Query 026119
Match_columns 243
No_of_seqs 169 out of 982
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 06:03:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lx0_A Membrane fusion protein 63.1 3.5 0.00012 24.3 1.6 28 67-94 3-30 (32)
2 1zza_A Stannin, AG8_1; helix, 12.1 82 0.0028 22.6 1.3 14 82-95 29-42 (90)
3 1rz2_A Conserved hypothetical 11.6 49 0.0017 28.2 0.0 7 99-105 45-51 (254)
4 1oqw_A Fimbrial protein; type 9.6 4.7E+02 0.016 19.6 5.2 26 74-99 8-33 (144)
5 2hi2_A Fimbrial protein; type 8.6 4.5E+02 0.015 19.9 4.7 6 84-89 20-25 (158)
6 4gac_A Alcohol dehydrogenase [ 8.5 1.3E+02 0.0044 25.9 1.5 24 83-110 16-39 (324)
7 3j00_Z Cell division protein F 8.3 2.2E+02 0.0076 20.9 2.5 22 69-90 3-24 (98)
8 2knc_B Integrin beta-3; transm 8.2 5.7E+02 0.019 17.9 5.5 10 80-89 24-33 (79)
9 2f93_B Sensory rhodopsin II tr 8.1 1.8E+02 0.0063 22.5 2.0 20 69-88 61-80 (122)
10 3syn_E ATP-binding protein YLX 8.0 2.8E+02 0.0094 15.0 2.1 18 89-106 2-19 (23)
No 1
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=63.12 E-value=3.5 Score=24.30 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=20.6
Q ss_pred CchHHHHHHHHHHHHHhhcchhhhhhHH
Q 026119 67 SSTWSKWLLFLPGAISFGLGTWQIFRRQ 94 (243)
Q Consensus 67 ~~~~~~l~l~i~~~v~~~LG~WQl~R~~ 94 (243)
+..|-.+..+++...+++.|+|-+.-+|
T Consensus 3 htiweviaglvalltflafgfwlfkylq 30 (32)
T 2lx0_A 3 HTIWEVIAGLVALLTFLAFGFWLFKYLQ 30 (32)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577777777777788899999776443
No 2
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=12.14 E-value=82 Score=22.63 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=10.8
Q ss_pred HhhcchhhhhhHHH
Q 026119 82 SFGLGTWQIFRRQD 95 (243)
Q Consensus 82 ~~~LG~WQl~R~~w 95 (243)
.+-+|+|-+-|+|.
T Consensus 29 ~li~gcwcylrlqr 42 (90)
T 1zza_A 29 ALILGCWCYLRLQR 42 (90)
T ss_dssp HHHHHHHTTTSSCS
T ss_pred HHHHHHHHHHHHHH
Confidence 36789999988753
No 3
>1rz2_A Conserved hypothetical protein BA4783; sortase B protein, B. anthracis, structural genomics, PSI, P structure initiative; 1.60A {Bacillus anthracis} SCOP: b.100.1.1 PDB: 2oqz_A* 2oqw_A*
Probab=11.64 E-value=49 Score=28.19 Aligned_cols=7 Identities=29% Similarity=0.363 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 026119 99 MLEYRQN 105 (243)
Q Consensus 99 Li~~ie~ 105 (243)
..+++++
T Consensus 45 ~~~~l~~ 51 (254)
T 1rz2_A 45 VMAEAQN 51 (254)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 4
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=9.62 E-value=4.7e+02 Score=19.58 Aligned_cols=26 Identities=8% Similarity=-0.133 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhcchhhhhhHHHHHHH
Q 026119 74 LLFLPGAISFGLGTWQIFRRQDKIKM 99 (243)
Q Consensus 74 ~l~i~~~v~~~LG~WQl~R~~wK~~L 99 (243)
+++++++++..++.-.+++...|.++
T Consensus 8 ivi~Ii~il~~ia~p~~~~~~~~~~~ 33 (144)
T 1oqw_A 8 IVVAIIGILAAIAIPQYQNYVARSEG 33 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555444443
No 5
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=8.55 E-value=4.5e+02 Score=19.92 Aligned_cols=6 Identities=33% Similarity=0.573 Sum_probs=2.5
Q ss_pred hcchhh
Q 026119 84 GLGTWQ 89 (243)
Q Consensus 84 ~LG~WQ 89 (243)
.+-.||
T Consensus 20 ~~p~~~ 25 (158)
T 2hi2_A 20 ALPAYQ 25 (158)
T ss_dssp HTTTHH
T ss_pred HHHHHH
Confidence 344443
No 6
>4gac_A Alcohol dehydrogenase [NADP(+)]; TIM barrel, aldheyde reductase AKR1A4, SMAR1, oxidoreductase; HET: FLC; 1.64A {Mus musculus} PDB: 2alr_A 3h4g_A* 3cv7_A* 3fx4_A* 1ae4_A* 1cwn_A* 1hqt_A*
Probab=8.54 E-value=1.3e+02 Score=25.87 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=14.7
Q ss_pred hhcchhhhhhHHHHHHHHHHHHHHhcCC
Q 026119 83 FGLGTWQIFRRQDKIKMLEYRQNRLQMD 110 (243)
Q Consensus 83 ~~LG~WQl~R~~wK~~Li~~ie~r~~a~ 110 (243)
++||+||+...+-+. .++.++...
T Consensus 16 iGlGtw~~~~~~a~~----~i~~Al~~G 39 (324)
T 4gac_A 16 IGLGTWKSEPGQVKA----AIKHALSAG 39 (324)
T ss_dssp BCEECTTCCHHHHHH----HHHHHHHTT
T ss_pred ceeECCCCCHHHHHH----HHHHHHHcC
Confidence 489999987655443 344444443
No 7
>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
Probab=8.27 E-value=2.2e+02 Score=20.88 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHhhcchhhh
Q 026119 69 TWSKWLLFLPGAISFGLGTWQI 90 (243)
Q Consensus 69 ~~~~l~l~i~~~v~~~LG~WQl 90 (243)
.|..+++++++++.+..|.|.+
T Consensus 3 ~~~G~~F~l~Vl~~l~~~~~~~ 24 (98)
T 3j00_Z 3 RLAGILFLLTVLTTVLVSGWVV 24 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred eechhhHHHHHHHHHHHHHHHH
Confidence 4555544444445556667755
No 8
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=8.16 E-value=5.7e+02 Score=17.86 Aligned_cols=10 Identities=20% Similarity=0.185 Sum_probs=5.3
Q ss_pred HHHhhcchhh
Q 026119 80 AISFGLGTWQ 89 (243)
Q Consensus 80 ~v~~~LG~WQ 89 (243)
+.++.|..|-
T Consensus 24 iGllllliwk 33 (79)
T 2knc_B 24 IGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444556665
No 9
>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=8.05 E-value=1.8e+02 Score=22.47 Aligned_cols=20 Identities=15% Similarity=-0.160 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHhhcchh
Q 026119 69 TWSKWLLFLPGAISFGLGTW 88 (243)
Q Consensus 69 ~~~~l~l~i~~~v~~~LG~W 88 (243)
.|..++.+++++.+..+|.|
T Consensus 61 ~~liil~~v~lv~LgvvG~~ 80 (122)
T 2f93_B 61 SAILGLIILLGINLGLVAAT 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45444455555556677777
No 10
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=7.99 E-value=2.8e+02 Score=15.00 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=13.4
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 026119 89 QIFRRQDKIKMLEYRQNR 106 (243)
Q Consensus 89 Ql~R~~wK~~Li~~ie~r 106 (243)
|+.|.++-..|-+.+|.|
T Consensus 2 qmnrydqaatlrakmekr 19 (23)
T 3syn_E 2 QMNRYDQAATLRAKMEKR 19 (26)
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 778888877777777665
Done!