ss_dssp CSTB--SEEEEE-TTEEEEEET------------------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEE
T ss_pred cccccccCceEe-cCEEEEEec------------------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceE
Confidence 111122223333 455777642 3689999999998754322111 0 12233
Q ss_pred EcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118 159 LSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII 216 (243)
Q Consensus 159 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~ 216 (243)
++ ++ .+|++... +.+..++...+. ..+... ...+..+....++.||+.+.
T Consensus 171 ~~-~~-~v~~~~~~-g~~~~~d~~tg~----~~w~~~-~~~~~~~~~~~~~~l~~~~~ 220 (238)
T PF13360_consen 171 IS-DG-RVYVSSGD-GRVVAVDLATGE----KLWSKP-ISGIYSLPSVDGGTLYVTSS 220 (238)
T ss_dssp CC-TT-EEEEECCT-SSEEEEETTTTE----EEEEEC-SS-ECECEECCCTEEEEEET
T ss_pred EE-CC-EEEEEcCC-CeEEEEECCCCC----EEEEec-CCCccCCceeeCCEEEEEeC
Confidence 33 44 58888643 446666655432 123111 22223323345566777773
No 91
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.90 E-value=0.0041 Score=52.51 Aligned_cols=180 Identities=15% Similarity=0.065 Sum_probs=101.2
Q ss_pred cCCcccEEEcCCCcEEEEeCCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCC-cEEEEecCCcEEEEec
Q 026118 9 VNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEGVTVLVSQ 87 (243)
Q Consensus 9 ~~~p~~i~~d~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~~~g~~~~~~~ 87 (243)
+..++.|+.... .||+++..+.|..=+....+.......+.-+++++..++.++ +++-... .+..++...... ...
T Consensus 329 ~G~iRtv~e~~~-di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q-~~T~gqdk~v~lW~~~k~~w-t~~ 405 (626)
T KOG2106|consen 329 FGPIRTVAEGKG-DILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQ-LLTCGQDKHVRLWNDHKLEW-TKI 405 (626)
T ss_pred cCCeeEEecCCC-cEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhh-eeeccCcceEEEccCCceeE-EEE
Confidence 345566666543 399998766666555333332222222334449999998888 5544334 454554322111 111
Q ss_pred cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEE
Q 026118 88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLV 167 (243)
Q Consensus 88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~ 167 (243)
+. ....++.++|.|.+.+++ ..|..+.+|.++..+..+..+....+-+.++|+|.+|-
T Consensus 406 ~~----d~~~~~~fhpsg~va~Gt------------------~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lA 463 (626)
T KOG2106|consen 406 IE----DPAECADFHPSGVVAVGT------------------ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLA 463 (626)
T ss_pred ec----CceeEeeccCcceEEEee------------------ccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEE
Confidence 11 123466788989766664 34677888988766555555544456789999999777
Q ss_pred EEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEE
Q 026118 168 VCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISI 215 (243)
Q Consensus 168 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~ 215 (243)
++ +.++.|+.|..+.+... .............-+..+.|++..++.
T Consensus 464 vg-s~d~~iyiy~Vs~~g~~-y~r~~k~~gs~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 464 VG-SHDNHIYIYRVSANGRK-YSRVGKCSGSPITHLDWSSDSQFLVSN 509 (626)
T ss_pred Ee-cCCCeEEEEEECCCCcE-EEEeeeecCceeEEeeecCCCceEEec
Confidence 77 46788999888743211 111110001122335556666665543
No 92
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.89 E-value=0.0041 Score=54.18 Aligned_cols=197 Identities=11% Similarity=0.065 Sum_probs=101.1
Q ss_pred cEEEcC-CCcEEEEeCCC------------------cEEEEc-cCCceeEecccCCc------cccc-eEE---ccCCC-
Q 026118 14 DVSVDG-NGVLYTATGDG------------------WIKRMH-PNGTWEDWHQVGSQ------SLLG-LTT---TKENN- 62 (243)
Q Consensus 14 ~i~~d~-~g~l~~~~~~~------------------~i~~~~-~~g~~~~~~~~~~~------~~~~-i~~---~~~g~- 62 (243)
+.++|. ++.+|+++.++ .|+.+| .+|+..-....... ..+. +.. +.+|.
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 367774 67899997543 699999 56765533211110 0001 111 12343
Q ss_pred --EEEEEeCCCcEEEEe-cCCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeC
Q 026118 63 --VIIVCDSQQGLLKVS-EEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDP 139 (243)
Q Consensus 63 --l~~v~~~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~ 139 (243)
+++++.....++.+| .+|......... ..+++.++ +.+|+.......+..............+.|+.+|.
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~ 373 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP 373 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEee------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence 447776556699999 788222221111 11234454 67777532100000000000001124578999999
Q ss_pred CCCeeEEeeccc----------cc-cceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCC
Q 026118 140 STNQTSLVLDGL----------YF-ANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARD 208 (243)
Q Consensus 140 ~~~~~~~~~~~~----------~~-~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~ 208 (243)
.+|+........ .. ...++. .++.+|+.+ .++.|+.+|.+++..-....+.......| +....+
T Consensus 374 ~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~-~dG~l~ald~~tG~~lW~~~~~~~~~a~P--~~~~~~ 448 (488)
T cd00216 374 KTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGA-ADGYFRAFDATTGKELWKFRTPSGIQATP--MTYEVN 448 (488)
T ss_pred CCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEEC-CCCeEEEEECCCCceeeEEECCCCceEcC--EEEEeC
Confidence 998765432211 01 112333 345588875 57899999987653322222211111123 555668
Q ss_pred CCEEEEEecCCchh
Q 026118 209 GSFWISIIKMDPKG 222 (243)
Q Consensus 209 G~lwv~~~~~~~~~ 222 (243)
|++||++..++.+.
T Consensus 449 g~~yv~~~~g~~~~ 462 (488)
T cd00216 449 GKQYVGVMVGGGGS 462 (488)
T ss_pred CEEEEEEEecCCcc
Confidence 99999999886543
No 93
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.89 E-value=0.001 Score=58.45 Aligned_cols=185 Identities=12% Similarity=-0.001 Sum_probs=106.1
Q ss_pred EEEcCCCcEEEEe-CCCcEEEEcc-CC-ceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe---cCC-cEEEEec
Q 026118 15 VSVDGNGVLYTAT-GDGWIKRMHP-NG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS---EEG-VTVLVSQ 87 (243)
Q Consensus 15 i~~d~~g~l~~~~-~~~~i~~~~~-~g-~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~---~~g-~~~~~~~ 87 (243)
..+.|+.+..++. .+..++.++. .. ....+ .....|.+.+.|.|.|.+ |++....+..++. ... .+.+.
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~GyY-Fatas~D~tArLWs~d~~~PlRifa-- 532 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPRGYY-FATASHDQTARLWSTDHNKPLRIFA-- 532 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCCceE-EEecCCCceeeeeecccCCchhhhc--
Confidence 5556666555444 6666666662 22 22222 234557767889999877 5554444544443 222 22222
Q ss_pred cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-eeccccccceEEEcCCCCEE
Q 026118 88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VLDGLYFANGVALSEDERFL 166 (243)
Q Consensus 88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-~~~~~~~~~gi~~~~dg~~l 166 (243)
...+-+.++.+.|..++..+.+. ...-++| |-.+|...+ +.........++++|+|++|
T Consensus 533 ---ghlsDV~cv~FHPNs~Y~aTGSs---------------D~tVRlW--Dv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L 592 (707)
T KOG0263|consen 533 ---GHLSDVDCVSFHPNSNYVATGSS---------------DRTVRLW--DVSTGNSVRIFTGHKGPVTALAFSPCGRYL 592 (707)
T ss_pred ---ccccccceEEECCcccccccCCC---------------CceEEEE--EcCCCcEEEEecCCCCceEEEEEcCCCceE
Confidence 12345667889998876666432 1222444 444444444 44434455789999999966
Q ss_pred EEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCCc-hhhhhhh
Q 026118 167 VVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDP-KGIQALQ 227 (243)
Q Consensus 167 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~-~~~~~~~ 227 (243)
--+ ...+.|..||+..+.+-. .+. +..+....|.++.+|++.++...+.+ ..+++..
T Consensus 593 aSg-~ed~~I~iWDl~~~~~v~--~l~-~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 593 ASG-DEDGLIKIWDLANGSLVK--QLK-GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred eec-ccCCcEEEEEcCCCcchh--hhh-cccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 655 456889999987542211 111 12445677999999998887766554 3344333
No 94
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.83 E-value=0.0029 Score=55.32 Aligned_cols=123 Identities=17% Similarity=0.239 Sum_probs=69.8
Q ss_pred cccCCccEEEcC-CCcEEEEeCCCCCC-ccccc-ccccccCCCceEEEEeCCCC-------eeEEeecc-----------
Q 026118 92 QLRFANDVIEAS-DGSLYFTVSSTKFT-PAEYY-LDLVSGEPHGVLLKYDPSTN-------QTSLVLDG----------- 150 (243)
Q Consensus 92 ~~~~~~~l~~d~-~G~l~v~~~~~~~~-~~~~~-~~~~~~~~~g~v~~~~~~~~-------~~~~~~~~----------- 150 (243)
.+..+.++.+++ +|.+|++.+...-. ..... .........|.|++++++.. +++.+...
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 456788999998 58999986542210 00000 11112345678999998865 44433211
Q ss_pred -------ccccceEEEcCCCCEEEEEEcCCCeE------------EEEEe--------ecCCCcceEEeccC-CCCCCCc
Q 026118 151 -------LYFANGVALSEDERFLVVCESWKFRC------------VKHFL--------KVSGRTDREIFIDN-LPGGPDN 202 (243)
Q Consensus 151 -------~~~~~gi~~~~dg~~l~v~~~~~~~i------------~~~~~--------~~~~~~~~~~~~~~-~~~~~~~ 202 (243)
...|..|+|+++|+ |||++.....- +.+.. .+...+..+.|... ...-..|
T Consensus 428 ~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG 506 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITG 506 (524)
T ss_pred CcccCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCccccc
Confidence 34678899999999 99997654321 11211 11122233333221 2224667
Q ss_pred eEECCCCC-EEEEE
Q 026118 203 VNLARDGS-FWISI 215 (243)
Q Consensus 203 i~~d~~G~-lwv~~ 215 (243)
+++++||+ |||..
T Consensus 507 ~~fspDg~tlFvni 520 (524)
T PF05787_consen 507 PCFSPDGRTLFVNI 520 (524)
T ss_pred ceECCCCCEEEEEE
Confidence 99999998 77743
No 95
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.82 E-value=0.00071 Score=54.14 Aligned_cols=137 Identities=20% Similarity=0.231 Sum_probs=78.0
Q ss_pred CcccEEEcCCCcEEEEe-CCCcEEEEccCCceeE-ec--------ccCCccccceEEccCCCEEEEEeCCC----cEEEE
Q 026118 11 HPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWED-WH--------QVGSQSLLGLTTTKENNVIIVCDSQQ----GLLKV 76 (243)
Q Consensus 11 ~p~~i~~d~~g~l~~~~-~~~~i~~~~~~g~~~~-~~--------~~~~~~~~~i~~~~~g~l~~v~~~~~----gl~~~ 76 (243)
..+.|++ .++.+|+.+ .-.-+..++++..+.. |. ....-..+||++ .+|+-.||+..+. +-++-
T Consensus 104 diHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~-~~g~p~yVTa~~~sD~~~gWR~ 181 (335)
T TIGR03032 104 DAHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMAL-DDGEPRYVTALSQSDVADGWRE 181 (335)
T ss_pred chhheee-cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceee-eCCeEEEEEEeeccCCcccccc
Confidence 3455666 455666554 3345666665544332 11 111223448888 4566557765321 22232
Q ss_pred e-cCC-c-EEEEec-cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecccc
Q 026118 77 S-EEG-V-TVLVSQ-FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLY 152 (243)
Q Consensus 77 ~-~~g-~-~~~~~~-~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~ 152 (243)
+ .+| + ..+... .-......|.+... .+|++|+.|+. .+.|+++|+++|+.+.+..-..
T Consensus 182 ~~~~gG~vidv~s~evl~~GLsmPhSPRW-hdgrLwvldsg-----------------tGev~~vD~~~G~~e~Va~vpG 243 (335)
T TIGR03032 182 GRRDGGCVIDIPSGEVVASGLSMPHSPRW-YQGKLWLLNSG-----------------RGELGYVDPQAGKFQPVAFLPG 243 (335)
T ss_pred cccCCeEEEEeCCCCEEEcCccCCcCCcE-eCCeEEEEECC-----------------CCEEEEEcCCCCcEEEEEECCC
Confidence 2 222 1 111110 00011234444333 37999999875 4689999999999999887778
Q ss_pred ccceEEEcCCCCEEEEE
Q 026118 153 FANGVALSEDERFLVVC 169 (243)
Q Consensus 153 ~~~gi~~~~dg~~l~v~ 169 (243)
.+.||.|. |++++|+
T Consensus 244 ~~rGL~f~--G~llvVg 258 (335)
T TIGR03032 244 FTRGLAFA--GDFAFVG 258 (335)
T ss_pred CCccccee--CCEEEEE
Confidence 99999998 8877776
No 96
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.76 E-value=0.004 Score=49.34 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=92.0
Q ss_pred ccCCcccEEEcCCCcEEEEe-CCCcEEEEc--cCCceeEecc-----cC----Cc-cccceEEccCCCEEEEEeCCC--c
Q 026118 8 IVNHPEDVSVDGNGVLYTAT-GDGWIKRMH--PNGTWEDWHQ-----VG----SQ-SLLGLTTTKENNVIIVCDSQQ--G 72 (243)
Q Consensus 8 ~~~~p~~i~~d~~g~l~~~~-~~~~i~~~~--~~g~~~~~~~-----~~----~~-~~~~i~~~~~g~l~~v~~~~~--g 72 (243)
.+..||+|.+-.+|..-+++ .+..++.+. ++..+..... .. +. -. |++.|+.++.||++-..+ +
T Consensus 127 g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfE-GlA~d~~~~~l~~aKEr~P~~ 205 (316)
T COG3204 127 GFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFE-GLAWDPVDHRLFVAKERNPIG 205 (316)
T ss_pred ccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCce-eeecCCCCceEEEEEccCCcE
Confidence 37899999998888766766 566676554 4544333221 10 11 13 799998877768887553 6
Q ss_pred EEEEe--cCC-cEEEEeccCCC---cccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE
Q 026118 73 LLKVS--EEG-VTVLVSQFNGS---QLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS 145 (243)
Q Consensus 73 l~~~~--~~g-~~~~~~~~~~~---~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~ 145 (243)
|+.++ ++. ..+....+... ...-+.++.+++ .++++|-.. .+..|..+|.++.-..
T Consensus 206 I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~-----------------ESr~l~Evd~~G~~~~ 268 (316)
T COG3204 206 IFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSD-----------------ESRRLLEVDLSGEVIE 268 (316)
T ss_pred EEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEec-----------------CCceEEEEecCCCeee
Confidence 77776 223 22222211111 123455677776 456665321 2346778888733222
Q ss_pred Ee---------eccccccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118 146 LV---------LDGLYFANGVALSEDERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 146 ~~---------~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 182 (243)
.+ ..+.+.+.|++.+++|. ||+... .+..+++.++
T Consensus 269 ~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSE-Pnlfy~F~~~ 312 (316)
T COG3204 269 LLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSE-PNLFYRFTPQ 312 (316)
T ss_pred eEEeccCCCCCcccCCCcceeEECCCCC-EEEEec-CCcceecccC
Confidence 22 12346678999999998 999864 4667777654
No 97
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.76 E-value=0.00037 Score=59.67 Aligned_cols=74 Identities=19% Similarity=0.149 Sum_probs=47.9
Q ss_pred ccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc--cccceEEEcCCCCEEEEEE
Q 026118 93 LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--YFANGVALSEDERFLVVCE 170 (243)
Q Consensus 93 ~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~--~~~~gi~~~~dg~~l~v~~ 170 (243)
+..|..|++|+.|+||+.+....-.... . ...-..+..=++++++++++.... ....|++|+||+++|||.-
T Consensus 499 f~~PDnl~fD~~GrLWi~TDg~~s~~~~----~--~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~v 572 (616)
T COG3211 499 FNSPDNLAFDPWGRLWIQTDGSGSTLRN----R--FRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNV 572 (616)
T ss_pred ccCCCceEECCCCCEEEEecCCCCccCc----c--cccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEe
Confidence 5678899999999999987541100000 0 000112334567777887775443 3467999999999999986
Q ss_pred cC
Q 026118 171 SW 172 (243)
Q Consensus 171 ~~ 172 (243)
+.
T Consensus 573 QH 574 (616)
T COG3211 573 QH 574 (616)
T ss_pred cC
Confidence 53
No 98
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.74 E-value=0.003 Score=52.81 Aligned_cols=154 Identities=18% Similarity=0.192 Sum_probs=85.1
Q ss_pred cCCcccEEEcCCCcEEEEeCC--------------CcEEEEccCC---------ceeEecccCCccccceEEccC-CCEE
Q 026118 9 VNHPEDVSVDGNGVLYTATGD--------------GWIKRMHPNG---------TWEDWHQVGSQSLLGLTTTKE-NNVI 64 (243)
Q Consensus 9 ~~~p~~i~~d~~g~l~~~~~~--------------~~i~~~~~~g---------~~~~~~~~~~~~~~~i~~~~~-g~l~ 64 (243)
...-..|++++||.||++..+ |++.+++..+ ....|.....+|. |++++|. |.|
T Consensus 176 ~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~q-Gl~w~P~tg~L- 253 (399)
T COG2133 176 HHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQ-GLAWHPVTGAL- 253 (399)
T ss_pred CcCcccEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCcc-ceeecCCCCcE-
Confidence 445567999999999988621 3455554222 2233444457889 9999987 778
Q ss_pred EEEeCCC-cEE---EEe--cCC--c----EEEEecc-------------------CCCcccCCccEEEcC-C------Cc
Q 026118 65 IVCDSQQ-GLL---KVS--EEG--V----TVLVSQF-------------------NGSQLRFANDVIEAS-D------GS 106 (243)
Q Consensus 65 ~v~~~~~-gl~---~~~--~~g--~----~~~~~~~-------------------~~~~~~~~~~l~~d~-~------G~ 106 (243)
|++..+. .+. .++ +.| . ..+.... .-.++..+.+|++.. + |.
T Consensus 254 w~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~ 333 (399)
T COG2133 254 WTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGD 333 (399)
T ss_pred EEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCc
Confidence 9987643 221 001 111 0 0000000 001122334555542 1 45
Q ss_pred EEEEeCCCCCCcccccccccccCCCceEEEEeCCCC---eeEEeec--cccccceEEEcCCCCEEEEEEcC-CCeEEEEE
Q 026118 107 LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN---QTSLVLD--GLYFANGVALSEDERFLVVCESW-KFRCVKHF 180 (243)
Q Consensus 107 l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~---~~~~~~~--~~~~~~gi~~~~dg~~l~v~~~~-~~~i~~~~ 180 (243)
++++... +-.+.+.+++++ ..+.+.. ....+.++++.+||- ||+++.. ++.|+|+.
T Consensus 334 lfV~~hg-----------------sw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGa-llv~~D~~~g~i~Rv~ 395 (399)
T COG2133 334 LFVGAHG-----------------SWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGA-LLVLTDQGDGRILRVS 395 (399)
T ss_pred EEEEeec-----------------ceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCe-EEEeecCCCCeEEEec
Confidence 6665321 124677777744 1222221 235789999999998 7777665 66999876
Q ss_pred ee
Q 026118 181 LK 182 (243)
Q Consensus 181 ~~ 182 (243)
..
T Consensus 396 ~~ 397 (399)
T COG2133 396 YA 397 (399)
T ss_pred CC
Confidence 43
No 99
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.74 E-value=0.01 Score=49.26 Aligned_cols=143 Identities=14% Similarity=0.116 Sum_probs=82.4
Q ss_pred cccceEEccCCCEEEEEeCCCcEEEEe--cCCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCccccccccccc
Q 026118 51 SLLGLTTTKENNVIIVCDSQQGLLKVS--EEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSG 128 (243)
Q Consensus 51 ~~~~i~~~~~g~l~~v~~~~~gl~~~~--~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~ 128 (243)
|..++...+.|.+ ++.....+-+.|. .+|........... .....+.++.|||.|+.+-
T Consensus 305 ~V~~ls~h~tgeY-llsAs~d~~w~Fsd~~~g~~lt~vs~~~s-~v~~ts~~fHpDgLifgtg----------------- 365 (506)
T KOG0289|consen 305 PVTGLSLHPTGEY-LLSASNDGTWAFSDISSGSQLTVVSDETS-DVEYTSAAFHPDGLIFGTG----------------- 365 (506)
T ss_pred cceeeeeccCCcE-EEEecCCceEEEEEccCCcEEEEEeeccc-cceeEEeeEcCCceEEecc-----------------
Confidence 4448888899998 5554456766665 56621111111111 1234466899999888762
Q ss_pred CCCceEEEEeCCCCe-eEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECC
Q 026118 129 EPHGVLLKYDPSTNQ-TSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLAR 207 (243)
Q Consensus 129 ~~~g~v~~~~~~~~~-~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~ 207 (243)
...+.|-.+|...+. ...+.....-...|.|+.+|-||.++ ..+..|..||+... .+++.+..........+.+|.
T Consensus 366 t~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~-add~~V~lwDLRKl--~n~kt~~l~~~~~v~s~~fD~ 442 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATA-ADDGSVKLWDLRKL--KNFKTIQLDEKKEVNSLSFDQ 442 (506)
T ss_pred CCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEE-ecCCeEEEEEehhh--cccceeeccccccceeEEEcC
Confidence 234556567776543 22333333445679999888766665 45566999998642 233333211111245688888
Q ss_pred CCCEEEEE
Q 026118 208 DGSFWISI 215 (243)
Q Consensus 208 ~G~lwv~~ 215 (243)
.|...+..
T Consensus 443 SGt~L~~~ 450 (506)
T KOG0289|consen 443 SGTYLGIA 450 (506)
T ss_pred CCCeEEee
Confidence 88754443
No 100
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.73 E-value=0.00096 Score=58.23 Aligned_cols=79 Identities=20% Similarity=0.232 Sum_probs=49.3
Q ss_pred cccCCccEEEcCCCcEEEEeCCCCCCcc-----ccc--ccccccCCCceEEEEeCCCCeeEEeecc--ccccceEEEcCC
Q 026118 92 QLRFANDVIEASDGSLYFTVSSTKFTPA-----EYY--LDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGVALSED 162 (243)
Q Consensus 92 ~~~~~~~l~~d~~G~l~v~~~~~~~~~~-----~~~--~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~~gi~~~~d 162 (243)
.+..|..|+++++|+||+++........ ... ..+....... ++..++.+++++++... .....|++|+||
T Consensus 434 ~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~-~~~~~~~~g~~~rf~~~P~gaE~tG~~fspD 512 (524)
T PF05787_consen 434 GFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNN-VWAYDPDTGELKRFLVGPNGAEITGPCFSPD 512 (524)
T ss_pred CcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccce-eeeccccccceeeeccCCCCcccccceECCC
Confidence 3568889999999999999765322110 000 0000000111 55567777888887643 244689999999
Q ss_pred CCEEEEEEc
Q 026118 163 ERFLVVCES 171 (243)
Q Consensus 163 g~~l~v~~~ 171 (243)
+++||+.-+
T Consensus 513 g~tlFvniQ 521 (524)
T PF05787_consen 513 GRTLFVNIQ 521 (524)
T ss_pred CCEEEEEEe
Confidence 999998643
No 101
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.70 E-value=0.0032 Score=51.90 Aligned_cols=195 Identities=13% Similarity=0.117 Sum_probs=109.9
Q ss_pred ccEEEcCCCcEE-EEeCCC--cEEEEccCCceeEeccc--CCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118 13 EDVSVDGNGVLY-TATGDG--WIKRMHPNGTWEDWHQV--GSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLV 85 (243)
Q Consensus 13 ~~i~~d~~g~l~-~~~~~~--~i~~~~~~g~~~~~~~~--~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~ 85 (243)
..+.+.++|.-. .++.+. .|+.+..+..++-...- ...|+..|+.+||.+.|..+....-+..+| .+| ..+..
T Consensus 228 Wfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y 307 (519)
T KOG0293|consen 228 WFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY 307 (519)
T ss_pred EEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc
Confidence 345555555422 222222 23444455554332221 134554688999999867776656677888 677 44332
Q ss_pred eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc--cccceEEEcCCC
Q 026118 86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--YFANGVALSEDE 163 (243)
Q Consensus 86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~--~~~~gi~~~~dg 163 (243)
.... -..+.+.+.-|||.-+++.+ ....++..+.+ |+...-+.+. +....+++++||
T Consensus 308 ~~~~---~~S~~sc~W~pDg~~~V~Gs-----------------~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dg 366 (519)
T KOG0293|consen 308 PSGL---GFSVSSCAWCPDGFRFVTGS-----------------PDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDG 366 (519)
T ss_pred ccCc---CCCcceeEEccCCceeEecC-----------------CCCcEEEecCC-cchhhcccccccceeEEEEEcCCC
Confidence 2111 13455778889998888743 34578899998 4433333332 345689999999
Q ss_pred CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChHHH
Q 026118 164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQALQSCKERK 233 (243)
Q Consensus 164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~ 233 (243)
++++... .+..|..|+.... .. ...... .-....+.++.+|.+.+......+-.+..+.++..++
T Consensus 367 k~vl~v~-~d~~i~l~~~e~~--~d-r~lise-~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~ 431 (519)
T KOG0293|consen 367 KYVLLVT-VDKKIRLYNREAR--VD-RGLISE-EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVR 431 (519)
T ss_pred cEEEEEe-cccceeeechhhh--hh-hccccc-cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHH
Confidence 9998875 4567777776531 11 111111 1123457888888877766655443333344443333
No 102
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.70 E-value=0.0022 Score=54.25 Aligned_cols=196 Identities=12% Similarity=0.071 Sum_probs=106.5
Q ss_pred cccEEEcCCC-cEEEEeCCCcEEEEccC---CceeEecc---cCCccccceEEccCCCEEEEEeCCCcEEEEecCCcEEE
Q 026118 12 PEDVSVDGNG-VLYTATGDGWIKRMHPN---GTWEDWHQ---VGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVL 84 (243)
Q Consensus 12 p~~i~~d~~g-~l~~~~~~~~i~~~~~~---g~~~~~~~---~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g~~~~ 84 (243)
-.++++|+.| +++.|..+..|..+|-. .....|.. -..++..++.+++.|+.+.+.......-.+|.+|+...
T Consensus 170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~ 249 (641)
T KOG0772|consen 170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIV 249 (641)
T ss_pred EEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceee
Confidence 3468899988 78888888889888833 33333321 12334437889988887455543334455567773322
Q ss_pred --Eec--------cCCCcccCCccEEEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec----
Q 026118 85 --VSQ--------FNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD---- 149 (243)
Q Consensus 85 --~~~--------~~~~~~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~---- 149 (243)
... ........+.+-++.|+. ..|++.+. ...-+||-++....+++.+.+
T Consensus 250 e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~---------------DgtlRiWdv~~~k~q~qVik~k~~~ 314 (641)
T KOG0772|consen 250 EFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY---------------DGTLRIWDVNNTKSQLQVIKTKPAG 314 (641)
T ss_pred eeeccchhhhhhhccCCceeeeeccccccCcccceEEecC---------------CCcEEEEecCCchhheeEEeeccCC
Confidence 110 001111223344555643 35555432 122356665544333433321
Q ss_pred c-ccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEe---ccCCCCCCCceEECCCCCEEEEEecCC-chhhh
Q 026118 150 G-LYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIF---IDNLPGGPDNVNLARDGSFWISIIKMD-PKGIQ 224 (243)
Q Consensus 150 ~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~d~~G~lwv~~~~~~-~~~~~ 224 (243)
+ .-.+...+|++||+ ++.+...+++|-.++.-. ...+.... +.........|+++.+|+...+-.... .+.++
T Consensus 315 g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~-~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGS-RTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred CcccCceeeecCCCcc-hhhhcccCCceeeeecCC-cccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence 1 12357789999999 666667888998888622 11111111 111112356799999999777654433 34444
No 103
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.67 E-value=0.0054 Score=48.44 Aligned_cols=165 Identities=15% Similarity=0.169 Sum_probs=79.8
Q ss_pred cCCceeEecccCCccccceEEccCCC-EEEEEeCCCc--EEEEecCC-cEE-EEeccCCCcccCCccEEEcCCCcEEEEe
Q 026118 37 PNGTWEDWHQVGSQSLLGLTTTKENN-VIIVCDSQQG--LLKVSEEG-VTV-LVSQFNGSQLRFANDVIEASDGSLYFTV 111 (243)
Q Consensus 37 ~~g~~~~~~~~~~~~~~~i~~~~~g~-l~~v~~~~~g--l~~~~~~g-~~~-~~~~~~~~~~~~~~~l~~d~~G~l~v~~ 111 (243)
..|+...-...+.+.. +|+++|.-. -+.++- .-| .+.||.++ ..+ ......+ .+=+-.+ ++++||++.+++
T Consensus 56 eaGk~v~~~~lpaR~H-gi~~~p~~~ravafAR-rPGtf~~vfD~~~~~~pv~~~s~~~-RHfyGHG-vfs~dG~~LYAT 131 (366)
T COG3490 56 EAGKIVFATALPARGH-GIAFHPALPRAVAFAR-RPGTFAMVFDPNGAQEPVTLVSQEG-RHFYGHG-VFSPDGRLLYAT 131 (366)
T ss_pred cCCceeeeeecccccC-CeecCCCCcceEEEEe-cCCceEEEECCCCCcCcEEEecccC-ceeeccc-ccCCCCcEEEee
Confidence 3444433222234455 788876433 223433 233 45666443 221 1111111 1112234 588999966665
Q ss_pred CCCCCCcccccccccccCCCceEEEEeCCCCeeEEee---ccccccceEEEcCCCCEEEEEEcC----------------
Q 026118 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL---DGLYFANGVALSEDERFLVVCESW---------------- 172 (243)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~---~~~~~~~gi~~~~dg~~l~v~~~~---------------- 172 (243)
.+. . ....|.|-.||.. ..+.++. ...-.|..+.+.+||++|.+++-+
T Consensus 132 End----------f--d~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNlds 198 (366)
T COG3490 132 END----------F--DPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDS 198 (366)
T ss_pred cCC----------C--CCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhh
Confidence 331 1 1233445556654 4444442 233568889999999988887531
Q ss_pred -CCeEEEEEeecCCCcceEEecc-CCCCCCCceEECCCCCEEEEEecC
Q 026118 173 -KFRCVKHFLKVSGRTDREIFID-NLPGGPDNVNLARDGSFWISIIKM 218 (243)
Q Consensus 173 -~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~G~lwv~~~~~ 218 (243)
..++..++..++.+-++.+++. ...-...-++++++|++|.++.-.
T Consensus 199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~ 246 (366)
T COG3490 199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYR 246 (366)
T ss_pred cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEee
Confidence 0122222311111111112210 011124558999999999998543
No 104
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.65 E-value=0.022 Score=48.08 Aligned_cols=51 Identities=20% Similarity=0.128 Sum_probs=43.7
Q ss_pred eEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecC
Q 026118 133 VLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVS 184 (243)
Q Consensus 133 ~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~ 184 (243)
.|-.||.++++.+++..++.....+.++++|+.+.+++ .+..|+.++++++
T Consensus 383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididng 433 (668)
T COG4946 383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNG 433 (668)
T ss_pred eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCC
Confidence 57788888888888888888888999999999888886 4678999999864
No 105
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.64 E-value=0.0072 Score=53.18 Aligned_cols=198 Identities=12% Similarity=0.072 Sum_probs=106.7
Q ss_pred CcccEEEcCCC-cEEEEeC----CCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cC----
Q 026118 11 HPEDVSVDGNG-VLYTATG----DGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EE---- 79 (243)
Q Consensus 11 ~p~~i~~d~~g-~l~~~~~----~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~---- 79 (243)
+|..+.++++| .+|++.. ...+..++. +....... ++....+..++|+..++. .+.|..+| .+
T Consensus 236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf----ni~~iea~vkdGK~~~V~--gn~V~VID~~t~~~~ 309 (635)
T PRK02888 236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF----NIARIEEAVKAGKFKTIG--GSKVPVVDGRKAANA 309 (635)
T ss_pred CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE----chHHHHHhhhCCCEEEEC--CCEEEEEECCccccC
Confidence 78888999877 5777752 223444442 11111111 111012334678875663 45688999 55
Q ss_pred CcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCee------------EEe
Q 026118 80 GVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT------------SLV 147 (243)
Q Consensus 80 g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~------------~~~ 147 (243)
+...+...+.+ ..|.++.++|||+..+++.. .++.|-.+|.++.+. ..-
T Consensus 310 ~~~v~~yIPVG---KsPHGV~vSPDGkylyVank----------------lS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 310 GSALTRYVPVP---KNPHGVNTSPDGKYFIANGK----------------LSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred CcceEEEEECC---CCccceEECCCCCEEEEeCC----------------CCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 32222222222 46889999999985555432 334566666653221 100
Q ss_pred eccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecC-----CCcceEEecc-CCCCCCCce------EECCCCCEEEEE
Q 026118 148 LDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVS-----GRTDREIFID-NLPGGPDNV------NLARDGSFWISI 215 (243)
Q Consensus 148 ~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~-----~~~~~~~~~~-~~~~~~~~i------~~d~~G~lwv~~ 215 (243)
..-...|--.+|+++|+ .|++-.-+.+|.+++++.. .-....++-. .....|.-+ ..+++|+..++.
T Consensus 371 vevGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 371 PELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSL 449 (635)
T ss_pred eccCCCcceEEECCCCC-EEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEc
Confidence 11134566789999998 9999888899999998641 0000111110 111122223 337899988888
Q ss_pred ecCCchhhhhhhc-ChHHHH
Q 026118 216 IKMDPKGIQALQS-CKERKQ 234 (243)
Q Consensus 216 ~~~~~~~~~~~~~-~~~~~~ 234 (243)
+......+-.+++ -|...|
T Consensus 450 nk~skdrfl~vgpl~pen~q 469 (635)
T PRK02888 450 NKFSKDRFLPVGPLHPENDQ 469 (635)
T ss_pred cccccccccCCCCCCCCcce
Confidence 7765433333333 244444
No 106
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.64 E-value=0.013 Score=49.25 Aligned_cols=137 Identities=15% Similarity=0.150 Sum_probs=76.3
Q ss_pred CCcEEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCC
Q 026118 20 NGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFA 96 (243)
Q Consensus 20 ~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~ 96 (243)
++.+|++..++.|+.+| .+|+...-.........+++.+ ++.+ |++.....++.+| .+| ... .....+.....|
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~~v-~v~~~~g~l~ald~~tG~~~W-~~~~~~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GGLV-FVGTEKGEVIALDAEDGKELW-RAKLSSEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CCEE-EEEcCCCEEEEEECCCCcEee-eeccCceeecCC
Confidence 56899998888999999 5777543222112222144443 4455 8888767799999 678 332 221211111111
Q ss_pred ccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecccc------ccceEEEcCCCCEEEEEE
Q 026118 97 NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLY------FANGVALSEDERFLVVCE 170 (243)
Q Consensus 97 ~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~------~~~gi~~~~dg~~l~v~~ 170 (243)
.+ .++.+++.. ..+.|+.+|+++|+......... .....++. ++ .+|+..
T Consensus 142 ---~v-~~~~v~v~~------------------~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~v~~~~ 197 (377)
T TIGR03300 142 ---LV-ANGLVVVRT------------------NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG-GVLVGF 197 (377)
T ss_pred ---EE-ECCEEEEEC------------------CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC-EEEEEC
Confidence 22 356777763 23579999998887643321111 01122222 33 366653
Q ss_pred cCCCeEEEEEeecC
Q 026118 171 SWKFRCVKHFLKVS 184 (243)
Q Consensus 171 ~~~~~i~~~~~~~~ 184 (243)
.++.++.+|+..+
T Consensus 198 -~~g~v~ald~~tG 210 (377)
T TIGR03300 198 -AGGKLVALDLQTG 210 (377)
T ss_pred -CCCEEEEEEccCC
Confidence 4578888887643
No 107
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.64 E-value=0.0025 Score=53.05 Aligned_cols=187 Identities=11% Similarity=0.080 Sum_probs=104.8
Q ss_pred ccEEEcCCCc-EEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEecc
Q 026118 13 EDVSVDGNGV-LYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQF 88 (243)
Q Consensus 13 ~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~ 88 (243)
+...+.+++. |.+....|-|+.+. .++.+..-....+... ++.|+.|++.+|++...+.|+.+| ... +..... .
T Consensus 307 e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~-~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~-D 384 (514)
T KOG2055|consen 307 ERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS-DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV-D 384 (514)
T ss_pred heeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEe-eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe-e
Confidence 4455666665 33444677788887 4554433223335555 889999999878887666799999 544 332222 1
Q ss_pred CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCC----eeEEeec--c-ccccceEEEcC
Q 026118 89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN----QTSLVLD--G-LYFANGVALSE 161 (243)
Q Consensus 89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~----~~~~~~~--~-~~~~~gi~~~~ 161 (243)
++ ..+-..+|.+.+|.++.+.+ ..|-|-.||.++. ..+++.. . ....+.|+|++
T Consensus 385 ~G--~v~gts~~~S~ng~ylA~GS-----------------~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~ 445 (514)
T KOG2055|consen 385 DG--SVHGTSLCISLNGSYLATGS-----------------DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH 445 (514)
T ss_pred cC--ccceeeeeecCCCceEEecc-----------------CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence 22 12334678888888555432 3456667775532 2222211 1 12356899999
Q ss_pred CCCEEEEEEcCC-CeEEEEEeecCCCcceEEecc--CCCCCCCceEECCCCC-EEEEEecCCchh
Q 026118 162 DERFLVVCESWK-FRCVKHFLKVSGRTDREIFID--NLPGGPDNVNLARDGS-FWISIIKMDPKG 222 (243)
Q Consensus 162 dg~~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~G~-lwv~~~~~~~~~ 222 (243)
|.+.|-++.... +.+....+ +..+.+..|+. ..-+++..|++++.|- |-+|+-.++..+
T Consensus 446 d~qiLAiaS~~~knalrLVHv--PS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l 508 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLVHV--PSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHL 508 (514)
T ss_pred chhhhhhhhhccccceEEEec--cceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceee
Confidence 999676664432 33332222 12222333322 2235788899999654 666665555443
No 108
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=97.62 E-value=0.014 Score=48.75 Aligned_cols=201 Identities=16% Similarity=0.125 Sum_probs=112.5
Q ss_pred cEEEcCCCcEEEEe-CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCc-EEEEe-c-------CC-c
Q 026118 14 DVSVDGNGVLYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVS-E-------EG-V 81 (243)
Q Consensus 14 ~i~~d~~g~l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~g-l~~~~-~-------~g-~ 81 (243)
+++-++.|...++. -.+.||.|. ..|....+....=.+.+.|.|..||.+ +++...+| |+.+. . ++ .
T Consensus 86 al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~-iiTgskDg~V~vW~l~~lv~a~~~~~~ 164 (476)
T KOG0646|consen 86 ALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSH-IITGSKDGAVLVWLLTDLVSADNDHSV 164 (476)
T ss_pred eeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcE-EEecCCCccEEEEEEEeecccccCCCc
Confidence 45566888766555 778899998 677654433211123437889999998 55544444 44443 1 11 2
Q ss_pred EEEEeccCCCcccCCccEEEcCCC---cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEE
Q 026118 82 TVLVSQFNGSQLRFANDVIEASDG---SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVA 158 (243)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~d~~G---~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~ 158 (243)
+++.. +... ...+.++.+++.| ++|-+. ....+..+|...+.+..-..-...++.++
T Consensus 165 ~p~~~-f~~H-tlsITDl~ig~Gg~~~rl~TaS------------------~D~t~k~wdlS~g~LLlti~fp~si~av~ 224 (476)
T KOG0646|consen 165 KPLHI-FSDH-TLSITDLQIGSGGTNARLYTAS------------------EDRTIKLWDLSLGVLLLTITFPSSIKAVA 224 (476)
T ss_pred cceee-eccC-cceeEEEEecCCCccceEEEec------------------CCceEEEEEeccceeeEEEecCCcceeEE
Confidence 22211 1111 1234455555543 333331 22244555666565543333334567899
Q ss_pred EcCCCCEEEEEEcCCCeEEEEEeecCC---C-----------cceEEeccCCCC-CCCceEECCCCCEEEEEecCCchhh
Q 026118 159 LSEDERFLVVCESWKFRCVKHFLKVSG---R-----------TDREIFIDNLPG-GPDNVNLARDGSFWISIIKMDPKGI 223 (243)
Q Consensus 159 ~~~dg~~l~v~~~~~~~i~~~~~~~~~---~-----------~~~~~~~~~~~~-~~~~i~~d~~G~lwv~~~~~~~~~~ 223 (243)
+||.++.+|+.. ..+.|+..++.+-. . .+...+.....+ -...+++.-||++.++....+..+.
T Consensus 225 lDpae~~~yiGt-~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vcv 303 (476)
T KOG0646|consen 225 LDPAERVVYIGT-EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCV 303 (476)
T ss_pred EcccccEEEecC-CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEE
Confidence 999999899885 45788887764311 1 001111111111 2455899999999998887777666
Q ss_pred hhhhcChHHHHHH
Q 026118 224 QALQSCKERKQAV 236 (243)
Q Consensus 224 ~~~~~~~~~~~~~ 236 (243)
..+.+...+|.+.
T Consensus 304 Wdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 304 WDIYSKQCIRTLQ 316 (476)
T ss_pred EecchHHHHHHHh
Confidence 6566666666655
No 109
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.61 E-value=0.011 Score=53.31 Aligned_cols=152 Identities=12% Similarity=0.167 Sum_probs=91.3
Q ss_pred cccEEEcCCCcEEE-EeCCCcEEEEc-cCC-ceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEe
Q 026118 12 PEDVSVDGNGVLYT-ATGDGWIKRMH-PNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVS 86 (243)
Q Consensus 12 p~~i~~d~~g~l~~-~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~ 86 (243)
...++++.+|.+.+ |..+-.|-.++ .+. +.+..... ..|+.++.++|++++|.+....+.|..++ .++ ......
T Consensus 99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~ 177 (933)
T KOG1274|consen 99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT 177 (933)
T ss_pred ceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-CCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence 34678888886554 44666677776 333 33333332 23444899999999977777666677777 666 322211
Q ss_pred ccCC---Cc-ccCCccEEEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-c--cccceEE
Q 026118 87 QFNG---SQ-LRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-L--YFANGVA 158 (243)
Q Consensus 87 ~~~~---~~-~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-~--~~~~gi~ 158 (243)
.... .. .....-+++.|+| ++.+. ...+.|-.|++++.+..-...+ . ....-++
T Consensus 178 ~v~k~n~~~~s~i~~~~aW~Pk~g~la~~------------------~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ 239 (933)
T KOG1274|consen 178 GVDKDNEFILSRICTRLAWHPKGGTLAVP------------------PVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ 239 (933)
T ss_pred cCCccccccccceeeeeeecCCCCeEEee------------------ccCCeEEEEccCCceeheeecccccccceEEEE
Confidence 1111 11 1223346788885 44443 1335677788876654432221 1 1245689
Q ss_pred EcCCCCEEEEEEcCCCeEEEEEeec
Q 026118 159 LSEDERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 159 ~~~dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
|+|.|+||-.+ ..++.|..+|.+.
T Consensus 240 wsPnG~YiAAs-~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 240 WSPNGKYIAAS-TLDGQILVWNVDT 263 (933)
T ss_pred EcCCCcEEeee-ccCCcEEEEeccc
Confidence 99999977766 4578999999874
No 110
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.60 E-value=0.014 Score=45.47 Aligned_cols=144 Identities=18% Similarity=0.115 Sum_probs=81.0
Q ss_pred CCCcEEEEeCCCcEEEEc-cCCceeEe-cccCC---ccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCC
Q 026118 19 GNGVLYTATGDGWIKRMH-PNGTWEDW-HQVGS---QSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGS 91 (243)
Q Consensus 19 ~~g~l~~~~~~~~i~~~~-~~g~~~~~-~~~~~---~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~ 91 (243)
.++.+|+...++.|+.+| .+|+...- ..... .....+....+++.++++.....|+.+| .+| ...-.. ....
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~-~~~~ 153 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYP-VGEP 153 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEE-SSTT
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEee-cCCC
Confidence 467888888777999999 67875543 11110 0110223333355548887677899999 788 322222 1111
Q ss_pred ccc-------CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCC
Q 026118 92 QLR-------FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDER 164 (243)
Q Consensus 92 ~~~-------~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~ 164 (243)
... ...+-.+-.+|.+|++... +.++.+|..+++... .........+ ...++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------------------g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~ 213 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDGRVYVSSGD------------------GRVVAVDLATGEKLW-SKPISGIYSL-PSVDGG 213 (238)
T ss_dssp -SS--EEEETTEEEEEECCTTEEEEECCT------------------SSEEEEETTTTEEEE-EECSS-ECEC-EECCCT
T ss_pred CCCcceeeecccccceEEECCEEEEEcCC------------------CeEEEEECCCCCEEE-EecCCCccCC-ceeeCC
Confidence 100 0112223335688887533 347777999887443 2222223331 335667
Q ss_pred EEEEEEcCCCeEEEEEeecC
Q 026118 165 FLVVCESWKFRCVKHFLKVS 184 (243)
Q Consensus 165 ~l~v~~~~~~~i~~~~~~~~ 184 (243)
.||+.+ ..+.|+.+|+.++
T Consensus 214 ~l~~~~-~~~~l~~~d~~tG 232 (238)
T PF13360_consen 214 TLYVTS-SDGRLYALDLKTG 232 (238)
T ss_dssp EEEEEE-TTTEEEEEETTTT
T ss_pred EEEEEe-CCCEEEEEECCCC
Confidence 799987 6789999997653
No 111
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.59 E-value=0.015 Score=44.10 Aligned_cols=133 Identities=15% Similarity=0.074 Sum_probs=75.0
Q ss_pred cEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeC--CCcEEEEecCCcEEEEeccCCCcccCCccEEEcCCCcE
Q 026118 31 WIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS--QQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSL 107 (243)
Q Consensus 31 ~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~--~~gl~~~~~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l 107 (243)
.|++++ .+.....+......+...++.+|+|+.+.+... ...+..++..+ +.+.. .. ....+.|..+|+|++
T Consensus 40 ~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-~~i~~-~~---~~~~n~i~wsP~G~~ 114 (194)
T PF08662_consen 40 ELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-KKIFS-FG---TQPRNTISWSPDGRF 114 (194)
T ss_pred EEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc-cEeEe-ec---CCCceEEEECCCCCE
Confidence 467776 334444433322223338899999987344432 23466666333 11111 11 134567899999997
Q ss_pred EEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC-----CCeEEEEEee
Q 026118 108 YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW-----KFRCVKHFLK 182 (243)
Q Consensus 108 ~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~-----~~~i~~~~~~ 182 (243)
.+.... +...|.|..+|.++.+.... ........+++||+|+++..+... ++.+..++.+
T Consensus 115 l~~~g~--------------~n~~G~l~~wd~~~~~~i~~-~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 115 LVLAGF--------------GNLNGDLEFWDVRKKKKIST-FEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEEEc--------------cCCCcEEEEEECCCCEEeec-cccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 765321 11335688888874433221 223346789999999988776542 3555666655
Q ss_pred c
Q 026118 183 V 183 (243)
Q Consensus 183 ~ 183 (243)
+
T Consensus 180 G 180 (194)
T PF08662_consen 180 G 180 (194)
T ss_pred C
Confidence 5
No 112
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.57 E-value=0.006 Score=51.65 Aligned_cols=132 Identities=14% Similarity=0.182 Sum_probs=77.4
Q ss_pred CCcEEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEec-cCCCcccCC
Q 026118 20 NGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQ-FNGSQLRFA 96 (243)
Q Consensus 20 ~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~-~~~~~~~~~ 96 (243)
++.+|++..++.++.+| .+|+.. |......+. .++. .++++ |+++..+.++.++ .+|....... .......
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~-W~~~~~~~~-~~~~-~~~~v-y~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~-- 329 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIV-WKREYGSVN-DFAV-DGGRI-YLVDQNDRVYALDTRGGVELWSQSDLLHRLLT-- 329 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEE-EeecCCCcc-CcEE-ECCEE-EEEcCCCeEEEEECCCCcEEEcccccCCCccc--
Confidence 57899888888999999 466643 332222223 3333 24556 9988777899999 6773322211 1111111
Q ss_pred ccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec--cccccceEEEcCCCCEEEEEEcCCC
Q 026118 97 NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--GLYFANGVALSEDERFLVVCESWKF 174 (243)
Q Consensus 97 ~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~--~~~~~~gi~~~~dg~~l~v~~~~~~ 174 (243)
..++ .+|.+|+++. .|.|+.+|+++|+...-.. ........++. +++ ||+.. .++
T Consensus 330 -sp~v-~~g~l~v~~~------------------~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~-~~~-l~v~t-~~G 386 (394)
T PRK11138 330 -APVL-YNGYLVVGDS------------------EGYLHWINREDGRFVAQQKVDSSGFLSEPVVA-DDK-LLIQA-RDG 386 (394)
T ss_pred -CCEE-ECCEEEEEeC------------------CCEEEEEECCCCCEEEEEEcCCCcceeCCEEE-CCE-EEEEe-CCc
Confidence 2222 3688999853 3689999999887653221 11122223332 454 99985 457
Q ss_pred eEEEEE
Q 026118 175 RCVKHF 180 (243)
Q Consensus 175 ~i~~~~ 180 (243)
.|+.++
T Consensus 387 ~l~~~~ 392 (394)
T PRK11138 387 TVYAIT 392 (394)
T ss_pred eEEEEe
Confidence 888775
No 113
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.55 E-value=0.022 Score=47.01 Aligned_cols=170 Identities=18% Similarity=0.192 Sum_probs=95.2
Q ss_pred ccCCcccEEEc-CCCcEEEEeCCCc------EEEEc--c-CC---ceeE-----ecccCC--------ccccceEEccCC
Q 026118 8 IVNHPEDVSVD-GNGVLYTATGDGW------IKRMH--P-NG---TWED-----WHQVGS--------QSLLGLTTTKEN 61 (243)
Q Consensus 8 ~~~~p~~i~~d-~~g~l~~~~~~~~------i~~~~--~-~g---~~~~-----~~~~~~--------~~~~~i~~~~~g 61 (243)
++.+-.+|+++ .+|++|+.++++. ++.+. . .+ .+.. .....+ .+. +|++.++|
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~E-gi~~~~~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPE-GIAVPPDG 96 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChh-HeEEecCC
Confidence 35566789999 5777776666665 66554 1 11 1111 111111 345 78888889
Q ss_pred CEEEEEeCCC-------cEEEEecCC-c-EEEE--ecc-------C-CCcccCCccEEEcCCCc-EEEEeCCCCCCcccc
Q 026118 62 NVIIVCDSQQ-------GLLKVSEEG-V-TVLV--SQF-------N-GSQLRFANDVIEASDGS-LYFTVSSTKFTPAEY 121 (243)
Q Consensus 62 ~l~~v~~~~~-------gl~~~~~~g-~-~~~~--~~~-------~-~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~ 121 (243)
.+ ||+.... .|++++.+| . +.+. ... . ........+|++.++|+ +|++..+.-.+...
T Consensus 97 ~~-~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~- 174 (326)
T PF13449_consen 97 SF-WISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP- 174 (326)
T ss_pred CE-EEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc-
Confidence 98 8887644 588998556 3 3331 111 1 12345677899999998 88875431000000
Q ss_pred cccccccCCCceEEEEeCCC-Ce-eEEe---ec------cccccceEEEcCCCCEEEEEEcC-------CCeEEEEEee
Q 026118 122 YLDLVSGEPHGVLLKYDPST-NQ-TSLV---LD------GLYFANGVALSEDERFLVVCESW-------KFRCVKHFLK 182 (243)
Q Consensus 122 ~~~~~~~~~~g~v~~~~~~~-~~-~~~~---~~------~~~~~~gi~~~~dg~~l~v~~~~-------~~~i~~~~~~ 182 (243)
.........-+|+++++.+ ++ ...+ .. ....+..|+.-++++ ++|.+.. ..+|+++++.
T Consensus 175 -~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 175 -RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGNYKRIYRVDLS 251 (326)
T ss_pred -ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccceEEEEEEEcc
Confidence 0000011124788999875 21 2222 11 234455677788998 8888764 3456777764
No 114
>PTZ00421 coronin; Provisional
Probab=97.52 E-value=0.052 Score=47.34 Aligned_cols=150 Identities=15% Similarity=0.101 Sum_probs=87.6
Q ss_pred cccEEEcC-CCc-EEEEeCCCcEEEEc-cCCc--------eeEecccCCccccceEEccCC-CEEEEEeCCCcEEEEe-c
Q 026118 12 PEDVSVDG-NGV-LYTATGDGWIKRMH-PNGT--------WEDWHQVGSQSLLGLTTTKEN-NVIIVCDSQQGLLKVS-E 78 (243)
Q Consensus 12 p~~i~~d~-~g~-l~~~~~~~~i~~~~-~~g~--------~~~~~~~~~~~~~~i~~~~~g-~l~~v~~~~~gl~~~~-~ 78 (243)
-.++++.+ ++. |..+..++.|..++ +++. +..+... ......+.+++++ ++|..+..+.-|..+| .
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH-~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~ 156 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH-TKKVGIVSFHPSAMNVLASAGADMVVNVWDVE 156 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC-CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC
Confidence 34688887 665 55666888898888 3321 1112111 2223378899875 5645555544566777 5
Q ss_pred CC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc--cccc
Q 026118 79 EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--YFAN 155 (243)
Q Consensus 79 ~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~--~~~~ 155 (243)
++ ..... .. ....+.++++.++|++.++.+ ..+.|..+|+.+++........ ....
T Consensus 157 tg~~~~~l---~~-h~~~V~sla~spdG~lLatgs-----------------~Dg~IrIwD~rsg~~v~tl~~H~~~~~~ 215 (493)
T PTZ00421 157 RGKAVEVI---KC-HSDQITSLEWNLDGSLLCTTS-----------------KDKKLNIIDPRDGTIVSSVEAHASAKSQ 215 (493)
T ss_pred CCeEEEEE---cC-CCCceEEEEEECCCCEEEEec-----------------CCCEEEEEECCCCcEEEEEecCCCCcce
Confidence 55 22111 11 123467889999999877643 2457888898876643322221 2234
Q ss_pred eEEEcCCCCEEEEEEc---CCCeEEEEEeec
Q 026118 156 GVALSEDERFLVVCES---WKFRCVKHFLKV 183 (243)
Q Consensus 156 gi~~~~dg~~l~v~~~---~~~~i~~~~~~~ 183 (243)
.+.+.+++..+..+.. .++.|..||+..
T Consensus 216 ~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 216 RCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred EEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 5677787775554432 246788888753
No 115
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.52 E-value=0.014 Score=46.65 Aligned_cols=151 Identities=14% Similarity=0.114 Sum_probs=91.8
Q ss_pred cccEEEcCCCcEEEEe-CCCcEEEEc-cCCc-eeEecccCCccccceEEcc-CCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118 12 PEDVSVDGNGVLYTAT-GDGWIKRMH-PNGT-WEDWHQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVS-EEG-VTVLV 85 (243)
Q Consensus 12 p~~i~~d~~g~l~~~~-~~~~i~~~~-~~g~-~~~~~~~~~~~~~~i~~~~-~g~l~~v~~~~~gl~~~~-~~g-~~~~~ 85 (243)
-.++++.++|+..++. .+..|..+| ..|. ...+.. ..|.++..+.| +.+...++.....-+.++ .+. .+.+.
T Consensus 68 i~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf--~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp 145 (405)
T KOG1273|consen 68 ITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF--DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLP 145 (405)
T ss_pred eeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc--cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeecc
Confidence 3569999999866554 777888888 4554 333332 34554666654 445523443444444444 334 44455
Q ss_pred eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--ccccccceEEEcCCC
Q 026118 86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFANGVALSEDE 163 (243)
Q Consensus 86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--~~~~~~~gi~~~~dg 163 (243)
...++.....+....+|+.|++.++. ...|.+..|+..+-+..... ........|.++..|
T Consensus 146 ~d~d~dln~sas~~~fdr~g~yIitG-----------------tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g 208 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFDRRGKYIITG-----------------TSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG 208 (405)
T ss_pred CCCccccccccccccccCCCCEEEEe-----------------cCcceEEEEecchheeeeeeeechheeeeEEEEeccC
Confidence 55555444455555788999866652 23578999998866543321 122445678999999
Q ss_pred CEEEEEEcCCCeEEEEEee
Q 026118 164 RFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 164 ~~l~v~~~~~~~i~~~~~~ 182 (243)
+ .++.++.+..|..|+..
T Consensus 209 ~-~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 209 R-FLIINTSDRVIRTYEIS 226 (405)
T ss_pred c-EEEEecCCceEEEEehh
Confidence 9 56666777778878765
No 116
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.51 E-value=0.00022 Score=35.78 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.8
Q ss_pred cccceEEEcCCCCEEEEEEcCCCeEEEE
Q 026118 152 YFANGVALSEDERFLVVCESWKFRCVKH 179 (243)
Q Consensus 152 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~ 179 (243)
..|.|++++++|+ +||++..+++|.+|
T Consensus 2 ~~P~gvav~~~g~-i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDGN-IYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence 4689999998888 99999999998865
No 117
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=97.51 E-value=0.018 Score=48.61 Aligned_cols=144 Identities=13% Similarity=0.074 Sum_probs=82.7
Q ss_pred EEEcCCCcEEEEeCCCcEEEEccCCc--eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEecCC-cE---EEEecc
Q 026118 15 VSVDGNGVLYTATGDGWIKRMHPNGT--WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VT---VLVSQF 88 (243)
Q Consensus 15 i~~d~~g~l~~~~~~~~i~~~~~~g~--~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g-~~---~~~~~~ 88 (243)
+...++|.+++....|.+++-..+|. +............++.+.++|.+ |++....++++-..+| .. .+....
T Consensus 244 v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l-~l~g~~G~l~~S~d~G~~~~~~~f~~~~ 322 (398)
T PLN00033 244 VNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGL-WLLTRGGGLYVSKGTGLTEEDFDFEEAD 322 (398)
T ss_pred EEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCE-EEEeCCceEEEecCCCCcccccceeecc
Confidence 45567787777766677777665554 35544433333337888899999 8887666666655444 11 222211
Q ss_pred CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--ccc-cccceEEEcCCCCE
Q 026118 89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGL-YFANGVALSEDERF 165 (243)
Q Consensus 89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--~~~-~~~~gi~~~~dg~~ 165 (243)
.......+.++.+.+++++|++-. .|.+++-...+..++... ... ..-..+.|.++++
T Consensus 323 ~~~~~~~l~~v~~~~d~~~~a~G~------------------~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~- 383 (398)
T PLN00033 323 IKSRGFGILDVGYRSKKEAWAAGG------------------SGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKK- 383 (398)
T ss_pred cCCCCcceEEEEEcCCCcEEEEEC------------------CCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCc-
Confidence 111112356777888999999842 244555444433334432 111 1234678777777
Q ss_pred EEEEEcCCCeEEEE
Q 026118 166 LVVCESWKFRCVKH 179 (243)
Q Consensus 166 l~v~~~~~~~i~~~ 179 (243)
.|+.. .++.|.+|
T Consensus 384 g~~~G-~~G~il~~ 396 (398)
T PLN00033 384 GFVLG-NDGVLLRY 396 (398)
T ss_pred eEEEe-CCcEEEEe
Confidence 88875 35677766
No 118
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.48 E-value=0.027 Score=45.38 Aligned_cols=153 Identities=14% Similarity=0.103 Sum_probs=84.8
Q ss_pred ccccceEEccC-CCEEEEEeCC-CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccc
Q 026118 50 QSLLGLTTTKE-NNVIIVCDSQ-QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDL 125 (243)
Q Consensus 50 ~~~~~i~~~~~-g~l~~v~~~~-~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~ 125 (243)
+.. +++.+|. +..+.++-.- .-++++| .+| ........++. .+.-.-++++||++.+++.+.
T Consensus 6 RgH-~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEnd----------- 71 (305)
T PF07433_consen 6 RGH-GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTEND----------- 71 (305)
T ss_pred ccc-ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEeccc-----------
Confidence 445 7788874 4443444322 2367888 666 33333222221 222234789999876665331
Q ss_pred cccCCCceEEEEeCCCCeeEEe---eccccccceEEEcCCCCEEEEEEcC-----------------CCeEEEEEeecCC
Q 026118 126 VSGEPHGVLLKYDPSTNQTSLV---LDGLYFANGVALSEDERFLVVCESW-----------------KFRCVKHFLKVSG 185 (243)
Q Consensus 126 ~~~~~~g~v~~~~~~~~~~~~~---~~~~~~~~gi~~~~dg~~l~v~~~~-----------------~~~i~~~~~~~~~ 185 (243)
.....|.|-.||.. ..++++ ....-.|..|.+.+||++|.|++-+ ..+|..+|...+.
T Consensus 72 -~~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ 149 (305)
T PF07433_consen 72 -YETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA 149 (305)
T ss_pred -cCCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc
Confidence 12345778888887 455554 3344568889999999889998531 1233333333222
Q ss_pred CcceEEeccC-CCCCCCceEECCCCCEEEEEecC
Q 026118 186 RTDREIFIDN-LPGGPDNVNLARDGSFWISIIKM 218 (243)
Q Consensus 186 ~~~~~~~~~~-~~~~~~~i~~d~~G~lwv~~~~~ 218 (243)
+-....+... ..-...-|+++.+|.+|++...-
T Consensus 150 ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~q 183 (305)
T PF07433_consen 150 LLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQ 183 (305)
T ss_pred eeeeeecCccccccceeeEEecCCCcEEEEEecC
Confidence 2221111111 11134559999999999987543
No 119
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.44 E-value=0.044 Score=44.60 Aligned_cols=148 Identities=12% Similarity=0.062 Sum_probs=83.9
Q ss_pred cEEEcCCCcEEEEe-CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cE-EEEecc
Q 026118 14 DVSVDGNGVLYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VT-VLVSQF 88 (243)
Q Consensus 14 ~i~~d~~g~l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~-~~~~~~ 88 (243)
+++..|+.+|.++. .+..-+.++ .+|.+..-..........+.|+.+|.+|..++..+.|..+. .+| .+ .+.
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~--- 145 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD--- 145 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee---
Confidence 35556654544433 555667776 35553322222122333788999998844444444455666 555 22 222
Q ss_pred CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccc-cceEEEcCCCCEEE
Q 026118 89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF-ANGVALSEDERFLV 167 (243)
Q Consensus 89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~-~~gi~~~~dg~~l~ 167 (243)
.....+.-|...|.+.++++-+ ..|.||.+...++...++..+... .+.=.|.|+|+.+.
T Consensus 146 --~e~~dieWl~WHp~a~illAG~-----------------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~ 206 (399)
T KOG0296|consen 146 --QEVEDIEWLKWHPRAHILLAGS-----------------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRIL 206 (399)
T ss_pred --cccCceEEEEecccccEEEeec-----------------CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEE
Confidence 1122334567778888777632 356788877765444444333332 23336779999676
Q ss_pred EEEcCCCeEEEEEeecC
Q 026118 168 VCESWKFRCVKHFLKVS 184 (243)
Q Consensus 168 v~~~~~~~i~~~~~~~~ 184 (243)
... .++.|..+++...
T Consensus 207 tgy-~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 207 TGY-DDGTIIVWNPKTG 222 (399)
T ss_pred EEe-cCceEEEEecCCC
Confidence 664 5789999998753
No 120
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.43 E-value=0.027 Score=47.23 Aligned_cols=145 Identities=18% Similarity=0.213 Sum_probs=83.5
Q ss_pred EEcCCCcEEEEeCCCcEEEEccCCceeEecccCC---ccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCC
Q 026118 16 SVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGS---QSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNG 90 (243)
Q Consensus 16 ~~d~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~~---~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~ 90 (243)
.++.+|.+|++..+|.|+.++++.-...|..... ...++-.+..+|++ |+++....++.+| .+| ....... ..
T Consensus 64 ~~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i-~~g~~~g~~y~ld~~~G~~~W~~~~-~~ 141 (370)
T COG1520 64 PADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKI-YVGSWDGKLYALDASTGTLVWSRNV-GG 141 (370)
T ss_pred cEeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeE-EEecccceEEEEECCCCcEEEEEec-CC
Confidence 3677899999988889999995443322322111 11213334448998 9998765599999 488 4433322 11
Q ss_pred CcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-----cccccceEEEcCCCCE
Q 026118 91 SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-----GLYFANGVALSEDERF 165 (243)
Q Consensus 91 ~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-----~~~~~~gi~~~~dg~~ 165 (243)
. ....+-++-.++.+|+.+. .+.++.++.++|+...... ......... ..++.
T Consensus 142 ~--~~~~~~~v~~~~~v~~~s~------------------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~- 199 (370)
T COG1520 142 S--PYYASPPVVGDGTVYVGTD------------------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGT- 199 (370)
T ss_pred C--eEEecCcEEcCcEEEEecC------------------CCeEEEEEccCCcEEEEEecCCccccccccCce-eecce-
Confidence 0 0111224456788888732 3589999999887654311 111111222 34555
Q ss_pred EEEEEcC-CCeEEEEEeecC
Q 026118 166 LVVCESW-KFRCVKHFLKVS 184 (243)
Q Consensus 166 l~v~~~~-~~~i~~~~~~~~ 184 (243)
+|+.... +..++.++...+
T Consensus 200 vy~~~~~~~~~~~a~~~~~G 219 (370)
T COG1520 200 VYVGSDGYDGILYALNAEDG 219 (370)
T ss_pred EEEecCCCcceEEEEEccCC
Confidence 8877543 446888887543
No 121
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.43 E-value=0.023 Score=51.41 Aligned_cols=134 Identities=14% Similarity=0.134 Sum_probs=79.3
Q ss_pred EEEEeCCCcEEEEc-cCCc----eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEeccCCCccc
Q 026118 23 LYTATGDGWIKRMH-PNGT----WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVSQFNGSQLR 94 (243)
Q Consensus 23 l~~~~~~~~i~~~~-~~g~----~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~~~~~~~~~ 94 (243)
+.+++.++.|.++. +.+. ..++.. |...++++.+|+++.++..+..|-.++ .+. .+++.. .. .
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~iL~Rftl----p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~----a 139 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDTILARFTL----PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HD----A 139 (933)
T ss_pred eEEeeccceEEEeeCCCCCccceeeeeec----cceEEEEecCCcEEEeecCceeEEEEeccccchheeecc-cC----C
Confidence 33444555565554 3332 333332 333788999999834444344666666 444 333322 11 2
Q ss_pred CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc---------cccceEEEcCCCCE
Q 026118 95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL---------YFANGVALSEDERF 165 (243)
Q Consensus 95 ~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~---------~~~~gi~~~~dg~~ 165 (243)
.+-++.++|.|++..+.+ ..|.|+.++.+++.+....++. .....++|+|+|..
T Consensus 140 pVl~l~~~p~~~fLAvss-----------------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~ 202 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSS-----------------CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT 202 (933)
T ss_pred ceeeeeEcCCCCEEEEEe-----------------cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe
Confidence 345788999998777633 3578999999877655433221 12346899999665
Q ss_pred EEEEEcCCCeEEEEEeec
Q 026118 166 LVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 166 l~v~~~~~~~i~~~~~~~ 183 (243)
+.+.. .++.|..|+..+
T Consensus 203 la~~~-~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 203 LAVPP-VDNTVKVYSRKG 219 (933)
T ss_pred EEeec-cCCeEEEEccCC
Confidence 65553 457888888764
No 122
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.42 E-value=0.028 Score=49.11 Aligned_cols=180 Identities=17% Similarity=0.144 Sum_probs=100.2
Q ss_pred cEEEcCCCcEE-EEe-CCCcEEEEccCCceeEeccc----CCccccceEEccCCCEEEEEeC-CCcEEEEe-cCC-cEEE
Q 026118 14 DVSVDGNGVLY-TAT-GDGWIKRMHPNGTWEDWHQV----GSQSLLGLTTTKENNVIIVCDS-QQGLLKVS-EEG-VTVL 84 (243)
Q Consensus 14 ~i~~d~~g~l~-~~~-~~~~i~~~~~~g~~~~~~~~----~~~~~~~i~~~~~g~l~~v~~~-~~gl~~~~-~~g-~~~~ 84 (243)
+-+..|+|++. +++ .+=.||++.+++.++..... ...+...+.+..|+++++++.. ...+..++ .+. .+.+
T Consensus 387 ~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel 466 (691)
T KOG2048|consen 387 CAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKEL 466 (691)
T ss_pred eeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhh
Confidence 34556788654 454 55678999876654433211 0111214666666665566552 23466665 333 3333
Q ss_pred EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecccc-ccceEEEcC-C
Q 026118 85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLY-FANGVALSE-D 162 (243)
Q Consensus 85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~-~~~gi~~~~-d 162 (243)
........-..+..|+++++|+.+.+-+ ..+.|+.|+.++++...+...+. ....++++| +
T Consensus 467 ~~~~~~~~~~~I~~l~~SsdG~yiaa~~-----------------t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~ 529 (691)
T KOG2048|consen 467 KSIQSQAKCPSISRLVVSSDGNYIAAIS-----------------TRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFV 529 (691)
T ss_pred hccccccCCCcceeEEEcCCCCEEEEEe-----------------ccceEEEEEcccceeecchhccCcceeeeeccccc
Confidence 2211112335677889999998666532 34689999999888776653333 334567774 3
Q ss_pred CCEEEEEEcCCCeEEEEEeecCCCcce-----EEecc---CCCCCCCceEECCCCCE
Q 026118 163 ERFLVVCESWKFRCVKHFLKVSGRTDR-----EIFID---NLPGGPDNVNLARDGSF 211 (243)
Q Consensus 163 g~~l~v~~~~~~~i~~~~~~~~~~~~~-----~~~~~---~~~~~~~~i~~d~~G~l 211 (243)
.+.|.++. .+++++.|++....+++. +.++. .......++.+|+.+..
T Consensus 530 ~~~lvvat-s~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s 585 (691)
T KOG2048|consen 530 RNRLVVAT-SNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSS 585 (691)
T ss_pred cCcEEEEe-cCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCcc
Confidence 34477775 578999999853322221 11111 11223456888877653
No 123
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.42 E-value=0.014 Score=49.48 Aligned_cols=167 Identities=14% Similarity=0.077 Sum_probs=88.3
Q ss_pred CCcEEEEeCCCcEEEEc-cCCceeEecccCCcc------------ccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEE
Q 026118 20 NGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQS------------LLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLV 85 (243)
Q Consensus 20 ~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~------------~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~ 85 (243)
++.+|++..++.++.++ .+|+.. |......+ .....+ .++.+ |++...+.++.+| .+|.....
T Consensus 205 ~~~v~~~~~~g~v~a~d~~~G~~~-W~~~~~~~~~~~~~~~~~~~~~sP~v-~~~~v-y~~~~~g~l~ald~~tG~~~W~ 281 (394)
T PRK11138 205 FGGAIVGGDNGRVSAVLMEQGQLI-WQQRISQPTGATEIDRLVDVDTTPVV-VGGVV-YALAYNGNLVALDLRSGQIVWK 281 (394)
T ss_pred CCEEEEEcCCCEEEEEEccCChhh-heeccccCCCccchhcccccCCCcEE-ECCEE-EEEEcCCeEEEEECCCCCEEEe
Confidence 45678887778888888 456532 11110011 001122 24555 8888777899999 77732222
Q ss_pred eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--ccccceEEEcCCC
Q 026118 86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGVALSEDE 163 (243)
Q Consensus 86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~~gi~~~~dg 163 (243)
.... .+..+++ .++++|+++. .+.|+.+|.++|+...-... .....+.++. ++
T Consensus 282 ~~~~-----~~~~~~~-~~~~vy~~~~------------------~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g 336 (394)
T PRK11138 282 REYG-----SVNDFAV-DGGRIYLVDQ------------------NDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-NG 336 (394)
T ss_pred ecCC-----CccCcEE-ECCEEEEEcC------------------CCeEEEEECCCCcEEEcccccCCCcccCCEEE-CC
Confidence 2111 1123333 3678999853 36899999998865432111 1112223332 44
Q ss_pred CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118 164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD 219 (243)
Q Consensus 164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~ 219 (243)
.+|+.+ .++.|+.++.+++.......+. ..+......+ .+|+|||++.++.
T Consensus 337 -~l~v~~-~~G~l~~ld~~tG~~~~~~~~~--~~~~~s~P~~-~~~~l~v~t~~G~ 387 (394)
T PRK11138 337 -YLVVGD-SEGYLHWINREDGRFVAQQKVD--SSGFLSEPVV-ADDKLLIQARDGT 387 (394)
T ss_pred -EEEEEe-CCCEEEEEECCCCCEEEEEEcC--CCcceeCCEE-ECCEEEEEeCCce
Confidence 488886 4578999887654322211111 1112222233 3567999877654
No 124
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.39 E-value=0.042 Score=43.22 Aligned_cols=172 Identities=17% Similarity=0.111 Sum_probs=97.0
Q ss_pred EEEEeCCCcEEEEccC------CceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-c-EEEEeccCCCcc
Q 026118 23 LYTATGDGWIKRMHPN------GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-V-TVLVSQFNGSQL 93 (243)
Q Consensus 23 l~~~~~~~~i~~~~~~------g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~-~~~~~~~~~~~~ 93 (243)
|+.+..+..++.++.+ |.+.+.......-...++..+||++++.+.+++-+..+| .+| . +.+... .
T Consensus 31 l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH-----~ 105 (315)
T KOG0279|consen 31 LVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGH-----T 105 (315)
T ss_pred EEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEec-----C
Confidence 3444466667666521 222222221122232788999999955555444456667 666 3 333221 1
Q ss_pred cCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--ccccceEEEcCCC-CEEEEEE
Q 026118 94 RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGVALSEDE-RFLVVCE 170 (243)
Q Consensus 94 ~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~~gi~~~~dg-~~l~v~~ 170 (243)
.-+-++++++|.+-.++-+. ...|-.++..+.-.-.+..+ ..+.+.+.|+|.. +-+.+..
T Consensus 106 ~dVlsva~s~dn~qivSGSr-----------------DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~ 168 (315)
T KOG0279|consen 106 KDVLSVAFSTDNRQIVSGSR-----------------DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSA 168 (315)
T ss_pred CceEEEEecCCCceeecCCC-----------------cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEc
Confidence 34558899999988887443 23455555553322222322 4567889999986 4344555
Q ss_pred cCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118 171 SWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD 219 (243)
Q Consensus 171 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~ 219 (243)
..+..|-.+|.++-.+. ..+. +..++..-+++++||.|-.+...++
T Consensus 169 s~DktvKvWnl~~~~l~--~~~~-gh~~~v~t~~vSpDGslcasGgkdg 214 (315)
T KOG0279|consen 169 SWDKTVKVWNLRNCQLR--TTFI-GHSGYVNTVTVSPDGSLCASGGKDG 214 (315)
T ss_pred cCCceEEEEccCCcchh--hccc-cccccEEEEEECCCCCEEecCCCCc
Confidence 66788888887753221 2222 3445666688888888777644333
No 125
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.39 E-value=0.025 Score=46.63 Aligned_cols=111 Identities=15% Similarity=0.171 Sum_probs=64.5
Q ss_pred CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCee-EEe--ecc-------------ccccceEE
Q 026118 95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT-SLV--LDG-------------LYFANGVA 158 (243)
Q Consensus 95 ~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~-~~~--~~~-------------~~~~~gi~ 158 (243)
-+.+|++.++|.+|+++-... .......|++++++ |++ +.+ ... ....-+|+
T Consensus 86 D~Egi~~~~~g~~~is~E~~~-----------~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la 153 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGR-----------TGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLA 153 (326)
T ss_pred ChhHeEEecCCCEEEEeCCcc-----------CCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEE
Confidence 456889988999999964310 00112579999988 554 222 111 11234799
Q ss_pred EcCCCCEEEEEEcCC---------------CeEEEEEeecCC-CcceEEeccC------CCCCCCceEECCCCCEEEEEe
Q 026118 159 LSEDERFLVVCESWK---------------FRCVKHFLKVSG-RTDREIFIDN------LPGGPDNVNLARDGSFWISII 216 (243)
Q Consensus 159 ~~~dg~~l~v~~~~~---------------~~i~~~~~~~~~-~~~~~~~~~~------~~~~~~~i~~d~~G~lwv~~~ 216 (243)
+++||+.||++.... -+|++|+..... ......+... ....+..++.-++|+++|-..
T Consensus 154 ~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER 233 (326)
T PF13449_consen 154 VSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER 233 (326)
T ss_pred ECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence 999999888875432 346667765421 1222222211 123455566667888888665
Q ss_pred c
Q 026118 217 K 217 (243)
Q Consensus 217 ~ 217 (243)
.
T Consensus 234 ~ 234 (326)
T PF13449_consen 234 D 234 (326)
T ss_pred c
Confidence 5
No 126
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.36 E-value=0.00042 Score=34.74 Aligned_cols=27 Identities=33% Similarity=0.647 Sum_probs=22.1
Q ss_pred cCCcccEEEcCCCcEEEEe-CCCcEEEE
Q 026118 9 VNHPEDVSVDGNGVLYTAT-GDGWIKRM 35 (243)
Q Consensus 9 ~~~p~~i~~d~~g~l~~~~-~~~~i~~~ 35 (243)
+..|.+|+++++|.||+++ .+.+|.++
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4689999999999999998 56666543
No 127
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.35 E-value=0.015 Score=51.99 Aligned_cols=180 Identities=15% Similarity=0.153 Sum_probs=100.6
Q ss_pred CcccEEEcCCCc-EEEEeCCCcEEEEc-cCCce-eEec--ccCCccccceEEccCCCEEEEEeCCCcEEEEe--cCCcEE
Q 026118 11 HPEDVSVDGNGV-LYTATGDGWIKRMH-PNGTW-EDWH--QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EEGVTV 83 (243)
Q Consensus 11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~~-~~~~--~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~--~~g~~~ 83 (243)
...+++++.-|+ .++|...|-|-+++ ..|-. ..|. .....+..+++.|.-+++ .|+....|++.|. .+.. .
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~-~vsa~~~Gilkfw~f~~k~-l 527 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRL-LVSAGADGILKFWDFKKKV-L 527 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCce-EEEccCcceEEEEecCCcc-e
Confidence 345678888886 66777788888888 34432 2221 111234449999988888 6666678888776 3332 1
Q ss_pred EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-eeccccccceEEEcCC
Q 026118 84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VLDGLYFANGVALSED 162 (243)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-~~~~~~~~~gi~~~~d 162 (243)
+.. ..- ...+.++.......+++.- ...-.|..||..+.++.+ +.......+.+.||+|
T Consensus 528 ~~~-l~l--~~~~~~iv~hr~s~l~a~~-----------------~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D 587 (910)
T KOG1539|consen 528 KKS-LRL--GSSITGIVYHRVSDLLAIA-----------------LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD 587 (910)
T ss_pred eee-ecc--CCCcceeeeeehhhhhhhh-----------------cCceeEEEEEchhhhhhHHhhccccceeeeEeCCC
Confidence 111 110 0123344333332233221 012367788887655443 3344567789999999
Q ss_pred CCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118 163 ERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK 217 (243)
Q Consensus 163 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 217 (243)
|+||..+. .++.|..||+-...+-..-.+ +.-+-.+.++++|.+......
T Consensus 588 grWlisas-mD~tIr~wDlpt~~lID~~~v----d~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 588 GRWLISAS-MDSTIRTWDLPTGTLIDGLLV----DSPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred CcEEEEee-cCCcEEEEeccCcceeeeEec----CCcceeeEECCCCCEEEEEEe
Confidence 99888885 468899999754322111111 112344666666665444433
No 128
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.35 E-value=0.017 Score=45.78 Aligned_cols=124 Identities=10% Similarity=0.089 Sum_probs=64.8
Q ss_pred CccccceEEccCCCEEEEEeCC------C------------cEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEE
Q 026118 49 SQSLLGLTTTKENNVIIVCDSQ------Q------------GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLY 108 (243)
Q Consensus 49 ~~~~~~i~~~~~g~l~~v~~~~------~------------gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~ 108 (243)
..|. .+.+.+||+++.+++.+ . .+..++ .+| ......-+......++..|++++||++|
T Consensus 162 iGpH-ev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvw 240 (366)
T COG3490 162 IGPH-EVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVW 240 (366)
T ss_pred cCcc-eeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEE
Confidence 3456 67888999986676531 1 144444 444 2111111222234577889999999999
Q ss_pred EEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--cc-----ccccceEEEcCCCCEEEEEEcCCCeEEEEEe
Q 026118 109 FTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DG-----LYFANGVALSEDERFLVVCESWKFRCVKHFL 181 (243)
Q Consensus 109 v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--~~-----~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~ 181 (243)
++..-.+ +. ....-|.-.-..++.++.+. +. ..+.-+|+.+.+..++-++....+....+|.
T Consensus 241 fgcQy~G--~~---------~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da 309 (366)
T COG3490 241 FGCQYRG--PR---------NDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDA 309 (366)
T ss_pred EEEEeeC--CC---------ccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEc
Confidence 9853210 00 00011222222223333321 11 1233467877666656667667778888887
Q ss_pred ecC
Q 026118 182 KVS 184 (243)
Q Consensus 182 ~~~ 184 (243)
+.+
T Consensus 310 ~tG 312 (366)
T COG3490 310 ATG 312 (366)
T ss_pred CCC
Confidence 654
No 129
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.35 E-value=0.031 Score=47.90 Aligned_cols=48 Identities=6% Similarity=-0.146 Sum_probs=33.3
Q ss_pred CceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC--CCeEEE
Q 026118 131 HGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW--KFRCVK 178 (243)
Q Consensus 131 ~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~ 178 (243)
...||.++.++++.+++..........+|+|||+.|.++... ...++.
T Consensus 210 ~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~ 259 (428)
T PRK01029 210 VPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFI 259 (428)
T ss_pred CceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeE
Confidence 357999999988877775433444567999999888776532 234555
No 130
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.33 E-value=0.0032 Score=53.15 Aligned_cols=170 Identities=11% Similarity=0.029 Sum_probs=96.3
Q ss_pred EcCCCc-EEEEeCCCcEEEEcc---CCceeEecc-cCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEecc
Q 026118 17 VDGNGV-LYTATGDGWIKRMHP---NGTWEDWHQ-VGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVSQF 88 (243)
Q Consensus 17 ~d~~g~-l~~~~~~~~i~~~~~---~g~~~~~~~-~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~~~ 88 (243)
..+||+ |.++.....+..+|. +-+++.-.. ...... .++.++|-++.|.+-.++.|..+| .+. ++.+....
T Consensus 473 L~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCy-ALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 473 LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred ecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhh-hhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC
Confidence 346664 556655556677772 222221111 011234 678889999877776666788888 665 33332222
Q ss_pred CCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-cc-ccccceEEEcCCCCE
Q 026118 89 NGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DG-LYFANGVALSEDERF 165 (243)
Q Consensus 89 ~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~-~~~~~gi~~~~dg~~ 165 (243)
....+|.+.+||. ||-+. ..+.|-+.|...++ .+. .+ .....++-..|.+.|
T Consensus 552 -----DGascIdis~dGtklWTGG------------------lDntvRcWDlregr--qlqqhdF~SQIfSLg~cP~~dW 606 (705)
T KOG0639|consen 552 -----DGASCIDISKDGTKLWTGG------------------LDNTVRCWDLREGR--QLQQHDFSSQIFSLGYCPTGDW 606 (705)
T ss_pred -----CCceeEEecCCCceeecCC------------------Cccceeehhhhhhh--hhhhhhhhhhheecccCCCccc
Confidence 3456888889995 88762 34577788876442 222 11 123445667799998
Q ss_pred EEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118 166 LVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK 217 (243)
Q Consensus 166 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 217 (243)
|.|. +.++.++.....+. .+++. . ....-.-.+.+..-|..||++..
T Consensus 607 lavG-Mens~vevlh~skp--~kyql-h-lheScVLSlKFa~cGkwfvStGk 653 (705)
T KOG0639|consen 607 LAVG-MENSNVEVLHTSKP--EKYQL-H-LHESCVLSLKFAYCGKWFVSTGK 653 (705)
T ss_pred eeee-cccCcEEEEecCCc--cceee-c-ccccEEEEEEecccCceeeecCc
Confidence 8877 66777888776542 11111 0 00001123666777777777643
No 131
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.30 E-value=0.0092 Score=52.99 Aligned_cols=148 Identities=11% Similarity=0.112 Sum_probs=89.2
Q ss_pred cEEEcC-CCcEEEEe-CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcE-E----E
Q 026118 14 DVSVDG-NGVLYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVT-V----L 84 (243)
Q Consensus 14 ~i~~d~-~g~l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~-~----~ 84 (243)
||+|.| |.+.+++. -|++|..|+ ++.++..|........ .+.+.|||+...|++. .|.+++- ..+.+ + +
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT-Avcy~PdGk~avIGt~-~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLIT-AVCYSPDGKGAVIGTF-NGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhe-eEEeccCCceEEEEEe-ccEEEEEEccCCeEEEeeeE
Confidence 578887 55666554 789999999 7888888765433334 8899999998677775 5666554 44411 1 1
Q ss_pred Eecc-CCCcccCCccEEEcCC--CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc---ccccceEE
Q 026118 85 VSQF-NGSQLRFANDVIEASD--GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG---LYFANGVA 158 (243)
Q Consensus 85 ~~~~-~~~~~~~~~~l~~d~~--G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~---~~~~~gi~ 158 (243)
.... .......+.|+.+.|. .++.|+... .+|-.||.....+..-..+ ........
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnD------------------SrIRI~d~~~~~lv~KfKG~~n~~SQ~~As 553 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSND------------------SRIRIYDGRDKDLVHKFKGFRNTSSQISAS 553 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecCC------------------CceEEEeccchhhhhhhcccccCCcceeee
Confidence 1110 0111123556655542 258887533 4677777643332221222 12234567
Q ss_pred EcCCCCEEEEEEcCCCeEEEEEee
Q 026118 159 LSEDERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 159 ~~~dg~~l~v~~~~~~~i~~~~~~ 182 (243)
|+.||+++..+. .+..||.++.+
T Consensus 554 fs~Dgk~IVs~s-eDs~VYiW~~~ 576 (712)
T KOG0283|consen 554 FSSDGKHIVSAS-EDSWVYIWKND 576 (712)
T ss_pred EccCCCEEEEee-cCceEEEEeCC
Confidence 888999887775 67899999874
No 132
>PTZ00421 coronin; Provisional
Probab=97.26 E-value=0.11 Score=45.31 Aligned_cols=155 Identities=13% Similarity=0.050 Sum_probs=84.8
Q ss_pred cccEEEcCCC-c-EEEEeCCCcEEEEc-cCCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-c-EEE
Q 026118 12 PEDVSVDGNG-V-LYTATGDGWIKRMH-PNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-V-TVL 84 (243)
Q Consensus 12 p~~i~~d~~g-~-l~~~~~~~~i~~~~-~~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~-~~~ 84 (243)
..++++.+++ . |..+..++.|..+| ..++.. .+........ +++++++|++|..+..++.|..+| .++ . ..+
T Consensus 128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~-sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl 206 (493)
T PTZ00421 128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT-SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV 206 (493)
T ss_pred EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE-EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE
Confidence 4467888754 3 55556788899998 344432 2221112234 889999999855555444566777 555 2 222
Q ss_pred EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE-Eee--ccccccceEEEcC
Q 026118 85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS-LVL--DGLYFANGVALSE 161 (243)
Q Consensus 85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~-~~~--~~~~~~~gi~~~~ 161 (243)
... . ......+.+.+++..+++... .....+.|..+|..+.... ... ..........+++
T Consensus 207 ~~H-~---~~~~~~~~w~~~~~~ivt~G~-------------s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~ 269 (493)
T PTZ00421 207 EAH-A---SAKSQRCLWAKRKDLIITLGC-------------SKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDE 269 (493)
T ss_pred ecC-C---CCcceEEEEcCCCCeEEEEec-------------CCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcC
Confidence 111 1 111223455666665555311 0012345777776533211 111 1111222356889
Q ss_pred CCCEEEEEEcCCCeEEEEEeecC
Q 026118 162 DERFLVVCESWKFRCVKHFLKVS 184 (243)
Q Consensus 162 dg~~l~v~~~~~~~i~~~~~~~~ 184 (243)
+++.||++...++.|..|++..+
T Consensus 270 d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 270 DTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred CCCEEEEEEeCCCeEEEEEeeCC
Confidence 99988887666788999998764
No 133
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.26 E-value=0.034 Score=46.04 Aligned_cols=150 Identities=10% Similarity=0.048 Sum_probs=86.4
Q ss_pred ccEEEcCCCcEEEEe-CCCcEEEEcc-CCc-eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEecCC-cEEEEecc
Q 026118 13 EDVSVDGNGVLYTAT-GDGWIKRMHP-NGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVLVSQF 88 (243)
Q Consensus 13 ~~i~~d~~g~l~~~~-~~~~i~~~~~-~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g-~~~~~~~~ 88 (243)
..|.+.||.+-.++. .+.-+..+|. .|. ...+....+....+.+-.|||..+.++..+.+++.++.+| .. ...
T Consensus 273 ~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~---~~W 349 (519)
T KOG0293|consen 273 SYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL---GNW 349 (519)
T ss_pred EEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh---hcc
Confidence 346677766544433 4455667772 332 2223322223333677789998734444456788888555 21 112
Q ss_pred CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEE
Q 026118 89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVV 168 (243)
Q Consensus 89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v 168 (243)
.+.....+.+|++.+||...++.. ....+..|+..+..-+.+........++.++.|++ +..
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v~-----------------~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k-~~L 411 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLVT-----------------VDKKIRLYNREARVDRGLISEEQPITSFSISKDGK-LAL 411 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEEe-----------------cccceeeechhhhhhhccccccCceeEEEEcCCCc-EEE
Confidence 333334577899999997443311 12245556665332222333344557789999999 555
Q ss_pred EEcCCCeEEEEEeec
Q 026118 169 CESWKFRCVKHFLKV 183 (243)
Q Consensus 169 ~~~~~~~i~~~~~~~ 183 (243)
.+-..+.+..+|+..
T Consensus 412 vnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 412 VNLQDQEIHLWDLEE 426 (519)
T ss_pred EEcccCeeEEeecch
Confidence 666788999999874
No 134
>PTZ00420 coronin; Provisional
Probab=97.24 E-value=0.13 Score=45.63 Aligned_cols=157 Identities=6% Similarity=-0.016 Sum_probs=78.9
Q ss_pred cccEEEcCCCc-EE-EEeCCCcEEEEcc-CCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-c-EEE
Q 026118 12 PEDVSVDGNGV-LY-TATGDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-V-TVL 84 (243)
Q Consensus 12 p~~i~~d~~g~-l~-~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~-~~~ 84 (243)
-.++++.+++. +. .+..++.|..+|. .++.. .+. ...... ++.++++|.+|.++..++.+..+| .++ . ..+
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~-SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLS-SLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEE-EEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 45688888775 43 3457888999983 44422 222 122334 889999999843333344577777 555 2 222
Q ss_pred EeccCCCc-ccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCC-CeeEEeeccccccce--EEEc
Q 026118 85 VSQFNGSQ-LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-NQTSLVLDGLYFANG--VALS 160 (243)
Q Consensus 85 ~~~~~~~~-~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~-~~~~~~~~~~~~~~g--i~~~ 160 (243)
.. ..+.. ........+.+++..+++.... ......|..+|..+ .+..........+.. ..++
T Consensus 206 ~g-H~g~~~s~~v~~~~fs~d~~~IlTtG~d-------------~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D 271 (568)
T PTZ00420 206 HI-HDGGKNTKNIWIDGLGGDDNYILSTGFS-------------KNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYD 271 (568)
T ss_pred ec-ccCCceeEEEEeeeEcCCCCEEEEEEcC-------------CCCccEEEEEECCCCCCceEEEEecCCccceEEeee
Confidence 11 11110 0001111223677766664220 00112466666652 222221111111111 2344
Q ss_pred CCCCEEEEEEcCCCeEEEEEeecC
Q 026118 161 EDERFLVVCESWKFRCVKHFLKVS 184 (243)
Q Consensus 161 ~dg~~l~v~~~~~~~i~~~~~~~~ 184 (243)
++...+|++..+++.|..|++..+
T Consensus 272 ~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 272 ESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCCCCEEEEEECCCeEEEEEccCC
Confidence 543348888778899999988654
No 135
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.21 E-value=0.027 Score=46.19 Aligned_cols=98 Identities=23% Similarity=0.186 Sum_probs=62.5
Q ss_pred cCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccceEEEcCCCCEEEEEEcC
Q 026118 94 RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERFLVVCESW 172 (243)
Q Consensus 94 ~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~ 172 (243)
..++.+.++|||++..+-+- ...|-..+..+|+...... .......++++.|.+ |.|+...
T Consensus 368 ~lVn~V~fSPd~r~IASaSF-----------------DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~Sk 429 (480)
T KOG0271|consen 368 ALVNHVSFSPDGRYIASASF-----------------DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSK 429 (480)
T ss_pred hheeeEEECCCccEEEEeec-----------------ccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcCC
Confidence 46788999999976665321 1234445666676543332 345567899999999 8888888
Q ss_pred CCeEEEEEeecCCCcceEEeccCCCCCCCc---eEECCCCCEEEEE
Q 026118 173 KFRCVKHFLKVSGRTDREIFIDNLPGGPDN---VNLARDGSFWISI 215 (243)
Q Consensus 173 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~d~~G~lwv~~ 215 (243)
+..|-.+++...++ ...++|.-+. +...+||...++.
T Consensus 430 DsTLKvw~V~tkKl------~~DLpGh~DEVf~vDwspDG~rV~sg 469 (480)
T KOG0271|consen 430 DSTLKVWDVRTKKL------KQDLPGHADEVFAVDWSPDGQRVASG 469 (480)
T ss_pred CceEEEEEeeeeee------cccCCCCCceEEEEEecCCCceeecC
Confidence 88888888765322 2234444333 4445788766654
No 136
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.17 E-value=0.05 Score=46.23 Aligned_cols=144 Identities=13% Similarity=0.028 Sum_probs=79.8
Q ss_pred cccEEEcCCCcEEEEeCCCcEEEEccCCceeEe--cccCCccccceEEccCCCEEEEEeCCCcEEEEecCCcEEEEe--c
Q 026118 12 PEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDW--HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVS--Q 87 (243)
Q Consensus 12 p~~i~~d~~g~l~~~~~~~~i~~~~~~g~~~~~--~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g~~~~~~--~ 87 (243)
-.++++.++|.+..++.+|.|..+++.+..... ....+... ++..-.+|.+ ..+..+..|..++. ..+.+.. .
T Consensus 249 Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~-~L~~lr~Gtl-lSGgKDRki~~Wd~-~y~k~r~~el 325 (626)
T KOG2106|consen 249 VLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVF-SLCMLRDGTL-LSGGKDRKIILWDD-NYRKLRETEL 325 (626)
T ss_pred EEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceE-EEEEecCccE-eecCccceEEeccc-cccccccccC
Confidence 457888899999999988999999865432211 12223334 6777788988 44443345677762 1222211 1
Q ss_pred cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEE
Q 026118 88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLV 167 (243)
Q Consensus 88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~ 167 (243)
++ ....+.-++.. .+.++++++. +.|+.=+.+++-...+......-=|++.+|..+ +|
T Consensus 326 Pe--~~G~iRtv~e~-~~di~vGTtr------------------N~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~ 383 (626)
T KOG2106|consen 326 PE--QFGPIRTVAEG-KGDILVGTTR------------------NFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QL 383 (626)
T ss_pred ch--hcCCeeEEecC-CCcEEEeecc------------------ceEEEeeecCCceEEEEecccceeeEEcCCChh-he
Confidence 11 12234344433 3459998754 456655544332222222122334788888777 66
Q ss_pred EEEcCCCeEEEEE
Q 026118 168 VCESWKFRCVKHF 180 (243)
Q Consensus 168 v~~~~~~~i~~~~ 180 (243)
++...+..+..++
T Consensus 384 ~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 384 LTCGQDKHVRLWN 396 (626)
T ss_pred eeccCcceEEEcc
Confidence 6655566666666
No 137
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.16 E-value=0.077 Score=41.47 Aligned_cols=146 Identities=11% Similarity=0.094 Sum_probs=80.1
Q ss_pred CcccEEEcCCC-cEEEE-eCCCcEEEEc-cCCc-eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEE
Q 026118 11 HPEDVSVDGNG-VLYTA-TGDGWIKRMH-PNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLV 85 (243)
Q Consensus 11 ~p~~i~~d~~g-~l~~~-~~~~~i~~~~-~~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~ 85 (243)
.-+.++.++.. .++++ ..+..|.+++ ..++ ....... ..-. .+...|+|....+++...-|..+| .+- +...
T Consensus 66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~-~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~-~~~~ 142 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK-GENI-NITWSPDGEYIAVGNKDDRITFIDARTY-KIVN 142 (313)
T ss_pred chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc-Ccce-EEEEcCCCCEEEEecCcccEEEEEeccc-ceee
Confidence 45667888633 45544 4677788888 3333 2222221 1223 577889998845555556677777 332 1111
Q ss_pred eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccc---cceEEEcCC
Q 026118 86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF---ANGVALSED 162 (243)
Q Consensus 86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~---~~gi~~~~d 162 (243)
. .+ . .-..+.+...-++++||.+.+ .|.|-.+.-. +++++..-..+ .-.|.|+|+
T Consensus 143 ~-~~-~-~~e~ne~~w~~~nd~Fflt~G-----------------lG~v~ILsyp--sLkpv~si~AH~snCicI~f~p~ 200 (313)
T KOG1407|consen 143 E-EQ-F-KFEVNEISWNNSNDLFFLTNG-----------------LGCVEILSYP--SLKPVQSIKAHPSNCICIEFDPD 200 (313)
T ss_pred h-hc-c-cceeeeeeecCCCCEEEEecC-----------------CceEEEEecc--ccccccccccCCcceEEEEECCC
Confidence 1 11 0 123445566667888887654 2344333322 34444322222 335899999
Q ss_pred CCEEEEEEcCCCeEEEEEee
Q 026118 163 ERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 163 g~~l~v~~~~~~~i~~~~~~ 182 (243)
|+++-+.. .+..+..+|++
T Consensus 201 GryfA~Gs-ADAlvSLWD~~ 219 (313)
T KOG1407|consen 201 GRYFATGS-ADALVSLWDVD 219 (313)
T ss_pred CceEeecc-ccceeeccChh
Confidence 99777664 45666667765
No 138
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.16 E-value=0.064 Score=45.83 Aligned_cols=109 Identities=16% Similarity=0.046 Sum_probs=64.8
Q ss_pred ceEEccCCCEEEEEeCCC---cEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccc
Q 026118 54 GLTTTKENNVIIVCDSQQ---GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVS 127 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~~~~---gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~ 127 (243)
...++|||+.+.++.... .|+.+| ..+ ...+-. ..+. ...| .+.|||+ ++++.+.
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~-~~gi-~~~P---s~spdG~~ivf~Sdr-------------- 302 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN-GFGI-NTSP---SWSPDGSKIVFTSDR-------------- 302 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceeccc-CCcc-ccCc---cCCCCCCEEEEEeCC--------------
Confidence 567889998755554433 488888 444 332221 1111 1122 5678987 4444332
Q ss_pred cCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCe--EEEEEee
Q 026118 128 GEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFR--CVKHFLK 182 (243)
Q Consensus 128 ~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~--i~~~~~~ 182 (243)
...-.||+++++++..+++........-..++|||+++.+.....+. |..+++.
T Consensus 303 -~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 303 -GGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred -CCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence 12237999999988887776544444456889999988777643333 5555543
No 139
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.15 E-value=0.033 Score=46.76 Aligned_cols=131 Identities=17% Similarity=0.195 Sum_probs=73.8
Q ss_pred CCcEEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEe-ccCCCcccCC
Q 026118 20 NGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVS-QFNGSQLRFA 96 (243)
Q Consensus 20 ~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~-~~~~~~~~~~ 96 (243)
++.+|++..++.++.++ .+|+.. |........ .++++ ++++ |+++..+.++.++ .+|...... .........|
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~-W~~~~~~~~-~p~~~-~~~v-yv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp 316 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVL-WKRDASSYQ-GPAVD-DNRL-YVTDADGVVVALDRRSGSELWKNDELKYRQLTAP 316 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEE-EeeccCCcc-CceEe-CCEE-EEECCCCeEEEEECCCCcEEEccccccCCccccC
Confidence 56889888888999999 466543 322212222 34442 3455 8888666799999 677222211 1111111122
Q ss_pred ccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec--cccccceEEEcCCCCEEEEEEcCCC
Q 026118 97 NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--GLYFANGVALSEDERFLVVCESWKF 174 (243)
Q Consensus 97 ~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~--~~~~~~gi~~~~dg~~l~v~~~~~~ 174 (243)
++ .++.+|+++. .+.|+.+|+++|+...-.. ........++. +++ ||+... ++
T Consensus 317 ---~i-~g~~l~~~~~------------------~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~~-l~v~~~-dG 371 (377)
T TIGR03300 317 ---AV-VGGYLVVGDF------------------EGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GDG-LLVQTR-DG 371 (377)
T ss_pred ---EE-ECCEEEEEeC------------------CCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CCE-EEEEeC-Cc
Confidence 33 2467888753 3689999998887654322 11122223332 454 998864 56
Q ss_pred eEEEE
Q 026118 175 RCVKH 179 (243)
Q Consensus 175 ~i~~~ 179 (243)
.|+.|
T Consensus 372 ~l~~~ 376 (377)
T TIGR03300 372 DLYAF 376 (377)
T ss_pred eEEEe
Confidence 77765
No 140
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.14 E-value=0.0045 Score=40.41 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=43.1
Q ss_pred cEEEcCC-CcEEEEeC------------------CCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCC-Cc
Q 026118 14 DVSVDGN-GVLYTATG------------------DGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QG 72 (243)
Q Consensus 14 ~i~~d~~-g~l~~~~~------------------~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~g 72 (243)
.++++++ |.+|+++. .|+++++|+ +++.+........|+ |+++++|+..++|+... ..
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpN-GVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPN-GVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEE-EEEE-TTSSEEEEEEGGGTE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccC-eEEEcCCCCEEEEEeccCce
Confidence 5788887 89999862 378999996 455666666566789 99999999976777643 45
Q ss_pred EEEEe
Q 026118 73 LLKVS 77 (243)
Q Consensus 73 l~~~~ 77 (243)
|.++.
T Consensus 81 i~ryw 85 (89)
T PF03088_consen 81 ILRYW 85 (89)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77665
No 141
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.13 E-value=0.02 Score=50.73 Aligned_cols=108 Identities=9% Similarity=0.036 Sum_probs=70.4
Q ss_pred ceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCC
Q 026118 54 GLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPH 131 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~ 131 (243)
++.|.|+.+++..+..+.-+-.+| .+| ...+.. | ....+..|+++|+|+...+- ...
T Consensus 540 cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~---G-H~~~V~al~~Sp~Gr~LaSg-----------------~ed 598 (707)
T KOG0263|consen 540 CVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT---G-HKGPVTALAFSPCGRYLASG-----------------DED 598 (707)
T ss_pred eEEECCcccccccCCCCceEEEEEcCCCcEEEEec---C-CCCceEEEEEcCCCceEeec-----------------ccC
Confidence 688999988622222223355666 667 333332 2 23456789999999876652 234
Q ss_pred ceEEEEeCCCCeeEEe-eccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118 132 GVLLKYDPSTNQTSLV-LDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 132 g~v~~~~~~~~~~~~~-~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
+.|..+|..++++-.. ........+|.|+.||+ +.++...+++|..+|+..
T Consensus 599 ~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 599 GLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTK 650 (707)
T ss_pred CcEEEEEcCCCcchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchh
Confidence 5677788876654332 23345667899999999 666667789999998764
No 142
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.12 E-value=0.054 Score=47.29 Aligned_cols=115 Identities=15% Similarity=0.106 Sum_probs=61.7
Q ss_pred CCcEEEEeCCCcEEEEc-cCCceeEecccCCc-----c---ccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEecc
Q 026118 20 NGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQ-----S---LLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQF 88 (243)
Q Consensus 20 ~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~-----~---~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~ 88 (243)
+|++|+++.++.|+.+| .+|+...-...... + ..++++..++++ |+++....|+.+| .+| ...... .
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V-~v~~~~g~v~AlD~~TG~~~W~~~-~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKV-FFGTFDGRLVALDAETGKQVWKFG-N 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeE-EEecCCCeEEEEECCCCCEeeeec-C
Confidence 77899998889999999 46654422111010 0 102233222566 8888777899999 778 333222 1
Q ss_pred CCCc---ccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE
Q 026118 89 NGSQ---LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL 146 (243)
Q Consensus 89 ~~~~---~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~ 146 (243)
.... ........+. ++.+|++.....+. .....+.|+.+|.++|+...
T Consensus 139 ~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~---------~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 139 NDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFF---------ACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CCCcCcceEecCCCEEE-CCEEEEeccccccc---------cCCCCcEEEEEECCCCceee
Confidence 1110 0001122333 36777765331110 00124689999999887654
No 143
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.12 E-value=0.11 Score=42.32 Aligned_cols=180 Identities=16% Similarity=0.167 Sum_probs=82.6
Q ss_pred CCcccEEEcCCCcEEEEeCCCcEEEEccCC-ceeEecccCCcc----ccceEEccCCCEEEEEeCCCcEEEEe-cCC--c
Q 026118 10 NHPEDVSVDGNGVLYTATGDGWIKRMHPNG-TWEDWHQVGSQS----LLGLTTTKENNVIIVCDSQQGLLKVS-EEG--V 81 (243)
Q Consensus 10 ~~p~~i~~d~~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~~~~----~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~ 81 (243)
.....|++..+.+-|+....+.|++-...| ++.........+ ...+.+.. .+. |++.. .+++... +.| .
T Consensus 17 ~~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g-~ivG~-~g~ll~T~DgG~tW 93 (302)
T PF14870_consen 17 KPLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEG-WIVGE-PGLLLHTTDGGKTW 93 (302)
T ss_dssp S-EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEEEEEEET-TEE-EEEEE-TTEEEEESSTTSS-
T ss_pred CceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEEEEEecC-Cce-EEEcC-CceEEEecCCCCCc
Confidence 355678887666777665667777775333 355443221221 22555543 355 77654 4554444 444 4
Q ss_pred EEEEe--ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEE
Q 026118 82 TVLVS--QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVA 158 (243)
Q Consensus 82 ~~~~~--~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~ 158 (243)
+.+.. ..++ .+..+....++.++++.. .+.||+=.-.+...+.+. ......+.+.
T Consensus 94 ~~v~l~~~lpg----s~~~i~~l~~~~~~l~~~------------------~G~iy~T~DgG~tW~~~~~~~~gs~~~~~ 151 (302)
T PF14870_consen 94 ERVPLSSKLPG----SPFGITALGDGSAELAGD------------------RGAIYRTTDGGKTWQAVVSETSGSINDIT 151 (302)
T ss_dssp EE----TT-SS-----EEEEEEEETTEEEEEET------------------T--EEEESSTTSSEEEEE-S----EEEEE
T ss_pred EEeecCCCCCC----CeeEEEEcCCCcEEEEcC------------------CCcEEEeCCCCCCeeEcccCCcceeEeEE
Confidence 44332 1121 233455445566666532 357877555544555543 2234456677
Q ss_pred EcCCCCEEEEEEcCCCeEEE-EEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118 159 LSEDERFLVVCESWKFRCVK-HFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD 219 (243)
Q Consensus 159 ~~~dg~~l~v~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~ 219 (243)
.++||+++.|+. .+.++. .+. + ....+........+..+|.++++|+||+.+..+.
T Consensus 152 r~~dG~~vavs~--~G~~~~s~~~-G--~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~ 208 (302)
T PF14870_consen 152 RSSDGRYVAVSS--RGNFYSSWDP-G--QTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQ 208 (302)
T ss_dssp E-TTS-EEEEET--TSSEEEEE-T-T---SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTE
T ss_pred ECCCCcEEEEEC--cccEEEEecC-C--CccceEEccCccceehhceecCCCCEEEEeCCcE
Confidence 789998666653 355553 232 1 1222222222234567799999999999875443
No 144
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.035 Score=45.83 Aligned_cols=177 Identities=13% Similarity=0.091 Sum_probs=87.9
Q ss_pred ccEEEcCCCcEE-EEeCCCcEEEEc-cCCce-eEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEecc
Q 026118 13 EDVSVDGNGVLY-TATGDGWIKRMH-PNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQF 88 (243)
Q Consensus 13 ~~i~~d~~g~l~-~~~~~~~i~~~~-~~g~~-~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~~ 88 (243)
..+++..+|.+. ++..+|.++.++ |.-.. ........... .|.|++||++ .+.........++ .+|...-...+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~-DL~FS~dgk~-lasig~d~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVK-DLDFSPDGKF-LASIGADSARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccc-cceeCCCCcE-EEEecCCceEEEEeccCchhhhcCC
Confidence 456677776554 344666666666 54332 22222223445 8999999988 4544445666666 66621111111
Q ss_pred CCCcccCCccEEEcCCC---cEEEEeCCCCCCcccccccccccCCCceE--EEEeCCCC----eeEEeeccccccceEEE
Q 026118 89 NGSQLRFANDVIEASDG---SLYFTVSSTKFTPAEYYLDLVSGEPHGVL--LKYDPSTN----QTSLVLDGLYFANGVAL 159 (243)
Q Consensus 89 ~~~~~~~~~~l~~d~~G---~l~v~~~~~~~~~~~~~~~~~~~~~~g~v--~~~~~~~~----~~~~~~~~~~~~~gi~~ 159 (243)
.... .....+.+..|+ .+++++... ..++| +++..-.+ +.+...........|++
T Consensus 226 ~~k~-~~~~~cRF~~d~~~~~l~laa~~~---------------~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 226 FSKD-EMFSSCRFSVDNAQETLRLAASQF---------------PGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV 289 (398)
T ss_pred cccc-hhhhhceecccCCCceEEEEEecC---------------CCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence 1111 112223444333 567665431 11222 22221111 22223333446678999
Q ss_pred cCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118 160 SEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS 210 (243)
Q Consensus 160 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~ 210 (243)
+.+|+++-++.. ++.|..|+... +...+.+..--.+...++.+.|+-+
T Consensus 290 S~dGkf~AlGT~-dGsVai~~~~~--lq~~~~vk~aH~~~VT~ltF~Pdsr 337 (398)
T KOG0771|consen 290 SDDGKFLALGTM-DGSVAIYDAKS--LQRLQYVKEAHLGFVTGLTFSPDSR 337 (398)
T ss_pred cCCCcEEEEecc-CCcEEEEEece--eeeeEeehhhheeeeeeEEEcCCcC
Confidence 999997777754 78888887542 2222332221122344555555543
No 145
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.11 E-value=0.19 Score=46.72 Aligned_cols=149 Identities=13% Similarity=0.027 Sum_probs=82.7
Q ss_pred cccEEEcCCCcEE-EEeCCCcEEEEccCC-----cee---EecccCCccccceEEcc-CCCEEEEEeCCCcEEEEe-cCC
Q 026118 12 PEDVSVDGNGVLY-TATGDGWIKRMHPNG-----TWE---DWHQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVS-EEG 80 (243)
Q Consensus 12 p~~i~~d~~g~l~-~~~~~~~i~~~~~~g-----~~~---~~~~~~~~~~~~i~~~~-~g~l~~v~~~~~gl~~~~-~~g 80 (243)
-.+++++++|.+. ++..++.|..++... ... ...........++++++ +++++..+..++-+..+| .++
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~ 565 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS 565 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC
Confidence 3458889988755 455788888887321 110 00011111222667765 355635555444456667 555
Q ss_pred -c-EEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceE
Q 026118 81 -V-TVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGV 157 (243)
Q Consensus 81 -~-~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi 157 (243)
. ..+. + ....+.++++++ ++.++++.+. .+.|..+|..++..............+
T Consensus 566 ~~~~~~~----~-H~~~V~~l~~~p~~~~~L~Sgs~-----------------Dg~v~iWd~~~~~~~~~~~~~~~v~~v 623 (793)
T PLN00181 566 QLVTEMK----E-HEKRVWSIDYSSADPTLLASGSD-----------------DGSVKLWSINQGVSIGTIKTKANICCV 623 (793)
T ss_pred eEEEEec----C-CCCCEEEEEEcCCCCCEEEEEcC-----------------CCEEEEEECCCCcEEEEEecCCCeEEE
Confidence 2 2221 1 123567888986 7777776432 356777777655443322222334567
Q ss_pred EEc-CCCCEEEEEEcCCCeEEEEEeec
Q 026118 158 ALS-EDERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 158 ~~~-~dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
.++ ++++.+. +...++.|..||...
T Consensus 624 ~~~~~~g~~la-tgs~dg~I~iwD~~~ 649 (793)
T PLN00181 624 QFPSESGRSLA-FGSADHKVYYYDLRN 649 (793)
T ss_pred EEeCCCCCEEE-EEeCCCeEEEEECCC
Confidence 774 4677444 445678999999864
No 146
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.10 E-value=0.067 Score=40.57 Aligned_cols=99 Identities=15% Similarity=0.111 Sum_probs=60.8
Q ss_pred CccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC--C
Q 026118 96 ANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW--K 173 (243)
Q Consensus 96 ~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~ 173 (243)
+.+++.+|+|+-++...+ .....+..||.+...+..+. ....+.|.++|+|++|.++... .
T Consensus 62 I~~~~WsP~g~~favi~g---------------~~~~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~ 124 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYG---------------SMPAKVTLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLN 124 (194)
T ss_pred eEEEEECcCCCEEEEEEc---------------cCCcccEEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCC
Confidence 678899999975543211 11235666777633333332 3455789999999988887643 3
Q ss_pred CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118 174 FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII 216 (243)
Q Consensus 174 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~ 216 (243)
+.|..+|.+. .+.+..........++.+++|+..+...
T Consensus 125 G~l~~wd~~~-----~~~i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 125 GDLEFWDVRK-----KKKISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred cEEEEEECCC-----CEEeeccccCcEEEEEEcCCCCEEEEEE
Confidence 5688888763 2222222222356689999999666543
No 147
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.09 E-value=0.05 Score=47.92 Aligned_cols=153 Identities=12% Similarity=0.066 Sum_probs=84.6
Q ss_pred CCcEEEEeCCCcEEEEc-cCCceeEecccC----Ccc-------ccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118 20 NGVLYTATGDGWIKRMH-PNGTWEDWHQVG----SQS-------LLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLV 85 (243)
Q Consensus 20 ~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~----~~~-------~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~ 85 (243)
+|.||+++..+.|+.+| .+|+..-..... ..+ ..++++. ++++ |+++....|+.+| .+| ...-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v-~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKV-FFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CCEE-EEEcCCCEEEEEECCCCCEEeec
Confidence 68999998888899999 567644221110 000 1133442 3566 8888777899999 788 33221
Q ss_pred eccCCC-cccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc-------------
Q 026118 86 SQFNGS-QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL------------- 151 (243)
Q Consensus 86 ~~~~~~-~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~------------- 151 (243)
...... ........++ .+|.++++.+...+ ...+.|+.+|.++|+...-....
T Consensus 147 ~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~------------~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~ 213 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLV-VKGKVITGISGGEF------------GVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKP 213 (527)
T ss_pred ccccccccccccCCcEE-ECCEEEEeeccccc------------CCCcEEEEEECCCCceeEeccCcCCCcccccccccc
Confidence 111100 0000111122 25688887543211 13467888888888755321110
Q ss_pred --------------------cccceEEEcCCCCEEEEEEcC---------------CCeEEEEEeecCCCc
Q 026118 152 --------------------YFANGVALSEDERFLVVCESW---------------KFRCVKHFLKVSGRT 187 (243)
Q Consensus 152 --------------------~~~~gi~~~~dg~~l~v~~~~---------------~~~i~~~~~~~~~~~ 187 (243)
..-..+++|++.+.+|+.... .++|..+|.+++++.
T Consensus 214 ~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~ 284 (527)
T TIGR03075 214 VGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIK 284 (527)
T ss_pred cccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEE
Confidence 001246889888889987521 237888888765443
No 148
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.08 E-value=0.034 Score=46.10 Aligned_cols=141 Identities=11% Similarity=0.092 Sum_probs=77.6
Q ss_pred ccceEEccCCCEEEEEeCCCcEE-EEe-cCCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccC
Q 026118 52 LLGLTTTKENNVIIVCDSQQGLL-KVS-EEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGE 129 (243)
Q Consensus 52 ~~~i~~~~~g~l~~v~~~~~gl~-~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~ 129 (243)
+.++++.+||.+ ..+..-..+- .+| .+|...+. .++ ..-.+.+|.++|.|....+.++.
T Consensus 306 v~~iaf~~DGSL-~~tGGlD~~~RvWDlRtgr~im~--L~g-H~k~I~~V~fsPNGy~lATgs~D--------------- 366 (459)
T KOG0272|consen 306 VFSIAFQPDGSL-AATGGLDSLGRVWDLRTGRCIMF--LAG-HIKEILSVAFSPNGYHLATGSSD--------------- 366 (459)
T ss_pred cceeEecCCCce-eeccCccchhheeecccCcEEEE--ecc-cccceeeEeECCCceEEeecCCC---------------
Confidence 448999999998 3333223443 445 67733322 122 22356789999999887775431
Q ss_pred CCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCC
Q 026118 130 PHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDG 209 (243)
Q Consensus 130 ~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G 209 (243)
..-+||.+... ..+-.++........+.++|+..+..++...++.+-.+...+-. -.+.+. +-.+..-++.+.++|
T Consensus 367 nt~kVWDLR~r-~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~--~~ksLa-GHe~kV~s~Dis~d~ 442 (459)
T KOG0272|consen 367 NTCKVWDLRMR-SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS--PLKSLA-GHEGKVISLDISPDS 442 (459)
T ss_pred CcEEEeeeccc-ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc--cchhhc-CCccceEEEEeccCC
Confidence 22356665543 22223333345567889998655566676777887777644311 111111 122234446666777
Q ss_pred CEEEEE
Q 026118 210 SFWISI 215 (243)
Q Consensus 210 ~lwv~~ 215 (243)
...++.
T Consensus 443 ~~i~t~ 448 (459)
T KOG0272|consen 443 QAIATS 448 (459)
T ss_pred ceEEEe
Confidence 655543
No 149
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.07 E-value=0.11 Score=41.69 Aligned_cols=182 Identities=8% Similarity=0.013 Sum_probs=97.9
Q ss_pred cccEEEcCCCcEE-EEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEe
Q 026118 12 PEDVSVDGNGVLY-TATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVS 86 (243)
Q Consensus 12 p~~i~~d~~g~l~-~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~ 86 (243)
+.++.+.+.|.+. +|..+|+|..+| .+-.+.+.....-.|..+++-+++|++|..+..+..+..+| .+| ...+.-
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 6778888888654 666899999998 33333322222234655899999999866666666788888 677 333321
Q ss_pred ccCCCcccCCccEEEcCC-CcEEEEe-CCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--c-cccceEEEcC
Q 026118 87 QFNGSQLRFANDVIEASD-GSLYFTV-SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--L-YFANGVALSE 161 (243)
Q Consensus 87 ~~~~~~~~~~~~l~~d~~-G~l~v~~-~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~-~~~~gi~~~~ 161 (243)
. +.+.+....|. -+..++. +. ....|..+++....+-+...+ . ..+.--.+++
T Consensus 106 ~------spv~~~q~hp~k~n~~va~~~~----------------~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr 163 (405)
T KOG1273|consen 106 D------SPVWGAQWHPRKRNKCVATIME----------------ESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR 163 (405)
T ss_pred c------CccceeeeccccCCeEEEEEec----------------CCcEEEEecCCceeeccCCCccccccccccccccC
Confidence 1 11223344442 3444442 11 112333333211111111111 1 1122236899
Q ss_pred CCCEEEEEEcCCCeEEEEEeecCCCc-ceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118 162 DERFLVVCESWKFRCVKHFLKVSGRT-DREIFIDNLPGGPDNVNLARDGSFWISIIKMD 219 (243)
Q Consensus 162 dg~~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~ 219 (243)
.|+++|.++ ..+.+..|+...-... .+++. .......|.+...|+.++-+...+
T Consensus 164 ~g~yIitGt-sKGkllv~~a~t~e~vas~rit---s~~~IK~I~~s~~g~~liiNtsDR 218 (405)
T KOG1273|consen 164 RGKYIITGT-SKGKLLVYDAETLECVASFRIT---SVQAIKQIIVSRKGRFLIINTSDR 218 (405)
T ss_pred CCCEEEEec-CcceEEEEecchheeeeeeeec---hheeeeEEEEeccCcEEEEecCCc
Confidence 999888775 5789999987642111 11111 111244577788887655444433
No 150
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=97.06 E-value=0.06 Score=41.56 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=76.5
Q ss_pred eecccccCCcccEEEcCCCcEEEEeCCCcEEEEc--cCCc------eeEecccCCccccceEEccCCCEEEEEeCCCcEE
Q 026118 3 KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMH--PNGT------WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLL 74 (243)
Q Consensus 3 ~~~~g~~~~p~~i~~d~~g~l~~~~~~~~i~~~~--~~g~------~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~ 74 (243)
+++.| ..+-..|+..|+|+||....+ .+++.. ..+. -+.+....-.....|.+++.|.| |.......|+
T Consensus 28 ~iG~g-w~~~~~i~~~P~g~lY~I~~~-~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~~G~L-YaV~~~G~ly 104 (229)
T PF14517_consen 28 TIGSG-WNNFRDIAAGPNGRLYAIRND-GLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFDPTGVL-YAVTPDGKLY 104 (229)
T ss_dssp EEESS--TT-SEEEE-TTS-EEEEETT-EEEEES---STT--HHHH-EEEE-S-GGG-SEEEE-TTS-E-EEEETT-EEE
T ss_pred hcCcc-ccccceEEEcCCceEEEEECC-ceEEecCCccCcccccccCcccccCcccceeEEEecCCccE-EEecccccee
Confidence 45554 445556888899999988644 788773 1221 11222211122326888999988 9888766788
Q ss_pred EEe-c-CC-cEEE---EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEE-eCCCCeeE--
Q 026118 75 KVS-E-EG-VTVL---VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKY-DPSTNQTS-- 145 (243)
Q Consensus 75 ~~~-~-~g-~~~~---~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~-~~~~~~~~-- 145 (243)
+.. + ++ .... ....-...-+....|..+++|.||..+.. +.+++. .|+.+.-+
T Consensus 105 R~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~d------------------g~~~~~~~p~~~~~~W~ 166 (229)
T PF14517_consen 105 RHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPD------------------GRLYRRYRPDGGSDRWL 166 (229)
T ss_dssp EES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETT------------------E-EEEE---SSTT--HH
T ss_pred eccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcCC------------------CceEEeCCCCCCCCccc
Confidence 876 3 22 1111 11111111233456778899999988643 457776 44432211
Q ss_pred ---Ee--eccccccceEEEcCCCCEEEEEEcCCCeEEEEEe
Q 026118 146 ---LV--LDGLYFANGVALSEDERFLVVCESWKFRCVKHFL 181 (243)
Q Consensus 146 ---~~--~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~ 181 (243)
.+ ..+.....-|.++++|. ||.. ..++.|+++..
T Consensus 167 ~~s~~v~~~gw~~~~~i~~~~~g~-L~~V-~~~G~lyr~~~ 205 (229)
T PF14517_consen 167 SGSGLVGGGGWDSFHFIFFSPDGN-LWAV-KSNGKLYRGRP 205 (229)
T ss_dssp HH-EEEESSSGGGEEEEEE-TTS--EEEE--ETTEEEEES-
T ss_pred cccceeccCCcccceEEeeCCCCc-EEEE-ecCCEEeccCC
Confidence 11 12233456788899998 8888 45688987754
No 151
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.04 E-value=0.12 Score=44.97 Aligned_cols=127 Identities=11% Similarity=0.119 Sum_probs=74.1
Q ss_pred cccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCC-------eeEEeec-----c--------
Q 026118 92 QLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-------QTSLVLD-----G-------- 150 (243)
Q Consensus 92 ~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~-------~~~~~~~-----~-------- 150 (243)
++..|.++++.| .|++|++.....-... .....-.....|.|+++-+.++ ++..+.. .
T Consensus 415 ~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~-~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~ 493 (616)
T COG3211 415 PMDRPEWIAVNPGTGEVYFTLTNNGKRSD-DAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASAN 493 (616)
T ss_pred cccCccceeecCCcceEEEEeCCCCcccc-ccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccC
Confidence 355788899988 4789998643211100 0001111223478999988875 4544421 1
Q ss_pred -----ccccceEEEcCCCCEEEEEEcCCC--------eEEEEEeecCCCcceEEeccCCC-CCCCceEECCCCC-EEEEE
Q 026118 151 -----LYFANGVALSEDERFLVVCESWKF--------RCVKHFLKVSGRTDREIFIDNLP-GGPDNVNLARDGS-FWISI 215 (243)
Q Consensus 151 -----~~~~~gi~~~~dg~~l~v~~~~~~--------~i~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~-lwv~~ 215 (243)
...|.+|+|++.|+ ||+.+.... .++.+...++...+.+.+..... -...|.++.+||+ |+|+.
T Consensus 494 ~~~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~v 572 (616)
T COG3211 494 INANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNV 572 (616)
T ss_pred cccccccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEe
Confidence 12378999999999 999876433 23322333334455555543222 1356789999987 88887
Q ss_pred ecCCc
Q 026118 216 IKMDP 220 (243)
Q Consensus 216 ~~~~~ 220 (243)
..-+.
T Consensus 573 QHPGe 577 (616)
T COG3211 573 QHPGE 577 (616)
T ss_pred cCCCC
Confidence 65543
No 152
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.04 E-value=0.13 Score=41.85 Aligned_cols=142 Identities=10% Similarity=0.071 Sum_probs=65.5
Q ss_pred EEEcCCCcEEEEeCCCcEEEEccCC--ceeEecccC-CccccceEEccCCCEEEEEeCCCcEEEEec--CCcEEEEeccC
Q 026118 15 VSVDGNGVLYTATGDGWIKRMHPNG--TWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQQGLLKVSE--EGVTVLVSQFN 89 (243)
Q Consensus 15 i~~d~~g~l~~~~~~~~i~~~~~~g--~~~~~~~~~-~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~--~g~~~~~~~~~ 89 (243)
+...++|++.+....|.++.--..| .+..+.... .+.. .|.+++++.+ |+... +|.+++.+ +..........
T Consensus 150 ~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq-~~gf~~~~~l-w~~~~-Gg~~~~s~~~~~~~~w~~~~~ 226 (302)
T PF14870_consen 150 ITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQ-SMGFSPDGNL-WMLAR-GGQIQFSDDPDDGETWSEPII 226 (302)
T ss_dssp EEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EE-EEEE-TTS-E-EEEET-TTEEEEEE-TTEEEEE---B-
T ss_pred EEECCCCcEEEEECcccEEEEecCCCccceEEccCccceeh-hceecCCCCE-EEEeC-CcEEEEccCCCCccccccccC
Confidence 4444566655444555555332222 244443322 2334 8999999999 88874 56565552 32343333111
Q ss_pred CCcc--cCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecccc---ccceEEEcCCCC
Q 026118 90 GSQL--RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLY---FANGVALSEDER 164 (243)
Q Consensus 90 ~~~~--~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~---~~~gi~~~~dg~ 164 (243)
.... -..-+|+..+++.+|++.. ++.|++=.-.+...++...... ....|.|..+.+
T Consensus 227 ~~~~~~~~~ld~a~~~~~~~wa~gg------------------~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~ 288 (302)
T PF14870_consen 227 PIKTNGYGILDLAYRPPNEIWAVGG------------------SGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK 288 (302)
T ss_dssp TTSS--S-EEEEEESSSS-EEEEES------------------TT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTE
T ss_pred CcccCceeeEEEEecCCCCEEEEeC------------------CccEEEeCCCCccceECccccCCCCceEEEEEcCCCc
Confidence 1111 1245778888999999842 3456543333334554432222 235677766555
Q ss_pred EEEEEEcCCCeEEEE
Q 026118 165 FLVVCESWKFRCVKH 179 (243)
Q Consensus 165 ~l~v~~~~~~~i~~~ 179 (243)
-|+.. .++.|.||
T Consensus 289 -gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 289 -GFVLG-QDGVLLRY 301 (302)
T ss_dssp -EEEE--STTEEEEE
T ss_pred -eEEEC-CCcEEEEe
Confidence 56554 35777776
No 153
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.02 E-value=0.28 Score=45.59 Aligned_cols=177 Identities=11% Similarity=0.029 Sum_probs=93.5
Q ss_pred ccEEEcC-CC-cEEEEeCCCcEEEEc-cCCce-eEecccCCccccceEEcc-CCCEEEEEeCCCcEEEEe-cCC-c-EEE
Q 026118 13 EDVSVDG-NG-VLYTATGDGWIKRMH-PNGTW-EDWHQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVS-EEG-V-TVL 84 (243)
Q Consensus 13 ~~i~~d~-~g-~l~~~~~~~~i~~~~-~~g~~-~~~~~~~~~~~~~i~~~~-~g~l~~v~~~~~gl~~~~-~~g-~-~~~ 84 (243)
.++++.+ ++ .|..+..++.|..+| ..++. ..+........ ++++++ ++.+|+.+..++.+..++ .++ . ..+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~-~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW-SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE-EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 4566665 34 455566788899998 34433 22222222334 888985 677745555444566677 555 2 222
Q ss_pred EeccCCCcccCCccEEEc-CCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCee--EEeeccccccceEEEcC
Q 026118 85 VSQFNGSQLRFANDVIEA-SDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT--SLVLDGLYFANGVALSE 161 (243)
Q Consensus 85 ~~~~~~~~~~~~~~l~~d-~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~--~~~~~~~~~~~gi~~~~ 161 (243)
.. ...+.++.+. ++|.++++.+ ..+.|+.+|..+... ..+.........+.|.
T Consensus 615 ~~------~~~v~~v~~~~~~g~~latgs-----------------~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~- 670 (793)
T PLN00181 615 KT------KANICCVQFPSESGRSLAFGS-----------------ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV- 670 (793)
T ss_pred ec------CCCeEEEEEeCCCCCEEEEEe-----------------CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-
Confidence 11 1234456664 4677666532 346788888765431 2222222344567776
Q ss_pred CCCEEEEEEcCCCeEEEEEeecCCC----cceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118 162 DERFLVVCESWKFRCVKHFLKVSGR----TDREIFIDNLPGGPDNVNLARDGSFWISII 216 (243)
Q Consensus 162 dg~~l~v~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~ 216 (243)
++++++.+ ..++.|..|++..... .....+. ........++++++|.+.++..
T Consensus 671 ~~~~lvs~-s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs 727 (793)
T PLN00181 671 DSSTLVSS-STDNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGS 727 (793)
T ss_pred CCCEEEEE-ECCCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEe
Confidence 66645444 5678888888753210 1111221 1122334577777776544443
No 154
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.00 E-value=0.013 Score=49.66 Aligned_cols=111 Identities=13% Similarity=0.171 Sum_probs=69.7
Q ss_pred cccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE--ee-ccccccceEEEcCCCCEEEE
Q 026118 92 QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL--VL-DGLYFANGVALSEDERFLVV 168 (243)
Q Consensus 92 ~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~--~~-~~~~~~~gi~~~~dg~~l~v 168 (243)
+.+++......+||+-.++.- .-..|...|...-..+. .. ..-.....+++++|-+ +.+
T Consensus 464 rdnyiRSckL~pdgrtLivGG-----------------eastlsiWDLAapTprikaeltssapaCyALa~spDak-vcF 525 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGG-----------------EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK-VCF 525 (705)
T ss_pred cccceeeeEecCCCceEEecc-----------------ccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc-eee
Confidence 346777778889997444310 11235555655333221 11 1123345789999999 666
Q ss_pred EEcCCCeEEEEEeecCCCcceEEeccCCCCCCCc---eEECCCCC-EEEEEecCCchhhhhh
Q 026118 169 CESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDN---VNLARDGS-FWISIIKMDPKGIQAL 226 (243)
Q Consensus 169 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~d~~G~-lwv~~~~~~~~~~~~~ 226 (243)
+...++.|.+||+.+..+ .....|+++| |.+..+|. ||-+..++..++++.-
T Consensus 526 sccsdGnI~vwDLhnq~~------VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlr 581 (705)
T KOG0639|consen 526 SCCSDGNIAVWDLHNQTL------VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLR 581 (705)
T ss_pred eeccCCcEEEEEccccee------eecccCCCCCceeEEecCCCceeecCCCccceeehhhh
Confidence 667889999999876322 2234455555 78888995 9999988887777643
No 155
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.99 E-value=0.067 Score=44.64 Aligned_cols=147 Identities=13% Similarity=0.106 Sum_probs=72.7
Q ss_pred CCCcEEEEe-CCCcEEEEccCCceeEecccCCccccce--EEc--cCCC---EEEEEeCC---C--cEEEEe-cCC-cEE
Q 026118 19 GNGVLYTAT-GDGWIKRMHPNGTWEDWHQVGSQSLLGL--TTT--KENN---VIIVCDSQ---Q--GLLKVS-EEG-VTV 83 (243)
Q Consensus 19 ~~g~l~~~~-~~~~i~~~~~~g~~~~~~~~~~~~~~~i--~~~--~~g~---l~~v~~~~---~--gl~~~~-~~g-~~~ 83 (243)
+..-+++++ ..++++.++.+|+...... .++++ .+ ..+ -.|+ ++.+++.. . .+++++ .++ .+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~-~Gr~N-NVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSLP-VGRPN-NVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE--SS-EE-EEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEeec-CCCcc-eeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 344466666 6789999998887554432 23443 22 211 1233 32333322 2 267777 456 444
Q ss_pred EEecc--CCCcccCCccEEE--cC-CCcEEEEeCCCCCCcccccccccccCCCce--EEEEeC-CCCeeE----Eeeccc
Q 026118 84 LVSQF--NGSQLRFANDVIE--AS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGV--LLKYDP-STNQTS----LVLDGL 151 (243)
Q Consensus 84 ~~~~~--~~~~~~~~~~l~~--d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~--v~~~~~-~~~~~~----~~~~~~ 151 (243)
+.... -......+.++|. ++ +|.+|+-... ..|. .|++.. ..+.+. +-..-.
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~----------------k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~ 207 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG----------------KDGRVEQYELTDDGDGKVSATLVREFKVG 207 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE----------------TTSEEEEEEEEE-TTSSEEEEEEEEEE-S
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEec----------------CCceEEEEEEEeCCCCcEeeEEEEEecCC
Confidence 32210 0112234567765 33 5776654322 1233 445432 223321 112223
Q ss_pred cccceEEEcCCCCEEEEEEcCCCeEEEEEeecC
Q 026118 152 YFANGVALSEDERFLVVCESWKFRCVKHFLKVS 184 (243)
Q Consensus 152 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~ 184 (243)
..+.|+++|....+||+++. +..||+|+.+..
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE-~~GIW~y~Aep~ 239 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEE-DVGIWRYDAEPE 239 (381)
T ss_dssp S-EEEEEEETTTTEEEEEET-TTEEEEEESSCC
T ss_pred CcceEEEEecccCCEEEecC-ccEEEEEecCCC
Confidence 46789999998888999985 579999998754
No 156
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=96.97 E-value=0.0037 Score=34.43 Aligned_cols=35 Identities=23% Similarity=-0.027 Sum_probs=30.9
Q ss_pred ccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118 149 DGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 149 ~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
.....|+++++++.++.||+++...+.|.+.+.++
T Consensus 6 ~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 6 EGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 45678999999999999999999999999988775
No 157
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.93 E-value=0.016 Score=48.63 Aligned_cols=150 Identities=13% Similarity=0.090 Sum_probs=87.5
Q ss_pred CcccEEEcCCC-cEE-EEeCCCcEEEEc-cCCcee-EecccCCccccceEEccCCCEEEEEeCCCc-EEEEe-cCCcEEE
Q 026118 11 HPEDVSVDGNG-VLY-TATGDGWIKRMH-PNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVS-EEGVTVL 84 (243)
Q Consensus 11 ~p~~i~~d~~g-~l~-~~~~~~~i~~~~-~~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~g-l~~~~-~~g~~~~ 84 (243)
.|.++-+-+++ +++ +|..+++|..+| ..+++. .+....+..+ .|.|-++|+. ||.+...+ +..++ ...+. +
T Consensus 301 ~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~-~i~F~~~g~r-FissSDdks~riWe~~~~v~-i 377 (503)
T KOG0282|consen 301 VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL-DITFVDEGRR-FISSSDDKSVRIWENRIPVP-I 377 (503)
T ss_pred CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee-eeEEccCCce-EeeeccCccEEEEEcCCCcc-c
Confidence 46667777766 665 555889999999 455532 2222223345 7888899998 77776554 44444 33311 1
Q ss_pred EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-----ee--ccccccceE
Q 026118 85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-----VL--DGLYFANGV 157 (243)
Q Consensus 85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-----~~--~~~~~~~gi 157 (243)
........+..| ++...|.+..+.+.+- .+.++.+... -..+. +. ..-..+..+
T Consensus 378 k~i~~~~~hsmP-~~~~~P~~~~~~aQs~-----------------dN~i~ifs~~-~~~r~nkkK~feGh~vaGys~~v 438 (503)
T KOG0282|consen 378 KNIADPEMHTMP-CLTLHPNGKWFAAQSM-----------------DNYIAIFSTV-PPFRLNKKKRFEGHSVAGYSCQV 438 (503)
T ss_pred hhhcchhhccCc-ceecCCCCCeehhhcc-----------------CceEEEEecc-cccccCHhhhhcceeccCceeeE
Confidence 111111122333 7788888888877543 2345554432 11111 11 113456789
Q ss_pred EEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118 158 ALSEDERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 158 ~~~~dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
.|||||++|. +....+.++.||..+
T Consensus 439 ~fSpDG~~l~-SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 439 DFSPDGRTLC-SGDSDGKVNFWDWKT 463 (503)
T ss_pred EEcCCCCeEE-eecCCccEEEeechh
Confidence 9999999555 445678999998764
No 158
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=96.92 E-value=0.15 Score=40.61 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=89.7
Q ss_pred cccCCcccEEEcCCCc-EEEEeCCCcEEEEc--cCCceeEecccCCccccceEEccCCCEEEEEeCCCc---EEEEe-c-
Q 026118 7 GIVNHPEDVSVDGNGV-LYTATGDGWIKRMH--PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG---LLKVS-E- 78 (243)
Q Consensus 7 g~~~~p~~i~~d~~g~-l~~~~~~~~i~~~~--~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~g---l~~~~-~- 78 (243)
|.+..-.++-+.+|.+ |..+..+|.+..+| ...++..++.+..... ..++.|.|++ ..+..-.. ||.+. +
T Consensus 53 GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVM-tCA~sPSg~~-VAcGGLdN~Csiy~ls~~d 130 (343)
T KOG0286|consen 53 GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVM-TCAYSPSGNF-VACGGLDNKCSIYPLSTRD 130 (343)
T ss_pred ccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEE-EEEECCCCCe-EEecCcCceeEEEeccccc
Confidence 4344444566666775 55555899999999 3445555554434444 6789999998 55543333 44444 3
Q ss_pred -CCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccce
Q 026118 79 -EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANG 156 (243)
Q Consensus 79 -~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~g 156 (243)
+|.........+. ..+..+..+-.|++|.-+ ++ .......|.++++..... ....-..+
T Consensus 131 ~~g~~~v~r~l~gH-tgylScC~f~dD~~ilT~-SG-----------------D~TCalWDie~g~~~~~f~GH~gDV~s 191 (343)
T KOG0286|consen 131 AEGNVRVSRELAGH-TGYLSCCRFLDDNHILTG-SG-----------------DMTCALWDIETGQQTQVFHGHTGDVMS 191 (343)
T ss_pred ccccceeeeeecCc-cceeEEEEEcCCCceEec-CC-----------------CceEEEEEcccceEEEEecCCcccEEE
Confidence 3422222222221 234555566556655543 22 224455677667655543 33445677
Q ss_pred EEEcC-CCCEEEEEEcCCCeEEEEEeec
Q 026118 157 VALSE-DERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 157 i~~~~-dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
|.++| +++ .||+..-+..-..+|...
T Consensus 192 lsl~p~~~n-tFvSg~cD~~aklWD~R~ 218 (343)
T KOG0286|consen 192 LSLSPSDGN-TFVSGGCDKSAKLWDVRS 218 (343)
T ss_pred EecCCCCCC-eEEecccccceeeeeccC
Confidence 88889 888 888876666777777754
No 159
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=96.90 E-value=0.14 Score=41.30 Aligned_cols=199 Identities=11% Similarity=-0.021 Sum_probs=90.3
Q ss_pred CCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe----cCC-cEEEEeccCCCc-ccCCccEEE
Q 026118 28 GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS----EEG-VTVLVSQFNGSQ-LRFANDVIE 101 (243)
Q Consensus 28 ~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~----~~g-~~~~~~~~~~~~-~~~~~~l~~ 101 (243)
.+..|..++..|+...........+...+++|+|+++.++.+.--+..+. .+| ++.......... ...+..+++
T Consensus 207 ~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aF 286 (420)
T KOG2096|consen 207 LDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAF 286 (420)
T ss_pred CCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeee
Confidence 55567777755654433221111222568899999855555443343332 456 443332222111 123344555
Q ss_pred cCCCcEEEEeCCCC-CCcccccccccccCCCceEEEEeCCCCee----EEeeccccccceEEEcCCCCEEEEEEcCCCeE
Q 026118 102 ASDGSLYFTVSSTK-FTPAEYYLDLVSGEPHGVLLKYDPSTNQT----SLVLDGLYFANGVALSEDERFLVVCESWKFRC 176 (243)
Q Consensus 102 d~~G~l~v~~~~~~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~----~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i 176 (243)
+++.+-.++.+..+ | ..|+.+ --|..+.+...+ .++......|..++++|.|+.|-++. ...|
T Consensus 287 sn~S~r~vtvSkDG~w--riwdtd--------VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~--gs~l 354 (420)
T KOG2096|consen 287 SNSSTRAVTVSKDGKW--RIWDTD--------VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF--GSDL 354 (420)
T ss_pred CCCcceeEEEecCCcE--EEeecc--------ceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec--CCce
Confidence 55554444432200 0 000000 011111111111 12222334567899999999554443 3456
Q ss_pred EEEEeecC-CCcceEEeccCCCCCCCceEECCCCCEEEEEecCCchhhhhhhc-ChHHHHHHhhccC
Q 026118 177 VKHFLKVS-GRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQALQS-CKERKQAVGSISR 241 (243)
Q Consensus 177 ~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 241 (243)
..|....+ .....+.. -.+-..+|+.+++|+..+...+.....+.-.-. ...++.+..-+|+
T Consensus 355 ~~~~se~g~~~~~~e~~---h~~~Is~is~~~~g~~~atcGdr~vrv~~ntpg~~~~V~~~~~~l~~ 418 (420)
T KOG2096|consen 355 KVFASEDGKDYPELEDI---HSTTISSISYSSDGKYIATCGDRYVRVIRNTPGWHSRVVKLNRELPE 418 (420)
T ss_pred EEEEcccCccchhHHHh---hcCceeeEEecCCCcEEeeecceeeeeecCCCchhhHHHHhhccccc
Confidence 66654432 11111111 122357799999998766655433322221111 2335555555555
No 160
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.88 E-value=0.13 Score=42.85 Aligned_cols=164 Identities=13% Similarity=0.211 Sum_probs=73.5
Q ss_pred EcCCC-cE-EEEe--CCCcEEEEc-cCCceeEecccCC-ccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEecc
Q 026118 17 VDGNG-VL-YTAT--GDGWIKRMH-PNGTWEDWHQVGS-QSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQF 88 (243)
Q Consensus 17 ~d~~g-~l-~~~~--~~~~i~~~~-~~g~~~~~~~~~~-~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~ 88 (243)
+.++| .| |.++ ....++.+| .+++.+......+ +.. +..+.++.+.+|..-....|.+++ .+. .+.+...+
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred cCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 35566 34 4444 344688888 5666666544332 234 666666666544333356899999 666 44554433
Q ss_pred CCCcccCCccEEEcCCCcEEEEeCCC--CCCc-cccc--ccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcC-C
Q 026118 89 NGSQLRFANDVIEASDGSLYFTVSST--KFTP-AEYY--LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE-D 162 (243)
Q Consensus 89 ~~~~~~~~~~l~~d~~G~l~v~~~~~--~~~~-~~~~--~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~-d 162 (243)
.... ......+++|++.+++.... -+.. ..|. ..........+|+.+|..+|+.+.+.....+..=+.++| |
T Consensus 122 ~~~~--g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 122 DDWK--GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp TTEE--EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred cccc--cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence 2211 11122345677776653110 0100 0111 122334566789999999999988866544433355555 2
Q ss_pred CCEEEEEEcC-----CCeEEEEEeec
Q 026118 163 ERFLVVCESW-----KFRCVKHFLKV 183 (243)
Q Consensus 163 g~~l~v~~~~-----~~~i~~~~~~~ 183 (243)
...|-++..+ +.+||.++.++
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg 225 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDG 225 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS
T ss_pred CCEEEEeccCCcceeceEEEEEEcCC
Confidence 2323333222 24667666554
No 161
>PTZ00420 coronin; Provisional
Probab=96.87 E-value=0.3 Score=43.41 Aligned_cols=150 Identities=12% Similarity=-0.012 Sum_probs=83.3
Q ss_pred cccEEEcCC-Cc-EEEEeCCCcEEEEc-cCCc--ee-------EecccCCccccceEEccCCCEEEE-EeCCCcEEEEe-
Q 026118 12 PEDVSVDGN-GV-LYTATGDGWIKRMH-PNGT--WE-------DWHQVGSQSLLGLTTTKENNVIIV-CDSQQGLLKVS- 77 (243)
Q Consensus 12 p~~i~~d~~-g~-l~~~~~~~~i~~~~-~~g~--~~-------~~~~~~~~~~~~i~~~~~g~l~~v-~~~~~gl~~~~- 77 (243)
..++++.++ +. |..+..++.|..++ +.+. .. .+........ .++++|++..+++ +..++-+..+|
T Consensus 77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~-sVaf~P~g~~iLaSgS~DgtIrIWDl 155 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS-IIDWNPMNYYIMCSSGFDSFVNIWDI 155 (568)
T ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE-EEEECCCCCeEEEEEeCCCeEEEEEC
Confidence 456778874 54 45556888898888 3321 11 1111112234 7899998875233 34344466677
Q ss_pred cCCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccc-cce
Q 026118 78 EEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF-ANG 156 (243)
Q Consensus 78 ~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~-~~g 156 (243)
.++........ ...+.++.++++|+++++... .+.|..+|+.+++.......... ...
T Consensus 156 ~tg~~~~~i~~----~~~V~SlswspdG~lLat~s~-----------------D~~IrIwD~Rsg~~i~tl~gH~g~~~s 214 (568)
T PTZ00420 156 ENEKRAFQINM----PKKLSSLKWNIKGNLLSGTCV-----------------GKHMHIIDPRKQEIASSFHIHDGGKNT 214 (568)
T ss_pred CCCcEEEEEec----CCcEEEEEECCCCCEEEEEec-----------------CCEEEEEECCCCcEEEEEecccCCcee
Confidence 55521111111 134678899999998886432 34688889987765432222111 111
Q ss_pred E-----EEcCCCCEEEEEEcCC---CeEEEEEeec
Q 026118 157 V-----ALSEDERFLVVCESWK---FRCVKHFLKV 183 (243)
Q Consensus 157 i-----~~~~dg~~l~v~~~~~---~~i~~~~~~~ 183 (243)
. .++++++++..+...+ ..|..||+..
T Consensus 215 ~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 215 KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 1 2347887666554433 3688888763
No 162
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=96.82 E-value=0.055 Score=44.19 Aligned_cols=100 Identities=19% Similarity=0.119 Sum_probs=62.0
Q ss_pred CcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcCCCCEEEEE
Q 026118 91 SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSEDERFLVVC 169 (243)
Q Consensus 91 ~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~dg~~l~v~ 169 (243)
+.+..+..|...+||..|++-+- .+..+-..|++++...++. .+.....=+.++|||.+++.+
T Consensus 193 pgh~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 193 PGHNPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred CCCceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 34566778888999999998532 2346777888888877765 445555568999999988887
Q ss_pred EcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118 170 ESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS 210 (243)
Q Consensus 170 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~ 210 (243)
.. +.....+..+... ..+.+. ...++.-+-+.++.|+
T Consensus 257 t~-davfrlw~e~q~w--t~erw~-lgsgrvqtacWspcGs 293 (445)
T KOG2139|consen 257 TC-DAVFRLWQENQSW--TKERWI-LGSGRVQTACWSPCGS 293 (445)
T ss_pred cc-cceeeeehhcccc--eeccee-ccCCceeeeeecCCCC
Confidence 54 2322223222211 112222 2234556667788887
No 163
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=96.75 E-value=0.24 Score=40.61 Aligned_cols=149 Identities=12% Similarity=0.098 Sum_probs=89.1
Q ss_pred CccccceEEccCCCEEEEEe-CC-CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCccccccc
Q 026118 49 SQSLLGLTTTKENNVIIVCD-SQ-QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLD 124 (243)
Q Consensus 49 ~~~~~~i~~~~~g~l~~v~~-~~-~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~ 124 (243)
..+...|.-.+||.. |+.. .+ ..+..++ .+| ..++.. . ......-+..+|||..+++..
T Consensus 195 h~pVtsmqwn~dgt~-l~tAS~gsssi~iWdpdtg~~~pL~~--~--glgg~slLkwSPdgd~lfaAt------------ 257 (445)
T KOG2139|consen 195 HNPVTSMQWNEDGTI-LVTASFGSSSIMIWDPDTGQKIPLIP--K--GLGGFSLLKWSPDGDVLFAAT------------ 257 (445)
T ss_pred CceeeEEEEcCCCCE-EeecccCcceEEEEcCCCCCcccccc--c--CCCceeeEEEcCCCCEEEEec------------
Confidence 455557888899988 4443 33 3577777 566 444431 1 112333468899999777632
Q ss_pred ccccCCCceEEEEeCCCCeeE--EeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCC--Cc------ceEEecc
Q 026118 125 LVSGEPHGVLLKYDPSTNQTS--LVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSG--RT------DREIFID 194 (243)
Q Consensus 125 ~~~~~~~g~v~~~~~~~~~~~--~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~--~~------~~~~~~~ 194 (243)
-.+++++-..+.... +-.-+....++..++|.|+.|.++-.....|++....+.. .. ......+
T Consensus 258 ------~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaD 331 (445)
T KOG2139|consen 258 ------CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD 331 (445)
T ss_pred ------ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeecc
Confidence 124555543323322 2223344778889999999999888888888888776421 11 1111111
Q ss_pred --------C---CCCCCCceEECCCCCEEEEEecCCc
Q 026118 195 --------N---LPGGPDNVNLARDGSFWISIIKMDP 220 (243)
Q Consensus 195 --------~---~~~~~~~i~~d~~G~lwv~~~~~~~ 220 (243)
+ ..+.+..|+.|+.|+-.+....+.+
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred chhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 0 1234667999999986666766655
No 164
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=96.72 E-value=0.16 Score=42.90 Aligned_cols=145 Identities=12% Similarity=0.042 Sum_probs=81.3
Q ss_pred cccEEEcCCCcEE-EEeCCCcEEEEccCCceeE-ecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEec
Q 026118 12 PEDVSVDGNGVLY-TATGDGWIKRMHPNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQ 87 (243)
Q Consensus 12 p~~i~~d~~g~l~-~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~ 87 (243)
--++++..+|.+. .+..+|.+..++.+|.... +... ..|...+.-..+|+++..+..++-+..+| .+| .++...-
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~H-kgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~ 316 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQH-KGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF 316 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhcc-CCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee
Confidence 4467888889766 4558888888887775433 2221 23444788889998844444444577788 677 5543321
Q ss_pred cCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEE
Q 026118 88 FNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFL 166 (243)
Q Consensus 88 ~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l 166 (243)
- ..+ ++.++-.++ -|++.+. ...-.||+++.+ +-...+.......+.|.++|.|. |
T Consensus 317 ~-----s~~-~lDVdW~~~~~F~ts~t---------------d~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~tg~-L 373 (524)
T KOG0273|consen 317 H-----SAP-ALDVDWQSNDEFATSST---------------DGCIHVCKVGED-RPVKTFIGHHGEVNALKWNPTGS-L 373 (524)
T ss_pred c-----cCC-ccceEEecCceEeecCC---------------CceEEEEEecCC-CcceeeecccCceEEEEECCCCc-e
Confidence 1 112 222222121 2222111 112356777766 33444555556678899999998 5
Q ss_pred EEEEcCCCeEEEEE
Q 026118 167 VVCESWKFRCVKHF 180 (243)
Q Consensus 167 ~v~~~~~~~i~~~~ 180 (243)
..+-..+..+-.+.
T Consensus 374 LaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 374 LASCSDDGTLKIWS 387 (524)
T ss_pred EEEecCCCeeEeee
Confidence 55544555554444
No 165
>PRK13684 Ycf48-like protein; Provisional
Probab=96.69 E-value=0.28 Score=40.60 Aligned_cols=174 Identities=15% Similarity=0.098 Sum_probs=86.5
Q ss_pred EEEcCCCcEEEEeCCCcEEEEccCC-ceeEecccC-CccccceEEccCCCEEEEEeCCCcEEEEecCC---cEEEEeccC
Q 026118 15 VSVDGNGVLYTATGDGWIKRMHPNG-TWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG---VTVLVSQFN 89 (243)
Q Consensus 15 i~~d~~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~-~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g---~~~~~~~~~ 89 (243)
+....++.+|+....+.|++-...| ++....... .... ++.+++++.+ +++...+.+++-..++ ...+..
T Consensus 137 i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~-~i~~~~~g~~-v~~g~~G~i~~s~~~gg~tW~~~~~--- 211 (334)
T PRK13684 137 ITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDAAGVVR-NLRRSPDGKY-VAVSSRGNFYSTWEPGQTAWTPHQR--- 211 (334)
T ss_pred EEEECCCcceeeeccceEEEECCCCCCceeCcCCCcceEE-EEEECCCCeE-EEEeCCceEEEEcCCCCCeEEEeeC---
Confidence 4333445566666667777776444 455443322 2223 7788888766 5544333344432333 333221
Q ss_pred CCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEE-eCCCC-eeEEeecc----ccccceEEEcCCC
Q 026118 90 GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKY-DPSTN-QTSLVLDG----LYFANGVALSEDE 163 (243)
Q Consensus 90 ~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~-~~~~~-~~~~~~~~----~~~~~gi~~~~dg 163 (243)
.....+.++++.++|++|+.... +..++ ..+.| .++..... .....++++.+++
T Consensus 212 -~~~~~l~~i~~~~~g~~~~vg~~-------------------G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~ 271 (334)
T PRK13684 212 -NSSRRLQSMGFQPDGNLWMLARG-------------------GQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPG 271 (334)
T ss_pred -CCcccceeeeEcCCCCEEEEecC-------------------CEEEEccCCCCCccccccCCccccccceeeEEEcCCC
Confidence 12245678888899999987322 33344 34434 33322111 1234567888887
Q ss_pred CEEEEEEcCCCeEEEEEeecCCCcceEEec--cCCCCCCCceEECCCCCEEEEEecC
Q 026118 164 RFLVVCESWKFRCVKHFLKVSGRTDREIFI--DNLPGGPDNVNLARDGSFWISIIKM 218 (243)
Q Consensus 164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~d~~G~lwv~~~~~ 218 (243)
+ +|++.. .+.|++ ..+++ .+++... ...+.....+.+..+++.|+....|
T Consensus 272 ~-~~~~G~-~G~v~~-S~d~G--~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G 323 (334)
T PRK13684 272 E-IWAGGG-NGTLLV-SKDGG--KTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRG 323 (334)
T ss_pred C-EEEEcC-CCeEEE-eCCCC--CCCeECCcCCCCCcceEEEEEeCCCceEEECCCc
Confidence 7 887754 455554 22321 2222221 1111112235555566777765544
No 166
>PRK13684 Ycf48-like protein; Provisional
Probab=96.65 E-value=0.3 Score=40.48 Aligned_cols=146 Identities=10% Similarity=0.075 Sum_probs=78.4
Q ss_pred ccEEEcCCCcEEEEeCCCcEEEEc-cCC-ceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe--cCC--cEEEEe
Q 026118 13 EDVSVDGNGVLYTATGDGWIKRMH-PNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EEG--VTVLVS 86 (243)
Q Consensus 13 ~~i~~d~~g~l~~~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~--~~g--~~~~~~ 86 (243)
.++..++++.+++....|.+++.. ..+ ++............++++.+++++ |++.. .|.+++. ..| .+.+..
T Consensus 176 ~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~-~~vg~-~G~~~~~s~d~G~sW~~~~~ 253 (334)
T PRK13684 176 RNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNL-WMLAR-GGQIRFNDPDDLESWSKPII 253 (334)
T ss_pred EEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCE-EEEec-CCEEEEccCCCCCccccccC
Confidence 356666777666555666676653 233 355544332333337888888998 77764 5666663 344 332211
Q ss_pred ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--ccc-cccceEEEcCCC
Q 026118 87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGL-YFANGVALSEDE 163 (243)
Q Consensus 87 ~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--~~~-~~~~gi~~~~dg 163 (243)
+.........++++.+++++|++.. .|.+++-...+.+++... ... ..-+.+.+..++
T Consensus 254 -~~~~~~~~l~~v~~~~~~~~~~~G~------------------~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~ 314 (334)
T PRK13684 254 -PEITNGYGYLDLAYRTPGEIWAGGG------------------NGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPE 314 (334)
T ss_pred -CccccccceeeEEEcCCCCEEEEcC------------------CCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCC
Confidence 1111112345678888889998732 245655333323444432 111 123456666566
Q ss_pred CEEEEEEcCCCeEEEEEe
Q 026118 164 RFLVVCESWKFRCVKHFL 181 (243)
Q Consensus 164 ~~l~v~~~~~~~i~~~~~ 181 (243)
+ .|+.. ..+.|.+++.
T Consensus 315 ~-~~~~G-~~G~il~~~~ 330 (334)
T PRK13684 315 K-GFVLG-QRGVLLRYVG 330 (334)
T ss_pred c-eEEEC-CCceEEEecC
Confidence 5 66664 3577887764
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=96.64 E-value=0.091 Score=42.34 Aligned_cols=145 Identities=10% Similarity=0.022 Sum_probs=82.9
Q ss_pred CCCcEEEEe-CCCcEEEEc-cCCceeE-eccc-----CCccccceEEccCCCEEEEEeCCCcEEEEe--cCC--cEEEEe
Q 026118 19 GNGVLYTAT-GDGWIKRMH-PNGTWED-WHQV-----GSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EEG--VTVLVS 86 (243)
Q Consensus 19 ~~g~l~~~~-~~~~i~~~~-~~g~~~~-~~~~-----~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~--~~g--~~~~~~ 86 (243)
|+-.||.++ .+.-|..+| .+|+.+- +... -.... ++.|++||.. .++....-|..|+ +.| ..+...
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAh-sL~Fs~DGeq-lfaGykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAH-SLQFSPDGEQ-LFAGYKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhhe-eEEecCCCCe-EeecccceEEEeeccCCCCCCcchhh
Confidence 455666555 556677887 4665432 1111 11235 7899999998 5555556677787 445 333332
Q ss_pred ccCCC--cccCCccEEEcCCC--cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcC
Q 026118 87 QFNGS--QLRFANDVIEASDG--SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSE 161 (243)
Q Consensus 87 ~~~~~--~~~~~~~l~~d~~G--~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~ 161 (243)
...+. ....+.++++.|-. .+-++..+ .+-+||+-+. +++-.+. .......-+.+.+
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~----------------q~~giy~~~~--~~pl~llggh~gGvThL~~~e 260 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYG----------------QRVGIYNDDG--RRPLQLLGGHGGGVTHLQWCE 260 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeeccc----------------ceeeeEecCC--CCceeeecccCCCeeeEEecc
Confidence 22111 12344566777732 33344222 1224555443 4443333 3344566689999
Q ss_pred CCCEEEEEEcCCCeEEEEEeec
Q 026118 162 DERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 162 dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
+|+.||........|..+|+..
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred CcCeecccccCCCeEEEEeehh
Confidence 9999999887788999999753
No 168
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.62 E-value=0.061 Score=48.33 Aligned_cols=145 Identities=16% Similarity=0.125 Sum_probs=87.0
Q ss_pred ccEEEcCCCcEEEEe-CCCcEEEEccCCce-eEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEec
Q 026118 13 EDVSVDGNGVLYTAT-GDGWIKRMHPNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVSQ 87 (243)
Q Consensus 13 ~~i~~d~~g~l~~~~-~~~~i~~~~~~g~~-~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~~ 87 (243)
.+++.|.-+++.++. .+|-+-.++..++. ..-......+. +|.....-.++.++.....|..+| .+. ++.+
T Consensus 497 ~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~-~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f--- 572 (910)
T KOG1539|consen 497 TGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSIT-GIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF--- 572 (910)
T ss_pred eEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcc-eeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh---
Confidence 468888777766665 55555566644333 21111112223 565555444434444455788887 443 3322
Q ss_pred cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEE
Q 026118 88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLV 167 (243)
Q Consensus 88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~ 167 (243)
.+. .+.+++++++|||+-.++-+ ..+.|-.+|.-++.+.-...-..-+..+.++|.|++|-
T Consensus 573 -~gh-~nritd~~FS~DgrWlisas-----------------mD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LA 633 (910)
T KOG1539|consen 573 -WGH-GNRITDMTFSPDGRWLISAS-----------------MDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLA 633 (910)
T ss_pred -hcc-ccceeeeEeCCCCcEEEEee-----------------cCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEE
Confidence 221 24678999999998555421 23567778888776543322223456799999999888
Q ss_pred EEEcCCCeEEEEE
Q 026118 168 VCESWKFRCVKHF 180 (243)
Q Consensus 168 v~~~~~~~i~~~~ 180 (243)
.+....+.|+.+.
T Consensus 634 T~Hvd~~gIylWs 646 (910)
T KOG1539|consen 634 TVHVDQNGIYLWS 646 (910)
T ss_pred EEEecCceEEEEE
Confidence 8877777888875
No 169
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=96.62 E-value=0.24 Score=38.96 Aligned_cols=154 Identities=12% Similarity=0.116 Sum_probs=91.6
Q ss_pred CCcccEEEcCC-CcEEEE-eCCCcEEEEccC-C-ceeEe--cc-cCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-
Q 026118 10 NHPEDVSVDGN-GVLYTA-TGDGWIKRMHPN-G-TWEDW--HQ-VGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG- 80 (243)
Q Consensus 10 ~~p~~i~~d~~-g~l~~~-~~~~~i~~~~~~-g-~~~~~--~~-~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g- 80 (243)
.+-.++++.+. |+++.+ ..+..|..++.. + .+.-. .. ..-+....++.+|.|++|..+.+..-+..+. .++
T Consensus 15 ~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e 94 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE 94 (312)
T ss_pred CcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCc
Confidence 34667888875 775544 466777777643 2 12111 11 0112233789999999866666544444444 344
Q ss_pred cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe---eccccccceE
Q 026118 81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV---LDGLYFANGV 157 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~---~~~~~~~~gi 157 (243)
++-+. ..++.. +.+-+++.+++|++..+-+. ..+--|+.++.+ .+++-. .+..+-...+
T Consensus 95 fecv~-~lEGHE-nEVK~Vaws~sG~~LATCSR---------------DKSVWiWe~ded-dEfec~aVL~~HtqDVK~V 156 (312)
T KOG0645|consen 95 FECVA-TLEGHE-NEVKCVAWSASGNYLATCSR---------------DKSVWIWEIDED-DEFECIAVLQEHTQDVKHV 156 (312)
T ss_pred eeEEe-eeeccc-cceeEEEEcCCCCEEEEeeC---------------CCeEEEEEecCC-CcEEEEeeeccccccccEE
Confidence 55433 244432 45668999999998887543 122235566644 555432 2334445678
Q ss_pred EEcCCCCEEEEEEcCCCeEEEEEee
Q 026118 158 ALSEDERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 158 ~~~~dg~~l~v~~~~~~~i~~~~~~ 182 (243)
.++|... |.++-..+++|-.|+-.
T Consensus 157 ~WHPt~d-lL~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 157 IWHPTED-LLFSCSYDNTIKVYRDE 180 (312)
T ss_pred EEcCCcc-eeEEeccCCeEEEEeec
Confidence 9999777 77777788888887655
No 170
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.15 Score=38.74 Aligned_cols=98 Identities=18% Similarity=0.283 Sum_probs=58.9
Q ss_pred CccccceEEccCCCEEEEEeCCCcEEEEecCC---cEEEEeccCCCcccCCccEEEcCCCc----EEEEeCCCCCCcccc
Q 026118 49 SQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG---VTVLVSQFNGSQLRFANDVIEASDGS----LYFTVSSTKFTPAEY 121 (243)
Q Consensus 49 ~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g---~~~~~~~~~~~~~~~~~~l~~d~~G~----l~v~~~~~~~~~~~~ 121 (243)
+.-. |++.|.+ ++ |.++...-+...|+.- ...+....++.+....|.+..- ||. +|.+
T Consensus 131 GeGW-gLt~d~~-~L-imsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t----------- 195 (262)
T COG3823 131 GEGW-GLTSDDK-NL-IMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQT----------- 195 (262)
T ss_pred Ccce-eeecCCc-ce-EeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeee-----------
Confidence 3445 7776544 45 8877544455555432 2233334555555555555332 454 4554
Q ss_pred cccccccCCCceEEEEeCCCCeeEEeec-------------cccccceEEEcCCCCEEEEEEc
Q 026118 122 YLDLVSGEPHGVLLKYDPSTNQTSLVLD-------------GLYFANGVALSEDERFLVVCES 171 (243)
Q Consensus 122 ~~~~~~~~~~g~v~~~~~~~~~~~~~~~-------------~~~~~~gi~~~~dg~~l~v~~~ 171 (243)
..|.|++|++|++....+ .....||||.+++++.+|++.-
T Consensus 196 ----------~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 196 ----------TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ----------cceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 379999999998765321 1235789999999977998853
No 171
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=96.59 E-value=0.048 Score=44.81 Aligned_cols=108 Identities=15% Similarity=0.089 Sum_probs=67.5
Q ss_pred ceEEccCCCEEEEEeCCCcEEE-Ee-cCCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCC
Q 026118 54 GLTTTKENNVIIVCDSQQGLLK-VS-EEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPH 131 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~~~~gl~~-~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~ 131 (243)
++.|+|+|.. .+...+...++ +| .+. +++.. -....+.+.+++.+|||....+. ...
T Consensus 120 ~~~fsp~g~~-l~tGsGD~TvR~WD~~Te-Tp~~t--~KgH~~WVlcvawsPDgk~iASG-----------------~~d 178 (480)
T KOG0271|consen 120 SVQFSPTGSR-LVTGSGDTTVRLWDLDTE-TPLFT--CKGHKNWVLCVAWSPDGKKIASG-----------------SKD 178 (480)
T ss_pred EEEecCCCce-EEecCCCceEEeeccCCC-Cccee--ecCCccEEEEEEECCCcchhhcc-----------------ccC
Confidence 7889999988 44443444444 44 333 12111 11123567789999999877762 356
Q ss_pred ceEEEEeCCCCeeE--EeeccccccceEEEcC-----CCCEEEEEEcCCCeEEEEEeec
Q 026118 132 GVLLKYDPSTNQTS--LVLDGLYFANGVALSE-----DERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 132 g~v~~~~~~~~~~~--~~~~~~~~~~gi~~~~-----dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
|.|..+||++|+.. .+.....+.++|+|.| ..+ .+.+...++.+..+|...
T Consensus 179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~ 236 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKL 236 (480)
T ss_pred CeEEEecCCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccC
Confidence 78999999987643 2333345566777654 455 556666778888888654
No 172
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=96.55 E-value=0.049 Score=43.57 Aligned_cols=147 Identities=12% Similarity=0.177 Sum_probs=83.9
Q ss_pred ccEEEcCCCcEEEEe-CCCcEEEEccCC-----ceeEecccCCccccceEEccCCCEEEEEeCCCc-EEEEe-cCCcEEE
Q 026118 13 EDVSVDGNGVLYTAT-GDGWIKRMHPNG-----TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVS-EEGVTVL 84 (243)
Q Consensus 13 ~~i~~d~~g~l~~~~-~~~~i~~~~~~g-----~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~g-l~~~~-~~g~~~~ 84 (243)
..+.+-|...|.++. .++.|-.+|-.+ .++.+.. -.|..+|.|.|.|.++.+++ ..- +..+| .+- .-+
T Consensus 176 n~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd--~~~vrsiSfHPsGefllvgT-dHp~~rlYdv~T~-Qcf 251 (430)
T KOG0640|consen 176 NDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD--TEPVRSISFHPSGEFLLVGT-DHPTLRLYDVNTY-QCF 251 (430)
T ss_pred cceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhc--cceeeeEeecCCCceEEEec-CCCceeEEeccce-eEe
Confidence 346666766666555 667776666211 2222222 33444899999999967766 444 34444 322 112
Q ss_pred -EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE-Ee--eccccccceEEEc
Q 026118 85 -VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS-LV--LDGLYFANGVALS 160 (243)
Q Consensus 85 -~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~-~~--~~~~~~~~gi~~~ 160 (243)
...++.+....+.++..++.|++|++-+. .|.|-.+|.-+++-. .+ +.+.....+..|.
T Consensus 252 vsanPd~qht~ai~~V~Ys~t~~lYvTaSk-----------------DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft 314 (430)
T KOG0640|consen 252 VSANPDDQHTGAITQVRYSSTGSLYVTASK-----------------DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT 314 (430)
T ss_pred eecCcccccccceeEEEecCCccEEEEecc-----------------CCcEEeeccccHHHHHHHHhhcCCceeeeEEEc
Confidence 12233333456778889999999999543 455666665433321 11 3344556778999
Q ss_pred CCCCEEEEEEcCCCeEEEEEe
Q 026118 161 EDERFLVVCESWKFRCVKHFL 181 (243)
Q Consensus 161 ~dg~~l~v~~~~~~~i~~~~~ 181 (243)
.+|+++.-+.. +..+..+.+
T Consensus 315 kn~kyiLsSG~-DS~vkLWEi 334 (430)
T KOG0640|consen 315 KNGKYILSSGK-DSTVKLWEI 334 (430)
T ss_pred cCCeEEeecCC-cceeeeeee
Confidence 99986665533 333444444
No 173
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.44 E-value=0.32 Score=41.20 Aligned_cols=64 Identities=23% Similarity=0.377 Sum_probs=35.4
Q ss_pred ccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcce--EEecc--------------CCCCCCCceEECCCCC-EEEEE
Q 026118 153 FANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDR--EIFID--------------NLPGGPDNVNLARDGS-FWISI 215 (243)
Q Consensus 153 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~--~~~~~--------------~~~~~~~~i~~d~~G~-lwv~~ 215 (243)
.+..|.+|.|.++||+++...+.|..||+++....+. +++.. ...+.|..+.++.||+ ||+.+
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 4578999999999999999999999999986432221 22211 1234677899999996 99976
Q ss_pred e
Q 026118 216 I 216 (243)
Q Consensus 216 ~ 216 (243)
.
T Consensus 393 S 393 (461)
T PF05694_consen 393 S 393 (461)
T ss_dssp -
T ss_pred e
Confidence 4
No 174
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.40 E-value=0.5 Score=40.08 Aligned_cols=137 Identities=10% Similarity=-0.005 Sum_probs=73.1
Q ss_pred ceEEccCCCEEEEEeCCCcEEEEecCC-c--EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCC
Q 026118 54 GLTTTKENNVIIVCDSQQGLLKVSEEG-V--TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEP 130 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~~~~gl~~~~~~g-~--~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~ 130 (243)
++...++|.+ ++......+++-.+.| . ..+... ......++.+.++|.+|++...
T Consensus 243 ~v~~~~dG~~-~~vg~~G~~~~s~d~G~~~W~~~~~~----~~~~l~~v~~~~dg~l~l~g~~----------------- 300 (398)
T PLN00033 243 TVNRSPDGDY-VAVSSRGNFYLTWEPGQPYWQPHNRA----SARRIQNMGWRADGGLWLLTRG----------------- 300 (398)
T ss_pred eEEEcCCCCE-EEEECCccEEEecCCCCcceEEecCC----CccceeeeeEcCCCCEEEEeCC-----------------
Confidence 4566788888 5655444555555555 2 332221 1234567788899999998532
Q ss_pred CceEEEEeCCCC-----eeEEeec--cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEec--cCCCCCCC
Q 026118 131 HGVLLKYDPSTN-----QTSLVLD--GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFI--DNLPGGPD 201 (243)
Q Consensus 131 ~g~v~~~~~~~~-----~~~~~~~--~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~ 201 (243)
|.+++-+.++. ++..... ......++.+.+++. +|++.. .+.+++- .+++ ..++... .....--.
T Consensus 301 -G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~-~G~v~~s-~D~G--~tW~~~~~~~~~~~~ly 374 (398)
T PLN00033 301 -GGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGG-SGILLRS-TDGG--KSWKRDKGADNIAANLY 374 (398)
T ss_pred -ceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEEC-CCcEEEe-CCCC--cceeEccccCCCCccee
Confidence 56666544422 1222211 112356678887877 887754 3445443 3332 2222221 11111223
Q ss_pred ceEECCCCCEEEEEecC
Q 026118 202 NVNLARDGSFWISIIKM 218 (243)
Q Consensus 202 ~i~~d~~G~lwv~~~~~ 218 (243)
.+.+..+++.|+....|
T Consensus 375 ~v~f~~~~~g~~~G~~G 391 (398)
T PLN00033 375 SVKFFDDKKGFVLGNDG 391 (398)
T ss_pred EEEEcCCCceEEEeCCc
Confidence 57777778888877654
No 175
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.38 E-value=0.35 Score=38.07 Aligned_cols=99 Identities=14% Similarity=0.178 Sum_probs=56.4
Q ss_pred EeCCCcEEEEc-cCC-ceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEeccCCCcccCCccEEEc
Q 026118 26 ATGDGWIKRMH-PNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQFNGSQLRFANDVIEA 102 (243)
Q Consensus 26 ~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d 102 (243)
+...+++|.++ .+| +.-.+.....--. ....|+++.++|.+.+++.++.+| .+.--.+...-.+.-...| +++
T Consensus 69 GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP---~i~ 144 (354)
T KOG4649|consen 69 GCYSGGLYFLCVKTGSQIWNFVILETVKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP---VIA 144 (354)
T ss_pred EEccCcEEEEEecchhheeeeeehhhhcc-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc---eec
Confidence 33456666666 444 2222221111112 345678888889999888999999 4321122222223223333 677
Q ss_pred C-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE
Q 026118 103 S-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL 146 (243)
Q Consensus 103 ~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~ 146 (243)
+ +|.||++.. .|.|.+++++......
T Consensus 145 ~g~~sly~a~t------------------~G~vlavt~~~~~~~~ 171 (354)
T KOG4649|consen 145 PGDGSLYAAIT------------------AGAVLAVTKNPYSSTE 171 (354)
T ss_pred CCCceEEEEec------------------cceEEEEccCCCCcce
Confidence 7 889999853 3678888888664433
No 176
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.31 E-value=0.71 Score=40.82 Aligned_cols=191 Identities=13% Similarity=0.055 Sum_probs=100.5
Q ss_pred eeccccc-CCcccEEEcCCCcEEEEeCCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEE-EEe-c
Q 026118 3 KLGEGIV-NHPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLL-KVS-E 78 (243)
Q Consensus 3 ~~~~g~~-~~p~~i~~d~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~-~~~-~ 78 (243)
.+-.|+- ..-++|++-+.|+|+....+|.|..+|. +++.+.-....+.+.++|+..+.+..+-|+- ..|++ .+. .
T Consensus 62 ~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igc-ddGvl~~~s~~ 140 (691)
T KOG2048|consen 62 PVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGC-DDGVLYDFSIG 140 (691)
T ss_pred EEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeec-CCceEEEEecC
Confidence 3444443 3578899998889998888899999994 5554443333344555899998888756663 34533 333 3
Q ss_pred CCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee----ccccc-
Q 026118 79 EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL----DGLYF- 153 (243)
Q Consensus 79 ~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~----~~~~~- 153 (243)
.+...+..... .....+-++..+++|.-.++.+ ..|.|-..|...+....+. .....
T Consensus 141 p~~I~~~r~l~-rq~sRvLslsw~~~~~~i~~Gs-----------------~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~ 202 (691)
T KOG2048|consen 141 PDKITYKRSLM-RQKSRVLSLSWNPTGTKIAGGS-----------------IDGVIRIWDVKSGQTLHIITMQLDRLSKR 202 (691)
T ss_pred CceEEEEeecc-cccceEEEEEecCCccEEEecc-----------------cCceEEEEEcCCCceEEEeeecccccccC
Confidence 33222222111 1123455788888887444322 1234555565554332211 11111
Q ss_pred cc----eEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEec
Q 026118 154 AN----GVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIK 217 (243)
Q Consensus 154 ~~----gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~ 217 (243)
-. ++.+-.++. +. +....+.|..+|...+++-+... ....-.-.|+.+.+++ ++.++.+
T Consensus 203 ~~~iVWSv~~Lrd~t-I~-sgDS~G~V~FWd~~~gTLiqS~~---~h~adVl~Lav~~~~d~vfsaGvd 266 (691)
T KOG2048|consen 203 EPTIVWSVLFLRDST-IA-SGDSAGTVTFWDSIFGTLIQSHS---CHDADVLALAVADNEDRVFSAGVD 266 (691)
T ss_pred CceEEEEEEEeecCc-EE-EecCCceEEEEcccCcchhhhhh---hhhcceeEEEEcCCCCeEEEccCC
Confidence 11 233335664 44 33456888888876543322111 1111233466666543 5555544
No 177
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.24 E-value=0.3 Score=40.90 Aligned_cols=132 Identities=10% Similarity=0.136 Sum_probs=78.6
Q ss_pred ccEEEcCCCcEEEEe-CCCcEEEEc-cCC-ceeEecccCCccccceEEccCCCEEEEEeCCCc-EEEEe-cC-C-cEEEE
Q 026118 13 EDVSVDGNGVLYTAT-GDGWIKRMH-PNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVS-EE-G-VTVLV 85 (243)
Q Consensus 13 ~~i~~d~~g~l~~~~-~~~~i~~~~-~~g-~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~g-l~~~~-~~-g-~~~~~ 85 (243)
.+.++-|||.|+... .++.|-.+| ..+ .+..|... ..|...|.|+.+|-+|.++. .++ |..+| +. . ++.+.
T Consensus 351 ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpgh-t~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGH-TGPVKAISFSENGYWLATAA-DDGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCC-CCceeEEEeccCceEEEEEe-cCCeEEEEEehhhcccceee
Confidence 356777888877544 677677777 332 34445432 23444899998887644444 445 88888 43 2 44443
Q ss_pred eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee---ccccccceEEEcCC
Q 026118 86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL---DGLYFANGVALSED 162 (243)
Q Consensus 86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~---~~~~~~~gi~~~~d 162 (243)
. .+. -.++.+.+|..|.+.+.-. ..-.||.+...+.+++.+. ......+++.|...
T Consensus 429 l-~~~---~~v~s~~fD~SGt~L~~~g-----------------~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~ 487 (506)
T KOG0289|consen 429 L-DEK---KEVNSLSFDQSGTYLGIAG-----------------SDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEH 487 (506)
T ss_pred c-ccc---ccceeEEEcCCCCeEEeec-----------------ceeEEEEEecccccceeeehhhhcccccceeeeccc
Confidence 2 111 2467889999998666521 2236888887777666542 22345677777665
Q ss_pred CCEEE
Q 026118 163 ERFLV 167 (243)
Q Consensus 163 g~~l~ 167 (243)
-+++.
T Consensus 488 aq~l~ 492 (506)
T KOG0289|consen 488 AQYLA 492 (506)
T ss_pred ceEEe
Confidence 55333
No 178
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.18 E-value=0.33 Score=43.25 Aligned_cols=147 Identities=13% Similarity=0.100 Sum_probs=85.8
Q ss_pred EEEcCCCcEEEEeCCCcEEEEc-cCCcee-Eeccc-CCccccceEEccCCCEEEEEeCCCcEE-EEe-cCC--cEEEEec
Q 026118 15 VSVDGNGVLYTATGDGWIKRMH-PNGTWE-DWHQV-GSQSLLGLTTTKENNVIIVCDSQQGLL-KVS-EEG--VTVLVSQ 87 (243)
Q Consensus 15 i~~d~~g~l~~~~~~~~i~~~~-~~g~~~-~~~~~-~~~~~~~i~~~~~g~l~~v~~~~~gl~-~~~-~~g--~~~~~~~ 87 (243)
++++++|....+..+..|..++ .+++.. +.... ...-...+++++|+++|+.+.. ..+. .+. ++| .+.+...
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~r-s~llrv~~L~tgk~irswKa~ 103 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASR-SQLLRVWSLPTGKLIRSWKAI 103 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeec-cceEEEEEcccchHhHhHhhc
Confidence 8899999766665666788887 566653 22111 1111227888899888566654 4444 444 666 3322211
Q ss_pred cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-ccccceEEEcCCCC-E
Q 026118 88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDER-F 165 (243)
Q Consensus 88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-~~~~~gi~~~~dg~-~ 165 (243)
-.+ .+-.|+++|.|.+..+- ...+.+-..|-..+.......+ ......+.|+|+-+ +
T Consensus 104 He~----Pvi~ma~~~~g~LlAtg-----------------gaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~ 162 (775)
T KOG0319|consen 104 HEA----PVITMAFDPTGTLLATG-----------------GADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRW 162 (775)
T ss_pred cCC----CeEEEEEcCCCceEEec-----------------cccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchh
Confidence 111 13367899988655541 1234555555554554444444 34456788888655 3
Q ss_pred EEEEEcCCCeEEEEEeec
Q 026118 166 LVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 166 l~v~~~~~~~i~~~~~~~ 183 (243)
+.++...++.+..|+...
T Consensus 163 lL~sg~~D~~v~vwnl~~ 180 (775)
T KOG0319|consen 163 LLASGATDGTVRVWNLND 180 (775)
T ss_pred heeecCCCceEEEEEccc
Confidence 445556678899999874
No 179
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=96.18 E-value=0.034 Score=42.91 Aligned_cols=120 Identities=22% Similarity=0.285 Sum_probs=56.6
Q ss_pred ceecccccCCcccEEEcCCCcEEEEeCCCcEEEEc-cCCceeEec--------ccCCc-cccceEEccCCCEEEEEeCCC
Q 026118 2 IKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWH--------QVGSQ-SLLGLTTTKENNVIIVCDSQQ 71 (243)
Q Consensus 2 ~~~~~g~~~~p~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~--------~~~~~-~~~~i~~~~~g~l~~v~~~~~ 71 (243)
++++.|....=..|++|++|.||....++.++|.. +...-..|. ...-+ .. .+.++++|.| |+.+.+.
T Consensus 73 ~~Ig~g~W~~F~~i~~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~-~vfa~~~GvL-Y~i~~dg 150 (229)
T PF14517_consen 73 KQIGDGGWNSFKFIFFDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFD-AVFAGPNGVL-YAITPDG 150 (229)
T ss_dssp EEEE-S-GGG-SEEEE-TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEE-EEEE-TTS-E-EEEETTE
T ss_pred cccccCcccceeEEEecCCccEEEeccccceeeccCCCccCcchhhccceecccCCCccce-EEEeCCCccE-EEEcCCC
Confidence 34566633333389999999999888889999987 222111121 11111 22 5677899988 8887544
Q ss_pred cEEEEe-cCC--cEEE--EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCC
Q 026118 72 GLLKVS-EEG--VTVL--VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST 141 (243)
Q Consensus 72 gl~~~~-~~g--~~~~--~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~ 141 (243)
.+++.. +++ -+.+ ...+....-....-|...++|+||..++ .|.|||+.+.+
T Consensus 151 ~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~~------------------~G~lyr~~~p~ 207 (229)
T PF14517_consen 151 RLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVKS------------------NGKLYRGRPPQ 207 (229)
T ss_dssp -EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-E------------------TTEEEEES---
T ss_pred ceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCcEEEEec------------------CCEEeccCCcc
Confidence 477774 322 1100 0001111112234567778999998843 36899887764
No 180
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=96.14 E-value=0.0054 Score=29.41 Aligned_cols=17 Identities=24% Similarity=0.499 Sum_probs=13.7
Q ss_pred CCceEECCCCCEEEEEe
Q 026118 200 PDNVNLARDGSFWISII 216 (243)
Q Consensus 200 ~~~i~~d~~G~lwv~~~ 216 (243)
...|+.|++|+|||++.
T Consensus 7 I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 7 IYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp EEEEEE-TTSCEEEEET
T ss_pred EEEEEEcCCcCEEEEeC
Confidence 45689999999999985
No 181
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=0.3 Score=44.72 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=51.7
Q ss_pred cccCCcccEEEcCCCcEEEEe-CCCcEEEEccC--CceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe
Q 026118 7 GIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPN--GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (243)
Q Consensus 7 g~~~~p~~i~~d~~g~l~~~~-~~~~i~~~~~~--g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~ 77 (243)
|..++-.++.+++...|.+++ .++.|..+|.+ ..+..+.....+-+ -++..|..++ |.+.++.|+..|.
T Consensus 248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW-~laahP~lNL-fAAgHDsGm~VFk 319 (1202)
T KOG0292|consen 248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW-ILAAHPELNL-FAAGHDSGMIVFK 319 (1202)
T ss_pred cccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE-EEEecCCcce-eeeecCCceEEEE
Confidence 345677789999988888777 78889999843 34555554444445 8899999999 9998888977775
No 182
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.11 E-value=0.74 Score=39.11 Aligned_cols=196 Identities=11% Similarity=0.063 Sum_probs=86.3
Q ss_pred CCcEEEEe-CCCcEEEEc--cCCc---e-eEecc-------cCCccccceEEccCCCEEEEEeCC-------CcEEEEec
Q 026118 20 NGVLYTAT-GDGWIKRMH--PNGT---W-EDWHQ-------VGSQSLLGLTTTKENNVIIVCDSQ-------QGLLKVSE 78 (243)
Q Consensus 20 ~g~l~~~~-~~~~i~~~~--~~g~---~-~~~~~-------~~~~~~~~i~~~~~g~l~~v~~~~-------~gl~~~~~ 78 (243)
...|++.. ..++||.+| ++-+ + +.+.. ....|. ....-++|++ +|...+ .|++.+|.
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PH-T~Hclp~G~i-mIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPH-TVHCLPDGRI-MISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEE-EEEE-SS--E-EEEEEEETTS-S--EEEEE-T
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCc-eeeecCCccE-EEEeccCCCCCCCCcEEEEcC
Confidence 34577776 778999999 2222 1 11211 012344 4445588988 665421 35888884
Q ss_pred CCcEEEEec-cCCCcccCCccEEEcCCCcEEEEeCCCCCCcc------cccccccccCCCceEEEEeCCCCeeEEeec--
Q 026118 79 EGVTVLVSQ-FNGSQLRFANDVIEASDGSLYFTVSSTKFTPA------EYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-- 149 (243)
Q Consensus 79 ~g~~~~~~~-~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~------~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-- 149 (243)
+.+...... .......+..++.+.+..++-++.. |+.. ....++........|...|..+.+..+...
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSe---Wg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg 241 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSE---WGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG 241 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B------HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEec---cCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence 433332221 1111234556777888888888753 3321 011222223334568889998777765432
Q ss_pred -cccccceEEE--cCCCCEEEEEEcCCCeEEEEEee-cCCCcceEEe--cc---------CC-------CCCCCceEECC
Q 026118 150 -GLYFANGVAL--SEDERFLVVCESWKFRCVKHFLK-VSGRTDREIF--ID---------NL-------PGGPDNVNLAR 207 (243)
Q Consensus 150 -~~~~~~gi~~--~~dg~~l~v~~~~~~~i~~~~~~-~~~~~~~~~~--~~---------~~-------~~~~~~i~~d~ 207 (243)
....|--+-| +|+..+-|++...+.+|+++..+ ++.-....++ .. .. ++++..|.++-
T Consensus 242 ~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl 321 (461)
T PF05694_consen 242 EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL 321 (461)
T ss_dssp TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence 1223433433 56677788888888899998774 3211111111 10 11 45677888888
Q ss_pred CCC-EEEEEecCCc
Q 026118 208 DGS-FWISIIKMDP 220 (243)
Q Consensus 208 ~G~-lwv~~~~~~~ 220 (243)
|.+ |||++|..+.
T Consensus 322 DDrfLYvs~W~~Gd 335 (461)
T PF05694_consen 322 DDRFLYVSNWLHGD 335 (461)
T ss_dssp TS-EEEEEETTTTE
T ss_pred CCCEEEEEcccCCc
Confidence 887 9999987653
No 183
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=96.02 E-value=0.011 Score=28.36 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=15.8
Q ss_pred ccCCccEEEcCCCcEEEEeC
Q 026118 93 LRFANDVIEASDGSLYFTVS 112 (243)
Q Consensus 93 ~~~~~~l~~d~~G~l~v~~~ 112 (243)
.+.+.+|..|++|++|+++.
T Consensus 4 ~n~I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 4 NNNIYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp SSCEEEEEE-TTSCEEEEET
T ss_pred CCeEEEEEEcCCcCEEEEeC
Confidence 45678999999999999863
No 184
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=95.95 E-value=0.48 Score=39.49 Aligned_cols=124 Identities=12% Similarity=0.060 Sum_probs=73.0
Q ss_pred CCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCc-ccCCccEEEcC
Q 026118 28 GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQ-LRFANDVIEAS 103 (243)
Q Consensus 28 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~-~~~~~~l~~d~ 103 (243)
.++.|..+|. ......-....+... ++....+|.-+..+...+-+-.+| .+- +.+... ..+.. ..-...++++|
T Consensus 320 ~DkkvRfwD~Rs~~~~~sv~~gg~vt-Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s-A~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 320 FDKKVRFWDIRSADKTRSVPLGGRVT-SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS-AEGFKCASDWTRVVFSP 397 (459)
T ss_pred cccceEEEeccCCceeeEeecCccee-eEeeccCCeEEeeecCCCceeeeecccccEEEEee-ccccccccccceeEECC
Confidence 5667777772 222222222223444 777888887646665445566666 433 333222 11111 12244678899
Q ss_pred CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc---ccccceEEEcCCCCEEEEEE
Q 026118 104 DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG---LYFANGVALSEDERFLVVCE 170 (243)
Q Consensus 104 ~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~---~~~~~gi~~~~dg~~l~v~~ 170 (243)
++.+..+. ...+.||..+..+++++..... ....+.++|++-|.+|.-++
T Consensus 398 d~~YvaAG-----------------S~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 398 DGSYVAAG-----------------SADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred CCceeeec-----------------cCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 98877663 2457899999999988876432 22456789999888776554
No 185
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=95.95 E-value=0.22 Score=42.71 Aligned_cols=145 Identities=10% Similarity=0.018 Sum_probs=84.8
Q ss_pred ccceEEccCCCEEEEEeCCCcEEEEecCC----cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccc
Q 026118 52 LLGLTTTKENNVIIVCDSQQGLLKVSEEG----VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVS 127 (243)
Q Consensus 52 ~~~i~~~~~g~l~~v~~~~~gl~~~~~~g----~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~ 127 (243)
++.+++|+.|-.++.+....-+..+|-.| .+.+. ....-....++++.+.+-|..+++.++
T Consensus 170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr-~l~P~E~h~i~sl~ys~Tg~~iLvvsg-------------- 234 (641)
T KOG0772|consen 170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFR-QLQPCETHQINSLQYSVTGDQILVVSG-------------- 234 (641)
T ss_pred EEEeeecCCCceeeeccccceEEEEecccccccchhhh-ccCcccccccceeeecCCCCeEEEEec--------------
Confidence 43789999998745555555677777223 23222 222223356778888888776655433
Q ss_pred cCCCceEEEEeCCCCeeEEeeccc-------------cccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc
Q 026118 128 GEPHGVLLKYDPSTNQTSLVLDGL-------------YFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID 194 (243)
Q Consensus 128 ~~~~g~v~~~~~~~~~~~~~~~~~-------------~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~ 194 (243)
+...-.+|.++.++-....+- ...+.-.|+|+.+-.+++...++++..++.+.. ..+.+++..
T Consensus 235 ---~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~-k~q~qVik~ 310 (641)
T KOG0772|consen 235 ---SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNT-KSQLQVIKT 310 (641)
T ss_pred ---CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCc-hhheeEEee
Confidence 122334566644433332211 112345788888878888888888888888753 355566643
Q ss_pred CCCC----CCCceEECCCCCEEEEE
Q 026118 195 NLPG----GPDNVNLARDGSFWISI 215 (243)
Q Consensus 195 ~~~~----~~~~i~~d~~G~lwv~~ 215 (243)
...+ -+...+++++|.+..+.
T Consensus 311 k~~~g~Rv~~tsC~~nrdg~~iAag 335 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNRDGKLIAAG 335 (641)
T ss_pred ccCCCcccCceeeecCCCcchhhhc
Confidence 2211 24557788999874443
No 186
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.95 E-value=0.74 Score=42.70 Aligned_cols=144 Identities=16% Similarity=0.086 Sum_probs=81.1
Q ss_pred ceEEccCCCEEEEEeCCCcEE-EEecC--C----c---------EEEE--eccCCCcccCCccEEEcCCCcEEEEeCCCC
Q 026118 54 GLTTTKENNVIIVCDSQQGLL-KVSEE--G----V---------TVLV--SQFNGSQLRFANDVIEASDGSLYFTVSSTK 115 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~~~~gl~-~~~~~--g----~---------~~~~--~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~ 115 (243)
++.+++||..|+++. +++++ .+... + + +... ....+ ..+-+.+++.+|++.+.++.+
T Consensus 74 CVR~S~dG~~lAsGS-DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~s--- 148 (942)
T KOG0973|consen 74 CVRFSPDGSYLASGS-DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSVS--- 148 (942)
T ss_pred EEEECCCCCeEeecc-CcceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccEEEEec---
Confidence 778999999856665 44543 33322 1 1 1100 01112 123456788999998888743
Q ss_pred CCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcce--EEe
Q 026118 116 FTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDR--EIF 192 (243)
Q Consensus 116 ~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~--~~~ 192 (243)
..+.|..+|..+.+...... ....+-|+.|||-|+++- +...+..|..|+..+-.+.+. +.|
T Consensus 149 --------------~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~A-SqsdDrtikvwrt~dw~i~k~It~pf 213 (942)
T KOG0973|consen 149 --------------LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFA-SQSDDRTLKVWRTSDWGIEKSITKPF 213 (942)
T ss_pred --------------ccceEEEEccccceeeeeeecccccccceEECCccCeee-eecCCceEEEEEcccceeeEeeccch
Confidence 24578889988765544443 345678999999999544 445567777777543111110 011
Q ss_pred cc-CCCCCCCceEECCCCCEEEEEec
Q 026118 193 ID-NLPGGPDNVNLARDGSFWISIIK 217 (243)
Q Consensus 193 ~~-~~~~~~~~i~~d~~G~lwv~~~~ 217 (243)
.. ....+-.-+..+|||...++.+.
T Consensus 214 ~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred hhCCCcceeeecccCCCcCeecchhh
Confidence 00 11123333666777776665544
No 187
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=95.88 E-value=0.46 Score=39.67 Aligned_cols=152 Identities=13% Similarity=0.065 Sum_probs=81.6
Q ss_pred cccccCCcccEEEcCCCcEEEEeCCCcE-EEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCc
Q 026118 5 GEGIVNHPEDVSVDGNGVLYTATGDGWI-KRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGV 81 (243)
Q Consensus 5 ~~g~~~~p~~i~~d~~g~l~~~~~~~~i-~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~ 81 (243)
-||.-..-.+|++-+||-|..+.....+ ..+| ..|+-.-+......+..+++++|+|-. .++....+.+++- -.+.
T Consensus 299 QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~-lATgs~Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 299 QEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYH-LATGSSDNTCKVWDLRMR 377 (459)
T ss_pred hcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceE-EeecCCCCcEEEeeeccc
Confidence 3554456778999999988766532222 4455 344433222222233338999999987 4443345555443 2221
Q ss_pred EEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-eeccccccceEEE
Q 026118 82 TVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VLDGLYFANGVAL 159 (243)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-~~~~~~~~~gi~~ 159 (243)
..+...+. ..+.+..|.++| .|.+.++-+. .+.+-.+...+..... ++.......++.+
T Consensus 378 ~~ly~ipA--H~nlVS~Vk~~p~~g~fL~Tasy-----------------D~t~kiWs~~~~~~~ksLaGHe~kV~s~Di 438 (459)
T KOG0272|consen 378 SELYTIPA--HSNLVSQVKYSPQEGYFLVTASY-----------------DNTVKIWSTRTWSPLKSLAGHEGKVISLDI 438 (459)
T ss_pred ccceeccc--ccchhhheEecccCCeEEEEccc-----------------CcceeeecCCCcccchhhcCCccceEEEEe
Confidence 22221111 124567889998 4566665322 2334444555444333 3344455678889
Q ss_pred cCCCCEEEEEEcCCCeEE
Q 026118 160 SEDERFLVVCESWKFRCV 177 (243)
Q Consensus 160 ~~dg~~l~v~~~~~~~i~ 177 (243)
++|+.+ .++...+.++-
T Consensus 439 s~d~~~-i~t~s~DRT~K 455 (459)
T KOG0272|consen 439 SPDSQA-IATSSFDRTIK 455 (459)
T ss_pred ccCCce-EEEeccCceee
Confidence 999984 44444555543
No 188
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.84 E-value=0.38 Score=44.51 Aligned_cols=137 Identities=14% Similarity=0.150 Sum_probs=74.4
Q ss_pred ccEEEcCCC-cEEEEeCCCcEEEEccC-----------C---ceeEec------ccCCccccceEEccCCCEEEEEeCCC
Q 026118 13 EDVSVDGNG-VLYTATGDGWIKRMHPN-----------G---TWEDWH------QVGSQSLLGLTTTKENNVIIVCDSQQ 71 (243)
Q Consensus 13 ~~i~~d~~g-~l~~~~~~~~i~~~~~~-----------g---~~~~~~------~~~~~~~~~i~~~~~g~l~~v~~~~~ 71 (243)
.++-+.+|| .|++|.++.-|..+... | .+..|. -...... .+.-+|++.+|..+..+.
T Consensus 73 ~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-Dv~Wsp~~~~lvS~s~Dn 151 (942)
T KOG0973|consen 73 NCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-DVNWSPDDSLLVSVSLDN 151 (942)
T ss_pred eEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-eeccCCCccEEEEecccc
Confidence 356678888 46677666655555422 0 011111 1112334 667788888845555556
Q ss_pred cEEEEe-cCC--cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe-
Q 026118 72 GLLKVS-EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV- 147 (243)
Q Consensus 72 gl~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~- 147 (243)
.|+.++ .+. .+.+. + ....+-|+.+||-|+++.+.+.. ..-.||+... -..+..
T Consensus 152 sViiwn~~tF~~~~vl~----~-H~s~VKGvs~DP~Gky~ASqsdD---------------rtikvwrt~d--w~i~k~I 209 (942)
T KOG0973|consen 152 SVIIWNAKTFELLKVLR----G-HQSLVKGVSWDPIGKYFASQSDD---------------RTLKVWRTSD--WGIEKSI 209 (942)
T ss_pred eEEEEccccceeeeeee----c-ccccccceEECCccCeeeeecCC---------------ceEEEEEccc--ceeeEee
Confidence 788888 444 22222 1 12456789999999988886541 2224555222 222222
Q ss_pred ecc------ccccceEEEcCCCCEEEEEEcC
Q 026118 148 LDG------LYFANGVALSEDERFLVVCESW 172 (243)
Q Consensus 148 ~~~------~~~~~gi~~~~dg~~l~v~~~~ 172 (243)
.+. ..+-..+-++|||++|-..+..
T Consensus 210 t~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 210 TKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred ccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 111 1123457888888877766543
No 189
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.76 E-value=0.36 Score=40.49 Aligned_cols=106 Identities=15% Similarity=0.114 Sum_probs=59.5
Q ss_pred EccCCCEEEEEeCCCcEEEEe-cCCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEE
Q 026118 57 TTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLL 135 (243)
Q Consensus 57 ~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~ 135 (243)
...+|++ |+......++.+| .++.......... .....++-....+|++|+++.. +.+|
T Consensus 65 ~~~dg~v-~~~~~~G~i~A~d~~~g~~~W~~~~~~-~~~~~~~~~~~~~G~i~~g~~~------------------g~~y 124 (370)
T COG1520 65 ADGDGTV-YVGTRDGNIFALNPDTGLVKWSYPLLG-AVAQLSGPILGSDGKIYVGSWD------------------GKLY 124 (370)
T ss_pred EeeCCeE-EEecCCCcEEEEeCCCCcEEecccCcC-cceeccCceEEeCCeEEEeccc------------------ceEE
Confidence 5678888 8886555699999 5553322221111 0011222234448999999643 4799
Q ss_pred EEeCCCCeeEEeecccc--ccceEEEcCCCCEEEEEEcCCCeEEEEEeecC
Q 026118 136 KYDPSTNQTSLVLDGLY--FANGVALSEDERFLVVCESWKFRCVKHFLKVS 184 (243)
Q Consensus 136 ~~~~~~~~~~~~~~~~~--~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~ 184 (243)
++|..+|+......... ...+-++-.++. +|+.. .++.++.++.+.+
T Consensus 125 ~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~-v~~~s-~~g~~~al~~~tG 173 (370)
T COG1520 125 ALDASTGTLVWSRNVGGSPYYASPPVVGDGT-VYVGT-DDGHLYALNADTG 173 (370)
T ss_pred EEECCCCcEEEEEecCCCeEEecCcEEcCcE-EEEec-CCCeEEEEEccCC
Confidence 99997687665432222 111122223555 66664 4567887777643
No 190
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=95.74 E-value=0.75 Score=36.20 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=53.2
Q ss_pred ceEEccCCCEEEEEeCCCcEEEE-e-cCCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCC
Q 026118 54 GLTTTKENNVIIVCDSQQGLLKV-S-EEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPH 131 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~~~~gl~~~-~-~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~ 131 (243)
-+...-++++ |+.+.+.|-+.+ . +. .+++.. +...+ ....+|.+||+|+.+.+.+. .
T Consensus 152 e~~w~~~nd~-Fflt~GlG~v~ILsyps-Lkpv~s-i~AH~-snCicI~f~p~GryfA~GsA-----------------D 210 (313)
T KOG1407|consen 152 EISWNNSNDL-FFLTNGLGCVEILSYPS-LKPVQS-IKAHP-SNCICIEFDPDGRYFATGSA-----------------D 210 (313)
T ss_pred eeeecCCCCE-EEEecCCceEEEEeccc-cccccc-cccCC-cceEEEEECCCCceEeeccc-----------------c
Confidence 4566666777 555545443322 2 32 122111 11111 34457788999998876332 2
Q ss_pred ceEEEEeCCCCeeEEeecccccc-ceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118 132 GVLLKYDPSTNQTSLVLDGLYFA-NGVALSEDERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 132 g~v~~~~~~~~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 182 (243)
.-+-..|.+.---.+....+.+| ..|.|+-||+ +..+.+.+.-|-.....
T Consensus 211 AlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~ve 261 (313)
T KOG1407|consen 211 ALVSLWDVDELICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVE 261 (313)
T ss_pred ceeeccChhHhhhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecc
Confidence 23444555422122223333333 5688999998 44444445555444433
No 191
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.74 E-value=0.76 Score=36.27 Aligned_cols=148 Identities=13% Similarity=0.064 Sum_probs=79.1
Q ss_pred CCcccEEEcCCCcEEEEeCCCcEEEEc-cCCceeEecccCCcccc-ceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118 10 NHPEDVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQSLL-GLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLV 85 (243)
Q Consensus 10 ~~p~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~-~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~ 85 (243)
..|--++-|..-.+|++...+.+..+| ..|++..-..-+.+... .+.. |+++.++-...++|.++ .+| .-...
T Consensus 13 aspLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vv---gdfVV~GCy~g~lYfl~~~tGs~~w~f 89 (354)
T KOG4649|consen 13 ASPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVV---GDFVVLGCYSGGLYFLCVKTGSQIWNF 89 (354)
T ss_pred CCcEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEE---CCEEEEEEccCcEEEEEecchhheeee
Confidence 356556666666788998888888998 46665432221122220 2332 45535555667788888 777 22222
Q ss_pred eccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE-EeeccccccceEEEcC-C
Q 026118 86 SQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS-LVLDGLYFANGVALSE-D 162 (243)
Q Consensus 86 ~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~-~~~~~~~~~~gi~~~~-d 162 (243)
...+.- .. .-..|.++. +|.+. .++..|.+|+.+..-. ...-+...-.+.++++ +
T Consensus 90 ~~~~~v---k~-~a~~d~~~glIycgs------------------hd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~ 147 (354)
T KOG4649|consen 90 VILETV---KV-RAQCDFDGGLIYCGS------------------HDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGD 147 (354)
T ss_pred eehhhh---cc-ceEEcCCCceEEEec------------------CCCcEEEecccccceEEecccCCceeccceecCCC
Confidence 111110 11 114567655 55553 2346777777643211 1111122233456667 5
Q ss_pred CCEEEEEEcCCCeEEEEEeecC
Q 026118 163 ERFLVVCESWKFRCVKHFLKVS 184 (243)
Q Consensus 163 g~~l~v~~~~~~~i~~~~~~~~ 184 (243)
+. ||++.. .+.+.+.++++.
T Consensus 148 ~s-ly~a~t-~G~vlavt~~~~ 167 (354)
T KOG4649|consen 148 GS-LYAAIT-AGAVLAVTKNPY 167 (354)
T ss_pred ce-EEEEec-cceEEEEccCCC
Confidence 55 999865 467777766543
No 192
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=95.65 E-value=1 Score=37.06 Aligned_cols=205 Identities=11% Similarity=0.071 Sum_probs=103.4
Q ss_pred cCCcccEEEcCCCcEE-EEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEE
Q 026118 9 VNHPEDVSVDGNGVLY-TATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVL 84 (243)
Q Consensus 9 ~~~p~~i~~d~~g~l~-~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~ 84 (243)
+..-+.+.+-|.+.++ .|..+|.++.+. +++...........+.+.=.|-|+|+.+..+...+-|..++ .++ ....
T Consensus 148 ~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~ 227 (399)
T KOG0296|consen 148 VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHK 227 (399)
T ss_pred cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEE
Confidence 3445566667777654 555888888887 55343333232233331234568899844444333466677 566 2221
Q ss_pred EeccCCCc-----ccCCccEEE--cCCCcEEEE----------eCCC--------CCCcc-------cccccc-cccCCC
Q 026118 85 VSQFNGSQ-----LRFANDVIE--ASDGSLYFT----------VSST--------KFTPA-------EYYLDL-VSGEPH 131 (243)
Q Consensus 85 ~~~~~~~~-----~~~~~~l~~--d~~G~l~v~----------~~~~--------~~~~~-------~~~~~~-~~~~~~ 131 (243)
....++.. .+......+ ..++.+++. +.+. ..... +....+ +.+...
T Consensus 228 ~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vd 307 (399)
T KOG0296|consen 228 ITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVD 307 (399)
T ss_pred ecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccccc
Confidence 11111110 111111111 123333333 2210 00000 000111 124556
Q ss_pred ceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCE
Q 026118 132 GVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSF 211 (243)
Q Consensus 132 g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l 211 (243)
|.|..||....++|...........+.|.+ ..+|+.+ ..++.|..+|...+.+. ..+ .+-.-..-.+++.+++++
T Consensus 308 G~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~-c~~g~v~~wDaRtG~l~--~~y-~GH~~~Il~f~ls~~~~~ 382 (399)
T KOG0296|consen 308 GTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTA-CANGKVRQWDARTGQLK--FTY-TGHQMGILDFALSPQKRL 382 (399)
T ss_pred ceEEEEecccchhheeccCCCceEEEEEcC-cchheee-ccCceEEeeeccccceE--EEE-ecCchheeEEEEcCCCcE
Confidence 788889988777776655444556678877 4557766 46788999987653221 111 111112344788899998
Q ss_pred EEEEecC
Q 026118 212 WISIIKM 218 (243)
Q Consensus 212 wv~~~~~ 218 (243)
.|.....
T Consensus 383 vvT~s~D 389 (399)
T KOG0296|consen 383 VVTVSDD 389 (399)
T ss_pred EEEecCC
Confidence 8866543
No 193
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.65 E-value=0.19 Score=42.02 Aligned_cols=84 Identities=18% Similarity=0.049 Sum_probs=46.6
Q ss_pred CceEEEEeCCCCeeEEeeccc-cccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCC--CceEECC
Q 026118 131 HGVLLKYDPSTNQTSLVLDGL-YFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGP--DNVNLAR 207 (243)
Q Consensus 131 ~g~v~~~~~~~~~~~~~~~~~-~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~d~ 207 (243)
...+|.+|.++++.+++.... ....|..++++.+.+|... ...+|.++++++. ....++. ....+. .....++
T Consensus 59 ~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~--e~~~vy~-~p~~~~g~gt~v~n~ 134 (386)
T PF14583_consen 59 NRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTL--EERVVYE-VPDDWKGYGTWVANS 134 (386)
T ss_dssp S-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT----EEEEEE---TTEEEEEEEEE-T
T ss_pred CcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcC--cEEEEEE-CCcccccccceeeCC
Confidence 447999999999999987643 2234677888888876553 3468999988753 2323332 122222 2344577
Q ss_pred CCCEEEEEecC
Q 026118 208 DGSFWISIIKM 218 (243)
Q Consensus 208 ~G~lwv~~~~~ 218 (243)
+++.+++....
T Consensus 135 d~t~~~g~e~~ 145 (386)
T PF14583_consen 135 DCTKLVGIEIS 145 (386)
T ss_dssp TSSEEEEEEEE
T ss_pred CccEEEEEEEe
Confidence 88888887543
No 194
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.63 E-value=0.94 Score=36.60 Aligned_cols=123 Identities=16% Similarity=0.102 Sum_probs=72.1
Q ss_pred cceEEcc--CCCEEEEEeCCCc-EEEEecCCcEEEE--eccCC---CcccCCccEEEcCCCcEEEEeCCCCCCccccc-c
Q 026118 53 LGLTTTK--ENNVIIVCDSQQG-LLKVSEEGVTVLV--SQFNG---SQLRFANDVIEASDGSLYFTVSSTKFTPAEYY-L 123 (243)
Q Consensus 53 ~~i~~~~--~g~l~~v~~~~~g-l~~~~~~g~~~~~--~~~~~---~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~-~ 123 (243)
.|+++.. .+++||.++...+ |-++|.+ +.++. ..... +.--.|..|.. -.++|||+ |+..... .
T Consensus 141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~g~F~DP~iPagyAPFnIqn-ig~~lyVt-----YA~qd~~~~ 213 (336)
T TIGR03118 141 KGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLPGSFIDPALPAGYAPFNVQN-LGGTLYVT-----YAQQDADRN 213 (336)
T ss_pred eeeEEeecCCCceEEEeccCCCceEEecCc-cccccCCCCccCCCCCCCCCCcceEE-ECCeEEEE-----EEecCCccc
Confidence 3566653 3556699887644 5556522 11111 11111 11113445532 35789998 4433222 2
Q ss_pred cccccCCCceEEEEeCCCCeeEEeec--cccccceEEEcC------CCCEEEEEEcCCCeEEEEEeec
Q 026118 124 DLVSGEPHGVLLKYDPSTNQTSLVLD--GLYFANGVALSE------DERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 124 ~~~~~~~~g~v~~~~~~~~~~~~~~~--~~~~~~gi~~~~------dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
+-..+...|-|-.+|+++.-++++.. .+..|=||++.| .|. |.|.+..+++|-.||+..
T Consensus 214 d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~s 280 (336)
T TIGR03118 214 DEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA-LLVGNFGDGTINAYDPQS 280 (336)
T ss_pred ccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCC-eEEeecCCceeEEecCCC
Confidence 22234556789999999544555643 356788888865 455 999999999999999864
No 195
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.59 E-value=1.6 Score=39.10 Aligned_cols=153 Identities=15% Similarity=0.058 Sum_probs=79.1
Q ss_pred CCcccEEEcCCCc--EEEEe-------CCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cC
Q 026118 10 NHPEDVSVDGNGV--LYTAT-------GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EE 79 (243)
Q Consensus 10 ~~p~~i~~d~~g~--l~~~~-------~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~ 79 (243)
..+.++++.++|. .|+.. ....|+..+..+....+.. +...+...++++|+.+|+...+..+.++. .+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~--g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE--GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec--CCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 4566777888774 44442 1224555554444433322 12233677889977657775333344443 22
Q ss_pred C-cEEEEeccCCC-----cccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEE---EeCCCCeeEE---
Q 026118 80 G-VTVLVSQFNGS-----QLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLK---YDPSTNQTSL--- 146 (243)
Q Consensus 80 g-~~~~~~~~~~~-----~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~---~~~~~~~~~~--- 146 (243)
+ -........+. ....+..+.+++||. +.+.. .+.|+. ...+.|+.+.
T Consensus 428 ~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-------------------~g~v~Va~Vvr~~~G~~~l~~~ 488 (591)
T PRK13616 428 ATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-------------------GGKVYLAVVEQTEDGQYALTNP 488 (591)
T ss_pred CCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-------------------CCEEEEEEEEeCCCCceeeccc
Confidence 2 11111111110 013477889999996 44431 124444 3334454222
Q ss_pred --eeccccc-cceEEEcCCCCEEEEEEc-CCCeEEEEEeecC
Q 026118 147 --VLDGLYF-ANGVALSEDERFLVVCES-WKFRCVKHFLKVS 184 (243)
Q Consensus 147 --~~~~~~~-~~gi~~~~dg~~l~v~~~-~~~~i~~~~~~~~ 184 (243)
+...... +..+.|..++. |++... .+..++++.+++.
T Consensus 489 ~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~v~vDG~ 529 (591)
T PRK13616 489 REVGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWYVNLDGS 529 (591)
T ss_pred EEeecccCCccccceEecCCE-EEEEecCCCCceEEEecCCc
Confidence 2333333 47788988888 666544 3355888888764
No 196
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.48 E-value=1.9 Score=39.01 Aligned_cols=143 Identities=10% Similarity=-0.003 Sum_probs=80.9
Q ss_pred ccccceEEccCCCEEEEEeCCCc--EEEEecCCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccc
Q 026118 50 QSLLGLTTTKENNVIIVCDSQQG--LLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVS 127 (243)
Q Consensus 50 ~~~~~i~~~~~g~l~~v~~~~~g--l~~~~~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~ 127 (243)
... ++.++|||++|.|+-.+.- ||.+|. - .+.....|... .+-+|.+++|+.+.+|.+.
T Consensus 510 dvL-~v~~Spdgk~LaVsLLdnTVkVyflDt-l--KFflsLYGHkL-PV~smDIS~DSklivTgSA-------------- 570 (888)
T KOG0306|consen 510 DVL-CVSVSPDGKLLAVSLLDNTVKVYFLDT-L--KFFLSLYGHKL-PVLSMDISPDSKLIVTGSA-------------- 570 (888)
T ss_pred cEE-EEEEcCCCcEEEEEeccCeEEEEEecc-e--eeeeeeccccc-ceeEEeccCCcCeEEeccC--------------
Confidence 345 8889999999666665443 444442 1 11112222222 2458889999999998543
Q ss_pred cCCCceEEEEeCCCCeeEEe-eccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEEC
Q 026118 128 GEPHGVLLKYDPSTNQTSLV-LDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLA 206 (243)
Q Consensus 128 ~~~~g~v~~~~~~~~~~~~~-~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d 206 (243)
..+-.||-+|- |.-.+. .........+.|-|+.. ++++-..++.|-.||-. .+...+.+.. -..-...+++.
T Consensus 571 -DKnVKiWGLdF--GDCHKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~--kFe~iq~L~~-H~~ev~cLav~ 643 (888)
T KOG0306|consen 571 -DKNVKIWGLDF--GDCHKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGE--KFEEIQKLDG-HHSEVWCLAVS 643 (888)
T ss_pred -CCceEEecccc--chhhhhhhcccCceeEEEEcccce-eEEEecCcceEEeechh--hhhhheeecc-chheeeeeEEc
Confidence 13335665554 433222 11122345678888665 77776667777777633 3333333321 11224558888
Q ss_pred CCCCEEEEEecC
Q 026118 207 RDGSFWISIIKM 218 (243)
Q Consensus 207 ~~G~lwv~~~~~ 218 (243)
++|...|+....
T Consensus 644 ~~G~~vvs~shD 655 (888)
T KOG0306|consen 644 PNGSFVVSSSHD 655 (888)
T ss_pred CCCCeEEeccCC
Confidence 888877766553
No 197
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.45 E-value=1.1 Score=36.21 Aligned_cols=133 Identities=14% Similarity=0.058 Sum_probs=72.7
Q ss_pred CCCcEEEEcc--CCceeEecccCCccccceEEccCC---CEEEEEeCCCcEEEEecCCcEEEEeccCCCcccCCccEEEc
Q 026118 28 GDGWIKRMHP--NGTWEDWHQVGSQSLLGLTTTKEN---NVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEA 102 (243)
Q Consensus 28 ~~~~i~~~~~--~g~~~~~~~~~~~~~~~i~~~~~g---~l~~v~~~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~l~~d 102 (243)
.+..|+.+|- ..+.-......+..+ .+.|++.- +| ..+..++.+..++..-+..+.. ..+.. ..++++++.
T Consensus 61 sDetI~IYDm~k~~qlg~ll~Hagsit-aL~F~~~~S~shL-lS~sdDG~i~iw~~~~W~~~~s-lK~H~-~~Vt~lsiH 136 (362)
T KOG0294|consen 61 SDETIHIYDMRKRKQLGILLSHAGSIT-ALKFYPPLSKSHL-LSGSDDGHIIIWRVGSWELLKS-LKAHK-GQVTDLSIH 136 (362)
T ss_pred CCCcEEEEeccchhhhcceeccccceE-EEEecCCcchhhe-eeecCCCcEEEEEcCCeEEeee-ecccc-cccceeEec
Confidence 6778988882 222222222234445 67776544 55 5655444566665322322221 11111 237899999
Q ss_pred CCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118 103 SDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 103 ~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 182 (243)
|.|.|-++..+. ..+-..|.-.|+......=...+.-+.|+|.|.+.++... +.|-.|..+
T Consensus 137 PS~KLALsVg~D-----------------~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~--~~i~i~q~d 197 (362)
T KOG0294|consen 137 PSGKLALSVGGD-----------------QVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR--NKIDIYQLD 197 (362)
T ss_pred CCCceEEEEcCC-----------------ceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEec--cEEEEEecc
Confidence 999988875431 2333344444433222222234455899999997777754 566666654
Q ss_pred c
Q 026118 183 V 183 (243)
Q Consensus 183 ~ 183 (243)
.
T Consensus 198 ~ 198 (362)
T KOG0294|consen 198 N 198 (362)
T ss_pred c
Confidence 3
No 198
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=95.40 E-value=0.23 Score=41.26 Aligned_cols=144 Identities=15% Similarity=0.156 Sum_probs=85.7
Q ss_pred EEEcCCC-cEEEEeCCCcEEEEccCCceeEec---ccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEec
Q 026118 15 VSVDGNG-VLYTATGDGWIKRMHPNGTWEDWH---QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVSQ 87 (243)
Q Consensus 15 i~~d~~g-~l~~~~~~~~i~~~~~~g~~~~~~---~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~~ 87 (243)
+.+.++| +|.+++..|..-.++ |..-.+. .....+..+|..+.+|.. .|....+|.+++- ++- ++.+..
T Consensus 102 v~WtPeGRRLltgs~SGEFtLWN--g~~fnFEtilQaHDs~Vr~m~ws~~g~w-miSgD~gG~iKyWqpnmnnVk~~~a- 177 (464)
T KOG0284|consen 102 VRWTPEGRRLLTGSQSGEFTLWN--GTSFNFETILQAHDSPVRTMKWSHNGTW-MISGDKGGMIKYWQPNMNNVKIIQA- 177 (464)
T ss_pred EEEcCCCceeEeecccccEEEec--CceeeHHHHhhhhcccceeEEEccCCCE-EEEcCCCceEEecccchhhhHHhhH-
Confidence 5556777 588888777777774 3322222 222345557888899987 4444456777776 432 332211
Q ss_pred cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcCCCCEE
Q 026118 88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSEDERFL 166 (243)
Q Consensus 88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~dg~~l 166 (243)
.....+.+++++|...-|++-+. .+.|...|-...+.+++. ....-+..+.++|... |
T Consensus 178 ---hh~eaIRdlafSpnDskF~t~Sd-----------------Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-L 236 (464)
T KOG0284|consen 178 ---HHAEAIRDLAFSPNDSKFLTCSD-----------------DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-L 236 (464)
T ss_pred ---hhhhhhheeccCCCCceeEEecC-----------------CCeEEEEeccCCchhheeccCCCCcceeccCCccc-e
Confidence 11246788999997788887543 344544454333333333 3345577899999877 6
Q ss_pred EEEEcCCCeEEEEEeec
Q 026118 167 VVCESWKFRCVKHFLKV 183 (243)
Q Consensus 167 ~v~~~~~~~i~~~~~~~ 183 (243)
.++...++-|-.+|+..
T Consensus 237 iasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 237 IASGSKDNLVKLWDPRS 253 (464)
T ss_pred eEEccCCceeEeecCCC
Confidence 65555556666677653
No 199
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.33 E-value=1.9 Score=38.19 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=46.3
Q ss_pred CceEEEEeCCCCeeEEeec-cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCC
Q 026118 131 HGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDG 209 (243)
Q Consensus 131 ~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G 209 (243)
.+.|..+|+.+|+...... ......+... -.+..+|+ ...++.++.+|..++..-....+.....+.| |....+|
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~-t~g~lvf~-g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P--~ty~~~G 515 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDFPLWGGVLA-TAGDLVFY-GTLEGYFKAFDAKTGEELWKFKTGSGIVGPP--VTYEQDG 515 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCCCCCCcceE-ECCcEEEE-ECCCCeEEEEECCCCCEeEEEeCCCCceecC--EEEEeCC
Confidence 5679999999997765322 2221123222 24553444 4557889999987643222111111111223 5545689
Q ss_pred CEEEEEecC
Q 026118 210 SFWISIIKM 218 (243)
Q Consensus 210 ~lwv~~~~~ 218 (243)
++||....+
T Consensus 516 ~qYv~~~~G 524 (527)
T TIGR03075 516 KQYVAVLSG 524 (527)
T ss_pred EEEEEEEec
Confidence 999987654
No 200
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=95.29 E-value=1.3 Score=38.15 Aligned_cols=137 Identities=12% Similarity=0.074 Sum_probs=71.0
Q ss_pred CCCcEEEEc-cCC-ceeEecccCCccccceEEccCCCEEEEEeCCCc-EEEEecCCcEEEEeccCCCcccCCccEEEcCC
Q 026118 28 GDGWIKRMH-PNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVSEEGVTVLVSQFNGSQLRFANDVIEASD 104 (243)
Q Consensus 28 ~~~~i~~~~-~~g-~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~g-l~~~~~~g~~~~~~~~~~~~~~~~~~l~~d~~ 104 (243)
..|.|.... ..+ +...+....+....-+.+++..+.|.....++| |..+|.+|..++... ......-..+|++.|.
T Consensus 141 ~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~-~~~HsAP~~gicfsps 219 (673)
T KOG4378|consen 141 DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA-SEAHSAPCRGICFSPS 219 (673)
T ss_pred cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch-hhhccCCcCcceecCC
Confidence 445555554 222 233333322332213455655554333333455 455665663333321 1111123468899997
Q ss_pred CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecccccc-ceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118 105 GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA-NGVALSEDERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 105 G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
....++.-+ ..-+|+.||....+...-.. ...| ..++|.++|.+|.+. ..++.|+.||...
T Consensus 220 ne~l~vsVG----------------~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG-~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 220 NEALLVSVG----------------YDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAG-NSKGELIAYDMRS 281 (673)
T ss_pred ccceEEEec----------------ccceEEEeecccccccceee-ecCCcceeeecCCceEEEee-cCCceEEEEeccc
Confidence 654444322 23478999976433221111 1222 468999999866655 5678999999864
No 201
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=95.28 E-value=0.11 Score=28.23 Aligned_cols=42 Identities=17% Similarity=-0.027 Sum_probs=28.4
Q ss_pred CCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEEC
Q 026118 161 EDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLA 206 (243)
Q Consensus 161 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d 206 (243)
|++++||+++...++|..+|.... .....+. ....|.+|+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~--~~~~~i~--vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN--KVIATIP--VGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC--eEEEEEE--CCCCCceEEeC
Confidence 578889999998999999987532 2222221 23467777764
No 202
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.23 E-value=1.7 Score=37.04 Aligned_cols=150 Identities=13% Similarity=0.070 Sum_probs=75.6
Q ss_pred cccEEEcCCCcEEEEe-CCCcEEEEccCCc-eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEec
Q 026118 12 PEDVSVDGNGVLYTAT-GDGWIKRMHPNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQ 87 (243)
Q Consensus 12 p~~i~~d~~g~l~~~~-~~~~i~~~~~~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~ 87 (243)
..++.+-.||+|..+. ..|-|-.+|..-+ +.+.......|..-..|.++++.+++...++.+.++. .++ ..++.
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~-- 148 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAE-- 148 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEE--
Confidence 3456666777766544 4555666651111 1110111123332566777777646666567777776 444 32211
Q ss_pred cCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe-eccccccceEEEcCCCCE
Q 026118 88 FNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYFANGVALSEDERF 165 (243)
Q Consensus 88 ~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~~~~~gi~~~~dg~~ 165 (243)
..+ ...++.+..+.| .+++.++.+ ..+.|-.+|......... .....-...+.+-|.|.
T Consensus 149 l~~-htDYVR~g~~~~~~~hivvtGs-----------------YDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs- 209 (487)
T KOG0310|consen 149 LSG-HTDYVRCGDISPANDHIVVTGS-----------------YDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS- 209 (487)
T ss_pred ecC-CcceeEeeccccCCCeEEEecC-----------------CCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC-
Confidence 111 123566667766 456777732 234454455543321111 11112223455556666
Q ss_pred EEEEEcCCCeEEEEEeec
Q 026118 166 LVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 166 l~v~~~~~~~i~~~~~~~ 183 (243)
+.++ .+.+.+-.||..+
T Consensus 210 ~ias-AgGn~vkVWDl~~ 226 (487)
T KOG0310|consen 210 LIAS-AGGNSVKVWDLTT 226 (487)
T ss_pred EEEE-cCCCeEEEEEecC
Confidence 5555 5668899999873
No 203
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=95.22 E-value=1.5 Score=39.00 Aligned_cols=102 Identities=13% Similarity=0.134 Sum_probs=58.6
Q ss_pred ceEEccCCCEEEEEeCCCcEEEEecCC--cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCC
Q 026118 54 GLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPH 131 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~~~~gl~~~~~~g--~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~ 131 (243)
.++.-+++. |++......+++-..+ .+.+. + ....+.++++-+++.+.-+.. .
T Consensus 145 Av~~l~e~~--~vTgsaDKtIklWk~~~~l~tf~----g-HtD~VRgL~vl~~~~flScsN------------------D 199 (745)
T KOG0301|consen 145 AVASLPENT--YVTGSADKTIKLWKGGTLLKTFS----G-HTDCVRGLAVLDDSHFLSCSN------------------D 199 (745)
T ss_pred eeeecCCCc--EEeccCcceeeeccCCchhhhhc----c-chhheeeeEEecCCCeEeecC------------------C
Confidence 566667764 4555455555555333 33322 1 234678888888876665532 3
Q ss_pred ceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEe
Q 026118 132 GVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFL 181 (243)
Q Consensus 132 g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~ 181 (243)
|.|-+.+.++..+........+...|....++. +.++...++.+..++.
T Consensus 200 g~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 200 GSIRLWDLDGEVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKK 248 (745)
T ss_pred ceEEEEeccCceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeec
Confidence 566667776455555554445556666555555 6666566666666653
No 204
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.22 E-value=1.3 Score=40.83 Aligned_cols=150 Identities=13% Similarity=0.192 Sum_probs=84.4
Q ss_pred CcccEEEc-CCCcEEEEe--CCCcEEEEc-cCCc-eeEecccCCccccceEEcc------CCCEEEEEeCCCcEEEEe-c
Q 026118 11 HPEDVSVD-GNGVLYTAT--GDGWIKRMH-PNGT-WEDWHQVGSQSLLGLTTTK------ENNVIIVCDSQQGLLKVS-E 78 (243)
Q Consensus 11 ~p~~i~~d-~~g~l~~~~--~~~~i~~~~-~~g~-~~~~~~~~~~~~~~i~~~~------~g~l~~v~~~~~gl~~~~-~ 78 (243)
.|..+... .+..|.+-+ ....||++| ..|+ +..|......+...++.+. .... |++....+|+++| +
T Consensus 482 ~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~t-flGls~n~lfriDpR 560 (794)
T PF08553_consen 482 TPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQT-FLGLSDNSLFRIDPR 560 (794)
T ss_pred CcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCce-EEEECCCceEEeccC
Confidence 45544443 344555544 457899999 5666 4455443222221333321 1234 6887778999999 3
Q ss_pred -CCcEEEEe-ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecccccc-c
Q 026118 79 -EGVTVLVS-QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA-N 155 (243)
Q Consensus 79 -~g~~~~~~-~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~-~ 155 (243)
.+-+.+.. ...-...+...+++.+.+|.|-++.. .|.|-.||.-+.+.+....++..| .
T Consensus 561 ~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~------------------~G~IRLyd~~g~~AKT~lp~lG~pI~ 622 (794)
T PF08553_consen 561 LSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSN------------------KGDIRLYDRLGKRAKTALPGLGDPII 622 (794)
T ss_pred CCCCceeeccccccccCCCceEEEecCCceEEEEeC------------------CCcEEeecccchhhhhcCCCCCCCee
Confidence 34222111 11111223455788889999999853 356666776533333344444443 6
Q ss_pred eEEEcCCCCEEEEEEcCCCeEEEEEe
Q 026118 156 GVALSEDERFLVVCESWKFRCVKHFL 181 (243)
Q Consensus 156 gi~~~~dg~~l~v~~~~~~~i~~~~~ 181 (243)
+|.++.||+|+..+.. ..|..++.
T Consensus 623 ~iDvt~DGkwilaTc~--tyLlLi~t 646 (794)
T PF08553_consen 623 GIDVTADGKWILATCK--TYLLLIDT 646 (794)
T ss_pred EEEecCCCcEEEEeec--ceEEEEEE
Confidence 8999999998877643 35666654
No 205
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=1 Score=34.40 Aligned_cols=167 Identities=15% Similarity=0.096 Sum_probs=84.7
Q ss_pred CcEEEEe---CCCcEEEEc-cCCceeEecccC-Ccccc-ceEEccCCCEEEEEeCCCcE-EEEecCCcEEEEe-ccCCCc
Q 026118 21 GVLYTAT---GDGWIKRMH-PNGTWEDWHQVG-SQSLL-GLTTTKENNVIIVCDSQQGL-LKVSEEGVTVLVS-QFNGSQ 92 (243)
Q Consensus 21 g~l~~~~---~~~~i~~~~-~~g~~~~~~~~~-~~~~~-~i~~~~~g~l~~v~~~~~gl-~~~~~~g~~~~~~-~~~~~~ 92 (243)
|.++.++ ....|++.+ .+|++..-.... ....+ |+.. -|+.+|.-++..|+ +.+|.+-++.+.. .+++.
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~--~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge- 132 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK--LGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE- 132 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceee--ccceEEEEEeccceeEEEChHHhhhhcccccCCc-
Confidence 3566655 344677777 446654433221 11110 3333 24444888887775 4555332332222 23332
Q ss_pred ccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE-Ee---ecc--ccccceEEEcCCCCEE
Q 026118 93 LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS-LV---LDG--LYFANGVALSEDERFL 166 (243)
Q Consensus 93 ~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~-~~---~~~--~~~~~gi~~~~dg~~l 166 (243)
-.+++.|. -++|.++- +..++..||++-... .+ ..+ ...-|-+.+ -||. +
T Consensus 133 ---GWgLt~d~-~~LimsdG------------------satL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~-l 188 (262)
T COG3823 133 ---GWGLTSDD-KNLIMSDG------------------SATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGE-L 188 (262)
T ss_pred ---ceeeecCC-cceEeeCC------------------ceEEEecCHHHhhhcceEEEEECCeecccccceee-eccE-E
Confidence 23555443 35777752 246777788753221 11 111 122244444 3565 7
Q ss_pred EEEEcCCCeEEEEEeecCCCcceEEecc---------CCCCCCCceEECCCC-CEEEE
Q 026118 167 VVCESWKFRCVKHFLKVSGRTDREIFID---------NLPGGPDNVNLARDG-SFWIS 214 (243)
Q Consensus 167 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~d~~G-~lwv~ 214 (243)
|.--..+..|.+++++.+.....--... ....-++|||.++++ ++|+.
T Consensus 189 yANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT 246 (262)
T COG3823 189 YANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT 246 (262)
T ss_pred EEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence 7666666789999987653322211111 112257889999876 68874
No 206
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.10 E-value=1.9 Score=36.79 Aligned_cols=143 Identities=13% Similarity=0.036 Sum_probs=76.8
Q ss_pred cEEEcC-CCcEE-EEeCCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEeccC
Q 026118 14 DVSVDG-NGVLY-TATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQFN 89 (243)
Q Consensus 14 ~i~~d~-~g~l~-~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~~~ 89 (243)
+.++.+ ++.+. .|..+|.|..+|. ...........+.|.-.+.+-+.|.+ ++...+..+-.+| .+|.+.+.....
T Consensus 158 ~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~-iasAgGn~vkVWDl~~G~qll~~~~~ 236 (487)
T KOG0310|consen 158 CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSL-IASAGGNSVKVWDLTTGGQLLTSMFN 236 (487)
T ss_pred eeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCE-EEEcCCCeEEEEEecCCceehhhhhc
Confidence 344443 44444 4448888888882 11122222233555546667788888 5655555677777 545332222111
Q ss_pred CCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEE
Q 026118 90 GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC 169 (243)
Q Consensus 90 ~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~ 169 (243)
.+-.+.+++...+++-.++. ...+.|-.||..+-++..-..-..-.-+|+++|+++++++.
T Consensus 237 --H~KtVTcL~l~s~~~rLlS~-----------------sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 237 --HNKTVTCLRLASDSTRLLSG-----------------SLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred --ccceEEEEEeecCCceEeec-----------------ccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEe
Confidence 12245678887777655542 23456666775433332222222233578999999978777
Q ss_pred EcCCCeEE
Q 026118 170 ESWKFRCV 177 (243)
Q Consensus 170 ~~~~~~i~ 177 (243)
+.++.+.
T Consensus 298 -msnGlv~ 304 (487)
T KOG0310|consen 298 -MSNGLVS 304 (487)
T ss_pred -cccceee
Confidence 4444443
No 207
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.07 E-value=1.7 Score=36.25 Aligned_cols=83 Identities=12% Similarity=0.149 Sum_probs=54.4
Q ss_pred CceEEEEeCCCCeeEEeeccccccc-eEEEcCCCCEEEEEEcC----CCeEEEEEee-cCCCcceEEeccCCCCCCC-ce
Q 026118 131 HGVLLKYDPSTNQTSLVLDGLYFAN-GVALSEDERFLVVCESW----KFRCVKHFLK-VSGRTDREIFIDNLPGGPD-NV 203 (243)
Q Consensus 131 ~g~v~~~~~~~~~~~~~~~~~~~~~-gi~~~~dg~~l~v~~~~----~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~-~i 203 (243)
...||.++.+++..+.+..+..... -+.++++++.+|++... ...|++.+.+ + +..+.+.. ..... .+
T Consensus 259 ~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~--~~~~~~~~ 333 (353)
T PF00930_consen 259 YRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTC--EDGDHYSA 333 (353)
T ss_dssp SEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESST--TSSTTEEE
T ss_pred CcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccC--CCCCceEE
Confidence 3579999999888777765554443 47788999989987654 3478888776 3 23333321 12233 78
Q ss_pred EECCCCCEEEEEecC
Q 026118 204 NLARDGSFWISIIKM 218 (243)
Q Consensus 204 ~~d~~G~lwv~~~~~ 218 (243)
.++++|+.++-...+
T Consensus 334 ~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 334 SFSPDGKYYVDTYSG 348 (353)
T ss_dssp EE-TTSSEEEEEEES
T ss_pred EECCCCCEEEEEEcC
Confidence 999999988876654
No 208
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=95.04 E-value=1.1 Score=35.95 Aligned_cols=106 Identities=11% Similarity=0.046 Sum_probs=70.2
Q ss_pred ceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCC
Q 026118 54 GLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPH 131 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~ 131 (243)
.+.|++....|.++.+++-+..++ +.. .+..... . . .+-+.++.++-++|+++. .
T Consensus 18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~-~-~---plL~c~F~d~~~~~~G~~------------------d 74 (323)
T KOG1036|consen 18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH-G-A---PLLDCAFADESTIVTGGL------------------D 74 (323)
T ss_pred eEEEcCcCCcEEEEeccCcEEEEeccchhhhhheec-C-C---ceeeeeccCCceEEEecc------------------C
Confidence 677876655558888877677777 433 2221111 1 1 122446666778888853 4
Q ss_pred ceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118 132 GVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 132 g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
+.|-++|..+++...+.........|...+.-. ..|+..++..|-.+|+..
T Consensus 75 g~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 75 GQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRN 125 (323)
T ss_pred ceEEEEEecCCcceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccc
Confidence 689999999887666655555566788776555 677778889999999753
No 209
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=95.04 E-value=1.4 Score=34.94 Aligned_cols=187 Identities=11% Similarity=0.023 Sum_probs=101.4
Q ss_pred cCCccc-EEEcCCCcEEEEe-CCCcEEEEc-cCCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEE
Q 026118 9 VNHPED-VSVDGNGVLYTAT-GDGWIKRMH-PNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTV 83 (243)
Q Consensus 9 ~~~p~~-i~~d~~g~l~~~~-~~~~i~~~~-~~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~ 83 (243)
..+|-. |-+..+|.|.++. .+.....+= .+|... .+.-..+..+ ++.+|.+-+.+..+..+.-+..+| ++|. +
T Consensus 9 HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW-~~Did~~s~~liTGSAD~t~kLWDv~tGk-~ 86 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVW-CCDIDWDSKHLITGSADQTAKLWDVETGK-Q 86 (327)
T ss_pred CccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEE-EEEecCCcceeeeccccceeEEEEcCCCc-E
Confidence 555554 6667899877665 444433332 355432 2222223334 778877766634444444566777 7771 1
Q ss_pred EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCC-------CCe-eEEeeccccccc
Q 026118 84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS-------TNQ-TSLVLDGLYFAN 155 (243)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-------~~~-~~~~~~~~~~~~ 155 (243)
+..... ...+..+.++.+|++.+......-+ ....|..++.. ..+ +.++......++
T Consensus 87 la~~k~---~~~Vk~~~F~~~gn~~l~~tD~~mg------------~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 87 LATWKT---NSPVKRVDFSFGGNLILASTDKQMG------------YTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred EEEeec---CCeeEEEeeccCCcEEEEEehhhcC------------cceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 221111 1234567888899866654321110 12234444433 122 333344446677
Q ss_pred eEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc--CCCCCCCceEECCCCCEEEEEec
Q 026118 156 GVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID--NLPGGPDNVNLARDGSFWISIIK 217 (243)
Q Consensus 156 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~G~lwv~~~~ 217 (243)
.+.+++-+++|..+ -.++.|.+||...+. +.+.. .-....++|.+.++...+|....
T Consensus 152 ~a~Wg~l~~~ii~G-he~G~is~~da~~g~----~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 152 SALWGPLGETIIAG-HEDGSISIYDARTGK----ELVDSDEEHSSKINDLQFSRDRTYFITGSK 210 (327)
T ss_pred eeeecccCCEEEEe-cCCCcEEEEEcccCc----eeeechhhhccccccccccCCcceEEeccc
Confidence 88999999966655 467899999986531 11110 11124677888999888886543
No 210
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=95.03 E-value=1.5 Score=35.53 Aligned_cols=111 Identities=11% Similarity=-0.010 Sum_probs=62.8
Q ss_pred ceEEccCCCEEEEEeCCCcEE-EEe-cCC--cEEEEeccCCCcccCCccEEEcCCC--cEEEEeCCCCCCcccccccccc
Q 026118 54 GLTTTKENNVIIVCDSQQGLL-KVS-EEG--VTVLVSQFNGSQLRFANDVIEASDG--SLYFTVSSTKFTPAEYYLDLVS 127 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~~~~gl~-~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~G--~l~v~~~~~~~~~~~~~~~~~~ 127 (243)
...|.+||+. .+.....|.+ .++ .++ ...+..... .-.++.+..-|.. .+.+++
T Consensus 353 ~a~ft~dG~~-iisaSsDgtvkvW~~KtteC~~Tfk~~~~---d~~vnsv~~~PKnpeh~iVCN---------------- 412 (508)
T KOG0275|consen 353 EATFTDDGHH-IISASSDGTVKVWHGKTTECLSTFKPLGT---DYPVNSVILLPKNPEHFIVCN---------------- 412 (508)
T ss_pred ceEEcCCCCe-EEEecCCccEEEecCcchhhhhhccCCCC---cccceeEEEcCCCCceEEEEc----------------
Confidence 5678899998 4444445544 444 443 222221111 1123455555533 455664
Q ss_pred cCCCceEEEEeCCCCeeEEeecc----ccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcc
Q 026118 128 GEPHGVLLKYDPSTNQTSLVLDG----LYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTD 188 (243)
Q Consensus 128 ~~~~g~v~~~~~~~~~~~~~~~~----~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~ 188 (243)
.++.||..+..+.-++.+..+ .... ..+++|.|.|+|... .+..+|.|....+.+.+
T Consensus 413 --rsntv~imn~qGQvVrsfsSGkREgGdFi-~~~lSpkGewiYcig-ED~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 413 --RSNTVYIMNMQGQVVRSFSSGKREGGDFI-NAILSPKGEWIYCIG-EDGVLYCFSVLSGKLER 473 (508)
T ss_pred --CCCeEEEEeccceEEeeeccCCccCCceE-EEEecCCCcEEEEEc-cCcEEEEEEeecCceee
Confidence 235788888884444444322 1222 357799999999885 46889999887655443
No 211
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=94.99 E-value=1.8 Score=38.09 Aligned_cols=104 Identities=12% Similarity=0.042 Sum_probs=58.5
Q ss_pred CccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE-EeeccccccceEEEcCCCCEEEEEEcCCC
Q 026118 96 ANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS-LVLDGLYFANGVALSEDERFLVVCESWKF 174 (243)
Q Consensus 96 ~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~-~~~~~~~~~~gi~~~~dg~~l~v~~~~~~ 174 (243)
+..|....+|.++.+.+. ...+-+|+..+......+ ++......++...|+|-.-+|+|+.. .
T Consensus 524 i~~vtWHrkGDYlatV~~--------------~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq--~ 587 (733)
T KOG0650|consen 524 IRQVTWHRKGDYLATVMP--------------DSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ--R 587 (733)
T ss_pred cceeeeecCCceEEEecc--------------CCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec--c
Confidence 334555566666655332 112335666666533222 22234456788999998888999975 5
Q ss_pred eEEEEEeecCCCcceEEeccCCC--CCCCceEECCCC-CEEEEEecCCc
Q 026118 175 RCVKHFLKVSGRTDREIFIDNLP--GGPDNVNLARDG-SFWISIIKMDP 220 (243)
Q Consensus 175 ~i~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~d~~G-~lwv~~~~~~~ 220 (243)
.|..||+....+ .....+ ...+.|++++.| +|.+++....-
T Consensus 588 ~vRiYdL~kqel-----vKkL~tg~kwiS~msihp~GDnli~gs~d~k~ 631 (733)
T KOG0650|consen 588 SVRIYDLSKQEL-----VKKLLTGSKWISSMSIHPNGDNLILGSYDKKM 631 (733)
T ss_pred ceEEEehhHHHH-----HHHHhcCCeeeeeeeecCCCCeEEEecCCCee
Confidence 677788754211 111111 135667777766 47777666553
No 212
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=94.97 E-value=2.3 Score=38.75 Aligned_cols=147 Identities=16% Similarity=0.105 Sum_probs=83.2
Q ss_pred cccEEEcCCCcEEEEeCCCcEEEEc-cCCceeEeccc-----CCccccceEEccCCCEEEEEeCCCcEEEEe--c-CC--
Q 026118 12 PEDVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWHQV-----GSQSLLGLTTTKENNVIIVCDSQQGLLKVS--E-EG-- 80 (243)
Q Consensus 12 p~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~-----~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~--~-~g-- 80 (243)
|..|+....|.......+-.++.+. +.++ +..... ...+....++++.++.+.+++..+.|..+. . ++
T Consensus 163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred CccEEEcCCceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 6777776766554433445566665 3322 111000 001112578889998855555445565554 2 12
Q ss_pred cE-EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccc-cceEE
Q 026118 81 VT-VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF-ANGVA 158 (243)
Q Consensus 81 ~~-~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~-~~gi~ 158 (243)
.. .... . .+..++++.+.++|...++. ...+.+.+...++++ +.+.+.+.. ...++
T Consensus 242 ~t~t~lH-W---H~~~V~~L~fS~~G~~LlSG-----------------G~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~ 299 (792)
T KOG1963|consen 242 ETCTLLH-W---HHDEVNSLSFSSDGAYLLSG-----------------GREGVLVLWQLETGK-KQFLPRLGSPILHIV 299 (792)
T ss_pred ccceEEE-e---cccccceeEEecCCceEeec-----------------ccceEEEEEeecCCC-cccccccCCeeEEEE
Confidence 11 1111 1 12457789999999766651 123455566666666 455544443 36799
Q ss_pred EcCCCCEEEEEEcCCCeEEEEEee
Q 026118 159 LSEDERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 159 ~~~dg~~l~v~~~~~~~i~~~~~~ 182 (243)
++||+. +|..-..+++|..+...
T Consensus 300 vS~ds~-~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 300 VSPDSD-LYSLVLEDNQIHLIKAS 322 (792)
T ss_pred EcCCCC-eEEEEecCceEEEEecc
Confidence 999999 77666778899888763
No 213
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=94.96 E-value=0.087 Score=29.04 Aligned_cols=40 Identities=13% Similarity=0.049 Sum_probs=29.5
Q ss_pred EEEEEEcCCC-eEEEEEeecCCCcceEEeccCCCCCCCceEECC
Q 026118 165 FLVVCESWKF-RCVKHFLKVSGRTDREIFIDNLPGGPDNVNLAR 207 (243)
Q Consensus 165 ~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~ 207 (243)
.||+++.... .|.+.+.++. +.+++....-..|.+|++|.
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs---~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGS---NRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTTTEEEEEEETTST---SEEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCC---CeEEEEECCCCCcCEEEECC
Confidence 4999999888 8888888773 34444444455799999874
No 214
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=94.91 E-value=1.4 Score=38.54 Aligned_cols=114 Identities=15% Similarity=0.193 Sum_probs=58.0
Q ss_pred EEEcCCCcEEEEeCCCcEEEEccCCceeE-ecccCCc---cccceEEccCCCEEEEEeC-------------CCcEEEEe
Q 026118 15 VSVDGNGVLYTATGDGWIKRMHPNGTWED-WHQVGSQ---SLLGLTTTKENNVIIVCDS-------------QQGLLKVS 77 (243)
Q Consensus 15 i~~d~~g~l~~~~~~~~i~~~~~~g~~~~-~~~~~~~---~~~~i~~~~~g~l~~v~~~-------------~~gl~~~~ 77 (243)
+...++|.++++.. ..++.+|..|++.. +..+... .+ .+...++|++|+.+.. ...|+.+|
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HH-D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHH-DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S--EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCccccccc-ccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 44557787777655 67888887777443 2222211 45 7888899998666651 23588888
Q ss_pred cCC-cEE-EEe--ccCC--------------------CcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCc
Q 026118 78 EEG-VTV-LVS--QFNG--------------------SQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHG 132 (243)
Q Consensus 78 ~~g-~~~-~~~--~~~~--------------------~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g 132 (243)
++| +.. +.. .... ..-.+.+++..++ ++.|.++. +...
T Consensus 231 ~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSs-----------------R~~s 293 (477)
T PF05935_consen 231 PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSS-----------------RHQS 293 (477)
T ss_dssp TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEE-----------------TTT-
T ss_pred CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEc-----------------Ccce
Confidence 667 332 221 1100 0113567888888 67787774 2334
Q ss_pred eEEEEeCCCCeeEEe
Q 026118 133 VLLKYDPSTNQTSLV 147 (243)
Q Consensus 133 ~v~~~~~~~~~~~~~ 147 (243)
.|+++|..++++..+
T Consensus 294 ~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 294 AVIKIDYRTGKIKWI 308 (477)
T ss_dssp EEEEEE-TTS-EEEE
T ss_pred EEEEEECCCCcEEEE
Confidence 788888777776654
No 215
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=94.57 E-value=1.8 Score=34.23 Aligned_cols=125 Identities=12% Similarity=0.087 Sum_probs=67.9
Q ss_pred eCCCcEEEEc-cCCceeE-ecccCCccccceEEccCCCEEEEEeCC-----CcEEEEe-cCC------cEEEEeccCCCc
Q 026118 27 TGDGWIKRMH-PNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQ-----QGLLKVS-EEG------VTVLVSQFNGSQ 92 (243)
Q Consensus 27 ~~~~~i~~~~-~~g~~~~-~~~~~~~~~~~i~~~~~g~l~~v~~~~-----~gl~~~~-~~g------~~~~~~~~~~~~ 92 (243)
..+..+..+| +.|+... +.. +.+...+.|+.+|+++.+++.. .-|..++ ++. -.++...+..
T Consensus 71 SAD~t~kLWDv~tGk~la~~k~--~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~-- 146 (327)
T KOG0643|consen 71 SADQTAKLWDVETGKQLATWKT--NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP-- 146 (327)
T ss_pred cccceeEEEEcCCCcEEEEeec--CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC--
Confidence 3445556666 5555432 322 3344478899999984343321 1244555 311 1112111111
Q ss_pred ccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-ee-ccccccceEEEcCCCCEEEEEE
Q 026118 93 LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VL-DGLYFANGVALSEDERFLVVCE 170 (243)
Q Consensus 93 ~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-~~-~~~~~~~gi~~~~dg~~l~v~~ 170 (243)
-..+..+..++-+...++. -..|.|-+||..+|.... .. ......+.|.+++|.. .+++.
T Consensus 147 ~skit~a~Wg~l~~~ii~G-----------------he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~ 208 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIAG-----------------HEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITG 208 (327)
T ss_pred ccceeeeeecccCCEEEEe-----------------cCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEec
Confidence 1345556778877766662 235789999998764322 21 2234678899999988 67665
Q ss_pred cCC
Q 026118 171 SWK 173 (243)
Q Consensus 171 ~~~ 173 (243)
+.+
T Consensus 209 s~D 211 (327)
T KOG0643|consen 209 SKD 211 (327)
T ss_pred ccC
Confidence 543
No 216
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.47 E-value=2.1 Score=34.49 Aligned_cols=176 Identities=13% Similarity=0.120 Sum_probs=88.3
Q ss_pred CCcEEEEeCCCcEEEEc---cCCc-eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcc
Q 026118 20 NGVLYTATGDGWIKRMH---PNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQL 93 (243)
Q Consensus 20 ~g~l~~~~~~~~i~~~~---~~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~ 93 (243)
...+|++++..+++.+| |+.. ...+....+... +..+ .|+.+||++...|++.+| .+- ..++........
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyay-gv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~- 171 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAY-GVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPG- 171 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEE-EEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCC-
Confidence 44688888777888887 2221 111111112223 4444 488889999888999998 433 222222111110
Q ss_pred cCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc---ccccceEEEcCCCCEEEEEE
Q 026118 94 RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG---LYFANGVALSEDERFLVVCE 170 (243)
Q Consensus 94 ~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~---~~~~~gi~~~~dg~~l~v~~ 170 (243)
.-..+++++. ...|++.. .++|-.+|-....--.+... .....+..++++ +.|+..
T Consensus 172 ~d~~~v~ISG-n~AYvA~~------------------d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vv 230 (370)
T COG5276 172 GDTHDVAISG-NYAYVAWR------------------DGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVV 230 (370)
T ss_pred CCceeEEEec-CeEEEEEe------------------CCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC--eeEEEE
Confidence 1113455542 35677642 24566666553221122211 113344554433 477765
Q ss_pred cCCCeEEEEEeecCCCcceEEeccCCCCCCCce---EECCCCCEEEEEecCCchhhh
Q 026118 171 SWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNV---NLARDGSFWISIIKMDPKGIQ 224 (243)
Q Consensus 171 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~d~~G~lwv~~~~~~~~~~~ 224 (243)
- +..+...+.++. +..+++..-.+.-|.++ .+ ++...|++....+....+
T Consensus 231 y-~egvlivd~s~~--ssp~~~gsyet~~p~~~s~v~V-s~~~~Yvadga~gl~~id 283 (370)
T COG5276 231 Y-DEGVLIVDVSGP--SSPTVFGSYETSNPVSISTVPV-SGEYAYVADGAKGLPIID 283 (370)
T ss_pred c-ccceEEEecCCC--CCceEeeccccCCcccccceec-ccceeeeeccccCceeEe
Confidence 3 456777777664 33344432233334443 33 344688888776654443
No 217
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.46 E-value=3.5 Score=37.04 Aligned_cols=178 Identities=11% Similarity=0.043 Sum_probs=89.8
Q ss_pred cEEEEeCCCcEEEEccCCceeEeccc---CCccccceEEccCCCEE-EEEe-------CCCcEEEEecCC-cEEEEeccC
Q 026118 22 VLYTATGDGWIKRMHPNGTWEDWHQV---GSQSLLGLTTTKENNVI-IVCD-------SQQGLLKVSEEG-VTVLVSQFN 89 (243)
Q Consensus 22 ~l~~~~~~~~i~~~~~~g~~~~~~~~---~~~~~~~i~~~~~g~l~-~v~~-------~~~gl~~~~~~g-~~~~~~~~~ 89 (243)
.+|+- .+|.+.+++.++ .....-. ..... ..+++++|+.+ |+.. ....|+..+..+ .+.+. .
T Consensus 322 ~~~~v-~~G~l~~~~~~~-~~pv~g~~g~~~~vs-spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt---~ 395 (591)
T PRK13616 322 GLHAL-VDGSLVSVDGQG-VTPVPGAFGQMGNIT-SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL---E 395 (591)
T ss_pred cceEE-ECCeEEEecCCC-eeeCCCccccccCcc-cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee---c
Confidence 45543 367777775322 2222111 11233 67888999863 3331 112466655333 33332 1
Q ss_pred CCcccCCccEEEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEE
Q 026118 90 GSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVV 168 (243)
Q Consensus 90 ~~~~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v 168 (243)
+.....| .++++| .+|+...+... .-+......+.++.+..++++.+. .-...+..+.+++||+.+.+
T Consensus 396 g~~~t~P---sWspDG~~lw~v~dg~~~------~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~ 464 (591)
T PRK13616 396 GHSLTRP---SWSLDADAVWVVVDGNTV------VRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAM 464 (591)
T ss_pred CCCCCCc---eECCCCCceEEEecCcce------EEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEE
Confidence 2223334 789985 58887432100 000111234567777666665543 11234778999999998877
Q ss_pred EEcCCCeEEEEEe---ecC--CCcceEEeccCCCCCCCceEECCCCCEEEEEecC
Q 026118 169 CESWKFRCVKHFL---KVS--GRTDREIFIDNLPGGPDNVNLARDGSFWISIIKM 218 (243)
Q Consensus 169 ~~~~~~~i~~~~~---~~~--~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~ 218 (243)
... ++|+..-+ .++ .+.....+.......+..+..-.++.|.++....
T Consensus 465 i~~--g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~ 517 (591)
T PRK13616 465 IIG--GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDP 517 (591)
T ss_pred EEC--CEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCC
Confidence 643 56776332 222 1222222322222234557777788888776543
No 218
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=94.42 E-value=2.8 Score=35.63 Aligned_cols=146 Identities=12% Similarity=0.118 Sum_probs=75.2
Q ss_pred ccEEEcCCCcEEE-EeCCCcEEEEc------c--CCceeEecccC--CccccceEEc---cCCCEEEEEeCCCcEEEEe-
Q 026118 13 EDVSVDGNGVLYT-ATGDGWIKRMH------P--NGTWEDWHQVG--SQSLLGLTTT---KENNVIIVCDSQQGLLKVS- 77 (243)
Q Consensus 13 ~~i~~d~~g~l~~-~~~~~~i~~~~------~--~g~~~~~~~~~--~~~~~~i~~~---~~g~l~~v~~~~~gl~~~~- 77 (243)
-+|.+..||.+++ +..||.|+.+. + ++.++.+..-. ..+.+.|..+ .+.++ |.+..+.-+..++
T Consensus 127 TcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl-~TaS~D~t~k~wdl 205 (476)
T KOG0646|consen 127 TCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARL-YTASEDRTIKLWDL 205 (476)
T ss_pred eEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceE-EEecCCceEEEEEe
Confidence 3566777775554 44788887765 1 22222211100 1122244443 33455 6666443344455
Q ss_pred cCCcEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeC-----------------
Q 026118 78 EEGVTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDP----------------- 139 (243)
Q Consensus 78 ~~g~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~----------------- 139 (243)
..|...+.... ...+.++++||.++ +|+++.. |.|+..+.
T Consensus 206 S~g~LLlti~f----p~si~av~lDpae~~~yiGt~~------------------G~I~~~~~~~~~~~~~~v~~k~~~~ 263 (476)
T KOG0646|consen 206 SLGVLLLTITF----PSSIKAVALDPAERVVYIGTEE------------------GKIFQNLLFKLSGQSAGVNQKGRHE 263 (476)
T ss_pred ccceeeEEEec----CCcceeEEEcccccEEEecCCc------------------ceEEeeehhcCCccccccccccccc
Confidence 44521111111 13567889999765 7776543 23333222
Q ss_pred CCCeeEEeecccc--ccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118 140 STNQTSLVLDGLY--FANGVALSEDERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 140 ~~~~~~~~~~~~~--~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 182 (243)
...+...+..... ....++++-||. |.++...++.+..+|+.
T Consensus 264 ~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 264 ENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIY 307 (476)
T ss_pred ccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecc
Confidence 1111222222222 456799999999 77777778899998875
No 219
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.34 E-value=0.32 Score=26.30 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=21.3
Q ss_pred CceEEEEeCCCCeeEEeeccccccceEEEc
Q 026118 131 HGVLLKYDPSTNQTSLVLDGLYFANGVALS 160 (243)
Q Consensus 131 ~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~ 160 (243)
.+.|..+|+.+++..........|.+|+++
T Consensus 13 ~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 13 SNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 457899999877665544445678888764
No 220
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=94.15 E-value=0.71 Score=37.37 Aligned_cols=150 Identities=11% Similarity=0.121 Sum_probs=83.7
Q ss_pred CCcccEEEcCCCcEEEE-eCCCcEEEEc-cCCceeEecccC--------CccccceEEccCCCEEEEEeCCCcEEEEe-c
Q 026118 10 NHPEDVSVDGNGVLYTA-TGDGWIKRMH-PNGTWEDWHQVG--------SQSLLGLTTTKENNVIIVCDSQQGLLKVS-E 78 (243)
Q Consensus 10 ~~p~~i~~d~~g~l~~~-~~~~~i~~~~-~~g~~~~~~~~~--------~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~ 78 (243)
..+++..+.|||...++ .-+|-|-.++ .+|+++.-.... ..+..+|.|+.|-.++..+..++.+-.+. .
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence 67999999999975554 4778888888 566654321110 11222778888877723333222333333 5
Q ss_pred CC--cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEE-eCCCCeeE-Eeecccccc
Q 026118 79 EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKY-DPSTNQTS-LVLDGLYFA 154 (243)
Q Consensus 79 ~g--~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~-~~~~~~~~-~~~~~~~~~ 154 (243)
+| .+.+... ....+.++.++.|+.-..+.+. ....|+ ..++|+.. .+-......
T Consensus 294 tG~ClRrFdrA----HtkGvt~l~FSrD~SqiLS~sf------------------D~tvRiHGlKSGK~LKEfrGHsSyv 351 (508)
T KOG0275|consen 294 TGQCLRRFDRA----HTKGVTCLSFSRDNSQILSASF------------------DQTVRIHGLKSGKCLKEFRGHSSYV 351 (508)
T ss_pred cchHHHHhhhh----hccCeeEEEEccCcchhhcccc------------------cceEEEeccccchhHHHhcCccccc
Confidence 55 3333211 1124567788888765554321 122232 33334322 222334566
Q ss_pred ceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118 155 NGVALSEDERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 155 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 182 (243)
+-..|++||..+.-+ ..++.|-.++..
T Consensus 352 n~a~ft~dG~~iisa-SsDgtvkvW~~K 378 (508)
T KOG0275|consen 352 NEATFTDDGHHIISA-SSDGTVKVWHGK 378 (508)
T ss_pred cceEEcCCCCeEEEe-cCCccEEEecCc
Confidence 778999999965544 566788877754
No 221
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.09 E-value=1.5 Score=39.29 Aligned_cols=109 Identities=11% Similarity=0.046 Sum_probs=67.7
Q ss_pred eEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCc
Q 026118 55 LTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHG 132 (243)
Q Consensus 55 i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g 132 (243)
++++++|+.||. .....|..++ .++ .. +.. ..........++++++|+.+.++-.. ..
T Consensus 25 ~~~s~nG~~L~t-~~~d~Vi~idv~t~~~~-l~s-~~~ed~d~ita~~l~~d~~~L~~a~r-----------------s~ 84 (775)
T KOG0319|consen 25 VAWSSNGQHLYT-ACGDRVIIIDVATGSIA-LPS-GSNEDEDEITALALTPDEEVLVTASR-----------------SQ 84 (775)
T ss_pred eeECCCCCEEEE-ecCceEEEEEccCCcee-ccc-CCccchhhhheeeecCCccEEEEeec-----------------cc
Confidence 678999998444 4456788888 777 32 221 11122245567889999876665322 11
Q ss_pred eEEEEeCCCCeeEEeecc-ccc-cceEEEcCCCCEEEEEEcCCCeEEEEEeecC
Q 026118 133 VLLKYDPSTNQTSLVLDG-LYF-ANGVALSEDERFLVVCESWKFRCVKHFLKVS 184 (243)
Q Consensus 133 ~v~~~~~~~~~~~~~~~~-~~~-~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~ 184 (243)
-+-.+...++++.+.... ... ...|+|+|.+. |..+....+.+-++|+..+
T Consensus 85 llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~-LlAtggaD~~v~VWdi~~~ 137 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGT-LLATGGADGRVKVWDIKNG 137 (775)
T ss_pred eEEEEEcccchHhHhHhhccCCCeEEEEEcCCCc-eEEeccccceEEEEEeeCC
Confidence 233355556666554433 122 35799999995 7777667788999998763
No 222
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=94.08 E-value=2.4 Score=33.63 Aligned_cols=111 Identities=13% Similarity=0.131 Sum_probs=64.9
Q ss_pred ceEEccC-CCEEEEEeCCCcEEEEecC-C-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCC
Q 026118 54 GLTTTKE-NNVIIVCDSQQGLLKVSEE-G-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEP 130 (243)
Q Consensus 54 ~i~~~~~-g~l~~v~~~~~gl~~~~~~-g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~ 130 (243)
.++.+|. |.+|+.+...+.|..++.. + .-.............+..++..|.|++..+-+-
T Consensus 19 ~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF----------------- 81 (312)
T KOG0645|consen 19 SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF----------------- 81 (312)
T ss_pred EEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec-----------------
Confidence 6777776 7764555544445555533 3 111122233334567889999999996655321
Q ss_pred CceEEEEeCCCCeeEEee--c-cccccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118 131 HGVLLKYDPSTNQTSLVL--D-GLYFANGVALSEDERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 131 ~g~v~~~~~~~~~~~~~~--~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 182 (243)
...+..+....++++.+. + ......+++|+++|++|-.+ ..+.+|+.+..+
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATC-SRDKSVWiWe~d 135 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATC-SRDKSVWIWEID 135 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEe-eCCCeEEEEEec
Confidence 123333333335555442 2 23456789999999977666 456788887765
No 223
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=94.01 E-value=3.6 Score=37.56 Aligned_cols=144 Identities=17% Similarity=0.185 Sum_probs=76.7
Q ss_pred cEEEcCCCcEEEE-eCCCcEEEEccCC--------ceeEecccCCccccceEEccCCCEEEEEeCCCcEE-EEe-cCCcE
Q 026118 14 DVSVDGNGVLYTA-TGDGWIKRMHPNG--------TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLL-KVS-EEGVT 82 (243)
Q Consensus 14 ~i~~d~~g~l~~~-~~~~~i~~~~~~g--------~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~-~~~-~~g~~ 82 (243)
+.+..++++...+ ..+|+|+.+..-+ +...|.. .... +++++.+|..|+.+.. .+++ ++. .++-+
T Consensus 210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~--~~V~-~L~fS~~G~~LlSGG~-E~VLv~Wq~~T~~k 285 (792)
T KOG1963|consen 210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH--DEVN-SLSFSSDGAYLLSGGR-EGVLVLWQLETGKK 285 (792)
T ss_pred eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc--cccc-eeEEecCCceEeeccc-ceEEEEEeecCCCc
Confidence 3555677765544 4678888775211 1222332 2334 8999999998676654 4544 444 44433
Q ss_pred EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec------------c
Q 026118 83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD------------G 150 (243)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~------------~ 150 (243)
++.... ...+.++.++||+++|..-.. ++.|..+...+-+...... .
T Consensus 286 qfLPRL----gs~I~~i~vS~ds~~~sl~~~-----------------DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~ 344 (792)
T KOG1963|consen 286 QFLPRL----GSPILHIVVSPDSDLYSLVLE-----------------DNQIHLIKASDLEIKSTISGIKPPTPSTKTRP 344 (792)
T ss_pred cccccc----CCeeEEEEEcCCCCeEEEEec-----------------CceEEEEeccchhhhhhccCccCCCccccccc
Confidence 332211 123457789999988865322 2344444442222211110 1
Q ss_pred ccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118 151 LYFANGVALSEDERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 151 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
...+.++.++|--+ ..+-+...+.|--||+..
T Consensus 345 ~~l~t~~~idpr~~-~~vln~~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 345 QSLTTGVSIDPRTN-SLVLNGHPGHVQFYDLYT 376 (792)
T ss_pred cccceeEEEcCCCC-ceeecCCCceEEEEeccc
Confidence 23456788888444 233334556777777754
No 224
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.96 E-value=5.3 Score=37.10 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=37.1
Q ss_pred CCcEEEEeCCCcEEEEc-cCCceeEecccCCc--------cccceEEc-----------------cCCCEEEEEeCCCcE
Q 026118 20 NGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQ--------SLLGLTTT-----------------KENNVIIVCDSQQGL 73 (243)
Q Consensus 20 ~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~--------~~~~i~~~-----------------~~g~l~~v~~~~~gl 73 (243)
++.||+++..+.|+.+| .+|+..-....... ...|+++- .++++ |+.+.+..|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV-~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRI-ILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEE-EEecCCCeE
Confidence 78999999888999999 56764432111100 01122221 12345 888877789
Q ss_pred EEEe-cCC
Q 026118 74 LKVS-EEG 80 (243)
Q Consensus 74 ~~~~-~~g 80 (243)
+.+| .+|
T Consensus 273 iALDA~TG 280 (764)
T TIGR03074 273 IALDADTG 280 (764)
T ss_pred EEEECCCC
Confidence 9999 777
No 225
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=93.93 E-value=4.8 Score=36.53 Aligned_cols=142 Identities=15% Similarity=0.063 Sum_probs=78.8
Q ss_pred cEEEcCCCcEEEEeCCCcEEEEccC--CceeEecccCCccccceEEccC-CCEEEEEeCCCc-EEEEe-cCC-cEEEEec
Q 026118 14 DVSVDGNGVLYTATGDGWIKRMHPN--GTWEDWHQVGSQSLLGLTTTKE-NNVIIVCDSQQG-LLKVS-EEG-VTVLVSQ 87 (243)
Q Consensus 14 ~i~~d~~g~l~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~~i~~~~~-g~l~~v~~~~~g-l~~~~-~~g-~~~~~~~ 87 (243)
.|.+..++.|..+.-|..|..|++. .....|.- ..... +++|.|- .++ |+...-++ +-.++ .+. +....
T Consensus 374 DlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~H-ndfVT-cVaFnPvDDry-FiSGSLD~KvRiWsI~d~~Vv~W~-- 448 (712)
T KOG0283|consen 374 DLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSH-NDFVT-CVAFNPVDDRY-FISGSLDGKVRLWSISDKKVVDWN-- 448 (712)
T ss_pred ecccccCCeeEeccccccEEeecCCCcceeeEEec-CCeeE-EEEecccCCCc-EeecccccceEEeecCcCeeEeeh--
Confidence 4555566667766666667777643 33444432 13344 8999974 455 55443334 44444 443 22111
Q ss_pred cCCCcccCCccEEEcCCCcEEE-EeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee----c-----cccccceE
Q 026118 88 FNGSQLRFANDVIEASDGSLYF-TVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL----D-----GLYFANGV 157 (243)
Q Consensus 88 ~~~~~~~~~~~l~~d~~G~l~v-~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~----~-----~~~~~~gi 157 (243)
+- ...+..+++.|||...+ ++ ..|....|+....++..-. . ......|+
T Consensus 449 -Dl--~~lITAvcy~PdGk~avIGt------------------~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~ 507 (712)
T KOG0283|consen 449 -DL--RDLITAVCYSPDGKGAVIGT------------------FNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGL 507 (712)
T ss_pred -hh--hhhheeEEeccCCceEEEEE------------------eccEEEEEEccCCeEEEeeeEeeccCccccCceeeee
Confidence 11 13466789999998554 43 2355666777654443211 0 01246788
Q ss_pred EEcCCC-CEEEEEEcCCCeEEEEEee
Q 026118 158 ALSEDE-RFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 158 ~~~~dg-~~l~v~~~~~~~i~~~~~~ 182 (243)
.+.|.. .-+.|+ ..+.+|..||..
T Consensus 508 Q~~p~~~~~vLVT-SnDSrIRI~d~~ 532 (712)
T KOG0283|consen 508 QFFPGDPDEVLVT-SNDSRIRIYDGR 532 (712)
T ss_pred EecCCCCCeEEEe-cCCCceEEEecc
Confidence 887632 236666 456889999874
No 226
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=93.90 E-value=3.3 Score=34.61 Aligned_cols=137 Identities=13% Similarity=0.142 Sum_probs=70.5
Q ss_pred CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcC
Q 026118 28 GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEAS 103 (243)
Q Consensus 28 ~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~ 103 (243)
.+..|..++ .+|....-........ ++.++.||.+ ++++.. +.|..+| .+| .........| ..+..+.+-.
T Consensus 152 ~Dn~v~iWnv~tgeali~l~hpd~i~-S~sfn~dGs~-l~TtckDKkvRv~dpr~~~~v~e~~~heG---~k~~Raifl~ 226 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLDHPDMVY-SMSFNRDGSL-LCTTCKDKKVRVIDPRRGTVVSEGVAHEG---AKPARAIFLA 226 (472)
T ss_pred CCceEEEEeccCCceeeecCCCCeEE-EEEeccCCce-eeeecccceeEEEcCCCCcEeeecccccC---CCcceeEEec
Confidence 455666666 3343221122223345 8899999998 565544 5677777 566 3222211222 2233445667
Q ss_pred CCcEEEEeCCCCCCcccccccccccCCCc-eEEEEeCCCCeeEEeeccccccceE---EEcCCCCEEEEEEcCCCeEEEE
Q 026118 104 DGSLYFTVSSTKFTPAEYYLDLVSGEPHG-VLLKYDPSTNQTSLVLDGLYFANGV---ALSEDERFLVVCESWKFRCVKH 179 (243)
Q Consensus 104 ~G~l~v~~~~~~~~~~~~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~~~~~~gi---~~~~dg~~l~v~~~~~~~i~~~ 179 (243)
+|.++.+..+ +.+. .+...|+++-+.-.....+...+|+ -+|+|.+.+|++.-+++.|.-|
T Consensus 227 ~g~i~tTGfs---------------r~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYy 291 (472)
T KOG0303|consen 227 SGKIFTTGFS---------------RMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYF 291 (472)
T ss_pred cCceeeeccc---------------cccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEE
Confidence 7775544221 1111 2333444422111112223334443 4578888899998888887777
Q ss_pred EeecC
Q 026118 180 FLKVS 184 (243)
Q Consensus 180 ~~~~~ 184 (243)
.+..+
T Consensus 292 Eit~d 296 (472)
T KOG0303|consen 292 EITNE 296 (472)
T ss_pred EecCC
Confidence 66543
No 227
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.87 E-value=3.8 Score=35.21 Aligned_cols=71 Identities=18% Similarity=0.105 Sum_probs=47.7
Q ss_pred EEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCC--CeE
Q 026118 100 IEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK--FRC 176 (243)
Q Consensus 100 ~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~--~~i 176 (243)
.+.|||+ +.++... ...-.||.+|..+++..++.........-.++|||++++++.... ..|
T Consensus 244 ~fspDG~~l~f~~~r---------------dg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I 308 (425)
T COG0823 244 AFSPDGSKLAFSSSR---------------DGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQI 308 (425)
T ss_pred cCCCCCCEEEEEECC---------------CCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcce
Confidence 6788886 4444322 123469999999887666554444444568899999998876543 468
Q ss_pred EEEEeecCC
Q 026118 177 VKHFLKVSG 185 (243)
Q Consensus 177 ~~~~~~~~~ 185 (243)
++++.++..
T Consensus 309 ~~~~~~g~~ 317 (425)
T COG0823 309 YLYDLEGSQ 317 (425)
T ss_pred EEECCCCCc
Confidence 888887643
No 228
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=93.76 E-value=2.5 Score=34.45 Aligned_cols=153 Identities=10% Similarity=0.041 Sum_probs=81.4
Q ss_pred CCcccEEEcCCCc-EEEEeCCCcEEEEcc--CCceeE-e---cc---cCCccccceEEccCCC-EEEEEeCCCcEEEEec
Q 026118 10 NHPEDVSVDGNGV-LYTATGDGWIKRMHP--NGTWED-W---HQ---VGSQSLLGLTTTKENN-VIIVCDSQQGLLKVSE 78 (243)
Q Consensus 10 ~~p~~i~~d~~g~-l~~~~~~~~i~~~~~--~g~~~~-~---~~---~~~~~~~~i~~~~~g~-l~~v~~~~~gl~~~~~ 78 (243)
..+.++++.+||. ||.+ .+..|..++. .|+... + .. ......+.++++|..- .+-++.+...+-.+..
T Consensus 159 taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~ 237 (406)
T KOG2919|consen 159 TAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND 237 (406)
T ss_pred hhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEec
Confidence 4567899999995 5555 5567888872 343111 1 11 0011222567887543 4355555554434432
Q ss_pred CCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee---cccc-cc
Q 026118 79 EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL---DGLY-FA 154 (243)
Q Consensus 79 ~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~---~~~~-~~ 154 (243)
++.+++.... .....+..+.+-++|+-+++.. +....|.+.|.. ....++. .... ..
T Consensus 238 ~~~~pl~llg--gh~gGvThL~~~edGn~lfsGa----------------Rk~dkIl~WDiR-~~~~pv~~L~rhv~~TN 298 (406)
T KOG2919|consen 238 DGRRPLQLLG--GHGGGVTHLQWCEDGNKLFSGA----------------RKDDKILCWDIR-YSRDPVYALERHVGDTN 298 (406)
T ss_pred CCCCceeeec--ccCCCeeeEEeccCcCeecccc----------------cCCCeEEEEeeh-hccchhhhhhhhccCcc
Confidence 2212222111 1224566778889998555522 345578887765 2222221 1111 22
Q ss_pred ceEEE--cCCCCEEEEEEcCCCeEEEEEeec
Q 026118 155 NGVAL--SEDERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 155 ~gi~~--~~dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
+.|.| +|+++ +.++...++.|.++|.++
T Consensus 299 QRI~FDld~~~~-~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 299 QRILFDLDPKGE-ILASGDTDGSVRVWDLKD 328 (406)
T ss_pred ceEEEecCCCCc-eeeccCCCccEEEEecCC
Confidence 33555 47788 555656778999999875
No 229
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=93.65 E-value=0.45 Score=26.15 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=29.1
Q ss_pred CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe-eccccccceEEEcC
Q 026118 105 GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYFANGVALSE 161 (243)
Q Consensus 105 G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~~~~~gi~~~~ 161 (243)
+++|++|.. ....|.+.+.++...+.+ ...+..|.||++++
T Consensus 1 ~~iYWtD~~----------------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWS----------------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETT----------------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECC----------------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 468888765 113788888886664444 56788999999874
No 230
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.55 E-value=3.4 Score=33.55 Aligned_cols=161 Identities=15% Similarity=0.107 Sum_probs=76.2
Q ss_pred CccccceEEccCCCEEEEEeCCCcEE-EEecC-----C-cEEEEeccCC----CcccCCccEEEcCCCcEEEEeCCCCCC
Q 026118 49 SQSLLGLTTTKENNVIIVCDSQQGLL-KVSEE-----G-VTVLVSQFNG----SQLRFANDVIEASDGSLYFTVSSTKFT 117 (243)
Q Consensus 49 ~~~~~~i~~~~~g~l~~v~~~~~gl~-~~~~~-----g-~~~~~~~~~~----~~~~~~~~l~~d~~G~l~v~~~~~~~~ 117 (243)
.+++ ||++.|.+.+ ||++...++. .++-+ + ...+...+.. .....|.++++.....+-++...
T Consensus 23 ~N~W-Gia~~p~~~~-WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g---- 96 (336)
T TIGR03118 23 RNAW-GLSYRPGGPF-WVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEG---- 96 (336)
T ss_pred cccc-eeEecCCCCE-EEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCC----
Confidence 4678 9999999988 9999776654 33322 4 2222222221 11235666666543222222111
Q ss_pred cccccccccccCCCceEEEEeCCCCee------EEeec--cccccceEEEcC--CCCEEEEEEcCCCeEEEEEeecCCCc
Q 026118 118 PAEYYLDLVSGEPHGVLLKYDPSTNQT------SLVLD--GLYFANGVALSE--DERFLVVCESWKFRCVKHFLKVSGRT 187 (243)
Q Consensus 118 ~~~~~~~~~~~~~~g~v~~~~~~~~~~------~~~~~--~~~~~~gi~~~~--dg~~l~v~~~~~~~i~~~~~~~~~~~ 187 (243)
+... .........|.|..+.+.-+.. ..+.. ....-.|+++.. .+++||.++..+++|-+||-+-....
T Consensus 97 ~~~~-a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~ 175 (336)
T TIGR03118 97 ITGP-SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP 175 (336)
T ss_pred cccc-eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc
Confidence 0000 0000012334555555432221 11111 112235677653 46789999999999999875421111
Q ss_pred ceEEeccC-CC--CCCCceEECCCCCEEEEEec
Q 026118 188 DREIFIDN-LP--GGPDNVNLARDGSFWISIIK 217 (243)
Q Consensus 188 ~~~~~~~~-~~--~~~~~i~~d~~G~lwv~~~~ 217 (243)
....|.+. .+ .-|.+|.- -.|+|||....
T Consensus 176 ~~g~F~DP~iPagyAPFnIqn-ig~~lyVtYA~ 207 (336)
T TIGR03118 176 LPGSFIDPALPAGYAPFNVQN-LGGTLYVTYAQ 207 (336)
T ss_pred CCCCccCCCCCCCCCCcceEE-ECCeEEEEEEe
Confidence 11112111 11 13555543 35678886543
No 231
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=93.41 E-value=3.9 Score=33.83 Aligned_cols=102 Identities=16% Similarity=0.076 Sum_probs=62.3
Q ss_pred ecccccCCcccEEEcCCCcEEEEe--CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cC
Q 026118 4 LGEGIVNHPEDVSVDGNGVLYTAT--GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EE 79 (243)
Q Consensus 4 ~~~g~~~~p~~i~~d~~g~l~~~~--~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~ 79 (243)
+..|.+..-.++++||- +-|+++ .++.+-.+| ..|+.+.-....-....++++++.--+||.+..++-|-.+| ..
T Consensus 146 Vi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence 44565666789999996 445444 567777888 67776654332112222788876555657777666677788 43
Q ss_pred C--cEEEEeccCCCcccCCccEEEcCCCcEEEEe
Q 026118 80 G--VTVLVSQFNGSQLRFANDVIEASDGSLYFTV 111 (243)
Q Consensus 80 g--~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~ 111 (243)
. .+.+. + .++.+.++...|--.+.++.
T Consensus 225 nkvIR~Yh----G-HlS~V~~L~lhPTldvl~t~ 253 (460)
T KOG0285|consen 225 NKVIRHYH----G-HLSGVYCLDLHPTLDVLVTG 253 (460)
T ss_pred hhhHHHhc----c-ccceeEEEeccccceeEEec
Confidence 3 33322 2 24567777777766666663
No 232
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.37 E-value=5.1 Score=35.05 Aligned_cols=154 Identities=18% Similarity=0.245 Sum_probs=73.1
Q ss_pred cEEEEeC-----CCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEecCC-cEEEEeccCCCcccC
Q 026118 22 VLYTATG-----DGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVLVSQFNGSQLRF 95 (243)
Q Consensus 22 ~l~~~~~-----~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g-~~~~~~~~~~~~~~~ 95 (243)
.||+... ....+.+|.+|.++.+..........+.+.++|++ ++.. ...+..+|-.| ...... .+......
T Consensus 115 gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~l-l~~~-~~~~~e~D~~G~v~~~~~-l~~~~~~~ 191 (477)
T PF05935_consen 115 GLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNL-LIGS-GNRLYEIDLLGKVIWEYD-LPGGYYDF 191 (477)
T ss_dssp -EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-E-EEEE-BTEEEEE-TT--EEEEEE---TTEE-B
T ss_pred cEEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeEcCCCCE-EEec-CCceEEEcCCCCEEEeee-cCCccccc
Confidence 4665443 45678888889887554322221102567789999 5554 36888998556 322222 11111122
Q ss_pred CccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec--------------------------
Q 026118 96 ANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-------------------------- 149 (243)
Q Consensus 96 ~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-------------------------- 149 (243)
=.++...++|++.+.......... ..........|+.+| .+|++...+.
T Consensus 192 HHD~~~l~nGn~L~l~~~~~~~~~----~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~ 266 (477)
T PF05935_consen 192 HHDIDELPNGNLLILASETKYVDE----DKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGG 266 (477)
T ss_dssp -S-EEE-TTS-EEEEEEETTEE-T----S-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SST
T ss_pred ccccEECCCCCEEEEEeecccccC----CCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCC
Confidence 346788899986664321000000 001112234688888 4576544311
Q ss_pred --cccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118 150 --GLYFANGVALSEDERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 150 --~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
+..+.|++.+++..+.|.++....+.|++++...
T Consensus 267 ~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t 302 (477)
T PF05935_consen 267 GRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRT 302 (477)
T ss_dssp TSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TT
T ss_pred CCCccccCccEEeCCCCeEEEEcCcceEEEEEECCC
Confidence 0134578999996666888887778999999554
No 233
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=93.37 E-value=3.7 Score=33.44 Aligned_cols=144 Identities=12% Similarity=0.075 Sum_probs=70.7
Q ss_pred CcccEEEcCCCcEEEE-eCCCcEEEEcc-CC-----ceeEecccCCccccceEEccCCCEEEEEe-CCCcEEEEe----c
Q 026118 11 HPEDVSVDGNGVLYTA-TGDGWIKRMHP-NG-----TWEDWHQVGSQSLLGLTTTKENNVIIVCD-SQQGLLKVS----E 78 (243)
Q Consensus 11 ~p~~i~~d~~g~l~~~-~~~~~i~~~~~-~g-----~~~~~~~~~~~~~~~i~~~~~g~l~~v~~-~~~gl~~~~----~ 78 (243)
.-.++++.+||.-+.+ ..++.|..++. +- +..+...+...|. -++|.||-+-+.+.- .+..|+.|. .
T Consensus 88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT-~V~FapDc~s~vv~~~~g~~l~vyk~~K~~ 166 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPT-RVVFAPDCKSVVVSVKRGNKLCVYKLVKKT 166 (420)
T ss_pred ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCce-EEEECCCcceEEEEEccCCEEEEEEeeecc
Confidence 3457889999964444 47777777762 21 1112222334667 888988887522222 234455553 2
Q ss_pred CC-cEEEEeccC---CCcccCCccEEEc-CCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccc
Q 026118 79 EG-VTVLVSQFN---GSQLRFANDVIEA-SDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF 153 (243)
Q Consensus 79 ~g-~~~~~~~~~---~~~~~~~~~l~~d-~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~ 153 (243)
+| ...-....+ -.....+.-+-+. .++..|+... .....|+.++..+..+..+......
T Consensus 167 dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsa----------------s~dt~i~lw~lkGq~L~~idtnq~~ 230 (420)
T KOG2096|consen 167 DGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSA----------------SLDTKICLWDLKGQLLQSIDTNQSS 230 (420)
T ss_pred cCCCCcccccccccccchhcccceEEEeecCCceEEEEe----------------cCCCcEEEEecCCceeeeecccccc
Confidence 44 211111111 1111111111111 2334444321 1334688888883333333333333
Q ss_pred cceEEEcCCCCEEEEEEc
Q 026118 154 ANGVALSEDERFLVVCES 171 (243)
Q Consensus 154 ~~gi~~~~dg~~l~v~~~ 171 (243)
..-.+++|+|+.+-++..
T Consensus 231 n~~aavSP~GRFia~~gF 248 (420)
T KOG2096|consen 231 NYDAAVSPDGRFIAVSGF 248 (420)
T ss_pred ccceeeCCCCcEEEEecC
Confidence 445789999997776654
No 234
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.34 E-value=4.2 Score=34.26 Aligned_cols=84 Identities=19% Similarity=0.240 Sum_probs=47.8
Q ss_pred eEEEEeCCCCeeEEeec-------cccccceEEEc--C-CCCEEEE-EEcCCCeEEEEEeecCCCcc-----eEEeccCC
Q 026118 133 VLLKYDPSTNQTSLVLD-------GLYFANGVALS--E-DERFLVV-CESWKFRCVKHFLKVSGRTD-----REIFIDNL 196 (243)
Q Consensus 133 ~v~~~~~~~~~~~~~~~-------~~~~~~gi~~~--~-dg~~l~v-~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~ 196 (243)
++|+++++++.++.+.. ....+.|+++- + +|+ +|+ .....+.+..|.+....-+. .+.| ..
T Consensus 130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~-~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f--~~ 206 (381)
T PF02333_consen 130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGA-LYAFVNGKDGRVEQYELTDDGDGKVSATLVREF--KV 206 (381)
T ss_dssp EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT---EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE--E-
T ss_pred EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCc-EEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe--cC
Confidence 68999998888776532 23346788874 3 455 443 33445778777775321111 2222 23
Q ss_pred CCCCCceEECC-CCCEEEEEecCC
Q 026118 197 PGGPDNVNLAR-DGSFWISIIKMD 219 (243)
Q Consensus 197 ~~~~~~i~~d~-~G~lwv~~~~~~ 219 (243)
...+.+++.|. .|.||++.-..+
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~~G 230 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEEDVG 230 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETTTE
T ss_pred CCcceEEEEecccCCEEEecCccE
Confidence 45688888874 578999875544
No 235
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=93.17 E-value=0.3 Score=26.46 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=25.5
Q ss_pred ccccCCcccEEEcC-CCcEEEEe-CCCcEEEEccCC
Q 026118 6 EGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNG 39 (243)
Q Consensus 6 ~g~~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g 39 (243)
...+..|.+|++|+ .+.||.++ ....|.+.+.+|
T Consensus 5 ~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 5 SEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred ECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 33588999999997 55799888 456777776544
No 236
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=93.13 E-value=4.9 Score=34.18 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=45.1
Q ss_pred ccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc-CCCCCCCceEECCCCC-EEEEEec
Q 026118 153 FANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID-NLPGGPDNVNLARDGS-FWISIIK 217 (243)
Q Consensus 153 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~G~-lwv~~~~ 217 (243)
+.++++..+..+ |+.+.+.++.|..+-...+ +....++.. ...|+.+.|++..+|. ||++...
T Consensus 382 Witsla~i~~sd-L~asGS~~G~vrLW~i~~g-~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 382 WITSLAVIPGSD-LLASGSWSGCVRLWKIEDG-LRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred ceeeeEecccCc-eEEecCCCCceEEEEecCC-ccccceeeecccccEEEEEEEccCCCEEEEeccc
Confidence 567888888777 8888888888887777653 223333322 3567889999999998 8887543
No 237
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.12 E-value=4.9 Score=34.19 Aligned_cols=153 Identities=14% Similarity=0.090 Sum_probs=72.7
Q ss_pred ceEEccCCCEEEEE-eCCC----cEEEEe-cCCcEEEEeccCCCcccCCccEEEcCCCcE-EEEeCCCCCCccccccccc
Q 026118 54 GLTTTKENNVIIVC-DSQQ----GLLKVS-EEGVTVLVSQFNGSQLRFANDVIEASDGSL-YFTVSSTKFTPAEYYLDLV 126 (243)
Q Consensus 54 ~i~~~~~g~l~~v~-~~~~----gl~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l-~v~~~~~~~~~~~~~~~~~ 126 (243)
.+.++++|+++.++ +.++ -++.+| .+| +.+...+.. .....+...++|+. |++........ .
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i~~---~~~~~~~W~~d~~~~~y~~~~~~~~~-------~ 196 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGIEN---PKFSSVSWSDDGKGFFYTRFDEDQRT-------S 196 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEEEE---EESEEEEECTTSSEEEEEECSTTTSS--------
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCcccc---cccceEEEeCCCCEEEEEEeCccccc-------c
Confidence 46788999974443 2222 267777 677 111111111 11123788888764 44432210000 0
Q ss_pred ccCCCceEEEEeCCCCeeE--Eeeccccc---cceEEEcCCCCEEEEEEcCC---CeEEEEEeecC--CCcceEEeccCC
Q 026118 127 SGEPHGVLLKYDPSTNQTS--LVLDGLYF---ANGVALSEDERFLVVCESWK---FRCVKHFLKVS--GRTDREIFIDNL 196 (243)
Q Consensus 127 ~~~~~g~v~~~~~~~~~~~--~~~~~~~~---~~gi~~~~dg~~l~v~~~~~---~~i~~~~~~~~--~~~~~~~~~~~~ 196 (243)
.......|++....+...+ .+...... ..++..++|+++|++..... ..++.++.... .......+....
T Consensus 197 ~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 0011346888887765432 33332222 34788899999988865432 45777777653 122334433222
Q ss_pred CCCCCceEECCCCCEEEEEecC
Q 026118 197 PGGPDNVNLARDGSFWISIIKM 218 (243)
Q Consensus 197 ~~~~~~i~~d~~G~lwv~~~~~ 218 (243)
.+.- .......+.+|+-++.+
T Consensus 277 ~~~~-~~v~~~~~~~yi~Tn~~ 297 (414)
T PF02897_consen 277 DGVE-YYVDHHGDRLYILTNDD 297 (414)
T ss_dssp SS-E-EEEEEETTEEEEEE-TT
T ss_pred CceE-EEEEccCCEEEEeeCCC
Confidence 2211 11222345588877654
No 238
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=92.99 E-value=4 Score=32.85 Aligned_cols=66 Identities=15% Similarity=0.303 Sum_probs=45.3
Q ss_pred cEEEcCCCcEEEEe-CCCcEEEEccCCceeEecccC---CccccceEEccCCCEEEEEeCCCcEEEEe-cCC
Q 026118 14 DVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDWHQVG---SQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG 80 (243)
Q Consensus 14 ~i~~d~~g~l~~~~-~~~~i~~~~~~g~~~~~~~~~---~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g 80 (243)
.+.++|+|..+++. .+..|+.++..|....+.... +... ++.+.+|++.++.+..++.++.+| .+|
T Consensus 52 ~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM-~l~~~~d~s~i~S~gtDk~v~~wD~~tG 122 (338)
T KOG0265|consen 52 TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVM-ELHGMRDGSHILSCGTDKTVRGWDAETG 122 (338)
T ss_pred EEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeE-eeeeccCCCEEEEecCCceEEEEecccc
Confidence 46678888877665 678888887444433332211 2233 677789998868887778899999 777
No 239
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.92 E-value=4.3 Score=32.96 Aligned_cols=135 Identities=13% Similarity=0.092 Sum_probs=70.4
Q ss_pred cEEEEeCCCcEEEEccCCceeE---ecccCCccccceEEccCCCEEEEEeCCCcEE-EEe-cCCcEEEEeccCCCcccCC
Q 026118 22 VLYTATGDGWIKRMHPNGTWED---WHQVGSQSLLGLTTTKENNVIIVCDSQQGLL-KVS-EEGVTVLVSQFNGSQLRFA 96 (243)
Q Consensus 22 ~l~~~~~~~~i~~~~~~g~~~~---~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~-~~~-~~g~~~~~~~~~~~~~~~~ 96 (243)
.|..+..+|.|..++ .+.+.. +....+..+ ++++.|.|++ .++-.+.+.+ .+| -.|..-+..... ..+
T Consensus 99 hLlS~sdDG~i~iw~-~~~W~~~~slK~H~~~Vt-~lsiHPS~KL-ALsVg~D~~lr~WNLV~Gr~a~v~~L~----~~a 171 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWR-VGSWELLKSLKAHKGQVT-DLSIHPSGKL-ALSVGGDQVLRTWNLVRGRVAFVLNLK----NKA 171 (362)
T ss_pred heeeecCCCcEEEEE-cCCeEEeeeecccccccc-eeEecCCCce-EEEEcCCceeeeehhhcCccceeeccC----Ccc
Confidence 466666777777776 232221 222224445 8999999999 5554455544 455 344111111111 223
Q ss_pred ccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeE
Q 026118 97 NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRC 176 (243)
Q Consensus 97 ~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i 176 (243)
.-+.+++.|..|+... ..+|-.|..++..+.........+..+.+.. +..|.++.. +..|
T Consensus 172 t~v~w~~~Gd~F~v~~------------------~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~-~~~L~vG~d-~~~i 231 (362)
T KOG0294|consen 172 TLVSWSPQGDHFVVSG------------------RNKIDIYQLDNASVFREIENPKRILCATFLD-GSELLVGGD-NEWI 231 (362)
T ss_pred eeeEEcCCCCEEEEEe------------------ccEEEEEecccHhHhhhhhccccceeeeecC-CceEEEecC-CceE
Confidence 3478899998665422 2345445444333332222223334455543 444777753 4678
Q ss_pred EEEEeec
Q 026118 177 VKHFLKV 183 (243)
Q Consensus 177 ~~~~~~~ 183 (243)
..+|.+.
T Consensus 232 ~~~D~ds 238 (362)
T KOG0294|consen 232 SLKDTDS 238 (362)
T ss_pred EEeccCC
Confidence 7777664
No 240
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.83 E-value=6.8 Score=35.14 Aligned_cols=182 Identities=16% Similarity=0.186 Sum_probs=88.3
Q ss_pred CCcEEEEe-CC------CcEEEEcc-CCceeEecccC-CccccceEEccCCCEEEEEeCCCc------EEEEec-CC-cE
Q 026118 20 NGVLYTAT-GD------GWIKRMHP-NGTWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQQG------LLKVSE-EG-VT 82 (243)
Q Consensus 20 ~g~l~~~~-~~------~~i~~~~~-~g~~~~~~~~~-~~~~~~i~~~~~g~l~~v~~~~~g------l~~~~~-~g-~~ 82 (243)
+|.||+.. .+ ..+.++|+ ..+|.....-. .+...+++. -+|.+ |+.....| +-++|+ +. ..
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~-l~g~i-YavGG~dg~~~l~svE~YDp~~~~W~ 409 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV-LDGKL-YAVGGFDGEKSLNSVECYDPVTNKWT 409 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE-ECCEE-EEEeccccccccccEEEecCCCCccc
Confidence 56788655 33 23567774 44555533211 111113333 34566 87764432 677773 33 43
Q ss_pred EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc--cccceEEEc
Q 026118 83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--YFANGVALS 160 (243)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~--~~~~gi~~~ 160 (243)
....-.. ...-.++ +.-+|.+|+..-.. .....-..+.+|||.+..++..+.=. ..-.+++.-
T Consensus 410 ~va~m~~---~r~~~gv-~~~~g~iYi~GG~~-----------~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~ 474 (571)
T KOG4441|consen 410 PVAPMLT---RRSGHGV-AVLGGKLYIIGGGD-----------GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL 474 (571)
T ss_pred ccCCCCc---ceeeeEE-EEECCEEEEEcCcC-----------CCccccceEEEEcCCCCceeecCCcccccccceEEEE
Confidence 3221111 1122232 23478999873210 00012357899999999888764321 222344433
Q ss_pred CCCCEEEEEEcCC-----CeEEEEEeecCCCcceEEeccCCCC-CCCceEECCCCCEEEEEecCCchhhh
Q 026118 161 EDERFLVVCESWK-----FRCVKHFLKVSGRTDREIFIDNLPG-GPDNVNLARDGSFWISIIKMDPKGIQ 224 (243)
Q Consensus 161 ~dg~~l~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~d~~G~lwv~~~~~~~~~~~ 224 (243)
+++ ||+....+ .++.+||+.. ..+..+...... ...+++.. ++.||+.....+.....
T Consensus 475 -~~~-iYvvGG~~~~~~~~~VE~ydp~~---~~W~~v~~m~~~rs~~g~~~~-~~~ly~vGG~~~~~~l~ 538 (571)
T KOG4441|consen 475 -NGK-IYVVGGFDGTSALSSVERYDPET---NQWTMVAPMTSPRSAVGVVVL-GGKLYAVGGFDGNNNLN 538 (571)
T ss_pred -CCE-EEEECCccCCCccceEEEEcCCC---CceeEcccCccccccccEEEE-CCEEEEEecccCccccc
Confidence 444 98875422 3477788754 334444322221 22334443 56687766544433333
No 241
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.80 E-value=4.7 Score=34.48 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=34.7
Q ss_pred cccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEE
Q 026118 152 YFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISI 215 (243)
Q Consensus 152 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~ 215 (243)
...++|+++++|+|+..+. .+..+-.||+..- .+...+.. +.....++++..|.|-++.
T Consensus 294 g~V~siAv~~~G~YMaTtG-~Dr~~kIWDlR~~--~ql~t~~t--p~~a~~ls~SqkglLA~~~ 352 (545)
T KOG1272|consen 294 GPVSSIAVDRGGRYMATTG-LDRKVKIWDLRNF--YQLHTYRT--PHPASNLSLSQKGLLALSY 352 (545)
T ss_pred CCcceEEECCCCcEEeecc-cccceeEeeeccc--cccceeec--CCCccccccccccceeeec
Confidence 3457899999999776664 4577888887642 12212211 1123456777666555543
No 242
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=92.80 E-value=4.9 Score=33.28 Aligned_cols=99 Identities=13% Similarity=0.144 Sum_probs=55.5
Q ss_pred CcccEEE-cC-CCcEEEEe----CCCcEEEEccC--CceeEecccCCccccceEEccCCCEEEEEeCCCcEEEE-e-cCC
Q 026118 11 HPEDVSV-DG-NGVLYTAT----GDGWIKRMHPN--GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV-S-EEG 80 (243)
Q Consensus 11 ~p~~i~~-d~-~g~l~~~~----~~~~i~~~~~~--g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~-~-~~g 80 (243)
+|.+++. .+ ..+-|++- ..|.|+.+|.. ..+..+... ..+...|+|+++|++|..+...+-|.|+ . ++|
T Consensus 128 n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH-~~~lAalafs~~G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 128 NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAH-KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred CccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEec-CCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence 5554433 33 33445443 45778888832 223333322 2334389999999994444433335544 4 677
Q ss_pred --cEEEEeccCCCcccCCccEEEcCCCcEEEEeCC
Q 026118 81 --VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSS 113 (243)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~ 113 (243)
+..+... .....+.++++++++.+..+.++
T Consensus 207 ~kl~eFRRG---~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 207 QKLYEFRRG---TYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred cEeeeeeCC---ceeeEEEEEEECCCCCeEEEecC
Confidence 3334332 22346778999999987776654
No 243
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.76 E-value=3.8 Score=31.96 Aligned_cols=132 Identities=11% Similarity=0.012 Sum_probs=78.9
Q ss_pred CCCcEEEEc-cCCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcC
Q 026118 28 GDGWIKRMH-PNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEAS 103 (243)
Q Consensus 28 ~~~~i~~~~-~~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~ 103 (243)
.+..+..+| .+|++. +|....+..+ .+.|+.+-.+++.+..+..+-.+| ... ++++....+. ...+.++. -
T Consensus 79 gDk~v~vwDV~TGkv~Rr~rgH~aqVN-tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea--~D~V~Si~--v 153 (307)
T KOG0316|consen 79 GDKAVQVWDVNTGKVDRRFRGHLAQVN-TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA--KDGVSSID--V 153 (307)
T ss_pred CCceEEEEEcccCeeeeecccccceee-EEEecCcceEEEeccccceeEEEEcccCCCCccchhhhh--cCceeEEE--e
Confidence 345678888 566644 3444445556 888887777756666666788888 655 5554321111 12333333 3
Q ss_pred CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccc-cceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118 104 DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF-ANGVALSEDERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 104 ~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~-~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 182 (243)
.++.+++.+ ..|.+-.||...|++. .+.... .+.+.|++|++.+.++. .+..|..+|.+
T Consensus 154 ~~heIvaGS-----------------~DGtvRtydiR~G~l~--sDy~g~pit~vs~s~d~nc~La~~-l~stlrLlDk~ 213 (307)
T KOG0316|consen 154 AEHEIVAGS-----------------VDGTVRTYDIRKGTLS--SDYFGHPITSVSFSKDGNCSLASS-LDSTLRLLDKE 213 (307)
T ss_pred cccEEEeec-----------------cCCcEEEEEeecceee--hhhcCCcceeEEecCCCCEEEEee-ccceeeecccc
Confidence 455566532 3467777887656532 222333 47899999999777764 56778878876
Q ss_pred cC
Q 026118 183 VS 184 (243)
Q Consensus 183 ~~ 184 (243)
.+
T Consensus 214 tG 215 (307)
T KOG0316|consen 214 TG 215 (307)
T ss_pred hh
Confidence 43
No 244
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.36 E-value=4.6 Score=31.98 Aligned_cols=145 Identities=13% Similarity=0.084 Sum_probs=76.2
Q ss_pred ceEEccCCCEEEEEe---CCCcEEEEecCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccC
Q 026118 54 GLTTTKENNVIIVCD---SQQGLLKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGE 129 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~---~~~gl~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~ 129 (243)
..+++++|..+.+.. ....|+.....+ ...+. .+..+..| .+|++|.+|+.....
T Consensus 28 s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~---~g~~l~~P---S~d~~g~~W~v~~~~--------------- 86 (253)
T PF10647_consen 28 SPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL---TGGSLTRP---SWDPDGWVWTVDDGS--------------- 86 (253)
T ss_pred ceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec---cCCccccc---cccCCCCEEEEEcCC---------------
Confidence 778888988633333 223466655434 33322 22233344 788999999986431
Q ss_pred CCceEEEEeCCCCeeEEee---cccc-ccceEEEcCCCCEEEEEE--cCCCeEEEEEeecCCCc------ceEEeccCCC
Q 026118 130 PHGVLLKYDPSTNQTSLVL---DGLY-FANGVALSEDERFLVVCE--SWKFRCVKHFLKVSGRT------DREIFIDNLP 197 (243)
Q Consensus 130 ~~g~v~~~~~~~~~~~~~~---~~~~-~~~gi~~~~dg~~l~v~~--~~~~~i~~~~~~~~~~~------~~~~~~~~~~ 197 (243)
....+++ +...++..... .... ....+.+++||..+-+.. ....+|+...+..+.-+ ..........
T Consensus 87 ~~~~~~~-~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~ 165 (253)
T PF10647_consen 87 GGVRVVR-DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL 165 (253)
T ss_pred CceEEEE-ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence 1112332 32224333321 1122 567899999999775553 23466776655422111 1111111112
Q ss_pred CCCCceEECCCCCEEEEEecCCc
Q 026118 198 GGPDNVNLARDGSFWISIIKMDP 220 (243)
Q Consensus 198 ~~~~~i~~d~~G~lwv~~~~~~~ 220 (243)
.-...++...+++|.|.....+.
T Consensus 166 ~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 166 SDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred CcceeeeecCCCEEEEEeCCCCC
Confidence 23456777788888887766554
No 245
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=92.29 E-value=0.16 Score=27.32 Aligned_cols=21 Identities=5% Similarity=0.213 Sum_probs=17.7
Q ss_pred CCCceEECCCCCEEEEEecCC
Q 026118 199 GPDNVNLARDGSFWISIIKMD 219 (243)
Q Consensus 199 ~~~~i~~d~~G~lwv~~~~~~ 219 (243)
.+.+|++|++|++||+....+
T Consensus 14 ~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eEEEEEECCCCCEEEEEeecC
Confidence 478899999999999887654
No 246
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.10 E-value=4 Score=33.97 Aligned_cols=118 Identities=12% Similarity=0.013 Sum_probs=66.6
Q ss_pred EEeCCCcEEEEccCCc---eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEeccCCCcccCCccEE
Q 026118 25 TATGDGWIKRMHPNGT---WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQFNGSQLRFANDVI 100 (243)
Q Consensus 25 ~~~~~~~i~~~~~~g~---~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~l~ 100 (243)
.++.-+.+..+|+..+ +..+.. ..++.+.+...++|+++|+++....+..|| ..+. .+.....+. ...+.+|.
T Consensus 221 t~T~~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k-l~g~~~kg~-tGsirsih 297 (412)
T KOG3881|consen 221 TITRYHQVRLYDTRHQRRPVAQFDF-LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK-LLGCGLKGI-TGSIRSIH 297 (412)
T ss_pred EEecceeEEEecCcccCcceeEecc-ccCcceeeeecCCCcEEEEecccchhheecccCce-eeccccCCc-cCCcceEE
Confidence 3344566777774322 222322 245665788899999989999878899999 5552 222112221 23567788
Q ss_pred EcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCC
Q 026118 101 EASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED 162 (243)
Q Consensus 101 ~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~d 162 (243)
.+|.+.+..+..- .-.|-.+|.++..+..-..-...+++|.+.++
T Consensus 298 ~hp~~~~las~GL-----------------DRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 298 CHPTHPVLASCGL-----------------DRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred EcCCCceEEeecc-----------------ceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 8888777665321 11344467664332211122345677777554
No 247
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=91.96 E-value=7.3 Score=33.38 Aligned_cols=69 Identities=13% Similarity=0.002 Sum_probs=49.4
Q ss_pred CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCC
Q 026118 95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKF 174 (243)
Q Consensus 95 ~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~ 174 (243)
.+.+++++|+|++..+.+ ..+.|...+..++++-+-..+......+.|+.+|+.|-++ ...+
T Consensus 454 pVysvafS~~g~ylAsGs-----------------~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~-~sd~ 515 (524)
T KOG0273|consen 454 PVYSVAFSPNGRYLASGS-----------------LDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGAC-ASDG 515 (524)
T ss_pred ceEEEEecCCCcEEEecC-----------------CCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEE-ecCC
Confidence 467899999998777632 3467888887777766555555667789999999855555 4567
Q ss_pred eEEEEEe
Q 026118 175 RCVKHFL 181 (243)
Q Consensus 175 ~i~~~~~ 181 (243)
.+..+|+
T Consensus 516 ~vcvldl 522 (524)
T KOG0273|consen 516 SVCVLDL 522 (524)
T ss_pred CceEEEe
Confidence 7777664
No 248
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=91.87 E-value=6.5 Score=32.57 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=46.9
Q ss_pred ceEEEEeCCCCeeEE-eeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118 132 GVLLKYDPSTNQTSL-VLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS 210 (243)
Q Consensus 132 g~v~~~~~~~~~~~~-~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~ 210 (243)
..|-..|..++..-. +.....+..+++|+|.|+||.-+ +.+.+|..||++... +.......+.+...+.++.+ .
T Consensus 314 ktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sc-aDDktlrvwdl~~~~---cmk~~~ah~hfvt~lDfh~~-~ 388 (406)
T KOG0295|consen 314 KTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSC-ADDKTLRVWDLKNLQ---CMKTLEAHEHFVTSLDFHKT-A 388 (406)
T ss_pred ceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEE-ecCCcEEEEEeccce---eeeccCCCcceeEEEecCCC-C
Confidence 445556776675443 23345678899999999977644 567899999987531 11111122234444555443 3
Q ss_pred EEEEEe
Q 026118 211 FWISII 216 (243)
Q Consensus 211 lwv~~~ 216 (243)
.||.+.
T Consensus 389 p~VvTG 394 (406)
T KOG0295|consen 389 PYVVTG 394 (406)
T ss_pred ceEEec
Confidence 466553
No 249
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=91.66 E-value=6.4 Score=32.11 Aligned_cols=122 Identities=11% Similarity=0.151 Sum_probs=61.3
Q ss_pred ceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCC-------CcccCCccEEEc----CCCcEEEEeCCCCCCccc
Q 026118 54 GLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNG-------SQLRFANDVIEA----SDGSLYFTVSSTKFTPAE 120 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~-------~~~~~~~~l~~d----~~G~l~v~~~~~~~~~~~ 120 (243)
++..+.+|++|..+....-|++++ .+| +......... .......+..+- .+++|-+-|....
T Consensus 148 sV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~----- 222 (299)
T PF14269_consen 148 SVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANS----- 222 (299)
T ss_pred eeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCC-----
Confidence 678888999844444446799999 777 4443221100 001222233333 4555655554200
Q ss_pred ccccccccCCCceEEEEeCCCCeeEEeecccccc--------ceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118 121 YYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA--------NGVALSEDERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 121 ~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~--------~gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
.. .......+.++.+|+.+.+.+.+......+ -.+..-|+|+ ++|+....+.+..++.++
T Consensus 223 -~~-~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn-~li~~g~~g~~~E~~~~G 290 (299)
T PF14269_consen 223 -DF-NGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGN-VLIGWGNNGRISEFTPDG 290 (299)
T ss_pred -CC-CCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCC-EEEecCCCceEEEECCCC
Confidence 00 112234567888998866555433211011 1233345666 666655556666665444
No 250
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=91.53 E-value=8.6 Score=33.33 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=52.5
Q ss_pred CceEEEEeCCCCeeEEee-ccccc-cceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCC
Q 026118 131 HGVLLKYDPSTNQTSLVL-DGLYF-ANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARD 208 (243)
Q Consensus 131 ~g~v~~~~~~~~~~~~~~-~~~~~-~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~ 208 (243)
.|.|..+|..+......+ ..... ..||+|+|-+..|+++--.+..|+.||.........-.+... ...+++.++
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P----lstvaf~~~ 261 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP----LSTVAFSEC 261 (673)
T ss_pred CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCC----cceeeecCC
Confidence 467777887743332221 22223 368999998887999888889999999764333333232211 244777778
Q ss_pred CCEEEEEecCC
Q 026118 209 GSFWISIIKMD 219 (243)
Q Consensus 209 G~lwv~~~~~~ 219 (243)
|.+.++.+..+
T Consensus 262 G~~L~aG~s~G 272 (673)
T KOG4378|consen 262 GTYLCAGNSKG 272 (673)
T ss_pred ceEEEeecCCc
Confidence 87666555444
No 251
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.47 E-value=10 Score=33.97 Aligned_cols=182 Identities=13% Similarity=0.084 Sum_probs=90.3
Q ss_pred cEEE-cCCCcEEEEe-CCCcEEEEc-cCCce---eEec------cc--CCccccceEEccCCCEEEEEeCCCcE-EEEe-
Q 026118 14 DVSV-DGNGVLYTAT-GDGWIKRMH-PNGTW---EDWH------QV--GSQSLLGLTTTKENNVIIVCDSQQGL-LKVS- 77 (243)
Q Consensus 14 ~i~~-d~~g~l~~~~-~~~~i~~~~-~~g~~---~~~~------~~--~~~~~~~i~~~~~g~l~~v~~~~~gl-~~~~- 77 (243)
+|++ ..+..+.++. -+++|+.+| ..+.. ..+. .. ...+..+++..+.|.+ +++..-.+. ..+|
T Consensus 122 cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~-ivsGgtek~lr~wDp 200 (735)
T KOG0308|consen 122 CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI-IVSGGTEKDLRLWDP 200 (735)
T ss_pred eeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE-EEecCcccceEEecc
Confidence 4555 4555566554 678899888 33321 1111 11 1112225677777766 555433454 4555
Q ss_pred cCCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe-eEEeeccccccce
Q 026118 78 EEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ-TSLVLDGLYFANG 156 (243)
Q Consensus 78 ~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~-~~~~~~~~~~~~g 156 (243)
.++.+.+.. .+. ...+..+.+++||+-.++.++ .|.|-..|..-.+ +..++......=.
T Consensus 201 rt~~kimkL--rGH-TdNVr~ll~~dDGt~~ls~sS-----------------DgtIrlWdLgqQrCl~T~~vH~e~VWa 260 (735)
T KOG0308|consen 201 RTCKKIMKL--RGH-TDNVRVLLVNDDGTRLLSASS-----------------DGTIRLWDLGQQRCLATYIVHKEGVWA 260 (735)
T ss_pred ccccceeee--ecc-ccceEEEEEcCCCCeEeecCC-----------------CceEEeeeccccceeeeEEeccCceEE
Confidence 444332221 111 245678899999987777543 2334334443111 1111111111224
Q ss_pred EEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECC-CCCEEEEEecCCc
Q 026118 157 VALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLAR-DGSFWISIIKMDP 220 (243)
Q Consensus 157 i~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~~~~ 220 (243)
+..+++-+.+|.++ .++.|++-++... .....++.... -..-+.... +..+|++++.+..
T Consensus 261 L~~~~sf~~vYsG~-rd~~i~~Tdl~n~--~~~tlick~da-Pv~~l~~~~~~~~~WvtTtds~I 321 (735)
T KOG0308|consen 261 LQSSPSFTHVYSGG-RDGNIYRTDLRNP--AKSTLICKEDA-PVLKLHLHEHDNSVWVTTTDSSI 321 (735)
T ss_pred EeeCCCcceEEecC-CCCcEEecccCCc--hhheEeecCCC-chhhhhhccccCCceeeeccccc
Confidence 56667777777765 4567888777653 33333332211 112244442 2347998887653
No 252
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=90.99 E-value=1.4 Score=36.23 Aligned_cols=147 Identities=10% Similarity=0.008 Sum_probs=81.8
Q ss_pred ccEEEcCCC-cEEEEe-CCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEecc
Q 026118 13 EDVSVDGNG-VLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQF 88 (243)
Q Consensus 13 ~~i~~d~~g-~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~~ 88 (243)
.++-+.+-. .|..+. .++.|+.+|. .++...-.....+++ +|..+|++-.+.+++.+..+|.+| ..-.+++.. .
T Consensus 191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN-~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v-~ 268 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN-TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV-H 268 (433)
T ss_pred eEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc-ceecCccccceeeccccccceehhhhhhcccchh-h
Confidence 345555544 344444 6788999983 333222222235667 999999776535555667899998 432122111 1
Q ss_pred CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe--eccccccceEEEcCCCCEE
Q 026118 89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV--LDGLYFANGVALSEDERFL 166 (243)
Q Consensus 89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~--~~~~~~~~gi~~~~dg~~l 166 (243)
. ...+.+-++.++|-|.=+++.+- ..+-+||.++. ++-+-+ ..-.+...++.++-|.+++
T Consensus 269 ~-dhvsAV~dVdfsptG~Efvsgsy---------------DksIRIf~~~~--~~SRdiYhtkRMq~V~~Vk~S~Dskyi 330 (433)
T KOG0268|consen 269 K-DHVSAVMDVDFSPTGQEFVSGSY---------------DKSIRIFPVNH--GHSRDIYHTKRMQHVFCVKYSMDSKYI 330 (433)
T ss_pred c-ccceeEEEeccCCCcchhccccc---------------cceEEEeecCC--CcchhhhhHhhhheeeEEEEeccccEE
Confidence 1 11244567788899988887432 12335665554 333322 1234566788999999965
Q ss_pred EEEEcCCCeEEEEE
Q 026118 167 VVCESWKFRCVKHF 180 (243)
Q Consensus 167 ~v~~~~~~~i~~~~ 180 (243)
+-+ +..+.|..+.
T Consensus 331 ~SG-Sdd~nvRlWk 343 (433)
T KOG0268|consen 331 ISG-SDDGNVRLWK 343 (433)
T ss_pred Eec-CCCcceeeee
Confidence 543 4444444443
No 253
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=90.66 E-value=13 Score=33.91 Aligned_cols=190 Identities=14% Similarity=0.091 Sum_probs=88.1
Q ss_pred CcccEEEcCCCcEEEEeCCCcEEEEccC--CceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEE
Q 026118 11 HPEDVSVDGNGVLYTATGDGWIKRMHPN--GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLV 85 (243)
Q Consensus 11 ~p~~i~~d~~g~l~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~ 85 (243)
.-.++++..+..+..+..++.+-.++.+ ....++.. +... +..|-|.++.+.++...+-+..|+ ... ++.+.
T Consensus 375 dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~--~y~l-~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~ 451 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC--GYIL-ASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR 451 (888)
T ss_pred heeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc--ccEE-EEEecCCCceEEEeccCCceEEEEeehhhhhhhhh
Confidence 3456667666655555456667777632 23333322 3444 445556666634443333366777 443 33322
Q ss_pred eccCCCcccCCccEEEcCCCcEEEEeCCCCCCccccccccccc--CCCceEEEEeCCCCeeEEeeccccccceEEEcCCC
Q 026118 86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSG--EPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE 163 (243)
Q Consensus 86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~--~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg 163 (243)
.. ...+..|...||+.-+++.+... -...|+..+... ....++..+-.+ +. .+-....-.+.+||||
T Consensus 452 AH-----dgaIWsi~~~pD~~g~vT~saDk-tVkfWdf~l~~~~~gt~~k~lsl~~~----rt-Lel~ddvL~v~~Spdg 520 (888)
T KOG0306|consen 452 AH-----DGAIWSISLSPDNKGFVTGSADK-TVKFWDFKLVVSVPGTQKKVLSLKHT----RT-LELEDDVLCVSVSPDG 520 (888)
T ss_pred cc-----ccceeeeeecCCCCceEEecCCc-EEEEEeEEEEeccCcccceeeeeccc----eE-EeccccEEEEEEcCCC
Confidence 11 12455677888888777643210 000111000000 000111111110 00 0001223468899999
Q ss_pred CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecC
Q 026118 164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKM 218 (243)
Q Consensus 164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~ 218 (243)
++|.|+ -.++.+..|-.+.-.+ -...+...+| .-.|.+++|+++.+.....
T Consensus 521 k~LaVs-LLdnTVkVyflDtlKF-flsLYGHkLP--V~smDIS~DSklivTgSAD 571 (888)
T KOG0306|consen 521 KLLAVS-LLDNTVKVYFLDTLKF-FLSLYGHKLP--VLSMDISPDSKLIVTGSAD 571 (888)
T ss_pred cEEEEE-eccCeEEEEEecceee-eeeecccccc--eeEEeccCCcCeEEeccCC
Confidence 977776 4678888887764211 0011111222 1235556677766654433
No 254
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=90.55 E-value=8.9 Score=31.76 Aligned_cols=141 Identities=12% Similarity=0.022 Sum_probs=70.4
Q ss_pred CcEEEEe-----CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCC-----Cc-----EEEEe-cCC-cE
Q 026118 21 GVLYTAT-----GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-----QG-----LLKVS-EEG-VT 82 (243)
Q Consensus 21 g~l~~~~-----~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-----~g-----l~~~~-~~g-~~ 82 (243)
.++|+.+ -.++++.+| .++++.--... +. ...++++++|+.+|+++.. .| |-.+| .+- .+
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~-g~-~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~ 80 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDT-GF-LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPT 80 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEE-ES-SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEE
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEEeec-cc-CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCccc
Confidence 3677765 135788888 45554432221 11 2156788999987887631 12 45666 332 22
Q ss_pred EEEeccCC---CcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEE
Q 026118 83 VLVSQFNG---SQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVA 158 (243)
Q Consensus 83 ~~~~~~~~---~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~ 158 (243)
.-...+.+ ......+-++.+.||+ +||.+.. +...|-.+|.+.+++..... ......+.
T Consensus 81 ~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T----------------Pa~SVtVVDl~~~kvv~ei~-~PGC~~iy 143 (342)
T PF06433_consen 81 GEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT----------------PATSVTVVDLAAKKVVGEID-TPGCWLIY 143 (342)
T ss_dssp EEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES----------------SSEEEEEEETTTTEEEEEEE-GTSEEEEE
T ss_pred ceEecCCcchheecccccceEEccCCcEEEEEccC----------------CCCeEEEEECCCCceeeeec-CCCEEEEE
Confidence 11122222 1123556678888886 6666432 33478889998776644321 11112222
Q ss_pred EcCCCCEEEEEEcCCCeEEEEEee
Q 026118 159 LSEDERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 159 ~~~dg~~l~v~~~~~~~i~~~~~~ 182 (243)
-+... -+.+-+.++++..+.++
T Consensus 144 P~~~~--~F~~lC~DGsl~~v~Ld 165 (342)
T PF06433_consen 144 PSGNR--GFSMLCGDGSLLTVTLD 165 (342)
T ss_dssp EEETT--EEEEEETTSCEEEEEET
T ss_pred ecCCC--ceEEEecCCceEEEEEC
Confidence 12222 23344556666666665
No 255
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=90.54 E-value=9.8 Score=32.21 Aligned_cols=151 Identities=11% Similarity=-0.016 Sum_probs=79.8
Q ss_pred cEEEcC--CCcEEEEeCCCcEEEEccC--Cc------eeEecccCCccccceEEccC-CCEEEEEeCCC-cEEEEe-cCC
Q 026118 14 DVSVDG--NGVLYTATGDGWIKRMHPN--GT------WEDWHQVGSQSLLGLTTTKE-NNVIIVCDSQQ-GLLKVS-EEG 80 (243)
Q Consensus 14 ~i~~d~--~g~l~~~~~~~~i~~~~~~--g~------~~~~~~~~~~~~~~i~~~~~-g~l~~v~~~~~-gl~~~~-~~g 80 (243)
+|++.+ .|+|..+..++.|..+|.+ +. .+.+..........+++.+. ..+ |.+-... .|..+| +.+
T Consensus 182 glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~l-F~sv~dd~~L~iwD~R~~ 260 (422)
T KOG0264|consen 182 GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDL-FGSVGDDGKLMIWDTRSN 260 (422)
T ss_pred ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhh-heeecCCCeEEEEEcCCC
Confidence 344443 5667777788888888722 11 11111111111114455432 234 4433333 455666 432
Q ss_pred cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE--eeccccccceEE
Q 026118 81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL--VLDGLYFANGVA 158 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~--~~~~~~~~~gi~ 158 (243)
......... .....++++++.|-+...+++.+ ..+.|..+|+.+-.... +.........+.
T Consensus 261 ~~~~~~~~~-ah~~~vn~~~fnp~~~~ilAT~S----------------~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~ 323 (422)
T KOG0264|consen 261 TSKPSHSVK-AHSAEVNCVAFNPFNEFILATGS----------------ADKTVALWDLRNLNKPLHTFEGHEDEVFQVE 323 (422)
T ss_pred CCCCccccc-ccCCceeEEEeCCCCCceEEecc----------------CCCcEEEeechhcccCceeccCCCcceEEEE
Confidence 000011011 11235678899985544444321 34678888886322211 122234457899
Q ss_pred EcCCCCEEEEEEcCCCeEEEEEee
Q 026118 159 LSEDERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 159 ~~~dg~~l~v~~~~~~~i~~~~~~ 182 (243)
|+|....+..+...++++..+|++
T Consensus 324 WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 324 WSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred eCCCCCceeEecccCCcEEEEecc
Confidence 999998898888888999999986
No 256
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=90.30 E-value=3.8 Score=33.90 Aligned_cols=51 Identities=10% Similarity=0.015 Sum_probs=33.3
Q ss_pred CCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEe
Q 026118 130 PHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFL 181 (243)
Q Consensus 130 ~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~ 181 (243)
...+|+.||...+.+..-..-...+|+|+|+|. .+.+++...+..+|-||.
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPe-afnF~~a~ED~nlY~~Dm 258 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVILTMRTNTICWNPE-AFNFVAANEDHNLYTYDM 258 (433)
T ss_pred cCCceEEEecccCCccceeeeeccccceecCcc-ccceeeccccccceehhh
Confidence 446788899875543321222356899999994 457777666677776664
No 257
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=90.22 E-value=8.6 Score=31.08 Aligned_cols=145 Identities=11% Similarity=0.004 Sum_probs=78.7
Q ss_pred ccEEEcC-CCcEEEEeCCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccC
Q 026118 13 EDVSVDG-NGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFN 89 (243)
Q Consensus 13 ~~i~~d~-~g~l~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~ 89 (243)
.+|-+++ .+.|.++.++|.+..++-.............|....+|..+-+. |+++.++-|.++| .++ ...+....
T Consensus 17 S~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~-~~G~~dg~vr~~Dln~~~~~~igth~- 94 (323)
T KOG1036|consen 17 SSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTI-VTGGLDGQVRRYDLNTGNEDQIGTHD- 94 (323)
T ss_pred eeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceE-EEeccCceEEEEEecCCcceeeccCC-
Confidence 4577775 55788998999988887222111111112345447777666666 8888777788999 555 44444321
Q ss_pred CCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEE
Q 026118 90 GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC 169 (243)
Q Consensus 90 ~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~ 169 (243)
..+.+|...+.-...++.+ ....|-.+|+......-..........+ +-.|+.|.|+
T Consensus 95 ----~~i~ci~~~~~~~~vIsgs-----------------WD~~ik~wD~R~~~~~~~~d~~kkVy~~--~v~g~~LvVg 151 (323)
T KOG1036|consen 95 ----EGIRCIEYSYEVGCVISGS-----------------WDKTIKFWDPRNKVVVGTFDQGKKVYCM--DVSGNRLVVG 151 (323)
T ss_pred ----CceEEEEeeccCCeEEEcc-----------------cCccEEEEeccccccccccccCceEEEE--eccCCEEEEe
Confidence 2344565555434444432 2345666777531111111111222223 3345557775
Q ss_pred EcCCCeEEEEEeec
Q 026118 170 ESWKFRCVKHFLKV 183 (243)
Q Consensus 170 ~~~~~~i~~~~~~~ 183 (243)
. .+..+..||+..
T Consensus 152 ~-~~r~v~iyDLRn 164 (323)
T KOG1036|consen 152 T-SDRKVLIYDLRN 164 (323)
T ss_pred e-cCceEEEEEccc
Confidence 4 456788888753
No 258
>PHA02713 hypothetical protein; Provisional
Probab=90.14 E-value=13 Score=33.18 Aligned_cols=81 Identities=12% Similarity=0.061 Sum_probs=42.8
Q ss_pred ceEEEEeCCCCeeEEeecc--ccccceEEEcCCCCEEEEEEcCC------CeEEEEEeecCCCcceEEeccCCCC-CCCc
Q 026118 132 GVLLKYDPSTNQTSLVLDG--LYFANGVALSEDERFLVVCESWK------FRCVKHFLKVSGRTDREIFIDNLPG-GPDN 202 (243)
Q Consensus 132 g~v~~~~~~~~~~~~~~~~--~~~~~gi~~~~dg~~l~v~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~ 202 (243)
..+.+|||.+.+++.+..- .....+++. -+++ ||+....+ ..+.+||+..+ ..++...+-... .-.+
T Consensus 432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~-~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~--~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVS-HKDD-IYVVCDIKDEKNVKTCIFRYNTNTY--NGWELITTTESRLSALH 507 (557)
T ss_pred ceEEEECCCCCeEeecCCCCcccccCcEEE-ECCE-EEEEeCCCCCCccceeEEEecCCCC--CCeeEccccCcccccce
Confidence 4699999999888765421 112234443 3455 99875321 34678887641 123333321111 1223
Q ss_pred eEECCCCCEEEEEec
Q 026118 203 VNLARDGSFWISIIK 217 (243)
Q Consensus 203 i~~d~~G~lwv~~~~ 217 (243)
++. -+|.||+....
T Consensus 508 ~~~-~~~~iyv~Gg~ 521 (557)
T PHA02713 508 TIL-HDNTIMMLHCY 521 (557)
T ss_pred eEE-ECCEEEEEeee
Confidence 333 37789986543
No 259
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.13 E-value=7.4 Score=32.50 Aligned_cols=109 Identities=11% Similarity=-0.007 Sum_probs=62.9
Q ss_pred ceEEccC--CCEEEEEeCCCcEEEEe-cCCcEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccC
Q 026118 54 GLTTTKE--NNVIIVCDSQQGLLKVS-EEGVTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGE 129 (243)
Q Consensus 54 ~i~~~~~--g~l~~v~~~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~ 129 (243)
++.|-+. ...+..++..+.+..|| ..+.+++...... -+.+.++...|+|+ +|+++.
T Consensus 207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~--E~~is~~~l~p~gn~Iy~gn~----------------- 267 (412)
T KOG3881|consen 207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL--ENPISSTGLTPSGNFIYTGNT----------------- 267 (412)
T ss_pred cceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc--cCcceeeeecCCCcEEEEecc-----------------
Confidence 4555432 33314444445577777 5555554431111 23455778889887 666653
Q ss_pred CCceEEEEeCCCCeeEEe-e-ccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118 130 PHGVLLKYDPSTNQTSLV-L-DGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 130 ~~g~v~~~~~~~~~~~~~-~-~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
.+.|..+|..++.+-.. . .-...+.+|..+|.+.+|-.+ .-+.-|..+|.+.
T Consensus 268 -~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~-GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 268 -KGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASC-GLDRYVRIHDIKT 321 (412)
T ss_pred -cchhheecccCceeeccccCCccCCcceEEEcCCCceEEee-ccceeEEEeeccc
Confidence 35788899886654432 2 223567889999988844433 3445566677654
No 260
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=90.09 E-value=9.9 Score=31.57 Aligned_cols=179 Identities=12% Similarity=0.066 Sum_probs=94.1
Q ss_pred cccCCcccEEEcCCC-cEEEEeCCCcEEEEccCCceeEec-ccCCccccceEEc-cCCCEEEEEeCCCcEEEEe-cCC--
Q 026118 7 GIVNHPEDVSVDGNG-VLYTATGDGWIKRMHPNGTWEDWH-QVGSQSLLGLTTT-KENNVIIVCDSQQGLLKVS-EEG-- 80 (243)
Q Consensus 7 g~~~~p~~i~~d~~g-~l~~~~~~~~i~~~~~~g~~~~~~-~~~~~~~~~i~~~-~~g~l~~v~~~~~gl~~~~-~~g-- 80 (243)
|.+..-.++..-|.- .|..+..+..+..+|-..+...+. .....+...+.+. .|+.+ +.+..+.-|..+| ..|
T Consensus 233 GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqv-it~S~D~tvrlWDl~agkt 311 (460)
T KOG0285|consen 233 GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQV-ITGSHDSTVRLWDLRAGKT 311 (460)
T ss_pred cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCce-EEecCCceEEEeeeccCce
Confidence 444555556666533 455555666677777322222221 1122343244443 35666 7877766777888 666
Q ss_pred cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-eeccccccceEEE
Q 026118 81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VLDGLYFANGVAL 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-~~~~~~~~~gi~~ 159 (243)
+..+... ...+.+++..|.-.+|.+.+. ..+-+.+...|++.. +.......+.++.
T Consensus 312 ~~tlt~h-----kksvral~lhP~e~~fASas~------------------dnik~w~~p~g~f~~nlsgh~~iintl~~ 368 (460)
T KOG0285|consen 312 MITLTHH-----KKSVRALCLHPKENLFASASP------------------DNIKQWKLPEGEFLQNLSGHNAIINTLSV 368 (460)
T ss_pred eEeeecc-----cceeeEEecCCchhhhhccCC------------------ccceeccCCccchhhccccccceeeeeee
Confidence 2222211 234567788887777776332 123333333233322 1222345677888
Q ss_pred cCCCCEEEEEEcCCCeEEEEEeec-CCCcceEEeccCCCCC------CCceEECCCCCEEE
Q 026118 160 SEDERFLVVCESWKFRCVKHFLKV-SGRTDREIFIDNLPGG------PDNVNLARDGSFWI 213 (243)
Q Consensus 160 ~~dg~~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~------~~~i~~d~~G~lwv 213 (243)
..|| ++++...++.++.+|... ..+...+... .+|. ....++|..|.-.|
T Consensus 369 nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~v--qpGSl~sEagI~as~fDktg~rli 425 (460)
T KOG0285|consen 369 NSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIV--QPGSLESEAGIFASCFDKTGSRLI 425 (460)
T ss_pred ccCc--eEEEcCCceEEEEEecCcCcccccccccc--cCCccccccceeEEeecccCceEE
Confidence 7777 677767788899988763 3333332222 2221 23366777776444
No 261
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=90.02 E-value=9 Score=30.97 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=69.3
Q ss_pred ccccceEEccCCCEEEEEeCCCcEEEEecCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCccccccccccc
Q 026118 50 QSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSG 128 (243)
Q Consensus 50 ~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~ 128 (243)
..+ .+.|+|+|..+..+..+..|+.++..| .+-+.. ..+ ....+.++...+|++..++.+.
T Consensus 49 eI~-~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~-lkg-HsgAVM~l~~~~d~s~i~S~gt--------------- 110 (338)
T KOG0265|consen 49 EIY-TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWV-LKG-HSGAVMELHGMRDGSHILSCGT--------------- 110 (338)
T ss_pred eEE-EEEECCCCCeEeecCCcceEEEEeccccccceee-ecc-ccceeEeeeeccCCCEEEEecC---------------
Confidence 345 688999999833333445677777333 332221 111 1234567777789987776432
Q ss_pred CCCceEEEEeCCCCeeEE-eeccccccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118 129 EPHGVLLKYDPSTNQTSL-VLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 129 ~~~g~v~~~~~~~~~~~~-~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 182 (243)
.-.|+.+|..+|+..+ ........|.+....-|-.|..+...++++..+|..
T Consensus 111 --Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R 163 (338)
T KOG0265|consen 111 --DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR 163 (338)
T ss_pred --CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence 2478889998886544 333345556666555666677777777788888875
No 262
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.51 E-value=8.6 Score=30.07 Aligned_cols=173 Identities=14% Similarity=0.178 Sum_probs=93.1
Q ss_pred EEEcCCCcEEEEe-CCCcEEEEcc-CCc-eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEecc
Q 026118 15 VSVDGNGVLYTAT-GDGWIKRMHP-NGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVSQF 88 (243)
Q Consensus 15 i~~d~~g~l~~~~-~~~~i~~~~~-~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~~~ 88 (243)
+-+..+|+.-++. .+..|..++| .|. ++.+.-.+.... .++...|..-+-.+..+..+..+| .+| .+.+...
T Consensus 23 vryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVl-D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH- 100 (307)
T KOG0316|consen 23 VRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVL-DAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGH- 100 (307)
T ss_pred EEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceee-eccccccccccccCCCCceEEEEEcccCeeeeecccc-
Confidence 4445577644444 4555666774 344 333433223334 555555554414444445688888 777 3333221
Q ss_pred CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee---ccccccceEEEcCCCCE
Q 026118 89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL---DGLYFANGVALSEDERF 165 (243)
Q Consensus 89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~---~~~~~~~gi~~~~dg~~ 165 (243)
...+|.+.+..+..+.++.+- ...+-.+|=.+..+++++ +......++.+ .+.
T Consensus 101 ----~aqVNtV~fNeesSVv~Sgsf-----------------D~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~h- 156 (307)
T KOG0316|consen 101 ----LAQVNTVRFNEESSVVASGSF-----------------DSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEH- 156 (307)
T ss_pred ----cceeeEEEecCcceEEEeccc-----------------cceeEEEEcccCCCCccchhhhhcCceeEEEe--ccc-
Confidence 235677788877777776321 123444444444444432 22334444544 344
Q ss_pred EEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCC-CceEECCCCCE-EEEEecCC
Q 026118 166 LVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGP-DNVNLARDGSF-WISIIKMD 219 (243)
Q Consensus 166 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~d~~G~l-wv~~~~~~ 219 (243)
..++...++.+..||+..+.+.. ..-+.| ..+.+.++|+. .++.....
T Consensus 157 eIvaGS~DGtvRtydiR~G~l~s------Dy~g~pit~vs~s~d~nc~La~~l~st 206 (307)
T KOG0316|consen 157 EIVAGSVDGTVRTYDIRKGTLSS------DYFGHPITSVSFSKDGNCSLASSLDST 206 (307)
T ss_pred EEEeeccCCcEEEEEeecceeeh------hhcCCcceeEEecCCCCEEEEeeccce
Confidence 66777788999999987543211 122233 55889999995 44444433
No 263
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=89.39 E-value=4.1 Score=33.98 Aligned_cols=25 Identities=16% Similarity=0.027 Sum_probs=15.7
Q ss_pred cccceEEEcCCCCEEEEEEcCCCeE
Q 026118 152 YFANGVALSEDERFLVVCESWKFRC 176 (243)
Q Consensus 152 ~~~~gi~~~~dg~~l~v~~~~~~~i 176 (243)
....++.++||+++|.+.......|
T Consensus 101 ~~~~~~~WSpd~~~la~~~~d~~~v 125 (353)
T PF00930_consen 101 DRRSAVWWSPDSKYLAFLRFDEREV 125 (353)
T ss_dssp SSSBSEEE-TTSSEEEEEEEE-TTS
T ss_pred ccccceEECCCCCEEEEEEECCcCC
Confidence 3457899999999887664443333
No 264
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=89.18 E-value=16 Score=32.96 Aligned_cols=141 Identities=13% Similarity=0.120 Sum_probs=66.2
Q ss_pred EEEcCCCcEEEEeCCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEecCC--cEEEEeccCCCc
Q 026118 15 VSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQ 92 (243)
Q Consensus 15 i~~d~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g--~~~~~~~~~~~~ 92 (243)
++.-+++.+..+..+..|..+..+...+.+.- ......++++-+++.+ ..+..++-|..++-+| ...+.. .
T Consensus 146 v~~l~e~~~vTgsaDKtIklWk~~~~l~tf~g-HtD~VRgL~vl~~~~f-lScsNDg~Ir~w~~~ge~l~~~~g-----h 218 (745)
T KOG0301|consen 146 VASLPENTYVTGSADKTIKLWKGGTLLKTFSG-HTDCVRGLAVLDDSHF-LSCSNDGSIRLWDLDGEVLLEMHG-----H 218 (745)
T ss_pred eeecCCCcEEeccCcceeeeccCCchhhhhcc-chhheeeeEEecCCCe-EeecCCceEEEEeccCceeeeeec-----c
Confidence 33334443333345555555543222333321 1222337888777777 5665433344445545 333221 1
Q ss_pred ccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC
Q 026118 93 LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW 172 (243)
Q Consensus 93 ~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~ 172 (243)
.++++++....++.+.+++.. ...-++|..+. ..+...++...-+ ...+-.+|+ ++++. .
T Consensus 219 tn~vYsis~~~~~~~Ivs~gE---------------DrtlriW~~~e-~~q~I~lPttsiW--sa~~L~NgD-Ivvg~-S 278 (745)
T KOG0301|consen 219 TNFVYSISMALSDGLIVSTGE---------------DRTLRIWKKDE-CVQVITLPTTSIW--SAKVLLNGD-IVVGG-S 278 (745)
T ss_pred ceEEEEEEecCCCCeEEEecC---------------CceEEEeecCc-eEEEEecCccceE--EEEEeeCCC-EEEec-c
Confidence 246667775666677877543 12234555441 1111111111111 122224677 77774 4
Q ss_pred CCeEEEEEee
Q 026118 173 KFRCVKHFLK 182 (243)
Q Consensus 173 ~~~i~~~~~~ 182 (243)
++.|+.|..+
T Consensus 279 DG~VrVfT~~ 288 (745)
T KOG0301|consen 279 DGRVRVFTVD 288 (745)
T ss_pred CceEEEEEec
Confidence 6778888765
No 265
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=88.49 E-value=2.4 Score=36.87 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=32.7
Q ss_pred ccccceEEccCCCEEEEEeCCCc-EEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEE
Q 026118 50 QSLLGLTTTKENNVIIVCDSQQG-LLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFT 110 (243)
Q Consensus 50 ~~~~~i~~~~~g~l~~v~~~~~g-l~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~ 110 (243)
.++ .++|++||+.|..+. .+| |..|+ .+. ..-+...+ ....-+++.+|||++.++
T Consensus 292 ~in-~f~FS~DG~~LA~VS-qDGfLRvF~fdt~eLlg~mkSY----FGGLLCvcWSPDGKyIvt 349 (636)
T KOG2394|consen 292 SIN-EFAFSPDGKYLATVS-QDGFLRIFDFDTQELLGVMKSY----FGGLLCVCWSPDGKYIVT 349 (636)
T ss_pred ccc-ceeEcCCCceEEEEe-cCceEEEeeccHHHHHHHHHhh----ccceEEEEEcCCccEEEe
Confidence 345 789999999844444 345 33444 332 11111122 234558899999998887
No 266
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=88.34 E-value=7.6 Score=34.77 Aligned_cols=139 Identities=21% Similarity=0.179 Sum_probs=72.9
Q ss_pred CCcEEEEeCCCcEEEEc--cCCceeE------ecc-cCCccccceEEccC-CCEEEEEeCCCcEEEEe-cCC--cEEEEe
Q 026118 20 NGVLYTATGDGWIKRMH--PNGTWED------WHQ-VGSQSLLGLTTTKE-NNVIIVCDSQQGLLKVS-EEG--VTVLVS 86 (243)
Q Consensus 20 ~g~l~~~~~~~~i~~~~--~~g~~~~------~~~-~~~~~~~~i~~~~~-g~l~~v~~~~~gl~~~~-~~g--~~~~~~ 86 (243)
+.+|-++.+++.|..+. .+|-... ... ...... .|.|.|- -++|.++.++.-|-.+| .++ ...+..
T Consensus 640 ~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~-slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g 718 (1012)
T KOG1445|consen 640 DERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT-SLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG 718 (1012)
T ss_pred hHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE-EEEecchhhhHhhhhhccceeeeeehhhhhhhheecc
Confidence 34666777667664443 3331111 111 112223 5555542 22334554444455666 444 222221
Q ss_pred ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc----cccceEEEcCC
Q 026118 87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL----YFANGVALSED 162 (243)
Q Consensus 87 ~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~----~~~~gi~~~~d 162 (243)
. ...+.+++.+|+|+...+.- ..|.|..|+|..++ +++.++. .....|.|.=|
T Consensus 719 H-----tdqIf~~AWSpdGr~~AtVc-----------------KDg~~rVy~Prs~e-~pv~Eg~gpvgtRgARi~wacd 775 (1012)
T KOG1445|consen 719 H-----TDQIFGIAWSPDGRRIATVC-----------------KDGTLRVYEPRSRE-QPVYEGKGPVGTRGARILWACD 775 (1012)
T ss_pred C-----cCceeEEEECCCCcceeeee-----------------cCceEEEeCCCCCC-CccccCCCCccCcceeEEEEec
Confidence 1 23577999999999777631 35788899998554 3333321 12234777778
Q ss_pred CCEEEEEEcCC---CeEEEEEee
Q 026118 163 ERFLVVCESWK---FRCVKHFLK 182 (243)
Q Consensus 163 g~~l~v~~~~~---~~i~~~~~~ 182 (243)
|+++.++.... .+|..|+.+
T Consensus 776 gr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 776 GRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred CcEEEEecccccchhhhhhhhhh
Confidence 88777775432 345556544
No 267
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=88.24 E-value=18 Score=32.08 Aligned_cols=115 Identities=19% Similarity=0.280 Sum_probs=62.9
Q ss_pred cEEEc-CCCcEEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEE-EEe-cCC--cEEEE--
Q 026118 14 DVSVD-GNGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLL-KVS-EEG--VTVLV-- 85 (243)
Q Consensus 14 ~i~~d-~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~-~~~-~~g--~~~~~-- 85 (243)
.|+.+ +.=.||++.....|||++ ..|++..-.......++.+.+++-..| +++....|.+ .+| .+. +..+.
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgL-la~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGL-LACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccce-EEecccCceEEEecchhhhhheeeecc
Confidence 36666 355788887777899999 567654322222222226667665556 4554445544 555 332 32221
Q ss_pred ec----cCCCcccCCccEEEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe
Q 026118 86 SQ----FNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV 147 (243)
Q Consensus 86 ~~----~~~~~~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~ 147 (243)
.. +.......+..+.++.+| ++-+++ ..|.+|.||..+.+...+
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGt------------------s~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGT------------------STGSVLIYDLRASKPLLV 265 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEeec------------------cCCcEEEEEcccCCceee
Confidence 11 111123345566776666 344443 457899999986554443
No 268
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=88.20 E-value=20 Score=32.54 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=35.8
Q ss_pred CcccEEEcCCCc-EEEEeCCCcEEEEcc-CCce-eEecccCCccccceEEccCCCEEEEEeC
Q 026118 11 HPEDVSVDGNGV-LYTATGDGWIKRMHP-NGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDS 69 (243)
Q Consensus 11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~i~~~~~g~l~~v~~~ 69 (243)
.-..+++-|||. |.++ .+.+++.+|+ +|.. .+......... .++.+.||++ |....
T Consensus 14 ci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtLKgHKDtVy-cVAys~dGkr-FASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPLKGHKDTVY-CVAYAKDGKR-FASGS 72 (1081)
T ss_pred chheeEECCCCceEEEe-cCCEEEEEeCCCcccccccccccceEE-EEEEccCCce-eccCC
Confidence 445688999995 5555 5568999994 5543 33222222345 7899999998 66543
No 269
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=88.12 E-value=14 Score=30.66 Aligned_cols=167 Identities=11% Similarity=0.068 Sum_probs=85.7
Q ss_pred cCCcccEEEcC--CCcEEEEeCCCcEEEE--ccCCceeEecc----cCCcccc-ceEEc-cCCCEEEEEeCCCcEEEEe-
Q 026118 9 VNHPEDVSVDG--NGVLYTATGDGWIKRM--HPNGTWEDWHQ----VGSQSLL-GLTTT-KENNVIIVCDSQQGLLKVS- 77 (243)
Q Consensus 9 ~~~p~~i~~d~--~g~l~~~~~~~~i~~~--~~~g~~~~~~~----~~~~~~~-~i~~~-~~g~l~~v~~~~~gl~~~~- 77 (243)
+.-|.|..+-| +...+.-..+|.+..+ +.+|+...... ....|.. .-++. ..+++ |+.++.+.|+.++
T Consensus 134 i~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~-~F~Sy~G~v~~~dl 212 (342)
T PF06433_consen 134 IDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRL-YFVSYEGNVYSADL 212 (342)
T ss_dssp EEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEE-EEEBTTSEEEEEEE
T ss_pred ecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeE-EEEecCCEEEEEec
Confidence 44566654443 3455555578887554 46776543221 1112211 12233 33456 6667767788888
Q ss_pred cCC-cEEEEec--cC------CCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe
Q 026118 78 EEG-VTVLVSQ--FN------GSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV 147 (243)
Q Consensus 78 ~~g-~~~~~~~--~~------~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~ 147 (243)
... .+..... .. +=....-+-+++++ .++||+-...+ ....+ ......||.||+++++...-
T Consensus 213 sg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g--~~gsH------KdpgteVWv~D~~t~krv~R 284 (342)
T PF06433_consen 213 SGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQG--GEGSH------KDPGTEVWVYDLKTHKRVAR 284 (342)
T ss_dssp TTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE----TT-T------TS-EEEEEEEETTTTEEEEE
T ss_pred cCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCC--CCCCc------cCCceEEEEEECCCCeEEEE
Confidence 333 3322210 00 00112334477775 57888864211 11000 11234699999998764432
Q ss_pred eccccccceEEEcCCCC-EEEEEEcCCCeEEEEEeecC
Q 026118 148 LDGLYFANGVALSEDER-FLVVCESWKFRCVKHFLKVS 184 (243)
Q Consensus 148 ~~~~~~~~gi~~~~dg~-~l~v~~~~~~~i~~~~~~~~ 184 (243)
++-.....+|+++.|.+ .||..+..++.|..||..++
T Consensus 285 i~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 285 IPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred EeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 22122345899998887 56666666788999997653
No 270
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=87.96 E-value=14 Score=30.66 Aligned_cols=86 Identities=15% Similarity=0.123 Sum_probs=48.5
Q ss_pred CCCceEEEEeCCCCeeEEeecc-ccccceEEEcCCCCEEEEEEcCCCeEEE-EEeecCCCcceEEeccC-CCCCCCceEE
Q 026118 129 EPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDERFLVVCESWKFRCVK-HFLKVSGRTDREIFIDN-LPGGPDNVNL 205 (243)
Q Consensus 129 ~~~g~v~~~~~~~~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~-~~~~~~~~~~~~~~~~~-~~~~~~~i~~ 205 (243)
...|.|+.+|..+-+....... ......|+|+++|+ +..+-...+.|.| |....+ .....|-.+ .+.....|++
T Consensus 150 ~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G--~kl~eFRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 150 TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEG--QKLYEFRRGTYPVSIYSLSF 226 (391)
T ss_pred CCCceEEEEEcccceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCc--cEeeeeeCCceeeEEEEEEE
Confidence 3467899999875443333322 23346799999999 5555456677665 444321 111122111 1223455889
Q ss_pred CCCCCEEEEEec
Q 026118 206 ARDGSFWISIIK 217 (243)
Q Consensus 206 d~~G~lwv~~~~ 217 (243)
++++.+..++.+
T Consensus 227 s~ds~~L~~sS~ 238 (391)
T KOG2110|consen 227 SPDSQFLAASSN 238 (391)
T ss_pred CCCCCeEEEecC
Confidence 999886665543
No 271
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=87.70 E-value=1.8 Score=39.91 Aligned_cols=65 Identities=14% Similarity=0.163 Sum_probs=48.6
Q ss_pred cccEEEcCCCcEEEEeCCCcEEEEccCCc-eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe
Q 026118 12 PEDVSVDGNGVLYTATGDGWIKRMHPNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (243)
Q Consensus 12 p~~i~~d~~g~l~~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~ 77 (243)
=.+++.+.+|.|-+|+.+|.|..++..|+ .++.....+.|..+|.+..||++ .+++...-|+.++
T Consensus 580 Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkw-ilaTc~tyLlLi~ 645 (794)
T PF08553_consen 580 FSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKW-ILATCKTYLLLID 645 (794)
T ss_pred ceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcE-EEEeecceEEEEE
Confidence 34678888999999999999999985443 33333344677668999999998 7777766677665
No 272
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=87.61 E-value=19 Score=31.69 Aligned_cols=84 Identities=14% Similarity=0.140 Sum_probs=48.9
Q ss_pred cEEEEeCCCcEEEEccCCceeEeccc-CCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCCcc
Q 026118 22 VLYTATGDGWIKRMHPNGTWEDWHQV-GSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFAND 98 (243)
Q Consensus 22 ~l~~~~~~~~i~~~~~~g~~~~~~~~-~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~ 98 (243)
.+.+++.+|++..++..+++...... .+... +-..++||.- .++...+|++++- .+| .+..... .-..+.+
T Consensus 77 ~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~-~gRW~~dGtg-Llt~GEDG~iKiWSrsGMLRStl~Q----~~~~v~c 150 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSARVERSISAHAAAIS-SGRWSPDGAG-LLTAGEDGVIKIWSRSGMLRSTVVQ----NEESIRC 150 (737)
T ss_pred eEEEEcCCceEEEecccchhhhhhhhhhhhhh-hcccCCCCce-eeeecCCceEEEEeccchHHHHHhh----cCceeEE
Confidence 45677788889888888877654331 11112 3345678876 4444467888777 777 3321111 1234667
Q ss_pred EEEcCCC-cEEEEe
Q 026118 99 VIEASDG-SLYFTV 111 (243)
Q Consensus 99 l~~d~~G-~l~v~~ 111 (243)
++.+|+. ++.++.
T Consensus 151 ~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQ 164 (737)
T ss_pred EEECCCCCceEEec
Confidence 7888764 455553
No 273
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.55 E-value=18 Score=32.43 Aligned_cols=63 Identities=8% Similarity=0.146 Sum_probs=36.8
Q ss_pred ccEEEcCCCcEEEEe-CCCcEEEEccC--CceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe
Q 026118 13 EDVSVDGNGVLYTAT-GDGWIKRMHPN--GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (243)
Q Consensus 13 ~~i~~d~~g~l~~~~-~~~~i~~~~~~--g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~ 77 (243)
-+++-.+.|.++++. ..+-|..+|+. .++....-...+.- .+.++.||+. .+.....|..++-
T Consensus 175 YSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr-~ll~~dDGt~-~ls~sSDgtIrlW 240 (735)
T KOG0308|consen 175 YSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR-VLLVNDDGTR-LLSASSDGTIRLW 240 (735)
T ss_pred eeeecCCcceEEEecCcccceEEeccccccceeeeeccccceE-EEEEcCCCCe-EeecCCCceEEee
Confidence 345556677777766 34456677743 23333322223444 7888999988 5555566766554
No 274
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=87.27 E-value=5.8 Score=33.36 Aligned_cols=147 Identities=14% Similarity=0.061 Sum_probs=82.2
Q ss_pred cccEEEcCCCcEEEEe-CCCcEEEEc-cCCceeEecc-cCCccccceEEccCCCEEEEEeCCCcEEEE-e-cCC--cEEE
Q 026118 12 PEDVSVDGNGVLYTAT-GDGWIKRMH-PNGTWEDWHQ-VGSQSLLGLTTTKENNVIIVCDSQQGLLKV-S-EEG--VTVL 84 (243)
Q Consensus 12 p~~i~~d~~g~l~~~~-~~~~i~~~~-~~g~~~~~~~-~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~-~-~~g--~~~~ 84 (243)
-.++++.++...|++. +++.|..+| ...+...... ....+. ++.-.|...+++.+. ...++++ | .+| .-.+
T Consensus 183 IRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk-svdWHP~kgLiasgs-kDnlVKlWDprSg~cl~tl 260 (464)
T KOG0284|consen 183 IRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK-SVDWHPTKGLIASGS-KDNLVKLWDPRSGSCLATL 260 (464)
T ss_pred hheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc-eeccCCccceeEEcc-CCceeEeecCCCcchhhhh
Confidence 4567888866666554 778888887 2222222212 222344 667777766734444 4456655 4 455 2111
Q ss_pred EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCC-CeeEEeeccccccceEEEcCCC
Q 026118 85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-NQTSLVLDGLYFANGVALSEDE 163 (243)
Q Consensus 85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~-~~~~~~~~~~~~~~gi~~~~dg 163 (243)
.. ..+.+-++.+.++|+...+-+. .-.+-.||-.+ .++..+.........++++|-.
T Consensus 261 h~-----HKntVl~~~f~~n~N~Llt~sk-----------------D~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~ 318 (464)
T KOG0284|consen 261 HG-----HKNTVLAVKFNPNGNWLLTGSK-----------------DQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLN 318 (464)
T ss_pred hh-----ccceEEEEEEcCCCCeeEEccC-----------------CceEEEEehhHhHHHHHhhcchhhheeecccccc
Confidence 11 1245667888899987776432 11334455431 1222222233445667888866
Q ss_pred CEEEEEEcCCCeEEEEEee
Q 026118 164 RFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 164 ~~l~v~~~~~~~i~~~~~~ 182 (243)
.-|+++...+++|..+...
T Consensus 319 ~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 319 ESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred ccceeeccCCCceEEEecc
Confidence 6688887778888877765
No 275
>PHA02713 hypothetical protein; Provisional
Probab=87.25 E-value=21 Score=31.91 Aligned_cols=120 Identities=11% Similarity=0.119 Sum_probs=55.7
Q ss_pred cEEEEcc-CCceeEecccCC-ccccceEEccCCCEEEEEeCC-------CcEEEEe-cCC-cEEEEeccCCCcccCCccE
Q 026118 31 WIKRMHP-NGTWEDWHQVGS-QSLLGLTTTKENNVIIVCDSQ-------QGLLKVS-EEG-VTVLVSQFNGSQLRFANDV 99 (243)
Q Consensus 31 ~i~~~~~-~g~~~~~~~~~~-~~~~~i~~~~~g~l~~v~~~~-------~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l 99 (243)
.+.++|+ .+++......+. ....+.+. -++++ |+.... ..++++| .+. ...+..-+. + ..-.++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~I-YviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~--~-R~~~~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEI-IIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK--N-RCRFSL 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEE-EEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc--h-hhceeE
Confidence 3567774 455554432211 11113333 35566 777542 1267888 444 333221111 1 111122
Q ss_pred EEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc--cccceEEEcCCCCEEEEEE
Q 026118 100 IEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--YFANGVALSEDERFLVVCE 170 (243)
Q Consensus 100 ~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~--~~~~gi~~~~dg~~l~v~~ 170 (243)
+.-+|.+|+..... .......+.+||+.+.++..+..-. ....+++. -+|+ ||+..
T Consensus 348 -~~~~g~IYviGG~~------------~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~-~~g~-IYviG 405 (557)
T PHA02713 348 -AVIDDTIYAIGGQN------------GTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV-LDQY-IYIIG 405 (557)
T ss_pred -EEECCEEEEECCcC------------CCCCCceEEEEECCCCeEEECCCCCcccccccEEE-ECCE-EEEEe
Confidence 33468899863110 0011246899999988877654211 11122332 2565 88864
No 276
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=87.03 E-value=18 Score=30.90 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=41.4
Q ss_pred CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--ccccccceEEEcCCCCEEEEEEcC
Q 026118 95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFANGVALSEDERFLVVCESW 172 (243)
Q Consensus 95 ~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--~~~~~~~gi~~~~dg~~l~v~~~~ 172 (243)
.++++++-+.-+++.+.+. ...-+||++......+.++. .-....|+|+|+++|+.++++-..
T Consensus 382 Witsla~i~~sdL~asGS~---------------~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 382 WITSLAVIPGSDLLASGSW---------------SGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred ceeeeEecccCceEEecCC---------------CCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccc
Confidence 4455666665556665332 12336888877644444442 224567999999999988877433
Q ss_pred CCeEEEE
Q 026118 173 KFRCVKH 179 (243)
Q Consensus 173 ~~~i~~~ 179 (243)
-.++-|+
T Consensus 447 EhRlGRW 453 (479)
T KOG0299|consen 447 EHRLGRW 453 (479)
T ss_pred cccccee
Confidence 3344333
No 277
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=86.38 E-value=22 Score=31.12 Aligned_cols=154 Identities=8% Similarity=-0.010 Sum_probs=82.7
Q ss_pred ccccceEEccCCCEEEEEeCCCcEEEEec-C-C-cEEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccc
Q 026118 50 QSLLGLTTTKENNVIIVCDSQQGLLKVSE-E-G-VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDL 125 (243)
Q Consensus 50 ~~~~~i~~~~~g~l~~v~~~~~gl~~~~~-~-g-~~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~ 125 (243)
... ++..++|++.+-.+..+..+..+|. + . ...+... ...+-.++..| ...+..+--
T Consensus 303 eVC-gLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H-----~aAVKA~awcP~q~~lLAsGG------------- 363 (484)
T KOG0305|consen 303 EVC-GLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH-----TAAVKALAWCPWQSGLLATGG------------- 363 (484)
T ss_pred eee-eeEECCCCCeeccCCCccceEeccCCCccccEEEecc-----ceeeeEeeeCCCccCceEEcC-------------
Confidence 356 8999999998333333345666663 2 2 2222211 12344566776 444555421
Q ss_pred cccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEc-CCCeEEEEEeecCCCcceEEeccCCCCCCCceE
Q 026118 126 VSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES-WKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVN 204 (243)
Q Consensus 126 ~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 204 (243)
+.....|...|..+++.............|++++..+-+..+.- ..+.|..|+... +.....+. .-..+.--++
T Consensus 364 --Gs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps--~~~~~~l~-gH~~RVl~la 438 (484)
T KOG0305|consen 364 --GSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS--MKLVAELL-GHTSRVLYLA 438 (484)
T ss_pred --CCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc--cceeeeec-CCcceeEEEE
Confidence 12345677788887776655555566788999998876766532 335455554422 11111111 1112233477
Q ss_pred ECCCCC-EEEEEecCCchhhhhhh
Q 026118 205 LARDGS-FWISIIKMDPKGIQALQ 227 (243)
Q Consensus 205 ~d~~G~-lwv~~~~~~~~~~~~~~ 227 (243)
+.++|. +.++..+...+.+....
T Consensus 439 ~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 439 LSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ECCCCCEEEEecccCcEEeccccC
Confidence 888886 44444444444444444
No 278
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=86.37 E-value=9.8 Score=31.81 Aligned_cols=106 Identities=13% Similarity=0.183 Sum_probs=56.8
Q ss_pred ceEEccCCCEEEEEeCCCcEEEEe---cC-CcEEEEeccCCCcccCCccEEEcCC-CcEEEEeCCCCCCccccccccccc
Q 026118 54 GLTTTKENNVIIVCDSQQGLLKVS---EE-GVTVLVSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSG 128 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~~~~gl~~~~---~~-g~~~~~~~~~~~~~~~~~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~ 128 (243)
.....++++++++++..+..+.++ .. +.+.+...... ..+..+.+..+ -..-+++..
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~---~~~~ai~~~~~~~sv~v~dka--------------- 128 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP---KRPTAISFIREDTSVLVADKA--------------- 128 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc---cCcceeeeeeccceEEEEeec---------------
Confidence 455668889878888766644444 22 23332221111 12334444433 345555421
Q ss_pred CCCceEEEEe---CCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEe
Q 026118 129 EPHGVLLKYD---PSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFL 181 (243)
Q Consensus 129 ~~~g~v~~~~---~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~ 181 (243)
|.+|.++ ...+..+++.........+++++|.+.+..++ .+..|.....
T Consensus 129 ---gD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaD-RDEkIRvs~y 180 (390)
T KOG3914|consen 129 ---GDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITAD-RDEKIRVSRY 180 (390)
T ss_pred ---CCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEec-CCceEEEEec
Confidence 2333333 22255555566667778899999999666665 4555655443
No 279
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=86.23 E-value=14 Score=30.21 Aligned_cols=71 Identities=24% Similarity=0.158 Sum_probs=46.6
Q ss_pred CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEE-EeCCCCeeEEee-cc--ccccceEEEcCCCCEEEEEE
Q 026118 95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLK-YDPSTNQTSLVL-DG--LYFANGVALSEDERFLVVCE 170 (243)
Q Consensus 95 ~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~-~~~~~~~~~~~~-~~--~~~~~gi~~~~dg~~l~v~~ 170 (243)
.+.+|+..-+|++..+-+ ..|.|.| +|..+|+..... .+ ......|+|+|+..+|-++
T Consensus 183 ~Iacv~Ln~~Gt~vATaS-----------------tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lavs- 244 (346)
T KOG2111|consen 183 DIACVALNLQGTLVATAS-----------------TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVS- 244 (346)
T ss_pred ceeEEEEcCCccEEEEec-----------------cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEE-
Confidence 344566667777766633 3455554 687777654432 22 2345689999999977777
Q ss_pred cCCCeEEEEEeec
Q 026118 171 SWKFRCVKHFLKV 183 (243)
Q Consensus 171 ~~~~~i~~~~~~~ 183 (243)
+..+.|..|.+.+
T Consensus 245 SdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 245 SDKGTLHIFSLRD 257 (346)
T ss_pred cCCCeEEEEEeec
Confidence 4568888888765
No 280
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=86.03 E-value=23 Score=31.10 Aligned_cols=131 Identities=9% Similarity=0.041 Sum_probs=71.1
Q ss_pred cEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCC---CcEEEEecCCcEEEEeccCCCcccCCccEEEcCCCcE
Q 026118 31 WIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSL 107 (243)
Q Consensus 31 ~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~---~gl~~~~~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l 107 (243)
.+|.++.+|.-..+......|..++..+++|+= |.+-++ ..+-.+|..+ .++..-.++.. +.+.+.|.|++
T Consensus 252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E-F~VvyGfMPAkvtifnlr~-~~v~df~egpR----N~~~fnp~g~i 325 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE-FAVVYGFMPAKVTIFNLRG-KPVFDFPEGPR----NTAFFNPHGNI 325 (566)
T ss_pred eEEEEEecCceEEEecCCCCCceEEEECCCCCE-EEEEEecccceEEEEcCCC-CEeEeCCCCCc----cceEECCCCCE
Confidence 467776555444444433445547788888876 443332 3466666444 22222233322 46688999986
Q ss_pred EEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-ccccceEEEcCCCCEEEEEEcC-----CCeEEEEEe
Q 026118 108 YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDERFLVVCESW-----KFRCVKHFL 181 (243)
Q Consensus 108 ~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~-----~~~i~~~~~ 181 (243)
.+-- +|| ...|.+-.+|..+.+ .+..- -....=..|+|||.+++++.+. ++++-.|++
T Consensus 326 i~lA---GFG-----------NL~G~mEvwDv~n~K--~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 326 ILLA---GFG-----------NLPGDMEVWDVPNRK--LIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred EEEe---ecC-----------CCCCceEEEeccchh--hccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 5431 121 244667777776422 12110 1122336889999999888664 355555555
Q ss_pred ec
Q 026118 182 KV 183 (243)
Q Consensus 182 ~~ 183 (243)
++
T Consensus 390 tG 391 (566)
T KOG2315|consen 390 TG 391 (566)
T ss_pred cC
Confidence 54
No 281
>KOG4328 consensus WD40 protein [Function unknown]
Probab=85.87 E-value=21 Score=30.56 Aligned_cols=30 Identities=7% Similarity=-0.168 Sum_probs=22.5
Q ss_pred cccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118 152 YFANGVALSEDERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 152 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 182 (243)
...+...|+|.+.. .+++..++.|..||..
T Consensus 370 rsV~sAyFSPs~gt-l~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 370 RSVNSAYFSPSGGT-LLTTCQDNEIRVFDSS 399 (498)
T ss_pred ceeeeeEEcCCCCc-eEeeccCCceEEeecc
Confidence 34578899998886 4555677899999863
No 282
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=85.69 E-value=16 Score=29.00 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=45.8
Q ss_pred eEEEEeCCCCeeEEeecc-------ccccceEEEcCC---CC-EEEEEEcCCCeEEEEEeecC---CCcceEEeccCCCC
Q 026118 133 VLLKYDPSTNQTSLVLDG-------LYFANGVALSED---ER-FLVVCESWKFRCVKHFLKVS---GRTDREIFIDNLPG 198 (243)
Q Consensus 133 ~v~~~~~~~~~~~~~~~~-------~~~~~gi~~~~d---g~-~l~v~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~ 198 (243)
.+|.+||+.+.++.+... ...+.|+++..+ |. +++|. ...+.+..|.+-.. ..+...+.--..+.
T Consensus 127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~-~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~t 205 (364)
T COG4247 127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVN-RRQGDIAQYKLIDQGNGKVGTKLVRQFKIPT 205 (364)
T ss_pred EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEe-cCCCceeEEEEEecCCceEcceeeEeeecCC
Confidence 578999998777665433 344667777553 44 33333 34466777766432 22221111001223
Q ss_pred CCCceEE-CCCCCEEEEEec
Q 026118 199 GPDNVNL-ARDGSFWISIIK 217 (243)
Q Consensus 199 ~~~~i~~-d~~G~lwv~~~~ 217 (243)
.-.|+.. |.-|.|||+.-.
T Consensus 206 QTEG~VaDdEtG~LYIaeEd 225 (364)
T COG4247 206 QTEGMVADDETGFLYIAEED 225 (364)
T ss_pred cccceeeccccceEEEeecc
Confidence 3456655 466899998644
No 283
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=85.64 E-value=16 Score=28.82 Aligned_cols=72 Identities=13% Similarity=0.100 Sum_probs=48.4
Q ss_pred cccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-ccccceEEE-cCCCCEEEE
Q 026118 92 QLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVAL-SEDERFLVV 168 (243)
Q Consensus 92 ~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-~~~~~gi~~-~~dg~~l~v 168 (243)
+...+|.|..|| ++.++++. ..+.+|.+|.++|++++...+ ..+...++- +..++ ++-
T Consensus 113 evPeINam~ldP~enSi~~Ag------------------GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-ils 173 (325)
T KOG0649|consen 113 EVPEINAMWLDPSENSILFAG------------------GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-ILS 173 (325)
T ss_pred cCCccceeEeccCCCcEEEec------------------CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc-eee
Confidence 345678899997 57788872 346899999999999887543 334455554 44555 443
Q ss_pred EEcCCCeEEEEEeec
Q 026118 169 CESWKFRCVKHFLKV 183 (243)
Q Consensus 169 ~~~~~~~i~~~~~~~ 183 (243)
. ..++.+..+|..+
T Consensus 174 G-~EDGtvRvWd~kt 187 (325)
T KOG0649|consen 174 G-AEDGTVRVWDTKT 187 (325)
T ss_pred c-CCCccEEEEeccc
Confidence 3 4567777777654
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=85.54 E-value=17 Score=29.11 Aligned_cols=144 Identities=10% Similarity=0.112 Sum_probs=72.9
Q ss_pred ceEEccCCCEEEEEeCCCcEEEEe--cCCcEEE-Ee-ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccC
Q 026118 54 GLTTTKENNVIIVCDSQQGLLKVS--EEGVTVL-VS-QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGE 129 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~~~~gl~~~~--~~g~~~~-~~-~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~ 129 (243)
-++...+|++|.+. .+..+.+. .+.+..+ .. .....+...=.-++.+||+.+.+-..
T Consensus 2 ~~~~~~~Gk~lAi~--qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~----------------- 62 (282)
T PF15492_consen 2 HLALSSDGKLLAIL--QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAE----------------- 62 (282)
T ss_pred ceeecCCCcEEEEE--eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEc-----------------
Confidence 35677899984443 34455554 4443222 22 22222333345689999998776432
Q ss_pred CCceEEEEeCCCCeeEEeeccc-------cccceEEEcCCC---C---EEEEEEcCCCeEEEEEeecCC---CcceEEec
Q 026118 130 PHGVLLKYDPSTNQTSLVLDGL-------YFANGVALSEDE---R---FLVVCESWKFRCVKHFLKVSG---RTDREIFI 193 (243)
Q Consensus 130 ~~g~v~~~~~~~~~~~~~~~~~-------~~~~gi~~~~dg---~---~l~v~~~~~~~i~~~~~~~~~---~~~~~~~~ 193 (243)
..|.|..+|..+.++..+.... ....||.|-+-. + -|+|.+ ..+.+..|-+..++ ......|
T Consensus 63 S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~-Y~G~L~Sy~vs~gt~q~y~e~hsf- 140 (282)
T PF15492_consen 63 STGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN-YRGQLRSYLVSVGTNQGYQENHSF- 140 (282)
T ss_pred CCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEe-ccceeeeEEEEcccCCcceeeEEE-
Confidence 2467888888755544432211 223456554322 1 244443 45667666664321 1111121
Q ss_pred cCCCCCCCc---eEECCCCC-EEEEEecC
Q 026118 194 DNLPGGPDN---VNLARDGS-FWISIIKM 218 (243)
Q Consensus 194 ~~~~~~~~~---i~~d~~G~-lwv~~~~~ 218 (243)
.....+|.| ++.++..+ |+|+..+.
T Consensus 141 sf~~~yp~Gi~~~vy~p~h~LLlVgG~~~ 169 (282)
T PF15492_consen 141 SFSSHYPHGINSAVYHPKHRLLLVGGCEQ 169 (282)
T ss_pred EecccCCCceeEEEEcCCCCEEEEeccCC
Confidence 122233444 67788877 56665543
No 285
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=85.37 E-value=19 Score=29.43 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=27.7
Q ss_pred CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee
Q 026118 95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL 148 (243)
Q Consensus 95 ~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~ 148 (243)
.+|+|..+++|++.++- +....|+++++.+|++....
T Consensus 145 HiNsV~~~~~G~yLiS~-----------------R~~~~i~~I~~~tG~I~W~l 181 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISS-----------------RNTSTIYKIDPSTGKIIWRL 181 (299)
T ss_pred EeeeeeecCCccEEEEe-----------------cccCEEEEEECCCCcEEEEe
Confidence 56788888899988873 23457999998888776554
No 286
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=85.37 E-value=15 Score=28.44 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=40.2
Q ss_pred cccEEEcCCCcEEEEe-CCCcEEEEcc-CCc-eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe
Q 026118 12 PEDVSVDGNGVLYTAT-GDGWIKRMHP-NGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (243)
Q Consensus 12 p~~i~~d~~g~l~~~~-~~~~i~~~~~-~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~ 77 (243)
-.++++||.|+|.++. .+.....+|. .++ +..+........ ++.|+|...+|..+.+...|-.-|
T Consensus 234 vaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir-~vrfsp~a~yllt~syd~~ikltd 301 (350)
T KOG0641|consen 234 VAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIR-CVRFSPGAHYLLTCSYDMKIKLTD 301 (350)
T ss_pred eEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCcccee-EEEeCCCceEEEEecccceEEEee
Confidence 3468999999988776 5666666663 333 455544333444 788888777655655544444334
No 287
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=85.26 E-value=7.4 Score=32.15 Aligned_cols=88 Identities=14% Similarity=0.050 Sum_probs=46.7
Q ss_pred eEEEEeCCCCeeEEeeccccccceEEEcC-CCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCE
Q 026118 133 VLLKYDPSTNQTSLVLDGLYFANGVALSE-DERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSF 211 (243)
Q Consensus 133 ~v~~~~~~~~~~~~~~~~~~~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l 211 (243)
.|-..+..+++..+...+ +-.|||.-. .++ +.|+.+.++.|..++..-+.. -.+..+-..+...+.+|.. +|
T Consensus 341 TikvW~~st~efvRtl~g--HkRGIAClQYr~r-lvVSGSSDntIRlwdi~~G~c---LRvLeGHEeLvRciRFd~k-rI 413 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTLNG--HKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGAC---LRVLEGHEELVRCIRFDNK-RI 413 (499)
T ss_pred eEEEEeccceeeehhhhc--ccccceehhccCe-EEEecCCCceEEEEeccccHH---HHHHhchHHhhhheeecCc-ee
Confidence 354556666776655432 334665543 455 889988899999999874321 1111111123445556533 34
Q ss_pred EEEEecCCchhhhhhh
Q 026118 212 WISIIKMDPKGIQALQ 227 (243)
Q Consensus 212 wv~~~~~~~~~~~~~~ 227 (243)
.-|...|..+++++..
T Consensus 414 VSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 414 VSGAYDGKIKVWDLQA 429 (499)
T ss_pred eeccccceEEEEeccc
Confidence 4444444444444433
No 288
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=84.73 E-value=4 Score=21.23 Aligned_cols=29 Identities=24% Similarity=0.021 Sum_probs=20.9
Q ss_pred ccccceEEEcCCCCEEEEEEcCCCeEEEEE
Q 026118 151 LYFANGVALSEDERFLVVCESWKFRCVKHF 180 (243)
Q Consensus 151 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~ 180 (243)
....+.|+++|+++.+. +...++.|..||
T Consensus 11 ~~~i~~i~~~~~~~~~~-s~~~D~~i~vwd 39 (39)
T PF00400_consen 11 SSSINSIAWSPDGNFLA-SGSSDGTIRVWD 39 (39)
T ss_dssp SSSEEEEEEETTSSEEE-EEETTSEEEEEE
T ss_pred CCcEEEEEEecccccce-eeCCCCEEEEEC
Confidence 45567899999998444 445678887765
No 289
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=84.63 E-value=6.8 Score=32.45 Aligned_cols=144 Identities=13% Similarity=0.080 Sum_probs=69.4
Q ss_pred cCCCcEE-EEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEecCC-cEEEEeccCCCccc
Q 026118 18 DGNGVLY-TATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVLVSQFNGSQLR 94 (243)
Q Consensus 18 d~~g~l~-~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g-~~~~~~~~~~~~~~ 94 (243)
-|+-.+- +++.++.|..+| .+|+.......-......|+++..|+++..+..+-.+..++-+. .+.+.. ......
T Consensus 117 hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks--~~gh~h 194 (406)
T KOG0295|consen 117 HPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKS--LIGHEH 194 (406)
T ss_pred ccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHH--hcCccc
Confidence 3444333 344677888888 56666444332222233789999998733332221233344111 111110 001123
Q ss_pred CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe-eEEeeccccccceEEEcCCCCEEEEEEcCC
Q 026118 95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ-TSLVLDGLYFANGVALSEDERFLVVCESWK 173 (243)
Q Consensus 95 ~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~-~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~ 173 (243)
.+.++++-|-|....+.+. ...|...+-+++- +..+.....+..-+.++.||. |..+-..+
T Consensus 195 ~vS~V~f~P~gd~ilS~sr-----------------D~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt-i~As~s~d 256 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSR-----------------DNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT-IIASCSND 256 (406)
T ss_pred ceeeEEEEecCCeeeeccc-----------------ccceeEEecccceeEEeccCchHhEEEEEecCCee-EEEecCCC
Confidence 4567777888866666433 1233333333332 222222233445566677776 66655555
Q ss_pred CeEEEEEe
Q 026118 174 FRCVKHFL 181 (243)
Q Consensus 174 ~~i~~~~~ 181 (243)
+.|..+-.
T Consensus 257 qtl~vW~~ 264 (406)
T KOG0295|consen 257 QTLRVWVV 264 (406)
T ss_pred ceEEEEEe
Confidence 65555544
No 290
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=84.43 E-value=2 Score=21.66 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=18.9
Q ss_pred cCCCcEEEEeCCCcEEEEcc-CCcee
Q 026118 18 DGNGVLYTATGDGWIKRMHP-NGTWE 42 (243)
Q Consensus 18 d~~g~l~~~~~~~~i~~~~~-~g~~~ 42 (243)
..+|.+|+++.++.++.+|. +|+..
T Consensus 4 ~~~~~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 4 LSDGTVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred EECCEEEEEcCCCEEEEEEcccCcEE
Confidence 34678999988899999984 66543
No 291
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=83.86 E-value=22 Score=29.04 Aligned_cols=150 Identities=9% Similarity=0.081 Sum_probs=78.6
Q ss_pred cccEEEcCCCc-EEEEeCCCcEEEEccC--CceeEeccc---CCccccceEEccCCCEEEEEeCCCc-EEEEe-cCC--c
Q 026118 12 PEDVSVDGNGV-LYTATGDGWIKRMHPN--GTWEDWHQV---GSQSLLGLTTTKENNVIIVCDSQQG-LLKVS-EEG--V 81 (243)
Q Consensus 12 p~~i~~d~~g~-l~~~~~~~~i~~~~~~--g~~~~~~~~---~~~~~~~i~~~~~g~l~~v~~~~~g-l~~~~-~~g--~ 81 (243)
-.+|.+-|.|. |.+++...-+..+|-+ ..+...... .+... .+.+++.|++ |++....| |-.+| -.+ +
T Consensus 219 vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~-~V~Ys~t~~l-YvTaSkDG~IklwDGVS~rCv 296 (430)
T KOG0640|consen 219 VRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT-QVRYSSTGSL-YVTASKDGAIKLWDGVSNRCV 296 (430)
T ss_pred eeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee-EEEecCCccE-EEEeccCCcEEeeccccHHHH
Confidence 45677778774 6677655545555522 112111110 01223 5678899999 99886666 44555 233 4
Q ss_pred EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE-Eeecc-----ccccc
Q 026118 82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS-LVLDG-----LYFAN 155 (243)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~-~~~~~-----~~~~~ 155 (243)
+.+.....+ ..+-+..+..+|++.++. + ....+......+++.. ..... .....
T Consensus 297 ~t~~~AH~g---sevcSa~Ftkn~kyiLsS-G----------------~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rt 356 (430)
T KOG0640|consen 297 RTIGNAHGG---SEVCSAVFTKNGKYILSS-G----------------KDSTVKLWEISTGRMLKEYTGAGTTGRQKHRT 356 (430)
T ss_pred HHHHhhcCC---ceeeeEEEccCCeEEeec-C----------------CcceeeeeeecCCceEEEEecCCcccchhhhh
Confidence 444332222 334455677888877762 1 1112222333333332 22211 12233
Q ss_pred eEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118 156 GVALSEDERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 156 gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
...|+....++...+...+++..+|..+
T Consensus 357 qAvFNhtEdyVl~pDEas~slcsWdaRt 384 (430)
T KOG0640|consen 357 QAVFNHTEDYVLFPDEASNSLCSWDART 384 (430)
T ss_pred hhhhcCccceEEccccccCceeeccccc
Confidence 4566666777777777788888888653
No 292
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=83.73 E-value=8.9 Score=32.31 Aligned_cols=20 Identities=30% Similarity=0.095 Sum_probs=17.3
Q ss_pred cccceEEEcCCCCEEEEEEc
Q 026118 152 YFANGVALSEDERFLVVCES 171 (243)
Q Consensus 152 ~~~~gi~~~~dg~~l~v~~~ 171 (243)
..|+-|.+|-||+.|||+++
T Consensus 389 GGPQMlQLSLDGKRLYVt~S 408 (476)
T KOG0918|consen 389 GGPQMLQLSLDGKRLYVTNS 408 (476)
T ss_pred CCceeEEeccCCcEEEEEch
Confidence 46778999999999999965
No 293
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=83.47 E-value=17 Score=33.13 Aligned_cols=109 Identities=15% Similarity=0.120 Sum_probs=63.5
Q ss_pred ceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCC
Q 026118 54 GLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEP 130 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~ 130 (243)
.|+++|.-++..++-.+..|..|+ ..| .+.+..... . ...+--+..||.| +|++++- .
T Consensus 601 Dm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~-~-eG~lIKv~lDPSg-iY~atSc----------------s 661 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD-H-EGDLIKVILDPSG-IYLATSC----------------S 661 (1080)
T ss_pred EeeeCCCcceEEEEecccceEEEeccccceeeeeccccc-C-CCceEEEEECCCc-cEEEEee----------------c
Confidence 567777766533333345677777 666 333322111 1 0123356778888 4554431 1
Q ss_pred CceEEEEeCCCCeeEE-eeccccccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118 131 HGVLLKYDPSTNQTSL-VLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 131 ~g~v~~~~~~~~~~~~-~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 182 (243)
.-.|..||--+|+.-. .........|+.|.+|=+.| ++-.+++.|+.+.+.
T Consensus 662 dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHl-ISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 662 DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHL-ISVSGDGCIFVWKLP 713 (1080)
T ss_pred CCceEEEEeccchhhhhhcCcchheeeeeecccchhh-eeecCCceEEEEECc
Confidence 2357778877676432 23334557899999998855 455678899988764
No 294
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=83.31 E-value=6.2 Score=25.58 Aligned_cols=46 Identities=11% Similarity=0.018 Sum_probs=29.2
Q ss_pred CcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEe
Q 026118 30 GWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS 77 (243)
Q Consensus 30 ~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~ 77 (243)
+.|..+++ ++.+........|+ ||+++++++.+||+... +.|..+.
T Consensus 36 ~~Vvyyd~-~~~~~va~g~~~aN-GI~~s~~~k~lyVa~~~~~~I~vy~ 82 (86)
T PF01731_consen 36 GNVVYYDG-KEVKVVASGFSFAN-GIAISPDKKYLYVASSLAHSIHVYK 82 (86)
T ss_pred ceEEEEeC-CEeEEeeccCCCCc-eEEEcCCCCEEEEEeccCCeEEEEE
Confidence 44555653 23333333335678 99999999988999865 3455554
No 295
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.29 E-value=41 Score=31.72 Aligned_cols=153 Identities=13% Similarity=0.146 Sum_probs=83.1
Q ss_pred ccCCcccEEEcCCCc-EEEEeCCCcEEEEc-cCCc-eeEecccCCccccceEEccCCCEEEEEeCCC-cEEEEe-cCCcE
Q 026118 8 IVNHPEDVSVDGNGV-LYTATGDGWIKRMH-PNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS-EEGVT 82 (243)
Q Consensus 8 ~~~~p~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~-~~g~~ 82 (243)
.-.+..+|++-|..- +.++-..|.|-.+| .-++ +.+|... ..|..|+.|.+.+-+ ||...+. .|-.++ ... +
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeH-dGpVRgv~FH~~qpl-FVSGGDDykIkVWnYk~r-r 84 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEH-DGPVRGVDFHPTQPL-FVSGGDDYKIKVWNYKTR-R 84 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhcc-CCccceeeecCCCCe-EEecCCccEEEEEecccc-e
Confidence 345677888888653 33344778888887 3343 3333322 335559999999999 8876554 344444 322 1
Q ss_pred EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-ccccceEEEcC
Q 026118 83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSE 161 (243)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-~~~~~gi~~~~ 161 (243)
-+.. .-+ ...++..+.+.+.- =|+-..+ ....|-..+-.+++...+.++ ..+.....|+|
T Consensus 85 clft-L~G-HlDYVRt~~FHhey-PWIlSAS----------------DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp 145 (1202)
T KOG0292|consen 85 CLFT-LLG-HLDYVRTVFFHHEY-PWILSAS----------------DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP 145 (1202)
T ss_pred ehhh-hcc-ccceeEEeeccCCC-ceEEEcc----------------CCCeEEEEeccCCceEEEEecCceEEEeeccCC
Confidence 1111 000 11233333443332 2332111 011333334444444333333 34456678899
Q ss_pred CCCEEEEEEcCCCeEEEEEeec
Q 026118 162 DERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 162 dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
... +.|+.+.+++|.++|+++
T Consensus 146 tED-lIVSaSLDQTVRVWDisG 166 (1202)
T KOG0292|consen 146 TED-LIVSASLDQTVRVWDISG 166 (1202)
T ss_pred ccc-eEEEecccceEEEEeecc
Confidence 777 888888899999999875
No 296
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=83.26 E-value=37 Score=31.17 Aligned_cols=103 Identities=13% Similarity=0.060 Sum_probs=58.8
Q ss_pred cccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc----cccceEEEcCCCCEEE
Q 026118 92 QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL----YFANGVALSEDERFLV 167 (243)
Q Consensus 92 ~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~----~~~~gi~~~~dg~~l~ 167 (243)
.....++|++||.-.+.++.-. .-.|-.|+..+++..+...+. ..+--+..||-|.|+.
T Consensus 595 ~ktTlYDm~Vdp~~k~v~t~cQ-----------------Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~a 657 (1080)
T KOG1408|consen 595 SKTTLYDMAVDPTSKLVVTVCQ-----------------DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLA 657 (1080)
T ss_pred ccceEEEeeeCCCcceEEEEec-----------------ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEE
Confidence 3456789999997665554211 124556777767665554332 3344577788885444
Q ss_pred EEEcCCCeEEEEEeecCC-----CcceEEeccCCCCCCCc---eEECCCCCEEE
Q 026118 168 VCESWKFRCVKHFLKVSG-----RTDREIFIDNLPGGPDN---VNLARDGSFWI 213 (243)
Q Consensus 168 v~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~---i~~d~~G~lwv 213 (243)
.+ ..+..|..||...+. .++.+.+ .+....++. |....||.|+|
T Consensus 658 tS-csdktl~~~Df~sgEcvA~m~GHsE~V-TG~kF~nDCkHlISvsgDgCIFv 709 (1080)
T KOG1408|consen 658 TS-CSDKTLCFVDFVSGECVAQMTGHSEAV-TGVKFLNDCKHLISVSGDGCIFV 709 (1080)
T ss_pred Ee-ecCCceEEEEeccchhhhhhcCcchhe-eeeeecccchhheeecCCceEEE
Confidence 33 567789999986432 2222222 122223333 77778888776
No 297
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=83.25 E-value=12 Score=33.29 Aligned_cols=113 Identities=11% Similarity=0.070 Sum_probs=60.8
Q ss_pred eEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEeccCCCcccCCccEEEcCCC-cEEEEeCCCCCC
Q 026118 42 EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFT 117 (243)
Q Consensus 42 ~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~G-~l~v~~~~~~~~ 117 (243)
..|....+.+. ...|.|....|+|++ ...|..+| ..+ ++.+.. + .-.+..|++++.| +++++..
T Consensus 560 ~PF~kskG~vq-~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~t---g--~kwiS~msihp~GDnli~gs~----- 627 (733)
T KOG0650|consen 560 SPFRKSKGLVQ-RVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLT---G--SKWISSMSIHPNGDNLILGSY----- 627 (733)
T ss_pred CchhhcCCcee-EEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhc---C--CeeeeeeeecCCCCeEEEecC-----
Confidence 34433345566 778888777768887 45677777 333 332221 1 1245578899877 5777642
Q ss_pred cccccccccccCCCceEEEEeCCCC--eeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEE
Q 026118 118 PAEYYLDLVSGEPHGVLLKYDPSTN--QTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHF 180 (243)
Q Consensus 118 ~~~~~~~~~~~~~~g~v~~~~~~~~--~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~ 180 (243)
..+++-+|.+-. -.+.+-........+++++.=. |+.+...++.+.+|.
T Consensus 628 -------------d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 628 -------------DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFH 678 (733)
T ss_pred -------------CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEe
Confidence 357888887732 1111111112234456665444 555544445555543
No 298
>PHA03098 kelch-like protein; Provisional
Probab=83.15 E-value=32 Score=30.42 Aligned_cols=134 Identities=12% Similarity=0.022 Sum_probs=62.6
Q ss_pred cEEEEcc-CCceeEecccC-CccccceEEccCCCEEEEEeCCC------cEEEEe-cCC-cEEEEeccCCCcccCCccEE
Q 026118 31 WIKRMHP-NGTWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQQ------GLLKVS-EEG-VTVLVSQFNGSQLRFANDVI 100 (243)
Q Consensus 31 ~i~~~~~-~g~~~~~~~~~-~~~~~~i~~~~~g~l~~v~~~~~------gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~ 100 (243)
.++++|+ ..++....... .+...+++. -++++ |+..... .+.+++ .++ .......+. + ....++
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~-~~~~l-yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~--~-r~~~~~- 385 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTV-FNNRI-YVIGGIYNSISLNTVESWKPGESKWREEPPLIF--P-RYNPCV- 385 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEE-ECCEE-EEEeCCCCCEecceEEEEcCCCCceeeCCCcCc--C-CccceE-
Confidence 4677773 55565443211 111112322 35666 7665322 266777 444 433221111 1 111222
Q ss_pred EcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc-c-ccceEEEcCCCCEEEEEEcCC-----
Q 026118 101 EASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL-Y-FANGVALSEDERFLVVCESWK----- 173 (243)
Q Consensus 101 ~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~-~-~~~gi~~~~dg~~l~v~~~~~----- 173 (243)
..-+|++|+...... .......+++||+.+.++.....-. . ....++. -+++ +|+..-.+
T Consensus 386 ~~~~~~iYv~GG~~~-----------~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~ 452 (534)
T PHA03098 386 VNVNNLIYVIGGISK-----------NDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGK-IYVIGGISYIDNI 452 (534)
T ss_pred EEECCEEEEECCcCC-----------CCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCE-EEEECCccCCCCC
Confidence 234678888631100 0011246899999988887653211 1 1122332 3454 88864221
Q ss_pred ---CeEEEEEeec
Q 026118 174 ---FRCVKHFLKV 183 (243)
Q Consensus 174 ---~~i~~~~~~~ 183 (243)
..+++||+..
T Consensus 453 ~~~~~v~~yd~~~ 465 (534)
T PHA03098 453 KVYNIVESYNPVT 465 (534)
T ss_pred cccceEEEecCCC
Confidence 2378888764
No 299
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=82.08 E-value=32 Score=30.60 Aligned_cols=106 Identities=8% Similarity=0.019 Sum_probs=51.4
Q ss_pred ceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCC
Q 026118 54 GLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPH 131 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~ 131 (243)
.+.|+.+|--+-|++..+.++.+| .+. ...+.......++.....+..+ ++...++...
T Consensus 233 al~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~-~q~~v~S~Dk------------------ 293 (703)
T KOG2321|consen 233 ALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD-QQNKVVSMDK------------------ 293 (703)
T ss_pred EEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC-CCceEEecch------------------
Confidence 788887775546666556688888 443 2111111111111111111111 1233333211
Q ss_pred ceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEE
Q 026118 132 GVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKH 179 (243)
Q Consensus 132 g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~ 179 (243)
.-+-..|+.+|+.-...+.....+.+++-|++..++++.. +..+..|
T Consensus 294 ~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane-~~~m~~y 340 (703)
T KOG2321|consen 294 RILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANE-SSKMHTY 340 (703)
T ss_pred HHhhhcccccCCceeeccccCCcCceeeecCCceEEEecC-CCcceeE
Confidence 1122356666665554444445677888888885566643 3444444
No 300
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=81.95 E-value=29 Score=29.07 Aligned_cols=150 Identities=16% Similarity=0.156 Sum_probs=93.0
Q ss_pred CCcccEEEcCCCcEEEEe-CCCcEEEEc-cC---CceeEe--------------------c--ccCCccccceEEccCCC
Q 026118 10 NHPEDVSVDGNGVLYTAT-GDGWIKRMH-PN---GTWEDW--------------------H--QVGSQSLLGLTTTKENN 62 (243)
Q Consensus 10 ~~p~~i~~d~~g~l~~~~-~~~~i~~~~-~~---g~~~~~--------------------~--~~~~~~~~~i~~~~~g~ 62 (243)
..-++|.++++|..+++. .+..|-.++ +. ...... . .....+...+.+++.+.
T Consensus 194 ~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v 273 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATV 273 (423)
T ss_pred cceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCc
Confidence 345678889999777654 666666665 11 000000 0 00122443566766666
Q ss_pred EEEEEeCCCcEEEEe-cCC--cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeC
Q 026118 63 VIIVCDSQQGLLKVS-EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDP 139 (243)
Q Consensus 63 l~~v~~~~~gl~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~ 139 (243)
+ |.+.+++-|..+| ..| ...+.. . -..+++...+.-++.++.+. ...+-.+||
T Consensus 274 ~-yS~SwDHTIk~WDletg~~~~~~~~---~---ksl~~i~~~~~~~Ll~~gss-----------------dr~irl~DP 329 (423)
T KOG0313|consen 274 I-YSVSWDHTIKVWDLETGGLKSTLTT---N---KSLNCISYSPLSKLLASGSS-----------------DRHIRLWDP 329 (423)
T ss_pred e-EeecccceEEEEEeecccceeeeec---C---cceeEeecccccceeeecCC-----------------CCceeecCC
Confidence 6 8888888888888 555 222221 1 13456677777778877433 123556788
Q ss_pred CCCeeE----EeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118 140 STNQTS----LVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 140 ~~~~~~----~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
.++.-. .+.....+..++-++|...+++++...++.+..+|...
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence 765322 23344557788999999999999999999999998764
No 301
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=81.60 E-value=18 Score=32.25 Aligned_cols=65 Identities=11% Similarity=0.080 Sum_probs=47.9
Q ss_pred ccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEE
Q 026118 149 DGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWI 213 (243)
Q Consensus 149 ~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv 213 (243)
.+.-.|.=|||++..+.+-|+...-+.|..|.+....+.+.+-+--....+|.||++=.|..|.+
T Consensus 336 PGILvPDliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLi 400 (671)
T PF15390_consen 336 PGILVPDLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLI 400 (671)
T ss_pred ccccccceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEE
Confidence 44556788999999998888876678899998876566665544334456899999987776544
No 302
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=81.30 E-value=8.1 Score=33.77 Aligned_cols=70 Identities=21% Similarity=0.118 Sum_probs=42.2
Q ss_pred CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccceEEEcCCCCEEEEEEcCC
Q 026118 95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERFLVVCESWK 173 (243)
Q Consensus 95 ~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~~ 173 (243)
.++.+++.+||....+.+. +|-|-.+|-++.++.-+.. ....--.++|+|||+++.+.. .+
T Consensus 292 ~in~f~FS~DG~~LA~VSq-----------------DGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG-ED 353 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQ-----------------DGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG-ED 353 (636)
T ss_pred cccceeEcCCCceEEEEec-----------------CceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC-Cc
Confidence 5677888888887776543 2344445544444332221 122334589999999776664 45
Q ss_pred CeEEEEEee
Q 026118 174 FRCVKHFLK 182 (243)
Q Consensus 174 ~~i~~~~~~ 182 (243)
.-|.+|...
T Consensus 354 DLVtVwSf~ 362 (636)
T KOG2394|consen 354 DLVTVWSFE 362 (636)
T ss_pred ceEEEEEec
Confidence 667777653
No 303
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=80.42 E-value=21 Score=31.55 Aligned_cols=103 Identities=17% Similarity=0.103 Sum_probs=56.7
Q ss_pred cEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccceEEEcCCCCEEEEEEcC--CC
Q 026118 98 DVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERFLVVCESW--KF 174 (243)
Q Consensus 98 ~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~--~~ 174 (243)
..+.+|.|+-+..-++. +...+-..|.+.....+++.+.. +....|.+.++|.|+++.++.-. ++
T Consensus 450 ~FaWEP~gdkF~vi~g~------------~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g 517 (698)
T KOG2314|consen 450 AFAWEPHGDKFAVISGN------------TVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRG 517 (698)
T ss_pred eeeeccCCCeEEEEEcc------------ccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEeccccc
Confidence 45677888766553220 11223346666644343333211 22567899999999988887543 56
Q ss_pred eEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEE
Q 026118 175 RCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISI 215 (243)
Q Consensus 175 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~ 215 (243)
.+.-||.+- ...+............+..|+.|+..+..
T Consensus 518 ~l~F~D~~~---a~~k~~~~~eh~~at~veWDPtGRYvvT~ 555 (698)
T KOG2314|consen 518 DLEFYDTDY---ADLKDTASPEHFAATEVEWDPTGRYVVTS 555 (698)
T ss_pred ceEEEecch---hhhhhccCccccccccceECCCCCEEEEe
Confidence 677777652 12222221222234557888888765543
No 304
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=80.34 E-value=52 Score=30.85 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=18.7
Q ss_pred CCcEEEEeCCCcEEEEc-cCCcee
Q 026118 20 NGVLYTATGDGWIKRMH-PNGTWE 42 (243)
Q Consensus 20 ~g~l~~~~~~~~i~~~~-~~g~~~ 42 (243)
+++||+++.+++|+.+| .+|+..
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~ 283 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLC 283 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEE
Confidence 45899999899999999 567655
No 305
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=79.88 E-value=26 Score=27.21 Aligned_cols=74 Identities=15% Similarity=0.132 Sum_probs=46.7
Q ss_pred ccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe-eEEeeccccccceEEEcCCCCEEEEEEc
Q 026118 93 LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ-TSLVLDGLYFANGVALSEDERFLVVCES 171 (243)
Q Consensus 93 ~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~-~~~~~~~~~~~~gi~~~~dg~~l~v~~~ 171 (243)
.+.+..+++||.|++.++... ...-..||-.+++ ++++.........+.|+|.-.+|..+ .
T Consensus 231 ssavaav~vdpsgrll~sg~~-----------------dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~-s 292 (350)
T KOG0641|consen 231 SSAVAAVAVDPSGRLLASGHA-----------------DSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTC-S 292 (350)
T ss_pred cceeEEEEECCCcceeeeccC-----------------CCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEe-c
Confidence 345678899999999997321 1122234444343 33444444455678899877766655 5
Q ss_pred CCCeEEEEEeecC
Q 026118 172 WKFRCVKHFLKVS 184 (243)
Q Consensus 172 ~~~~i~~~~~~~~ 184 (243)
.++.|..-|++++
T Consensus 293 yd~~ikltdlqgd 305 (350)
T KOG0641|consen 293 YDMKIKLTDLQGD 305 (350)
T ss_pred ccceEEEeecccc
Confidence 6788888888765
No 306
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=79.64 E-value=58 Score=31.03 Aligned_cols=183 Identities=16% Similarity=0.156 Sum_probs=99.8
Q ss_pred CcccEEEcC-CCcEEEEe-CCCcEEEEccCCceeEe--cccCCccccceEEccCCCEEEEEeCCCcEE-EEecCC-c-EE
Q 026118 11 HPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWEDW--HQVGSQSLLGLTTTKENNVIIVCDSQQGLL-KVSEEG-V-TV 83 (243)
Q Consensus 11 ~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~~~~~--~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~-~~~~~g-~-~~ 83 (243)
.+..+.++. ++.+|..+ ....+.+...++..... ....-.+. +++.|.-++-+|..+...... ..+.++ . ..
T Consensus 438 ~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~-~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~v 516 (877)
T KOG1215|consen 438 NAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPE-GLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKV 516 (877)
T ss_pred cceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccC-cEEEEeccCCceecccCCceeEEEEccCCceeE
Confidence 444455553 55677766 55667666644432222 22123455 788885443227766544333 333344 3 22
Q ss_pred EEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe-eccccccceEEEcC
Q 026118 84 LVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYFANGVALSE 161 (243)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~~~~~gi~~~~ 161 (243)
+... ....+..++++| .|-++.++.+. ...+.+-..+.-....+ ..+...|+|++++-
T Consensus 517 l~~~----~l~~~r~~~v~p~~g~~~wtd~~~----------------~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~ 576 (877)
T KOG1215|consen 517 LVSK----DLDLPRSIAVDPEKGLMFWTDWGQ----------------PPRIERASLDGSERAVLVTNGILWPNGLTIDY 576 (877)
T ss_pred EEec----CCCCccceeeccccCeeEEecCCC----------------CchhhhhcCCCCCceEEEeCCccCCCcceEEe
Confidence 2221 124567889998 57788886541 11455555553333333 33468899999998
Q ss_pred CCCEEEEEEcCCC-eEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecC
Q 026118 162 DERFLVVCESWKF-RCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKM 218 (243)
Q Consensus 162 dg~~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~ 218 (243)
..+.+|+.+.... .+...+.++... +.........|.+++.-.+ ++|-..+..
T Consensus 577 ~~~~~yw~d~~~~~~i~~~~~~g~~r---~~~~~~~~~~p~~~~~~~~-~iyw~d~~~ 630 (877)
T KOG1215|consen 577 ETDRLYWADAKLDYTIESANMDGQNR---RVVDSEDLPHPFGLSVFED-YIYWTDWSN 630 (877)
T ss_pred ecceeEEEcccCCcceeeeecCCCce---EEeccccCCCceEEEEecc-eeEEeeccc
Confidence 7777999988766 677777665321 1222222335666666433 455445443
No 307
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=79.54 E-value=7.2 Score=20.52 Aligned_cols=20 Identities=15% Similarity=0.259 Sum_probs=13.8
Q ss_pred cceEEEcCCCCEEEEEEcCC
Q 026118 154 ANGVALSEDERFLVVCESWK 173 (243)
Q Consensus 154 ~~gi~~~~dg~~l~v~~~~~ 173 (243)
-...+++|||++|+++....
T Consensus 11 ~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp EEEEEE-TTSSEEEEEEECT
T ss_pred ccCEEEecCCCEEEEEecCC
Confidence 34578999999888775443
No 308
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=78.50 E-value=39 Score=28.39 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=59.2
Q ss_pred ccccCCcccEEEcCCCcEEEEeCCCcEEEEc-cCCc-eeEecccCCccccceEEccCCCEEEEEe-CCCcEEEEe-cCC-
Q 026118 6 EGIVNHPEDVSVDGNGVLYTATGDGWIKRMH-PNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCD-SQQGLLKVS-EEG- 80 (243)
Q Consensus 6 ~g~~~~p~~i~~d~~g~l~~~~~~~~i~~~~-~~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~-~~~gl~~~~-~~g- 80 (243)
+|....-.++.+.+.+.+|.+..+..|.++| ..+. ...... +.+..++.+.+.-+| .++. ....+..+| +++
T Consensus 257 ~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~--~ksl~~i~~~~~~~L-l~~gssdr~irl~DPR~~~ 333 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT--NKSLNCISYSPLSKL-LASGSSDRHIRLWDPRTGD 333 (423)
T ss_pred cccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec--CcceeEeecccccce-eeecCCCCceeecCCCCCC
Confidence 4433334557777888999999999999999 4443 333322 345448888888888 4444 334566667 443
Q ss_pred cEEEEeccCCCcccCCccEEEcCCCc-EEEE
Q 026118 81 VTVLVSQFNGSQLRFANDVIEASDGS-LYFT 110 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~ 110 (243)
-.......-+. .+.+.++...|... ++++
T Consensus 334 gs~v~~s~~gH-~nwVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 334 GSVVSQSLIGH-KNWVSSVKWSPTNEFQLVS 363 (423)
T ss_pred CceeEEeeecc-hhhhhheecCCCCceEEEE
Confidence 22222222222 24666777777553 5554
No 309
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=78.44 E-value=31 Score=29.10 Aligned_cols=108 Identities=9% Similarity=-0.026 Sum_probs=57.3
Q ss_pred ceEEccCCCEEEEEeCC-CcEEEEe-cCC-c----EEEEeccCCCcc-cCCccEEEcCCCcEEEEeCCCCCCcccccccc
Q 026118 54 GLTTTKENNVIIVCDSQ-QGLLKVS-EEG-V----TVLVSQFNGSQL-RFANDVIEASDGSLYFTVSSTKFTPAEYYLDL 125 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~~~-~gl~~~~-~~g-~----~~~~~~~~~~~~-~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~ 125 (243)
.|.|+.+|++ .+.... -.+..++ ..- + +++. ..+.++ +.+.+++++...+..++.
T Consensus 61 AlqFS~N~~~-L~SGGDD~~~~~W~~de~~~~k~~KPI~--~~~~~H~SNIF~L~F~~~N~~~~SG-------------- 123 (609)
T KOG4227|consen 61 ALQFSHNDRF-LASGGDDMHGRVWNVDELMVRKTPKPIG--VMEHPHRSNIFSLEFDLENRFLYSG-------------- 123 (609)
T ss_pred eeeeccCCeE-EeecCCcceeeeechHHHHhhcCCCCce--eccCccccceEEEEEccCCeeEecC--------------
Confidence 6788888765 333322 2344444 221 1 2222 122233 567899998876655541
Q ss_pred cccCCCceEEEEeCCCCeeEEeecc---ccccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118 126 VSGEPHGVLLKYDPSTNQTSLVLDG---LYFANGVALSEDERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 126 ~~~~~~g~v~~~~~~~~~~~~~~~~---~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 182 (243)
...+.|.+-|-++.+..-+... .....+|..+|-.+ +++..+..+.|..+|..
T Consensus 124 ---~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~R 179 (609)
T KOG4227|consen 124 ---ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNR 179 (609)
T ss_pred ---CCcceeEeeecccceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEecc
Confidence 1234566666665544333221 22456777778766 44444456677777764
No 310
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=77.76 E-value=3.2 Score=22.22 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=16.4
Q ss_pred cEEEcCCCcEEEEeCCCcEEEEcc
Q 026118 14 DVSVDGNGVLYTATGDGWIKRMHP 37 (243)
Q Consensus 14 ~i~~d~~g~l~~~~~~~~i~~~~~ 37 (243)
+++++ +|.||+++.++.++.+|.
T Consensus 16 ~~~v~-~g~vyv~~~dg~l~ald~ 38 (40)
T PF13570_consen 16 SPAVA-GGRVYVGTGDGNLYALDA 38 (40)
T ss_dssp --EEC-TSEEEEE-TTSEEEEEET
T ss_pred CCEEE-CCEEEEEcCCCEEEEEeC
Confidence 34454 679999999999999984
No 311
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=77.43 E-value=34 Score=27.10 Aligned_cols=92 Identities=15% Similarity=0.111 Sum_probs=51.2
Q ss_pred CcccEEEcCCCcEE--EE--eCCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCCcEE-EE-e-cCC-cE
Q 026118 11 HPEDVSVDGNGVLY--TA--TGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLL-KV-S-EEG-VT 82 (243)
Q Consensus 11 ~p~~i~~d~~g~l~--~~--~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~-~~-~-~~g-~~ 82 (243)
.+.++++.++|..+ +. .....++....++....... +.......++++|.+ |++....... .+ + .++ ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g~~-W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDGWV-WTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCCCE-EEEEcCCCceEEEEecCCCcce
Confidence 57788898888543 33 23445666655555544332 222326778899888 8887554332 22 2 344 33
Q ss_pred EEEeccCCCcccCCccEEEcCCCc
Q 026118 83 VLVSQFNGSQLRFANDVIEASDGS 106 (243)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~d~~G~ 106 (243)
.......... ..+..+.+++||.
T Consensus 102 ~~~v~~~~~~-~~I~~l~vSpDG~ 124 (253)
T PF10647_consen 102 PVEVDWPGLR-GRITALRVSPDGT 124 (253)
T ss_pred eEEecccccC-CceEEEEECCCCc
Confidence 3222121111 1567889999996
No 312
>PHA02790 Kelch-like protein; Provisional
Probab=77.12 E-value=50 Score=28.93 Aligned_cols=136 Identities=13% Similarity=0.030 Sum_probs=65.6
Q ss_pred CCCcEEEEeC---CCcEEEEcc-CCceeEecccC-CccccceEEccCCCEEEEEeCCC----cEEEEe-cCC-cEEEEec
Q 026118 19 GNGVLYTATG---DGWIKRMHP-NGTWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQQ----GLLKVS-EEG-VTVLVSQ 87 (243)
Q Consensus 19 ~~g~l~~~~~---~~~i~~~~~-~g~~~~~~~~~-~~~~~~i~~~~~g~l~~v~~~~~----gl~~~~-~~g-~~~~~~~ 87 (243)
-+|.||+... ...+.++++ .+++....... .+.. ..+..-+|++ |+..... .+.++| .++ .......
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~-~~~~~~~g~I-YviGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN-PAVASINNVI-YVIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc-cEEEEECCEE-EEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 3667776542 134566663 44454433211 1111 1122245777 8765322 256677 333 3332211
Q ss_pred cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--ccccceEEEcCCCCE
Q 026118 88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGVALSEDERF 165 (243)
Q Consensus 88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~~gi~~~~dg~~ 165 (243)
..+... .+ ++.-+|.||+.. |.+.+||+++.+++.+..- .....+++.- +|+
T Consensus 395 --~~~r~~-~~-~~~~~~~IYv~G--------------------G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~-~~~- 448 (480)
T PHA02790 395 --YYPHYK-SC-ALVFGRRLFLVG--------------------RNAEFYCESSNTWTLIDDPIYPRDNPELIIV-DNK- 448 (480)
T ss_pred --CCcccc-ce-EEEECCEEEEEC--------------------CceEEecCCCCcEeEcCCCCCCccccEEEEE-CCE-
Confidence 111111 12 233478899871 3467899998888765421 1122344443 555
Q ss_pred EEEEEcCC-----CeEEEEEee
Q 026118 166 LVVCESWK-----FRCVKHFLK 182 (243)
Q Consensus 166 l~v~~~~~-----~~i~~~~~~ 182 (243)
||+..-.+ ..+.+||+.
T Consensus 449 IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 449 LLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred EEEECCcCCCcccceEEEEECC
Confidence 88874321 345566654
No 313
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=76.97 E-value=16 Score=32.25 Aligned_cols=66 Identities=11% Similarity=-0.038 Sum_probs=47.1
Q ss_pred CcccEEEcCCC-cEEEEeCCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe
Q 026118 11 HPEDVSVDGNG-VLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (243)
Q Consensus 11 ~p~~i~~d~~g-~l~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~ 77 (243)
.+.+.+..++. .+.+|..||.|..+|.+..++......-.|. -++-.|+|.++.|++..+-+-.||
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~-~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPT-LIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccce-EEEEcCCCcEEEEEcCCceEEEEE
Confidence 56667777755 5778889999999996655555544334566 888999999866666545577777
No 314
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=76.89 E-value=44 Score=30.13 Aligned_cols=164 Identities=15% Similarity=0.119 Sum_probs=78.0
Q ss_pred cEEEEcc-CCceeEecccC-CccccceEEccCCCEEEEEeCCC-c------EEEEe-cCC-cEEEEeccCCCcccCCccE
Q 026118 31 WIKRMHP-NGTWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQQ-G------LLKVS-EEG-VTVLVSQFNGSQLRFANDV 99 (243)
Q Consensus 31 ~i~~~~~-~g~~~~~~~~~-~~~~~~i~~~~~g~l~~v~~~~~-g------l~~~~-~~g-~~~~~~~~~~~~~~~~~~l 99 (243)
.+..+|+ .+++....... .+...++++ -+|.+ |++.+.. | +.+|| ..+ ...+.. ....+.-.++
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~-~~~~l-Yv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~---M~~~R~~~~v 376 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRVGVAV-LNGKL-YVVGGYDSGSDRLSSVERYDPRTNQWTPVAP---MNTKRSDFGV 376 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccccEEE-ECCEE-EEEccccCCCcccceEEEecCCCCceeccCC---ccCcccccee
Confidence 3456663 44455443211 111215554 34456 8877544 3 66777 333 333221 1111222233
Q ss_pred EEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccc--cceEEEcCCCCEEEEEEcC-----
Q 026118 100 IEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF--ANGVALSEDERFLVVCESW----- 172 (243)
Q Consensus 100 ~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~--~~gi~~~~dg~~l~v~~~~----- 172 (243)
++ -+|.||+.--.. .......+-+|||.+.++..++.-... ..+.+. -+|+ ||+..-.
T Consensus 377 ~~-l~g~iYavGG~d------------g~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~-~~g~-iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 377 AV-LDGKLYAVGGFD------------GEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV-LGGK-LYIIGGGDGSSN 441 (571)
T ss_pred EE-ECCEEEEEeccc------------cccccccEEEecCCCCcccccCCCCcceeeeEEEE-ECCE-EEEEcCcCCCcc
Confidence 32 368888863210 011234689999998888776532221 223332 3565 9987531
Q ss_pred -CCeEEEEEeecCCCcceEEeccCCC-CCCCceEECCCCCEEEEEecC
Q 026118 173 -KFRCVKHFLKVSGRTDREIFIDNLP-GGPDNVNLARDGSFWISIIKM 218 (243)
Q Consensus 173 -~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~lwv~~~~~ 218 (243)
-+++.+||+..+ .++..++-.. ..-.+++. -+|.||+.....
T Consensus 442 ~l~sve~YDP~t~---~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~ 485 (571)
T KOG4441|consen 442 CLNSVECYDPETN---TWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFD 485 (571)
T ss_pred ccceEEEEcCCCC---ceeecCCcccccccceEEE-ECCEEEEECCcc
Confidence 156788887653 2333322111 11223443 356677765433
No 315
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=76.60 E-value=4.6 Score=21.39 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=17.4
Q ss_pred CcEEEEeCCCcEEEEc-cCCceeE
Q 026118 21 GVLYTATGDGWIKRMH-PNGTWED 43 (243)
Q Consensus 21 g~l~~~~~~~~i~~~~-~~g~~~~ 43 (243)
|.+|+++.++.|+.+| .+|+...
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W 24 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLW 24 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEE
Confidence 4688888888899998 5676553
No 316
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.34 E-value=46 Score=28.12 Aligned_cols=137 Identities=17% Similarity=0.241 Sum_probs=68.1
Q ss_pred CcccEEEcCCCcEEEEeCCCcEEEEc-cCCc-eeEec-ccCCccccceEEccCC--CEEEEEeCC---CcEEEEe-c--C
Q 026118 11 HPEDVSVDGNGVLYTATGDGWIKRMH-PNGT-WEDWH-QVGSQSLLGLTTTKEN--NVIIVCDSQ---QGLLKVS-E--E 79 (243)
Q Consensus 11 ~p~~i~~d~~g~l~~~~~~~~i~~~~-~~g~-~~~~~-~~~~~~~~~i~~~~~g--~l~~v~~~~---~gl~~~~-~--~ 79 (243)
.-..|.+.+||.+.++........++ .+|. +.... .........+.|..++ ..+++++.. .++...+ . .
T Consensus 188 eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~ 267 (398)
T KOG0771|consen 188 EVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWS 267 (398)
T ss_pred ccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeec
Confidence 45678888888655554333555565 3442 11111 0001111134454333 222555422 2333333 1 1
Q ss_pred C--cEEEEeccCCCcccCCccEEEcCCCcEEE-EeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--cccccc
Q 026118 80 G--VTVLVSQFNGSQLRFANDVIEASDGSLYF-TVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFA 154 (243)
Q Consensus 80 g--~~~~~~~~~~~~~~~~~~l~~d~~G~l~v-~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--~~~~~~ 154 (243)
+ +...... -.....+.+|+++.+|++.. ++ .+|.|..|+..+-+.-.+. ......
T Consensus 268 ~~~~l~~~~~--~~~~~siSsl~VS~dGkf~AlGT------------------~dGsVai~~~~~lq~~~~vk~aH~~~V 327 (398)
T KOG0771|consen 268 GSNFLRLRKK--IKRFKSISSLAVSDDGKFLALGT------------------MDGSVAIYDAKSLQRLQYVKEAHLGFV 327 (398)
T ss_pred cccccchhhh--hhccCcceeEEEcCCCcEEEEec------------------cCCcEEEEEeceeeeeEeehhhheeee
Confidence 1 1111111 12245778999999998654 43 3467888887533222221 123467
Q ss_pred ceEEEcCCCCEEE
Q 026118 155 NGVALSEDERFLV 167 (243)
Q Consensus 155 ~gi~~~~dg~~l~ 167 (243)
.+++|+||.+++-
T Consensus 328 T~ltF~Pdsr~~~ 340 (398)
T KOG0771|consen 328 TGLTFSPDSRYLA 340 (398)
T ss_pred eeEEEcCCcCccc
Confidence 8999999988554
No 317
>PRK10115 protease 2; Provisional
Probab=75.16 E-value=52 Score=30.39 Aligned_cols=74 Identities=7% Similarity=0.035 Sum_probs=43.7
Q ss_pred CCccEEEcCCCcEE-EEeCCCCCCcccccccccccCCCceEEEEeCCCCee--EEeeccccccceEEEcCCCCEEEEEEc
Q 026118 95 FANDVIEASDGSLY-FTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT--SLVLDGLYFANGVALSEDERFLVVCES 171 (243)
Q Consensus 95 ~~~~l~~d~~G~l~-v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~--~~~~~~~~~~~gi~~~~dg~~l~v~~~ 171 (243)
...++.++|||++. ++.+. .+...-.|+.+|..+|+. ..+. . ...++++.+|++.+|++..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~-------------~G~E~~~l~v~d~~tg~~l~~~i~-~--~~~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDF-------------LSRRQYGIRFRNLETGNWYPELLD-N--VEPSFVWANDSWTFYYVRK 191 (686)
T ss_pred EEeEEEECCCCCEEEEEecC-------------CCcEEEEEEEEECCCCCCCCcccc-C--cceEEEEeeCCCEEEEEEe
Confidence 34456778888733 33211 112334688899987762 2221 1 1245899999998877643
Q ss_pred C-----CCeEEEEEeecC
Q 026118 172 W-----KFRCVKHFLKVS 184 (243)
Q Consensus 172 ~-----~~~i~~~~~~~~ 184 (243)
. ...|+++++.++
T Consensus 192 ~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred cCCCCCCCEEEEEECCCC
Confidence 2 246888777643
No 318
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=74.86 E-value=52 Score=27.96 Aligned_cols=189 Identities=12% Similarity=0.060 Sum_probs=87.6
Q ss_pred cEEEcCCCcEE-EE-eCCC----cEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCC-----------cEEE
Q 026118 14 DVSVDGNGVLY-TA-TGDG----WIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-----------GLLK 75 (243)
Q Consensus 14 ~i~~d~~g~l~-~~-~~~~----~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~-----------gl~~ 75 (243)
.+.+.++|+.. ++ +.+| .|+.+| ..|+...-........ ++...++++.+|...... .|++
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~-~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFS-SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESE-EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccc-eEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 34566777533 33 2222 356666 4554432211111112 377888877644444222 2555
Q ss_pred Ee-cCC---cEEEEeccCCCcccC-CccEEEcCCCcEEEEeCCCCCCcccccccccccCCC-ceEEEEeCCCC-----ee
Q 026118 76 VS-EEG---VTVLVSQFNGSQLRF-ANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPH-GVLLKYDPSTN-----QT 144 (243)
Q Consensus 76 ~~-~~g---~~~~~~~~~~~~~~~-~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~-g~v~~~~~~~~-----~~ 144 (243)
.. .+. ...+...... .. ..++..++||+..+.... .... ..+|.++...+ .+
T Consensus 207 ~~~gt~~~~d~lvfe~~~~---~~~~~~~~~s~d~~~l~i~~~--------------~~~~~s~v~~~d~~~~~~~~~~~ 269 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDE---PFWFVSVSRSKDGRYLFISSS--------------SGTSESEVYLLDLDDGGSPDAKP 269 (414)
T ss_dssp EETTS-GGG-EEEEC-TTC---TTSEEEEEE-TTSSEEEEEEE--------------SSSSEEEEEEEECCCTTTSS-SE
T ss_pred EECCCChHhCeeEEeecCC---CcEEEEEEecCcccEEEEEEE--------------ccccCCeEEEEeccccCCCcCCc
Confidence 55 333 1233322211 12 336677888885554321 1122 57899998864 55
Q ss_pred EEeeccccccceEEEcCCCCEEEEEEc---CCCeEEEEEeecCCCcceE-EeccCCC-CCCCceEECCCCCEEEEEecCC
Q 026118 145 SLVLDGLYFANGVALSEDERFLVVCES---WKFRCVKHFLKVSGRTDRE-IFIDNLP-GGPDNVNLARDGSFWISIIKMD 219 (243)
Q Consensus 145 ~~~~~~~~~~~gi~~~~dg~~l~v~~~---~~~~i~~~~~~~~~~~~~~-~~~~~~~-~~~~~i~~d~~G~lwv~~~~~~ 219 (243)
+.+..........+-+. +..+|+... .+..|++++++........ .+..... ....++....+ .|.+....+.
T Consensus 270 ~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-~Lvl~~~~~~ 347 (414)
T PF02897_consen 270 KLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD-YLVLSYRENG 347 (414)
T ss_dssp EEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT-EEEEEEEETT
T ss_pred EEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC-EEEEEEEECC
Confidence 55554332222222223 444776432 3468888887765433333 4433222 13445555433 4666666655
Q ss_pred chh
Q 026118 220 PKG 222 (243)
Q Consensus 220 ~~~ 222 (243)
.+.
T Consensus 348 ~~~ 350 (414)
T PF02897_consen 348 SSR 350 (414)
T ss_dssp EEE
T ss_pred ccE
Confidence 433
No 319
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=74.58 E-value=12 Score=29.76 Aligned_cols=69 Identities=17% Similarity=0.049 Sum_probs=41.7
Q ss_pred cCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-eeccccccceEEEcCCCCEEEEEEcC
Q 026118 94 RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VLDGLYFANGVALSEDERFLVVCESW 172 (243)
Q Consensus 94 ~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-~~~~~~~~~gi~~~~dg~~l~v~~~~ 172 (243)
.+++++.+-+|+.++.+-- | ..+.+||.+.. .+.-. +.......|.++|+|+-. |..+...
T Consensus 252 pGv~gvrIRpD~KIlATAG--------W-------D~RiRVyswrt--l~pLAVLkyHsagvn~vAfspd~~-lmAaask 313 (323)
T KOG0322|consen 252 PGVSGVRIRPDGKILATAG--------W-------DHRIRVYSWRT--LNPLAVLKYHSAGVNAVAFSPDCE-LMAAASK 313 (323)
T ss_pred CCccceEEccCCcEEeecc--------c-------CCcEEEEEecc--CCchhhhhhhhcceeEEEeCCCCc-hhhhccC
Confidence 4567888889999888732 1 13345665543 33222 222335678899999966 5544455
Q ss_pred CCeEEEEE
Q 026118 173 KFRCVKHF 180 (243)
Q Consensus 173 ~~~i~~~~ 180 (243)
+.+|..++
T Consensus 314 D~rISLWk 321 (323)
T KOG0322|consen 314 DARISLWK 321 (323)
T ss_pred CceEEeee
Confidence 66666554
No 320
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=74.27 E-value=71 Score=29.25 Aligned_cols=147 Identities=12% Similarity=-0.013 Sum_probs=73.8
Q ss_pred cEEEcCCCcEE-EEeCCCcEEEEccCCceeEeccc---CCccccceEEccCC-----CEEEEEeCCCcEEEEecCCcEEE
Q 026118 14 DVSVDGNGVLY-TATGDGWIKRMHPNGTWEDWHQV---GSQSLLGLTTTKEN-----NVIIVCDSQQGLLKVSEEGVTVL 84 (243)
Q Consensus 14 ~i~~d~~g~l~-~~~~~~~i~~~~~~g~~~~~~~~---~~~~~~~i~~~~~g-----~l~~v~~~~~gl~~~~~~g~~~~ 84 (243)
+-++..||..+ +|..+|.|..-++.|..+..... .+.|.+++.+.|.. ..+-|.++++-+..+.-+| +.+
T Consensus 137 ~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~I 215 (1081)
T KOG1538|consen 137 CCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQI 215 (1081)
T ss_pred EeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eee
Confidence 44556777654 55577777666666554433222 23455578777542 2336666655444444444 111
Q ss_pred EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCC
Q 026118 85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDER 164 (243)
Q Consensus 85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~ 164 (243)
.....- .=-|.++..=+.|.+.... ...+.+..|..++-.+-.+..-..+.=.++..|+++
T Consensus 216 gk~r~L--~FdP~CisYf~NGEy~LiG-----------------Gsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ 276 (1081)
T KOG1538|consen 216 GKDRAL--NFDPCCISYFTNGEYILLG-----------------GSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQ 276 (1081)
T ss_pred cccccC--CCCchhheeccCCcEEEEc-----------------cCCCceEEEeecCeEEeeccccceeEEEEEEccCCc
Confidence 110000 0124455555677644431 122456566665322222222122334577788888
Q ss_pred EEEEEEcCCCeEEEEEe
Q 026118 165 FLVVCESWKFRCVKHFL 181 (243)
Q Consensus 165 ~l~v~~~~~~~i~~~~~ 181 (243)
+.. ...-++.|..|++
T Consensus 277 ~v~-~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 277 YVV-VGCQDGTIACYNL 292 (1081)
T ss_pred eEE-EEEccCeeehhhh
Confidence 444 4456678887765
No 321
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=73.61 E-value=44 Score=26.53 Aligned_cols=103 Identities=16% Similarity=0.116 Sum_probs=50.3
Q ss_pred cEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-ccc-cceEEEcCCCCEEEEEEcCC--
Q 026118 98 DVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYF-ANGVALSEDERFLVVCESWK-- 173 (243)
Q Consensus 98 ~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-~~~-~~gi~~~~dg~~l~v~~~~~-- 173 (243)
++++|..| ||+.=.. . .....-.|-++|+++-+++..+.. ... -.+-+|=.=|- ||++...+
T Consensus 127 D~AvDE~G-LWvIYat-----~-------~~~g~ivvskld~~tL~v~~tw~T~~~k~~~~naFmvCGv-LY~~~s~~~~ 192 (250)
T PF02191_consen 127 DFAVDENG-LWVIYAT-----E-------DNNGNIVVSKLDPETLSVEQTWNTSYPKRSAGNAFMVCGV-LYATDSYDTR 192 (250)
T ss_pred EEEEcCCC-EEEEEec-----C-------CCCCcEEEEeeCcccCceEEEEEeccCchhhcceeeEeeE-EEEEEECCCC
Confidence 67888666 8875111 0 001123577899987777655422 111 11112222354 88887654
Q ss_pred -CeE-EEEEeecCCCcceEEeccCCCCCCCceEECCCC-CEEEE
Q 026118 174 -FRC-VKHFLKVSGRTDREIFIDNLPGGPDNVNLARDG-SFWIS 214 (243)
Q Consensus 174 -~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G-~lwv~ 214 (243)
..| +.||...+......+......+....|..++.. .||+=
T Consensus 193 ~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 193 DTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAW 236 (250)
T ss_pred CcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEE
Confidence 223 456655433333333332333344556666544 46663
No 322
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=73.21 E-value=65 Score=28.32 Aligned_cols=153 Identities=12% Similarity=0.015 Sum_probs=81.1
Q ss_pred CCcccEEEcCCCcEEEEe-CCCcEEEEccCC--ceeEecccCCccccceEEccCC-CEEEEEeCC-CcEEEE-e-cCCcE
Q 026118 10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPNG--TWEDWHQVGSQSLLGLTTTKEN-NVIIVCDSQ-QGLLKV-S-EEGVT 82 (243)
Q Consensus 10 ~~p~~i~~d~~g~l~~~~-~~~~i~~~~~~g--~~~~~~~~~~~~~~~i~~~~~g-~l~~v~~~~-~gl~~~-~-~~g~~ 82 (243)
..-+++.+.+|+....+. .++.++.+|... ....+.......- .|+++|-. .+|.++... .+.++| | .+|.
T Consensus 302 qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK-A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~- 379 (484)
T KOG0305|consen 302 QEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK-ALAWCPWQSGLLATGGGSADRCIKFWNTNTGA- 379 (484)
T ss_pred ceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeee-EeeeCCCccCceEEcCCCcccEEEEEEcCCCc-
Confidence 345678888888776554 778888888422 1222222222333 67787643 352444321 344444 4 4442
Q ss_pred EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCC
Q 026118 83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED 162 (243)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~d 162 (243)
.+.....+ ..+-.|...+..+=++++.+ |. ...-.||+|..- .....+.......--++++||
T Consensus 380 ~i~~vdtg---sQVcsL~Wsk~~kEi~sthG--~s-----------~n~i~lw~~ps~-~~~~~l~gH~~RVl~la~SPd 442 (484)
T KOG0305|consen 380 RIDSVDTG---SQVCSLIWSKKYKELLSTHG--YS-----------ENQITLWKYPSM-KLVAELLGHTSRVLYLALSPD 442 (484)
T ss_pred EecccccC---CceeeEEEcCCCCEEEEecC--CC-----------CCcEEEEecccc-ceeeeecCCcceeEEEEECCC
Confidence 22221222 35667788887654444332 11 112257777543 222223333344567999999
Q ss_pred CCEEEEEEcCCCeEEEEEee
Q 026118 163 ERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 163 g~~l~v~~~~~~~i~~~~~~ 182 (243)
|.++.++ ..+..|..+++-
T Consensus 443 g~~i~t~-a~DETlrfw~~f 461 (484)
T KOG0305|consen 443 GETIVTG-AADETLRFWNLF 461 (484)
T ss_pred CCEEEEe-cccCcEEecccc
Confidence 9977766 455666666554
No 323
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=72.97 E-value=25 Score=29.67 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=37.7
Q ss_pred CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccceEEEcCCCCEEE
Q 026118 95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERFLV 167 (243)
Q Consensus 95 ~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~ 167 (243)
-+.+++..+++++.++- ...+.++.+|...|.+..... ....++|.+++|-++++-
T Consensus 125 diydL~Ws~d~~~l~s~-----------------s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~ 181 (434)
T KOG1009|consen 125 DIYDLAWSPDSNFLVSG-----------------SVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVA 181 (434)
T ss_pred chhhhhccCCCceeeee-----------------eccceEEEEEeccceeEeeccccccccceeecchhhhhhh
Confidence 45567777887766652 234567778888787766543 356789999998776443
No 324
>PHA03098 kelch-like protein; Provisional
Probab=72.80 E-value=68 Score=28.40 Aligned_cols=49 Identities=12% Similarity=0.024 Sum_probs=28.0
Q ss_pred eEEEEeCCCCeeEEeeccc--cccceEEEcCCCCEEEEEEcC-----CCeEEEEEeec
Q 026118 133 VLLKYDPSTNQTSLVLDGL--YFANGVALSEDERFLVVCESW-----KFRCVKHFLKV 183 (243)
Q Consensus 133 ~v~~~~~~~~~~~~~~~~~--~~~~gi~~~~dg~~l~v~~~~-----~~~i~~~~~~~ 183 (243)
.+++||+.+.+++.+..-. ....+++. -+++ +|+..-. .+.+.+||+..
T Consensus 457 ~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 457 IVESYNPVTNKWTELSSLNFPRINASLCI-FNNK-IYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred eEEEecCCCCceeeCCCCCcccccceEEE-ECCE-EEEEcCCcCCcccceeEEEeCCC
Confidence 4999999988887654211 11122332 2555 7776422 24677777654
No 325
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.82 E-value=87 Score=28.39 Aligned_cols=32 Identities=19% Similarity=0.094 Sum_probs=19.5
Q ss_pred cccccCCcccEEEcCCCcEEEEe-CCCcEEEEc
Q 026118 5 GEGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMH 36 (243)
Q Consensus 5 ~~g~~~~p~~i~~d~~g~l~~~~-~~~~i~~~~ 36 (243)
.||...+-..+++-|.=-|.++. .+|.+..++
T Consensus 223 LeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 223 LEGHTNNVSFVFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred hhcccccceEEEecCCCcEEEEecCCccEEEec
Confidence 35555566666666655555443 677777775
No 326
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=69.35 E-value=69 Score=27.04 Aligned_cols=149 Identities=13% Similarity=0.141 Sum_probs=74.4
Q ss_pred cccEEEcCCCc-EEEEeCCCcEEEEc--cCCc-eeEe--cccCCccccceEEccCCCEEEEEeCCCcEEEEe-c--C-C-
Q 026118 12 PEDVSVDGNGV-LYTATGDGWIKRMH--PNGT-WEDW--HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-E--E-G- 80 (243)
Q Consensus 12 p~~i~~d~~g~-l~~~~~~~~i~~~~--~~g~-~~~~--~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~--~-g- 80 (243)
+..++..+.|+ |++++...+.+.++ .+.+ .+.+ .....++. .+.+..+..-..+++..+-++.++ - . +
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~-ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPT-AISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcc-eeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 44445555665 55666555544444 2221 1111 11224455 666654444325555444455555 1 1 3
Q ss_pred cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEE
Q 026118 81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVAL 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~ 159 (243)
.+.+. .......+|++.+|+++.++-.. ...-+|.+|... -..+.+. .......+|++
T Consensus 144 ~~~~l-----GhvSml~dVavS~D~~~IitaDR---------------DEkIRvs~ypa~-f~IesfclGH~eFVS~isl 202 (390)
T KOG3914|consen 144 CEPIL-----GHVSMLLDVAVSPDDQFIITADR---------------DEKIRVSRYPAT-FVIESFCLGHKEFVSTISL 202 (390)
T ss_pred cchhh-----hhhhhhheeeecCCCCEEEEecC---------------CceEEEEecCcc-cchhhhccccHhheeeeee
Confidence 22221 12345668899999887776322 122234444322 2222221 22344566776
Q ss_pred cCCCCEEEEEEcCCCeEEEEEeecC
Q 026118 160 SEDERFLVVCESWKFRCVKHFLKVS 184 (243)
Q Consensus 160 ~~dg~~l~v~~~~~~~i~~~~~~~~ 184 (243)
-+ +. +.++..+++.|+.+++..+
T Consensus 203 ~~-~~-~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 203 TD-NY-LLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred cc-Cc-eeeecCCCCcEEEEecccC
Confidence 53 43 5667678889999988643
No 327
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.34 E-value=83 Score=27.96 Aligned_cols=132 Identities=15% Similarity=0.154 Sum_probs=71.0
Q ss_pred CCCcEEEEc-cCCce-eEecccCC------cccc-ceEEccCCCEEEEEeCCCcEEEEe-c-CCcEEE--EeccCCCccc
Q 026118 28 GDGWIKRMH-PNGTW-EDWHQVGS------QSLL-GLTTTKENNVIIVCDSQQGLLKVS-E-EGVTVL--VSQFNGSQLR 94 (243)
Q Consensus 28 ~~~~i~~~~-~~g~~-~~~~~~~~------~~~~-~i~~~~~g~l~~v~~~~~gl~~~~-~-~g~~~~--~~~~~~~~~~ 94 (243)
...+|+.+| ..|++ ..|..... .|.+ +--+++.+.+ ++....+|+++| + .+...+ ...-+-...+
T Consensus 354 ~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~Tl--vGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~ 431 (644)
T KOG2395|consen 354 EQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTL--VGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKN 431 (644)
T ss_pred CcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccE--EeecCCceEEecccccCcceeeeeecccccccc
Confidence 446789998 56653 44443211 0110 1122244444 666667899999 3 332111 1111111223
Q ss_pred CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccc-cceEEEcCCCCEEEEEEcCC
Q 026118 95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF-ANGVALSEDERFLVVCESWK 173 (243)
Q Consensus 95 ~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~-~~gi~~~~dg~~l~v~~~~~ 173 (243)
.-++.+...+|.+-++. ..|.|-.||.-..+.....+++.. ...+.++.+|+++..+..
T Consensus 432 nFsc~aTT~sG~IvvgS------------------~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-- 491 (644)
T KOG2395|consen 432 NFSCFATTESGYIVVGS------------------LKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-- 491 (644)
T ss_pred ccceeeecCCceEEEee------------------cCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc--
Confidence 45577888889888873 335666677643333334444443 356788899997776532
Q ss_pred CeEEEEEe
Q 026118 174 FRCVKHFL 181 (243)
Q Consensus 174 ~~i~~~~~ 181 (243)
..|..++.
T Consensus 492 tyLlLi~t 499 (644)
T KOG2395|consen 492 TYLLLIDT 499 (644)
T ss_pred cEEEEEEE
Confidence 35655554
No 328
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=69.16 E-value=24 Score=31.91 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=44.4
Q ss_pred CccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE-EeeccccccceEEEcCCCCEEEEEEcCCC
Q 026118 96 ANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS-LVLDGLYFANGVALSEDERFLVVCESWKF 174 (243)
Q Consensus 96 ~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~-~~~~~~~~~~gi~~~~dg~~l~v~~~~~~ 174 (243)
+.+++++|+|++..+--. ........|..++..+-... .+.........|+|+|||++|.-. ..+.
T Consensus 528 v~~l~~s~~gnliASaCK------------S~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsv-sRDR 594 (764)
T KOG1063|consen 528 VYALAISPTGNLIASACK------------SSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSV-SRDR 594 (764)
T ss_pred EEEEEecCCCCEEeehhh------------hCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEe-ecCc
Confidence 456888899998887311 11233456777776532211 122333445789999999977655 3455
Q ss_pred eEEEEEee
Q 026118 175 RCVKHFLK 182 (243)
Q Consensus 175 ~i~~~~~~ 182 (243)
.+..|...
T Consensus 595 t~sl~~~~ 602 (764)
T KOG1063|consen 595 TVSLYEVQ 602 (764)
T ss_pred eEEeeeee
Confidence 66666654
No 329
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=68.71 E-value=44 Score=29.62 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=36.5
Q ss_pred CceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118 131 HGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 131 ~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 182 (243)
+|.|..||...+ ........-.|+-++++|+|..+.|+ ...+.|..||..
T Consensus 280 DgSiiLyD~~~~-~t~~~ka~~~P~~iaWHp~gai~~V~-s~qGelQ~FD~A 329 (545)
T PF11768_consen 280 DGSIILYDTTRG-VTLLAKAEFIPTLIAWHPDGAIFVVG-SEQGELQCFDMA 329 (545)
T ss_pred CCeEEEEEcCCC-eeeeeeecccceEEEEcCCCcEEEEE-cCCceEEEEEee
Confidence 467888998754 34444445678999999999955555 567889999875
No 330
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=68.47 E-value=51 Score=29.86 Aligned_cols=116 Identities=12% Similarity=0.030 Sum_probs=54.4
Q ss_pred cccceEEccCCCEEEEEeCCCc-EEEEe-cCCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCccccccccccc
Q 026118 51 SLLGLTTTKENNVIIVCDSQQG-LLKVS-EEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSG 128 (243)
Q Consensus 51 ~~~~i~~~~~g~l~~v~~~~~g-l~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~ 128 (243)
.. +++.+++|++ ...-...| |..++ ..+-.++.+...... ..-..|.+.=||++.+... |..
T Consensus 723 If-~~AWSpdGr~-~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvg-tRgARi~wacdgr~viv~G---fdk---------- 786 (1012)
T KOG1445|consen 723 IF-GIAWSPDGRR-IATVCKDGTLRVYEPRSREQPVYEGKGPVG-TRGARILWACDGRIVIVVG---FDK---------- 786 (1012)
T ss_pred ee-EEEECCCCcc-eeeeecCceEEEeCCCCCCCccccCCCCcc-CcceeEEEEecCcEEEEec---ccc----------
Confidence 34 8899999998 44433445 55555 344333332111111 1111234444676555431 110
Q ss_pred CCCceEEEEeCCCCeeEEeec----cccccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118 129 EPHGVLLKYDPSTNQTSLVLD----GLYFANGVALSEDERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 129 ~~~g~v~~~~~~~~~~~~~~~----~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 182 (243)
...-.|..||.++-...++.. .-..+-=..+|.|.+.|+++.-++..|+.|.+-
T Consensus 787 ~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 787 SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence 011134455554332222211 111111124567777788887777777777654
No 331
>PHA02790 Kelch-like protein; Provisional
Probab=67.84 E-value=85 Score=27.53 Aligned_cols=168 Identities=10% Similarity=0.031 Sum_probs=79.9
Q ss_pred CCcEEEEeC-C-----CcEEEEcc-CCceeEecccC-CccccceEEccCCCEEEEEeCC---CcEEEEe-cCC-cEEEEe
Q 026118 20 NGVLYTATG-D-----GWIKRMHP-NGTWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQ---QGLLKVS-EEG-VTVLVS 86 (243)
Q Consensus 20 ~g~l~~~~~-~-----~~i~~~~~-~g~~~~~~~~~-~~~~~~i~~~~~g~l~~v~~~~---~gl~~~~-~~g-~~~~~~ 86 (243)
++.||+... + ..+.++++ .+++....... .+...+++ .-+|++ |+.... ..+.+++ .++ ...+..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~i-YviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKL-YVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEE-EEECCcCCCCceEEEECCCCeEEECCC
Confidence 456776531 1 23667774 44455443211 11121232 245667 777643 2367777 333 333221
Q ss_pred ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-cccc-ceEEEcCCCC
Q 026118 87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFA-NGVALSEDER 164 (243)
Q Consensus 87 ~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-~~~~-~gi~~~~dg~ 164 (243)
-+ .+ ..-.+ ++.-+|.||+..... .....+.+|||.+.+++....- .... .+++ .-+++
T Consensus 349 l~--~~-r~~~~-~~~~~g~IYviGG~~--------------~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~ 409 (480)
T PHA02790 349 LL--KP-RCNPA-VASINNVIYVIGGHS--------------ETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRR 409 (480)
T ss_pred CC--CC-CcccE-EEEECCEEEEecCcC--------------CCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCE
Confidence 11 11 11112 233478999862110 0113577899998888765321 1111 1232 23565
Q ss_pred EEEEEEcCCCeEEEEEeecCCCcceEEeccCCC-CCCCceEECCCCCEEEEEe
Q 026118 165 FLVVCESWKFRCVKHFLKVSGRTDREIFIDNLP-GGPDNVNLARDGSFWISII 216 (243)
Q Consensus 165 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~lwv~~~ 216 (243)
||+.. +...+|++.. ..++...+... ..-.+++. -+|.||+...
T Consensus 410 -IYv~G---G~~e~ydp~~---~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG 454 (480)
T PHA02790 410 -LFLVG---RNAEFYCESS---NTWTLIDDPIYPRDNPELII-VDNKLLLIGG 454 (480)
T ss_pred -EEEEC---CceEEecCCC---CcEeEcCCCCCCccccEEEE-ECCEEEEECC
Confidence 99885 3466777654 33444332111 11223433 3678998654
No 332
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=67.77 E-value=99 Score=28.28 Aligned_cols=65 Identities=6% Similarity=0.079 Sum_probs=34.1
Q ss_pred cccEEEcCCCcEEEEe------CCCcEEEEccCC--ceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe
Q 026118 12 PEDVSVDGNGVLYTAT------GDGWIKRMHPNG--TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (243)
Q Consensus 12 p~~i~~d~~g~l~~~~------~~~~i~~~~~~g--~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~ 77 (243)
--+++.+++|+|..+. ....|+.++... +...+....-... -|+|++||++|..+..+.-+..+.
T Consensus 528 v~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT-~l~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 528 VYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVT-RLAFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred EEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEE-EEEECCCCcEEEEeecCceEEeee
Confidence 3467888888888664 123455555211 1111111111223 689999999855555433333333
No 333
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=67.63 E-value=67 Score=26.29 Aligned_cols=138 Identities=14% Similarity=0.093 Sum_probs=69.5
Q ss_pred cEEEEeCCCcEEEEc-cCCc-ee---EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCccc
Q 026118 22 VLYTATGDGWIKRMH-PNGT-WE---DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLR 94 (243)
Q Consensus 22 ~l~~~~~~~~i~~~~-~~g~-~~---~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~ 94 (243)
-+|+++.+.++..+| .+-+ .. ++....+... .++++ |+..|++-++.||..+| .+- -..+.......+
T Consensus 140 ~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~-~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~-- 214 (370)
T COG5276 140 YAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTH-DVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGP-- 214 (370)
T ss_pred EEEEeeccCcEEEEECCCCCCceeeeeeccCCCCce-eEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCC--
Confidence 467776555666666 2211 11 1112122223 45554 66668988888999998 443 222222222111
Q ss_pred CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe-eEEe-eccccccceE-EEcCCCCEEEEEEc
Q 026118 95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ-TSLV-LDGLYFANGV-ALSEDERFLVVCES 171 (243)
Q Consensus 95 ~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~-~~~~-~~~~~~~~gi-~~~~dg~~l~v~~~ 171 (243)
...++.+. +.+.|+++.. .+|+.+|.++-+ ...+ ......|.++ .+.--+++.|+.+
T Consensus 215 g~~sv~vs-dnr~y~vvy~------------------egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvad- 274 (370)
T COG5276 215 GTYSVSVS-DNRAYLVVYD------------------EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVAD- 274 (370)
T ss_pred ceEEEEec-CCeeEEEEcc------------------cceEEEecCCCCCceEeeccccCCcccccceecccceeeeec-
Confidence 33444443 4577777543 367777776432 1221 1112223222 2223466799996
Q ss_pred CCCeEEEEEeecC
Q 026118 172 WKFRCVKHFLKVS 184 (243)
Q Consensus 172 ~~~~i~~~~~~~~ 184 (243)
....+-.++.+++
T Consensus 275 ga~gl~~idisnp 287 (370)
T COG5276 275 GAKGLPIIDISNP 287 (370)
T ss_pred cccCceeEeccCC
Confidence 4566777777643
No 334
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=67.59 E-value=20 Score=29.52 Aligned_cols=73 Identities=14% Similarity=0.122 Sum_probs=0.0
Q ss_pred CCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe-----eccccccceEEEcCCCCEEEEEEcCCCeEE
Q 026118 103 SDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-----LDGLYFANGVALSEDERFLVVCESWKFRCV 177 (243)
Q Consensus 103 ~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~-----~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~ 177 (243)
+.+.+|+. .|+-..|.--++-+...|.||.+|++..+.... ..........+|+.||. +.+.......|+
T Consensus 304 ~~c~iWfi----rf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vw 378 (385)
T KOG1034|consen 304 PMCDIWFI----RFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVW 378 (385)
T ss_pred CccceEEE----EEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc-EEEEEeCCCcEE
Q ss_pred EEE
Q 026118 178 KHF 180 (243)
Q Consensus 178 ~~~ 180 (243)
|+|
T Consensus 379 rwd 381 (385)
T KOG1034|consen 379 RWD 381 (385)
T ss_pred EEE
No 335
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=67.06 E-value=1.2e+02 Score=28.96 Aligned_cols=150 Identities=15% Similarity=0.170 Sum_probs=86.8
Q ss_pred cCCcccEEEcC-CCcEEEEe-CCCcEEEEccCCceeEe--cccCCccccceEEccCCCEEEEEeCCC--cEEEEecCC--
Q 026118 9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWEDW--HQVGSQSLLGLTTTKENNVIIVCDSQQ--GLLKVSEEG-- 80 (243)
Q Consensus 9 ~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~~~~~--~~~~~~~~~~i~~~~~g~l~~v~~~~~--gl~~~~~~g-- 80 (243)
.-.|+++++|- .+.+|.++ ....+...+.++..... ......+. .+++++...+++..+++. .+.+-..+|
T Consensus 479 ~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~l~~~r-~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~ 557 (877)
T KOG1215|consen 479 LCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKDLDLPR-SIAVDPEKGLMFWTDWGQPPRIERASLDGSE 557 (877)
T ss_pred ccccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEecCCCCcc-ceeeccccCeeEEecCCCCchhhhhcCCCCC
Confidence 56799999995 66899887 34445555444443221 12124556 888988766657777653 233333345
Q ss_pred cEEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE-EeeccccccceEE
Q 026118 81 VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS-LVLDGLYFANGVA 158 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~-~~~~~~~~~~gi~ 158 (243)
...+... ....+++++.|- +..+|..+.. ..-.+.+++-++...+ ........|.+++
T Consensus 558 ~~~l~~~----~~~~p~glt~d~~~~~~yw~d~~----------------~~~~i~~~~~~g~~r~~~~~~~~~~p~~~~ 617 (877)
T KOG1215|consen 558 RAVLVTN----GILWPNGLTIDYETDRLYWADAK----------------LDYTIESANMDGQNRRVVDSEDLPHPFGLS 617 (877)
T ss_pred ceEEEeC----CccCCCcceEEeecceeEEEccc----------------CCcceeeeecCCCceEEeccccCCCceEEE
Confidence 3333221 145688888886 5678888643 1124566666533322 2234567777777
Q ss_pred EcCCCCEEEEEEcCCCeEEEEEe
Q 026118 159 LSEDERFLVVCESWKFRCVKHFL 181 (243)
Q Consensus 159 ~~~dg~~l~v~~~~~~~i~~~~~ 181 (243)
...+ ++|+++.....+.+...
T Consensus 618 ~~~~--~iyw~d~~~~~~~~~~~ 638 (877)
T KOG1215|consen 618 VFED--YIYWTDWSNRAISRAEK 638 (877)
T ss_pred Eecc--eeEEeeccccceEeeec
Confidence 6543 48888876665555443
No 336
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=66.41 E-value=76 Score=26.42 Aligned_cols=113 Identities=14% Similarity=0.185 Sum_probs=62.8
Q ss_pred CCCEEEEEeCCC---cEEEEe--cCC-cEEEEeccCCC-cccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCc
Q 026118 60 ENNVIIVCDSQQ---GLLKVS--EEG-VTVLVSQFNGS-QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHG 132 (243)
Q Consensus 60 ~g~l~~v~~~~~---gl~~~~--~~g-~~~~~~~~~~~-~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g 132 (243)
||..+.|..... +|+.+. ..| ..++.....+- .-.++.-|..-..|++|++..++... .--
T Consensus 142 DGe~VLvvsR~~~~pHLLkvsdLK~g~inpI~LdlTgVtgGTf~yNmgAl~nGH~Y~asLSG~~~------------SPL 209 (442)
T PF15416_consen 142 DGEHVLVVSRGTTKPHLLKVSDLKAGEINPIPLDLTGVTGGTFSYNMGALVNGHSYLASLSGGKA------------SPL 209 (442)
T ss_pred CCcEEEEEecCCCCceeeehhHhhcCCccceeeecccccCcccccchhhhcCCeEEEEeccCCCC------------Cce
Confidence 454434544322 455555 345 55544322221 12344455555689999987543211 112
Q ss_pred eEEEEeCCCCeeEEeecc-----------ccccceEEEcCCCC-EEEEEEcCCCeEEEEEeecC
Q 026118 133 VLLKYDPSTNQTSLVLDG-----------LYFANGVALSEDER-FLVVCESWKFRCVKHFLKVS 184 (243)
Q Consensus 133 ~v~~~~~~~~~~~~~~~~-----------~~~~~gi~~~~dg~-~l~v~~~~~~~i~~~~~~~~ 184 (243)
.||.+..-+...+.++.- ..-..++.+|.+|+ ++++.+.....+.|+++.+.
T Consensus 210 KiY~w~tPts~PevIa~inV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdnaat~ilR~~vsn~ 273 (442)
T PF15416_consen 210 KIYYWETPTSAPEVIADINVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNAATNILRFTVSNY 273 (442)
T ss_pred EEEEecCCCCCceEEEeeeeccCcccccccCcceeEEeccCCceEEEecCCccceEEEEEccCc
Confidence 688877666666554321 11124577777776 67788777778999888754
No 337
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=66.16 E-value=73 Score=26.18 Aligned_cols=107 Identities=12% Similarity=0.086 Sum_probs=55.1
Q ss_pred ceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEeccCCCcccCCccEEEc-C-CCcEEEEeCCCCCCcccccccccccCC
Q 026118 54 GLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQFNGSQLRFANDVIEA-S-DGSLYFTVSSTKFTPAEYYLDLVSGEP 130 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d-~-~G~l~v~~~~~~~~~~~~~~~~~~~~~ 130 (243)
++.++++ ++ .|+. .+.++.|. ++..+.+.. .+. ...|.|++.- + ...-+++=. +..
T Consensus 99 ~V~l~r~-ri-Vvvl-~~~I~VytF~~n~k~l~~-~et--~~NPkGlC~~~~~~~k~~LafP---------------g~k 157 (346)
T KOG2111|consen 99 AVKLRRD-RI-VVVL-ENKIYVYTFPDNPKLLHV-IET--RSNPKGLCSLCPTSNKSLLAFP---------------GFK 157 (346)
T ss_pred eEEEcCC-eE-EEEe-cCeEEEEEcCCChhheee-eec--ccCCCceEeecCCCCceEEEcC---------------CCc
Confidence 5566554 44 4444 56788887 655222211 010 1235555443 3 233344321 234
Q ss_pred CceEEEEeCCCCee---EEeeccccccceEEEcCCCCEEEEEEcCCCeEEEE-Eee
Q 026118 131 HGVLLKYDPSTNQT---SLVLDGLYFANGVALSEDERFLVVCESWKFRCVKH-FLK 182 (243)
Q Consensus 131 ~g~v~~~~~~~~~~---~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~-~~~ 182 (243)
.|.|-..|....+. ..+.........++++-+|. +..+....+.+.|+ |..
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTE 212 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcC
Confidence 46777777764443 11222223345688899998 66666677887775 443
No 338
>smart00284 OLF Olfactomedin-like domains.
Probab=66.05 E-value=66 Score=25.62 Aligned_cols=102 Identities=13% Similarity=0.049 Sum_probs=47.3
Q ss_pred cEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-cccc-ceEEEcCCCCEEEEEEcC---
Q 026118 98 DVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFA-NGVALSEDERFLVVCESW--- 172 (243)
Q Consensus 98 ~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-~~~~-~gi~~~~dg~~l~v~~~~--- 172 (243)
++++|..| ||+.=+. ......-.|.++||.+-+++..+.. ...+ .+=+|=-=|. ||++.+.
T Consensus 132 DlAvDE~G-LWvIYat------------~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmvCGv-LY~~~s~~~~ 197 (255)
T smart00284 132 DLAVDENG-LWVIYAT------------EQNAGKIVISKLNPATLTIENTWITTYNKRSASNAFMICGI-LYVTRSLGSK 197 (255)
T ss_pred EEEEcCCc-eEEEEec------------cCCCCCEEEEeeCcccceEEEEEEcCCCcccccccEEEeeE-EEEEccCCCC
Confidence 67888777 7775111 0011122456999987777665432 1111 1111112254 8888641
Q ss_pred CCe-EEEEEeecCCCcceEEeccCCCCCCCceEECCCC-CEEE
Q 026118 173 KFR-CVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDG-SFWI 213 (243)
Q Consensus 173 ~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G-~lwv 213 (243)
+.. -+.||..+.......+......+....|.-.+.. .||+
T Consensus 198 ~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~ 240 (255)
T smart00284 198 GEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYA 240 (255)
T ss_pred CcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEE
Confidence 223 3556655433222223222222333445555443 4665
No 339
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.50 E-value=23 Score=31.22 Aligned_cols=65 Identities=12% Similarity=0.070 Sum_probs=45.4
Q ss_pred cccEEEcCCCcEEEEeCCCcEEEEccCC-ceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe
Q 026118 12 PEDVSVDGNGVLYTATGDGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (243)
Q Consensus 12 p~~i~~d~~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~ 77 (243)
=.|++...+|.|.++..+|.|..++.-+ +.++..+..+.+...+.+..+|+. .+++...-|+.++
T Consensus 433 Fsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKw-il~Tc~tyLlLi~ 498 (644)
T KOG2395|consen 433 FSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKW-ILATCKTYLLLID 498 (644)
T ss_pred cceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcE-EEEecccEEEEEE
Confidence 3467777889999999888898888433 233333334555557888899998 7887766666665
No 340
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=64.53 E-value=26 Score=29.70 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=26.2
Q ss_pred ceEEEcCCCCEEEEEEcCCCeEEEEEeecC
Q 026118 155 NGVALSEDERFLVVCESWKFRCVKHFLKVS 184 (243)
Q Consensus 155 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~ 184 (243)
..|.+|-|.++||++....+-|..||++++
T Consensus 315 TDilISmDDRFLYvs~WLHGDirQYdIsDP 344 (476)
T KOG0918|consen 315 TDILISLDDRFLYVSNWLHGDIRQYDISDP 344 (476)
T ss_pred heeEEeecCcEEEEEeeeecceeeeccCCC
Confidence 568889999999999998888999998754
No 341
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=62.79 E-value=47 Score=27.50 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=39.0
Q ss_pred ccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCE
Q 026118 149 DGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSF 211 (243)
Q Consensus 149 ~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l 211 (243)
++......+.++|||+.+..+....-+|.++.+.+.+ ...+.....+ ..|+++.++|+.
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~---~~~~~~pK~~-~kg~~f~~dg~f 147 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK---GYLLPHPKTN-VKGYAFHPDGQF 147 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEeccce---eEEecccccC-ceeEEECCCCce
Confidence 3444556789999998888887777888888876532 1111112222 378999999973
No 342
>smart00284 OLF Olfactomedin-like domains.
Probab=62.57 E-value=78 Score=25.23 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=38.3
Q ss_pred CCCcEEEEeCCCCCCcccccccccccCCCce-EEEEeCCCCeeEEee----ccccccceEEEcCCCCEEEEEEcCCCeEE
Q 026118 103 SDGSLYFTVSSTKFTPAEYYLDLVSGEPHGV-LLKYDPSTNQTSLVL----DGLYFANGVALSEDERFLVVCESWKFRCV 177 (243)
Q Consensus 103 ~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~-v~~~~~~~~~~~~~~----~~~~~~~gi~~~~dg~~l~v~~~~~~~i~ 177 (243)
--|.||++++.. ....+ -|.||..+++...+. ........|..+|..+.||+=+. +.+.
T Consensus 184 vCGvLY~~~s~~--------------~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wdn--g~~l 247 (255)
T smart00284 184 ICGILYVTRSLG--------------SKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWNN--GHLV 247 (255)
T ss_pred EeeEEEEEccCC--------------CCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEeC--CeEE
Confidence 358999986521 12233 477898876544321 12233456888887777988754 5566
Q ss_pred EEEe
Q 026118 178 KHFL 181 (243)
Q Consensus 178 ~~~~ 181 (243)
.|++
T Consensus 248 ~Y~v 251 (255)
T smart00284 248 HYDI 251 (255)
T ss_pred EEEE
Confidence 6665
No 343
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=61.18 E-value=1.7e+02 Score=28.63 Aligned_cols=171 Identities=12% Similarity=0.020 Sum_probs=83.6
Q ss_pred EEEc---CCCcEEEEeCCCcEEEEccCCceeE--ecccCCccccceEEc-cCCCEEEEEeCCCc-EEEEe-cCC-----c
Q 026118 15 VSVD---GNGVLYTATGDGWIKRMHPNGTWED--WHQVGSQSLLGLTTT-KENNVIIVCDSQQG-LLKVS-EEG-----V 81 (243)
Q Consensus 15 i~~d---~~g~l~~~~~~~~i~~~~~~g~~~~--~~~~~~~~~~~i~~~-~~g~l~~v~~~~~g-l~~~~-~~g-----~ 81 (243)
+.+| -.|.|+++.+-.-|..+|.+..... ++.......+.|.-+ ..|++ +++...+| |-.|| .-- +
T Consensus 1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~-i~AGfaDGsvRvyD~R~a~~ds~v 1247 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNI-IAAGFADGSVRVYDRRMAPPDSLV 1247 (1387)
T ss_pred eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCce-EEEeecCCceEEeecccCCccccc
Confidence 5555 3667777755555677775444332 222111111134333 44788 77777666 44555 211 1
Q ss_pred EEEEeccCCCcccCCccEEEcCCC--cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-----cc-c
Q 026118 82 TVLVSQFNGSQLRFANDVIEASDG--SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-----LY-F 153 (243)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~d~~G--~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-----~~-~ 153 (243)
........ ...+..+..-+.| .+.-+ ...|.|+.+|......+.+... .+ .
T Consensus 1248 ~~~R~h~~---~~~Iv~~slq~~G~~elvSg------------------s~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~ 1306 (1387)
T KOG1517|consen 1248 CVYREHND---VEPIVHLSLQRQGLGELVSG------------------SQDGDIQLLDLRMSSKETFLTIVAHWEYGSA 1306 (1387)
T ss_pred eeecccCC---cccceeEEeecCCCcceeee------------------ccCCeEEEEecccCcccccceeeeccccCcc
Confidence 11111111 1113333444433 33333 2356788888764222221110 11 2
Q ss_pred cceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEe---ccCCCCCCCceEECCCC
Q 026118 154 ANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIF---IDNLPGGPDNVNLARDG 209 (243)
Q Consensus 154 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~d~~G 209 (243)
...|.+++.-. ++.+... +.|..|+.+++.+...+.. ....-+.+..|++.+.-
T Consensus 1307 lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1307 LTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred ceeeeeccCCC-eeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchh
Confidence 45688888777 6666544 7888899887654443322 11222345567776654
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=60.49 E-value=1.2e+02 Score=26.52 Aligned_cols=136 Identities=17% Similarity=0.146 Sum_probs=57.6
Q ss_pred CcccEEEcCCCcEEEEeCCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe--cCC-cEEEEec
Q 026118 11 HPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EEG-VTVLVSQ 87 (243)
Q Consensus 11 ~p~~i~~d~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~--~~g-~~~~~~~ 87 (243)
.|..|...|+|+..+...+|.-..+... .+..... +... .+++...+++ .+.+....+..+. .+. .+.+...
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~-~~r~k~~--G~g~-~~vw~~~n~y-Av~~~~~~I~I~kn~~~~~~k~i~~~ 108 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTAL-AWRNKAF--GSGL-SFVWSSRNRY-AVLESSSTIKIYKNFKNEVVKSIKLP 108 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETT-TTEEEEE--EE-S-EEEE-TSSEE-EEE-TTS-EEEEETTEE-TT-----S
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEcc-CCccccc--Ccee-EEEEecCccE-EEEECCCeEEEEEcCccccceEEcCC
Confidence 5999999999976544444544444311 1111111 2233 4555555554 4433323333322 111 2222111
Q ss_pred cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEE
Q 026118 88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLV 167 (243)
Q Consensus 88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~ 167 (243)
..+.+|.. |.+..... .+.|+.||-+++++.+-..-. ....+.|+++|+.+-
T Consensus 109 ------~~~~~If~---G~LL~~~~------------------~~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~va 160 (443)
T PF04053_consen 109 ------FSVEKIFG---GNLLGVKS------------------SDFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVA 160 (443)
T ss_dssp ------S-EEEEE----SSSEEEEE------------------TTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEE
T ss_pred ------cccceEEc---CcEEEEEC------------------CCCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEE
Confidence 11223322 77555432 236999999877655433321 146789999998666
Q ss_pred EEEcCCCeEEEEEe
Q 026118 168 VCESWKFRCVKHFL 181 (243)
Q Consensus 168 v~~~~~~~i~~~~~ 181 (243)
+... +.++.++.
T Consensus 161 l~t~--~~i~il~~ 172 (443)
T PF04053_consen 161 LVTK--DSIYILKY 172 (443)
T ss_dssp EE-S---SEEEEEE
T ss_pred EEeC--CeEEEEEe
Confidence 6644 34444443
No 345
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=60.46 E-value=23 Score=18.45 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=19.2
Q ss_pred CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE
Q 026118 104 DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL 146 (243)
Q Consensus 104 ~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~ 146 (243)
||++|.+++... ....|.|++++++ +....
T Consensus 1 dg~lYGTT~~GG------------~~~~GTvf~~~~~-g~~t~ 30 (34)
T TIGR03803 1 GGTLYGTTSGGG------------ASGFGTLYRLSTA-GGTTV 30 (34)
T ss_pred CCcEEEEcccCC------------CCCceeEEEEcCC-CCeEE
Confidence 578888876321 1235789999998 44443
No 346
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=60.08 E-value=1.4e+02 Score=27.21 Aligned_cols=26 Identities=4% Similarity=0.089 Sum_probs=20.3
Q ss_pred ceEEccCCCEEEEEeCCCcEEEEe-cC
Q 026118 54 GLTTTKENNVIIVCDSQQGLLKVS-EE 79 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~~~~gl~~~~-~~ 79 (243)
.+..|..|..||+.=.++.||.|+ ..
T Consensus 276 nL~lDssGt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred EEEecCCCCeEEEEecCCcEEEEeccc
Confidence 578898898767666677899999 53
No 347
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=59.73 E-value=84 Score=24.70 Aligned_cols=109 Identities=16% Similarity=0.096 Sum_probs=61.2
Q ss_pred cccceEEcc-CCCEEEEEeCCCcEEEEe-cCC-cEEEEe-ccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccc
Q 026118 51 SLLGLTTTK-ENNVIIVCDSQQGLLKVS-EEG-VTVLVS-QFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDL 125 (243)
Q Consensus 51 ~~~~i~~~~-~g~l~~v~~~~~gl~~~~-~~g-~~~~~~-~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~ 125 (243)
-. +|.+-| +|.| |......+||.+| .+| ...+.. ...........++.+.| -.+|-+..+
T Consensus 29 l~-GID~Rpa~G~L-Ygl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~------------- 93 (236)
T PF14339_consen 29 LV-GIDFRPANGQL-YGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSN------------- 93 (236)
T ss_pred EE-EEEeecCCCCE-EEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEcc-------------
Confidence 34 787775 5666 8877678899999 778 555421 11111112245666777 356666532
Q ss_pred cccCCCceEEEEeCCCCeeEEeeccc------------cccceEEEcC-----C-CCEEEEEEcCCCeEEEE
Q 026118 126 VSGEPHGVLLKYDPSTNQTSLVLDGL------------YFANGVALSE-----D-ERFLVVCESWKFRCVKH 179 (243)
Q Consensus 126 ~~~~~~g~v~~~~~~~~~~~~~~~~~------------~~~~gi~~~~-----d-g~~l~v~~~~~~~i~~~ 179 (243)
.+.=+|+++++|.+......+ ....+.++.. . ...||-.+...+.|+.-
T Consensus 94 -----~GqNlR~npdtGav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q 160 (236)
T PF14339_consen 94 -----TGQNLRLNPDTGAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQ 160 (236)
T ss_pred -----CCcEEEECCCCCCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEe
Confidence 245678999988743221111 1112333332 1 45677777766766665
No 348
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=59.63 E-value=59 Score=29.36 Aligned_cols=103 Identities=12% Similarity=0.051 Sum_probs=59.3
Q ss_pred CCEEEEEeCCCcEEEEe-cCC-cEE----EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceE
Q 026118 61 NNVIIVCDSQQGLLKVS-EEG-VTV----LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVL 134 (243)
Q Consensus 61 g~l~~v~~~~~gl~~~~-~~g-~~~----~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v 134 (243)
-++|++++..+++..+| ..- ++. +.. .....+.+.++...|....+|+-++ ...+
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~--~~aH~nAifDl~wapge~~lVsasG-----------------DsT~ 124 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKK--PLAHKNAIFDLKWAPGESLLVSASG-----------------DSTI 124 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcc--cccccceeEeeccCCCceeEEEccC-----------------Ccee
Confidence 35669999888888888 322 221 111 1111345556666673345565433 1233
Q ss_pred EEEeCCCCeeEE---eeccccccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118 135 LKYDPSTNQTSL---VLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 135 ~~~~~~~~~~~~---~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 182 (243)
-.+|.++.++.. .........+++|.+....++++...++.|..+|..
T Consensus 125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 444444444332 223334456788888888788888888888888864
No 349
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=59.16 E-value=49 Score=33.47 Aligned_cols=52 Identities=15% Similarity=0.300 Sum_probs=30.6
Q ss_pred ccEEEcCCCcEEEEeCCCcEEEEccC-CceeEecccCCccccceEEccCCCEEEE
Q 026118 13 EDVSVDGNGVLYTATGDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIV 66 (243)
Q Consensus 13 ~~i~~d~~g~l~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~i~~~~~g~l~~v 66 (243)
.+|..+++|..|-- .+++||.|++. +.|+........+.+.|....||.+ |.
T Consensus 366 Tgv~~~~~ge~lRl-Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~l-YA 418 (1774)
T PF11725_consen 366 TGVHTDPDGEQLRL-HDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKL-YA 418 (1774)
T ss_pred hccccCCCCCeEEe-ecCceeeeccccceecCCCCcccchhhhhcccCCCce-Ee
Confidence 34555566655543 45678888754 5555322223345546777788888 77
No 350
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=58.75 E-value=1e+02 Score=26.26 Aligned_cols=53 Identities=9% Similarity=0.077 Sum_probs=37.7
Q ss_pred CceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecC
Q 026118 131 HGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVS 184 (243)
Q Consensus 131 ~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~ 184 (243)
.+.|...|..+|+.-.-........++.|+.||. ++++...+..|..+|+..+
T Consensus 153 Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~ 205 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRG 205 (472)
T ss_pred CceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCCC
Confidence 3467777777776443333334556899999999 7777788889999998654
No 351
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=55.73 E-value=1.3e+02 Score=25.64 Aligned_cols=31 Identities=23% Similarity=0.086 Sum_probs=23.0
Q ss_pred ccceEEEcCCCCEEEEEEcCCCeEEEEEeecC
Q 026118 153 FANGVALSEDERFLVVCESWKFRCVKHFLKVS 184 (243)
Q Consensus 153 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~ 184 (243)
-+..++++++++++ ++...++.++.+|...+
T Consensus 125 diydL~Ws~d~~~l-~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 125 DIYDLAWSPDSNFL-VSGSVDNSVRLWDVHAG 155 (434)
T ss_pred chhhhhccCCCcee-eeeeccceEEEEEeccc
Confidence 45679999999944 45466788999998753
No 352
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.57 E-value=1.2e+02 Score=24.38 Aligned_cols=73 Identities=5% Similarity=-0.158 Sum_probs=39.1
Q ss_pred CCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCC
Q 026118 95 FANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK 173 (243)
Q Consensus 95 ~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~ 173 (243)
.+...++.| ..+++.+.++. ..-+++-++.. |+...+.......-.+-+++=...+.++...+
T Consensus 149 ~Iy~a~~sp~~~nlfas~Sgd---------------~~l~lwdvr~~-gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd 212 (311)
T KOG0277|consen 149 CIYQAAFSPHIPNLFASASGD---------------GTLRLWDVRSP-GKFMSIEAHNSEILCCDWSKYNHNVLATGGVD 212 (311)
T ss_pred EEEEEecCCCCCCeEEEccCC---------------ceEEEEEecCC-CceeEEEeccceeEeecccccCCcEEEecCCC
Confidence 344455666 46677765542 22345655555 44333322112233445555444477776777
Q ss_pred CeEEEEEeec
Q 026118 174 FRCVKHFLKV 183 (243)
Q Consensus 174 ~~i~~~~~~~ 183 (243)
+.|..+|+..
T Consensus 213 ~~vr~wDir~ 222 (311)
T KOG0277|consen 213 NLVRGWDIRN 222 (311)
T ss_pred ceEEEEehhh
Confidence 8888888753
No 353
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=51.61 E-value=1.4e+02 Score=27.60 Aligned_cols=174 Identities=13% Similarity=0.083 Sum_probs=81.2
Q ss_pred cccEEEcCCCcEEEE-eCCCcEEEEc-cCCceeE-ecccCCccccceEEccCCCEEEEEeC--CCcEEEEe-c-CCcEEE
Q 026118 12 PEDVSVDGNGVLYTA-TGDGWIKRMH-PNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDS--QQGLLKVS-E-EGVTVL 84 (243)
Q Consensus 12 p~~i~~d~~g~l~~~-~~~~~i~~~~-~~g~~~~-~~~~~~~~~~~i~~~~~g~l~~v~~~--~~gl~~~~-~-~g~~~~ 84 (243)
-++|.++....|..+ ..+|.|-.+| ..++..+ ..-...++. .+.|.|-|.+ + +.+ ...+..+| . .|....
T Consensus 73 IeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~-sv~f~P~~~~-~-a~gStdtd~~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 73 IESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNIT-SVDFHPYGEF-F-ASGSTDTDLKIWDIRKKGCSHT 149 (825)
T ss_pred ceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcc-eeeeccceEE-e-ccccccccceehhhhccCceee
Confidence 345666655544433 3555666666 2332211 111112344 6778887766 3 222 23455555 3 553333
Q ss_pred EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccceEEEcCCC
Q 026118 85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDE 163 (243)
Q Consensus 85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg 163 (243)
... ....++.+.+.|+|+ |+.+-+ ....+-..|...|++..-.. .....+.+.++|-.
T Consensus 150 ~~s----~~~vv~~l~lsP~Gr-~v~~g~----------------ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e 208 (825)
T KOG0267|consen 150 YKS----HTRVVDVLRLSPDGR-WVASGG----------------EDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLE 208 (825)
T ss_pred ecC----CcceeEEEeecCCCc-eeeccC----------------CcceeeeecccccccccccccccccccccccCchh
Confidence 221 224556778889985 444322 11234444554344432211 11223344455433
Q ss_pred CEEEEEEcCCCeEEEEEeecCCCcceEEeccC--CCCCCCceEECCCCCEEEEE
Q 026118 164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDN--LPGGPDNVNLARDGSFWISI 215 (243)
Q Consensus 164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~G~lwv~~ 215 (243)
.|.-....+..+-.++.. .++.+... ....+.+.+++++|.+..+.
T Consensus 209 -~Lla~Gs~d~tv~f~dle-----tfe~I~s~~~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 209 -VLLAPGSSDRTVRFWDLE-----TFEVISSGKPETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred -hhhccCCCCceeeeeccc-----eeEEeeccCCccCCceeeeecCCceeeecC
Confidence 244444444555555543 23333322 22345667888888765543
No 354
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=51.58 E-value=1.6e+02 Score=25.43 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=38.5
Q ss_pred cEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee
Q 026118 72 GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL 148 (243)
Q Consensus 72 gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~ 148 (243)
-||+++ .+. .+.+.. +.+++.+.-..+++-+.|.+|+-. ++|..+... ..-...-+|.++..+.+++++.
T Consensus 99 dLy~Yn~k~~eWkk~~s-pn~P~pRsshq~va~~s~~l~~fG--GEfaSPnq~----qF~HYkD~W~fd~~trkweql~ 170 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVS-PNAPPPRSSHQAVAVPSNILWLFG--GEFASPNQE----QFHHYKDLWLFDLKTRKWEQLE 170 (521)
T ss_pred eeeEEeccccceeEecc-CCCcCCCccceeEEeccCeEEEec--cccCCcchh----hhhhhhheeeeeeccchheeec
Confidence 478888 444 554433 333333444566677888888742 223322110 0001224888999888888764
No 355
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=50.18 E-value=1.3e+02 Score=23.89 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=21.4
Q ss_pred ccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee
Q 026118 97 NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL 148 (243)
Q Consensus 97 ~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~ 148 (243)
.++++|..| ||+.=.. .+....-.|.++|+.+-+.+...
T Consensus 125 iD~avDE~G-LWviYat------------~~~~g~iv~skLdp~tl~~e~tW 163 (249)
T KOG3545|consen 125 IDLAVDENG-LWVIYAT------------PENAGTIVLSKLDPETLEVERTW 163 (249)
T ss_pred ccceecccc-eeEEecc------------cccCCcEEeeccCHHHhheeeee
Confidence 367888777 7775211 01112223578999766655544
No 356
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=49.92 E-value=42 Score=26.88 Aligned_cols=59 Identities=8% Similarity=0.138 Sum_probs=35.4
Q ss_pred ccEEEcCCCcEEEEe-CCCcEEEEc-cCCc---eeEecccCCccccceEEccCCCEEEEEeCCCcEE
Q 026118 13 EDVSVDGNGVLYTAT-GDGWIKRMH-PNGT---WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLL 74 (243)
Q Consensus 13 ~~i~~d~~g~l~~~~-~~~~i~~~~-~~g~---~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~ 74 (243)
.++.+-+|+.++.+- .+++|+.++ ...+ +..++. ...+ .++|+++-.++..+..+..|.
T Consensus 255 ~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs--agvn-~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 255 SGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS--AGVN-AVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred cceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh--ccee-EEEeCCCCchhhhccCCceEE
Confidence 456777888877554 788888887 3333 222333 3345 789998877634444333443
No 357
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=49.76 E-value=1.3e+02 Score=23.74 Aligned_cols=71 Identities=21% Similarity=0.128 Sum_probs=45.3
Q ss_pred CCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--c---cc-cccceEEEcCCCCEEE
Q 026118 95 FANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--D---GL-YFANGVALSEDERFLV 167 (243)
Q Consensus 95 ~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--~---~~-~~~~gi~~~~dg~~l~ 167 (243)
..-+|.+-| +|.||--.+ .++||.+|+.++....+- . .+ ....++-|+|.=+.|-
T Consensus 28 ~l~GID~Rpa~G~LYgl~~------------------~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlR 89 (236)
T PF14339_consen 28 SLVGIDFRPANGQLYGLGS------------------TGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLR 89 (236)
T ss_pred eEEEEEeecCCCCEEEEeC------------------CCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEE
Confidence 344566656 688887532 368999999999877661 1 11 2256778888555587
Q ss_pred EEEcCCCeEEEEEeecC
Q 026118 168 VCESWKFRCVKHFLKVS 184 (243)
Q Consensus 168 v~~~~~~~i~~~~~~~~ 184 (243)
+... +++=+|++++.+
T Consensus 90 vvs~-~GqNlR~npdtG 105 (236)
T PF14339_consen 90 VVSN-TGQNLRLNPDTG 105 (236)
T ss_pred EEcc-CCcEEEECCCCC
Confidence 7643 456667777643
No 358
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=49.26 E-value=28 Score=20.38 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=16.6
Q ss_pred ceEEEcCCCCEEEEEEcC-------CCeEEEEEeec
Q 026118 155 NGVALSEDERFLVVCESW-------KFRCVKHFLKV 183 (243)
Q Consensus 155 ~gi~~~~dg~~l~v~~~~-------~~~i~~~~~~~ 183 (243)
..+++-+||+ ++++... ...|.||+.++
T Consensus 4 ~~~~~q~DGk-Ilv~G~~~~~~~~~~~~l~Rln~DG 38 (55)
T TIGR02608 4 YAVAVQSDGK-ILVAGYVDNSSGNNDFVLARLNADG 38 (55)
T ss_pred EEEEECCCCc-EEEEEEeecCCCcccEEEEEECCCC
Confidence 4678889999 5554332 12366666554
No 359
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=48.93 E-value=79 Score=28.93 Aligned_cols=89 Identities=12% Similarity=0.043 Sum_probs=51.1
Q ss_pred CceEEEEeCCCCeeEEeec--cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccC-C--CCCCCceEE
Q 026118 131 HGVLLKYDPSTNQTSLVLD--GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDN-L--PGGPDNVNL 205 (243)
Q Consensus 131 ~g~v~~~~~~~~~~~~~~~--~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~--~~~~~~i~~ 205 (243)
.|.||.|+..++..+.... .......+.++++.. +.++...++.|..+-.+.........+... . ......++.
T Consensus 54 ~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~W 132 (726)
T KOG3621|consen 54 AGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEW 132 (726)
T ss_pred cceEEEEecCchhhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEe
Confidence 3678888887666554432 122233456666665 655556677888777664221222222111 1 224556888
Q ss_pred CCCCC-EEEEEecCCc
Q 026118 206 ARDGS-FWISIIKMDP 220 (243)
Q Consensus 206 d~~G~-lwv~~~~~~~ 220 (243)
+++|. +|.|+..|-.
T Consensus 133 s~~~~k~ysGD~~Gkv 148 (726)
T KOG3621|consen 133 SKNGMKLYSGDSQGKV 148 (726)
T ss_pred cccccEEeecCCCceE
Confidence 99986 8988877654
No 360
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=48.73 E-value=35 Score=18.68 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=15.0
Q ss_pred CCCEEEEEeCCCcEEEEe
Q 026118 60 ENNVIIVCDSQQGLLKVS 77 (243)
Q Consensus 60 ~g~l~~v~~~~~gl~~~~ 77 (243)
.|+++|++....|+..+|
T Consensus 10 ~g~yaYva~~~~Gl~IvD 27 (42)
T PF08309_consen 10 SGNYAYVADGNNGLVIVD 27 (42)
T ss_pred ECCEEEEEeCCCCEEEEE
Confidence 467779998888999998
No 361
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=48.18 E-value=1.5e+02 Score=24.26 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=23.2
Q ss_pred ccccceEEccCCCEEEEEeCCCcEEEEe-cCC
Q 026118 50 QSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG 80 (243)
Q Consensus 50 ~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g 80 (243)
..+ ++++..+|+.+|.+.....+..++ .+|
T Consensus 248 kvn-gla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 248 KVN-GLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred eee-eeeecccchhhhhccCccceEEeecccC
Confidence 345 899999998778888777887777 555
No 362
>PLN02193 nitrile-specifier protein
Probab=47.80 E-value=1.9e+02 Score=25.26 Aligned_cols=108 Identities=9% Similarity=0.053 Sum_probs=53.5
Q ss_pred CCCEEEEEeCC------CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCC
Q 026118 60 ENNVIIVCDSQ------QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPH 131 (243)
Q Consensus 60 ~g~l~~v~~~~------~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~ 131 (243)
++++ |+.... ..++++| .+. ...+......+..+....++. -++.||+.--. . .....
T Consensus 228 ~~~l-YvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~---~---------~~~~~ 293 (470)
T PLN02193 228 GSTL-YVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGV---S---------ATARL 293 (470)
T ss_pred CCEE-EEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCC---C---------CCCCc
Confidence 4555 776532 2488888 554 444332111111122223333 35678876211 0 00112
Q ss_pred ceEEEEeCCCCeeEEeecc--ccc---cceEEEcCCCCEEEEEEcC----CCeEEEEEeec
Q 026118 132 GVLLKYDPSTNQTSLVLDG--LYF---ANGVALSEDERFLVVCESW----KFRCVKHFLKV 183 (243)
Q Consensus 132 g~v~~~~~~~~~~~~~~~~--~~~---~~gi~~~~dg~~l~v~~~~----~~~i~~~~~~~ 183 (243)
..+++||+.+.++..+... ... -..++. -+++ +|+..-. .+.+++||+..
T Consensus 294 ~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gk-iyviGG~~g~~~~dv~~yD~~t 352 (470)
T PLN02193 294 KTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGK-VWVVYGFNGCEVDDVHYYDPVQ 352 (470)
T ss_pred ceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCc-EEEEECCCCCccCceEEEECCC
Confidence 3588999998887765421 111 123333 3566 7765322 25688888765
No 363
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.49 E-value=2.2e+02 Score=25.96 Aligned_cols=144 Identities=13% Similarity=0.062 Sum_probs=72.2
Q ss_pred EEEcCCCc-EEEEeCCCcEEEEcc-CCc-eeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEe-cCC--cEEEEec
Q 026118 15 VSVDGNGV-LYTATGDGWIKRMHP-NGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-EEG--VTVLVSQ 87 (243)
Q Consensus 15 i~~d~~g~-l~~~~~~~~i~~~~~-~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~~g--~~~~~~~ 87 (243)
|-+-|..- +..+-.+|.|..++- +.+ ++.+. ...-|.....|-+..+. .++..+ ..|..|+ .++ ++.+...
T Consensus 19 Vd~HPtePw~la~LynG~V~IWnyetqtmVksfe-V~~~PvRa~kfiaRknW-iv~GsDD~~IrVfnynt~ekV~~FeAH 96 (794)
T KOG0276|consen 19 VDFHPTEPWILAALYNGDVQIWNYETQTMVKSFE-VSEVPVRAAKFIARKNW-IVTGSDDMQIRVFNYNTGEKVKTFEAH 96 (794)
T ss_pred eecCCCCceEEEeeecCeeEEEecccceeeeeee-ecccchhhheeeeccce-EEEecCCceEEEEecccceeeEEeecc
Confidence 33334443 233337788888873 333 33332 22334323333333344 233222 3566677 555 3333221
Q ss_pred cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe-eccccccceEEEcCCCCEE
Q 026118 88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYFANGVALSEDERFL 166 (243)
Q Consensus 88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~~~~~gi~~~~dg~~l 166 (243)
..++.++++.|.-=..++.+.. ..-++|-++.. -...+. .........++|.|....-
T Consensus 97 -----~DyIR~iavHPt~P~vLtsSDD---------------m~iKlW~we~~-wa~~qtfeGH~HyVMqv~fnPkD~nt 155 (794)
T KOG0276|consen 97 -----SDYIRSIAVHPTLPYVLTSSDD---------------MTIKLWDWENE-WACEQTFEGHEHYVMQVAFNPKDPNT 155 (794)
T ss_pred -----ccceeeeeecCCCCeEEecCCc---------------cEEEEeeccCc-eeeeeEEcCcceEEEEEEecCCCccc
Confidence 2467788988876566664431 12244544432 122222 2333456788998866557
Q ss_pred EEEEcCCCeEEEEEe
Q 026118 167 VVCESWKFRCVKHFL 181 (243)
Q Consensus 167 ~v~~~~~~~i~~~~~ 181 (243)
+++.+.+..|-++.+
T Consensus 156 FaS~sLDrTVKVWsl 170 (794)
T KOG0276|consen 156 FASASLDRTVKVWSL 170 (794)
T ss_pred eeeeeccccEEEEEc
Confidence 777666666666554
No 364
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=47.05 E-value=41 Score=29.11 Aligned_cols=21 Identities=19% Similarity=0.601 Sum_probs=17.4
Q ss_pred CCCCceEECCCCCEEEEEecC
Q 026118 198 GGPDNVNLARDGSFWISIIKM 218 (243)
Q Consensus 198 ~~~~~i~~d~~G~lwv~~~~~ 218 (243)
.+|.+|.+|+||..|+.+...
T Consensus 467 ylphgl~~dkdgf~~~tdvas 487 (501)
T KOG3567|consen 467 YLPHGLSIDKDGFYWVTDVAS 487 (501)
T ss_pred ecCCcceecCCCcEEeecccc
Confidence 469999999999999976543
No 365
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=46.94 E-value=1.6e+02 Score=24.06 Aligned_cols=73 Identities=21% Similarity=0.132 Sum_probs=37.7
Q ss_pred cCCCEEEEEeCC------CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCC
Q 026118 59 KENNVIIVCDSQ------QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEP 130 (243)
Q Consensus 59 ~~g~l~~v~~~~------~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~ 130 (243)
-++++ |+.... ..++++| .+. ...+...+ ..+ +. ...++.-++.||+..-.. ...
T Consensus 122 ~~~~i-Yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-~~~-r~-~~~~~~~~~~iYv~GG~~-------------~~~ 184 (323)
T TIGR03548 122 KDGTL-YVGGGNRNGKPSNKSYLFNLETQEWFELPDFP-GEP-RV-QPVCVKLQNELYVFGGGS-------------NIA 184 (323)
T ss_pred ECCEE-EEEeCcCCCccCceEEEEcCCCCCeeECCCCC-CCC-CC-cceEEEECCEEEEEcCCC-------------Ccc
Confidence 34666 776532 2478888 444 44433211 111 11 122334567898863110 001
Q ss_pred CceEEEEeCCCCeeEEee
Q 026118 131 HGVLLKYDPSTNQTSLVL 148 (243)
Q Consensus 131 ~g~v~~~~~~~~~~~~~~ 148 (243)
...+++||+++.+++.+.
T Consensus 185 ~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 185 YTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred ccceEEEecCCCeeEECC
Confidence 124689999988887664
No 366
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=46.65 E-value=1.8e+02 Score=26.08 Aligned_cols=114 Identities=15% Similarity=0.080 Sum_probs=64.2
Q ss_pred cCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--ccccceEEEcC-CCCEEEEEE
Q 026118 94 RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGVALSE-DERFLVVCE 170 (243)
Q Consensus 94 ~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~~gi~~~~-dg~~l~v~~ 170 (243)
..++++....+|.+.++.+. .-++...|+-..++...... .......-|=| .++.+.++.
T Consensus 51 GCVN~LeWn~dG~lL~SGSD-----------------D~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sg 113 (758)
T KOG1310|consen 51 GCVNCLEWNADGELLASGSD-----------------DTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSG 113 (758)
T ss_pred ceecceeecCCCCEEeecCC-----------------cceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEec
Confidence 46788999999998887543 23566667753333333221 22223344434 344588888
Q ss_pred cCCCeEEEEEeecC---CCcc----eEEeccCCCCCCCceEECCCC-C-EEEEEecCCchhhh
Q 026118 171 SWKFRCVKHFLKVS---GRTD----REIFIDNLPGGPDNVNLARDG-S-FWISIIKMDPKGIQ 224 (243)
Q Consensus 171 ~~~~~i~~~~~~~~---~~~~----~~~~~~~~~~~~~~i~~d~~G-~-lwv~~~~~~~~~~~ 224 (243)
.++..|..||++.- ...+ .......-..+...|+..++| + +|.+.-.|.....+
T Consensus 114 AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyD 176 (758)
T KOG1310|consen 114 AGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYD 176 (758)
T ss_pred cCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeec
Confidence 88888999998731 1111 000011122345568887776 4 78877666544443
No 367
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=46.40 E-value=2.2e+02 Score=25.45 Aligned_cols=72 Identities=7% Similarity=-0.078 Sum_probs=46.9
Q ss_pred CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCC-
Q 026118 95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK- 173 (243)
Q Consensus 95 ~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~- 173 (243)
-+.++...+.|+=|....+ ..-..+-.+|++ +.+.... +..--|.+.|+|.|+.+.++..++
T Consensus 272 PVhdv~W~~s~~EF~VvyG---------------fMPAkvtifnlr-~~~v~df-~egpRN~~~fnp~g~ii~lAGFGNL 334 (566)
T KOG2315|consen 272 PVHDVTWSPSGREFAVVYG---------------FMPAKVTIFNLR-GKPVFDF-PEGPRNTAFFNPHGNIILLAGFGNL 334 (566)
T ss_pred CceEEEECCCCCEEEEEEe---------------cccceEEEEcCC-CCEeEeC-CCCCccceEECCCCCEEEEeecCCC
Confidence 3568888888875555332 122367778887 4433221 122346799999999999987754
Q ss_pred -CeEEEEEeec
Q 026118 174 -FRCVKHFLKV 183 (243)
Q Consensus 174 -~~i~~~~~~~ 183 (243)
+.+..+|...
T Consensus 335 ~G~mEvwDv~n 345 (566)
T KOG2315|consen 335 PGDMEVWDVPN 345 (566)
T ss_pred CCceEEEeccc
Confidence 6788888754
No 368
>PF13964 Kelch_6: Kelch motif
Probab=45.63 E-value=53 Score=18.18 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=15.0
Q ss_pred CCceEEEEeCCCCeeEEee
Q 026118 130 PHGVLLKYDPSTNQTSLVL 148 (243)
Q Consensus 130 ~~g~v~~~~~~~~~~~~~~ 148 (243)
....+++||+.+.+++.+.
T Consensus 26 ~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 26 YSNDVERYDPETNTWEQLP 44 (50)
T ss_pred ccccEEEEcCCCCcEEECC
Confidence 3467999999998887753
No 369
>PLN02153 epithiospecifier protein
Probab=45.45 E-value=1.7e+02 Score=24.08 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=13.3
Q ss_pred ceEEEEeCCCCeeEEee
Q 026118 132 GVLLKYDPSTNQTSLVL 148 (243)
Q Consensus 132 g~v~~~~~~~~~~~~~~ 148 (243)
..+++||+.+.+++.+.
T Consensus 101 ~~v~~yd~~t~~W~~~~ 117 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLT 117 (341)
T ss_pred CcEEEEECCCCEEEEec
Confidence 46899999988877653
No 370
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=44.63 E-value=1.7e+02 Score=23.83 Aligned_cols=51 Identities=14% Similarity=-0.110 Sum_probs=29.3
Q ss_pred ceEEEEeCCCCeeEEeecc--ccccceEEEcCCCCEEEEEEcCC----CeEEEEEeec
Q 026118 132 GVLLKYDPSTNQTSLVLDG--LYFANGVALSEDERFLVVCESWK----FRCVKHFLKV 183 (243)
Q Consensus 132 g~v~~~~~~~~~~~~~~~~--~~~~~gi~~~~dg~~l~v~~~~~----~~i~~~~~~~ 183 (243)
..+++||+.+.+++.+..- .......+..-+++ ||+..-.+ ..+++||+..
T Consensus 139 ~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~-iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNE-LYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred ceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCE-EEEEcCCCCccccceEEEecCC
Confidence 5799999998888776421 11222222233455 88874322 2356788764
No 371
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=43.11 E-value=2.1e+02 Score=24.42 Aligned_cols=67 Identities=10% Similarity=0.073 Sum_probs=39.3
Q ss_pred CCcccEEEcCCC-cEEEEeCCCcEEEEccC-C-ceeEeccc--CCccccceEEccCCCEEEEEeCCCcEEEEe
Q 026118 10 NHPEDVSVDGNG-VLYTATGDGWIKRMHPN-G-TWEDWHQV--GSQSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (243)
Q Consensus 10 ~~p~~i~~d~~g-~l~~~~~~~~i~~~~~~-g-~~~~~~~~--~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~ 77 (243)
.+--+++++... .||.+...+.|...|.. . .+..+... .+... +|..+|-.+.|.+.+..+.|..+|
T Consensus 106 SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY-~m~~~P~DN~~~~~t~~~~V~~~D 177 (609)
T KOG4227|consen 106 SNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVY-HMDQHPTDNTLIVVTRAKLVSFID 177 (609)
T ss_pred cceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCccccee-ecccCCCCceEEEEecCceEEEEe
Confidence 455688999644 57888777888888732 2 22222211 12345 778887777745554444455565
No 372
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=43.08 E-value=2.5e+02 Score=25.20 Aligned_cols=27 Identities=15% Similarity=-0.134 Sum_probs=16.0
Q ss_pred cceEEEcCCCCEEEEEEcCCCeEEEEE
Q 026118 154 ANGVALSEDERFLVVCESWKFRCVKHF 180 (243)
Q Consensus 154 ~~gi~~~~dg~~l~v~~~~~~~i~~~~ 180 (243)
...+.+++||..+-++......++.+-
T Consensus 259 ifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 259 IFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred eEEEEEcCCCceeeccccCceEEEeee
Confidence 345788888886666654433344433
No 373
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=42.57 E-value=2.1e+02 Score=24.11 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCeeEEeecccc-c--cceEEEcCCCCEEEEEE
Q 026118 132 GVLLKYDPSTNQTSLVLDGLY-F--ANGVALSEDERFLVVCE 170 (243)
Q Consensus 132 g~v~~~~~~~~~~~~~~~~~~-~--~~gi~~~~dg~~l~v~~ 170 (243)
..|++||+.+.++..+..-.. . ...++. -+++ ||+..
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~-~~~~-iYv~G 228 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVI-KGNK-LWLIN 228 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEE-ECCE-EEEEe
Confidence 469999999888876542211 1 123333 2455 88764
No 374
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=42.14 E-value=1.7e+02 Score=23.17 Aligned_cols=65 Identities=15% Similarity=0.023 Sum_probs=40.1
Q ss_pred EcCCCcEEEEeCCCCCCcccccccccccCCCce-EEEEeCCCCeeEEee----ccccccceEEEcCCCCEEEEEEcCCCe
Q 026118 101 EASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGV-LLKYDPSTNQTSLVL----DGLYFANGVALSEDERFLVVCESWKFR 175 (243)
Q Consensus 101 ~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~-v~~~~~~~~~~~~~~----~~~~~~~gi~~~~dg~~l~v~~~~~~~ 175 (243)
+--.|.||++++.. ..... -|.+|..+++.+.+. ........|..+|..+.||+=+. +.
T Consensus 177 FmvCGvLY~~~s~~--------------~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~--G~ 240 (250)
T PF02191_consen 177 FMVCGVLYATDSYD--------------TRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDN--GY 240 (250)
T ss_pred eeEeeEEEEEEECC--------------CCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEEC--Ce
Confidence 33468899987541 11123 478898877655432 22334567888998887998764 45
Q ss_pred EEEEEe
Q 026118 176 CVKHFL 181 (243)
Q Consensus 176 i~~~~~ 181 (243)
+..|++
T Consensus 241 ~v~Y~v 246 (250)
T PF02191_consen 241 QVTYDV 246 (250)
T ss_pred EEEEEE
Confidence 555654
No 375
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=42.13 E-value=2.1e+02 Score=23.98 Aligned_cols=143 Identities=8% Similarity=0.035 Sum_probs=77.2
Q ss_pred EEEEeCCCcEEEEcc-CC-ceeEecccCCccccceEEcc--CCCEEEEEeCCCcEEEEe-cCC--cEEEEeccCCCcccC
Q 026118 23 LYTATGDGWIKRMHP-NG-TWEDWHQVGSQSLLGLTTTK--ENNVIIVCDSQQGLLKVS-EEG--VTVLVSQFNGSQLRF 95 (243)
Q Consensus 23 l~~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~i~~~~--~g~l~~v~~~~~gl~~~~-~~g--~~~~~~~~~~~~~~~ 95 (243)
+-++-.++.|..+++ .+ .+..+.-.....+ ++.|.. ..+.++.+...+-|..+| +.. ..++. ....+ ..
T Consensus 43 vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N-~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~--~~~~~-~~ 118 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLEEFKGPPATTN-GVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS--WTQQS-GT 118 (376)
T ss_pred EEEEecCCeEEEEeccchhhhheecCCCCccc-ceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee--ccCCC-CC
Confidence 555557888888884 33 3444443333344 777743 456557777655566777 432 21111 11111 11
Q ss_pred CccEEEcC--CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe--eEEee-ccccccceEEEcCCCCEEEEEE
Q 026118 96 ANDVIEAS--DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ--TSLVL-DGLYFANGVALSEDERFLVVCE 170 (243)
Q Consensus 96 ~~~l~~d~--~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~--~~~~~-~~~~~~~gi~~~~dg~~l~v~~ 170 (243)
| -+++|. .++++.+... .......|+.+|-...+ ++.+. ....-...+.|+|..--+.++.
T Consensus 119 ~-f~~ld~nck~~ii~~GtE-------------~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG 184 (376)
T KOG1188|consen 119 P-FICLDLNCKKNIIACGTE-------------LTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG 184 (376)
T ss_pred c-ceEeeccCcCCeEEeccc-------------cccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee
Confidence 1 224444 5667766322 01233467777764221 11111 1223456789999666588888
Q ss_pred cCCCeEEEEEeec
Q 026118 171 SWKFRCVKHFLKV 183 (243)
Q Consensus 171 ~~~~~i~~~~~~~ 183 (243)
+.++-|-.||...
T Consensus 185 SvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 185 SVDGLVNLFDTKK 197 (376)
T ss_pred cccceEEeeecCC
Confidence 8888888898864
No 376
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=41.97 E-value=1.4e+02 Score=27.40 Aligned_cols=96 Identities=11% Similarity=0.067 Sum_probs=49.3
Q ss_pred EEcCCC-cEEEEeCCCcEEEEccCCceeEecccC---CccccceEEccCCCEEEEEeCCCcEE-EEe-cCC--cEE-EEe
Q 026118 16 SVDGNG-VLYTATGDGWIKRMHPNGTWEDWHQVG---SQSLLGLTTTKENNVIIVCDSQQGLL-KVS-EEG--VTV-LVS 86 (243)
Q Consensus 16 ~~d~~g-~l~~~~~~~~i~~~~~~g~~~~~~~~~---~~~~~~i~~~~~g~l~~v~~~~~gl~-~~~-~~g--~~~-~~~ 86 (243)
++|..+ .|-+|...|.+|.++.++......... +... .+.++++..+ .++....|.+ .+. ..+ ... +..
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~-~~~vs~~e~l-vAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITC-VRSVSSVEYL-VAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhhhcccccCccceEE-EEEecchhHh-hhhhcCCceEEeehhhccCCCcceeec
Confidence 345433 566777778888887544322222211 1222 4456666666 4444444533 333 222 222 222
Q ss_pred ccCCCcccCCccEEEcCCC-cEEEEeCC
Q 026118 87 QFNGSQLRFANDVIEASDG-SLYFTVSS 113 (243)
Q Consensus 87 ~~~~~~~~~~~~l~~d~~G-~l~v~~~~ 113 (243)
..+......+.+++.+++| ++|.+|+.
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~ 145 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQ 145 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCC
Confidence 2222223566788999988 58888754
No 377
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=41.80 E-value=2e+02 Score=23.69 Aligned_cols=75 Identities=11% Similarity=0.116 Sum_probs=47.2
Q ss_pred cccEEEcC-CCcEE-EEeCCCcEEEEc--cCCceeEecc-cCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEE
Q 026118 12 PEDVSVDG-NGVLY-TATGDGWIKRMH--PNGTWEDWHQ-VGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVL 84 (243)
Q Consensus 12 p~~i~~d~-~g~l~-~~~~~~~i~~~~--~~g~~~~~~~-~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~ 84 (243)
-..|++.| ...+. .+..++.|+.++ .+|....-.. ....|...++...||..+|++.-++.+-.+| .++ ...+
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v 109 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQV 109 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeee
Confidence 34588887 55566 455889888877 3444333111 1123433788889998768887767777888 666 5554
Q ss_pred Ee
Q 026118 85 VS 86 (243)
Q Consensus 85 ~~ 86 (243)
..
T Consensus 110 ~~ 111 (347)
T KOG0647|consen 110 AA 111 (347)
T ss_pred ee
Confidence 43
No 378
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=41.76 E-value=2e+02 Score=23.71 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=22.3
Q ss_pred ceEEEEeCCCCeeEEeecccccc-ceE-EE-cCCCCEEEEEE
Q 026118 132 GVLLKYDPSTNQTSLVLDGLYFA-NGV-AL-SEDERFLVVCE 170 (243)
Q Consensus 132 g~v~~~~~~~~~~~~~~~~~~~~-~gi-~~-~~dg~~l~v~~ 170 (243)
..+++||+.+.+++.+......+ .+. +. .-+++ ||+..
T Consensus 85 ~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~-IYviG 125 (346)
T TIGR03547 85 DDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQ-AYFTG 125 (346)
T ss_pred ccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCE-EEEEc
Confidence 36899999988888765222221 122 12 23565 88864
No 379
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=41.62 E-value=65 Score=18.06 Aligned_cols=29 Identities=3% Similarity=-0.080 Sum_probs=21.2
Q ss_pred cceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118 154 ANGVALSEDERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 154 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
...+.++|....+.++ ..++.|+.|+.+.
T Consensus 14 v~~~~w~P~mdLiA~~-t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 14 VSCMSWCPTMDLIALG-TEDGEVLVYRLNW 42 (47)
T ss_pred EEEEEECCCCCEEEEE-ECCCeEEEEECCC
Confidence 3468999999955555 4678898888754
No 380
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=41.47 E-value=2e+02 Score=23.66 Aligned_cols=61 Identities=16% Similarity=0.085 Sum_probs=34.5
Q ss_pred ccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEE
Q 026118 151 LYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISI 215 (243)
Q Consensus 151 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~ 215 (243)
....|+|+|+|...+|..+ -.++.+.-+|.+.. .+..... ..+.-...-++..+|.+|+-.
T Consensus 251 VYaVNsi~FhP~hgtlvTa-GsDGtf~FWDkdar--~kLk~s~-~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 251 VYAVNSIAFHPVHGTLVTA-GSDGTFSFWDKDAR--TKLKTSE-THPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred eEEecceEeecccceEEEe-cCCceEEEecchhh--hhhhccC-cCCCccceeEecCCCCEEEEE
Confidence 4567899999988745444 45677777776531 1111111 111112335667889887643
No 381
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=40.83 E-value=1.3e+02 Score=30.70 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=5.2
Q ss_pred EEEcCCCcEE
Q 026118 15 VSVDGNGVLY 24 (243)
Q Consensus 15 i~~d~~g~l~ 24 (243)
+..|+.|+|+
T Consensus 296 ~LLd~~G~L~ 305 (1774)
T PF11725_consen 296 QLLDNKGHLF 305 (1774)
T ss_pred eeecCCCcEE
Confidence 4445555554
No 382
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.63 E-value=3.4e+02 Score=25.82 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=31.0
Q ss_pred CCceEEEEeCCC----CeeEEe-eccccccceEEEcCCCCE-EEEEEcCCCeEEEEEeecC
Q 026118 130 PHGVLLKYDPST----NQTSLV-LDGLYFANGVALSEDERF-LVVCESWKFRCVKHFLKVS 184 (243)
Q Consensus 130 ~~g~v~~~~~~~----~~~~~~-~~~~~~~~gi~~~~dg~~-l~v~~~~~~~i~~~~~~~~ 184 (243)
.+|.|++|..+- +..... ..+.....|+++..+++. ++++.+ .+|..|...+.
T Consensus 145 ~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt--~~V~~y~l~gr 203 (933)
T KOG2114|consen 145 TNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATT--EQVMLYSLSGR 203 (933)
T ss_pred cCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEec--ceeEEEEecCC
Confidence 356777776542 111111 233445689999888886 566654 56777776643
No 383
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=38.41 E-value=3.4e+02 Score=25.45 Aligned_cols=177 Identities=11% Similarity=0.060 Sum_probs=77.3
Q ss_pred cccEEEcC-CCcEEEEe-CCCcEEEEcc---CCceeEecccCCccccceEEccCCCEEEEEeCC-Cc-EEEEe-cCC-cE
Q 026118 12 PEDVSVDG-NGVLYTAT-GDGWIKRMHP---NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QG-LLKVS-EEG-VT 82 (243)
Q Consensus 12 p~~i~~d~-~g~l~~~~-~~~~i~~~~~---~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~g-l~~~~-~~g-~~ 82 (243)
.+.+.+.+ .+..|++. +.|-+..+|. +.-...+... ..|...+...|++.+ +++.+ .+ +-.++ .+. ..
T Consensus 179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH-~GpV~c~nwhPnr~~--lATGGRDK~vkiWd~t~~~~~ 255 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAH-NGPVLCLNWHPNREW--LATGGRDKMVKIWDMTDSRAK 255 (839)
T ss_pred hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcc-cCceEEEeecCCCce--eeecCCCccEEEEeccCCCcc
Confidence 34466664 56667666 4455566662 2222212111 223335667797655 55433 34 44445 333 32
Q ss_pred EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe---eccccccceEEE
Q 026118 83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV---LDGLYFANGVAL 159 (243)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~---~~~~~~~~gi~~ 159 (243)
.+...... ..+..|.+-|+-..-+++.. ....-.|+.+|.. ....+. ........+|+|
T Consensus 256 ~~~tInTi---apv~rVkWRP~~~~hLAtcs--------------mv~dtsV~VWDvr-RPYIP~~t~~eH~~~vt~i~W 317 (839)
T KOG0269|consen 256 PKHTINTI---APVGRVKWRPARSYHLATCS--------------MVVDTSVHVWDVR-RPYIPYATFLEHTDSVTGIAW 317 (839)
T ss_pred ceeEEeec---ceeeeeeeccCccchhhhhh--------------ccccceEEEEeec-cccccceeeeccCccccceec
Confidence 22221111 12345666666543333221 0122357777764 333332 222344566777
Q ss_pred cCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118 160 SEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII 216 (243)
Q Consensus 160 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~ 216 (243)
.....-+.++-..++.|..-..... .++.-+ .-+.++.+...|.++.+.+
T Consensus 318 ~~~d~~~l~s~sKD~tv~qh~~kna--t~pid~-----a~~~~~s~g~~g~l~fa~n 367 (839)
T KOG0269|consen 318 DSGDRINLWSCSKDGTVLQHLFKNA--TTPIDL-----ANNGGLSVGQFGDLYFAVN 367 (839)
T ss_pred cCCCceeeEeecCccHHHHhhhhcc--cChhhh-----cCcccccccccCceeEEec
Confidence 5522223333333333332211110 000000 1234577778888888766
No 384
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=38.24 E-value=2.4e+02 Score=23.64 Aligned_cols=59 Identities=8% Similarity=0.134 Sum_probs=34.7
Q ss_pred ceEEccCCCEEEEEeCCCc------EEEEe-cCC-cEEEEe----ccCCCc--ccCCccEEEcCCC--cEEEEeCC
Q 026118 54 GLTTTKENNVIIVCDSQQG------LLKVS-EEG-VTVLVS----QFNGSQ--LRFANDVIEASDG--SLYFTVSS 113 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~~~~g------l~~~~-~~g-~~~~~~----~~~~~~--~~~~~~l~~d~~G--~l~v~~~~ 113 (243)
.|..-.+|+. |++...++ |+.+. ++- .+++.. .+++.. +.-..++..|..| -+||+++.
T Consensus 187 NmgAl~nGH~-Y~asLSG~~~SPLKiY~w~tPts~PevIa~inV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdna 261 (442)
T PF15416_consen 187 NMGALVNGHS-YLASLSGGKASPLKIYYWETPTSAPEVIADINVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNA 261 (442)
T ss_pred chhhhcCCeE-EEEeccCCCCCceEEEEecCCCCCceEEEeeeeccCcccccccCcceeEEeccCCceEEEecCCc
Confidence 3455578898 99986543 77887 655 555543 223222 2233456677655 58888653
No 385
>PTZ00486 apyrase Superfamily; Provisional
Probab=38.04 E-value=79 Score=26.40 Aligned_cols=18 Identities=6% Similarity=-0.175 Sum_probs=9.8
Q ss_pred CCCEEEEEEcCCCeEEEEE
Q 026118 162 DERFLVVCESWKFRCVKHF 180 (243)
Q Consensus 162 dg~~l~v~~~~~~~i~~~~ 180 (243)
+|+ ||..+..++-|++++
T Consensus 124 ngk-Lys~DDrTGiVy~i~ 141 (352)
T PTZ00486 124 NGK-LYGFDDRTGIVYEID 141 (352)
T ss_pred CCE-EEEEeCCceEEEEEE
Confidence 444 555555555555554
No 386
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=37.79 E-value=2.6e+02 Score=24.00 Aligned_cols=54 Identities=13% Similarity=-0.043 Sum_probs=35.3
Q ss_pred ceEEEEeCCCCeeEEeeccc-----cccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCC
Q 026118 132 GVLLKYDPSTNQTSLVLDGL-----YFANGVALSEDERFLVVCESWKFRCVKHFLKVSGR 186 (243)
Q Consensus 132 g~v~~~~~~~~~~~~~~~~~-----~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~ 186 (243)
..+-.+|..+.+++...... .-.+..+|||++.|+..+ ..+++|+.++..++++
T Consensus 363 dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAG-S~dgsv~iW~v~tgKl 421 (459)
T KOG0288|consen 363 DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAG-SADGSVYIWSVFTGKL 421 (459)
T ss_pred CceeeeecccccEEEEeeccccccccccceeEECCCCceeeec-cCCCcEEEEEccCceE
Confidence 45666777766655443211 124568999999955544 5678999999887543
No 387
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=37.20 E-value=3.1e+02 Score=24.69 Aligned_cols=63 Identities=21% Similarity=0.249 Sum_probs=39.9
Q ss_pred cCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcCCCCEEEEEE
Q 026118 94 RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSEDERFLVVCE 170 (243)
Q Consensus 94 ~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~ 170 (243)
...+.+-.+|.|+..+.-.- ....+.++.||.+-..++... ......+-+.+||.|+|+..+.
T Consensus 493 ~~~N~vfwsPkG~fvvva~l--------------~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAAL--------------VSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred cccceEEEcCCCcEEEEEEe--------------cccccceEEEecchhhhhhccCccccccccceECCCCCEEEEee
Confidence 45678889999986654210 123567999998743433332 2234567799999999665543
No 388
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=36.33 E-value=2.4e+02 Score=23.18 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=27.6
Q ss_pred ceEEEEeCCCCeeEEeecccc---ccceEEEcCCCCEEEEEEcC------CCeEEEEEeec
Q 026118 132 GVLLKYDPSTNQTSLVLDGLY---FANGVALSEDERFLVVCESW------KFRCVKHFLKV 183 (243)
Q Consensus 132 g~v~~~~~~~~~~~~~~~~~~---~~~gi~~~~dg~~l~v~~~~------~~~i~~~~~~~ 183 (243)
..+.+||+.+.+++.+..-.. .-.+++. -+++ ||+..-. ...++.|+++.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~y~~~~ 226 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVH-KGNK-LLLINGEIKPGLRTAEVKQYLFTG 226 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEE-ECCE-EEEEeeeeCCCccchheEEEEecC
Confidence 469999999888877542111 1123332 3555 8876321 12355566543
No 389
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.28 E-value=3e+02 Score=24.24 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=30.6
Q ss_pred cccEEEcCCCcEEEEeCCCcEEEEc---cCCc-eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe
Q 026118 12 PEDVSVDGNGVLYTATGDGWIKRMH---PNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (243)
Q Consensus 12 p~~i~~d~~g~l~~~~~~~~i~~~~---~~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~ 77 (243)
..++-+|......++...|++..+. ++.. ...+......+..+|.|++|.+.+.|-....-+-.++
T Consensus 25 sngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~n 94 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCN 94 (657)
T ss_pred ccceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEe
Confidence 3457777655444444444444333 2211 1222111122333788988888734433333444444
No 390
>COG5321 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.13 E-value=49 Score=23.28 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=24.9
Q ss_pred CCceEECCCCCEEEEEecCCchhhhhhhcChHHHH
Q 026118 200 PDNVNLARDGSFWISIIKMDPKGIQALQSCKERKQ 234 (243)
Q Consensus 200 ~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~ 234 (243)
.+-|+++++|.+||-....+-.-+....++|..+.
T Consensus 51 ADLials~kGeiwIiEiKssiEDfrvDrKWpdYr~ 85 (164)
T COG5321 51 ADLIALSPKGEIWIIEIKSSIEDFRVDRKWPDYRL 85 (164)
T ss_pred cceeeecCCCcEEEEEeecchhhhcccccCcchhh
Confidence 44588888888888877665555666667776664
No 391
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=32.32 E-value=3.3e+02 Score=23.93 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=14.2
Q ss_pred cCCccEEEcCCCcEEEEe
Q 026118 94 RFANDVIEASDGSLYFTV 111 (243)
Q Consensus 94 ~~~~~l~~d~~G~l~v~~ 111 (243)
..+.+|+++++|++-+|+
T Consensus 294 g~V~siAv~~~G~YMaTt 311 (545)
T KOG1272|consen 294 GPVSSIAVDRGGRYMATT 311 (545)
T ss_pred CCcceEEECCCCcEEeec
Confidence 346789999999877774
No 392
>PLN02153 epithiospecifier protein
Probab=31.93 E-value=2.9e+02 Score=22.73 Aligned_cols=50 Identities=10% Similarity=-0.039 Sum_probs=28.7
Q ss_pred ceEEEEeCCCCeeEEeeccc--ccc---ceEEEcCCCCEEEEEEc-------------CCCeEEEEEeec
Q 026118 132 GVLLKYDPSTNQTSLVLDGL--YFA---NGVALSEDERFLVVCES-------------WKFRCVKHFLKV 183 (243)
Q Consensus 132 g~v~~~~~~~~~~~~~~~~~--~~~---~gi~~~~dg~~l~v~~~-------------~~~~i~~~~~~~ 183 (243)
..|++||+++.++..+.... ..+ .+++. -+++ +|+..- ..+.+++||+..
T Consensus 159 ~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~-iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~ 226 (341)
T PLN02153 159 RTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV-VQGK-IWVVYGFATSILPGGKSDYESNAVQFFDPAS 226 (341)
T ss_pred ceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE-ECCe-EEEEeccccccccCCccceecCceEEEEcCC
Confidence 35889999988887654221 011 23333 3566 777421 124688888764
No 393
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=31.74 E-value=3.5e+02 Score=23.61 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=7.2
Q ss_pred ceEEEEeCCC
Q 026118 132 GVLLKYDPST 141 (243)
Q Consensus 132 g~v~~~~~~~ 141 (243)
+.+|.+++.-
T Consensus 120 ~KvYvi~~~p 129 (603)
T COG4880 120 GKVYVIDKNP 129 (603)
T ss_pred CeEEEEcCCC
Confidence 5788888753
No 394
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=30.99 E-value=3.9e+02 Score=23.92 Aligned_cols=107 Identities=11% Similarity=0.106 Sum_probs=56.5
Q ss_pred EEEEeCCCcEEEEc-cCCceeEecccCCc--cccceEEc--cCCCEEEEEeCCCcEEEEe-cCCcEEEEeccCCCcccCC
Q 026118 23 LYTATGDGWIKRMH-PNGTWEDWHQVGSQ--SLLGLTTT--KENNVIIVCDSQQGLLKVS-EEGVTVLVSQFNGSQLRFA 96 (243)
Q Consensus 23 l~~~~~~~~i~~~~-~~g~~~~~~~~~~~--~~~~i~~~--~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~~~~~~~~~~ 96 (243)
|..|+..|.|..++ ..|+++........ +. ....+ .-|-+ |.+.....+..++ ..+ ..+...... ...+
T Consensus 73 lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v-~~~~~~~~~~ci-yS~~ad~~v~~~~~~~~-~~~~~~~~~--~~~~ 147 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNV-NEILDAQRLGCI-YSVGADLKVVYILEKEK-VIIRIWKEQ--KPLV 147 (541)
T ss_pred EEeecCCccEEEEEecCCeEEEEEecCCCCCcc-eeeecccccCce-EecCCceeEEEEecccc-eeeeeeccC--CCcc
Confidence 44556667777776 45555544332111 11 12222 22334 6665545566776 343 222221111 2356
Q ss_pred ccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccc
Q 026118 97 NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF 153 (243)
Q Consensus 97 ~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~ 153 (243)
..+++.+||.+..+-+ ..|-.+|-+++++-...++...
T Consensus 148 ~sl~is~D~~~l~~as-------------------~~ik~~~~~~kevv~~ftgh~s 185 (541)
T KOG4547|consen 148 SSLCISPDGKILLTAS-------------------RQIKVLDIETKEVVITFTGHGS 185 (541)
T ss_pred ceEEEcCCCCEEEecc-------------------ceEEEEEccCceEEEEecCCCc
Confidence 6889999998887632 3677778777776554444443
No 395
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=30.85 E-value=2.8e+02 Score=22.19 Aligned_cols=71 Identities=11% Similarity=0.091 Sum_probs=44.2
Q ss_pred ccCCcccEEEcC-CCcEEEEeCCCcEEEEc-cCCceeEecccC-CccccceEE-ccCCCEEEEEeCCCcEEEEe-cCC
Q 026118 8 IVNHPEDVSVDG-NGVLYTATGDGWIKRMH-PNGTWEDWHQVG-SQSLLGLTT-TKENNVIIVCDSQQGLLKVS-EEG 80 (243)
Q Consensus 8 ~~~~p~~i~~d~-~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~-~~~~~~i~~-~~~g~l~~v~~~~~gl~~~~-~~g 80 (243)
++..-.++..|| .+.++++..++.+|.+| .+|+++...... .... .++- ..++.+ +.+..++-+..+| .++
T Consensus 113 evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH-~vv~R~~~~qi-lsG~EDGtvRvWd~kt~ 188 (325)
T KOG0649|consen 113 EVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH-SVVGRNANGQI-LSGAEDGTVRVWDTKTQ 188 (325)
T ss_pred cCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee-eeeecccCcce-eecCCCccEEEEecccc
Confidence 344555788886 56688777889999999 789887654421 1122 3333 466666 6666444455556 555
No 396
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.10 E-value=5e+02 Score=24.84 Aligned_cols=62 Identities=15% Similarity=0.318 Sum_probs=36.9
Q ss_pred EEEcC-CCcEEEEeCCCcEEEEcc-----CCceeEecccCCccccceEEccCCCE-EEEEeCCCcEEEEe
Q 026118 15 VSVDG-NGVLYTATGDGWIKRMHP-----NGTWEDWHQVGSQSLLGLTTTKENNV-IIVCDSQQGLLKVS 77 (243)
Q Consensus 15 i~~d~-~g~l~~~~~~~~i~~~~~-----~g~~~~~~~~~~~~~~~i~~~~~g~l-~~v~~~~~gl~~~~ 77 (243)
|++.. ...+.+|-.+|.|.++.- .|....+...+..|.+|+++..++.. +||++. ..|..+.
T Consensus 131 l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt-~~V~~y~ 199 (933)
T KOG2114|consen 131 LAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATT-EQVMLYS 199 (933)
T ss_pred EEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEec-ceeEEEE
Confidence 55553 334556667788877751 23323333444567669988777764 577774 5666666
No 397
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=29.74 E-value=4.2e+02 Score=23.93 Aligned_cols=114 Identities=7% Similarity=-0.056 Sum_probs=61.5
Q ss_pred cccceEEccCCCEEEEEeCCCcEEEEecCCcEEEEeccCCCcccCCccEEEcCC--CcEEEEeCCCCCCccccccccccc
Q 026118 51 SLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASD--GSLYFTVSSTKFTPAEYYLDLVSG 128 (243)
Q Consensus 51 ~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~l~~d~~--G~l~v~~~~~~~~~~~~~~~~~~~ 128 (243)
.+ .+....+|.+|..+..+..+..+|+-..+.+.. +.......+.++.+-|. .++.++..
T Consensus 53 VN-~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs-I~TgHtaNIFsvKFvP~tnnriv~sgA---------------- 114 (758)
T KOG1310|consen 53 VN-CLEWNADGELLASGSDDTRLIVWDPFEYKLLHS-ISTGHTANIFSVKFVPYTNNRIVLSGA---------------- 114 (758)
T ss_pred ec-ceeecCCCCEEeecCCcceEEeecchhcceeee-eecccccceeEEeeeccCCCeEEEecc----------------
Confidence 44 788889999855555456788888433121111 11112235667777663 34666532
Q ss_pred CCCceEEEEeCCCCe--------eEEe---eccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118 129 EPHGVLLKYDPSTNQ--------TSLV---LDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 129 ~~~g~v~~~~~~~~~--------~~~~---~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
....|..+|.+.-+ .++. ........-|+..|++-..+|+-..++.|..||+.-
T Consensus 115 -gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 115 -GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred -CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 23456667766311 1110 111223445777787722444446778999998753
No 398
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.22 E-value=2.3e+02 Score=27.50 Aligned_cols=152 Identities=9% Similarity=0.017 Sum_probs=69.3
Q ss_pred cEEEcCCCc-EEEEe-CCCcEEEEccCCceeEecccC----CccccceEEccC-CCEEEEEeCCC-cEEEEe-cCCcEEE
Q 026118 14 DVSVDGNGV-LYTAT-GDGWIKRMHPNGTWEDWHQVG----SQSLLGLTTTKE-NNVIIVCDSQQ-GLLKVS-EEGVTVL 84 (243)
Q Consensus 14 ~i~~d~~g~-l~~~~-~~~~i~~~~~~g~~~~~~~~~----~~~~~~i~~~~~-g~l~~v~~~~~-gl~~~~-~~g~~~~ 84 (243)
++-+.+.+. +..+. .+|.|+.+|.+.--+.+.... .... .++-+.+ .++ +...... ....+| +.. +++
T Consensus 121 gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~-~lsWNrkvqhI-LAS~s~sg~~~iWDlr~~-~pi 197 (1049)
T KOG0307|consen 121 GLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK-CLSWNRKVSHI-LASGSPSGRAVIWDLRKK-KPI 197 (1049)
T ss_pred eeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce-EeccchhhhHH-hhccCCCCCceeccccCC-Ccc
Confidence 355555443 44333 678888888444322222211 1111 2333322 233 2322222 455666 322 122
Q ss_pred EeccCCCcccCCccEEEcCCC--cEEEEeCCCCCCcccccccccccCCCceEEEEeCCC--CeeEEeeccccccceEEEc
Q 026118 85 VSQFNGSQLRFANDVIEASDG--SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST--NQTSLVLDGLYFANGVALS 160 (243)
Q Consensus 85 ~~~~~~~~~~~~~~l~~d~~G--~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~--~~~~~~~~~~~~~~gi~~~ 160 (243)
.............+++..|++ +++++.... ..-.|...|... --++.+.......-+|.+.
T Consensus 198 i~ls~~~~~~~~S~l~WhP~~aTql~~As~dd---------------~~PviqlWDlR~assP~k~~~~H~~GilslsWc 262 (1049)
T KOG0307|consen 198 IKLSDTPGRMHCSVLAWHPDHATQLLVASGDD---------------SAPVIQLWDLRFASSPLKILEGHQRGILSLSWC 262 (1049)
T ss_pred cccccCCCccceeeeeeCCCCceeeeeecCCC---------------CCceeEeecccccCCchhhhcccccceeeeccC
Confidence 111111122446688899987 477764331 112344445321 1111121222334456777
Q ss_pred CCCCEEEEEEcCCCeEEEEEeec
Q 026118 161 EDERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 161 ~dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
+.+..+.++...+++|..++.+.
T Consensus 263 ~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 263 PQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred CCCchhhhcccCCCCeeEecCCC
Confidence 66644666666677788777654
No 399
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=29.11 E-value=3.9e+02 Score=23.25 Aligned_cols=37 Identities=14% Similarity=0.027 Sum_probs=24.5
Q ss_pred ceEEEEeCCCCeeEEeecccccc-----ceEEEcCCCCEEEEE
Q 026118 132 GVLLKYDPSTNQTSLVLDGLYFA-----NGVALSEDERFLVVC 169 (243)
Q Consensus 132 g~v~~~~~~~~~~~~~~~~~~~~-----~gi~~~~dg~~l~v~ 169 (243)
+-||++|.++-++..+......| ..+.+.|+|. +++-
T Consensus 207 NDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~-i~vy 248 (521)
T KOG1230|consen 207 NDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGG-IVVY 248 (521)
T ss_pred eeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCc-EEEE
Confidence 46999999987777664332222 3477788888 5554
No 400
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=29.07 E-value=5.3e+02 Score=24.89 Aligned_cols=51 Identities=14% Similarity=0.023 Sum_probs=30.2
Q ss_pred eEEEEeCCCCeeEEe-eccccccceEEEcCCCCEEEE-EEc----CCCeEEEEEeec
Q 026118 133 VLLKYDPSTNQTSLV-LDGLYFANGVALSEDERFLVV-CES----WKFRCVKHFLKV 183 (243)
Q Consensus 133 ~v~~~~~~~~~~~~~-~~~~~~~~gi~~~~dg~~l~v-~~~----~~~~i~~~~~~~ 183 (243)
.|...|-++...+.+ ...........+||||+.|-. +.. ....|++.++..
T Consensus 330 ~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t 386 (912)
T TIGR02171 330 NLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNA 386 (912)
T ss_pred eEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhc
Confidence 566666665555544 333333344688999997755 322 234588877764
No 401
>PF12275 DUF3616: Protein of unknown function (DUF3616); InterPro: IPR022060 This family of proteins is found in bacteria. Proteins in this family are typically between 335 and 392 amino acids in length. There is a conserved GLRGPV sequence motif.
Probab=28.99 E-value=1.8e+02 Score=24.18 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=35.6
Q ss_pred ceEEEcCCCCEEEEEEcCCCeEEEEEeecCC----CcceEEecc-C---CCC------CCCceEECCCCCEEEEEecCCc
Q 026118 155 NGVALSEDERFLVVCESWKFRCVKHFLKVSG----RTDREIFID-N---LPG------GPDNVNLARDGSFWISIIKMDP 220 (243)
Q Consensus 155 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~----~~~~~~~~~-~---~~~------~~~~i~~d~~G~lwv~~~~~~~ 220 (243)
.+++..++++ ||++......+.++...... ......+.- . .++ =..|++. .+|.||+.+.....
T Consensus 3 Sa~~~~~d~~-l~va~DE~~~i~rL~~~~~~~~~~~~~~~~~~l~~~~~lp~~~~~e~DiEGla~-~~gyly~igSHS~k 80 (330)
T PF12275_consen 3 SAAVQLPDGR-LWVASDETANIERLTLDDAGGEDRFGDHASFPLADFFDLPGPKDKEIDIEGLAY-ADGYLYVIGSHSRK 80 (330)
T ss_pred ccceEcCCCe-EEEEecCCCCeeEEEecCCCcccccccccccccccccccCCCCCcccchhhhhc-cCCeEEEEccCccC
Confidence 3456667777 88887777777776554322 122122210 0 111 1345777 68899998766543
No 402
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.61 E-value=4.7e+02 Score=24.42 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=14.1
Q ss_pred cccceEEEcCCCCEEEEEEc
Q 026118 152 YFANGVALSEDERFLVVCES 171 (243)
Q Consensus 152 ~~~~gi~~~~dg~~l~v~~~ 171 (243)
..+.+.+|+++++.++..+.
T Consensus 239 ~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 239 DGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred CCceeeeecCCceeeecCch
Confidence 45678899999985555543
No 403
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=27.81 E-value=93 Score=18.75 Aligned_cols=16 Identities=38% Similarity=0.532 Sum_probs=12.9
Q ss_pred ceEEEEeCCCCeeEEe
Q 026118 132 GVLLKYDPSTNQTSLV 147 (243)
Q Consensus 132 g~v~~~~~~~~~~~~~ 147 (243)
-.||+||++++++...
T Consensus 41 iKIfkyd~~tNei~L~ 56 (63)
T PF14157_consen 41 IKIFKYDEDTNEITLK 56 (63)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCCeEEEE
Confidence 3799999999887653
No 404
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=27.75 E-value=6.4e+02 Score=25.39 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=23.5
Q ss_pred cccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118 152 YFANGVALSEDERFLVVCESWKFRCVKHFLK 182 (243)
Q Consensus 152 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 182 (243)
+...++++|+.++|+.+++ .++.+..||+.
T Consensus 1196 G~vTSi~idp~~~WlviGt-s~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGT-SRGQLVLWDLR 1225 (1431)
T ss_pred cceeEEEecCCceEEEEec-CCceEEEEEee
Confidence 4567899999999777764 56788888875
No 405
>PRK10115 protease 2; Provisional
Probab=26.24 E-value=5.4e+02 Score=23.97 Aligned_cols=111 Identities=12% Similarity=0.095 Sum_probs=55.1
Q ss_pred ceEEccCCCEEEEEeCCCc-----EEEEe-cCCcEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCccccccccc
Q 026118 54 GLTTTKENNVIIVCDSQQG-----LLKVS-EEGVTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLV 126 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~~~~g-----l~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~ 126 (243)
++.+++||++|.++....| ++.++ .+|. .+....... -..++..+||+ +|++.....
T Consensus 131 ~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~-~l~~~i~~~----~~~~~w~~D~~~~~y~~~~~~----------- 194 (686)
T PRK10115 131 GMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN-WYPELLDNV----EPSFVWANDSWTFYYVRKHPV----------- 194 (686)
T ss_pred EEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC-CCCccccCc----ceEEEEeeCCCEEEEEEecCC-----------
Confidence 4567788886444332222 55666 4551 111111111 13467777764 666532200
Q ss_pred ccCCCceEEEEeCCCC--eeEEeecccccc--ceEEEcCCCCEEEEEEcC--CCeEEEEEe
Q 026118 127 SGEPHGVLLKYDPSTN--QTSLVLDGLYFA--NGVALSEDERFLVVCESW--KFRCVKHFL 181 (243)
Q Consensus 127 ~~~~~g~v~~~~~~~~--~~~~~~~~~~~~--~gi~~~~dg~~l~v~~~~--~~~i~~~~~ 181 (243)
....-.||+++..++ +-+.+....... -++..+.+++++.+.... ++.++.++.
T Consensus 195 -~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 195 -TLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred -CCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 011246899988877 434443321111 234556688877765432 245666664
No 406
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=26.05 E-value=3.6e+02 Score=21.89 Aligned_cols=32 Identities=16% Similarity=0.082 Sum_probs=22.8
Q ss_pred CcccEEEcCCCcEE-EEeCCCcEEEEccCCcee
Q 026118 11 HPEDVSVDGNGVLY-TATGDGWIKRMHPNGTWE 42 (243)
Q Consensus 11 ~p~~i~~d~~g~l~-~~~~~~~i~~~~~~g~~~ 42 (243)
.-+-+++.+|+.+. .+...|.|..+|..|...
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l 77 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL 77 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccccee
Confidence 34458999999866 455788899988665433
No 407
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=26.04 E-value=4e+02 Score=22.39 Aligned_cols=15 Identities=7% Similarity=0.029 Sum_probs=9.3
Q ss_pred eEECCCCCEEEEEec
Q 026118 203 VNLARDGSFWISIIK 217 (243)
Q Consensus 203 i~~d~~G~lwv~~~~ 217 (243)
.+.--+|.|||....
T Consensus 338 ~av~~~~~iyv~GG~ 352 (376)
T PRK14131 338 VSVSWNNGVLLIGGE 352 (376)
T ss_pred EEEEeCCEEEEEcCC
Confidence 344456778886654
No 408
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=25.92 E-value=3.3e+02 Score=21.35 Aligned_cols=12 Identities=33% Similarity=0.744 Sum_probs=9.1
Q ss_pred cEEEcCCCcEEE
Q 026118 98 DVIEASDGSLYF 109 (243)
Q Consensus 98 ~l~~d~~G~l~v 109 (243)
+++..+||+|+|
T Consensus 264 ~~~~~~dg~l~i 275 (275)
T PF13088_consen 264 SLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEETTEEEE
T ss_pred eeEEeCCCcCCC
Confidence 667778888875
No 409
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=25.89 E-value=4e+02 Score=25.09 Aligned_cols=63 Identities=17% Similarity=0.365 Sum_probs=38.5
Q ss_pred cEEEc----CCC---cEEEEeCCCcEEEEc-cCC---cee----Eec-ccCCccccceEEccCCCEEEEEeCCCcEEEEe
Q 026118 14 DVSVD----GNG---VLYTATGDGWIKRMH-PNG---TWE----DWH-QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (243)
Q Consensus 14 ~i~~d----~~g---~l~~~~~~~~i~~~~-~~g---~~~----~~~-~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~ 77 (243)
.|++| .++ .||++++.|.|+++- ... ... .+. .....|...|.+++....|||+. ..+|.++.
T Consensus 412 ~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~~LyVgs-~~gV~qvp 490 (737)
T KOG3611|consen 412 QIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRGSLYVGS-RSGVVQVP 490 (737)
T ss_pred EEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCCeEEEEc-cCcEEEee
Confidence 46666 344 488999999987665 211 111 111 11124444788887666548887 57888887
No 410
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=25.58 E-value=4.1e+02 Score=22.34 Aligned_cols=53 Identities=19% Similarity=0.130 Sum_probs=34.0
Q ss_pred CCceEEEEeCCCCeeEE-eeccccccceEEEcC--CCCEEEEEEcCCCeEEEEEeec
Q 026118 130 PHGVLLKYDPSTNQTSL-VLDGLYFANGVALSE--DERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 130 ~~g~v~~~~~~~~~~~~-~~~~~~~~~gi~~~~--dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
.++.|-.||+.++..-. +.......|++.|.. ....++.+ ..++.|..||+..
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~-ssDG~Vr~wD~Rs 103 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISC-SSDGTVRLWDIRS 103 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEe-ccCCeEEEEEeec
Confidence 35678889998765433 333345567888866 34434544 5678899998864
No 411
>PF06079 Apyrase: Apyrase; InterPro: IPR009283 This family consists of several eukaryotic apyrase (or adenosine diphosphatase) proteins (3.6.1.5 from EC), and related nucleoside diphosphatases (3.6.1.6 from EC). The salivary apyrases of blood-feeding arthropods are nucleotide hydrolysing enzymes implicated in the inhibition of host platelet aggregation through the hydrolysis of extracellular adenosine diphosphate [].; GO: 0005509 calcium ion binding, 0016462 pyrophosphatase activity; PDB: 2H2N_A 1S18_A 2H2U_A 1S1D_B.
Probab=25.19 E-value=1.2e+02 Score=24.65 Aligned_cols=18 Identities=6% Similarity=-0.110 Sum_probs=8.7
Q ss_pred CCCEEEEEEcCCCeEEEEE
Q 026118 162 DERFLVVCESWKFRCVKHF 180 (243)
Q Consensus 162 dg~~l~v~~~~~~~i~~~~ 180 (243)
+|+ ||..+..++-|+.+.
T Consensus 63 ngk-Lys~DDrTGiVyeI~ 80 (291)
T PF06079_consen 63 NGK-LYSFDDRTGIVYEIK 80 (291)
T ss_dssp TTE-EEEEETTT-EEEEEE
T ss_pred CCE-EeeeeCCCceEEEEe
Confidence 444 555555555555543
No 412
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=24.94 E-value=18 Score=17.03 Aligned_cols=7 Identities=43% Similarity=0.615 Sum_probs=4.6
Q ss_pred EEcCCCC
Q 026118 158 ALSEDER 164 (243)
Q Consensus 158 ~~~~dg~ 164 (243)
.|||+|+
T Consensus 7 ~FSp~Gr 13 (23)
T PF10584_consen 7 TFSPDGR 13 (23)
T ss_dssp SBBTTSS
T ss_pred eECCCCe
Confidence 4667776
No 413
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=24.67 E-value=1.6e+02 Score=24.52 Aligned_cols=11 Identities=36% Similarity=0.613 Sum_probs=7.3
Q ss_pred CceEEEEeCCC
Q 026118 131 HGVLLKYDPST 141 (243)
Q Consensus 131 ~g~v~~~~~~~ 141 (243)
.|.|||+|..+
T Consensus 230 ~GnlwR~dl~~ 240 (335)
T PF05567_consen 230 GGNLWRFDLSS 240 (335)
T ss_dssp TSEEEEEE--T
T ss_pred CCcEEEEECCC
Confidence 47899999874
No 414
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.34 E-value=7.1e+02 Score=24.76 Aligned_cols=152 Identities=9% Similarity=0.055 Sum_probs=74.3
Q ss_pred CcccEEEc-CCCcEEEEe-CCCcEEEEcc-----CCceeEecccCCc--cccceEEccC--CCEEEEEeCCCcEEEEe-c
Q 026118 11 HPEDVSVD-GNGVLYTAT-GDGWIKRMHP-----NGTWEDWHQVGSQ--SLLGLTTTKE--NNVIIVCDSQQGLLKVS-E 78 (243)
Q Consensus 11 ~p~~i~~d-~~g~l~~~~-~~~~i~~~~~-----~g~~~~~~~~~~~--~~~~i~~~~~--g~l~~v~~~~~gl~~~~-~ 78 (243)
.+.++..| ..|.+.++. .+|.|..+|. +..+..+...... .+ .+.+.+. +++ +.+...+.|..+| .
T Consensus 1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv-~~slq~~G~~el-vSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIV-HLSLQRQGLGEL-VSGSQDGDIQLLDLR 1287 (1387)
T ss_pred cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccce-eEEeecCCCcce-eeeccCCeEEEEecc
Confidence 34455555 356777655 8888988882 2223333221111 23 5555443 455 5555555577777 3
Q ss_pred CC-cEEEEeccC-CCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-------c
Q 026118 79 EG-VTVLVSQFN-GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-------D 149 (243)
Q Consensus 79 ~g-~~~~~~~~~-~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-------~ 149 (243)
.. ...+..... -..-....+|.+.++-.++.+.+. ..|-.|+..+..+..+. .
T Consensus 1288 ~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~------------------q~ikIy~~~G~~l~~~k~n~~F~~q 1349 (1387)
T KOG1517|consen 1288 MSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA------------------QLIKIYSLSGEQLNIIKYNPGFMGQ 1349 (1387)
T ss_pred cCcccccceeeeccccCccceeeeeccCCCeeeecCc------------------ceEEEEecChhhhcccccCcccccC
Confidence 31 111111111 000012345666666666666321 24555666532222111 1
Q ss_pred cccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118 150 GLYFANGVALSEDERFLVVCESWKFRCVKHFLKV 183 (243)
Q Consensus 150 ~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 183 (243)
....+..++|+|-.- +..+...++.|..|...+
T Consensus 1350 ~~gs~scL~FHP~~~-llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1350 RIGSVSCLAFHPHRL-LLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred cCCCcceeeecchhH-hhhhccCCceEEEeecCC
Confidence 123446788887554 445556677777776544
No 415
>KOG4328 consensus WD40 protein [Function unknown]
Probab=24.32 E-value=4.9e+02 Score=22.81 Aligned_cols=113 Identities=6% Similarity=-0.077 Sum_probs=58.4
Q ss_pred ccccceEEccCCCEEEEEe-CCCcEEEEec----CC---cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccc
Q 026118 50 QSLLGLTTTKENNVIIVCD-SQQGLLKVSE----EG---VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEY 121 (243)
Q Consensus 50 ~~~~~i~~~~~g~l~~v~~-~~~gl~~~~~----~g---~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~ 121 (243)
.+..+..|+|.|.- .+++ .+..|..|+. .. ...+...-.......+.-.+++|+-++++...
T Consensus 370 rsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~--------- 439 (498)
T KOG4328|consen 370 RSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGR--------- 439 (498)
T ss_pred ceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEec---------
Confidence 34437788987665 3444 3445666663 11 22233222222233455567899877665521
Q ss_pred cccccccCCCceEEEEeCCCCeeEE-eecc--ccccceEEEcCCCCEEEEEEcCCCeEEEEE
Q 026118 122 YLDLVSGEPHGVLLKYDPSTNQTSL-VLDG--LYFANGVALSEDERFLVVCESWKFRCVKHF 180 (243)
Q Consensus 122 ~~~~~~~~~~g~v~~~~~~~~~~~~-~~~~--~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~ 180 (243)
....|-.||..+++.-. +... ...+.=+.++|-+..+..+....+.|+.|.
T Consensus 440 --------~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 440 --------YPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred --------cCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 12247788888666322 1111 123444677787663443434446677664
No 416
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=24.04 E-value=4.1e+02 Score=21.80 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=24.1
Q ss_pred ceEEEEeCCCCeeEEee---ccccccceEEEcCCCCEEEEEEc
Q 026118 132 GVLLKYDPSTNQTSLVL---DGLYFANGVALSEDERFLVVCES 171 (243)
Q Consensus 132 g~v~~~~~~~~~~~~~~---~~~~~~~gi~~~~dg~~l~v~~~ 171 (243)
|.||+-+..+..++.+. .+...++-|+.+.|++++.|+..
T Consensus 148 Gail~T~DgGk~Wk~l~e~~v~~~~~n~ia~s~dng~vaVg~r 190 (339)
T COG4447 148 GAILKTTDGGKNWKALVEKAVGLAVPNEIARSADNGYVAVGAR 190 (339)
T ss_pred ceEEEecCCcccHhHhcccccchhhhhhhhhhccCCeEEEecC
Confidence 45665444333333332 22457888999999987777754
No 417
>PLN02193 nitrile-specifier protein
Probab=23.71 E-value=5e+02 Score=22.72 Aligned_cols=50 Identities=14% Similarity=0.035 Sum_probs=28.6
Q ss_pred ceEEEEeCCCCeeEEeeccc--ccc---ceEEEcCCCCEEEEEEcC-----CCeEEEEEeec
Q 026118 132 GVLLKYDPSTNQTSLVLDGL--YFA---NGVALSEDERFLVVCESW-----KFRCVKHFLKV 183 (243)
Q Consensus 132 g~v~~~~~~~~~~~~~~~~~--~~~---~gi~~~~dg~~l~v~~~~-----~~~i~~~~~~~ 183 (243)
..+++||+.+.+++.+.... ..| ..++. -+++ ||+..-. ...+++||+..
T Consensus 244 ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~-iYv~GG~~~~~~~~~~~~yd~~t 303 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEEN-VYVFGGVSATARLKTLDSYNIVD 303 (470)
T ss_pred ccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCE-EEEECCCCCCCCcceEEEEECCC
Confidence 46999999988887764321 111 23333 2444 8876322 13467777654
No 418
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.16 E-value=4.3e+02 Score=21.83 Aligned_cols=70 Identities=11% Similarity=0.153 Sum_probs=40.3
Q ss_pred ceEEccCCCEEEEEeCCC----cEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccc
Q 026118 54 GLTTTKENNVIIVCDSQQ----GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVS 127 (243)
Q Consensus 54 ~i~~~~~g~l~~v~~~~~----gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~ 127 (243)
.|..||-.+.|+++-.++ ||+.++ .+| .+.+...+... +..+. | ..+++... |
T Consensus 110 dIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~K------G~~~~-D-~a~F~i~~--~----------- 168 (339)
T PF09910_consen 110 DILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSLK------GTLVH-D-YACFGINN--F----------- 168 (339)
T ss_pred heeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCcC------ceEee-e-eEEEeccc--c-----------
Confidence 688888666557876543 699999 677 66665433221 22221 1 23444211 0
Q ss_pred cCCCceEEEEeCCCCee
Q 026118 128 GEPHGVLLKYDPSTNQT 144 (243)
Q Consensus 128 ~~~~g~v~~~~~~~~~~ 144 (243)
.....+|.++|..+++.
T Consensus 169 ~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 169 HKGVSGIHCLDLISGKW 185 (339)
T ss_pred ccCCceEEEEEccCCeE
Confidence 11234789999998887
No 419
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=22.63 E-value=6.6e+02 Score=23.74 Aligned_cols=66 Identities=12% Similarity=0.027 Sum_probs=35.9
Q ss_pred cccceEEEcCCCCEEEEEEc--------CCCeEEEEEeecCCCcceEEeccCCCCC---CC--ceEECCCCCEEEEEec
Q 026118 152 YFANGVALSEDERFLVVCES--------WKFRCVKHFLKVSGRTDREIFIDNLPGG---PD--NVNLARDGSFWISIIK 217 (243)
Q Consensus 152 ~~~~gi~~~~dg~~l~v~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~--~i~~d~~G~lwv~~~~ 217 (243)
....|+.++++|..|-|+.. ..+.|..|.+-+.-.+..++-.....+. .. -|++..++-||++.-.
T Consensus 259 m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIR 337 (1189)
T KOG2041|consen 259 MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIR 337 (1189)
T ss_pred cEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeec
Confidence 34467888899987777643 2245666665554333333321111110 11 2666777788887643
No 420
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=22.31 E-value=3.3e+02 Score=21.78 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=30.4
Q ss_pred cEEEEeCCCcEEEEccCCc-eeEecccCCccccce----EEc-cCCCEEEEEeCCCcEEEE
Q 026118 22 VLYTATGDGWIKRMHPNGT-WEDWHQVGSQSLLGL----TTT-KENNVIIVCDSQQGLLKV 76 (243)
Q Consensus 22 ~l~~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~~i----~~~-~~g~l~~v~~~~~gl~~~ 76 (243)
-|.+|++.+.|+.+|+.+- +..-...+.-|. .| .+| -|.++ +|+..++.|+.+
T Consensus 197 cLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI-~Va~Rdg~iy~i 255 (257)
T PF14779_consen 197 CLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRI-VVACRDGKIYTI 255 (257)
T ss_pred eEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEE-EEEeCCCEEEEE
Confidence 5889999999999996542 221111112232 22 243 56666 777765566654
No 421
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=22.30 E-value=1.4e+02 Score=15.90 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=14.6
Q ss_pred CCceEEEEeCCCCeeEEee
Q 026118 130 PHGVLLKYDPSTNQTSLVL 148 (243)
Q Consensus 130 ~~g~v~~~~~~~~~~~~~~ 148 (243)
....+++||+.+.+++.+.
T Consensus 26 ~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 26 PTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp BEEEEEEEETTTTEEEEEE
T ss_pred eeeeEEEEeCCCCEEEEcC
Confidence 3457999999988887653
No 422
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.22 E-value=3.2e+02 Score=23.54 Aligned_cols=64 Identities=16% Similarity=0.073 Sum_probs=37.6
Q ss_pred cccEEEcC--CCcEEEEeCCCcEEEEcc--CCceeEecccCCccccceEEccC-CCEEEEEeCCCcEEEEe
Q 026118 12 PEDVSVDG--NGVLYTATGDGWIKRMHP--NGTWEDWHQVGSQSLLGLTTTKE-NNVIIVCDSQQGLLKVS 77 (243)
Q Consensus 12 p~~i~~d~--~g~l~~~~~~~~i~~~~~--~g~~~~~~~~~~~~~~~i~~~~~-g~l~~v~~~~~gl~~~~ 77 (243)
-.+|++.+ +|.|-++.-+..|-.+|. .-.+..+.. .++.++..+|.| -+.+|.+...+.|+.||
T Consensus 196 IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a--~~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 196 IRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA--YNQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhhhccCccccceeeeeccCceEEEEecccceeeeheec--cCCceeeeeccCCcceeEEeccCceEEEEE
Confidence 34566665 444556666666777762 223333333 233337888754 34558888777788998
No 423
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=21.70 E-value=4.6e+02 Score=21.60 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=15.8
Q ss_pred cccEEEcCCC-cEEEEe-CCCcEEEEc
Q 026118 12 PEDVSVDGNG-VLYTAT-GDGWIKRMH 36 (243)
Q Consensus 12 p~~i~~d~~g-~l~~~~-~~~~i~~~~ 36 (243)
-..|++..++ .+|.+. .+|.++.||
T Consensus 199 V~DIaf~~~s~~~FASvgaDGSvRmFD 225 (364)
T KOG0290|consen 199 VYDIAFLKGSRDVFASVGADGSVRMFD 225 (364)
T ss_pred eeEEEeccCccceEEEecCCCcEEEEE
Confidence 3456666655 466554 677788887
No 424
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=21.55 E-value=4.9e+02 Score=21.87 Aligned_cols=61 Identities=13% Similarity=0.151 Sum_probs=36.4
Q ss_pred CccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC
Q 026118 96 ANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW 172 (243)
Q Consensus 96 ~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~ 172 (243)
...+..+|||+-...++. | ..+-.||.++...+-. +........|++|++||++.-+.+..
T Consensus 94 ls~~~WSPdgrhiL~tse--F------------~lriTVWSL~t~~~~~--~~~pK~~~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 94 LSSISWSPDGRHILLTSE--F------------DLRITVWSLNTQKGYL--LPHPKTNVKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred ceeeeECCCcceEeeeec--c------------eeEEEEEEeccceeEE--ecccccCceeEEECCCCceeeeeecc
Confidence 445688999975555443 1 1223566666553332 22223344799999999977777543
No 425
>PF15533 Toxin_54: Putative toxin 54
Probab=20.97 E-value=84 Score=19.06 Aligned_cols=15 Identities=20% Similarity=0.421 Sum_probs=12.1
Q ss_pred CceEECCCCCEEEEE
Q 026118 201 DNVNLARDGSFWISI 215 (243)
Q Consensus 201 ~~i~~d~~G~lwv~~ 215 (243)
..|..|.+|+||+=-
T Consensus 37 yDlykD~~gni~ik~ 51 (66)
T PF15533_consen 37 YDLYKDREGNIYIKP 51 (66)
T ss_pred ceeEEcCCCCEEEec
Confidence 458889999999954
No 426
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=20.53 E-value=6.9e+02 Score=23.18 Aligned_cols=73 Identities=16% Similarity=0.054 Sum_probs=41.3
Q ss_pred CCccEEEcCCCcEE--EEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecccc-ccceEEEcCCCCEEEEEEc
Q 026118 95 FANDVIEASDGSLY--FTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLY-FANGVALSEDERFLVVCES 171 (243)
Q Consensus 95 ~~~~l~~d~~G~l~--v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~-~~~gi~~~~dg~~l~v~~~ 171 (243)
...++.+++|+++. ..|.. +...-.|-..|..+|+... .... ...+.++.+|++++|.+..
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~--------------G~e~y~lr~kdL~tg~~~~--d~i~~~~~~~~Wa~d~~~lfYt~~ 193 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVL--------------GDEQYTLRFKDLATGEELP--DEITNTSGSFAWAADGKTLFYTRL 193 (682)
T ss_pred eeeeeeeCCCCceEEEEEecc--------------cccEEEEEEEecccccccc--hhhcccccceEEecCCCeEEEEEE
Confidence 44567788888743 33321 1122245566777665432 2222 2456899999998887754
Q ss_pred CC----CeEEEEEeec
Q 026118 172 WK----FRCVKHFLKV 183 (243)
Q Consensus 172 ~~----~~i~~~~~~~ 183 (243)
.. ..|++..+.+
T Consensus 194 d~~~rp~kv~~h~~gt 209 (682)
T COG1770 194 DENHRPDKVWRHRLGT 209 (682)
T ss_pred cCCCCcceEEEEecCC
Confidence 32 3566655544
No 427
>PF11161 DUF2944: Protein of unknown function (DUF2946); InterPro: IPR021332 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=20.27 E-value=3.9e+02 Score=20.20 Aligned_cols=51 Identities=10% Similarity=0.011 Sum_probs=28.8
Q ss_pred EEEEEcCCCeEEEEEeecCCCcceEEeccCCC-CCCCceEECCCCCEEEEEecC
Q 026118 166 LVVCESWKFRCVKHFLKVSGRTDREIFIDNLP-GGPDNVNLARDGSFWISIIKM 218 (243)
Q Consensus 166 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~lwv~~~~~ 218 (243)
+||.-...-.|+|....+.... ... ..+.+ ..+....+|.+|+||+.+..+
T Consensus 77 VYV~Le~tP~v~Rl~~~~~~~~-l~t-hTg~~~~~~~~~~lDe~G~l~l~t~~g 128 (187)
T PF11161_consen 77 VYVELEYTPWVWRLQPEGGDLG-LVT-HTGAPFEAPRACWLDEQGRLYLATPLG 128 (187)
T ss_pred EEEEeccCceEEEeccCCCCCc-eee-cCCCcccchhheeECCCCCEEEecCCc
Confidence 6666656666777665321111 110 01111 236778899999999986544
No 428
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.24 E-value=5e+02 Score=21.47 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=39.9
Q ss_pred CCcEEEEe-cCC-cEEEE-eccCCCc--ccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe
Q 026118 70 QQGLLKVS-EEG-VTVLV-SQFNGSQ--LRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ 143 (243)
Q Consensus 70 ~~gl~~~~-~~g-~~~~~-~~~~~~~--~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~ 143 (243)
...|..+| .++ ++.+- ....... ...+.+|..|| +.+|+++-.. +-.+-+||++|..+|+
T Consensus 77 YSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~D--------------Gh~nLGvy~ldr~~g~ 142 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARAD--------------GHANLGVYSLDRRTGK 142 (339)
T ss_pred cceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecC--------------CcceeeeEEEcccCCc
Confidence 35688888 666 55442 2222111 12456788888 5678887322 1123479999999998
Q ss_pred eEEeec
Q 026118 144 TSLVLD 149 (243)
Q Consensus 144 ~~~~~~ 149 (243)
.+.+..
T Consensus 143 ~~~L~~ 148 (339)
T PF09910_consen 143 AEKLSS 148 (339)
T ss_pred eeeccC
Confidence 887653
No 429
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=20.10 E-value=8.2e+02 Score=23.87 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=33.3
Q ss_pred cEEEEeCCCcEEEE----ccC-CceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe
Q 026118 22 VLYTATGDGWIKRM----HPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (243)
Q Consensus 22 ~l~~~~~~~~i~~~----~~~-g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~ 77 (243)
.|.++..+|.|..+ +++ ..+........... +++.+||+.+|.+++..+.++...
T Consensus 89 ~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~-a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 89 SLCIALASGDIILVREDPDPDEDEIEIVGSVDSGIL-AASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred cEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEE-EEEECCCcCEEEEEeCCCEEEEEe
Confidence 57777777888777 432 23333222223334 678899999877777555555543
Done!