Query 026119
Match_columns 243
No_of_seqs 169 out of 982
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:00:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026119.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026119hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1563 Mitochondrial protein 100.0 1.4E-39 3.1E-44 288.4 15.8 164 69-242 57-233 (288)
2 COG3346 Uncharacterized conser 100.0 1.3E-38 2.8E-43 283.3 16.3 154 73-238 18-183 (252)
3 PF02104 SURF1: SURF1 family; 100.0 8.4E-35 1.8E-39 252.4 15.6 155 76-242 2-174 (212)
4 cd06662 SURF1 SURF1 superfamil 100.0 2.7E-31 5.8E-36 227.8 14.7 144 82-239 1-156 (202)
5 COG4578 GutM Glucitol operon a 87.8 0.41 8.9E-06 39.2 2.4 34 68-101 8-41 (128)
6 PF12273 RCR: Chitin synthesis 59.8 5 0.00011 32.3 1.3 25 69-93 1-25 (130)
7 PF10883 DUF2681: Protein of u 52.2 25 0.00054 27.0 3.9 19 78-96 13-31 (87)
8 PF11293 DUF3094: Protein of u 49.1 24 0.00052 24.8 3.1 27 65-91 26-52 (55)
9 PF14981 FAM165: FAM165 family 39.5 1E+02 0.0022 21.1 4.9 26 79-104 21-46 (51)
10 PF04375 HemX: HemX; InterPro 38.3 1.2E+02 0.0026 28.8 7.1 10 81-90 41-50 (372)
11 PF06724 DUF1206: Domain of Un 37.5 41 0.0009 24.1 3.1 28 66-96 44-71 (73)
12 KOG1691 emp24/gp25L/p24 family 36.4 22 0.00047 31.6 1.7 29 72-100 179-210 (210)
13 COG3768 Predicted membrane pro 34.3 73 0.0016 30.2 4.8 56 30-88 20-82 (350)
14 PTZ00370 STEVOR; Provisional 32.4 47 0.001 30.9 3.2 37 62-98 251-289 (296)
15 PF06864 PAP_PilO: Pilin acces 29.9 84 0.0018 30.1 4.7 20 84-103 180-199 (414)
16 PRK10234 DNA-binding transcrip 29.9 94 0.002 25.1 4.2 21 78-98 12-32 (118)
17 PF04995 CcmD: Heme exporter p 29.1 1.3E+02 0.0028 19.8 4.2 9 83-91 22-30 (46)
18 PF07125 DUF1378: Protein of u 28.4 1.9E+02 0.0042 20.4 5.0 38 72-109 9-46 (59)
19 PRK06975 bifunctional uroporph 28.2 1.8E+02 0.004 29.8 7.0 18 71-88 325-342 (656)
20 PRK10370 formate-dependent nit 28.1 1.5E+02 0.0032 25.3 5.5 7 83-89 27-33 (198)
21 TIGR01478 STEVOR variant surfa 26.2 49 0.0011 30.8 2.2 36 62-97 255-292 (295)
22 PF10828 DUF2570: Protein of u 26.0 1.6E+02 0.0034 23.0 4.8 8 69-76 3-10 (110)
23 PF06923 GutM: Glucitol operon 25.9 1.2E+02 0.0026 23.9 4.2 25 74-98 7-31 (109)
24 KOG1228 Uncharacterized conser 25.5 75 0.0016 28.6 3.1 75 90-169 5-84 (256)
25 PF14316 DUF4381: Domain of un 24.3 1.1E+02 0.0023 25.0 3.7 11 95-105 50-60 (146)
26 KOG3835 Transcriptional corepr 23.5 59 0.0013 31.6 2.3 26 84-109 8-33 (495)
27 KOG4112 Signal peptidase subun 23.4 30 0.00066 27.1 0.3 28 8-35 45-72 (101)
28 PF11743 DUF3301: Protein of u 23.4 1.3E+02 0.0028 23.1 3.8 24 80-103 8-31 (97)
29 PHA00276 phage lambda Rz-like 23.1 1E+02 0.0022 25.8 3.3 34 77-110 11-47 (144)
30 PF04904 NCD1: NAB conserved r 22.8 79 0.0017 23.9 2.4 27 84-110 6-32 (82)
31 COG2149 Predicted membrane pro 22.4 1.2E+02 0.0025 24.7 3.4 25 73-97 61-85 (120)
No 1
>KOG1563 consensus Mitochondrial protein Surfeit 1/SURF1/SHY1, required for expression of cytochrome oxidase [Energy production and conversion]
Probab=100.00 E-value=1.4e-39 Score=288.42 Aligned_cols=164 Identities=34% Similarity=0.652 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCccceEEEEEEEEeCCceEEEcc
Q 026119 69 TWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGP 148 (243)
Q Consensus 69 ~~~~l~l~i~~~v~~~LG~WQl~R~~wK~~Li~~ie~r~~a~Pv~l~~~~~~~~~~~~~eyrrV~v~G~f~~~~~~lv~~ 148 (243)
+++.++++++.++.|+||+||+.|++||.+||+.+++++.++|++||+... +.+++|||||.++|.|+|+++++|+|
T Consensus 57 k~l~~ll~liPittFgLGtWQvkRlkWK~~lI~~l~~rL~~~pi~LP~~~~---~l~~lEyrrV~~rG~F~H~kEm~vgP 133 (288)
T KOG1563|consen 57 KFLAWLLLLIPITTFGLGTWQVKRLKWKLELIASLKQRLEQEPIPLPKDLD---DLEGLEYRRVKLRGIFLHDKEMYVGP 133 (288)
T ss_pred chHHHHHHHhhhheeeccceeehhHHHHHHHHHHHHhhhcCCCccCCCChh---HhcccceEEEEEEEEEcccceEEecc
Confidence 345556777778999999999999999999999999999999999998763 57899999999999999999999999
Q ss_pred ccccCCCCCcccEEEEeeeeecCCCCCCCCceEEEeeccccCCCCCCCcc--CCCCcccc---------cCCC--CCCCC
Q 026119 149 RSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSE--VSRDSEQP---------LNLA--PSVQQ 215 (243)
Q Consensus 149 R~~~~~g~~~~Gy~VltP~~~~~g~~~~~~~~VLVNRGWVp~~~~~~~~~--~~~~~g~v---------~~~~--~p~~d 215 (243)
|.+......+.||+|+|||.++|. +..|||||||||...-++..+ ..+++|.| +..+ ++.|.
T Consensus 134 R~r~~~~g~~~Gy~vvTPF~~~d~-----g~~ILVNRGWvp~~~v~petR~~~~~~~~~v~l~gvVRk~e~r~~f~~~n~ 208 (288)
T KOG1563|consen 134 RTRSGPKGSEIGYYVVTPFILDDN-----GSIILVNRGWVPRKKVEPETRYPSGQPEGHVELVGVVRKTETRPQFTPVNK 208 (288)
T ss_pred ccccCCCCcccceEEeeeeEECCC-----CCEEEEecCccchhhcCcccccccCCccceEEEEEEEecCCCCCCcccccC
Confidence 998644334568999999999874 369999999999987766543 34555554 2223 88999
Q ss_pred cCCCceeeeecCHHHHHHHhCCCCccc
Q 026119 216 SQQSSWWWFWLKKPNIVEVLYCDPMMF 242 (243)
Q Consensus 216 p~~~~w~~~~~D~~amA~~lg~~P~~v 242 (243)
|+.|.|| |+|+++||++.|++|++|
T Consensus 209 pe~~~w~--y~Dl~~mA~~~G~~Pi~i 233 (288)
T KOG1563|consen 209 PESNVWY--YRDLPKMARATGTEPILI 233 (288)
T ss_pred Cccccee--ecCHHHHHHHcCCCceEe
Confidence 9999999 999999999999999986
No 2
>COG3346 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.3e-38 Score=283.30 Aligned_cols=154 Identities=26% Similarity=0.408 Sum_probs=131.7
Q ss_pred HHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCccceEEEEEEEEeCCceEEEcccccc
Q 026119 73 WLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRS 152 (243)
Q Consensus 73 l~l~i~~~v~~~LG~WQl~R~~wK~~Li~~ie~r~~a~Pv~l~~~~~~~~~~~~~eyrrV~v~G~f~~~~~~lv~~R~~~ 152 (243)
+++++.++++++||+||++|++||.++|+++|+++++||+++++........+++|||+|+++|+|+|++++++++|..
T Consensus 18 ~l~~~~~~il~~LGtWQl~Rl~wK~~lia~ie~r~~appv~l~~~~~~~~~~~~~eyrrV~ltG~fl~~~e~l~~~r~~- 96 (252)
T COG3346 18 LLVLATFAILLGLGTWQLQRLHWKLALIARIEARLHAPPVPLPKLLDWADSGADLEYRRVTLTGTFLHDKEVLLYARVT- 96 (252)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhcCCCCCcccccchhhcCcccceEEEEEEEEEcCCceEEEeeeee-
Confidence 4555666788999999999999999999999999999999999987643333448999999999999999999999976
Q ss_pred CCCCCcccEEEEeeeeecCCCCCCCCceEEEeeccccCCCCCCCccC-CCCcccccCC---------C--CCCCCcCCCc
Q 026119 153 ISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEV-SRDSEQPLNL---------A--PSVQQSQQSS 220 (243)
Q Consensus 153 ~~g~~~~Gy~VltP~~~~~g~~~~~~~~VLVNRGWVp~~~~~~~~~~-~~~~g~v~~~---------~--~p~~dp~~~~ 220 (243)
++ ++||||+|||.+++| +.|||||||||.+.++..++. .++.|++..+ + .+.||+.+|.
T Consensus 97 -~g--~~Gy~VlTPf~~~dG------~~VLVnRG~vp~e~~~~~~r~~~~~~g~v~I~Gl~r~~e~~~~~l~~nd~~~~~ 167 (252)
T COG3346 97 -EG--GPGYEVLTPFALDDG------RTVLVNRGFVPRERKEASPRAEGQPAGPVTITGLLRPPEPGGSLLPDNDPGKNL 167 (252)
T ss_pred -cC--CccEEEecccEecCC------cEEEEeCCcccCcccCCCCCCCCCCCCcEEEEEEEecCCCccccCcccCcccCe
Confidence 34 899999999999876 799999999999999987753 5555665332 2 7778999999
Q ss_pred eeeeecCHHHHHHHhCCC
Q 026119 221 WWWFWLKKPNIVEVLYCD 238 (243)
Q Consensus 221 w~~~~~D~~amA~~lg~~ 238 (243)
|| ++|+++||+..|+.
T Consensus 168 ~y--~~d~~~~A~~~gl~ 183 (252)
T COG3346 168 WY--SIDLAAFAQATGLP 183 (252)
T ss_pred ee--eccHHHHHhhcCCC
Confidence 99 99999999999985
No 3
>PF02104 SURF1: SURF1 family; InterPro: IPR002994 The surfeit locus 1 gene (SURF1 or surf-1) encodes a conserved protein of about 300 amino-acid residues that seems to be involved in the biogenesis of cytochrome c oxidase []. Vertebrate SURF1 is evolutionary related to yeast protein SHY1. There seems to be two transmembrane regions in these proteins, one in the N-terminal, the other in the C-terminal. Rickettsia prowazekii protein RP733 is also a member of this protein family.; GO: 0016020 membrane
Probab=100.00 E-value=8.4e-35 Score=252.45 Aligned_cols=155 Identities=30% Similarity=0.463 Sum_probs=127.6
Q ss_pred HHHHHHHhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCccceEEEEEEEEeCCceEEEccccccCCC
Q 026119 76 FLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISG 155 (243)
Q Consensus 76 ~i~~~v~~~LG~WQl~R~~wK~~Li~~ie~r~~a~Pv~l~~~~~~~~~~~~~eyrrV~v~G~f~~~~~~lv~~R~~~~~g 155 (243)
++++++|++||+||++|++||+++|++++++.+++|++|++....+...++.+||+|+++|+|+++++++|+||.++ |
T Consensus 2 l~~~~~~~~LG~WQl~R~~~K~~l~~~~~~~~~~~pv~l~~~~~~~~~~~~~~~r~V~~~G~~~~~~~~ll~~r~~~--g 79 (212)
T PF02104_consen 2 LLAIALLVGLGFWQLDRAQWKQALIARIEARLSAPPVPLPDLLDPDALPEDLEYRRVTVSGRFDPEKQILLDNRSRD--G 79 (212)
T ss_pred ChHHHHHHHHCHHHhCHHHHHHHHHHHHHHHhhCCCcCCccccccccCccccCceEEEEEEEECCCceEEEeccccC--C
Confidence 35667899999999999999999999999999999999998763223456899999999999999999999999873 4
Q ss_pred CCcccEEEEeeeeecCCCCCCCCceEEEeeccccCCCCCCC--cc--CCCCcccccCCC------------CCCCCcCCC
Q 026119 156 VTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKS--SE--VSRDSEQPLNLA------------PSVQQSQQS 219 (243)
Q Consensus 156 ~~~~Gy~VltP~~~~~g~~~~~~~~VLVNRGWVp~~~~~~~--~~--~~~~~g~v~~~~------------~p~~dp~~~ 219 (243)
+.||+|+|||++++| ..|||||||||.+..++. +. +..+.|+++.++ .++|+++.+
T Consensus 80 --~~Gy~Vltp~~~~dg------~~vlVnRGWvp~~~~~~~~~p~~~p~~~~g~~~v~G~l~~~~~~~~~~~~~~~~~~~ 151 (212)
T PF02104_consen 80 --RPGYHVLTPFRLDDG------RAVLVNRGWVPAEAADRAALPEQVPAPPSGEVTVTGRLRPPEPRGGIFTPENDPEPN 151 (212)
T ss_pred --CceEEEEEEEEecCC------cEEEEEecccccccCCcccccccccCCCCceEEEEEEEECCCCcCCcCccCCCCCCc
Confidence 899999999999865 699999999999855543 32 112245442221 456788899
Q ss_pred ceeeeecCHHHHHHHhC--CCCccc
Q 026119 220 SWWWFWLKKPNIVEVLY--CDPMMF 242 (243)
Q Consensus 220 ~w~~~~~D~~amA~~lg--~~P~~v 242 (243)
.|+ ++|+++|++.+| +.|++|
T Consensus 152 ~~~--~~d~~~~a~~~g~~~~p~~l 174 (212)
T PF02104_consen 152 RWQ--SIDLEAMAQALGLPLAPFYL 174 (212)
T ss_pred eEE--ecCHHHHHHHhCCCCCCeEE
Confidence 999 999999999999 688876
No 4
>cd06662 SURF1 SURF1 superfamily. Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring complex of the respiratory chain, is an assemblage of nuclear and mitochondrially-encoded subunits. Its assembly is mediated by nuclear encoded assembly factors, one of which is Surf1/Shy1. Mutations in human Surf1 are a major cause of Leigh syndrome, a severe neurodegenerative disorder.
Probab=99.97 E-value=2.7e-31 Score=227.82 Aligned_cols=144 Identities=27% Similarity=0.415 Sum_probs=119.3
Q ss_pred HhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCccceEEEEEEEEeCCceEEEccccccCCCCCcccE
Q 026119 82 SFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGY 161 (243)
Q Consensus 82 ~~~LG~WQl~R~~wK~~Li~~ie~r~~a~Pv~l~~~~~~~~~~~~~eyrrV~v~G~f~~~~~~lv~~R~~~~~g~~~~Gy 161 (243)
|++||+||++|++||+++|++++++.+++|+++++..... .++.+||+|+++|+|+++++++++||.++ | +.||
T Consensus 1 ~~~LG~WQl~R~~~K~~l~~~~~~~~~~~pv~l~~~~~~~--~~~~~~r~V~v~G~~~~~~~~ll~~r~~~--g--~~Gy 74 (202)
T cd06662 1 LVGLGFWQLQRAEWKEALIARIEARLAAPPVPLPELLAPP--LEDLEYRRVTVTGTFLPEKEVLLDNRTRD--G--RPGY 74 (202)
T ss_pred CccccHHHHhHHHHHHHHHHHHHHHhcCCCCCCCcccccc--ccccceEEEEEEEEECCCCEEEEeccccC--C--CCce
Confidence 6799999999999999999999999999999999876421 56789999999999999999999999873 4 8999
Q ss_pred EEEeeeeecCCCCCCCCceEEEeeccccCCCCCCCc-cCCCCcccccCC---------C--CCCCCcCCCceeeeecCHH
Q 026119 162 YVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSS-EVSRDSEQPLNL---------A--PSVQQSQQSSWWWFWLKKP 229 (243)
Q Consensus 162 ~VltP~~~~~g~~~~~~~~VLVNRGWVp~~~~~~~~-~~~~~~g~v~~~---------~--~p~~dp~~~~w~~~~~D~~ 229 (243)
+|++||++++| ..|||||||||.+.++... ....+.|++... + .+.++.+.+.|+ ++|++
T Consensus 75 ~vl~p~~~~~g------~~ilVnrGwv~~~~~~~~~~~~~~p~g~~~v~G~l~~~~~~~~~~~~~~~~~~~~~--~~d~~ 146 (202)
T cd06662 75 EVLTPFRLDDG------RTVLVNRGWVPADADRPALPAVAPPTGEVTVTGRLRPPEPRGLFLPPNDPAANPWQ--NRDLE 146 (202)
T ss_pred EEEeeeEECCC------CEEEEECCCCCCCccCcccCCCCCCCccEEEEEEEecCCCCCCcCCCCCccccccc--ccCHH
Confidence 99999999765 5899999999998766643 223445544222 1 455667777888 99999
Q ss_pred HHHHHhCCCC
Q 026119 230 NIVEVLYCDP 239 (243)
Q Consensus 230 amA~~lg~~P 239 (243)
+|++.+|..+
T Consensus 147 ~~~~~~~~~~ 156 (202)
T cd06662 147 AMAQALGLPL 156 (202)
T ss_pred HHHHHHCCCC
Confidence 9999999843
No 5
>COG4578 GutM Glucitol operon activator [Transcription]
Probab=87.78 E-value=0.41 Score=39.18 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHH
Q 026119 68 STWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLE 101 (243)
Q Consensus 68 ~~~~~l~l~i~~~v~~~LG~WQl~R~~wK~~Li~ 101 (243)
..|++.+++++.+.++.||-||+.|.+.--.-+.
T Consensus 8 ~~~lI~~~vi~w~~q~algwwQ~srfq~af~t~~ 41 (128)
T COG4578 8 WPALIALAVIAWCAQLALGWWQWSRFQSAFGTFQ 41 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 3555556666777889999999999987655443
No 6
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=59.83 E-value=5 Score=32.31 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhhH
Q 026119 69 TWSKWLLFLPGAISFGLGTWQIFRR 93 (243)
Q Consensus 69 ~~~~l~l~i~~~v~~~LG~WQl~R~ 93 (243)
+|.+++++|++++++.+++.-..|+
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~rR 25 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNRR 25 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 3555544444444444444444433
No 7
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=52.24 E-value=25 Score=26.99 Aligned_cols=19 Identities=11% Similarity=0.247 Sum_probs=13.9
Q ss_pred HHHHHhhcchhhhhhHHHH
Q 026119 78 PGAISFGLGTWQIFRRQDK 96 (243)
Q Consensus 78 ~~~v~~~LG~WQl~R~~wK 96 (243)
+++++++...||+.+++..
T Consensus 13 v~~~i~~y~~~k~~ka~~~ 31 (87)
T PF10883_consen 13 VVALILAYLWWKVKKAKKQ 31 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344567778999988877
No 8
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=49.13 E-value=24 Score=24.81 Aligned_cols=27 Identities=19% Similarity=0.382 Sum_probs=15.4
Q ss_pred CCCchHHHHHHHHHHHHHhhcchhhhh
Q 026119 65 APSSTWSKWLLFLPGAISFGLGTWQIF 91 (243)
Q Consensus 65 ~~~~~~~~l~l~i~~~v~~~LG~WQl~ 91 (243)
.++++|.++++++++++.++|=.|=+.
T Consensus 26 ~PFrP~~Ll~~li~Vv~gl~llS~ll~ 52 (55)
T PF11293_consen 26 KPFRPWRLLIVLIVVVIGLGLLSRLLS 52 (55)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788776666665554444444333
No 9
>PF14981 FAM165: FAM165 family
Probab=39.53 E-value=1e+02 Score=21.07 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=18.1
Q ss_pred HHHHhhcchhhhhhHHHHHHHHHHHH
Q 026119 79 GAISFGLGTWQIFRRQDKIKMLEYRQ 104 (243)
Q Consensus 79 ~~v~~~LG~WQl~R~~wK~~Li~~ie 104 (243)
+..+.+.-.||-.|.+.|.+..+.-+
T Consensus 21 ClaFAgvK~yQ~krlEak~~k~~aek 46 (51)
T PF14981_consen 21 CLAFAGVKMYQRKRLEAKLKKLEAEK 46 (51)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444566899999999987665443
No 10
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=38.27 E-value=1.2e+02 Score=28.81 Aligned_cols=10 Identities=30% Similarity=0.916 Sum_probs=5.1
Q ss_pred HHhhcchhhh
Q 026119 81 ISFGLGTWQI 90 (243)
Q Consensus 81 v~~~LG~WQl 90 (243)
+.++.|.|.+
T Consensus 41 ~alg~~~~~~ 50 (372)
T PF04375_consen 41 LALGAGGWYW 50 (372)
T ss_pred HHHHHHHHHH
Confidence 3345556644
No 11
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=37.49 E-value=41 Score=24.09 Aligned_cols=28 Identities=32% Similarity=0.595 Sum_probs=19.8
Q ss_pred CCchHHHHHHHHHHHHHhhcchhhhhhHHHH
Q 026119 66 PSSTWSKWLLFLPGAISFGLGTWQIFRRQDK 96 (243)
Q Consensus 66 ~~~~~~~l~l~i~~~v~~~LG~WQl~R~~wK 96 (243)
+.++| ++.++.+.++..|.||+-+.-.+
T Consensus 44 p~G~~---ll~~vg~gli~~gi~~~~~a~~~ 71 (73)
T PF06724_consen 44 PFGRW---LLGAVGLGLIGYGIWQFVKAVYR 71 (73)
T ss_pred CCcHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555 45556677789999999887654
No 12
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.43 E-value=22 Score=31.58 Aligned_cols=29 Identities=24% Similarity=0.588 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhcchhhhh---hHHHHHHHH
Q 026119 72 KWLLFLPGAISFGLGTWQIF---RRQDKIKML 100 (243)
Q Consensus 72 ~l~l~i~~~v~~~LG~WQl~---R~~wK~~Li 100 (243)
+++.++.+++|++|+.||+- |..+|.+||
T Consensus 179 ~~fSi~Sl~v~~~va~~QvlyLK~fF~kKKLI 210 (210)
T KOG1691|consen 179 AWFSILSLVVLLSVAGWQVLYLKRFFQKKKLI 210 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 34555666788899999964 555555443
No 13
>COG3768 Predicted membrane protein [Function unknown]
Probab=34.31 E-value=73 Score=30.19 Aligned_cols=56 Identities=21% Similarity=0.194 Sum_probs=27.1
Q ss_pred cCCcccccc----ccccccC-CCCCC-CCCcccchhhccCCC-CCchHHHHHHHHHHHHHhhcchh
Q 026119 30 RAPPRLYSS----SAAAALS-SAPQL-SSSSQDQENVRKGSA-PSSTWSKWLLFLPGAISFGLGTW 88 (243)
Q Consensus 30 ~~~~~~~~~----~~~~~~~-~~~~~-~~~~~~~~~~r~~~~-~~~~~~~l~l~i~~~v~~~LG~W 88 (243)
|.+||.|.+ ++++..+ .++.. ..... .+-++.+ +.+.|.+.+.+..++++++.|.|
T Consensus 20 ~r~~r~f~~~~~~~~pa~~D~e~~~d~~~ae~---~~~a~~rpr~s~~k~~~~a~~vLf~~Av~~q 82 (350)
T COG3768 20 FRAPREFDEDAENFTPAELDVEDPEDEGAAEA---PVEAPLRPRSSFWKIMLGAGGVLFSLAVGLQ 82 (350)
T ss_pred ccCccccchHHHhcCccccccccccchhhhhh---HHhhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 889999996 6654443 22211 00010 1112222 23455555555555556666666
No 14
>PTZ00370 STEVOR; Provisional
Probab=32.44 E-value=47 Score=30.94 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=28.4
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhcchhhhhhHH--HHHH
Q 026119 62 KGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQ--DKIK 98 (243)
Q Consensus 62 ~~~~~~~~~~~l~l~i~~~v~~~LG~WQl~R~~--wK~~ 98 (243)
++-|.|=.+..++++++.++++-|-.|=+.|+. ||++
T Consensus 251 saaF~Pygiaalvllil~vvliilYiwlyrrRK~swkhe 289 (296)
T PTZ00370 251 SSAFYPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHE 289 (296)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 344555566677788888899999999999874 8875
No 15
>PF06864 PAP_PilO: Pilin accessory protein (PilO); InterPro: IPR009663 This family consists of several enterobacterial PilO proteins. The function of PilO is unknown although it has been suggested that it is a cytoplasmic protein in the absence of other Pil proteins, but PilO protein is translocated to the outer membrane in the presence of other Pil proteins. Alternatively, PilO protein may form a complex with other Pil protein(s). PilO has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body []. This family does not seem to be related to IPR007445 from INTERPRO.
Probab=29.93 E-value=84 Score=30.13 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=10.2
Q ss_pred hcchhhhhhHHHHHHHHHHH
Q 026119 84 GLGTWQIFRRQDKIKMLEYR 103 (243)
Q Consensus 84 ~LG~WQl~R~~wK~~Li~~i 103 (243)
+-|.|.+++.+.|++..+..
T Consensus 180 ~~g~~~~~~~~~~~~~~a~~ 199 (414)
T PF06864_consen 180 GYGWWYWQAQQEEARRAAAA 199 (414)
T ss_pred HHHHHHhhhhhhHHHHHHHH
Confidence 34554555555555554443
No 16
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=29.90 E-value=94 Score=25.09 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=14.7
Q ss_pred HHHHHhhcchhhhhhHHHHHH
Q 026119 78 PGAISFGLGTWQIFRRQDKIK 98 (243)
Q Consensus 78 ~~~v~~~LG~WQl~R~~wK~~ 98 (243)
+.++=+.||.||+.+...--+
T Consensus 12 a~llQ~~lg~~Qik~Fn~~~~ 32 (118)
T PRK10234 12 AWCAQLALGGWQISRFNRAFD 32 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334447999999998776544
No 17
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=29.08 E-value=1.3e+02 Score=19.85 Aligned_cols=9 Identities=0% Similarity=-0.352 Sum_probs=3.5
Q ss_pred hhcchhhhh
Q 026119 83 FGLGTWQIF 91 (243)
Q Consensus 83 ~~LG~WQl~ 91 (243)
+..-.|+-.
T Consensus 22 ~~~~~~~~r 30 (46)
T PF04995_consen 22 IVWSLRRRR 30 (46)
T ss_pred HHHHHHHHH
Confidence 333344333
No 18
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=28.42 E-value=1.9e+02 Score=20.44 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHhcC
Q 026119 72 KWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQM 109 (243)
Q Consensus 72 ~l~l~i~~~v~~~LG~WQl~R~~wK~~Li~~ie~r~~a 109 (243)
+++..+++++.+.-|-|-.-|.-++.++-+..++.+++
T Consensus 9 LyFctvVcaLYLvsGGyk~IRnY~r~Kid~aAaeK~s~ 46 (59)
T PF07125_consen 9 LYFCTVVCALYLVSGGYKVIRNYFRRKIDDAAAEKISA 46 (59)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555666778999999999998877777666653
No 19
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=28.20 E-value=1.8e+02 Score=29.79 Aligned_cols=18 Identities=17% Similarity=0.458 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhhcchh
Q 026119 71 SKWLLFLPGAISFGLGTW 88 (243)
Q Consensus 71 ~~l~l~i~~~v~~~LG~W 88 (243)
.++++++++++.++.|.|
T Consensus 325 ~~~~~~l~~~~~~g~~~~ 342 (656)
T PRK06975 325 ALWFVVVVLACAAAVGGY 342 (656)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444454443
No 20
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=28.13 E-value=1.5e+02 Score=25.27 Aligned_cols=7 Identities=29% Similarity=0.520 Sum_probs=4.0
Q ss_pred hhcchhh
Q 026119 83 FGLGTWQ 89 (243)
Q Consensus 83 ~~LG~WQ 89 (243)
+.+|.||
T Consensus 27 ~~~g~~~ 33 (198)
T PRK10370 27 LLSPKWQ 33 (198)
T ss_pred HHcchHH
Confidence 4566663
No 21
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=26.20 E-value=49 Score=30.79 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=27.2
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhcchhhhhhHH--HHH
Q 026119 62 KGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQ--DKI 97 (243)
Q Consensus 62 ~~~~~~~~~~~l~l~i~~~v~~~LG~WQl~R~~--wK~ 97 (243)
++-|.|=.+..++++++.++++-|-.|=+.|+. ||+
T Consensus 255 ~aaF~Pcgiaalvllil~vvliiLYiWlyrrRK~swkh 292 (295)
T TIGR01478 255 TSTFLPYGIAALVLIILTVVLIILYIWLYRRRKKSWKH 292 (295)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 344555566677788888899999999998875 665
No 22
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=25.98 E-value=1.6e+02 Score=23.01 Aligned_cols=8 Identities=13% Similarity=-0.039 Sum_probs=3.7
Q ss_pred hHHHHHHH
Q 026119 69 TWSKWLLF 76 (243)
Q Consensus 69 ~~~~l~l~ 76 (243)
+|.++.++
T Consensus 3 ~~~~~~l~ 10 (110)
T PF10828_consen 3 KYIYIALA 10 (110)
T ss_pred HHHHHHHH
Confidence 45544433
No 23
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=25.93 E-value=1.2e+02 Score=23.88 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhcchhhhhhHHHHHH
Q 026119 74 LLFLPGAISFGLGTWQIFRRQDKIK 98 (243)
Q Consensus 74 ~l~i~~~v~~~LG~WQl~R~~wK~~ 98 (243)
+++++.++=..||.||+.+...--+
T Consensus 7 ~~~~~~~lQ~~l~~~Qik~f~~~~~ 31 (109)
T PF06923_consen 7 LLVIAWLLQILLGWFQIKNFNKAYK 31 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334447999999998776544
No 24
>KOG1228 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.46 E-value=75 Score=28.57 Aligned_cols=75 Identities=9% Similarity=0.021 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHHHHHHHhc-CCCcccCCCCC-C---CCCcCCccceEEEEEEEEeCCceEEEccccccCCCCCcccEEEE
Q 026119 90 IFRRQDKIKMLEYRQNRLQ-MDPLRLNITSP-L---TEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVI 164 (243)
Q Consensus 90 l~R~~wK~~Li~~ie~r~~-a~Pv~l~~~~~-~---~~~~~~~eyrrV~v~G~f~~~~~~lv~~R~~~~~g~~~~Gy~Vl 164 (243)
..=.+||.+.++.++.... .-|--..+... + -.+..++-|..-+++|+.. +|+.+ .+...++++.|||++
T Consensus 5 ~~Fek~Kaa~L~~i~Ssv~D~SpKG~~Depi~plld~IN~hpd~fTTSSCSGRIs----vl~qg-~N~~~~k~qgg~WLy 79 (256)
T KOG1228|consen 5 AEFEKWKAAILNEIDSSVPDLSPKGSVDEPIVPLLDFINMHPDFFTTSSCSGRIS----VLDQG-INGFEVKGQGGCWLY 79 (256)
T ss_pred hhHHHHHHHHHHhhcccCCCCCCCCCCCcchhHHHHHhhcCCceEEcccccceEE----EEeec-cCcccccCCCceEEE
Confidence 3445899999998876322 22211111100 0 0144556778888999874 45533 211123456799998
Q ss_pred eeeee
Q 026119 165 TPLMP 169 (243)
Q Consensus 165 tP~~~ 169 (243)
.-=..
T Consensus 80 VTHd~ 84 (256)
T KOG1228|consen 80 VTHDL 84 (256)
T ss_pred Eeccc
Confidence 75443
No 25
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=24.33 E-value=1.1e+02 Score=24.98 Aligned_cols=11 Identities=9% Similarity=-0.058 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 026119 95 DKIKMLEYRQN 105 (243)
Q Consensus 95 wK~~Li~~ie~ 105 (243)
+|.+-+.++++
T Consensus 50 yrr~Al~~L~~ 60 (146)
T PF14316_consen 50 YRREALRELAQ 60 (146)
T ss_pred HHHHHHHHHHH
Confidence 44555555543
No 26
>KOG3835 consensus Transcriptional corepressor NAB1 [Transcription]
Probab=23.52 E-value=59 Score=31.61 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.9
Q ss_pred hcchhhhhhHHHHHHHHHHHHHHhcC
Q 026119 84 GLGTWQIFRRQDKIKMLEYRQNRLQM 109 (243)
Q Consensus 84 ~LG~WQl~R~~wK~~Li~~ie~r~~a 109 (243)
.||-||+.|--+|.+|+..++.-+++
T Consensus 8 TLgElQLyrVLqkANLlsYyd~FIqQ 33 (495)
T KOG3835|consen 8 TLGELQLYRVLQKANLLSYYDVFIQQ 33 (495)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 58999999999999999988876664
No 27
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.39 E-value=30 Score=27.07 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=24.5
Q ss_pred HHHhhhhhhhhhcCcccccccccCCccc
Q 026119 8 AVASISKTLTKLGGGSSFLLNHRAPPRL 35 (243)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (243)
+..++|-|++-+|+|++|++---+||=.
T Consensus 45 ~~Qqls~tvy~vg~~~v~t~li~LPpwP 72 (101)
T KOG4112|consen 45 AQQQLSVTVYIVGAGFVFTLLITLPPWP 72 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 5678999999999999999998888833
No 28
>PF11743 DUF3301: Protein of unknown function (DUF3301); InterPro: IPR021732 This family is conserved in Proteobacteria, but the function is not known.
Probab=23.35 E-value=1.3e+02 Score=23.10 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=16.9
Q ss_pred HHHhhcchhhhhhHHHHHHHHHHH
Q 026119 80 AISFGLGTWQIFRRQDKIKMLEYR 103 (243)
Q Consensus 80 ~v~~~LG~WQl~R~~wK~~Li~~i 103 (243)
++++..-.||..|..|.....++.
T Consensus 8 l~~~~~~~w~~~~~~E~A~~~a~~ 31 (97)
T PF11743_consen 8 LALVGWFWWQSRRQRERALQAARR 31 (97)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345577789999888876655544
No 29
>PHA00276 phage lambda Rz-like lysis protein
Probab=23.06 E-value=1e+02 Score=25.83 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=25.0
Q ss_pred HHHHHHhhcchh---hhhhHHHHHHHHHHHHHHhcCC
Q 026119 77 LPGAISFGLGTW---QIFRRQDKIKMLEYRQNRLQMD 110 (243)
Q Consensus 77 i~~~v~~~LG~W---Ql~R~~wK~~Li~~ie~r~~a~ 110 (243)
+++++|+++|.| +-...+||..+.+++.....+.
T Consensus 11 ~~a~~~~~~gy~~g~~~~~~~w~~~~~~e~~~~~~a~ 47 (144)
T PHA00276 11 VLAAMLFGLGYHLGSDSANAKWKQEVQNEYVKKVEAT 47 (144)
T ss_pred HHHHHHHHhhhccCCCcccchHHHHHHHHHHHHHHHH
Confidence 455677888888 6678889998888776665543
No 30
>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.82 E-value=79 Score=23.91 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=23.5
Q ss_pred hcchhhhhhHHHHHHHHHHHHHHhcCC
Q 026119 84 GLGTWQIFRRQDKIKMLEYRQNRLQMD 110 (243)
Q Consensus 84 ~LG~WQl~R~~wK~~Li~~ie~r~~a~ 110 (243)
.||-||+.|.-.|.+|++.++.-++..
T Consensus 6 ~l~elqly~vLqrAnLl~Yyd~fi~~G 32 (82)
T PF04904_consen 6 TLGELQLYRVLQRANLLQYYDTFIAQG 32 (82)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 479999999999999999998877643
No 31
>COG2149 Predicted membrane protein [Function unknown]
Probab=22.38 E-value=1.2e+02 Score=24.74 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhcchhhhhhHHHHH
Q 026119 73 WLLFLPGAISFGLGTWQIFRRQDKI 97 (243)
Q Consensus 73 l~l~i~~~v~~~LG~WQl~R~~wK~ 97 (243)
++++++.+++..+|.|-++|.++-.
T Consensus 61 ~fii~~gil~~a~g~~r~~~~~~am 85 (120)
T COG2149 61 VFLILVGILLAALGALRWQRVERAM 85 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556677899999999887743
Done!