BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026119
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VQW|A Chain A, Crystal Structure Of The Semet Substituted Catalytic
Domain Of Pyrrolysyl-Trna Synthetase
Length = 291
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 110 DPLRLNITSPLTE-DLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLM 168
D + LN P E + + L R+ Q ++ E+R Y+G R I+ ++V +
Sbjct: 43 DEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYLGKLEREITR-----FFVDRGFL 97
Query: 169 PIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSR 201
I KSP+L+ ++ R D +E+S+
Sbjct: 98 EI-------KSPILIPLEYIERXGIDNDTELSK 123
>pdb|2Q7E|A Chain A, The Structure Of Pyrrolysyl-trna Synthetase Bound To An
Atp Analogue
pdb|2Q7G|A Chain A, Pyrrolysine Trna Synthetase Bound To A Pyrrolysine
Analogue (Cyc) And Atp
pdb|2Q7H|A Chain A, Pyrrolysyl-Trna Synthetase Bound To Adenylated Pyrrolysine
And Pyrophosphate
pdb|2ZIM|A Chain A, Pyrrolysyl-Trna Synthetase Bound To Adenylated Pyrrolysine
And Pyrophosphate
Length = 291
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 110 DPLRLNITSPLTE-DLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLM 168
D + LN P E + + L R+ Q ++ E+R Y+G R I+ ++V +
Sbjct: 43 DEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYLGKLEREITR-----FFVDRGFL 97
Query: 169 PIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSR 201
I KSP+L+ ++ R D +E+S+
Sbjct: 98 EI-------KSPILIPLEYIERMGIDNDTELSK 123
>pdb|2E3C|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase
pdb|2ZCE|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Pyrrolysine And An Atp
Analogue
pdb|2ZIN|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Boclys And An Atp
Analogue
pdb|2ZIO|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Aloclys-Amp And Pnp
pdb|3VQV|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Complex With Amppnp
(Re-Refined)
pdb|3VQX|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|B Chain B, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|C Chain C, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|D Chain D, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQY|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Complex With Boclys And
Amppnp (Form 2)
Length = 291
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 110 DPLRLNITSPLTE-DLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLM 168
D + LN P E + + L R+ Q ++ E+R Y+G R I+ ++V +
Sbjct: 43 DEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYLGKLEREITR-----FFVDRGFL 97
Query: 169 PIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSR 201
I KSP+L+ ++ R D +E+S+
Sbjct: 98 EI-------KSPILIPLEYIERMGIDNDTELSK 123
>pdb|3QTC|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmomers, An
O-Methyl Tyrosyl-Trna Synthetase Evolved From
Methanosarcina Mazei Pylrs, Complexed With O-Methyl
Tyrosine And Amp-Pnp
Length = 290
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 110 DPLRLNITSPLTE-DLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLM 168
D + LN P E + + L R+ Q ++ E+R Y+G R I+ ++V +
Sbjct: 42 DEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYLGKLEREITR-----FFVDRGFL 96
Query: 169 PIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSR 201
I KSP+L+ ++ R D +E+S+
Sbjct: 97 EI-------KSPILIPLEYIERMGIDNDTELSK 122
>pdb|2Z24|A Chain A, Thr110ser Dihydroorotase From E. Coli
pdb|2Z24|B Chain B, Thr110ser Dihydroorotase From E. Coli
Length = 347
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 100 LEYRQNRLQMDPLRLN----ITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISG 155
+ YRQ L P + +T LT+ L E R +GVF S S G
Sbjct: 56 VAYRQRILDAVPAGHDFTPLMTCYLTDSLDPNELERGFNEGVFTAAXLYPANATSNSSHG 115
Query: 156 VTENGYYVITPLMPIPNNPQSVKSPVLVN 184
VT + +MP+ + + P+LV+
Sbjct: 116 VTS-----VDAIMPVLERMEKIGMPLLVH 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,123,776
Number of Sequences: 62578
Number of extensions: 211020
Number of successful extensions: 438
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 5
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)