Query 026120
Match_columns 243
No_of_seqs 164 out of 1168
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 06:04:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yby_A Translation elongation 100.0 4E-79 1.4E-83 534.2 24.8 207 34-242 9-215 (215)
2 1ueb_A EF-P, TT0860, elongatio 100.0 4.7E-76 1.6E-80 504.5 26.6 184 58-242 1-184 (184)
3 3oyy_A EF-P, elongation factor 100.0 7.3E-76 2.5E-80 505.8 25.5 186 57-243 3-190 (191)
4 3tre_A EF-P, elongation factor 100.0 9.6E-77 3.3E-81 511.4 17.9 188 56-243 4-191 (191)
5 3a5z_B EF-P, elongation factor 100.0 1.1E-76 3.8E-81 510.9 13.5 187 57-243 5-191 (191)
6 1bkb_A Translation initiation 100.0 3E-41 1E-45 276.2 17.9 125 56-180 6-132 (136)
7 1iz6_A Initiation factor 5A; S 100.0 3E-40 1E-44 271.1 17.1 122 57-178 5-129 (138)
8 3cpf_A Eukaryotic translation 100.0 1.2E-39 4.3E-44 267.3 14.3 118 57-174 5-126 (138)
9 2eif_A IF-5A, protein (eukaryo 100.0 9.9E-39 3.4E-43 261.4 17.6 118 58-178 10-128 (136)
10 1x6o_A Eukaryotic initiation f 100.0 9.2E-37 3.1E-41 258.9 15.0 118 57-174 29-158 (174)
11 3er0_A Eukaryotic translation 100.0 2.2E-37 7.4E-42 261.2 10.2 119 56-174 28-150 (167)
12 3hks_A EIF-5A-2, eukaryotic tr 100.0 1.1E-35 3.8E-40 250.7 14.4 119 56-174 26-150 (167)
13 1khi_A HEX1; membrane sealing, 99.6 1.6E-14 5.4E-19 122.1 14.1 117 56-178 32-164 (176)
14 3r8s_P 50S ribosomal protein L 60.6 19 0.00065 28.0 5.9 67 58-125 13-88 (114)
15 3v2d_T 50S ribosomal protein L 57.0 23 0.00077 28.7 5.9 67 58-125 16-91 (146)
16 1yfb_A Transition state regula 56.7 12 0.0004 25.6 3.7 34 143-178 19-52 (59)
17 2ftc_K 39S ribosomal protein L 55.2 47 0.0016 25.0 7.2 62 62-124 2-71 (98)
18 2jn4_A Hypothetical protein FI 51.1 42 0.0014 24.9 6.1 53 163-222 19-72 (87)
19 1ed7_A Chitinase A1, (CHBD-CHI 49.5 5.6 0.00019 25.6 1.0 26 63-88 7-32 (45)
20 1dj7_B Ferredoxin thioredoxin 46.4 4.3 0.00015 29.5 0.1 18 172-189 41-58 (75)
21 2zjr_M 50S ribosomal protein L 44.0 23 0.00077 29.3 4.1 66 59-125 22-96 (166)
22 3iz6_D 40S ribosomal protein S 43.7 24 0.00083 31.2 4.5 32 208-239 138-170 (265)
23 1jt8_A EIF-1A, probable transl 43.4 26 0.00087 26.6 4.0 49 178-234 10-70 (102)
24 3kbg_A 30S ribosomal protein S 42.4 25 0.00085 30.2 4.2 32 208-239 102-134 (213)
25 1mvg_A Liver basic fatty acid 42.2 81 0.0028 24.1 6.9 45 95-139 46-91 (125)
26 3j20_E 30S ribosomal protein S 39.4 14 0.00049 32.3 2.3 31 208-238 139-173 (243)
27 1ifc_A Intestinal fatty acid b 38.7 84 0.0029 24.2 6.6 45 95-139 47-92 (132)
28 1mdc_A Insect fatty acid bindi 38.6 1E+02 0.0034 23.8 7.0 45 95-139 48-93 (132)
29 2a0a_A DER F 13; beta barrel, 37.7 1.3E+02 0.0045 23.1 7.5 45 95-139 48-94 (131)
30 3ppt_A Sodium-calcium exchange 37.6 1.1E+02 0.0038 23.6 7.2 45 95-139 48-93 (133)
31 4a1y_A Myelin P2 protein; tran 37.6 70 0.0024 24.9 5.9 44 96-139 51-95 (133)
32 3u5c_E RP5, S7, YS6, 40S ribos 36.9 25 0.00085 31.1 3.4 32 208-239 138-170 (261)
33 1b56_A Fatty acid binding prot 36.4 63 0.0022 25.1 5.5 45 95-139 51-96 (135)
34 2f9h_A PTS system, IIA compone 36.1 33 0.0011 27.0 3.8 21 62-82 53-73 (129)
35 1o8v_A Fatty acid binding prot 36.0 68 0.0023 24.9 5.6 45 95-139 50-95 (134)
36 2l66_A SSO7C4, transcriptional 35.2 16 0.00055 23.9 1.6 32 143-176 9-40 (53)
37 2xzm_W 40S ribosomal protein S 35.2 51 0.0018 29.0 5.2 30 208-237 140-170 (260)
38 1vyf_A SM14, 14 kDa fatty acid 35.1 1E+02 0.0035 23.8 6.6 44 96-139 51-96 (135)
39 3q6l_A Fatty acid-binding prot 34.9 1.2E+02 0.0043 24.1 7.2 45 95-139 69-114 (152)
40 2k50_A Replication factor A re 34.7 70 0.0024 23.5 5.3 55 55-113 4-63 (115)
41 3p6d_A Fatty acid-binding prot 34.3 1.3E+02 0.0046 23.4 7.2 45 95-139 56-101 (139)
42 1fdq_A Fatty acid-binding prot 33.7 83 0.0029 24.2 5.8 45 95-139 48-93 (131)
43 1mvf_D MAZE protein, PEMI-like 33.6 34 0.0011 24.1 3.2 31 146-178 13-43 (82)
44 2pp6_A Gifsy-2 prophage ATP-bi 33.6 86 0.0029 23.8 5.5 31 65-98 65-95 (102)
45 2dgy_A MGC11102 protein; EIF-1 33.2 87 0.003 23.9 5.7 30 205-234 28-65 (111)
46 4a60_A Fatty acid-binding prot 32.6 1.2E+02 0.004 24.4 6.6 44 96-139 72-116 (154)
47 1k0h_A Gpfii; twisted beta-san 32.5 13 0.00044 28.8 0.8 23 61-83 72-94 (117)
48 1p6p_A Fatty acid-binding prot 32.4 70 0.0024 24.5 5.1 44 96-139 47-91 (125)
49 2qo4_A Liver-basic fatty acid 31.8 72 0.0025 24.4 5.1 45 96-140 48-93 (126)
50 1ggl_A Protein (cellular retin 31.7 1.2E+02 0.0041 23.4 6.5 44 96-139 49-95 (134)
51 2rcq_A CRBP-II, retinol-bindin 31.6 1E+02 0.0036 24.1 6.1 45 95-139 52-99 (141)
52 1lpj_A Retinol-binding protein 29.0 94 0.0032 24.0 5.3 45 95-139 48-95 (133)
53 1crb_A Cellular retinol bindin 28.7 76 0.0026 24.6 4.7 45 95-139 48-95 (134)
54 1ftp_A Muscle fatty acid bindi 28.6 94 0.0032 24.0 5.3 44 96-139 51-96 (133)
55 1eal_A Gastrotropin, ileal lip 27.9 1.2E+02 0.0042 23.1 5.8 44 96-139 47-92 (127)
56 2f73_A L-FABP, fatty acid-bind 27.9 1E+02 0.0035 24.5 5.4 44 96-139 70-115 (149)
57 2kca_A Bacteriophage SPP1 comp 27.0 1.4E+02 0.0047 21.3 5.7 38 62-101 66-104 (109)
58 3rsw_A Fatty acid-binding prot 26.8 1.2E+02 0.0041 24.4 5.7 43 96-138 75-118 (158)
59 2lba_A BABP protein; ileal bIl 24.8 85 0.0029 24.5 4.4 44 96-139 52-97 (136)
60 2g7b_A Cellular retinoic acid- 24.3 1.5E+02 0.005 23.0 5.7 44 96-139 50-95 (137)
61 1d7q_A Translation initiation 24.1 2.1E+02 0.0071 22.8 6.6 43 185-235 32-82 (143)
62 2ftc_B Mitochondrial ribosomal 23.4 1.7E+02 0.0059 23.0 5.9 87 57-151 25-112 (136)
63 1at0_A 17-hedgehog; developmen 23.3 1.2E+02 0.0041 23.5 5.1 30 56-85 84-119 (145)
64 2ki8_A Tungsten formylmethanof 23.1 39 0.0013 26.5 2.1 21 222-242 66-86 (146)
65 1at0_A 17-hedgehog; developmen 21.7 1.4E+02 0.0047 23.2 5.1 44 56-99 13-61 (145)
66 1g6p_A Cold shock protein TMCS 21.6 1.7E+02 0.0059 19.6 5.0 44 133-176 10-54 (66)
67 4h87_A Kanadaptin; FHA domain 20.7 41 0.0014 26.0 1.7 31 210-240 96-128 (130)
68 2l55_A SILB,silver efflux prot 20.7 1.5E+02 0.0051 21.1 4.7 32 60-91 44-80 (82)
69 3vg7_A Fatty acid-binding prot 20.6 1.7E+02 0.0058 22.6 5.3 44 96-139 51-96 (132)
70 3u30_A Ubiquitin, linear DI-ub 20.4 1.1E+02 0.0039 23.9 4.4 87 89-181 16-112 (172)
71 3elx_A Ileal bIle acid-binding 20.4 1.2E+02 0.0041 23.7 4.4 44 96-139 51-96 (138)
No 1
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=100.00 E-value=4e-79 Score=534.16 Aligned_cols=207 Identities=26% Similarity=0.443 Sum_probs=175.4
Q ss_pred CCCCCCccCccccCcccceecceeeEEcCCCCCccEEEECCeEEEEEEeEEecCCCCCeEEeEEEeeCCCCCeEEEEeCC
Q 026120 34 HRSSGDRDTCLLRFPWSATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGT 113 (243)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~R~~~i~a~diKkG~~I~~dG~py~V~~~~h~KpGKG~A~vriklknL~TG~k~e~tf~s 113 (243)
||++++..+---+ .|++|+|++|+++++||+|++|++||+||+|++++|+|||||+||+|+|+|||+||+++|.+|++
T Consensus 9 ~~~~~~~~~~~~~--~~~~~~rg~Mi~a~dlKkG~~I~idG~p~~Vve~~hvKPGKG~A~vr~klknl~TG~~~e~tf~s 86 (215)
T 1yby_A 9 HHSSGLVPRGSQS--TSLYKKAGLMISAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNP 86 (215)
T ss_dssp ------------------------CEEGGGCCTTCEEEETTEEEEEEEEEEECCC--CCEEEEEEEETTTCCEEEEEECT
T ss_pred ccccccccCCCcc--hhhhhhCCEEEEhhhccCCCEEEECCEEEEEEEEEEEcCCCCceEEEEEEEECCCCCEEEEEECC
Confidence 4455554443333 35889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeeeEeeeEEEEEEEeCCEEEEEeCCCccccccCchhhhhhhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEe
Q 026120 114 EEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEI 193 (243)
Q Consensus 114 ~dkve~~~ver~~~qylY~Dgd~~~FMD~etyEQi~l~~~~lgd~~~~L~eg~~v~v~~~dg~~i~v~lP~~V~l~V~et 193 (243)
+|++|.|+++++++||||.|||.|+|||+|||||++||++.+||+.+||+|||+|+|++|+|+||+|+||++|+|+|+||
T Consensus 87 ~ekve~a~verr~~QylY~Dgd~y~FMD~ETyEQi~l~~~~lgd~~~fLkEg~~v~v~~~~g~~i~velP~~V~l~V~et 166 (215)
T 1yby_A 87 TDKMPKAHIERKDMQYLYNDGDLYYFMDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIEPPNFVELEVTDT 166 (215)
T ss_dssp TCEECBCCCEEEEEEEEEEETTEEEEECTTTCCEEEEEHHHHTTTTTTCCTTCEEEEEEETTEEEEEECCSEEEEEEEEC
T ss_pred CCEEecceEEEEEEEEEEeCCCEEEEccCCCCeeEEecHHHhhhHHhhCCCCCEEEEEEECCEEEEEECCCEEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcCCCCCceeEEeecCcEEEccccccCCCEEEEECCCCceeecc
Q 026120 194 HASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 242 (243)
Q Consensus 194 ~p~~KGdTa~~~~K~A~LetG~~v~VP~FI~~Gd~I~VdT~~g~Yv~R~ 242 (243)
+|++|||||++++|||+||||++|+||+||++||+|+||||||+|++||
T Consensus 167 eP~vkGdTa~~~~KpA~leTG~~v~VP~FI~~Gd~I~VdT~~g~Y~~R~ 215 (215)
T 1yby_A 167 EPGFKGDTATGATKPAIVETGASIKVPLFVNKGDIIRIDTRTGEYMERV 215 (215)
T ss_dssp -------CCSCCEEEEEETTSCEEEEETTCCTTCEEEEETTTTEEEEEC
T ss_pred CCCccccccCCCCccEEEeCCcEEEeCCcEeCCCEEEEECCCCeEeccC
Confidence 9999999999999999999999999999999999999999999999997
No 2
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=100.00 E-value=4.7e-76 Score=504.50 Aligned_cols=184 Identities=28% Similarity=0.585 Sum_probs=182.7
Q ss_pred eEEcCCCCCccEEEECCeEEEEEEeEEecCCCCCeEEeEEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEEeCCEE
Q 026120 58 KVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTA 137 (243)
Q Consensus 58 ~i~a~diKkG~~I~~dG~py~V~~~~h~KpGKG~A~vriklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~Dgd~~ 137 (243)
|+++|+||+|++|++||+||+|++++|+|||||+|++|+++|||+||+++|.+|+++|++|.|+++++++||||.|||.|
T Consensus 1 mi~a~dlkkG~~i~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd~~ 80 (184)
T 1ueb_A 1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPEGEEM 80 (184)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEEEETTSCCEEEEEEEESSSSCEEEEEEETTCEEEECCEEEEEEEEEEEETTEE
T ss_pred CcchhhcCCCCEEEECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCEEEEEECCCCEEEeeeEEEEEEEEEEeCCCEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCccccccCchhhhhhhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEecCCCCCcCCCCCceeEEeecCcEE
Q 026120 138 FVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTV 217 (243)
Q Consensus 138 ~FMD~etyEQi~l~~~~lgd~~~~L~eg~~v~v~~~dg~~i~v~lP~~V~l~V~et~p~~KGdTa~~~~K~A~LetG~~v 217 (243)
+|||+|||||++||++.+|++ +||+|||+|++++|+|+||+|+||++|+|+|++|+|++|||||++++|||+||||++|
T Consensus 81 ~FMD~etyeq~~l~~~~lgd~-~~L~eg~~v~v~~~~g~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG~~v 159 (184)
T 1ueb_A 81 VFMDLETYEQFAVPRSRVVGA-EFFKEGMTALGDMYEGQPIKVTPPTVVELKVVDTPPGVRGDTVSGGSKPATLETGAVV 159 (184)
T ss_dssp EEEETTTCCEEEEEGGGBTTG-GGCCTTCEEEEEEETTEEEEEECCSEEEEEEEECCSSSCCSSSSCSEEEEEETTSCEE
T ss_pred EEeeCCCceeEEcCHHHcChh-hhcCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCCccEEEcCCCEE
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EccccccCCCEEEEECCCCceeecc
Q 026120 218 MVPSYLEIGEEIFINPQDDSYIGRA 242 (243)
Q Consensus 218 ~VP~FI~~Gd~I~VdT~~g~Yv~R~ 242 (243)
+||+||++||+|+||||||+|++||
T Consensus 160 ~VP~fi~~Gd~I~vdT~~g~Y~~R~ 184 (184)
T 1ueb_A 160 QVPLFVEPGEVIKVDTRTGEYVGRA 184 (184)
T ss_dssp EEETTCCTTCEEEEETTTTEEEEEC
T ss_pred EeCCcCcCCCEEEEECCCCeEeccC
Confidence 9999999999999999999999997
No 3
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=100.00 E-value=7.3e-76 Score=505.83 Aligned_cols=186 Identities=24% Similarity=0.427 Sum_probs=181.7
Q ss_pred eeEEcCCCCCccEEEECCeEEEEEEeEEecCCCCCeEEeEEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEEeCCE
Q 026120 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDT 136 (243)
Q Consensus 57 ~~i~a~diKkG~~I~~dG~py~V~~~~h~KpGKG~A~vriklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~Dgd~ 136 (243)
.|+++|+||+|++|++||+||+|++++|+|||||+|++|+++|||+||+++|.+|+++|++|.|+++++++||||.|||.
T Consensus 3 ~m~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd~ 82 (191)
T 3oyy_A 3 SMKTAQEFRAGQVANINGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFADPL 82 (191)
T ss_dssp CCEEGGGCCTTCEEEETTEEEEEEEEEEECCTTSCCEEEEEEEETTTCCEEEEEEETTCEEEECCCEEEEEEEEEECSSS
T ss_pred ccccHHhCCCCCEEEECCEEEEEEEEEeeeCCCCcEEEEEEEEECCCCCEEEEEeCCCCEEEeeeEEEEEEEEEEecCCE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCccccccCchhhhhhhhccCCCCE--EEEEEECCEEEEEeCCCeEEEEEEEecCCCCCcCCCCCceeEEeecC
Q 026120 137 AFVIESETFEQLEVPLDVFGKAGAYLQEGMK--VWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNG 214 (243)
Q Consensus 137 ~~FMD~etyEQi~l~~~~lgd~~~~L~eg~~--v~v~~~dg~~i~v~lP~~V~l~V~et~p~~KGdTa~~~~K~A~LetG 214 (243)
|+||| |||||++||++.+||+.+||+|||+ |++++|||+||+|+||++|+|+|+||+|++|||||++++|||+||||
T Consensus 83 ~~FMD-etyEq~~l~~~~lgd~~~~L~eg~~~~v~v~~~~~~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG 161 (191)
T 3oyy_A 83 YVFMD-SEFNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDKVISVELPTTIVRQIAYTEPAVRGDTSGKVMKTARLNNG 161 (191)
T ss_dssp EEEEE-TTCCEEEECGGGCTTTGGGCCTTCCCCEEEEEETTEEEEEECCSEEEEEEEEECCCCSCCCC--CEEEEEETTS
T ss_pred EEEEe-cChhheeCChHHhhhHHhhCcCCCEeEEEEEEECCEEEEEECCCEEEEEEEEcCCCccccccCCCCceEEEeCC
Confidence 99999 9999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cEEEccccccCCCEEEEECCCCceeeccC
Q 026120 215 VTVMVPSYLEIGEEIFINPQDDSYIGRAK 243 (243)
Q Consensus 215 ~~v~VP~FI~~Gd~I~VdT~~g~Yv~R~k 243 (243)
++|+||+||++||+|+||||||+|++|||
T Consensus 162 ~~v~VP~fi~~Gd~I~VdT~~g~Y~~R~k 190 (191)
T 3oyy_A 162 AELQVSAFCEIGDSIEIDTRTGEYKSRVK 190 (191)
T ss_dssp CEEEEETTCCTTCEEEEETTTTEEEEEC-
T ss_pred CEEEeCCeeeCCCEEEEECCCCeEhhhcc
Confidence 99999999999999999999999999997
No 4
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=100.00 E-value=9.6e-77 Score=511.38 Aligned_cols=188 Identities=26% Similarity=0.418 Sum_probs=128.5
Q ss_pred eeeEEcCCCCCccEEEECCeEEEEEEeEEecCCCCCeEEeEEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEEeCC
Q 026120 56 AVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 135 (243)
Q Consensus 56 ~~~i~a~diKkG~~I~~dG~py~V~~~~h~KpGKG~A~vriklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~Dgd 135 (243)
++|+++++||+|++|++||+||+|++++|+|||||+|++|+++|||+||+++|.+|+++|++|.|+++++++||||.|||
T Consensus 4 m~m~~a~dlkkG~~I~~dG~p~~Vve~~~~KpGKG~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd 83 (191)
T 3tre_A 4 MATHSTNEFRGGLKVMVDGDPCSIIDNEFVKPGKGQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEMQYLYNDGE 83 (191)
T ss_dssp --CEEGGGCCTTCEEEETTEEEEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEETTCEECBCCEEEEEEEEEEECSS
T ss_pred eEEEEHHHCCCCCEEEECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCEEEEEeCCCCEEEeceEEEEEEEEEEEcCC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCccccccCchhhhhhhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEecCCCCCcCCCCCceeEEeecCc
Q 026120 136 TAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGV 215 (243)
Q Consensus 136 ~~~FMD~etyEQi~l~~~~lgd~~~~L~eg~~v~v~~~dg~~i~v~lP~~V~l~V~et~p~~KGdTa~~~~K~A~LetG~ 215 (243)
.|+|||+|||||++||++.+||+.+||+|||+|++++|+|+||+|+||++|+|+|+||+|++|||||++++|||+||||+
T Consensus 84 ~~~FMD~etyEq~~l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG~ 163 (191)
T 3tre_A 84 FWHFMTSENYEQHAASKEAVAEAKQWLKEEALCMVTMWNGVPLSVEPPNFVELKITETEPGVRGDTATGGTKRAKLETGA 163 (191)
T ss_dssp CEEEEESSSCCEEEECHHHHGGGGGGCCTTCEEEEEEETTEEEEEECCSCC-----------------------------
T ss_pred cEEEccCCchHheecchhHhhhHHhhCCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCcCeEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccCCCEEEEECCCCceeeccC
Q 026120 216 TVMVPSYLEIGEEIFINPQDDSYIGRAK 243 (243)
Q Consensus 216 ~v~VP~FI~~Gd~I~VdT~~g~Yv~R~k 243 (243)
+|+||+||++||+|+||||||+|++|||
T Consensus 164 ~v~VP~fi~~Gd~I~VdT~~g~Y~~R~k 191 (191)
T 3tre_A 164 VVRVPLFLNEGEIIKVDTRRGEYVSRAK 191 (191)
T ss_dssp ----------------------------
T ss_pred EEEeCCeEcCCCEEEEECCCCeEecccC
Confidence 9999999999999999999999999997
No 5
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=100.00 E-value=1.1e-76 Score=510.92 Aligned_cols=187 Identities=28% Similarity=0.451 Sum_probs=132.7
Q ss_pred eeEEcCCCCCccEEEECCeEEEEEEeEEecCCCCCeEEeEEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEEeCCE
Q 026120 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDT 136 (243)
Q Consensus 57 ~~i~a~diKkG~~I~~dG~py~V~~~~h~KpGKG~A~vriklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~Dgd~ 136 (243)
+.+++|+||+|++|++||+||+|++++|+|||||+||+|+|+|||+||+++|.+|+++|++|.|+++++++||||.|||.
T Consensus 5 ~~~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd~ 84 (191)
T 3a5z_B 5 ATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEF 84 (191)
T ss_dssp -CEESTTCCTTCEEEETTEEEEEEEEEEECCTTCCCEEEEEEEEGGGTEEEEEEEETTCEEEECCEEEECCEEEEECSSC
T ss_pred ceeeHHHCCCCCEEEECCEEEEEEEEEEEcCCCCcEEEEEEEEECCCCCEEEEEECCCCEEEeeEEEEEEEEEEEeCCCE
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCccccccCchhhhhhhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEecCCCCCcCCCCCceeEEeecCcE
Q 026120 137 AFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVT 216 (243)
Q Consensus 137 ~~FMD~etyEQi~l~~~~lgd~~~~L~eg~~v~v~~~dg~~i~v~lP~~V~l~V~et~p~~KGdTa~~~~K~A~LetG~~ 216 (243)
|+|||+|||||++||++.+||+.+||+|||+|++++|+|+||+|+||++|+|+|+||+|++|||||++++|||+||||++
T Consensus 85 ~~FMD~etyeQ~~l~~~~lgd~~~~l~e~~~v~v~~~~g~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG~~ 164 (191)
T 3a5z_B 85 WHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGAV 164 (191)
T ss_dssp EEEECTTTCCEEEECHHHHCTTTTTCCSSEECEEEEETTEEEEEECCSCCCCCCC-------------------------
T ss_pred EEEeeCCCCeEEEccHHHhhhHHhhcCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCCccEEEeCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccCCCEEEEECCCCceeeccC
Q 026120 217 VMVPSYLEIGEEIFINPQDDSYIGRAK 243 (243)
Q Consensus 217 v~VP~FI~~Gd~I~VdT~~g~Yv~R~k 243 (243)
|+||+||++||+|+||||||+|++|||
T Consensus 165 v~VP~fi~~Gd~I~VdT~~g~Y~~R~~ 191 (191)
T 3a5z_B 165 VKVPLFVQIGEVIKVDTRSGEYVSRVK 191 (191)
T ss_dssp ---------------------------
T ss_pred EEeCCcEeCCCEEEEECCCCeEeeccC
Confidence 999999999999999999999999996
No 6
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=3e-41 Score=276.18 Aligned_cols=125 Identities=19% Similarity=0.248 Sum_probs=120.8
Q ss_pred eeeEEcCCCCCccEEEECCeEEEEEEeEEecCCCC-CeEEeEEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEEeC
Q 026120 56 AVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRG-GAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEN 134 (243)
Q Consensus 56 ~~~i~a~diKkG~~I~~dG~py~V~~~~h~KpGKG-~A~vriklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~Dg 134 (243)
...+++++||+|++|++||+||+|++++|+||||| +|++|+++|||+||+++|.+|++++++|.|+++++++||||.||
T Consensus 6 t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~~qylY~dg 85 (136)
T 1bkb_A 6 TKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSVSG 85 (136)
T ss_dssp CEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEEECS
T ss_pred EEEEEHHHccCCCEEEECCEEEEEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEEEEEEEEecC
Confidence 46689999999999999999999999999999995 99999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCccccccCchh-hhhhhhccCCCCEEEEEEECCEEEEE
Q 026120 135 DTAFVIESETFEQLEVPLDV-FGKAGAYLQEGMKVWLQLYDGRALSG 180 (243)
Q Consensus 135 d~~~FMD~etyEQi~l~~~~-lgd~~~~L~eg~~v~v~~~dg~~i~v 180 (243)
+.|+|||+|||||++|+.+. +|++.+||+||++|+|++|+|++.-+
T Consensus 86 ~~~~fMD~etyeq~~l~~~~~~gd~~~~l~e~~~v~v~~~~g~~~~~ 132 (136)
T 1bkb_A 86 DVIQLMDMRDYKTIEVPMKYVEEEAKGRLAPGAEVEVWQILDRYKII 132 (136)
T ss_dssp SEEEEEETTTCCEEEEEGGGBCHHHHTTCCTTCEEEEEEETTEEEEE
T ss_pred CEEEEEeCCCCeEEEeccccchhHHHhhCCCCCEEEEEEECCEEEEE
Confidence 99999999999999999999 99999999999999999999998644
No 7
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=3e-40 Score=271.05 Aligned_cols=122 Identities=25% Similarity=0.318 Sum_probs=118.5
Q ss_pred eeEEcCCCCCccEEEECCeEEEEEEeEEecCCC-CCeEEeEEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEEeCC
Q 026120 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 135 (243)
Q Consensus 57 ~~i~a~diKkG~~I~~dG~py~V~~~~h~KpGK-G~A~vriklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~Dgd 135 (243)
..+++++||+|++|++||+||+|++++|+|||| |+|++|+++|||+||+++|.+|++++++|.|+++++++||||.||+
T Consensus 5 ~~i~a~~lkkG~~i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qylY~dg~ 84 (138)
T 1iz6_A 5 TKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAITPD 84 (138)
T ss_dssp EEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEECSS
T ss_pred EEEEHHHccCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCCCEEeeceEEEEEEEEEEeCCC
Confidence 457899999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcccccc--CchhhhhhhhccCCCCEEEEEEECCEEE
Q 026120 136 TAFVIESETFEQLEV--PLDVFGKAGAYLQEGMKVWLQLYDGRAL 178 (243)
Q Consensus 136 ~~~FMD~etyEQi~l--~~~~lgd~~~~L~eg~~v~v~~~dg~~i 178 (243)
.|+|||+|||||++| |.+.+|++.+||+||++|+|+++.|+..
T Consensus 85 ~~~fMD~etyeq~~l~~~~~~lgd~~~~l~e~~~V~v~~~~G~~~ 129 (138)
T 1iz6_A 85 TVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEYWETLGRIK 129 (138)
T ss_dssp EEEEECTTTCCEEEEEHHHHBCGGGTTTCCTTCEEEEEEETTEEE
T ss_pred EEEEEeCCCCceEEeeCCHHHHHHHHHhCCCCCEEEEEEECCcEE
Confidence 999999999999999 8899999999999999999999999864
No 8
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=267.34 Aligned_cols=118 Identities=13% Similarity=0.190 Sum_probs=111.7
Q ss_pred eeEEcCCCCCccEEEECCeEEEEEEeEEecCCCC-CeEEeEEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEEeCC
Q 026120 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRG-GAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 135 (243)
Q Consensus 57 ~~i~a~diKkG~~I~~dG~py~V~~~~h~KpGKG-~A~vriklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~Dgd 135 (243)
..+++++||+|++|++||+||+|++++|+||||| +|++|+++|||+||+++|.+|++++++|.|+++++++||||.||+
T Consensus 5 ~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~kve~~~v~~~~~qyly~dg~ 84 (138)
T 3cpf_A 5 FPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDG 84 (138)
T ss_dssp EEEEGGGCCTTSEEEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEETT
T ss_pred EEEEHHHCcCCCEEEECCEEEEEEEEEeccCCCCccEEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEEecCC
Confidence 5689999999999999999999999999999995 999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCccccc--cCchhhhhhh-hccCCCCEEEEEEEC
Q 026120 136 TAFVIESETFEQLE--VPLDVFGKAG-AYLQEGMKVWLQLYD 174 (243)
Q Consensus 136 ~~~FMD~etyEQi~--l~~~~lgd~~-~~L~eg~~v~v~~~d 174 (243)
.|+|||+|||||++ +|.+.+|++. +||+||++|.|.+|.
T Consensus 85 ~~~fMD~etyeq~~l~l~~~~lgd~~~~~l~eg~~v~V~~~~ 126 (138)
T 3cpf_A 85 YLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLS 126 (138)
T ss_dssp EEEEECTTSCEECCSBCCSHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred EEEEEcCCCCeEeeecCCHHHHHHHHHHHhhCCCEEEEEEEh
Confidence 99999999999999 7999999999 999999999999884
No 9
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=100.00 E-value=9.9e-39 Score=261.41 Aligned_cols=118 Identities=21% Similarity=0.256 Sum_probs=115.0
Q ss_pred eEEcCCCCCccEEEECCeEEEEEEeEEecCCC-CCeEEeEEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEEeCCE
Q 026120 58 KVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDT 136 (243)
Q Consensus 58 ~i~a~diKkG~~I~~dG~py~V~~~~h~KpGK-G~A~vriklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~Dgd~ 136 (243)
.+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|.+|++++++|.|+++++++||||.||+.
T Consensus 10 ~i~~~~lr~G~~I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qyly~dg~~ 89 (136)
T 2eif_A 10 QVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLAIMGDM 89 (136)
T ss_dssp EEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEECEEEEEEEEEEEETTE
T ss_pred EEEHHHCcCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCCCEeccccEeeeEEEEEEecCCE
Confidence 46899999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCccccccCchhhhhhhhccCCCCEEEEEEECCEEE
Q 026120 137 AFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRAL 178 (243)
Q Consensus 137 ~~FMD~etyEQi~l~~~~lgd~~~~L~eg~~v~v~~~dg~~i 178 (243)
|+|||+|||||++|+.+ |++.+ |+||++|+|++|+|++.
T Consensus 90 ~~fMD~etyeq~~l~~~--gd~~~-l~e~~~v~v~~~~G~~~ 128 (136)
T 2eif_A 90 VQIMDLQTYETLELPIP--EGIEG-LEPGGEVEYIEAVGQYK 128 (136)
T ss_dssp EEEEETTTCCEEEEECC--SCCTT-CSTTCEEEEEEETTEEE
T ss_pred EEEEeCCCceEEEecCC--Cchhh-CCCCCEEEEEEECCEEE
Confidence 99999999999999999 89999 99999999999999965
No 10
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=100.00 E-value=9.2e-37 Score=258.88 Aligned_cols=118 Identities=20% Similarity=0.327 Sum_probs=111.3
Q ss_pred eeEEcCCCCCccEEEECCeEEEEEEeEEecCCC-CCeEEeEEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEEeCC
Q 026120 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 135 (243)
Q Consensus 57 ~~i~a~diKkG~~I~~dG~py~V~~~~h~KpGK-G~A~vriklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~Dgd 135 (243)
+.+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|.+|++++++|.|+|++++|||||.|||
T Consensus 29 ~~i~a~dlrkG~~I~idG~p~~Vve~~~~KpGKgG~A~vr~k~kni~TG~k~E~tf~s~~kve~~~Ver~~~QyLY~dgd 108 (174)
T 1x6o_A 29 YPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHNVEVPFVKTYTYSVLDIQAN 108 (174)
T ss_dssp EEEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEECC
T ss_pred EEEEHHHccCCCEEEECCEEEEEEEEEecCCCCCCceEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEEecCC
Confidence 678999999999999999999999999999999 5999999999999999999999999999999999999999999999
Q ss_pred -------EEEEEeCCCcccccc--Cch-hhhhh-hhccCCCCEEEEEEEC
Q 026120 136 -------TAFVIESETFEQLEV--PLD-VFGKA-GAYLQEGMKVWLQLYD 174 (243)
Q Consensus 136 -------~~~FMD~etyEQi~l--~~~-~lgd~-~~~L~eg~~v~v~~~d 174 (243)
.|+|||+|+|||+.| |.+ .+|++ .+||+||++|.|.+|.
T Consensus 109 ~~~~~~g~~~fMD~etyeq~~l~~p~~~~lgd~i~~~l~eg~~v~V~~~~ 158 (174)
T 1x6o_A 109 EDPSLPAHLSLMDDEGESREDLDMPPDPALATQIKEQFDSGKDVLVVVVS 158 (174)
T ss_dssp SSTTSCCEEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cccccccEEEEEcCCCceEEEeeCCchhhHHHHHHHHhhCCCEEEEEEEe
Confidence 999999999999999 788 89999 8999999999999884
No 11
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-37 Score=261.21 Aligned_cols=119 Identities=16% Similarity=0.272 Sum_probs=114.5
Q ss_pred eeeEEcCCCCCccEEEECCeEEEEEEeEEecCCC-CCeEEeEEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEEeC
Q 026120 56 AVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEN 134 (243)
Q Consensus 56 ~~~i~a~diKkG~~I~~dG~py~V~~~~h~KpGK-G~A~vriklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~Dg 134 (243)
.+-+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|.+|+++++++.|+|+++++||||.||
T Consensus 28 t~pi~a~dlrkG~~I~idG~p~~Vve~~~~KpGKHG~A~vr~k~knl~TG~k~E~tf~s~~kve~~~ver~~~QyLY~dg 107 (167)
T 3er0_A 28 TYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDIDD 107 (167)
T ss_dssp CEEEETTTCCTTCEEEETTEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEESSSEEEECCCCEEEEECCCCTT
T ss_pred eEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCcCceEEEEEEEEcCCCCEEEEEEcCCCccccceEEEeeEEEEEEcC
Confidence 3568899999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CEEEEEe--CCCccccccCchhhhhhh-hccCCCCEEEEEEEC
Q 026120 135 DTAFVIE--SETFEQLEVPLDVFGKAG-AYLQEGMKVWLQLYD 174 (243)
Q Consensus 135 d~~~FMD--~etyEQi~l~~~~lgd~~-~~L~eg~~v~v~~~d 174 (243)
+.|+||| .+||||+.||++.+|++. .||+||++|.|++|.
T Consensus 108 ~~~~FMD~~~etyeqi~l~~~~lgd~i~~~l~eg~~v~V~~~~ 150 (167)
T 3er0_A 108 GFLSLMNMDGDTKDDVKAPEGELGDSLQTAFDEGKDLMVTIIS 150 (167)
T ss_dssp TTCCCCCSSSCCCSCCCCCCSSHHHHHHHTTSSCCCCEEEEEE
T ss_pred CEEEEEeCCCCeeEEEEcCHHHHHHHHHHHhhCCCEEEEEEEh
Confidence 9999999 899999999999999997 789999999999884
No 12
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=100.00 E-value=1.1e-35 Score=250.73 Aligned_cols=119 Identities=14% Similarity=0.175 Sum_probs=111.0
Q ss_pred eeeEEcCCCCCccEEEECCeEEEEEEeEEecCCC-CCeEEeEEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEEeC
Q 026120 56 AVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEN 134 (243)
Q Consensus 56 ~~~i~a~diKkG~~I~~dG~py~V~~~~h~KpGK-G~A~vriklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~Dg 134 (243)
..-+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|.+|++++++|.|.|++++|||||.|+
T Consensus 26 t~pi~~~dlrkG~~I~idG~P~~Vve~~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s~~kve~~~ver~~~QyLY~d~ 105 (167)
T 3hks_A 26 TYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITE 105 (167)
T ss_dssp EEEEEGGGCCTTSEEEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEECT
T ss_pred cEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCCCceEEEEEEEEcCCCCEEEEEEcCCCEEEeeeEEEEEEEEEEECC
Confidence 3568899999999999999999999999999999 999999999999999999999999999999999999999999965
Q ss_pred -CEEEEEeCCCcccc--ccCch-hhhhhh-hccCCCCEEEEEEEC
Q 026120 135 -DTAFVIESETFEQL--EVPLD-VFGKAG-AYLQEGMKVWLQLYD 174 (243)
Q Consensus 135 -d~~~FMD~etyEQi--~l~~~-~lgd~~-~~L~eg~~v~v~~~d 174 (243)
+.|+|||++||||+ .||.+ .|++.. .||+||++|.|.+|+
T Consensus 106 d~~~~fMD~etyeQ~~l~lp~~~~lg~~i~~~l~eG~~v~V~v~~ 150 (167)
T 3hks_A 106 DGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMS 150 (167)
T ss_dssp TSBEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCEEEEEcCCCceEEEEecCchHHHHHHHHHHhhCCCEEEEEEEe
Confidence 68999999999996 56677 888876 899999999998884
No 13
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Probab=99.59 E-value=1.6e-14 Score=122.11 Aligned_cols=117 Identities=14% Similarity=0.139 Sum_probs=98.7
Q ss_pred eeeEEcCCCCCccEEEECCeEEEEEEeEEe-cCCCCCeEEeEEEeeCCCCCeEEEEeCCC--------CcEEeeeEeeeE
Q 026120 56 AVKVNASHVRPGNVIEKSGKMYQVIDAEHK-QRGRGGAMMQMELRDIDTGNKVSLRFGTE--------EAVERVFVEDKS 126 (243)
Q Consensus 56 ~~~i~a~diKkG~~I~~dG~py~V~~~~h~-KpGKG~A~vriklknL~TG~k~e~tf~s~--------dkve~~~ver~~ 126 (243)
..-+++++||+|.+|.++|+||+|+++..+ ||||- ++...||+||+|.|...+++ ++++.|.++ +
T Consensus 32 T~p~q~~~LrkG~yv~IkGrPCKIveiStS~KtGKH----~ivaiDIFTgkK~edi~Pss~p~p~~~~hnm~VPvVk--~ 105 (176)
T 1khi_A 32 TVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQH----RYLGVDLFTKQLHEESSFVSNPAPSVVVQTMLGPVFK--Q 105 (176)
T ss_dssp EEEEEGGGCCTTCEEEETTEEEEEEEEEECTTTCCE----EEEEEETTTCCEEEEECCEECSSTTCCEEEEEEECCE--E
T ss_pred cEEEEhhheeeCCEEEECCeeeEEEEEEccCCCCce----EEEEEEccCCcEeEEeccccCCCcccccceeccceeE--E
Confidence 356789999999999999999999999999 89995 89999999999999999998 899999996 9
Q ss_pred EEEEEEeCCEEEEEeCCCcccccc--Cc-hhhhhh-hhccCCCCE---EEEEEECCEEE
Q 026120 127 FTCLYTENDTAFVIESETFEQLEV--PL-DVFGKA-GAYLQEGMK---VWLQLYDGRAL 178 (243)
Q Consensus 127 ~qylY~Dgd~~~FMD~etyEQi~l--~~-~~lgd~-~~~L~eg~~---v~v~~~dg~~i 178 (243)
+|++..+++.+.+||.++|+-..| |. ..|++. ...+.+|.+ |.++-..|+-.
T Consensus 106 yQlldI~dg~lsLMd~~G~~k~dl~lp~~~~l~~~i~~~f~~G~~~~~V~v~~amG~e~ 164 (176)
T 1khi_A 106 YRVLDMQDGSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGREM 164 (176)
T ss_dssp EEEEEEETTEEEEECTTCCEEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEEEETTEEE
T ss_pred EEEEEEcCCeEEEEeCCCCEEeeeEccchHHHHHHHHHHhhCCCceEEEEEEeECCcEE
Confidence 999999999999999988765554 43 224433 355688866 77777777743
No 14
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=60.62 E-value=19 Score=27.98 Aligned_cols=67 Identities=27% Similarity=0.409 Sum_probs=47.0
Q ss_pred eEEcCCCCCccEEEE-----CCeEEEEEEeEEe---cCCCCCeEEeEEEeeCCCCCeEEEEeCCCC-cEEeeeEeee
Q 026120 58 KVNASHVRPGNVIEK-----SGKMYQVIDAEHK---QRGRGGAMMQMELRDIDTGNKVSLRFGTEE-AVERVFVEDK 125 (243)
Q Consensus 58 ~i~a~diKkG~~I~~-----dG~py~V~~~~h~---KpGKG~A~vriklknL~TG~k~e~tf~s~d-kve~~~ver~ 125 (243)
..+..++++||+|.. +|...++..|+-+ +.|+|- .-.+.+|++..|.-+|.+|+-.. .++.+.+-++
T Consensus 13 ~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~-~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~ 88 (114)
T 3r8s_P 13 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGL-HSAFTVRKISNGEGVERVFQTHSPVVDSISVKRR 88 (114)
T ss_dssp CSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGG-GCEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred ccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCC-CeEEEEEEecCCccEEEEEecCCCccceEEEEEc
Confidence 456789999999975 4666666666542 234432 23577999999999999998643 4677776665
No 15
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=56.98 E-value=23 Score=28.73 Aligned_cols=67 Identities=18% Similarity=0.321 Sum_probs=46.1
Q ss_pred eEEcCCCCCccEEEE-----CCeEEEEEEeEEe---cCCCCCeEEeEEEeeCCCCCeEEEEeCCCC-cEEeeeEeee
Q 026120 58 KVNASHVRPGNVIEK-----SGKMYQVIDAEHK---QRGRGGAMMQMELRDIDTGNKVSLRFGTEE-AVERVFVEDK 125 (243)
Q Consensus 58 ~i~a~diKkG~~I~~-----dG~py~V~~~~h~---KpGKG~A~vriklknL~TG~k~e~tf~s~d-kve~~~ver~ 125 (243)
..+..++++||+|.. +|.-.++..|+-+ +.|+|- .-.+.+|++..|.-+|.+|+-.. .++.+.+-++
T Consensus 16 ~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl-~~tFtVRkis~gvGVEr~Fpl~SP~I~~IeVvrr 91 (146)
T 3v2d_T 16 RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGF-NTTFTVRKVSYGVGVERIFPLHSPLIQKIDIVQR 91 (146)
T ss_dssp CCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGG-GCEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred hccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCC-CeEEEEEEecCCccEEEEEecCCCccceEEEEec
Confidence 346789999999864 6665555555532 224432 23577999999999999998644 4677777665
No 16
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=56.73 E-value=12 Score=25.57 Aligned_cols=34 Identities=9% Similarity=0.189 Sum_probs=26.5
Q ss_pred CCccccccCchhhhhhhhccCCCCEEEEEEECCEEE
Q 026120 143 ETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRAL 178 (243)
Q Consensus 143 etyEQi~l~~~~lgd~~~~L~eg~~v~v~~~dg~~i 178 (243)
..--|+.||+++.. +. -|++|+.+.+...+|+.+
T Consensus 19 ~~kGqItIPkeiR~-~L-gi~~Gd~l~i~~~~~~Ii 52 (59)
T 1yfb_A 19 DELGRVVIPIELRR-TL-GIAEKDALEIYVDDEKII 52 (59)
T ss_dssp CTTCEEECCHHHHH-HT-TCCTTCEEEEEEETTEEE
T ss_pred CCCCEEEeCHHHHH-Hc-CCCCCCEEEEEEECCEEE
Confidence 46789999998753 33 389999999998888643
No 17
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=55.16 E-value=47 Score=25.02 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=40.5
Q ss_pred CCCCCccEEEE----CCeEEEEEEeEEe---cCCCCCeEEeEEEeeCCCCCeEEEEeCCCCc-EEeeeEee
Q 026120 62 SHVRPGNVIEK----SGKMYQVIDAEHK---QRGRGGAMMQMELRDIDTGNKVSLRFGTEEA-VERVFVED 124 (243)
Q Consensus 62 ~diKkG~~I~~----dG~py~V~~~~h~---KpGKG~A~vriklknL~TG~k~e~tf~s~dk-ve~~~ver 124 (243)
.+++.||+|.. .|...++..++-+ +.|+|- .-.+.+|++..|.-+|.+|+-... ++.+.+-+
T Consensus 2 P~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~-~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r 71 (98)
T 2ftc_K 2 PEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGL-GATFILRNVIEGQGVEICFELYNPRVQEIQVVK 71 (98)
T ss_pred CccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCC-CcEEEEEEeccCceEEEEEecCCCceeEEEEEE
Confidence 47889998864 4444555555532 234433 347889999999999999976433 55555554
No 18
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=51.08 E-value=42 Score=24.85 Aligned_cols=53 Identities=23% Similarity=0.278 Sum_probs=37.5
Q ss_pred CCCCEEEEEEECCEEEEEeCCCe-EEEEEEEecCCCCCcCCCCCceeEEeecCcEEEcccc
Q 026120 163 QEGMKVWLQLYDGRALSGSIPKR-VACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSY 222 (243)
Q Consensus 163 ~eg~~v~v~~~dg~~i~v~lP~~-V~l~V~et~p~~KGdTa~~~~K~A~LetG~~v~VP~F 222 (243)
-.||.|.+..-+ .-+++-+|.. ++=.|++.| +...-..-++|+||-+..+|..
T Consensus 19 ~~~MKVMIR~~~-~GLs~YVpKKDLEE~VVs~E------~~~~WGG~vtLaNGw~l~lp~l 72 (87)
T 2jn4_A 19 FQGMKVMIRKTA-TGHSAYVAKKDLEELIVEME------NPALWGGKVTLANGWQLELPAM 72 (87)
T ss_dssp ---CCEEEEECS-SCEEEEETTTTEEEEEEEES------SSSSCSSEEEETTSCEEECCCC
T ss_pred ecCCeEEEEeCC-CceEEEEeCCcchhheeeee------cccccCcEEEECCccEEEeCCC
Confidence 357999995443 3399999975 677778776 2333456899999999999875
No 19
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=49.55 E-value=5.6 Score=25.57 Aligned_cols=26 Identities=19% Similarity=0.465 Sum_probs=21.2
Q ss_pred CCCCccEEEECCeEEEEEEeEEecCC
Q 026120 63 HVRPGNVIEKSGKMYQVIDAEHKQRG 88 (243)
Q Consensus 63 diKkG~~I~~dG~py~V~~~~h~KpG 88 (243)
.-+.|+++.++|..|+++.-.+..+|
T Consensus 7 ~Y~~Gd~Vty~G~~Y~c~q~hts~~~ 32 (45)
T 1ed7_A 7 AYTAGQLVTYNGKTYKCLQPHTSLAG 32 (45)
T ss_dssp EECTTCCEEETTEEECBCSCEEECTT
T ss_pred eEcCCCEEEECCeEEEEEecCcCcCC
Confidence 34789999999999999987776543
No 20
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=46.42 E-value=4.3 Score=29.46 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=16.2
Q ss_pred EECCEEEEEeCCCeEEEE
Q 026120 172 LYDGRALSGSIPKRVACT 189 (243)
Q Consensus 172 ~~dg~~i~v~lP~~V~l~ 189 (243)
.|+|+|||.+||-.|.+.
T Consensus 41 ~wkGr~ISanlP~~V~F~ 58 (75)
T 1dj7_B 41 EWQGRPISANLPVLVKFE 58 (75)
T ss_dssp EETTEECCCSSCEEEEET
T ss_pred eccCcEecCCCCEEEEEe
Confidence 589999999999999883
No 21
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=44.05 E-value=23 Score=29.33 Aligned_cols=66 Identities=21% Similarity=0.328 Sum_probs=45.9
Q ss_pred EEcCCCCCccEEEE-----CCeEEEEEEeEEe---cCCCCCeEEeEEEeeCCCCCeEEEEeCCCCc-EEeeeEeee
Q 026120 59 VNASHVRPGNVIEK-----SGKMYQVIDAEHK---QRGRGGAMMQMELRDIDTGNKVSLRFGTEEA-VERVFVEDK 125 (243)
Q Consensus 59 i~a~diKkG~~I~~-----dG~py~V~~~~h~---KpGKG~A~vriklknL~TG~k~e~tf~s~dk-ve~~~ver~ 125 (243)
.+..+|++||+|.. +|.-.++.-|+-+ +.|+|- .-.+.+|++..|.=+|.+|+-... ++.+.+-++
T Consensus 22 ~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl-~sTFTVRkis~GvGVER~FplhSP~I~kIEVvrr 96 (166)
T 2zjr_M 22 RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGS-RKSFTVRKISFGEGVERVFPFASPLVNQVTIVER 96 (166)
T ss_dssp CCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGG-GCEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred cCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCC-CcEEEEEEecCCeeEEEEEecCCCccceEEEEec
Confidence 46789999999975 5554444444431 234433 346899999999999999986443 777777765
No 22
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=43.72 E-value=24 Score=31.21 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=22.7
Q ss_pred eEEeecCcEEEccc-cccCCCEEEEECCCCcee
Q 026120 208 RALLDNGVTVMVPS-YLEIGEEIFINPQDDSYI 239 (243)
Q Consensus 208 ~A~LetG~~v~VP~-FI~~Gd~I~VdT~~g~Yv 239 (243)
...+..|.+|.+|. -|++||.|+||..+++=+
T Consensus 138 ql~tHDGrti~~~dp~ik~~DTv~idl~~~kI~ 170 (265)
T 3iz6_D 138 YLNTYDGRTIRYPDPIIKANDTIKIDLETNKIV 170 (265)
T ss_dssp EEEETTSCCCBSCSSCCCTTCEEEECSSSCCEE
T ss_pred EEEeecceEEecCCCCcccCCEEEEECCCCcee
Confidence 56667777777764 577788888887777643
No 23
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=43.40 E-value=26 Score=26.57 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=34.2
Q ss_pred EEEeCCC----eEEEEEEEecCCCCCcCCCCCceeEEeecCcEEEc--c------ccccCCCEEEEECC
Q 026120 178 LSGSIPK----RVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMV--P------SYLEIGEEIFINPQ 234 (243)
Q Consensus 178 i~v~lP~----~V~l~V~et~p~~KGdTa~~~~K~A~LetG~~v~V--P------~FI~~Gd~I~VdT~ 234 (243)
..+.+|. .+..+|+++- .+..-.+.|+||.++.+ | ..|..||+|.|...
T Consensus 10 ~~~~~P~~~e~e~~g~V~~~l--------gn~~~~V~l~nG~~~la~i~GKmRk~IwI~~GD~VlVe~~ 70 (102)
T 1jt8_A 10 IRVRIPRKEENEILGIIEQML--------GASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPW 70 (102)
T ss_dssp CCCCCSCCSSCCEEEEEECSS--------CSSEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCB
T ss_pred eecccCCCCCCEEEEEEEEEc--------CCCEEEEEECCCCEEEEEEcccceeeEEecCCCEEEEEec
Confidence 3456665 4555666654 34567888999988855 3 45899999999754
No 24
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=42.39 E-value=25 Score=30.15 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=21.4
Q ss_pred eEEeecCcEEEcc-ccccCCCEEEEECCCCcee
Q 026120 208 RALLDNGVTVMVP-SYLEIGEEIFINPQDDSYI 239 (243)
Q Consensus 208 ~A~LetG~~v~VP-~FI~~Gd~I~VdT~~g~Yv 239 (243)
...+..|.+|..| +-|++||.|+||.++|+=+
T Consensus 102 ~l~~HDGrti~~pd~~ik~~Dtv~idl~~~kI~ 134 (213)
T 3kbg_A 102 QLGTHDGRTFITDDKSIKVGDVLAVSVPDMKIS 134 (213)
T ss_dssp EEEETTSCEEEECCTTCCTTCEEEEETTTCCEE
T ss_pred EEEecCccEEEcCCCCcccCCEEEEECCCCcee
Confidence 4556677777774 3577777777777776643
No 25
>1mvg_A Liver basic fatty acid binding protein; beta-barrel, calycin, ten antiparallel beta strands, helix- turn-helix motif, transport protein; NMR {Gallus gallus} SCOP: b.60.1.2 PDB: 1tvq_A 1tw4_A* 1zry_A 2jn3_A* 2k62_A*
Probab=42.23 E-value=81 Score=24.15 Aligned_cols=45 Identities=11% Similarity=0.201 Sum_probs=36.6
Q ss_pred eEEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEE-eCCEEEE
Q 026120 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (243)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~-Dgd~~~F 139 (243)
.+.++...+.+..+.+|.-|+.+|.-.++.+.++-++. |||.++-
T Consensus 46 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 91 (125)
T 1mvg_A 46 DFVVTSKTPRQTVTNSFTLGKEADITTMDGKKLKCTVHLANGKLVT 91 (125)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEETTTEEEEEEEEECSSEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEECCCCCEeeEEEEEECCEEEE
Confidence 45566667788899999999999999999888888887 7776654
No 26
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.43 E-value=14 Score=32.28 Aligned_cols=31 Identities=6% Similarity=0.150 Sum_probs=21.4
Q ss_pred eEEeecCcEEEcc----ccccCCCEEEEECCCCce
Q 026120 208 RALLDNGVTVMVP----SYLEIGEEIFINPQDDSY 238 (243)
Q Consensus 208 ~A~LetG~~v~VP----~FI~~Gd~I~VdT~~g~Y 238 (243)
...+..|.+|.+| +-|++||-|+||..+++=
T Consensus 139 ~l~~hDgr~i~~p~~~d~~ik~~Dtv~idl~~~kI 173 (243)
T 3j20_E 139 QLNFHDGTNHIVSIAEKDNYFTSYTVLMKVPEREI 173 (243)
T ss_dssp EECCSSCCCEECSSSSCSSCSSCEEEEEETTTTEE
T ss_pred EEEecCCceEEcccccCCCcccCCEEEEECCCCCe
Confidence 3556677777776 567777777777777654
No 27
>1ifc_A Intestinal fatty acid binding protein; lipid-binding protein; 1.19A {Rattus norvegicus} SCOP: b.60.1.2 PDB: 1ael_A 1icm_A* 1ifb_A 1ure_A* 2ifb_A* 3akn_A* 1icn_A* 1t8v_A 1dc9_A 1a57_A 1kzx_A 1kzw_A 3akm_A* 3ifb_A 1sa8_A
Probab=38.69 E-value=84 Score=24.23 Aligned_cols=45 Identities=9% Similarity=0.171 Sum_probs=35.5
Q ss_pred eEEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEE-eCCEEEE
Q 026120 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (243)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~-Dgd~~~F 139 (243)
.+.++...+.+..+.+|.-|+.+|.-.++.+.++-++. |||.++-
T Consensus 47 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 92 (132)
T 1ifc_A 47 KFTVKESSNFRNIDVVFELGVDFAYSLADGTELTGTWTMEGNKLVG 92 (132)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 35555667778899999999999999888888887776 7776544
No 28
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta} SCOP: b.60.1.2
Probab=38.57 E-value=1e+02 Score=23.83 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=36.5
Q ss_pred eEEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEE-eCCEEEE
Q 026120 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (243)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~-Dgd~~~F 139 (243)
.+.++...+.+..+.+|.-|+.+|.-.++.+.++-++. |||.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 93 (132)
T 1mdc_A 48 SYSNTSTGGGGAKTVSFKSGVEFDDVIGAGDSVKSMYTVDGNVVTH 93 (132)
T ss_dssp EEEEEEESTTCCEEEEECTTCCEEEEETTTEEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceeEEEEeCCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 35566667788899999999999999999888888877 7776655
No 29
>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides farinae} SCOP: b.60.1.2
Probab=37.66 E-value=1.3e+02 Score=23.09 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=36.8
Q ss_pred eEEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEE-eC-CEEEE
Q 026120 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 139 (243)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~-Dg-d~~~F 139 (243)
.+.++...+.+..+.+|.-|+.+|.-.++.+.++-++. || |.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~~kLv~ 94 (131)
T 2a0a_A 48 QYIFRSLSTFKNTEAKFKLGEEFEEDRADGKRVKTVIQKEGDNKFVQ 94 (131)
T ss_dssp CEEEEECCTTSCEEEEECSSCCEEEEETTTEEEEEEEEEETTTEEEE
T ss_pred EEEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEEEeCCCEEEE
Confidence 35666777888999999999999999999888887777 77 66655
No 30
>3ppt_A Sodium-calcium exchanger; fatty acid transporter, lipid binding proteins, squid nerve, regulatory factor, beta-sandwich, fatty acid; HET: PAM; 1.28A {Loligo pealei} SCOP: b.60.1.0 PDB: 3pp6_A*
Probab=37.65 E-value=1.1e+02 Score=23.60 Aligned_cols=45 Identities=4% Similarity=0.132 Sum_probs=35.8
Q ss_pred eEEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEE-eCCEEEE
Q 026120 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (243)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~-Dgd~~~F 139 (243)
.+.++...+.+..+.+|.-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 48 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 93 (133)
T 3ppt_A 48 SWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTCKIDGNAMIQ 93 (133)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEeCCccEEEEEECCCcEEeEcCCCCEEEEEEEEECCEEEE
Confidence 45566677788899999999999998888888887776 7776554
No 31
>4a1y_A Myelin P2 protein; transport; HET: PLM; 1.20A {Homo sapiens} PDB: 2wut_A* 4a1h_A* 1pmp_A* 1yiv_A*
Probab=37.59 E-value=70 Score=24.86 Aligned_cols=44 Identities=11% Similarity=0.189 Sum_probs=33.7
Q ss_pred EEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEE-eCCEEEE
Q 026120 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (243)
Q Consensus 96 iklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~-Dgd~~~F 139 (243)
+.++...+.+..+.+|.-|+.+|.-.++.+.++-++. ||+.++.
T Consensus 51 ~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 95 (133)
T 4a1y_A 51 ITIRTESTFKNTEISFQLGQEFEETTADNRKTKSIVTLQRGSLNQ 95 (133)
T ss_dssp EEEEEEETTEEEEEEECTTBCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEecCCccEEEEEEcCCcEEEEcCCCCEEEEEEEEcCCEEEE
Confidence 3344455667788899999999998888888888876 7777654
No 32
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=36.89 E-value=25 Score=31.08 Aligned_cols=32 Identities=13% Similarity=0.298 Sum_probs=21.4
Q ss_pred eEEeecCcEEEccc-cccCCCEEEEECCCCcee
Q 026120 208 RALLDNGVTVMVPS-YLEIGEEIFINPQDDSYI 239 (243)
Q Consensus 208 ~A~LetG~~v~VP~-FI~~Gd~I~VdT~~g~Yv 239 (243)
...+..|.+|.+|. -|++||.|+||..+++=+
T Consensus 138 ql~tHDGrti~~~dp~ik~~Dtv~idl~~~kI~ 170 (261)
T 3u5c_E 138 YVVTHDGRTIRYPDPNIKVNDTVKIDLASGKIT 170 (261)
T ss_dssp EEEETTTEEEESCCSSCCTTCEEEECSSSSCEE
T ss_pred EEEEecceEEecCCCCcccCCEEEEECCCCcee
Confidence 45566777776654 577777777777776543
No 33
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel, lipid binding protein; HET: PLM; 2.05A {Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Probab=36.41 E-value=63 Score=25.07 Aligned_cols=45 Identities=7% Similarity=0.104 Sum_probs=36.5
Q ss_pred eEEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEE-eCCEEEE
Q 026120 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (243)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~-Dgd~~~F 139 (243)
++.++...+.+..+.+|+-|+.+|.-.++.+.++-++. |||.++-
T Consensus 51 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 96 (135)
T 1b56_A 51 NLTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQ 96 (135)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEECCCcEEEECCCCCeEEEEEEEECCEEEE
Confidence 35666677788899999999999999999888888777 7776553
No 34
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomic protein structure initiative; 1.57A {Enterococcus faecalis} SCOP: b.161.1.1
Probab=36.11 E-value=33 Score=27.03 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=20.0
Q ss_pred CCCCCccEEEECCeEEEEEEe
Q 026120 62 SHVRPGNVIEKSGKMYQVIDA 82 (243)
Q Consensus 62 ~diKkG~~I~~dG~py~V~~~ 82 (243)
.+|++|+.+.++++-|.|..+
T Consensus 53 ~~i~~Gd~l~i~~~~Y~ItaV 73 (129)
T 2f9h_A 53 VTLAEGDHLKIGDTNYTITKV 73 (129)
T ss_dssp CCCCTTCEEEETTEEEEEEEE
T ss_pred CCcCCCCEEEECCEEEEEEEE
Confidence 589999999999999999988
No 35
>1o8v_A Fatty acid binding protein homolog; lipid binding protein, hydatid disease, fatty-acid transport; HET: PLM; 1.60A {Echinococcus granulosus} SCOP: b.60.1.2
Probab=36.05 E-value=68 Score=24.86 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=37.0
Q ss_pred eEEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEE-eCCEEEE
Q 026120 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (243)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~-Dgd~~~F 139 (243)
.+.++...+.+..+.+|+-|+.+|.-.++.+.++-++. |||.++-
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1o8v_A 50 KYKMRSESTFKTTECSFKLGEKFKEVTPDSREVASLITVENGVMKH 95 (134)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 45666777888999999999999999999888887777 7776554
No 36
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=35.21 E-value=16 Score=23.89 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=24.6
Q ss_pred CCccccccCchhhhhhhhccCCCCEEEEEEECCE
Q 026120 143 ETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGR 176 (243)
Q Consensus 143 etyEQi~l~~~~lgd~~~~L~eg~~v~v~~~dg~ 176 (243)
..--|+.||++... +. =|++|+.+.+...+|.
T Consensus 9 ~~kgqi~IPk~ir~-~l-gi~~Gd~v~i~~~~~~ 40 (53)
T 2l66_A 9 SRNYQVTIPAKVRQ-KF-QIKEGDLVKVTFDESE 40 (53)
T ss_dssp CSSSCBCCCHHHHH-HS-CCCTTCEEEEEECSSS
T ss_pred CCCCEEEeCHHHHH-Hc-CcCCCCEEEEEEECCE
Confidence 45679999998763 33 3799999999887775
No 37
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=35.20 E-value=51 Score=29.02 Aligned_cols=30 Identities=13% Similarity=0.303 Sum_probs=16.2
Q ss_pred eEEeecCcEEEcc-ccccCCCEEEEECCCCc
Q 026120 208 RALLDNGVTVMVP-SYLEIGEEIFINPQDDS 237 (243)
Q Consensus 208 ~A~LetG~~v~VP-~FI~~Gd~I~VdT~~g~ 237 (243)
...+..|.+|..| +-|++||-|+||.++++
T Consensus 140 ql~~HDGrti~~~d~~ik~~Dtv~idl~~~k 170 (260)
T 2xzm_W 140 YIVTHDSRTIRFPNPEIKIGDTLKYDLVNNK 170 (260)
T ss_dssp EEEETTTEEEESCCSSCCTTBEEEEETTTTE
T ss_pred EEEecCCceEeccCCcCccCCeEEEeCCCCc
Confidence 3444555555554 24556666666665554
No 38
>1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET: OLA; 1.85A {Schistosoma mansoni} SCOP: b.60.1.2 PDB: 1vyg_A* 2poa_A
Probab=35.08 E-value=1e+02 Score=23.81 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=34.0
Q ss_pred EEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEE--eCCEEEE
Q 026120 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT--ENDTAFV 139 (243)
Q Consensus 96 iklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~--Dgd~~~F 139 (243)
+.++...+.+..+.+|+-|+.+|.-.++.+.++-++. |||.++-
T Consensus 51 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~~eg~kLv~ 96 (135)
T 1vyf_A 51 MTMLTESTFKNLSCTFKFGEEFDEKTSDGRNVKSVVEKNSESKLTQ 96 (135)
T ss_dssp EEEEEECSSCCEEEEECTTCCEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred EEEEEEcCCceEEEEEECCCCEEEECCCCCEEEEEEEEccCCEEEE
Confidence 4455666777888999999999998888887776665 7776654
No 39
>3q6l_A Fatty acid-binding protein, adipocyte; lipid chaperone, lipid binding protein; 1.40A {Homo sapiens} PDB: 2q9s_A* 2qm9_A*
Probab=34.92 E-value=1.2e+02 Score=24.09 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=35.7
Q ss_pred eEEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEE-eCCEEEE
Q 026120 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (243)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~-Dgd~~~F 139 (243)
.+.++...+.+..+.+|.-|+.+|.-..+-+.++-++. |||.++-
T Consensus 69 ~~tikt~st~kt~~~~F~lGeEfee~t~dGrk~Ks~vt~eg~kLv~ 114 (152)
T 3q6l_A 69 VITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVH 114 (152)
T ss_dssp EEEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEeccccEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEEE
Confidence 35566667778889999999999998888888887776 7777653
No 40
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=34.69 E-value=70 Score=23.47 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=33.2
Q ss_pred ceeeEEcCCCCCccEEEECCeEEEEEEeEEec---CCCC--CeEEeEEEeeCCCCCeEEEEeCC
Q 026120 55 RAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQ---RGRG--GAMMQMELRDIDTGNKVSLRFGT 113 (243)
Q Consensus 55 R~~~i~a~diKkG~~I~~dG~py~V~~~~h~K---pGKG--~A~vriklknL~TG~k~e~tf~s 113 (243)
++.+..+++|++|+.+.. .++|.+..-.+ ..+| ..+..+.+.| .||...-.-|..
T Consensus 4 ~~~~~~I~~L~~g~~v~i---~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D-~TG~I~~t~w~~ 63 (115)
T 2k50_A 4 EHRMDTISKLEEGAETPV---TGRVMKISSPRTFTTRKGREGKLANVIIAD-DTGELRAVFWTE 63 (115)
T ss_dssp TTCCCCTTTCCTTCEEEE---EEEEEEECCCEECCCTTSSCCEEEEEEEEE-TTEEEEEEEETT
T ss_pred ccceEEHHHCCCCCEeEE---EEEEEECCCceEEEcCCCCEEEEEEEEEEe-CCCeEEEEEeCc
Confidence 344566899999998755 55666662222 2235 5677788888 677443334443
No 41
>3p6d_A Fatty acid-binding protein, adipocyte; lipocalin, beta barrel, lipid BI protein; HET: ZGB; 1.06A {Homo sapiens} SCOP: b.60.1.2 PDB: 3p6c_A* 3p6e_A* 3p6f_A* 3p6g_A* 3p6h_A* 3rzy_A 2hnx_A* 3fr4_A* 2nnq_A* 1tow_A* 1tou_A* 3fr2_A* 3fr5_A* 1adl_A* 1alb_A 1lib_A 1lic_A* 1lid_A* 1lie_A* 1lif_A* ...
Probab=34.25 E-value=1.3e+02 Score=23.39 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=35.5
Q ss_pred eEEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEE-eCCEEEE
Q 026120 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (243)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~-Dgd~~~F 139 (243)
.+.++...+.+..+.+|.-|+.+|.-..+-+.++-++. ||+.++-
T Consensus 56 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 101 (139)
T 3p6d_A 56 VITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVH 101 (139)
T ss_dssp EEEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEeccccEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEEE
Confidence 35566667778889999999999998888888887776 7776653
No 42
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Probab=33.71 E-value=83 Score=24.19 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=35.5
Q ss_pred eEEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEE-eCCEEEE
Q 026120 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (243)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~-Dgd~~~F 139 (243)
++.++...+.+..+.+|+-|+.++.-.++.+.++-++. |||.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~kLv~ 93 (131)
T 1fdq_A 48 KVVIRTLSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVH 93 (131)
T ss_dssp EEEEEEECSSCBCCEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEecCCccEEEEEeCCCceEEECCCCCEEEEEEEEECCEEEE
Confidence 34555666777888899999999999999888888777 7776654
No 43
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=33.63 E-value=34 Score=24.08 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=24.1
Q ss_pred cccccCchhhhhhhhccCCCCEEEEEEECCEEE
Q 026120 146 EQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRAL 178 (243)
Q Consensus 146 EQi~l~~~~lgd~~~~L~eg~~v~v~~~dg~~i 178 (243)
-++.||++... .. =|.+|.+|.+...+|..+
T Consensus 13 ~~v~iPk~~~~-~l-gl~~gd~v~i~~~~~~ii 43 (82)
T 1mvf_D 13 PAVRIPATLMQ-AL-NLNIDDEVKIDLVDGKLI 43 (82)
T ss_dssp EEEECCHHHHH-HT-TCCTTCBEEEEEETTEEE
T ss_pred cEEEECHHHHH-Hc-CCCCCCEEEEEEECCEEE
Confidence 58899998763 33 378999999988888754
No 44
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=33.56 E-value=86 Score=23.82 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=23.8
Q ss_pred CCccEEEECCeEEEEEEeEEecCCCCCeEEeEEE
Q 026120 65 RPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMEL 98 (243)
Q Consensus 65 KkG~~I~~dG~py~V~~~~h~KpGKG~A~vrikl 98 (243)
|+|+.+.++|+-|.|..+++.- |.-.++++-
T Consensus 65 ~r~D~Vv~~Gk~y~Vtr~~~~n---gk~~i~LE~ 95 (102)
T 2pp6_A 65 RRGDRVVLRGSEFTVTRIRRFN---GKPQLTLEE 95 (102)
T ss_dssp CTTCEEEETTEEEEEEEEEEET---TEEEEEEEE
T ss_pred CCCCEEEEcCcEEEEEEEEEEC---CcEEEEEEe
Confidence 5799999999999999999763 444455543
No 45
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.16 E-value=87 Score=23.89 Aligned_cols=30 Identities=17% Similarity=0.452 Sum_probs=20.4
Q ss_pred CceeEEeecCcEEEc--c------ccccCCCEEEEECC
Q 026120 205 RYRRALLDNGVTVMV--P------SYLEIGEEIFINPQ 234 (243)
Q Consensus 205 ~~K~A~LetG~~v~V--P------~FI~~Gd~I~VdT~ 234 (243)
..=.+.|+||.++.+ | ..|..||+|.|...
T Consensus 28 ~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~ 65 (111)
T 2dgy_A 28 NLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPI 65 (111)
T ss_dssp SEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEec
Confidence 344566667766644 2 46889999999865
No 46
>4a60_A Fatty acid-binding protein 9 testis lipid-binding protein, TLBP, testis-type fatty...; transport protein; 1.53A {Homo sapiens} PDB: 3nr3_A*
Probab=32.56 E-value=1.2e+02 Score=24.36 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=34.5
Q ss_pred EEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEE-eCCEEEE
Q 026120 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (243)
Q Consensus 96 iklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~-Dgd~~~F 139 (243)
+.++...+.+..+.+|.-|+.+|.-..+.+.++-++. ||+.++-
T Consensus 72 ~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~eg~kLv~ 116 (154)
T 4a60_A 72 MTIRTESSFQDTKISFKLGEEFDETTADNRKVKSTITLENGSMIH 116 (154)
T ss_dssp EEEEEEETTEEEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEcCCceEEEEEECCCcEEeEcCCCCEEEEEEEEECCEEEE
Confidence 4455566677888999999999998888888887776 7777654
No 47
>1k0h_A Gpfii; twisted beta-sandwich, viral protein; NMR {Enterobacteria phage lambda} SCOP: b.106.1.2 PDB: 2kx4_A
Probab=32.50 E-value=13 Score=28.77 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=20.2
Q ss_pred cCCCCCccEEEECCeEEEEEEeE
Q 026120 61 ASHVRPGNVIEKSGKMYQVIDAE 83 (243)
Q Consensus 61 a~diKkG~~I~~dG~py~V~~~~ 83 (243)
+..++.|+.|.++|+.|.|.+++
T Consensus 72 ~~~~~~gD~v~i~g~~y~V~~v~ 94 (117)
T 1k0h_A 72 VRQLRRGDTLTIGEENFWVDRVS 94 (117)
T ss_dssp TTTCCSSCEEEETTTCEEBCCCC
T ss_pred cCCCCCCCEEEECCeEEEEeeec
Confidence 56789999999999999998853
No 48
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Probab=32.36 E-value=70 Score=24.47 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=33.9
Q ss_pred EEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEE-eCCEEEE
Q 026120 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (243)
Q Consensus 96 iklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~-Dgd~~~F 139 (243)
+.++...+.+..+.+|.-|+.+|.-.++.+.++-++. |||.++-
T Consensus 47 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 91 (125)
T 1p6p_A 47 FVVTSKTPKQTHSNSFTVGKESEITSMDGKKIKVTVQLEGGKLIC 91 (125)
T ss_dssp EEEEEEETTEEEEEEEETTSCEEECTTTSCCEEEEEEECSSEEEE
T ss_pred EEEEEEcCCeEEEEEEECCCcEEEEcCCCCEEEEEEEEECCEEEE
Confidence 3444555667788899999999999999888888887 7776655
No 49
>2qo4_A Liver-basic fatty acid binding protein; liver bIle acid-binding protein, BABP, fatty acid-binding PR FABP, cholic acid cholate, bIle acid; HET: CHD; 1.50A {Danio rerio} PDB: 2qo6_A* 2qo5_A* 2ftb_A* 2ft9_A*
Probab=31.83 E-value=72 Score=24.42 Aligned_cols=45 Identities=13% Similarity=0.294 Sum_probs=35.1
Q ss_pred EEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEE-eCCEEEEE
Q 026120 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFVI 140 (243)
Q Consensus 96 iklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~-Dgd~~~FM 140 (243)
+.++...+.+..+.+|.-|+.+|.-.++.+.++-++. |||.++-.
T Consensus 48 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~kLv~~ 93 (126)
T 2qo4_A 48 FTITSKTPGKTVTNSFTIGKEAEITTMDGKKLKCIVKLDGGKLVCR 93 (126)
T ss_dssp EEEEEEETTEEEEEEEETTBEEEEECTTSCEEEEECEEETTEEEEE
T ss_pred EEEEEEcCCceEEEEeeCCCcEEEECCCCCEeEEEEEEECCEEEEE
Confidence 4444555677888999999999999999888888777 78876653
No 50
>1ggl_A Protein (cellular retinol-binding protein III); carrier, transport protein; 2.31A {Homo sapiens} SCOP: b.60.1.2
Probab=31.75 E-value=1.2e+02 Score=23.41 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=35.2
Q ss_pred EEEeeCCCCCeEEEEeCCCCcEEeee--EeeeEEEEEEE-eCCEEEE
Q 026120 96 MELRDIDTGNKVSLRFGTEEAVERVF--VEDKSFTCLYT-ENDTAFV 139 (243)
Q Consensus 96 iklknL~TG~k~e~tf~s~dkve~~~--ver~~~qylY~-Dgd~~~F 139 (243)
+.++...+.+..+.+|.-|+.+|.-. ++.+.++-++. |||.++-
T Consensus 49 ~~ikt~s~~k~~~~~F~lGeEfee~t~~~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1ggl_A 49 MTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVC 95 (134)
T ss_dssp EEEEEECSSCCEEEEEETTSCEEEEETTTTSEEEEEEEEECSSSEEE
T ss_pred EEEEEEcCCceEEEEeeCCCcEEEEccCCCCcEeeeEEEEECCEEEE
Confidence 45556677788999999999999998 88888887777 6676555
No 51
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol binding protein II, lipid-binding protein, X-RAY, cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A* 1kqw_A* 1kqx_A
Probab=31.59 E-value=1e+02 Score=24.08 Aligned_cols=45 Identities=13% Similarity=0.216 Sum_probs=35.1
Q ss_pred eEEEeeCCCCCeEEEEeCCCCcEEe--eeEeeeEEEEEEE-eCCEEEE
Q 026120 95 QMELRDIDTGNKVSLRFGTEEAVER--VFVEDKSFTCLYT-ENDTAFV 139 (243)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~--~~ver~~~qylY~-Dgd~~~F 139 (243)
.+.++...+.+..+.+|.-|+.+|. -.++.+.++-++. |||.++.
T Consensus 52 ~~tikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt~eg~kLv~ 99 (141)
T 2rcq_A 52 NFKTKTTSTFRNYDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVC 99 (141)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCeEEeeeecCCCCEEEEEEEEeCCEEEE
Confidence 3445566677889999999999999 8888887777776 7786665
No 52
>1lpj_A Retinol-binding protein IV, cellular; cellular retinol-binding protein, CRBP, vitamin A, ILBPS, transport protein; 2.00A {Homo sapiens} SCOP: b.60.1.2
Probab=29.05 E-value=94 Score=23.96 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=34.8
Q ss_pred eEEEeeCCCCCeEEEEeCCCCcEEeee--EeeeEEEEEEE-eCCEEEE
Q 026120 95 QMELRDIDTGNKVSLRFGTEEAVERVF--VEDKSFTCLYT-ENDTAFV 139 (243)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~~~--ver~~~qylY~-Dgd~~~F 139 (243)
++.++...+.+..+.+|+-|+.+|.-. ++.+.++-++. |||.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeefee~t~~~dgrk~ks~~t~eg~kLv~ 95 (133)
T 1lpj_A 48 SFTIHTNSSLRNYFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTC 95 (133)
T ss_dssp EEEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEeCCceeEEEeeCCCceEEEccCCCCCEEEEEEEEECCEEEE
Confidence 345566677788889999999999887 88777777776 7776655
No 53
>1crb_A Cellular retinol binding protein; cellular lipophilic transport protein; HET: RTL; 2.10A {Rattus rattus} SCOP: b.60.1.2 PDB: 1mx7_A 1mx8_A* 1jbh_A 1kgl_A*
Probab=28.67 E-value=76 Score=24.58 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=35.9
Q ss_pred eEEEeeCCCCCeEEEEeCCCCcEEe--eeEeeeEEEEEEE-eCCEEEE
Q 026120 95 QMELRDIDTGNKVSLRFGTEEAVER--VFVEDKSFTCLYT-ENDTAFV 139 (243)
Q Consensus 95 riklknL~TG~k~e~tf~s~dkve~--~~ver~~~qylY~-Dgd~~~F 139 (243)
.+.++...+.+..+.+|.-|+.+|. -.++.+.++-++. |||.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1crb_A 48 HMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGDKLQC 95 (134)
T ss_dssp EEEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEecCCceEEEEEeCCCeeeeeeecCCCCEEEEEEEEECCEEEE
Confidence 3556677778889999999999999 8888888877776 7776654
No 54
>1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid); 2.20A {Schistocerca gregaria} SCOP: b.60.1.2 PDB: 2flj_A*
Probab=28.56 E-value=94 Score=24.00 Aligned_cols=44 Identities=9% Similarity=0.166 Sum_probs=35.0
Q ss_pred EEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEE-eC-CEEEE
Q 026120 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 139 (243)
Q Consensus 96 iklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~-Dg-d~~~F 139 (243)
+.++...+.+..+.+|.-|+.+|.-.++.+.++-++. || |.++-
T Consensus 51 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~~kLv~ 96 (133)
T 1ftp_A 51 FKLTSKTAIKNTEFTFKLGEEFDEETLDGRKVKSTITQDGPNKLVH 96 (133)
T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEECSSSEEEE
T ss_pred EEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEEEeCCCEEEE
Confidence 4556667778899999999999999898888887777 77 65554
No 55
>1eal_A Gastrotropin, ileal lipid binding protein; intracellular lipid binding protein, bIle acid binding, ileal epithelium, fatty acid binding protein; NMR {Sus scrofa} SCOP: b.60.1.2 PDB: 1eio_A* 1o1u_A 1o1v_A*
Probab=27.94 E-value=1.2e+02 Score=23.12 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=34.0
Q ss_pred EEEeeC-CCCCeEEEEeCCCCcEEeeeEeeeEEEEEEE-eCCEEEE
Q 026120 96 MELRDI-DTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (243)
Q Consensus 96 iklknL-~TG~k~e~tf~s~dkve~~~ver~~~qylY~-Dgd~~~F 139 (243)
+.++.. .+.+..+.+|+-|+.+|.-.++.+.++-++. |||.++-
T Consensus 47 ~~ikt~~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 92 (127)
T 1eal_A 47 FTWSQQYPGGHSITNTFTIGKECDIETIGGKKFKATVQMEGGKVVV 92 (127)
T ss_dssp EEEEEECSSSCEEEEEEESSSCEEEECSSSCEEEECCEECSSEEEE
T ss_pred EEEEEEECCCceEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 444455 5667888899999999999999888888777 7776655
No 56
>2f73_A L-FABP, fatty acid-binding protein, liver; structural genomics, structural genomics consortium, SGC, lipid binding protein; 2.50A {Homo sapiens} SCOP: b.60.1.2
Probab=27.85 E-value=1e+02 Score=24.53 Aligned_cols=44 Identities=9% Similarity=0.105 Sum_probs=34.6
Q ss_pred EEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEE-eC-CEEEE
Q 026120 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 139 (243)
Q Consensus 96 iklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~-Dg-d~~~F 139 (243)
+.++...+.+..+.+|.-|+.+|.-.++.+.++-++. || +.++-
T Consensus 70 ~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~egd~kLv~ 115 (149)
T 2f73_A 70 FKFTITAGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDNKLVT 115 (149)
T ss_dssp EEEEEEETTEEEEEEEETTSEEEEECSSSCEEEEECEEETTTEEEE
T ss_pred EEEEEEeCCeEEEEEEeCCCcEEEEcCCCCEEEEEEEEeCCCcEEE
Confidence 4455556677888999999999999999888888877 77 66655
No 57
>2kca_A Bacteriophage SPP1 complete nucleotide sequence; beta-barrel, virus; NMR {Bacillus phage SPP1}
Probab=27.03 E-value=1.4e+02 Score=21.35 Aligned_cols=38 Identities=8% Similarity=0.054 Sum_probs=28.3
Q ss_pred CCCCCccEEEECCeEEEEEEe-EEecCCCCCeEEeEEEeeC
Q 026120 62 SHVRPGNVIEKSGKMYQVIDA-EHKQRGRGGAMMQMELRDI 101 (243)
Q Consensus 62 ~diKkG~~I~~dG~py~V~~~-~h~KpGKG~A~vriklknL 101 (243)
.+|..++.|.++|+.|.|..+ ... ..++-++.+.++-.
T Consensus 66 ~~i~~~~ri~~~g~~y~I~~v~~~~--~~~~~~l~i~~~~~ 104 (109)
T 2kca_A 66 DRIDKKMRVIYRGKIVTFIGDPVDL--SGLQEITRIKGKED 104 (109)
T ss_dssp CCSSSSEEEEETTEEEEEEEEEEEC--CTTTCEEEEEEECC
T ss_pred CCCCCccEEEECCEEEEEEEeccCc--ccCcEEEEEEEEEc
Confidence 588999999999999999988 544 23344666666543
No 58
>3rsw_A Fatty acid-binding protein, heart; lipid carrier, molecular chaperone, heart fatty acid binding type 2 diabetes, atherosclerosis, chaperone; 2.60A {Homo sapiens} PDB: 1g5w_A 1hmr_A* 1hms_A* 1hmt_A* 2hmb_A* 1bwy_A
Probab=26.76 E-value=1.2e+02 Score=24.42 Aligned_cols=43 Identities=12% Similarity=0.229 Sum_probs=34.6
Q ss_pred EEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEE-eCCEEE
Q 026120 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAF 138 (243)
Q Consensus 96 iklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~-Dgd~~~ 138 (243)
+.++...+.+..+.+|.-|+.+|.-..+-+.++-++. |||.++
T Consensus 75 ~tikt~St~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~eg~kLv 118 (158)
T 3rsw_A 75 LTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLV 118 (158)
T ss_dssp EEEEEECSSCEECCEEETTBCEEEECSSCCEEEEEEEESSSEEE
T ss_pred EEEEEEccCceEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEE
Confidence 4456667778888999999999998888888888776 667665
No 59
>2lba_A BABP protein; ileal bIle acid binding protein, lipid binding protein; HET: CHO; NMR {Gallus gallus}
Probab=24.76 E-value=85 Score=24.46 Aligned_cols=44 Identities=9% Similarity=0.166 Sum_probs=34.8
Q ss_pred EEEeeC-CCCCeEEEEeCCCCcEEeeeEeeeEEEEEEE-eCCEEEE
Q 026120 96 MELRDI-DTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (243)
Q Consensus 96 iklknL-~TG~k~e~tf~s~dkve~~~ver~~~qylY~-Dgd~~~F 139 (243)
+.++.. .+.+..+.+|.-|+.+|.-.++.+.++-++. |||.++.
T Consensus 52 ~tikt~~s~~kt~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 97 (136)
T 2lba_A 52 FTWTQHFPGGRTTTNSFTIDKEADMETMGGRKFKATVKMEGGKIVA 97 (136)
T ss_dssp EEEEEECTTSCCEEEEEETTEEEEEECTTCCEEEEEEEESSSCEEE
T ss_pred EEEEEEeCCCceEEEEEeCCCcEEEECCCCCEeeEEEEEECCEEEE
Confidence 445555 6677888999999999999999888888887 7776655
No 60
>2g7b_A Cellular retinoic acid-binding protein 2; crabpii, retinoids, beta barrel, crystallography, X-RAY, high resolution, schiff base; HET: AZE; 1.18A {Homo sapiens} PDB: 3d97_A* 3fa8_A 3i17_B 3fa7_A* 3fa9_A 3d95_A 3cwk_A 3f8a_A* 3fep_A* 3fek_B 3fa6_A 1bm5_A 1xca_A 3fel_A* 3f9d_A* 3cr6_A* 3fen_A 1blr_A 1cbq_A* 1cbs_A* ...
Probab=24.29 E-value=1.5e+02 Score=22.95 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=33.2
Q ss_pred EEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEE-eC-CEEEE
Q 026120 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 139 (243)
Q Consensus 96 iklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~-Dg-d~~~F 139 (243)
+.++...+.+..+.+|.-|+.+|.-.++-+.++-++. || +.++-
T Consensus 50 ~tikt~s~~kt~~~~F~lGeEfee~t~dgrk~ks~~t~egd~kLv~ 95 (137)
T 2g7b_A 50 FYIKTSTTVRTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVC 95 (137)
T ss_dssp EEEEEEETTEEEEEEEETTSCEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred EEEEEEECCeEEEEEEecCCceEEECCCCCEEEEEEEEeCCCeEEE
Confidence 4455555667788899999999999888888887776 66 55554
No 61
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=24.13 E-value=2.1e+02 Score=22.82 Aligned_cols=43 Identities=12% Similarity=0.212 Sum_probs=28.2
Q ss_pred eEEEEEEEecCCCCCcCCCCCceeEEeecCcEEEc--c------ccccCCCEEEEECCC
Q 026120 185 RVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMV--P------SYLEIGEEIFINPQD 235 (243)
Q Consensus 185 ~V~l~V~et~p~~KGdTa~~~~K~A~LetG~~v~V--P------~FI~~Gd~I~VdT~~ 235 (243)
.+..+|+++-| +..=.+.|++|.++.+ | ..|..||+|.|....
T Consensus 32 e~~g~V~e~lg--------n~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~~~ 82 (143)
T 1d7q_A 32 QEYAQVIKMLG--------NGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRD 82 (143)
T ss_dssp EEEEEEEEECS--------SSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEECSS
T ss_pred EEEEEEEEEcC--------CCEEEEEeCCCCEEEEEecccceeeEEecCCCEEEEeecc
Confidence 45566666643 3455677777777644 2 467889999997654
No 62
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=23.43 E-value=1.7e+02 Score=23.05 Aligned_cols=87 Identities=14% Similarity=0.144 Sum_probs=40.5
Q ss_pred eeEEcCCCCCccEEEECCeEEEEEEeEEecCCCCCeEEeEEEeeCCCCCeEEE-EeCCCCcEEeeeEeeeEEEEEEEeCC
Q 026120 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSL-RFGTEEAVERVFVEDKSFTCLYTEND 135 (243)
Q Consensus 57 ~~i~a~diKkG~~I~~dG~py~V~~~~h~KpGKG~A~vriklknL~TG~k~e~-tf~s~dkve~~~ver~~~qylY~Dgd 135 (243)
..+-...++.|++|.-..+.=+ .....++|. -+-|+||-.|..+.. -.+.++.=.-+.=.-..+|.+.+|++
T Consensus 25 yIlAp~gl~~Gd~I~s~~~~g~--~a~~i~~GN-----~lpL~~iP~Gt~IhNIE~~pG~gg~laRsAGt~a~ii~ke~~ 97 (136)
T 2ftc_B 25 WIIATENMQAGDTILNSNHIGR--MAVAAREGD-----AHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNG 97 (136)
T ss_pred EEEeecCCcCCCEEEECCcccc--cccccCcCc-----EEEecccCCCCEEEEEeccCCCCcEEEEeCCCeEEEEEecCC
Confidence 5556667777777765221000 000123333 455666666665544 23444443344444445555555543
Q ss_pred EEEEEeCCCccccccC
Q 026120 136 TAFVIESETFEQLEVP 151 (243)
Q Consensus 136 ~~~FMD~etyEQi~l~ 151 (243)
|+.+-.-+-|.-.++
T Consensus 98 -~~~vrLPSGe~r~v~ 112 (136)
T 2ftc_B 98 -TAIIQLPSKRQMQVL 112 (136)
T ss_pred -EEEEECCCCCeEEEC
Confidence 444444444444444
No 63
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=23.33 E-value=1.2e+02 Score=23.52 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=22.4
Q ss_pred eeeEEcCCCCCccEEE-ECC-----eEEEEEEeEEe
Q 026120 56 AVKVNASHVRPGNVIE-KSG-----KMYQVIDAEHK 85 (243)
Q Consensus 56 ~~~i~a~diKkG~~I~-~dG-----~py~V~~~~h~ 85 (243)
...+.|.+|++|+.|. .+| ++.+|++++.+
T Consensus 84 ~~~v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~~ 119 (145)
T 1at0_A 84 LTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSV 119 (145)
T ss_dssp EEEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEE
T ss_pred EEEEEHHHCcCCCEEEEecCCCCCEEEEEEEEEEEE
Confidence 4678899999999885 454 46777777653
No 64
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=23.11 E-value=39 Score=26.50 Aligned_cols=21 Identities=14% Similarity=0.127 Sum_probs=17.5
Q ss_pred cccCCCEEEEECCCCceeecc
Q 026120 222 YLEIGEEIFINPQDDSYIGRA 242 (243)
Q Consensus 222 FI~~Gd~I~VdT~~g~Yv~R~ 242 (243)
=|+.||+|+|.++.|+..-||
T Consensus 66 GI~dGd~V~V~s~~G~v~~~a 86 (146)
T 2ki8_A 66 GLQEGDRVKVKTEFGEVVVFA 86 (146)
T ss_dssp TCCTTCEEEEECSSCEEEEEE
T ss_pred CCCCCCEEEEEeCCcEEEEEE
Confidence 477899999999999876665
No 65
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=21.69 E-value=1.4e+02 Score=23.18 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=31.0
Q ss_pred eeeEEcCCCCCccEEEE---CCe--EEEEEEeEEecCCCCCeEEeEEEe
Q 026120 56 AVKVNASHVRPGNVIEK---SGK--MYQVIDAEHKQRGRGGAMMQMELR 99 (243)
Q Consensus 56 ~~~i~a~diKkG~~I~~---dG~--py~V~~~~h~KpGKG~A~vriklk 99 (243)
|..+.+.+|+.|+.|.- +|+ +..|+.+-|..|..-..|++++..
T Consensus 13 G~~k~i~eL~~GD~Vla~d~~G~~~~s~V~~~~~r~~~~~~~f~~I~t~ 61 (145)
T 1at0_A 13 GVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTD 61 (145)
T ss_dssp SCEEEGGGCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEEEEET
T ss_pred CCEeEHHHcCCCCEEEEECCCCCEEEEEEEEEEeeCCCcceeEEEEEEC
Confidence 34567899999999863 575 357888887766444567777654
No 66
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=21.61 E-value=1.7e+02 Score=19.62 Aligned_cols=44 Identities=16% Similarity=0.115 Sum_probs=30.4
Q ss_pred eCCEEEEEeCCCccccccCchhhhhh-hhccCCCCEEEEEEECCE
Q 026120 133 ENDTAFVIESETFEQLEVPLDVFGKA-GAYLQEGMKVWLQLYDGR 176 (243)
Q Consensus 133 Dgd~~~FMD~etyEQi~l~~~~lgd~-~~~L~eg~~v~v~~~dg~ 176 (243)
+...|=|..++.-+++-+....+... ..-|.+|+.|.....++.
T Consensus 10 ~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~ 54 (66)
T 1g6p_A 10 SKKGYGFITKDEGGDVFVHWSAIEMEGFKTLKEGQVVEFEIQEGK 54 (66)
T ss_dssp TTTTEEEEEETTSCBCBBCSSSSCCSSCCCCCSSSEEEEEEECSS
T ss_pred CCCCEEEEecCCCceEEEEhHHccccCCCCCCCCCEEEEEEEECC
Confidence 34456666665558888887776543 367999999998876653
No 67
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=20.72 E-value=41 Score=25.96 Aligned_cols=31 Identities=10% Similarity=0.092 Sum_probs=22.3
Q ss_pred EeecCcEE--EccccccCCCEEEEECCCCceee
Q 026120 210 LLDNGVTV--MVPSYLEIGEEIFINPQDDSYIG 240 (243)
Q Consensus 210 ~LetG~~v--~VP~FI~~Gd~I~VdT~~g~Yv~ 240 (243)
|+=||..| ..|.-++.||.|++-..+.+|+=
T Consensus 96 T~vNg~ri~~~~~~~L~~GD~I~~G~str~yvl 128 (130)
T 4h87_A 96 TFLNKTRIPPRTYCRVHVGHVVRFGGSTRLFIL 128 (130)
T ss_dssp EEETTEECCTTCCEECCTTCEEEETTCSEEEEE
T ss_pred eEECCEECCCCceeECCCCCEEEECCceEEEEE
Confidence 34467666 34666889999999877778863
No 68
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=20.66 E-value=1.5e+02 Score=21.10 Aligned_cols=32 Identities=9% Similarity=0.193 Sum_probs=24.0
Q ss_pred EcCCCCCccEEEE-----CCeEEEEEEeEEecCCCCC
Q 026120 60 NASHVRPGNVIEK-----SGKMYQVIDAEHKQRGRGG 91 (243)
Q Consensus 60 ~a~diKkG~~I~~-----dG~py~V~~~~h~KpGKG~ 91 (243)
..+.|+.|+.|.+ +|.-|.|++++...|++|+
T Consensus 44 ~l~~lk~Gd~V~F~~~~~~~g~~~it~i~~~~~~~~~ 80 (82)
T 2l55_A 44 LPQGLKAGDRVAFSFRLDPHGMATLVTVAPQVQTAGA 80 (82)
T ss_dssp CCSSCSTTCEEEEEEEEETTTEEEEEEEEECCSSCCC
T ss_pred HhhcCCCCCEEEEEEEECCCCeEEEEEEEecCCCCCC
Confidence 3688999999874 4426999999887776654
No 69
>3vg7_A Fatty acid-binding protein, liver; lfabp, S-SAD, copper kalpha, palmitic acid, lipid binding PR; HET: PLM; 1.44A {Homo sapiens} PDB: 3b2i_A* 3b2j_A* 3b2k_A* 3b2l_A* 3stk_A* 3stm_X* 3stn_A 3vg2_A* 3vg3_A* 3vg4_A* 3vg5_A* 3vg6_A* 3b2h_A* 2py1_A 2l67_A 2l68_A 2lkk_A* 2ju3_A 2ju7_A 2ju8_A* ...
Probab=20.57 E-value=1.7e+02 Score=22.56 Aligned_cols=44 Identities=9% Similarity=0.105 Sum_probs=33.1
Q ss_pred EEEeeCCCCCeEEEEeCCCCcEEeeeEeeeEEEEEEE-eC-CEEEE
Q 026120 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 139 (243)
Q Consensus 96 iklknL~TG~k~e~tf~s~dkve~~~ver~~~qylY~-Dg-d~~~F 139 (243)
+.++...+.+..+.+|.-|+.+|.-.++-+.++-++. || +.++-
T Consensus 51 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~egd~kLv~ 96 (132)
T 3vg7_A 51 FKFTITAGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDNKLVT 96 (132)
T ss_dssp EEEEEEETTEEEEEEEETTSEEEEECTTSCEEEEECEESSTTEEEE
T ss_pred EEEEEEEcCceEEEEEECCCcEEeECCCCCEEEEEEEEecCCeEEE
Confidence 3444555666788899999999999888888888876 66 55554
No 70
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=20.42 E-value=1.1e+02 Score=23.87 Aligned_cols=87 Identities=15% Similarity=0.276 Sum_probs=43.0
Q ss_pred CCCeEEeEEEeeCCCCCeEEEEeCCCCcEEe----------eeEeeeEEEEEEEeCCEEEEEeCCCccccccCchhhhhh
Q 026120 89 RGGAMMQMELRDIDTGNKVSLRFGTEEAVER----------VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKA 158 (243)
Q Consensus 89 KG~A~vriklknL~TG~k~e~tf~s~dkve~----------~~ver~~~qylY~Dgd~~~FMD~etyEQi~l~~~~lgd~ 158 (243)
-....+++.+|. .+|+.+......++.|.. +..++ |-|+..|. .+-|..+-.++.|..+..=..
T Consensus 16 ~~~~~m~i~Vk~-~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~---QrL~~~g~--~L~d~~tL~~~~i~~~~~l~l 89 (172)
T 3u30_A 16 PRGSHMQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ---QRLIFAGK--QLEDGRTLSDYNIQKESTLHL 89 (172)
T ss_dssp ---CCEEEEEEE-TTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGG---EEEEETTE--ECCTTCBTGGGTCCTTCEEEE
T ss_pred CCCCcEEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHH---EEEEECCc--cccccCCHhHcCCcccceeee
Confidence 345567888887 468888888888887653 22222 44444442 333444555555443211111
Q ss_pred hhccCCCCEEEEEEECCEEEEEe
Q 026120 159 GAYLQEGMKVWLQLYDGRALSGS 181 (243)
Q Consensus 159 ~~~L~eg~~v~v~~~dg~~i~v~ 181 (243)
..-+..|+.+.|...+|+.+.++
T Consensus 90 ~~~~~gg~~i~Vk~~~g~~~~l~ 112 (172)
T 3u30_A 90 VLRLRGGMQIFVKTLTGKTITLE 112 (172)
T ss_dssp EECCCCCEEEEEEESSCCEEEEE
T ss_pred eecccccccceeecccCcceeEE
Confidence 11233445555555555544443
No 71
>3elx_A Ileal bIle acid-binding protein; ileal bIle acid-bindign protein, zebrafish, cholic acid, LIP binding, transport, lipid binding protein; 1.60A {Danio rerio} SCOP: b.60.1.0 PDB: 3elz_A* 3em0_A*
Probab=20.36 E-value=1.2e+02 Score=23.70 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=33.5
Q ss_pred EEEeeCCC-CCeEEEEeCCCCcEEeeeEeeeEEEEEEE-eCCEEEE
Q 026120 96 MELRDIDT-GNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (243)
Q Consensus 96 iklknL~T-G~k~e~tf~s~dkve~~~ver~~~qylY~-Dgd~~~F 139 (243)
+.++...+ .+..+.+|.-|+.+|.-.++-+.++-++. ||+.++-
T Consensus 51 ~tikt~s~~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 96 (138)
T 3elx_A 51 FTWTQYYPNNHVVTNKFIVGKESDMETVGGKKFKGIVSMEGGKLTI 96 (138)
T ss_dssp EEEEEEEGGGEEEEEEEETTSCEEEECTTSCEEEECCEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEEE
Confidence 34444555 66778899999999998888888887776 7777664
Done!