BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026121
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GIJ|A Chain A, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Sulfate
pdb|4GIJ|B Chain B, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Sulfate
pdb|4GIJ|C Chain C, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Sulfate
pdb|4GIK|A Chain A, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR R5p Adduct
pdb|4GIK|B Chain B, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR R5p Adduct
pdb|4GIK|C Chain C, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR R5p Adduct
pdb|4GIL|A Chain A, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR Pseudouridine 5'-Phosphate Adduct
pdb|4GIL|B Chain B, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR Pseudouridine 5'-Phosphate Adduct
pdb|4GIL|C Chain C, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR Pseudouridine 5'-Phosphate Adduct
Length = 335
Score = 219 bits (559), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 119/229 (51%), Positives = 146/229 (63%)
Query: 3 LSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGG 62
LS EE+E L + G K +RRD+ VVA NGATTV++TM A++ GI VF TGGIGG
Sbjct: 99 LSKEEIELLGREGHNVTKVSRRDLPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGG 158
Query: 63 VHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPA 122
VHR EHT DIS+DL EL T V VV AG KSILD+ T EYLET GV + Y+T PA
Sbjct: 159 VHRGAEHTFDISADLQELANTNVTVVCAGAKSILDLGLTTEYLETFGVPLIGYQTKALPA 218
Query: 123 FFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSA 182
FF TS V R+DS + AR + V + L GLV+ PIP + A I +AI A
Sbjct: 219 FFCRTSPFDVSIRLDSASEIARAMVVKWQSGLNGGLVVANPIPEQFAMPEHTINAAIDQA 278
Query: 183 LREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKIS 231
+ EA + + G TPFLLARV ELTGG SL SNI LV NNA++ ++I+
Sbjct: 279 VAEAEAQGVIGKESTPFLLARVAELTGGDSLKSNIQLVFNNAILASEIA 327
>pdb|4GIM|A Chain A, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Pseudouridine 5'-Phosphate
pdb|4GIM|B Chain B, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Pseudouridine 5'-Phosphate
pdb|4GIM|C Chain C, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Pseudouridine 5'-Phosphate
Length = 335
Score = 217 bits (553), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 118/229 (51%), Positives = 145/229 (63%)
Query: 3 LSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGG 62
LS EE+E L + G K +RRD+ VVA NGATTV++TM A++ GI VF TGGIGG
Sbjct: 99 LSKEEIELLGREGHNVTKVSRRDLPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGG 158
Query: 63 VHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPA 122
VHR EHT DIS+DL EL T V VV AG SILD+ T EYLET GV + Y+T PA
Sbjct: 159 VHRGAEHTFDISADLQELANTNVTVVCAGAASILDLGLTTEYLETFGVPLIGYQTKALPA 218
Query: 123 FFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSA 182
FF TS V R+DS + AR + V + L GLV+ PIP + A I +AI A
Sbjct: 219 FFCRTSPFDVSIRLDSASEIARAMVVKWQSGLNGGLVVANPIPEQFAMPEHTINAAIDQA 278
Query: 183 LREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKIS 231
+ EA + + G TPFLLARV ELTGG SL SNI LV NNA++ ++I+
Sbjct: 279 VAEAEAQGVIGKESTPFLLARVAELTGGDSLKSNIQLVFNNAILASEIA 327
>pdb|1VKM|A Chain A, Crystal Structure Of An Indigoidine Synthase A (Idga)-Like
Protein (Tm1464) From Thermotoga Maritima Msb8 At 1.90 A
Resolution
pdb|1VKM|B Chain B, Crystal Structure Of An Indigoidine Synthase A (Idga)-Like
Protein (Tm1464) From Thermotoga Maritima Msb8 At 1.90 A
Resolution
pdb|1VKM|C Chain C, Crystal Structure Of An Indigoidine Synthase A (Idga)-Like
Protein (Tm1464) From Thermotoga Maritima Msb8 At 1.90 A
Resolution
pdb|1VKM|D Chain D, Crystal Structure Of An Indigoidine Synthase A (Idga)-Like
Protein (Tm1464) From Thermotoga Maritima Msb8 At 1.90 A
Resolution
pdb|1VKM|E Chain E, Crystal Structure Of An Indigoidine Synthase A (Idga)-Like
Protein (Tm1464) From Thermotoga Maritima Msb8 At 1.90 A
Resolution
pdb|1VKM|F Chain F, Crystal Structure Of An Indigoidine Synthase A (Idga)-Like
Protein (Tm1464) From Thermotoga Maritima Msb8 At 1.90 A
Resolution
Length = 297
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 127/219 (57%), Gaps = 9/219 (4%)
Query: 18 AQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDL 77
A K R+I VVA N ATTVSAT+F + +GI V VTGG GGVH +D+S DL
Sbjct: 87 ADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVH---PGRVDVSQDL 143
Query: 78 TELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVD 137
TE + +VS+GIKSILD+ T E LET + + ++TNEFP FF+ SG +VP R++
Sbjct: 144 TEXSSSRAVLVSSGIKSILDVEATFEXLETLEIPLVGFRTNEFPLFFSRKSGRRVP-RIE 202
Query: 138 SPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAET 197
+ E+ ++ + + +L L + P+P E+ IE L E E + G T
Sbjct: 203 NVEEVLKIYESXKEXELEKTLXVLNPVPEEYEIPHDEIER-----LLEKIELEVEGKEVT 257
Query: 198 PFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQ 236
PFLL ++ E T G +L +N+AL++ N + +I+V L +
Sbjct: 258 PFLLKKLVEXTNGRTLKANLALLEENVKLAGEIAVKLKR 296
>pdb|4EX8|A Chain A, Crystal Structure Of The Prealnumycin C-glycosynthase Alna
pdb|4EX9|A Chain A, Crystal Structure Of The Prealnumycin C-glycosynthase Alna
In Complex With Ribulose 5-phosphate
Length = 316
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 125/221 (56%), Gaps = 1/221 (0%)
Query: 20 KTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTE 79
K + RDI +A G GATTV+ T+ A GI VF T GIGGVHR GE T+DIS DL +
Sbjct: 96 KISARDIGGALAGGGLGATTVAGTIVIAERAGIQVFTTAGIGGVHRRGEDTLDISPDLLQ 155
Query: 80 LGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSP 139
+T + VVS G KSILD T EYLET GV V Y+T++ AF + V R+D
Sbjct: 156 FRKTKMTVVSGGAKSILDHRLTAEYLETAGVPVYGYRTDKLAAFVVREADVPV-TRMDDL 214
Query: 140 EDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPF 199
AR + + ++ +++ PI + A ++E+AI AL + ++ I GNA +P+
Sbjct: 215 HTAARAAEAHWQVNGPGTVLLTSPIDEQDAVDEAIVEAAIAEALAQCDQEGIVGNAVSPY 274
Query: 200 LLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQQ 240
L+ + +GG+ + +L+ + A + + S AL+ ++ +
Sbjct: 275 LMKALARASGGMLPKAGRSLLLSTARVAGEFSAALSAVQAE 315
>pdb|1YBH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide
Chlorimuron Ethyl
pdb|1YHY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Metsulfuron Methyl
pdb|1YHZ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Chlorsulfuron
pdb|1YI0|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Sulfometuron Methyl
pdb|1YI1|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Tribenuron Methyl
pdb|1Z8N|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With An Imidazolinone Herbicide,
Imazaquin
Length = 590
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 33/122 (27%)
Query: 30 VATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVS 89
+AT G GAT + + + A + +P+ G V R I +D + TP+ V+
Sbjct: 80 IATSGPGATNLVSGLADALLDSVPLVAI--TGQVPRRM-----IGTDAFQ--ETPIVEVT 130
Query: 90 AGIK-------SILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDC 142
I + DIPR +E AFF TSG P VD P+D
Sbjct: 131 RSITKHNYLVMDVEDIPRIIEE-----------------AFFLATSGRPGPVLVDVPKDI 173
Query: 143 AR 144
+
Sbjct: 174 QQ 175
>pdb|3E9Y|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron
pdb|3EA4|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron-Ester
Length = 584
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 33/122 (27%)
Query: 30 VATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVS 89
+AT G GAT + + + A + +P+ G V R I +D + TP+ V+
Sbjct: 79 IATSGPGATNLVSGLADALLDSVPLVAI--TGQVPRRM-----IGTDAFQ--ETPIVEVT 129
Query: 90 AGIK-------SILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDC 142
I + DIPR +E AFF TSG P VD P+D
Sbjct: 130 RSITKHNYLVMDVEDIPRIIEE-----------------AFFLATSGRPGPVLVDVPKDI 172
Query: 143 AR 144
+
Sbjct: 173 QQ 174
>pdb|4AF0|B Chain B, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 37 ATTVSATMFFASMVGIPVFVTGGIGGV 63
T V A FAS GIP GGIG +
Sbjct: 370 GTAVYAVAEFASRFGIPCIADGGIGNI 396
>pdb|4AF0|A Chain A, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 38 TTVSATMFFASMVGIPVFVTGGIGGV 63
T V A FAS GIP GGIG +
Sbjct: 371 TAVYAVAEFASRFGIPCIADGGIGNI 396
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,396,987
Number of Sequences: 62578
Number of extensions: 252139
Number of successful extensions: 676
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 665
Number of HSP's gapped (non-prelim): 14
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)