Query 026121
Match_columns 243
No_of_seqs 151 out of 472
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 04:01:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04227 Indigoidine_A: Indigo 100.0 3E-107 8E-112 742.4 17.8 234 1-234 60-293 (293)
2 COG2313 IndA Uncharacterized e 100.0 4E-105 8E-110 719.0 23.6 236 1-237 74-309 (310)
3 KOG3009 Predicted carbohydrate 100.0 1.8E-77 4E-82 573.0 14.3 240 1-240 89-330 (614)
4 TIGR02643 T_phosphoryl thymidi 91.5 5.4 0.00012 39.6 13.7 182 2-200 49-253 (437)
5 PRK05820 deoA thymidine phosph 90.9 4.1 9E-05 40.4 12.3 174 2-191 50-233 (440)
6 TIGR02644 Y_phosphoryl pyrimid 90.2 4.7 0.0001 39.6 11.8 175 2-191 47-228 (405)
7 PRK04350 thymidine phosphoryla 89.0 4.1 8.9E-05 41.0 10.7 185 2-204 127-330 (490)
8 cd03109 DTBS Dethiobiotin synt 87.7 0.89 1.9E-05 36.8 4.3 84 35-119 10-106 (134)
9 PRK00188 trpD anthranilate pho 86.1 3.8 8.3E-05 38.5 8.2 149 2-185 49-209 (339)
10 PRK06078 pyrimidine-nucleoside 84.1 17 0.00036 36.2 11.8 166 2-187 49-225 (434)
11 PRK08508 biotin synthase; Prov 84.1 33 0.00072 31.2 13.8 159 3-222 100-269 (279)
12 TIGR02645 ARCH_P_rylase putati 83.6 11 0.00024 38.1 10.4 180 2-200 132-331 (493)
13 PF08659 KR: KR domain; Inter 83.3 2.7 5.8E-05 35.2 5.3 105 54-181 3-111 (181)
14 TIGR01245 trpD anthranilate ph 83.3 6.8 0.00015 36.8 8.4 150 2-186 43-206 (330)
15 PF13500 AAA_26: AAA domain; P 81.4 1.6 3.5E-05 36.8 3.3 65 50-115 98-163 (199)
16 PF06057 VirJ: Bacterial virul 76.9 2.8 6.1E-05 37.4 3.5 25 102-128 22-46 (192)
17 TIGR03327 AMP_phos AMP phospho 75.5 31 0.00066 35.0 10.6 177 2-200 133-332 (500)
18 PRK06256 biotin synthase; Vali 75.0 69 0.0015 29.4 12.2 164 3-222 150-319 (336)
19 cd00377 ICL_PEPM Members of th 73.7 68 0.0015 28.8 11.7 157 42-207 20-194 (243)
20 PRK12374 putative dithiobiotin 73.7 3.4 7.4E-05 36.2 3.2 66 50-116 104-170 (231)
21 PRK13947 shikimate kinase; Pro 72.0 8.9 0.00019 31.1 5.1 77 33-112 10-98 (171)
22 TIGR03649 ergot_EASG ergot alk 71.4 31 0.00066 30.2 8.6 12 53-64 1-12 (285)
23 PF07302 AroM: AroM protein; 71.4 27 0.00059 31.7 8.4 116 93-217 71-210 (221)
24 PLN02617 imidazole glycerol ph 67.4 11 0.00023 38.3 5.4 65 37-112 468-536 (538)
25 COG2513 PrpB PEP phosphonomuta 65.8 29 0.00062 33.0 7.6 149 42-198 29-190 (289)
26 COG0707 MurG UDP-N-acetylgluco 63.6 22 0.00048 34.0 6.6 151 51-225 183-336 (357)
27 COG2101 SPT15 TATA-box binding 63.5 3.5 7.5E-05 36.7 1.1 26 87-112 64-93 (185)
28 PRK12744 short chain dehydroge 63.4 52 0.0011 28.1 8.3 75 50-148 7-82 (257)
29 PRK10481 hypothetical protein; 62.9 1.2E+02 0.0026 27.5 11.4 122 90-219 71-216 (224)
30 cd04728 ThiG Thiazole synthase 62.7 58 0.0012 30.3 8.8 51 132-189 180-230 (248)
31 PRK00208 thiG thiazole synthas 62.7 59 0.0013 30.3 8.9 75 88-189 155-230 (250)
32 PTZ00254 40S ribosomal protein 61.8 18 0.00039 33.5 5.4 75 94-191 47-142 (249)
33 TIGR00347 bioD dethiobiotin sy 61.1 8.7 0.00019 31.2 3.0 64 50-115 98-163 (166)
34 PRK14607 bifunctional glutamin 60.8 37 0.0008 34.0 7.9 107 2-124 241-353 (534)
35 PLN02974 adenosylmethionine-8- 60.8 27 0.00059 37.2 7.2 83 51-148 184-267 (817)
36 cd06167 LabA_like LabA_like pr 58.6 17 0.00038 28.9 4.3 74 40-118 54-132 (149)
37 TIGR02822 adh_fam_2 zinc-bindi 57.7 62 0.0013 29.4 8.2 71 41-115 179-255 (329)
38 TIGR02319 CPEP_Pphonmut carbox 56.9 85 0.0019 29.5 9.1 159 42-210 27-202 (294)
39 cd04937 ACT_AKi-DapG-BS_2 ACT 56.5 32 0.00069 24.1 4.9 45 84-138 3-48 (64)
40 PTZ00137 2-Cys peroxiredoxin; 56.3 21 0.00046 32.9 4.9 112 76-191 91-232 (261)
41 PRK00090 bioD dithiobiotin syn 56.2 14 0.0003 31.6 3.5 63 51-115 103-167 (222)
42 COG1625 Fe-S oxidoreductase, r 56.2 17 0.00037 36.0 4.5 134 86-232 181-328 (414)
43 cd01948 EAL EAL domain. This d 56.0 24 0.00052 29.5 4.8 57 1-58 153-209 (240)
44 TIGR00433 bioB biotin syntheta 55.0 1.6E+02 0.0034 26.3 12.4 164 3-222 121-293 (296)
45 PRK09856 fructoselysine 3-epim 54.9 74 0.0016 27.9 7.9 92 97-192 48-144 (275)
46 cd00659 Topo_IB_C DNA topoisom 54.6 1E+02 0.0023 27.7 8.9 68 124-199 90-157 (218)
47 COG0282 ackA Acetate kinase [E 54.4 27 0.00058 34.5 5.5 58 2-61 256-330 (396)
48 PRK15108 biotin synthase; Prov 54.1 1.1E+02 0.0025 28.8 9.5 78 44-127 85-164 (345)
49 PF01261 AP_endonuc_2: Xylose 53.2 95 0.0021 25.1 7.9 91 98-191 29-126 (213)
50 PRK07523 gluconate 5-dehydroge 53.1 1E+02 0.0022 26.2 8.4 87 49-163 8-95 (255)
51 TIGR01303 IMP_DH_rel_1 IMP deh 53.0 24 0.00053 35.1 5.1 54 2-61 274-338 (475)
52 PRK11320 prpB 2-methylisocitra 52.6 2E+02 0.0043 27.1 10.7 157 42-207 28-200 (292)
53 PRK12311 rpsB 30S ribosomal pr 52.3 60 0.0013 31.1 7.4 27 153-192 151-177 (326)
54 TIGR00315 cdhB CO dehydrogenas 50.3 13 0.00029 32.0 2.4 56 60-115 6-61 (162)
55 TIGR01012 Sa_S2_E_A ribosomal 50.2 24 0.00053 31.4 4.2 76 93-191 37-132 (196)
56 PLN02641 anthranilate phosphor 49.5 41 0.00088 32.2 5.8 107 2-124 49-160 (343)
57 PRK04020 rps2P 30S ribosomal p 49.3 67 0.0014 28.8 6.8 77 93-192 43-139 (204)
58 PRK08591 acetyl-CoA carboxylas 48.9 1.2E+02 0.0025 29.0 8.8 96 85-187 75-189 (451)
59 PRK06278 cobyrinic acid a,c-di 47.7 20 0.00044 35.8 3.6 71 51-121 317-394 (476)
60 PRK01077 cobyrinic acid a,c-di 47.0 1.4E+02 0.003 29.1 9.2 67 51-118 81-152 (451)
61 TIGR00735 hisF imidazoleglycer 46.7 20 0.00044 32.0 3.2 60 42-112 190-253 (254)
62 PRK09427 bifunctional indole-3 46.6 2.2E+02 0.0048 28.4 10.5 168 4-207 168-350 (454)
63 COG3946 VirJ Type IV secretory 46.6 25 0.00055 35.2 4.0 70 85-162 262-333 (456)
64 TIGR01081 mpl UDP-N-acetylmura 46.5 47 0.001 31.8 5.7 69 36-115 8-90 (448)
65 cd04920 ACT_AKiii-DAPDC_2 ACT 46.4 32 0.00069 24.3 3.6 36 85-120 3-39 (63)
66 PRK09880 L-idonate 5-dehydroge 45.7 95 0.0021 28.1 7.4 69 42-112 184-263 (343)
67 PF05944 Phage_term_smal: Phag 45.7 40 0.00088 28.2 4.6 45 163-211 80-126 (132)
68 KOG4166 Thiamine pyrophosphate 45.5 59 0.0013 33.3 6.4 143 29-209 158-327 (675)
69 cd04509 PBP1_ABC_transporter_G 45.3 1.6E+02 0.0035 24.5 8.2 16 102-117 84-99 (299)
70 PF05589 DUF768: Protein of un 45.1 22 0.00047 26.6 2.6 32 164-195 17-48 (64)
71 PRK00726 murG undecaprenyldiph 45.0 60 0.0013 29.2 6.0 49 79-132 208-258 (357)
72 COG2266 GTP:adenosylcobinamide 45.0 18 0.00039 32.0 2.5 42 42-91 54-95 (177)
73 COG0547 TrpD Anthranilate phos 44.9 53 0.0011 31.6 5.8 106 2-123 50-161 (338)
74 PRK13896 cobyrinic acid a,c-di 44.6 25 0.00054 34.7 3.6 61 52-115 78-144 (433)
75 PF14246 TetR_C_7: AefR-like t 44.6 9 0.0002 25.9 0.5 47 134-184 3-49 (55)
76 PRK09522 bifunctional glutamin 44.6 94 0.002 31.5 7.7 106 2-123 246-357 (531)
77 cd08233 butanediol_DH_like (2R 44.3 1.5E+02 0.0034 26.6 8.5 76 38-116 183-272 (351)
78 TIGR00379 cobB cobyrinic acid 43.9 2.8E+02 0.006 27.2 10.7 67 50-120 76-150 (449)
79 PF00591 Glycos_transf_3: Glyc 43.5 24 0.00053 31.4 3.2 116 31-162 8-148 (252)
80 TIGR02317 prpB methylisocitrat 43.0 2.3E+02 0.0051 26.5 9.6 135 42-187 24-172 (285)
81 cd02811 IDI-2_FMN Isopentenyl- 43.0 47 0.001 31.1 5.1 88 25-119 178-287 (326)
82 TIGR01007 eps_fam capsular exo 42.9 23 0.0005 29.8 2.8 38 79-116 149-186 (204)
83 PF10096 DUF2334: Uncharacteri 42.4 1.1E+02 0.0025 27.4 7.3 94 95-196 15-126 (243)
84 TIGR03527 selenium_YedF seleni 42.4 47 0.001 29.3 4.7 72 77-151 114-190 (194)
85 cd06268 PBP1_ABC_transporter_L 42.1 2E+02 0.0044 23.9 9.3 20 98-117 79-98 (298)
86 PF00205 TPP_enzyme_M: Thiamin 42.0 26 0.00057 27.8 2.8 51 75-125 5-61 (137)
87 TIGR02320 PEP_mutase phosphoen 41.9 3E+02 0.0064 25.7 11.8 158 42-208 20-205 (285)
88 PRK05354 arginine decarboxylas 41.2 2.3E+02 0.0049 29.6 10.0 115 85-236 147-279 (634)
89 TIGR03811 tyr_de_CO2_Ent tyros 41.2 58 0.0013 33.6 5.8 58 115-184 217-274 (608)
90 PRK07178 pyruvate carboxylase 41.0 1.1E+02 0.0024 29.9 7.4 83 99-188 88-189 (472)
91 PF13692 Glyco_trans_1_4: Glyc 40.7 19 0.00041 27.4 1.8 67 76-148 63-131 (135)
92 PF00106 adh_short: short chai 40.7 1.2E+02 0.0026 23.8 6.4 89 54-166 3-92 (167)
93 PRK12595 bifunctional 3-deoxy- 40.6 3.4E+02 0.0073 26.2 10.5 47 77-123 218-269 (360)
94 cd01533 4RHOD_Repeat_2 Member 39.5 98 0.0021 23.4 5.6 77 3-111 12-92 (109)
95 PF04430 DUF498: Protein of un 39.5 34 0.00075 26.9 3.1 42 75-116 42-87 (110)
96 PRK09240 thiH thiamine biosynt 39.3 2.6E+02 0.0057 26.6 9.6 182 2-222 160-354 (371)
97 TIGR03279 cyano_FeS_chp putati 39.0 1.9E+02 0.004 29.0 8.7 185 3-223 126-357 (433)
98 PRK02083 imidazole glycerol ph 38.5 45 0.00097 29.6 4.0 17 96-112 235-251 (253)
99 TIGR03699 mena_SCO4550 menaqui 38.2 1.9E+02 0.0042 26.7 8.3 123 2-156 139-268 (340)
100 PRK06245 cofG FO synthase subu 38.1 2.4E+02 0.0051 26.1 8.8 73 135-208 39-125 (336)
101 PRK07677 short chain dehydroge 38.1 2.1E+02 0.0046 24.2 8.0 13 53-65 3-15 (252)
102 smart00052 EAL Putative diguan 38.1 63 0.0014 26.9 4.7 56 2-58 155-210 (241)
103 TIGR03551 F420_cofH 7,8-dideme 38.1 1.1E+02 0.0024 28.5 6.7 166 4-212 140-315 (343)
104 PRK07890 short chain dehydroge 38.0 2.5E+02 0.0053 23.7 8.5 15 51-65 5-19 (258)
105 PRK00758 GMP synthase subunit 37.8 32 0.0007 28.8 2.9 39 77-116 35-74 (184)
106 TIGR00126 deoC deoxyribose-pho 37.7 70 0.0015 28.6 5.1 19 40-58 134-152 (211)
107 PTZ00256 glutathione peroxidas 37.6 1.2E+02 0.0027 25.5 6.4 59 77-135 35-111 (183)
108 PRK05926 hypothetical protein; 37.3 39 0.00084 32.5 3.7 22 42-64 211-232 (370)
109 COG0132 BioD Dethiobiotin synt 37.3 31 0.00067 31.3 2.8 86 29-116 81-171 (223)
110 cd06330 PBP1_Arsenic_SBP_like 37.2 2.1E+02 0.0045 25.5 8.1 40 77-117 59-99 (346)
111 PRK09997 hydroxypyruvate isome 37.0 1.6E+02 0.0034 25.8 7.2 92 96-192 40-139 (258)
112 cd04795 SIS SIS domain. SIS (S 36.8 27 0.00058 24.8 2.0 62 45-116 19-81 (87)
113 KOG1203 Predicted dehydrogenas 36.8 3.4E+02 0.0074 27.0 10.0 145 49-199 77-244 (411)
114 PRK00347 putative DNA-binding 36.7 21 0.00045 32.5 1.6 78 104-192 132-210 (234)
115 cd06349 PBP1_ABC_ligand_bindin 36.6 3.1E+02 0.0067 24.4 9.6 35 82-117 65-99 (340)
116 PRK13695 putative NTPase; Prov 36.3 2.4E+02 0.0052 23.1 8.7 71 138-214 78-155 (174)
117 PRK01792 ribB 3,4-dihydroxy-2- 36.3 34 0.00074 31.0 2.9 54 61-115 145-202 (214)
118 PRK07478 short chain dehydroge 36.3 2.5E+02 0.0053 23.8 8.1 101 51-179 6-112 (254)
119 PF13524 Glyco_trans_1_2: Glyc 36.2 18 0.00038 26.5 0.9 66 100-188 14-79 (92)
120 cd03111 CpaE_like This protein 36.1 74 0.0016 24.5 4.5 77 32-111 8-95 (106)
121 PRK12938 acetyacetyl-CoA reduc 36.1 2.6E+02 0.0057 23.4 8.8 84 53-163 5-89 (246)
122 cd06341 PBP1_ABC_ligand_bindin 36.0 2.7E+02 0.0058 24.7 8.6 75 36-117 16-98 (341)
123 cd07244 FosA FosA, a Fosfomyci 36.0 39 0.00085 25.6 2.9 45 97-141 69-114 (121)
124 TIGR02415 23BDH acetoin reduct 36.0 2.6E+02 0.0057 23.4 9.9 99 53-179 2-105 (254)
125 PF00591 Glycos_transf_3: Glyc 35.9 23 0.0005 31.6 1.8 121 53-185 2-137 (252)
126 TIGR00506 ribB 3,4-dihydroxy-2 35.8 36 0.00079 30.4 3.0 54 61-115 135-192 (199)
127 PRK09072 short chain dehydroge 35.7 1.6E+02 0.0035 25.2 6.9 82 52-161 6-87 (263)
128 TIGR00361 ComEC_Rec2 DNA inter 35.4 47 0.001 34.0 4.1 51 64-118 607-659 (662)
129 TIGR02764 spore_ybaN_pdaB poly 35.3 2.7E+02 0.0057 23.3 8.2 74 99-192 110-183 (191)
130 TIGR02351 thiH thiazole biosyn 35.1 3.3E+02 0.0072 25.8 9.5 127 3-163 160-298 (366)
131 PRK10494 hypothetical protein; 34.9 82 0.0018 28.7 5.2 77 39-119 108-211 (259)
132 cd00958 DhnA Class I fructose- 34.8 1.6E+02 0.0035 25.5 6.9 86 39-148 144-232 (235)
133 PRK06101 short chain dehydroge 34.8 1.8E+02 0.004 24.6 7.1 13 53-65 3-15 (240)
134 PRK08654 pyruvate carboxylase 34.5 2.3E+02 0.005 28.2 8.6 17 171-187 173-189 (499)
135 COG0029 NadB Aspartate oxidase 34.0 27 0.00058 35.6 2.0 31 51-81 186-216 (518)
136 PRK07069 short chain dehydroge 33.4 2.3E+02 0.005 23.7 7.4 30 53-89 1-30 (251)
137 CHL00067 rps2 ribosomal protei 33.2 2.4E+02 0.0052 25.4 7.8 26 153-191 160-185 (230)
138 PRK09071 hypothetical protein; 33.2 83 0.0018 29.8 5.1 107 2-124 54-164 (323)
139 cd02929 TMADH_HD_FMN Trimethyl 33.1 2E+02 0.0042 27.5 7.6 60 168-236 138-212 (370)
140 PRK08063 enoyl-(acyl carrier p 32.9 3E+02 0.0064 23.1 8.1 87 50-163 3-90 (250)
141 PRK15473 cbiF cobalt-precorrin 32.5 1.9E+02 0.0042 25.8 7.1 115 40-166 117-238 (257)
142 PF00107 ADH_zinc_N: Zinc-bind 32.5 42 0.00092 25.6 2.6 69 42-113 5-87 (130)
143 PF13407 Peripla_BP_4: Peripla 32.4 2E+02 0.0043 24.2 6.9 78 98-185 69-150 (257)
144 TIGR00514 accC acetyl-CoA carb 32.3 2.9E+02 0.0063 26.5 8.7 145 35-186 9-188 (449)
145 smart00842 FtsA Cell division 32.1 1.7E+02 0.0037 24.6 6.4 70 106-184 20-109 (187)
146 cd01425 RPS2 Ribosomal protein 31.9 2.2E+02 0.0049 24.6 7.2 84 93-191 30-151 (193)
147 TIGR03728 glyco_access_1 glyco 31.9 1.7E+02 0.0038 27.5 6.8 64 96-164 2-65 (265)
148 PRK13210 putative L-xylulose 5 31.9 1E+02 0.0022 27.0 5.2 92 97-192 53-148 (284)
149 PRK09989 hypothetical protein; 31.8 2.3E+02 0.005 24.8 7.4 91 97-192 41-139 (258)
150 PF03808 Glyco_tran_WecB: Glyc 31.6 1.6E+02 0.0035 24.8 6.1 96 19-167 17-114 (172)
151 PF02784 Orn_Arg_deC_N: Pyrido 31.6 1.8E+02 0.0039 25.5 6.7 85 94-189 138-233 (251)
152 PRK14071 6-phosphofructokinase 31.6 1.1E+02 0.0024 29.3 5.7 53 3-57 58-113 (360)
153 cd04729 NanE N-acetylmannosami 31.4 87 0.0019 27.1 4.6 74 38-117 131-207 (219)
154 TIGR03029 EpsG chain length de 31.3 44 0.00095 29.5 2.8 34 82-115 237-270 (274)
155 PRK13530 arsenate reductase; P 31.3 2.2E+02 0.0047 23.1 6.7 86 84-179 31-118 (133)
156 PRK07097 gluconate 5-dehydroge 31.3 2.2E+02 0.0047 24.5 7.0 107 47-180 6-116 (265)
157 cd03016 PRX_1cys Peroxiredoxin 31.1 1.8E+02 0.0039 25.0 6.5 112 77-191 19-161 (203)
158 PF01973 MAF_flag10: Protein o 31.1 68 0.0015 26.5 3.8 43 83-129 25-77 (170)
159 PRK08305 spoVFB dipicolinate s 31.0 55 0.0012 29.1 3.3 38 82-119 121-159 (196)
160 PRK11178 uridine phosphorylase 30.9 4E+02 0.0087 24.0 11.8 159 4-165 25-220 (251)
161 PF02579 Nitro_FeMo-Co: Dinitr 30.8 74 0.0016 23.2 3.5 20 42-62 45-64 (94)
162 PRK03731 aroL shikimate kinase 30.5 58 0.0013 26.4 3.2 76 33-112 11-98 (171)
163 PRK06267 hypothetical protein; 30.5 1.8E+02 0.0038 27.5 6.8 81 41-157 156-237 (350)
164 PRK06111 acetyl-CoA carboxylas 30.1 4.6E+02 0.0099 24.9 9.6 17 99-115 89-105 (450)
165 PRK06523 short chain dehydroge 30.0 3.4E+02 0.0075 23.0 9.3 17 49-65 7-23 (260)
166 PLN02424 ketopantoate hydroxym 29.9 1.6E+02 0.0034 28.6 6.3 113 41-157 45-196 (332)
167 PRK12745 3-ketoacyl-(acyl-carr 29.8 1.7E+02 0.0037 24.7 6.0 82 53-162 4-87 (256)
168 PRK06398 aldose dehydrogenase; 29.8 3.6E+02 0.0079 23.2 8.5 16 50-65 5-20 (258)
169 cd04733 OYE_like_2_FMN Old yel 29.7 2.6E+02 0.0056 26.0 7.7 59 168-235 137-210 (338)
170 PRK01130 N-acetylmannosamine-6 29.3 1.1E+02 0.0023 26.5 4.8 66 45-116 133-202 (221)
171 PF10609 ParA: ParA/MinD ATPas 29.3 53 0.0011 25.5 2.6 51 80-131 23-74 (81)
172 PRK00115 hemE uroporphyrinogen 29.1 2.3E+02 0.0051 26.3 7.3 29 82-116 239-267 (346)
173 PRK14178 bifunctional 5,10-met 29.1 2.4E+02 0.0053 26.4 7.4 108 72-205 15-125 (279)
174 TIGR00421 ubiX_pad polyprenyl 29.1 2E+02 0.0042 24.9 6.4 59 81-155 111-174 (181)
175 TIGR03137 AhpC peroxiredoxin. 28.9 1.4E+02 0.0031 25.2 5.4 101 93-199 49-168 (187)
176 PRK08154 anaerobic benzoate ca 28.5 51 0.0011 30.4 2.8 108 2-113 107-232 (309)
177 PRK05876 short chain dehydroge 28.5 4.1E+02 0.0089 23.3 9.0 100 50-177 5-109 (275)
178 TIGR02691 arsC_pI258_fam arsen 28.2 1.4E+02 0.0031 24.0 5.1 28 99-126 41-68 (129)
179 cd02803 OYE_like_FMN_family Ol 28.2 1.4E+02 0.003 27.2 5.5 36 168-203 129-170 (327)
180 PRK06114 short chain dehydroge 27.9 3.8E+02 0.0083 22.8 8.0 87 50-163 7-94 (254)
181 PF01070 FMN_dh: FMN-dependent 27.9 81 0.0018 30.2 4.1 69 43-116 238-309 (356)
182 PRK10754 quinone oxidoreductas 27.8 4.2E+02 0.0091 23.2 8.8 72 38-112 152-236 (327)
183 CHL00194 ycf39 Ycf39; Provisio 27.8 2.5E+02 0.0053 25.2 7.0 11 53-63 2-12 (317)
184 PTZ00253 tryparedoxin peroxida 27.7 1.6E+02 0.0035 25.1 5.6 55 94-148 55-118 (199)
185 TIGR00230 sfsA sugar fermentat 27.7 67 0.0014 29.3 3.3 77 104-192 131-208 (232)
186 cd02042 ParA ParA and ParB of 27.6 1.1E+02 0.0024 22.6 4.1 70 31-103 7-84 (104)
187 PRK11478 putative lyase; Provi 27.6 71 0.0015 24.0 3.0 23 97-119 85-107 (129)
188 cd06340 PBP1_ABC_ligand_bindin 27.6 2.5E+02 0.0053 25.3 7.0 122 40-161 83-231 (347)
189 PRK13609 diacylglycerol glucos 27.5 3.4E+02 0.0073 24.7 8.0 48 109-166 257-304 (380)
190 PRK04155 chaperone protein Hch 27.5 12 0.00025 34.9 -1.6 40 54-98 151-196 (287)
191 PRK14607 bifunctional glutamin 27.4 2.4E+02 0.0053 28.3 7.5 120 54-186 268-403 (534)
192 PF04481 DUF561: Protein of un 27.2 2.8E+02 0.0061 25.8 7.2 121 66-207 39-171 (242)
193 TIGR01832 kduD 2-deoxy-D-gluco 27.2 2.6E+02 0.0057 23.4 6.7 16 50-65 4-19 (248)
194 cd06830 PLPDE_III_ADC Type III 26.9 3.5E+02 0.0077 25.9 8.3 78 86-184 89-180 (409)
195 cd06557 KPHMT-like Ketopantoat 26.9 5E+02 0.011 23.9 11.0 72 42-113 23-108 (254)
196 PF13380 CoA_binding_2: CoA bi 26.7 2.1E+02 0.0045 22.7 5.7 94 85-192 3-104 (116)
197 PRK06096 molybdenum transport 26.6 1.1E+02 0.0023 28.8 4.5 72 4-81 198-282 (284)
198 PRK06139 short chain dehydroge 26.6 3.7E+02 0.0079 24.8 8.1 103 51-180 7-113 (330)
199 cd07035 TPP_PYR_POX_like Pyrim 26.5 2.6E+02 0.0055 22.4 6.3 17 172-188 127-143 (155)
200 TIGR02852 spore_dpaB dipicolin 26.5 79 0.0017 27.8 3.5 39 82-120 116-155 (187)
201 cd04922 ACT_AKi-HSDH-ThrA_2 AC 26.5 97 0.0021 20.8 3.3 31 85-115 4-35 (66)
202 cd01522 RHOD_1 Member of the R 26.5 1.5E+02 0.0032 23.0 4.8 91 3-115 1-95 (117)
203 PRK07577 short chain dehydroge 26.4 3.7E+02 0.0081 22.2 8.6 15 51-65 3-17 (234)
204 PF03749 SfsA: Sugar fermentat 26.4 40 0.00088 30.3 1.7 78 104-192 118-196 (215)
205 PRK07109 short chain dehydroge 26.2 2.1E+02 0.0045 26.3 6.4 102 50-179 7-113 (334)
206 TIGR01369 CPSaseII_lrg carbamo 25.9 3.5E+02 0.0077 29.5 8.9 149 40-194 70-279 (1050)
207 PF14601 TFX_C: DNA_binding pr 25.8 1.3E+02 0.0029 23.4 4.3 50 154-210 11-60 (84)
208 COG4529 Uncharacterized protei 25.7 2.5E+02 0.0054 28.5 7.2 43 175-223 259-301 (474)
209 COG1775 HgdB Benzoyl-CoA reduc 25.6 2.7E+02 0.0058 27.6 7.1 95 87-181 237-347 (379)
210 cd08613 GDPD_GDE4_like_1 Glyce 25.6 63 0.0014 30.7 2.9 36 42-80 255-291 (309)
211 PRK12829 short chain dehydroge 25.6 2.8E+02 0.006 23.4 6.6 16 49-64 9-24 (264)
212 COG0394 Wzb Protein-tyrosine-p 25.5 1.9E+02 0.0042 24.0 5.5 46 83-129 29-78 (139)
213 cd03785 GT1_MurG MurG is an N- 25.5 68 0.0015 28.4 3.0 38 90-131 218-257 (350)
214 cd02932 OYE_YqiM_FMN Old yello 25.3 76 0.0016 29.5 3.3 30 168-197 142-174 (336)
215 PRK13599 putative peroxiredoxi 25.3 1.5E+02 0.0032 26.2 5.1 98 93-191 46-163 (215)
216 cd00853 NifX NifX belongs to a 25.3 1.1E+02 0.0024 23.3 3.7 16 46-61 56-71 (102)
217 PLN02607 1-aminocyclopropane-1 25.2 3.8E+02 0.0082 26.0 8.2 45 138-182 183-229 (447)
218 TIGR01518 g3p_cytidyltrns glyc 25.2 54 0.0012 26.0 2.1 57 54-113 1-65 (125)
219 PRK07792 fabG 3-ketoacyl-(acyl 25.2 5E+02 0.011 23.2 8.8 103 49-178 10-116 (306)
220 PRK06552 keto-hydroxyglutarate 25.1 1.4E+02 0.003 26.6 4.8 48 3-61 117-165 (213)
221 PF04055 Radical_SAM: Radical 25.1 2.1E+02 0.0045 21.7 5.3 88 81-180 75-164 (166)
222 PRK14489 putative bifunctional 25.0 5.7E+02 0.012 24.2 9.2 96 30-130 211-322 (366)
223 cd03794 GT1_wbuB_like This fam 25.0 1.4E+02 0.003 25.3 4.7 66 80-148 292-361 (394)
224 PF13460 NAD_binding_10: NADH( 25.0 2.9E+02 0.0063 22.1 6.4 76 101-191 14-90 (183)
225 TIGR03101 hydr2_PEP hydrolase, 24.9 2.6E+02 0.0057 25.5 6.7 38 83-123 25-67 (266)
226 PRK07394 hypothetical protein; 24.7 1.3E+02 0.0027 28.8 4.7 107 2-123 55-171 (342)
227 cd06388 PBP1_iGluR_AMPA_GluR4 24.7 2.4E+02 0.0051 26.5 6.5 126 34-163 70-215 (371)
228 cd00248 Mth938-like Mth938-lik 24.5 75 0.0016 25.2 2.8 40 76-115 43-85 (109)
229 PRK00910 ribB 3,4-dihydroxy-2- 24.4 71 0.0015 29.1 2.9 44 72-115 156-203 (218)
230 COG1798 DPH5 Diphthamide biosy 24.4 1E+02 0.0023 28.9 4.0 53 5-59 43-111 (260)
231 PRK08463 acetyl-CoA carboxylas 24.4 5.5E+02 0.012 25.2 9.2 18 171-188 173-190 (478)
232 PF04993 TfoX_N: TfoX N-termin 24.3 46 0.001 25.4 1.5 25 164-188 73-97 (97)
233 PF00926 DHBP_synthase: 3,4-di 24.2 83 0.0018 28.0 3.2 45 71-115 139-187 (194)
234 PRK00945 acetyl-CoA decarbonyl 24.1 65 0.0014 28.1 2.5 55 61-115 14-69 (171)
235 cd06349 PBP1_ABC_ligand_bindin 24.1 4.6E+02 0.0099 23.3 8.0 117 42-158 82-219 (340)
236 PRK11260 cystine transporter s 24.0 83 0.0018 27.3 3.2 35 95-129 27-61 (266)
237 PRK10538 malonic semialdehyde 23.9 2.6E+02 0.0056 23.8 6.1 11 53-63 2-12 (248)
238 PRK09134 short chain dehydroge 23.9 4.5E+02 0.0098 22.3 8.2 16 50-65 8-23 (258)
239 PRK05867 short chain dehydroge 23.8 4.5E+02 0.0098 22.3 7.9 17 49-65 7-23 (253)
240 PRK11359 cyclic-di-GMP phospho 23.6 1.3E+02 0.0028 30.2 4.8 56 2-58 700-755 (799)
241 cd06334 PBP1_ABC_ligand_bindin 23.5 5.5E+02 0.012 23.5 8.6 59 56-116 32-97 (351)
242 PRK08303 short chain dehydroge 23.5 5.6E+02 0.012 23.2 9.6 88 49-163 6-103 (305)
243 TIGR01273 speA arginine decarb 23.3 3.9E+02 0.0084 27.8 8.2 121 84-237 139-273 (624)
244 cd03148 GATase1_EcHsp31_like T 23.1 24 0.00051 31.6 -0.4 40 54-98 100-145 (232)
245 TIGR01361 DAHP_synth_Bsub phos 23.1 5.8E+02 0.013 23.3 9.1 63 44-111 82-161 (260)
246 TIGR00542 hxl6Piso_put hexulos 23.1 2.6E+02 0.0057 24.7 6.2 93 97-192 53-148 (279)
247 cd06259 YdcF-like YdcF-like. Y 23.1 1.2E+02 0.0026 24.1 3.8 95 70-191 22-119 (150)
248 PRK10124 putative UDP-glucose 23.1 5.9E+02 0.013 25.0 9.2 91 81-192 142-232 (463)
249 cd01391 Periplasmic_Binding_Pr 22.9 3.9E+02 0.0085 21.2 9.1 33 83-117 58-90 (269)
250 TIGR01382 PfpI intracellular p 22.7 3.1E+02 0.0068 22.0 6.2 79 40-118 15-101 (166)
251 PLN02335 anthranilate synthase 22.7 62 0.0014 28.6 2.2 33 84-116 64-98 (222)
252 PRK07094 biotin synthase; Prov 22.7 5.8E+02 0.013 23.2 8.7 52 95-152 194-246 (323)
253 PRK03353 ribB 3,4-dihydroxy-2- 22.7 96 0.0021 28.0 3.4 44 72-115 155-202 (217)
254 TIGR03868 F420-O_ABCperi propo 22.5 68 0.0015 28.2 2.4 50 75-124 69-120 (287)
255 cd06660 Aldo_ket_red Aldo-keto 22.5 4.4E+02 0.0096 23.0 7.5 141 39-206 128-284 (285)
256 cd01523 RHOD_Lact_B Member of 22.5 1E+02 0.0022 22.8 3.0 84 3-111 1-87 (100)
257 COG0413 PanB Ketopantoate hydr 22.5 94 0.002 29.3 3.3 76 86-167 110-186 (268)
258 PRK06182 short chain dehydroge 22.4 3.3E+02 0.0071 23.5 6.6 30 134-163 53-82 (273)
259 PRK14030 glutamate dehydrogena 22.4 1.3E+02 0.0029 30.0 4.6 110 2-134 269-378 (445)
260 PRK06179 short chain dehydroge 22.3 5E+02 0.011 22.2 8.7 30 133-163 51-81 (270)
261 cd04918 ACT_AK1-AT_2 ACT domai 22.3 1.1E+02 0.0025 21.4 3.1 36 83-118 2-39 (65)
262 cd08281 liver_ADH_like1 Zinc-d 22.3 6.1E+02 0.013 23.2 9.3 69 42-112 206-287 (371)
263 cd01524 RHOD_Pyr_redox Member 22.3 2.2E+02 0.0049 20.6 4.8 75 3-110 1-76 (90)
264 PRK07023 short chain dehydroge 22.3 4.5E+02 0.0097 22.1 7.3 13 53-65 3-15 (243)
265 TIGR02151 IPP_isom_2 isopenten 22.3 1.8E+02 0.004 27.3 5.3 87 25-117 179-284 (333)
266 COG3193 GlcG Uncharacterized p 22.2 1.3E+02 0.0028 25.8 3.9 28 164-191 2-29 (141)
267 PRK14174 bifunctional 5,10-met 22.1 3.8E+02 0.0083 25.3 7.3 88 72-177 16-110 (295)
268 cd04923 ACT_AK-LysC-DapG-like_ 22.0 1.4E+02 0.0031 19.5 3.4 33 85-117 3-36 (63)
269 COG2378 Predicted transcriptio 22.0 1.8E+02 0.0038 27.3 5.1 54 98-153 39-92 (311)
270 cd07263 Glo_EDI_BRP_like_16 Th 22.0 86 0.0019 22.5 2.5 21 96-116 76-96 (119)
271 TIGR01214 rmlD dTDP-4-dehydror 22.0 1.9E+02 0.004 25.0 4.9 54 53-113 1-54 (287)
272 PRK13189 peroxiredoxin; Provis 21.9 1.4E+02 0.003 26.4 4.2 95 93-190 53-169 (222)
273 TIGR00587 nfo apurinic endonuc 21.9 5.8E+02 0.013 22.8 8.6 93 97-198 12-109 (274)
274 PRK08265 short chain dehydroge 21.9 3E+02 0.0064 23.7 6.2 16 50-65 5-20 (261)
275 PLN02783 diacylglycerol O-acyl 21.7 3.2E+02 0.0069 25.7 6.7 26 155-180 261-288 (315)
276 PRK12485 bifunctional 3,4-dihy 21.7 86 0.0019 30.5 3.1 44 72-115 145-192 (369)
277 PRK08462 biotin carboxylase; V 21.7 5.3E+02 0.011 24.6 8.4 79 103-188 95-192 (445)
278 TIGR03234 OH-pyruv-isom hydrox 21.7 4.6E+02 0.01 22.7 7.4 91 97-192 40-138 (254)
279 cd07265 2_3_CTD_N N-terminal d 21.6 85 0.0018 23.5 2.5 32 85-116 62-93 (122)
280 PRK02308 uvsE putative UV dama 21.6 5.2E+02 0.011 24.2 8.1 95 94-192 46-145 (303)
281 PRK00380 panC pantoate--beta-a 21.6 5E+02 0.011 24.2 7.9 50 59-113 29-90 (281)
282 PRK06246 fumarate hydratase; P 21.4 2.7E+02 0.0059 26.3 6.1 55 170-230 4-61 (280)
283 TIGR03466 HpnA hopanoid-associ 21.3 2.3E+02 0.0049 24.8 5.4 12 53-64 2-13 (328)
284 PRK14181 bifunctional 5,10-met 21.3 3.7E+02 0.008 25.4 7.0 108 72-205 15-125 (287)
285 PRK13398 3-deoxy-7-phosphohept 21.2 6.5E+02 0.014 23.1 9.8 105 77-181 127-258 (266)
286 cd04917 ACT_AKiii-LysC-EC_2 AC 21.1 1.7E+02 0.0036 20.2 3.7 34 85-118 4-38 (64)
287 PRK05362 phosphopentomutase; P 21.1 2.8E+02 0.0061 27.2 6.4 64 99-167 224-289 (394)
288 PF00903 Glyoxalase: Glyoxalas 21.0 66 0.0014 23.4 1.7 28 89-116 78-105 (128)
289 PF10686 DUF2493: Protein of u 21.0 1.3E+02 0.0028 22.4 3.3 62 51-118 3-66 (71)
290 PRK05567 inosine 5'-monophosph 21.0 1.3E+02 0.0027 29.8 4.1 97 42-139 281-390 (486)
291 cd01653 GATase1 Type 1 glutami 20.9 2.8E+02 0.006 18.8 4.9 69 39-117 13-87 (115)
292 cd05537 POLBc_Pol_II DNA polym 20.9 1.2E+02 0.0026 29.2 3.8 125 71-211 117-282 (371)
293 PRK12828 short chain dehydroge 20.8 4.7E+02 0.01 21.4 7.6 13 51-63 7-19 (239)
294 PRK12823 benD 1,6-dihydroxycyc 20.7 5.2E+02 0.011 21.8 8.8 16 50-65 7-22 (260)
295 PRK07832 short chain dehydroge 20.6 4.6E+02 0.01 22.6 7.2 13 53-65 2-14 (272)
296 cd06295 PBP1_CelR Ligand bindi 20.6 5.2E+02 0.011 21.8 9.7 64 41-118 30-96 (275)
297 cd00550 ArsA_ATPase Oxyanion-t 20.5 56 0.0012 29.2 1.4 32 85-116 164-195 (254)
298 TIGR01072 murA UDP-N-acetylglu 20.4 2.5E+02 0.0054 26.2 5.8 72 40-113 123-207 (416)
299 cd00562 NifX_NifB This CD repr 20.3 1.6E+02 0.0034 21.7 3.7 15 48-62 58-72 (102)
300 PRK05458 guanosine 5'-monophos 20.3 1.6E+02 0.0035 28.1 4.5 88 39-129 150-248 (326)
301 PRK15000 peroxidase; Provision 20.3 1.2E+02 0.0025 26.4 3.3 99 94-199 53-173 (200)
302 PRK11059 regulatory protein Cs 20.0 1.3E+02 0.0029 30.1 4.1 56 2-58 555-610 (640)
303 PRK14173 bifunctional 5,10-met 20.0 4.6E+02 0.0099 24.7 7.3 89 73-179 19-110 (287)
304 TIGR00693 thiE thiamine-phosph 20.0 1.4E+02 0.0031 24.9 3.7 17 100-116 164-180 (196)
No 1
>PF04227 Indigoidine_A: Indigoidine synthase A like protein; InterPro: IPR007342 Members of this entry catalyze the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil. It is also reported to be involved in the synthesis of indigoidine, which is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 1VKM_C.
Probab=100.00 E-value=3.5e-107 Score=742.45 Aligned_cols=234 Identities=63% Similarity=0.900 Sum_probs=175.8
Q ss_pred CCCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhh
Q 026121 1 MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTEL 80 (243)
Q Consensus 1 vGLs~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL 80 (243)
|||+++||++|++.++++.|+|||||++++++|++||||||+||++||++||+||+||||||||||+++|||||+||+||
T Consensus 60 vGl~~~ele~la~~~~~~~K~s~RDl~~~~a~~~~GaTTVsaTm~lA~~aGI~VfaTGGiGGVHrga~~t~DiSaDL~eL 139 (293)
T PF04227_consen 60 VGLSEEELERLADAGKGVIKVSRRDLAYALAKGLSGATTVSATMILAHLAGIKVFATGGIGGVHRGAEETFDISADLTEL 139 (293)
T ss_dssp ES--HHHHHHHHHH----EEE-GGGHHHHHHHT--EEE-HHHHHHHHHHTT--EEE-S-B--B-TT---SS-B-HHHHHH
T ss_pred EcCCHHHHHHHHHhccCCeeecHhhHHHHHhCCCccHhHHHHHHHHHHHcCCCEEEeCCcccCCCCCcCcchhhhHHHHH
Confidence 79999999999997678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEE
Q 026121 81 GRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVI 160 (243)
Q Consensus 81 ~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lv 160 (243)
+||||+|||||+|||||||+|||||||+||||+||+||+||+||+|+||+++|||+|+++|+|++++++|+||+++|+||
T Consensus 140 ~rtpv~VV~aG~KsILDi~~TLE~LET~GV~Vvgy~t~~fPaFy~~~Sg~~~~~~~d~~~e~A~~~~~~~~lgl~~g~lv 219 (293)
T PF04227_consen 140 ARTPVAVVCAGAKSILDIPKTLEYLETQGVPVVGYGTDEFPAFYTRSSGFKSPYRVDSPEEAARIIRAHWQLGLPSGVLV 219 (293)
T ss_dssp TTS-EEEEESBB-TTS-HHHHHHHHHHTT--EEEES-SB--BTTBS--S-B---EE-SHHHHHHHHHHHHHTT--SEEEE
T ss_pred hcCCceEEEccCcchhchHHHHHHhhcCCeEEEEecCCCCCeeeccCCCCCCCcccCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHH
Q 026121 161 GVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVAL 234 (243)
Q Consensus 161 anPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPflL~~i~elT~G~Sl~aNiaLv~nNA~laa~IA~al 234 (243)
+||||+|+++|+++|+++|++|++||+++||+||++|||||+||+|+|+|+|+++|++||+|||++|+|||++|
T Consensus 220 anPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPfLL~~i~e~T~G~Sl~aNialv~nNa~~aa~IA~~l 293 (293)
T PF04227_consen 220 ANPIPEEDAIDGEEIESAIEQALAEAEEQGIRGKAVTPFLLARINELTGGKSLEANIALVKNNARLAAQIAVAL 293 (293)
T ss_dssp E----GGG---HHHHHHHHHT-----------GGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EccCChHhcCCHHHHHHHHHHHHhhHhhcCCCcccCCHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987
No 2
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.7e-105 Score=718.97 Aligned_cols=236 Identities=57% Similarity=0.828 Sum_probs=233.6
Q ss_pred CCCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhh
Q 026121 1 MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTEL 80 (243)
Q Consensus 1 vGLs~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL 80 (243)
||||++|||.|++. .++.|+|||||++++|.|++||||||+||++|+++||+|||||||||||||+|+||||||||+||
T Consensus 74 iGLs~eelE~la~~-~~a~KvsrrDl~~vvA~~~~gaTTVAaTMi~A~~aGI~vfaTGGiGGVHrGAe~t~DISaDL~EL 152 (310)
T COG2313 74 IGLSKEELELLARE-GNAMKVSRRDLPFVVAEGKNGATTVAATMILAALAGIKVFATGGIGGVHRGAEHTFDISADLTEL 152 (310)
T ss_pred eecCHHHHHHHhhc-CccceeeccchHHHHhcCcCCcchHHHHHHHHHHcCceEEEecCcccccCCcccccccchhHHHH
Confidence 69999999999997 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEE
Q 026121 81 GRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVI 160 (243)
Q Consensus 81 ~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lv 160 (243)
+||+|+|||||+||||||++|||||||+||||+||+|++||+||+|+||+++|.|+++|+++|+++.++|+|||.+|+||
T Consensus 153 a~T~v~vV~AGaKsILDi~~TlE~LET~gVPvvg~~t~~fPaF~sR~Sg~~~pl~l~~pe~ia~~~~t~~~lglegg~lV 232 (310)
T COG2313 153 ARTNVTVVCAGAKSILDIGLTLEVLETQGVPVVGYQTNEFPAFFSRESGFRVPLRLESPEEIARILATKWQLGLEGGLLV 232 (310)
T ss_pred hcCCeEEEecCchhhhccHHHHHHHHhcCcceeecCCCcccchhcccCCCcCccccCCHHHHHHHHHHHHHhCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026121 161 GVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQL 237 (243)
Q Consensus 161 anPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPflL~~i~elT~G~Sl~aNiaLv~nNA~laa~IA~al~~~ 237 (243)
+||+|++++||.++|+.+|++|+.+|+++||+||++|||||.+|.|+|+|+||++||+||+|||++|++||++|+++
T Consensus 233 aNPvPee~eip~eeie~~I~~a~~eae~~gi~GK~vTPfLLgkl~elT~GrSL~tNIaLv~nNa~laa~IAv~l~~l 309 (310)
T COG2313 233 ANPVPEEFEIPEEEIEALIERALAEAEALGITGKEVTPFLLGKLVELTGGRSLKTNIALVENNAILAAEIAVALARL 309 (310)
T ss_pred ecCCchhccCCHHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHHhCCccHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985
No 3
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=100.00 E-value=1.8e-77 Score=573.01 Aligned_cols=240 Identities=58% Similarity=0.829 Sum_probs=236.0
Q ss_pred CCCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhh
Q 026121 1 MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTEL 80 (243)
Q Consensus 1 vGLs~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL 80 (243)
|||+++||+.||.+++.++|+||||+++++.++.+|+|||++||++||++||.||||||||||||||+++||||+||+||
T Consensus 89 iGLt~e~L~~La~~g~~~~kvsrRD~~~v~i~rlvggTtvaaTm~iA~~~gI~vfaTggiggvhr~An~smdisadl~el 168 (614)
T KOG3009|consen 89 IGLTPEELETLASSGPSAVKVSRRDIASVVIVRLVGGTTVAATMIIAHAAGIVVFATGGIGGVHRGANQSMDISADLTEL 168 (614)
T ss_pred ecCCHHHHHHHhhcCccccccccccccccceeeecCCcchhhhhhhcccceEEEEecCCcchhhhccccccchhhhhhhh
Confidence 69999999999998777999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCC--CcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeE
Q 026121 81 GRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNE--FPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGL 158 (243)
Q Consensus 81 ~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~--fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~ 158 (243)
+||||+|||+|+|||||||+||||||||||+|++|+++. ||+||+|+|++++|+++.+++|+++.++.+..|+.+.|.
T Consensus 169 grtpvavv~agvksiLdip~tle~letq~V~vvtlgs~gavfpsfftrks~~~~p~~~~s~~ev~k~l~S~~~l~~~~g~ 248 (614)
T KOG3009|consen 169 GRTPVAVVSAGVKSILDIPKTLEYLETQGVVVVTLGSPGAVFPSFFTRKSGCKAPRKLESPQEVAKLLQSNVCLGNEFGT 248 (614)
T ss_pred cCCcceEEecchhhhccchhhhhhhccccEEEEEeCCCCCccccccCcccccCCccccCCHHHHHHHHhhccccCcccce
Confidence 999999999999999999999999999999999999887 999999999999999999999999999999999999999
Q ss_pred EEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026121 159 VIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLR 238 (243)
Q Consensus 159 lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPflL~~i~elT~G~Sl~aNiaLv~nNA~laa~IA~al~~~~ 238 (243)
|+++|||+.+++|...|+.+|++|+++|.++||.||.||||+|.++.++|.|.|+.+|||||+|||.++.|||..|+.++
T Consensus 249 L~a~piP~~fAad~~~Ieaaik~at~~a~~q~itG~~VTpflla~vl~~t~g~slasniAlVenna~va~~ia~~L~~~k 328 (614)
T KOG3009|consen 249 LGAIPIPEHFAADGPKIEAAIKKATQEAREQNITGKTVTPFLLARVLELTLGVSLASNIALVENNANVASQIAADLCDLK 328 (614)
T ss_pred eeccCChHHhhccchhHHHHHHHHHHHHHHhcccccccchhHHHHHHHHhhcchhHHHHHHHhccccchHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hh
Q 026121 239 QQ 240 (243)
Q Consensus 239 ~~ 240 (243)
+.
T Consensus 329 ~k 330 (614)
T KOG3009|consen 329 NK 330 (614)
T ss_pred cc
Confidence 54
No 4
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=91.47 E-value=5.4 Score=39.59 Aligned_cols=182 Identities=16% Similarity=0.099 Sum_probs=121.6
Q ss_pred CCCHHHHHHHHhc---CCCcccccc----cchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccc
Q 026121 2 RLSTEELERLAKL---GSKAQKTAR----RDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDIS 74 (243)
Q Consensus 2 GLs~~ele~la~~---~~~~~K~Sr----RDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiS 74 (243)
|+|.+|+..|++. .......+. ..+-..++.|..|--+--....++..+|++|-=+||=|=-|.++ |
T Consensus 49 G~t~~Ei~~lt~aM~~sg~~i~~~~~~~~~~~vDkhgTGGdG~niSt~~apivAA~Gv~VaKhgnR~iss~~G------T 122 (437)
T TIGR02643 49 GMNRDERVALTLAMRDSGDVLDWRSLDLNGPVVDKHSTGGVGDVVSLMLGPIVAACGGYVPMISGRGLGHTGG------T 122 (437)
T ss_pred CCCHHHHHHHHHHHHHhCCcccCcccccCCCeeEecCCCCCCcchhHHHHHHHHhCCCCeeeecCCCcCCCCc------h
Confidence 8999999999762 123344441 22344556677766333356688889999999999866556665 5
Q ss_pred cchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcc---eeecCCCcccCccCCCHHHHHHHHHHHHh
Q 026121 75 SDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPA---FFTETSGSKVPCRVDSPEDCARLIDVNMK 151 (243)
Q Consensus 75 aDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPa---Fy~~~Sg~~~~~r~d~~~e~A~~~~~~~~ 151 (243)
+|.-|-= .|.+-=|+.....+.||..|+.++|...+--|| +|--+ .++..+|+.-.++.-|..+.-
T Consensus 123 aD~LEal--------pG~~v~ls~e~~~~~l~~~g~~f~gqa~~l~PADk~ly~lR---Dvt~tVds~pLi~aSImSKKl 191 (437)
T TIGR02643 123 LDKLEAI--------PGYDIFPDPALFRRVVKDVGVAIIGQTADLAPADKRFYATR---DVTATVESIPLITASILSKKL 191 (437)
T ss_pred HHHHHhC--------CCCCCCCCHHHHHHHHHHcCceEEccCCCcCcchhceeeee---eecCCCCcHHHHHHHHHHHHH
Confidence 6655521 367777888899999999999999987777776 44321 266789998888777766666
Q ss_pred cCCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHH-HHHcCCC------------CccCChHH
Q 026121 152 LKLGSGLVIGVPIPREHAASGRVIESAIQSALRE-AREKNIT------------GNAETPFL 200 (243)
Q Consensus 152 l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~e-a~~~gi~------------Gk~vTPfl 200 (243)
-.-...+|+=+|+=.---+...+--+-+.+.+.+ ++..|++ |..+=|.|
T Consensus 192 A~g~d~ivlDVk~G~gAfmk~~~~A~~LA~~mv~ig~~~g~~~~a~iTdm~qPlG~~iGnal 253 (437)
T TIGR02643 192 AAGLDALVMDVKVGNGAFMPTYEESEELARSLVDVANGAGVRTTALITDMNQPLASAAGNAV 253 (437)
T ss_pred HcCCCeEEEEcCcCCCCcCCCHHHHHHHHHHHHHHHHHcCCeEEEEECCCCCccccccCcHH
Confidence 6667889999999776556544433344444333 4455553 66666664
No 5
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=90.92 E-value=4.1 Score=40.36 Aligned_cols=174 Identities=16% Similarity=0.105 Sum_probs=106.6
Q ss_pred CCCHHHHHHHHhc---CCCcccccccch----HHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccc
Q 026121 2 RLSTEELERLAKL---GSKAQKTARRDI----AHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDIS 74 (243)
Q Consensus 2 GLs~~ele~la~~---~~~~~K~SrRDl----~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiS 74 (243)
|+|.+|+..|++. .....+.+..|+ -..++.|..|-.+--....++..+|++|.=+||=|=-|.++ |
T Consensus 50 G~t~eEi~~lt~Am~~sg~~i~~~~~d~~~~~vDkhgTGGdG~niS~~~a~ivAa~Gv~VaKhg~R~lss~~G------T 123 (440)
T PRK05820 50 GMTRPERVALTLAMRDSGEVLDWSSLNLNGPIVDKHSTGGVGDKISLMLAPMVAACGGYVPMISGRGLGHTGG------T 123 (440)
T ss_pred CCCHHHHHHHHHHHHHhCCcCCCccccCCCCeEEEcCCCCCCccHHHHHHHHHHhCCCCEEeeCCCCCCCccc------H
Confidence 8999999998752 122333342222 22334555555333244667777999999999875556665 7
Q ss_pred cchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCc-ccCccCCCHHHHHH-HHHHHHhc
Q 026121 75 SDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGS-KVPCRVDSPEDCAR-LIDVNMKL 152 (243)
Q Consensus 75 aDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~-~~~~r~d~~~e~A~-~~~~~~~l 152 (243)
+|.-|-= .|.+-=++...-.+.|+..|+.+++-..+..|++-.-- .+ .+...+|+.-.++. ||..+-..
T Consensus 124 aD~LE~L--------pG~~v~ls~e~~~~~l~~~G~~~~~~~~~l~PAdk~l~-~lRdvt~tvds~pli~aSImSKK~A~ 194 (440)
T PRK05820 124 LDKLEAI--------PGYRAFPSNDRFREILKDVGVAIIGQTSDLAPADKRLY-ALRDVTATVESIPLITASILSKKLAE 194 (440)
T ss_pred HHHHHhC--------CCCCCCCCHHHHHHHHHHcCeEEEcCchhcChHHHHHH-HHhcccCCCChHHHHHHHHHHHHHHc
Confidence 7777632 36666678888899999999666654446777753211 22 35667888777654 55555555
Q ss_pred CCCCeEEEEeCCCcCCCCChHHHHHHHHHHH-HHHHHcCC
Q 026121 153 KLGSGLVIGVPIPREHAASGRVIESAIQSAL-REAREKNI 191 (243)
Q Consensus 153 ~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al-~ea~~~gi 191 (243)
| ...+|+=+|.=.---+...+--+-+.+.+ +-++..|+
T Consensus 195 G-~~~lvlDVk~G~gAfmkt~~~A~~La~~mv~ig~~~g~ 233 (440)
T PRK05820 195 G-LDALVLDVKVGSGAFMKTYEEARELARSMVEVANGAGV 233 (440)
T ss_pred C-CCeEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 5 48999999987754454333222333333 23445565
No 6
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=90.21 E-value=4.7 Score=39.58 Aligned_cols=175 Identities=16% Similarity=0.118 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHhc---CCCcccccc--cchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccc
Q 026121 2 RLSTEELERLAKL---GSKAQKTAR--RDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSD 76 (243)
Q Consensus 2 GLs~~ele~la~~---~~~~~K~Sr--RDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaD 76 (243)
|+|.+|+..|++. .......+. ..+-..+..|..|-.+--...+++..+|++|.=.||=|=-|.++ |+|
T Consensus 47 GeT~eEi~g~t~Am~~~~~~l~~~~~~~~~vD~~gTGGdG~~iSt~~a~ivAa~Gv~VaKhgnR~lss~~G------TaD 120 (405)
T TIGR02644 47 GMTDEETAYLTKAMIDSGEVLDLSSLPGPKVDKHSTGGVGDKVSLVLGPIVAACGVKVAKMSGRGLGHTGG------TID 120 (405)
T ss_pred CCCHHHHHHHHHHHHHhCCcCCCcccCCCeeEEeCCCCCCCCchHHHHHHHHhCCCCEEeeCCCCCCCcch------HHH
Confidence 7899999988752 111222221 11222334455555333344677778999999999886667765 777
Q ss_pred hhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHH-HHHHHHHhcCCC
Q 026121 77 LTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCA-RLIDVNMKLKLG 155 (243)
Q Consensus 77 L~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A-~~~~~~~~l~l~ 155 (243)
..|-- .|.+-=|+...-.+.||..|+..++-..+-+|+--.--.=-+....+|+.-.++ .+|..+-..| .
T Consensus 121 ~LE~l--------gG~~v~ls~e~~~~~l~~~G~~fl~~~~~l~PAdk~l~~lRd~~~Tv~sipLi~aSimSKK~A~G-~ 191 (405)
T TIGR02644 121 KLESI--------PGFRTELSEAEFIEIVNKVGLAIIGQTKDLAPADKKLYALRDVTGTVDSIPLIASSIMSKKLAAG-A 191 (405)
T ss_pred HHHhc--------CCCCCCCCHHHHHHHHHHcCeEEecCccccCcchhHHHHHhhcccccCcHHHHHHHHHHHHHhcC-C
Confidence 66632 245566778888899999999987554477887431100011223567665554 5555555555 5
Q ss_pred CeEEEEeCCCcCCCCChHHHHHHHHHHHH-HHHHcCC
Q 026121 156 SGLVIGVPIPREHAASGRVIESAIQSALR-EAREKNI 191 (243)
Q Consensus 156 ~g~lvanPiP~e~~~~~~~i~~~I~~Al~-ea~~~gi 191 (243)
..+|+-+|+=.---+...+.-+.+.+.+. -++..|+
T Consensus 192 ~~~vlDVk~G~gAfm~~~e~a~~LA~~~~~~g~~~g~ 228 (405)
T TIGR02644 192 DAIVLDVKVGSGAFMKTLEDAKELAKLMVEIGKGAGR 228 (405)
T ss_pred CeEEEeecccCCCCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 88999999887655655555555666664 4556676
No 7
>PRK04350 thymidine phosphorylase; Provisional
Probab=89.02 E-value=4.1 Score=40.97 Aligned_cols=185 Identities=18% Similarity=0.170 Sum_probs=117.0
Q ss_pred CCCHHHHHHHHhc---CCCcccccccchHHHHhcCCC-chhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccch
Q 026121 2 RLSTEELERLAKL---GSKAQKTARRDIAHVVATRGN-GATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDL 77 (243)
Q Consensus 2 GLs~~ele~la~~---~~~~~K~SrRDl~~~~a~~~~-GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL 77 (243)
|+|.+|+..|++. .....+.+...+-..+..|.. |.||--....+...+|++|-=+||=|=-|.++ |+|.
T Consensus 127 G~t~~Ei~~lt~AM~~~g~~l~~~~~~~vDkhgTGGd~g~t~S~~~apivAA~Gv~VaKhgnRaiss~sG------TaD~ 200 (490)
T PRK04350 127 GLDMDEIEALTRAMVETGERLDWDRPPVVDKHSIGGVPGNRTTLIVVPIVAAAGLTIPKTSSRAITSPAG------TADT 200 (490)
T ss_pred CCCHHHHHHHHHHHHHhCCcccCCCCCeEEecCCCCCCCCCEeHHHHHHHHhCCCceeeecCCCCCCCCc------hHHH
Confidence 8999999999762 112334444333334455555 33332224445588999999999955556665 5665
Q ss_pred hh-hcCCCeEEEecccccccchhhhHhHhhhCCeeEE-eeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCC
Q 026121 78 TE-LGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVA-AYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLG 155 (243)
Q Consensus 78 ~e-L~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~-gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~ 155 (243)
.| |+ +-=|+.....+.||..|.+.+ |=..+.-|++=- =..++-+..+|+.-.++.-|..|.----.
T Consensus 201 LEaLg-----------~v~ls~e~~~~~l~~~G~~flfG~a~~l~PAdk~-l~~vR~~l~vds~~li~aSImSKKlA~G~ 268 (490)
T PRK04350 201 MEVLA-----------PVDLSVEEIKRVVEKVGGCLVWGGAVNLSPADDI-LIRVERPLSIDPRGQLVASILSKKIAAGS 268 (490)
T ss_pred HHHhh-----------cCCCCHHHHHHHHHHcCEEEEECCccccCHHHHH-HHHHhhhcCCCcHHHHHHHHhhhHhhcCC
Confidence 55 53 233778888999999998766 444555666421 01122235688877776666555544457
Q ss_pred CeEEEEeCCCcCCCCChHHHHHHHHHHHHH-HHHcCCC------------CccCChHHHHHH
Q 026121 156 SGLVIGVPIPREHAASGRVIESAIQSALRE-AREKNIT------------GNAETPFLLARV 204 (243)
Q Consensus 156 ~g~lvanPiP~e~~~~~~~i~~~I~~Al~e-a~~~gi~------------Gk~vTPflL~~i 204 (243)
..+|+=+|.=...-+...+.-+.+.+.+.+ +++.|+. |..+-|.|-.+.
T Consensus 269 ~~lvlDVp~G~ga~v~~~~~A~~LA~~~~~vg~~~g~~v~a~lTd~~qPlG~~iGnalEv~e 330 (490)
T PRK04350 269 THVVIDIPVGPTAKVRSVEEARRLARLFEEVGDRLGLRVECAITDGSQPIGRGIGPALEARD 330 (490)
T ss_pred CceEEecccCCCCcCCCHHHHHHHHHHHHHHHHhcCCeEEEEECCCCeehhccCCchHHHHH
Confidence 889999999887777766666667777644 5556652 777778876553
No 8
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=87.70 E-value=0.89 Score=36.77 Aligned_cols=84 Identities=19% Similarity=0.183 Sum_probs=61.6
Q ss_pred CchhhHHHHHH-HHHHCCCc-----------EEEecccccccCCCccccccccchhhhcCCCeEEEecccc-cccchhhh
Q 026121 35 NGATTVSATMF-FASMVGIP-----------VFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIK-SILDIPRT 101 (243)
Q Consensus 35 ~GaTTVaaTm~-lA~~aGI~-----------VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~K-sILDi~~T 101 (243)
+|=|||+.-+. .....|.+ +..-=|.||.+-+-....+ ..|+...-+.|+++|...-. +|=|--+|
T Consensus 10 ~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~~d~vliEGaGg~~~p~~~~~~-~~d~~~~~~~~vllV~~~~~g~i~~a~~~ 88 (134)
T cd03109 10 IGKTVATAILARALKEKGYRVAPLKPVQTYDFVLVEGAGGLCVPLKEDFT-NADVAKELNLPAILVTSAGLGSINHAFLT 88 (134)
T ss_pred cCHHHHHHHHHHHHHHCCCeEEEEecCCCCCEEEEECCCccccCCCCCCC-HHHHHHHhCCCEEEEEcCCCCcHhHHHHH
Confidence 77788876443 33334654 4567799999987766665 45777777899999985544 45558899
Q ss_pred HhHhhhCCeeEEeeccCC
Q 026121 102 LEYLETHGVCVAAYKTNE 119 (243)
Q Consensus 102 LE~LET~GV~V~gy~td~ 119 (243)
+++++..|+++.|+-.+.
T Consensus 89 ~~~l~~~g~~i~gvi~N~ 106 (134)
T cd03109 89 IEAARIKGIILNGVLGNV 106 (134)
T ss_pred HHHHHhcCCceeEEEEcc
Confidence 999999999999987543
No 9
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=86.10 E-value=3.8 Score=38.54 Aligned_cols=149 Identities=21% Similarity=0.259 Sum_probs=79.4
Q ss_pred CCCHHHHHHHHhcC-CCcccccccc-hHHHHhcCCCchhhHH---HHHHHHHHCCCcEEEecccccccCCCccccccccc
Q 026121 2 RLSTEELERLAKLG-SKAQKTARRD-IAHVVATRGNGATTVS---ATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSD 76 (243)
Q Consensus 2 GLs~~ele~la~~~-~~~~K~SrRD-l~~~~a~~~~GaTTVa---aTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaD 76 (243)
|.|.+||.-+.+.- +...++..-| .-..+..+.+|.-|.- ...+++..+|++|+-.|+=+=-++.+ |+|
T Consensus 49 get~~El~g~~~a~~~~~~~~~~~~~~iDi~gtggdg~~t~nis~~~a~vlA~~G~~V~kHG~~~~~s~~G------sad 122 (339)
T PRK00188 49 GETVDEIAGAARAMREHAVPVPDPDDAVDIVGTGGDGANTFNISTAAAFVAAAAGVKVAKHGNRSVSSKSG------SAD 122 (339)
T ss_pred CCCHHHHHHHHHHHHHhCCcCCCCCCCCcccCCCCCCCCccchHHHHHHHHHhCCCEEEEECCCCCCCCcC------HHH
Confidence 67889988887521 1222333222 1112355656655432 45677788899999999744322221 455
Q ss_pred hhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCC
Q 026121 77 LTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGS 156 (243)
Q Consensus 77 L~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~ 156 (243)
+-|-- |.+--++.....+.|+.+|+.-+ |..+.+|+| .+++..+++||+++
T Consensus 123 vLe~l---------Gi~~~~~~~~~~~~l~~~g~~fl-~a~~~~P~l-------------------~~l~~lR~~Lg~Rt 173 (339)
T PRK00188 123 VLEAL---------GVNLDLSPEQVARCLEEVGIGFL-FAPLYHPAM-------------------KHVAPVRKELGIRT 173 (339)
T ss_pred HHHHc---------CCCCCCCHHHHHHHHHHcCcEEe-eCcccCHHH-------------------HHHHHHHHHhCCCC
Confidence 55532 33333355555666666665532 222333333 45666778888766
Q ss_pred e----EEEEeCCCcCCCCC---hHHHHHHHHHHHHH
Q 026121 157 G----LVIGVPIPREHAAS---GRVIESAIQSALRE 185 (243)
Q Consensus 157 g----~lvanPiP~e~~~~---~~~i~~~I~~Al~e 185 (243)
- --+.||...++.+- .........++++.
T Consensus 174 ~fN~l~~L~NP~~~~~~v~Gv~h~~~~~~~a~~l~~ 209 (339)
T PRK00188 174 IFNLLGPLTNPARPKRQLIGVYSPDLLEPMAEVLKR 209 (339)
T ss_pred HHHHHHHhcCCCCCCCEEEeecCHHHHHHHHHHHHH
Confidence 3 13567777776643 23333444455543
No 10
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=84.14 E-value=17 Score=36.15 Aligned_cols=166 Identities=16% Similarity=0.152 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHhc---CCCcccccc-cc-hHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccc
Q 026121 2 RLSTEELERLAKL---GSKAQKTAR-RD-IAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSD 76 (243)
Q Consensus 2 GLs~~ele~la~~---~~~~~K~Sr-RD-l~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaD 76 (243)
|+|.+|+..|++. .....+.+. ++ +-..+..|..|--|.=...+++..+|++|-=.||=|=-|.++ |+|
T Consensus 49 G~t~~Ei~~lt~aM~~sg~~~~~~~~~~~~vD~~gTGGdG~kt~ni~a~ivAA~Gv~VaKhgnR~lss~~G------TaD 122 (434)
T PRK06078 49 DMTDRERADLTMAMVNSGDTIDLSAIEGIKVDKHSTGGVGDTTTLVLAPLVAAFGVPVAKMSGRGLGHTGG------TID 122 (434)
T ss_pred CCCHHHHHHHHHHHHHhCCcccCcccCCCeeEecCCCCCCCCchHHHHHHHHcCCCCeeeeCCCCcCCCcc------hHH
Confidence 8999999998762 112233331 11 334556677776666667888889999999999966557765 566
Q ss_pred hhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcce---e-ecC-CCcccCccCCCHHHH-HHHHHHHH
Q 026121 77 LTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAF---F-TET-SGSKVPCRVDSPEDC-ARLIDVNM 150 (243)
Q Consensus 77 L~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaF---y-~~~-Sg~~~~~r~d~~~e~-A~~~~~~~ 150 (243)
.-|-= .|.+-=|+...-.+.|+..|+.+++-..+.-|++ | .|+ .+ .+|+.--+ +.||..+-
T Consensus 123 ~LE~l--------pG~~~~ls~e~~~~~l~~~G~~fl~~a~~~~PAdk~v~~lR~v~~-----t~n~lPLi~~SImSKKl 189 (434)
T PRK06078 123 KLESI--------KGFHVEISQEDFIKLVNENKVAVIGQSGNLTPADKKLYALRDVTA-----TVNSIPLIASSIMSKKI 189 (434)
T ss_pred HHHhC--------CCCCCCCCHHHHHHHHHHhCcEEEccCCCcChhhhhhHHHhcccc-----ccChHHhhhhHhhhhhh
Confidence 55521 3777778888999999999999996556666774 2 233 22 25554333 35555555
Q ss_pred hcCCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHH
Q 026121 151 KLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAR 187 (243)
Q Consensus 151 ~l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~ 187 (243)
..| ...+|+-+|.=.---+...+.-+.+.+++.+-.
T Consensus 190 Aag-~~~~vldV~~G~gAfm~~~~~a~~lA~~l~~lG 225 (434)
T PRK06078 190 AAG-ADAIVLDVKTGAGAFMKTVEDAEELAHAMVRIG 225 (434)
T ss_pred hcC-CCeEEEeeecCCCCCCCCHHHHHHHHHHHHHHH
Confidence 554 566788888655544544444455555665443
No 11
>PRK08508 biotin synthase; Provisional
Probab=84.08 E-value=33 Score=31.22 Aligned_cols=159 Identities=20% Similarity=0.180 Sum_probs=87.1
Q ss_pred CCHHHHHHHHhcCCC----cccccccchHHHHhcCCCchhh---HHHHHHHHHHCCCcEEEecccccccCCCcccccccc
Q 026121 3 LSTEELERLAKLGSK----AQKTARRDIAHVVATRGNGATT---VSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISS 75 (243)
Q Consensus 3 Ls~~ele~la~~~~~----~~K~SrRDl~~~~a~~~~GaTT---VaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSa 75 (243)
+++|+|++|.+.+-+ -.+.++ + .. .+...+-| +=.|+..|+.+||+|.. |+|=|. | |+.
T Consensus 100 ~~~e~l~~Lk~aGld~~~~~lEt~~-~---~~-~~i~~~~~~~~~l~~i~~a~~~Gi~v~s-g~I~Gl--G-Et~----- 165 (279)
T PRK08508 100 ASVEQLKELKKAGIFSYNHNLETSK-E---FF-PKICTTHTWEERFQTCENAKEAGLGLCS-GGIFGL--G-ESW----- 165 (279)
T ss_pred CCHHHHHHHHHcCCCEEcccccchH-H---Hh-cCCCCCCCHHHHHHHHHHHHHcCCeecc-eeEEec--C-CCH-----
Confidence 478888988664321 124432 2 12 33333333 34488889999997765 555553 3 221
Q ss_pred chhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCC
Q 026121 76 DLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLG 155 (243)
Q Consensus 76 DL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~ 155 (243)
=|+-.++.+|...++--+-++ ||.+..|.+.-..--+++|.-+++..-+-+ |+
T Consensus 166 --------------------ed~~~~l~~lr~L~~~svpl~------~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~-lp 218 (279)
T PRK08508 166 --------------------EDRISFLKSLASLSPHSTPIN------FFIPNPALPLKAPTLSADEALEIVRLAKEA-LP 218 (279)
T ss_pred --------------------HHHHHHHHHHHcCCCCEEeeC------CcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CC
Confidence 233344555555554434343 555555554322235788988888776665 66
Q ss_pred CeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCC----CCccCChHHHHHHHHHhCCccHHHHHHHHHH
Q 026121 156 SGLVIGVPIPREHAASGRVIESAIQSALREAREKNI----TGNAETPFLLARVNELTGGLSLASNIALVKN 222 (243)
Q Consensus 156 ~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~gi----~Gk~vTPflL~~i~elT~G~Sl~aNiaLv~n 222 (243)
...+-. +.- .+. .+.+-...+-..|+ .|..+| |.|++.+.-++++++
T Consensus 219 ~~~i~~---~~g----r~~---~~~~~~~~~~~~g~n~~~~g~~lt----------~~g~~~~~d~~~~~~ 269 (279)
T PRK08508 219 NARLMV---AGG----REV---VFGERQYEIFEAGANAIVIGDYLT----------TKGEAPKKDIEKLKS 269 (279)
T ss_pred Cceeee---cCC----hhh---hchhhHHHHHhcCCcceeecCccc----------CCCCChHHHHHHHHH
Confidence 554332 221 111 11112233444454 455555 589999999999886
No 12
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=83.62 E-value=11 Score=38.07 Aligned_cols=180 Identities=17% Similarity=0.163 Sum_probs=116.0
Q ss_pred CCCHHHHHHHHhc---CCCcccccccchHHHHhcCCC-ch-hhHHHHHHHHHHCCCcEEEecccccccCCCccccccccc
Q 026121 2 RLSTEELERLAKL---GSKAQKTARRDIAHVVATRGN-GA-TTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSD 76 (243)
Q Consensus 2 GLs~~ele~la~~---~~~~~K~SrRDl~~~~a~~~~-Ga-TTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaD 76 (243)
|+|.+|+..|++. .....+.+...+-..+..|.. |- |+++ ...+...+|++|-=+||=|=-|.++ |+|
T Consensus 132 G~t~~Ei~~lt~AM~~sg~~l~~~~~~~vDkhgTGGd~gnk~ni~-~apIvAA~Gv~VaKhsnRaits~sG------TAD 204 (493)
T TIGR02645 132 GMTMDEIEALTIAMADTGEMLEWDREPIMDKHSIGGVPGNKTSLI-VVPIVAAAGLLIPKTSSRAITSAAG------TAD 204 (493)
T ss_pred CCCHHHHHHHHHHHHHhCCCccCCCCCeEEEeCCCCCCCCCEeHH-HHHHHHhCCCCeeeeCCCCcCCCcc------HHH
Confidence 8999999998762 112334443333333344444 33 3444 4556689999999999877666665 566
Q ss_pred hhh-hcCCCeEEEecccccccchhhhHhHhhhCCee-EEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCC
Q 026121 77 LTE-LGRTPVAVVSAGIKSILDIPRTLEYLETHGVC-VAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKL 154 (243)
Q Consensus 77 L~e-L~rtpV~VVcaG~KsILDi~~TLE~LET~GV~-V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l 154 (243)
..| | | +-=|+.....+.||..|.+ +.|-..+--|++=- -..++-+..+|+.-.++.-|.++.----
T Consensus 205 ~LE~L----------g-~v~ls~e~~~~~ve~~G~~fl~G~a~~l~PAdk~-i~~vR~~l~vds~~li~aSImSKKlA~G 272 (493)
T TIGR02645 205 TMEVL----------T-RVALSAEEIKRIVEKVGGCLVWGGALNLAPADDV-LIRVERPLSIDPRAQMLASIMSKKIAAG 272 (493)
T ss_pred HHHHh----------c-CCCCCHHHHHHHHHHCCEEEEECCCcccCHHHHH-HHHHHhhcCCCcHHHHHHHHHHHHHhcC
Confidence 655 4 3 3347888999999999998 66655666777521 1122225678888887776666665555
Q ss_pred CCeEEEEeCCCcCCCCChHHHHHHHHHHHHH-HHHcCCC------------CccCChHH
Q 026121 155 GSGLVIGVPIPREHAASGRVIESAIQSALRE-AREKNIT------------GNAETPFL 200 (243)
Q Consensus 155 ~~g~lvanPiP~e~~~~~~~i~~~I~~Al~e-a~~~gi~------------Gk~vTPfl 200 (243)
...+|+=+|+=.---+...+--+-+.+.+.+ +++.|++ |+.+=|.|
T Consensus 273 ~~~lvlDvk~G~gAf~~~~~~A~~La~~~~~vg~~~G~~~~a~iTdm~qPlG~~iGnal 331 (493)
T TIGR02645 273 STHVLIDIPVGPGAKVRSLQEAERLARLFIELGDRLGVRVECAITYGSQPIGRGIGPAL 331 (493)
T ss_pred CCeEEEeccccCCCcCCCHHHHHHHHHHHHHHHHHcCCeEEEEECCCCCccccccCcHH
Confidence 7889999999776666555544455555443 4555663 77777776
No 13
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=83.31 E-value=2.7 Score=35.22 Aligned_cols=105 Identities=17% Similarity=0.288 Sum_probs=59.7
Q ss_pred EEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccC
Q 026121 54 VFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVP 133 (243)
Q Consensus 54 VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~ 133 (243)
+.+|||.||+-+ -+..-|.+-+...+++++--...=-+....++.|+.+|+.|.=+ .
T Consensus 3 ylitGG~gglg~------~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~-----------------~ 59 (181)
T PF08659_consen 3 YLITGGLGGLGQ------SLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYV-----------------Q 59 (181)
T ss_dssp EEEETTTSHHHH------HHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEE-----------------E
T ss_pred EEEECCccHHHH------HHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeee-----------------c
Confidence 578999999833 56667777666666666655433344557899999999987633 2
Q ss_pred ccCCCHHHHHHHHHHHHhc-CCCCeEEEEeCCCcCCC---CChHHHHHHHHH
Q 026121 134 CRVDSPEDCARLIDVNMKL-KLGSGLVIGVPIPREHA---ASGRVIESAIQS 181 (243)
Q Consensus 134 ~r~d~~~e~A~~~~~~~~l-~l~~g~lvanPiP~e~~---~~~~~i~~~I~~ 181 (243)
..+.+++++.+++..-.+- +-=.|++-+-.++.+.. .+.+.++..++-
T Consensus 60 ~Dv~d~~~v~~~~~~~~~~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~ 111 (181)
T PF08659_consen 60 CDVTDPEAVAAALAQLRQRFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAP 111 (181)
T ss_dssp --TTSHHHHHHHHHTSHTTSS-EEEEEE-------B-GCC--HHHHHHHHHH
T ss_pred cCccCHHHHHHHHHHHHhccCCcceeeeeeeeecccccccCCHHHHHHHHhh
Confidence 3466889999888754433 23356777776666543 345555554443
No 14
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=83.26 E-value=6.8 Score=36.82 Aligned_cols=150 Identities=23% Similarity=0.264 Sum_probs=85.1
Q ss_pred CCCHHHHHHHHhcC-CCcccccc---cchHHHHhcCCCchhh---HHHHHHHHHHCCCcEEEecccccccCCCccccccc
Q 026121 2 RLSTEELERLAKLG-SKAQKTAR---RDIAHVVATRGNGATT---VSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDIS 74 (243)
Q Consensus 2 GLs~~ele~la~~~-~~~~K~Sr---RDl~~~~a~~~~GaTT---VaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiS 74 (243)
|.|.+||.-+++.- +...++.. .++-..+..+.+|--| -....+++..+|+||+-.|+=+=-.+- =|
T Consensus 43 get~~Elag~~~a~~~~~~~~~~~~~~~~iD~~gtggdg~~t~nist~~a~vlA~~G~~V~kHG~r~~~s~~------Gs 116 (330)
T TIGR01245 43 GETPEEITGFAKAMREHAVKVPGRPVEDLVDIVGTGGDGANTINISTASAFVAAAAGVKVAKHGNRSVSSKS------GS 116 (330)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccCCCcccccCCCCCCCCccccHHHHHHHHHhCCCEEEEeCCCCCCCCc------cH
Confidence 78899998887621 12223322 1222234556566654 124456777889999999963311111 14
Q ss_pred cchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCC
Q 026121 75 SDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKL 154 (243)
Q Consensus 75 aDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l 154 (243)
+|+-|- -|.+--++.....+.||.+|+..+. ..+.+|+ ..+++..++.||+
T Consensus 117 ~d~le~---------LGi~~~~s~~~~~~~l~~~g~~f~~-~~~~~P~-------------------~~~l~~lR~~lg~ 167 (330)
T TIGR01245 117 ADVLEA---------LGVNLDLGPEKVARSLEETGIGFLF-APLYHPA-------------------MKHVAPVRRELGV 167 (330)
T ss_pred HHHHHH---------cCCCCCCCHHHHHHHHHHhCcEEee-chhhCHH-------------------HHHHHHHHHHhCC
Confidence 565552 2344445666677777888876542 2233333 3567778888887
Q ss_pred CCeE----EEEeCCCcCCCCC---hHHHHHHHHHHHHHH
Q 026121 155 GSGL----VIGVPIPREHAAS---GRVIESAIQSALREA 186 (243)
Q Consensus 155 ~~g~----lvanPiP~e~~~~---~~~i~~~I~~Al~ea 186 (243)
++-+ =+.||...++.+- .....+...++++.-
T Consensus 168 rT~~N~lgpL~NP~~~~~~v~Gv~~~~~~~~~a~~~~~l 206 (330)
T TIGR01245 168 RTVFNLLGPLTNPARPKYQVIGVYDPDLVEVMAEALKNL 206 (330)
T ss_pred CCHHHHHHHhcCCCCCCCEEEcccCHHHHHHHHHHHHHh
Confidence 7742 3578887777643 334444555555543
No 15
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=81.42 E-value=1.6 Score=36.79 Aligned_cols=65 Identities=25% Similarity=0.299 Sum_probs=50.4
Q ss_pred CCCcEEEecccccccCCCccccccccchhhhcCCCeEEE-ecccccccchhhhHhHhhhCCeeEEee
Q 026121 50 VGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVV-SAGIKSILDIPRTLEYLETHGVCVAAY 115 (243)
Q Consensus 50 aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VV-caG~KsILDi~~TLE~LET~GV~V~gy 115 (243)
..=.+..-=|.||..-+.... +..+||..-=..||++| +.+-.+|=++-.|+|+|+.+|+++.|.
T Consensus 98 ~~~D~vlVEGag~~~~~~~~~-~~n~dia~~L~a~vIlV~~~~~g~i~~~l~~~~~~~~~g~~v~Gv 163 (199)
T PF13500_consen 98 EEYDVVLVEGAGGLMVPIFSG-DLNADIAKALGAPVILVASGRLGTINHTLLTIEALKQRGIRVLGV 163 (199)
T ss_dssp TTTCEEEEEESSSTTSECCTT-EEHHHHHHHHT-EEEEEEESSTTHHHHHHHHHHHHHCTTS-EEEE
T ss_pred hcCCEEEEeCCcccCcccccC-hHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 466888999999998654333 77888888778886655 455678888999999999999999998
No 16
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=76.92 E-value=2.8 Score=37.37 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=17.9
Q ss_pred HhHhhhCCeeEEeeccCCCcceeecCC
Q 026121 102 LEYLETHGVCVAAYKTNEFPAFFTETS 128 (243)
Q Consensus 102 LE~LET~GV~V~gy~td~fPaFy~~~S 128 (243)
-+.|-.+||||+|+.+-. -||+++|
T Consensus 22 a~~l~~~G~~VvGvdsl~--Yfw~~rt 46 (192)
T PF06057_consen 22 AEALAKQGVPVVGVDSLR--YFWSERT 46 (192)
T ss_pred HHHHHHCCCeEEEechHH--HHhhhCC
Confidence 478999999999997533 3555443
No 17
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=75.50 E-value=31 Score=35.03 Aligned_cols=177 Identities=17% Similarity=0.200 Sum_probs=112.6
Q ss_pred CCCHHHHHHHHhc---CCCcccccccchHHHHhcCCC-ch-hhHHHHHHHHHHCCCcEEEecccccccCCCccccccccc
Q 026121 2 RLSTEELERLAKL---GSKAQKTARRDIAHVVATRGN-GA-TTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSD 76 (243)
Q Consensus 2 GLs~~ele~la~~---~~~~~K~SrRDl~~~~a~~~~-Ga-TTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaD 76 (243)
|||.+|+..|++. .......+...+-..++.|.. |- |+++...++ ..+|++|-=+||=|=-|.++ |+|
T Consensus 133 G~t~~Eia~lt~AM~~sg~~l~~~~~~vvDkhgTGGd~gnk~nl~~apIV-AA~Gv~VaKhsnRaits~sG------TaD 205 (500)
T TIGR03327 133 GMDMDEIEWLTRAMAETGDMLSFDRHPIMDKHSIGGVPGNKISLLVVPIV-AAAGLTIPKTSSRAITSAAG------TAD 205 (500)
T ss_pred CCCHHHHHHHHHHHHHhCCcccCCCCCeEEEeCCCCCCCCCEEHHHHHHH-HhCCCCeeeeCCCCcCCCcc------HHH
Confidence 8999999988752 113344443222233344444 22 355544444 55899999999877777765 566
Q ss_pred hhh-hcCCCeEEEecccccccchhhhHhHhhhCCeeE-EeeccCCCcce---eecCCCcccCccCCCHHHHHHHHHHHHh
Q 026121 77 LTE-LGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV-AAYKTNEFPAF---FTETSGSKVPCRVDSPEDCARLIDVNMK 151 (243)
Q Consensus 77 L~e-L~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V-~gy~td~fPaF---y~~~Sg~~~~~r~d~~~e~A~~~~~~~~ 151 (243)
..| |. +-=|+.....+.+|..|.+. +|-..+--||+ |.-+ + +..+|+.-.++.-|.++.-
T Consensus 206 ~LEsL~-----------~v~ls~e~~~~~v~~~G~~fl~Gqa~~l~PAdk~l~alr---d-t~tvds~~li~aSImSKKl 270 (500)
T TIGR03327 206 VMEVLA-----------PVEFSADEIKRIVEKTGGCLVWGGATNLAPADDKIIKVE---R-PLSIDPRGQMLASVMAKKG 270 (500)
T ss_pred HHHHhh-----------CCCCCHHHHHHHHHHCCEEEEECCccccCHHHHHHHHhc---c-ccCCCcHHHHHHHHHHHHH
Confidence 665 32 23356777888899999876 54445666764 4332 2 6689998888777776666
Q ss_pred cCCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHH-HHHcCCC------------CccCChHH
Q 026121 152 LKLGSGLVIGVPIPREHAASGRVIESAIQSALRE-AREKNIT------------GNAETPFL 200 (243)
Q Consensus 152 l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~e-a~~~gi~------------Gk~vTPfl 200 (243)
---...+|+=+|+=.---+...+--+-+.+.+.+ +++.|++ |..+=|.|
T Consensus 271 A~G~d~lvlDVk~G~gAfm~~~~~A~~LA~~mv~vg~~~G~~~~a~iTdm~qPlG~~iGnaL 332 (500)
T TIGR03327 271 AIGADHVVIDIPVGKGAKVKTVEEGRKLARDFIELGDRLGMNVECAITYGGQPIGRAIGPAL 332 (500)
T ss_pred HcCCCeEEEEcCcCCCCcCCCHHHHHHHHHHHHHHHHHcCCeEEEEECCCCCccccccCcHH
Confidence 6667889999999776666554444444444433 4555663 67777775
No 18
>PRK06256 biotin synthase; Validated
Probab=74.99 E-value=69 Score=29.45 Aligned_cols=164 Identities=21% Similarity=0.259 Sum_probs=87.6
Q ss_pred CCHHHHHHHHhcCCCccc----ccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchh
Q 026121 3 LSTEELERLAKLGSKAQK----TARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLT 78 (243)
Q Consensus 3 Ls~~ele~la~~~~~~~K----~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~ 78 (243)
++++++++|.+.+-+..- .|.+-++.. .++.+-- .+--++..++.+||+| .+|+|=|. | |
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i-~~~~t~~-~~i~~i~~a~~~Gi~v-~~~~I~Gl--g-E---------- 213 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNV-VTTHTYE-DRIDTCEMVKAAGIEP-CSGGIIGM--G-E---------- 213 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhc-CCCCCHH-HHHHHHHHHHHcCCee-ccCeEEeC--C-C----------
Confidence 577888888775422111 132222222 2222211 2236788899999974 55666664 3 1
Q ss_pred hhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccC-ccCCCHHHHHHHHHHHHhcCCCCe
Q 026121 79 ELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVP-CRVDSPEDCARLIDVNMKLKLGSG 157 (243)
Q Consensus 79 eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~-~r~d~~~e~A~~~~~~~~l~l~~g 157 (243)
+.=|+-.++++|...++.-+.+. ||.+-.|-+.. ...-+++|..+++..-+- =+|..
T Consensus 214 ---------------t~ed~~~~~~~l~~l~~~~v~i~------~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl-~~p~~ 271 (336)
T PRK06256 214 ---------------SLEDRVEHAFFLKELDADSIPIN------FLNPIPGTPLENHPELTPLECLKTIAIFRL-INPDK 271 (336)
T ss_pred ---------------CHHHHHHHHHHHHhCCCCEEeec------ccccCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCC
Confidence 22345568888888887655543 34433332221 123478888887775444 34544
Q ss_pred EEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCC-CCccCChHHHHHHHHHhCCccHHHHHHHHHH
Q 026121 158 LVIGVPIPREHAASGRVIESAIQSALREAREKNI-TGNAETPFLLARVNELTGGLSLASNIALVKN 222 (243)
Q Consensus 158 ~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~gi-~Gk~vTPflL~~i~elT~G~Sl~aNiaLv~n 222 (243)
.|-.+=..+..+. ..+ ..++ +...++ .|..+| |.|++.+.++++++.
T Consensus 272 -~I~~~~gr~~~~~--~~~---~~~~--~g~~~~~~g~~lt----------~~g~~~~~d~~~~~~ 319 (336)
T PRK06256 272 -EIRIAGGREVNLR--SLQ---PLGL--GGANSVIVGNYLT----------TVGQPATADLDMIED 319 (336)
T ss_pred -eeEecCchhhhch--hhH---HHHh--ccCceeeECCccc----------CCCCChHHHHHHHHH
Confidence 3333322222221 111 1122 233333 577765 899999999999886
No 19
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=73.66 E-value=68 Score=28.80 Aligned_cols=157 Identities=17% Similarity=0.134 Sum_probs=93.2
Q ss_pred HHHHHHHHCCCcEEEecccccccC-CCccccccc-cchh-------hhcCCCeEE-EecccccccchhhhHhHhhhCCee
Q 026121 42 ATMFFASMVGIPVFVTGGIGGVHR-HGEHTMDIS-SDLT-------ELGRTPVAV-VSAGIKSILDIPRTLEYLETHGVC 111 (243)
Q Consensus 42 aTm~lA~~aGI~VFaTGGIGGVHr-gae~t~DiS-aDL~-------eL~rtpV~V-VcaG~KsILDi~~TLE~LET~GV~ 111 (243)
.+..++..+|+++..|||-+.-.- |-..+-.++ .|+. .-..+||.+ .-.|--+..++.+|.+.|+..||.
T Consensus 20 ~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~ 99 (243)
T cd00377 20 LSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAA 99 (243)
T ss_pred HHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence 467888999999999999876532 655555555 2222 234567555 334544778899999999999987
Q ss_pred EEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhc-CC-CCeEEEEeCCCcCCC-CChHHHHHHHHHHHHHHHH
Q 026121 112 VAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKL-KL-GSGLVIGVPIPREHA-ASGRVIESAIQSALREARE 188 (243)
Q Consensus 112 V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l-~l-~~g~lvanPiP~e~~-~~~~~i~~~I~~Al~ea~~ 188 (243)
-+-.-...+|.= -|+--.+.+-+++|..+.+++-.+. .- +.-+|++.= +.. ....-++++|++|.+.++
T Consensus 100 gv~iED~~~~k~----~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiART---Da~~~~~~~~~eai~Ra~ay~~- 171 (243)
T cd00377 100 GIHIEDQVGPKK----CGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIART---DALLAGEEGLDEAIERAKAYAE- 171 (243)
T ss_pred EEEEecCCCCcc----ccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEc---CchhccCCCHHHHHHHHHHHHH-
Confidence 776655544432 2222345566788887777754443 21 456676662 111 111346777877765443
Q ss_pred cCCC-----CccCChHHHHHHHHH
Q 026121 189 KNIT-----GNAETPFLLARVNEL 207 (243)
Q Consensus 189 ~gi~-----Gk~vTPflL~~i~el 207 (243)
.|-. |.. ++--++++.+.
T Consensus 172 AGAD~v~v~~~~-~~~~~~~~~~~ 194 (243)
T cd00377 172 AGADGIFVEGLK-DPEEIRAFAEA 194 (243)
T ss_pred cCCCEEEeCCCC-CHHHHHHHHhc
Confidence 3433 333 44444555544
No 20
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=73.66 E-value=3.4 Score=36.15 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=46.0
Q ss_pred CCCcEEEecccccccCCCccccccccchhhhcCCCeEEEe-cccccccchhhhHhHhhhCCeeEEeec
Q 026121 50 VGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVS-AGIKSILDIPRTLEYLETHGVCVAAYK 116 (243)
Q Consensus 50 aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVc-aG~KsILDi~~TLE~LET~GV~V~gy~ 116 (243)
..-.+..-=|.||++-+-...... .|+..--..||++|+ .+.-+|=+.-.|+|+|..+|+++.|+=
T Consensus 104 ~~~D~VlVEGaGgl~~p~~~~~~~-~d~~~~~~~pvilV~~~~lg~in~~lLt~~~l~~~~~~~~gvV 170 (231)
T PRK12374 104 EKVDHVVVEGTGGWRSLMNDLRPL-SEWVVQEQLPVLMVVGIQEGCINHALLTAQAIANDGLPLIGWV 170 (231)
T ss_pred hhCCEEEEECCCCcceeccCcccH-HHHHHHhCCCEEEEECCCcChHHHHHHHHHHHHhCCCcEEEEE
Confidence 455677766777776654332222 255555589988887 223338888899999999999999984
No 21
>PRK13947 shikimate kinase; Provisional
Probab=71.98 E-value=8.9 Score=31.08 Aligned_cols=77 Identities=21% Similarity=0.186 Sum_probs=45.7
Q ss_pred CCCchhhHHHHHHHHHHCCCcEEEecccccccCCCcc-----------cccccc-chhhhcCCCeEEEecccccccchhh
Q 026121 33 RGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEH-----------TMDISS-DLTELGRTPVAVVSAGIKSILDIPR 100 (243)
Q Consensus 33 ~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~-----------t~DiSa-DL~eL~rtpV~VVcaG~KsILDi~~ 100 (243)
..+|.||+| -.||+..|++++-+.=+---+-|-.. -.|.-. =+.+|..-.-+||+.|.--++| +.
T Consensus 10 ~GsGKst~a--~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g~vl~-~~ 86 (171)
T PRK13947 10 MGTGKTTVG--KRVATTLSFGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGGVVLN-PE 86 (171)
T ss_pred CCCCHHHHH--HHHHHHhCCCEEECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCCCcCC-HH
Confidence 468999998 47789999998765532111111100 000000 0334654445667888777888 47
Q ss_pred hHhHhhhCCeeE
Q 026121 101 TLEYLETHGVCV 112 (243)
Q Consensus 101 TLE~LET~GV~V 112 (243)
++++|+..|+.|
T Consensus 87 ~~~~l~~~~~vv 98 (171)
T PRK13947 87 NVVQLRKNGVVI 98 (171)
T ss_pred HHHHHHhCCEEE
Confidence 899998887533
No 22
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=71.42 E-value=31 Score=30.20 Aligned_cols=12 Identities=33% Similarity=0.744 Sum_probs=10.0
Q ss_pred cEEEeccccccc
Q 026121 53 PVFVTGGIGGVH 64 (243)
Q Consensus 53 ~VFaTGGIGGVH 64 (243)
+|++|||-|.|-
T Consensus 1 ~ilVtGatG~iG 12 (285)
T TIGR03649 1 TILLTGGTGKTA 12 (285)
T ss_pred CEEEEcCCChHH
Confidence 589999999883
No 23
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=71.40 E-value=27 Score=31.74 Aligned_cols=116 Identities=22% Similarity=0.175 Sum_probs=77.3
Q ss_pred ccccchhhhHhHhhhCCeeEEeec-cCCCcceeecCCCcccCcc------------------CCCHHHHHHHHHHHHhcC
Q 026121 93 KSILDIPRTLEYLETHGVCVAAYK-TNEFPAFFTETSGSKVPCR------------------VDSPEDCARLIDVNMKLK 153 (243)
Q Consensus 93 KsILDi~~TLE~LET~GV~V~gy~-td~fPaFy~~~Sg~~~~~r------------------~d~~~e~A~~~~~~~~l~ 153 (243)
|=.-.+..-++.||.+|+.++-.= |.+||.|.++.. +=-|.| +-.+++++...+....++
T Consensus 71 ~v~~~lq~~i~~le~~G~d~illlCTG~F~~l~~~~~-lleP~ril~~lV~al~~~~~vGVivP~~eQ~~~~~~kW~~l~ 149 (221)
T PF07302_consen 71 KVEPRLQACIAQLEAQGYDVILLLCTGEFPGLTARNP-LLEPDRILPPLVAALVGGHQVGVIVPLPEQIAQQAEKWQPLG 149 (221)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEeccCCCCCCCCCcc-eeehHHhHHHHHHHhcCCCeEEEEecCHHHHHHHHHHHHhcC
Confidence 344467777889999999999984 999999998885 444443 345677776555555566
Q ss_pred CCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCCC-----CccCChHHHHHHHHHhCCccHHHHH
Q 026121 154 LGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNIT-----GNAETPFLLARVNELTGGLSLASNI 217 (243)
Q Consensus 154 l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~-----Gk~vTPflL~~i~elT~G~Sl~aNi 217 (243)
-+--...++|.= -+.++ +.+|=++-.++|.. ==-+|-..-+.+.+.++.--+=+|.
T Consensus 150 ~~~~~a~asPy~----~~~~~----l~~Aa~~L~~~gadlIvLDCmGYt~~~r~~~~~~~g~PVlLsr~ 210 (221)
T PF07302_consen 150 NPVVVAAASPYE----GDEEE----LAAAARELAEQGADLIVLDCMGYTQEMRDIVQRALGKPVLLSRT 210 (221)
T ss_pred CCeEEEEeCCCC----CCHHH----HHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHhCCCEEeHHH
Confidence 666677777752 22333 33355555555542 2236788888899988887776664
No 24
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=67.38 E-value=11 Score=38.30 Aligned_cols=65 Identities=23% Similarity=0.344 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcC-CC-eEEEeccc--ccccchhhhHhHhhhCCeeE
Q 026121 37 ATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGR-TP-VAVVSAGI--KSILDIPRTLEYLETHGVCV 112 (243)
Q Consensus 37 aTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~r-tp-V~VVcaG~--KsILDi~~TLE~LET~GV~V 112 (243)
|--..-+-.++....|||.|.||+|-. .|+.+|-+ +. .++.+++. ---.+|+..-+||...|++|
T Consensus 468 G~d~~l~~~v~~~~~ipviasGG~g~~-----------~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~~~gi~v 536 (538)
T PLN02617 468 GFDIELVKLVSDAVTIPVIASSGAGTP-----------EHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLLEEGIET 536 (538)
T ss_pred CcCHHHHHHHHhhCCCCEEEECCCCCH-----------HHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHHHCCCcc
Confidence 334556667888999999999999954 46666665 43 57777765 33578999999999999987
No 25
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=65.80 E-value=29 Score=32.96 Aligned_cols=149 Identities=21% Similarity=0.240 Sum_probs=97.8
Q ss_pred HHHHHHHHCCCcEEEecccc-----cccCCCccccc----cccchhhhcCCCeEE-EecccccccchhhhHhHhhhCCee
Q 026121 42 ATMFFASMVGIPVFVTGGIG-----GVHRHGEHTMD----ISSDLTELGRTPVAV-VSAGIKSILDIPRTLEYLETHGVC 111 (243)
Q Consensus 42 aTm~lA~~aGI~VFaTGGIG-----GVHrgae~t~D----iSaDL~eL~rtpV~V-VcaG~KsILDi~~TLE~LET~GV~ 111 (243)
.+..++..+|-+...|+|-| |.--++..||| .-.+++...+.||.| +=+|--.-+.+.+|...||..|+-
T Consensus 29 ~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~a 108 (289)
T COG2513 29 GSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGAA 108 (289)
T ss_pred HHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCcc
Confidence 56789999999999999865 33334444554 466778888999988 567877789999999999999998
Q ss_pred EEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCC-CCeEEEEeCCCcCCCCChHHHHHHHHHHHHHH--HH
Q 026121 112 VAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKL-GSGLVIGVPIPREHAASGRVIESAIQSALREA--RE 188 (243)
Q Consensus 112 V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l-~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea--~~ 188 (243)
=+-.-...+|.=..+-.| ..+-+++|.++-|++-.+-.- +.=++++.- ++.-.+-++++|++|.... ..
T Consensus 109 gi~iEDq~~pk~cgh~~g----k~l~~~~e~v~rIkAa~~a~~~~~fvi~ART----da~~~~~ld~AI~Ra~AY~eAGA 180 (289)
T COG2513 109 GIHIEDQVGPKRCGHLPG----KELVSIDEMVDRIKAAVEARRDPDFVIIART----DALLVEGLDDAIERAQAYVEAGA 180 (289)
T ss_pred eeeeeecccchhcCCCCC----CCcCCHHHHHHHHHHHHHhccCCCeEEEeeh----HHHHhccHHHHHHHHHHHHHcCC
Confidence 777777888853322233 344567777777776555432 444555442 2222223788888776543 34
Q ss_pred cCCCCccCCh
Q 026121 189 KNITGNAETP 198 (243)
Q Consensus 189 ~gi~Gk~vTP 198 (243)
..|-=..++.
T Consensus 181 D~if~~al~~ 190 (289)
T COG2513 181 DAIFPEALTD 190 (289)
T ss_pred cEEccccCCC
Confidence 4453333333
No 26
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=63.62 E-value=22 Score=33.96 Aligned_cols=151 Identities=19% Similarity=0.193 Sum_probs=84.1
Q ss_pred CCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCC-eeEEeeccCCCcceeecCCC
Q 026121 51 GIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHG-VCVAAYKTNEFPAFFTETSG 129 (243)
Q Consensus 51 GI~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~G-V~V~gy~td~fPaFy~~~Sg 129 (243)
-..|+++||--|...=.+.=.+..+.|.+ ++-|+...-|.- +.+..+.+...| +.|..| .++++..|....-
T Consensus 183 ~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~----~~~v~~~~G~~~--~~~~~~~~~~~~~~~v~~f-~~dm~~~~~~ADL 255 (357)
T COG0707 183 KKTILVTGGSQGAKALNDLVPEALAKLAN----RIQVIHQTGKND--LEELKSAYNELGVVRVLPF-IDDMAALLAAADL 255 (357)
T ss_pred CcEEEEECCcchhHHHHHHHHHHHHHhhh----CeEEEEEcCcch--HHHHHHHHhhcCcEEEeeH-HhhHHHHHHhccE
Confidence 46789999999886644444455666665 555555444443 677778888888 555555 4558888876554
Q ss_pred cccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHc-CCCCccCChHHH-HHHHHH
Q 026121 130 SKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREK-NITGNAETPFLL-ARVNEL 207 (243)
Q Consensus 130 ~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~-gi~Gk~vTPflL-~~i~el 207 (243)
+=.=----+..|++. +|+| .|.+|.|.. .+.++... .+.+.++... -+.-.++||=.| +.|.++
T Consensus 256 vIsRaGa~Ti~E~~a-------~g~P---~IliP~p~~--~~~~Q~~N--A~~l~~~gaa~~i~~~~lt~~~l~~~i~~l 321 (357)
T COG0707 256 VISRAGALTIAELLA-------LGVP---AILVPYPPG--ADGHQEYN--AKFLEKAGAALVIRQSELTPEKLAELILRL 321 (357)
T ss_pred EEeCCcccHHHHHHH-------hCCC---EEEeCCCCC--ccchHHHH--HHHHHhCCCEEEeccccCCHHHHHHHHHHH
Confidence 333222345556554 3555 455566664 23333211 2334443332 236777787544 334443
Q ss_pred hCCccHHHHHHHHHHHHH
Q 026121 208 TGGLSLASNIALVKNNAL 225 (243)
Q Consensus 208 T~G~Sl~aNiaLv~nNA~ 225 (243)
-.- ..++.-..+|++
T Consensus 322 ~~~---~~~l~~m~~~a~ 336 (357)
T COG0707 322 LSN---PEKLKAMAENAK 336 (357)
T ss_pred hcC---HHHHHHHHHHHH
Confidence 332 455665655554
No 27
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=63.54 E-value=3.5 Score=36.71 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=19.9
Q ss_pred EEecccccccchhhhHhH----hhhCCeeE
Q 026121 87 VVSAGIKSILDIPRTLEY----LETHGVCV 112 (243)
Q Consensus 87 VVcaG~KsILDi~~TLE~----LET~GV~V 112 (243)
+||+|+||+=|+.++++. |...|+.+
T Consensus 64 ~VcTGaKs~ed~~~av~~~~~~L~~~g~~~ 93 (185)
T COG2101 64 VVCTGAKSVEDVHRAVKKLAKKLKDGGIDI 93 (185)
T ss_pred EEEeccCcHHHHHHHHHHHHHHHHhcCcCc
Confidence 799999999998887764 55555544
No 28
>PRK12744 short chain dehydrogenase; Provisional
Probab=63.42 E-value=52 Score=28.12 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=40.3
Q ss_pred CCCcEEEecccccccCCCccccccccchhhhcCCCeEEEec-ccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCC
Q 026121 50 VGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSA-GIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETS 128 (243)
Q Consensus 50 aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVca-G~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~S 128 (243)
.|=.|++|||-||+-+ .+...|.+.+- .|++++. ..++-=....+.+.|+..+..+..
T Consensus 7 ~~k~vlItGa~~gIG~------~~a~~l~~~G~-~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------- 65 (257)
T PRK12744 7 KGKVVLIAGGAKNLGG------LIARDLAAQGA-KAVAIHYNSAASKADAEETVAAVKAAGAKAVA-------------- 65 (257)
T ss_pred CCcEEEEECCCchHHH------HHHHHHHHCCC-cEEEEecCCccchHHHHHHHHHHHHhCCcEEE--------------
Confidence 3557999999999844 45555655443 3344432 111211234444555554433221
Q ss_pred CcccCccCCCHHHHHHHHHH
Q 026121 129 GSKVPCRVDSPEDCARLIDV 148 (243)
Q Consensus 129 g~~~~~r~d~~~e~A~~~~~ 148 (243)
.+..+.+++++.+++..
T Consensus 66 ---~~~D~~~~~~~~~~~~~ 82 (257)
T PRK12744 66 ---FQADLTTAAAVEKLFDD 82 (257)
T ss_pred ---EecCcCCHHHHHHHHHH
Confidence 23445677777777664
No 29
>PRK10481 hypothetical protein; Provisional
Probab=62.94 E-value=1.2e+02 Score=27.53 Aligned_cols=122 Identities=18% Similarity=0.125 Sum_probs=71.4
Q ss_pred cccccccchhhhHhHhhhCCeeEEeec-cCCCcceeecCCCcccCccCC------------------CHHHHHHHHHHHH
Q 026121 90 AGIKSILDIPRTLEYLETHGVCVAAYK-TNEFPAFFTETSGSKVPCRVD------------------SPEDCARLIDVNM 150 (243)
Q Consensus 90 aG~KsILDi~~TLE~LET~GV~V~gy~-td~fPaFy~~~Sg~~~~~r~d------------------~~~e~A~~~~~~~ 150 (243)
+=.|=.-++..-++.||.+|+.++-.- |.+||+|..++.-..-|.+.= .++++.+..+.-.
T Consensus 71 s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctgdfp~l~a~r~~l~~P~~~i~~lv~Al~~g~riGVitP~~~qi~~~~~kw~ 150 (224)
T PRK10481 71 SKQKVERDLQSVIEVLDNQGYDVILLLCTGEFPSLTARNAILLEPSRILPPLVAAIVGGHQVGVIVPVEEQLAQQAQKWQ 150 (224)
T ss_pred EHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCCCccccCccccCchhhHHHHHHHhcCCCeEEEEEeCHHHHHHHHHHHH
Confidence 344556678888999999999999985 899999999777666565432 2444444444444
Q ss_pred hcCCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCC-----CCccCChHHHHHHHHHhCCccHHHHHHH
Q 026121 151 KLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNI-----TGNAETPFLLARVNELTGGLSLASNIAL 219 (243)
Q Consensus 151 ~l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~gi-----~Gk~vTPflL~~i~elT~G~Sl~aNiaL 219 (243)
.+|.+.-+..++|. ..+.+. +.+|.++-.++|. .+-.++--+-+.+.+.++---+.+|-+.
T Consensus 151 ~~G~~v~~~~aspy----~~~~~~----l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~~n~a~ 216 (224)
T PRK10481 151 VLQKPPVFALASPY----HGSEEE----LIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKALDVPVLLSNVLV 216 (224)
T ss_pred hcCCceeEeecCCC----CCCHHH----HHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHHCcCEEcHHHHH
Confidence 44444444444442 112222 2223333333443 2444454456677777776666665543
No 30
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=62.71 E-value=58 Score=30.32 Aligned_cols=51 Identities=20% Similarity=0.360 Sum_probs=39.8
Q ss_pred cCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHc
Q 026121 132 VPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREK 189 (243)
Q Consensus 132 ~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~ 189 (243)
+...+.+|+++++.++ +| -.|+|+.--|- .+-|+..|-++..+|++..+..
T Consensus 180 ~egGI~tpeda~~Ame----lG-AdgVlV~SAIt--~a~dP~~ma~af~~Av~aGr~a 230 (248)
T cd04728 180 VDAGIGTPSDAAQAME----LG-ADAVLLNTAIA--KAKDPVAMARAFKLAVEAGRLA 230 (248)
T ss_pred EeCCCCCHHHHHHHHH----cC-CCEEEEChHhc--CCCCHHHHHHHHHHHHHHHHHH
Confidence 5678889999999886 45 57888888885 3678999999888888765543
No 31
>PRK00208 thiG thiazole synthase; Reviewed
Probab=62.71 E-value=59 Score=30.29 Aligned_cols=75 Identities=21% Similarity=0.374 Sum_probs=53.4
Q ss_pred EecccccccchhhhHhHhhh-CCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCc
Q 026121 88 VSAGIKSILDIPRTLEYLET-HGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPR 166 (243)
Q Consensus 88 VcaG~KsILDi~~TLE~LET-~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~ 166 (243)
+-+| +.|.+ +.-++.+.. .+|||+ +...+.+|+++++.++ +| -.|+|+.--|-
T Consensus 155 IGsg-~gi~~-~~~i~~i~e~~~vpVI------------------veaGI~tpeda~~Ame----lG-AdgVlV~SAIt- 208 (250)
T PRK00208 155 IGSG-LGLLN-PYNLRIIIEQADVPVI------------------VDAGIGTPSDAAQAME----LG-ADAVLLNTAIA- 208 (250)
T ss_pred CCCC-CCCCC-HHHHHHHHHhcCCeEE------------------EeCCCCCHHHHHHHHH----cC-CCEEEEChHhh-
Confidence 4455 56666 444555544 367766 5568889999999886 45 57888888885
Q ss_pred CCCCChHHHHHHHHHHHHHHHHc
Q 026121 167 EHAASGRVIESAIQSALREAREK 189 (243)
Q Consensus 167 e~~~~~~~i~~~I~~Al~ea~~~ 189 (243)
.+-|+..|-++..+|++..+..
T Consensus 209 -ka~dP~~ma~af~~Av~aGr~a 230 (250)
T PRK00208 209 -VAGDPVAMARAFKLAVEAGRLA 230 (250)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHH
Confidence 3678999999998888765543
No 32
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=61.84 E-value=18 Score=33.52 Aligned_cols=75 Identities=23% Similarity=0.195 Sum_probs=49.5
Q ss_pred cccchhhhHhHhhh-----------CCeeEEeeccC----------CCcceeecCCCcccCccCCCHHHHHHHHHHHHhc
Q 026121 94 SILDIPRTLEYLET-----------HGVCVAAYKTN----------EFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKL 152 (243)
Q Consensus 94 sILDi~~TLE~LET-----------~GV~V~gy~td----------~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l 152 (243)
.|+||.+|+|.|.. .+|.++|-+.. ..-+||... --+|..+.+.. +..+
T Consensus 47 ~IIdL~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr~~~~~~V~k~A~~tg~~~i~~--Rw~pGtlTN~~--------~~~f 116 (249)
T PTZ00254 47 HIINLAKTWEKLKLAARVIAAIENPADVVVVSSRPYGQRAVLKFAQYTGASAIAG--RFTPGTFTNQI--------QKKF 116 (249)
T ss_pred EEEcHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHHHHHHhCCeEECC--cccCCCCCCcc--------cccc
Confidence 79999999999854 56777776641 123444222 34556555542 1345
Q ss_pred CCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCC
Q 026121 153 KLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNI 191 (243)
Q Consensus 153 ~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~gi 191 (243)
.+|.-++|.+|.-+ .+|++||...||
T Consensus 117 ~~P~llIV~Dp~~d-------------~qAI~EA~~lnI 142 (249)
T PTZ00254 117 MEPRLLIVTDPRTD-------------HQAIREASYVNI 142 (249)
T ss_pred CCCCEEEEeCCCcc-------------hHHHHHHHHhCC
Confidence 78999999998433 358999999887
No 33
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=61.08 E-value=8.7 Score=31.23 Aligned_cols=64 Identities=22% Similarity=0.265 Sum_probs=44.6
Q ss_pred CCCcEEEecccccccCCCccccc-cccchhhhcCCCeEEE-ecccccccchhhhHhHhhhCCeeEEee
Q 026121 50 VGIPVFVTGGIGGVHRHGEHTMD-ISSDLTELGRTPVAVV-SAGIKSILDIPRTLEYLETHGVCVAAY 115 (243)
Q Consensus 50 aGI~VFaTGGIGGVHrgae~t~D-iSaDL~eL~rtpV~VV-caG~KsILDi~~TLE~LET~GV~V~gy 115 (243)
.+-.+.+--|.||.+.+.. .+ .-+|+...=..||++| -.+..+|=++-.+.++|++.|+++.|+
T Consensus 98 ~~~D~viid~~g~~~~~~~--~~~~~~dl~~~~~~~vilV~~~~~~~~~~~~~~~~~l~~~~~~i~gv 163 (166)
T TIGR00347 98 QKYDFVLVEGAGGLCVPIT--EEYTTADLIKLLQLPVILVVRVKLGTINHTLLTVEHARQTGLTLAGV 163 (166)
T ss_pred hcCCEEEEEcCCccccCCC--CCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEE
Confidence 4556667666677665432 23 3556666546665554 456778888899999999999999986
No 34
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=60.83 E-value=37 Score=34.04 Aligned_cols=107 Identities=21% Similarity=0.311 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHhcC-CCcccccc--cchHHHHhcCCCchhh---HHHHHHHHHHCCCcEEEecccccccCCCcccccccc
Q 026121 2 RLSTEELERLAKLG-SKAQKTAR--RDIAHVVATRGNGATT---VSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISS 75 (243)
Q Consensus 2 GLs~~ele~la~~~-~~~~K~Sr--RDl~~~~a~~~~GaTT---VaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSa 75 (243)
|.|.+||.-+++.- +...++.. .+.-..+..+.+|.-| -....+++..+|+||+-.|+=+=-.+.+ |+
T Consensus 241 get~~El~g~~~a~~~~~~~~~~~~~~~~D~~gtggdg~~t~nist~~a~v~A~~G~~V~kHG~r~~ss~~G------sa 314 (534)
T PRK14607 241 GETADELAGFASVMREKSRHIPAPSPRTVDTCGTGGDGFGTFNISTTSAFVVAAAGVPVAKHGNRAVSSKSG------SA 314 (534)
T ss_pred CCCHHHHHHHHHHHHHhCCcCCCCCCCceEEccCCCCCCCccccHHHHHHHHHhCCCcEEEECCCCCCCCcc------HH
Confidence 67889988887521 12223322 1122234555555544 1245667778899999999633222211 66
Q ss_pred chhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCccee
Q 026121 76 DLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFF 124 (243)
Q Consensus 76 DL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy 124 (243)
|+-|- -|++-=+......+.|+..|+.-+ |....+|++.
T Consensus 315 dvle~---------lGv~~~~~~~~~~~~l~~~g~~fl-~ap~~~p~l~ 353 (534)
T PRK14607 315 DVLEA---------LGVKLEMTPEEAASVLRETGFSFL-FAPLFHPAMK 353 (534)
T ss_pred HHHHH---------cCCCCCCCHHHHHHHHHHhCcEEe-eccccCHHHH
Confidence 76663 355544666777788888886655 4556666664
No 35
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=60.77 E-value=27 Score=37.15 Aligned_cols=83 Identities=20% Similarity=0.205 Sum_probs=56.6
Q ss_pred CCcEEEecccccccCCCccccccccchhhhcCCCeEEEecc-cccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCC
Q 026121 51 GIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAG-IKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSG 129 (243)
Q Consensus 51 GI~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG-~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg 129 (243)
+-.+..-=|-|||+-=-..... -.||..--+-||++|+.+ ==.|=.-=.|+|+|...|++|.|+--.+ .
T Consensus 184 ~~d~vlVEGAGGl~vPl~~~~~-~~Dl~~~l~lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~--------~- 253 (817)
T PLN02974 184 GRVLALVETAGGVASPGPSGTL-QCDLYRPLRLPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIED--------H- 253 (817)
T ss_pred cCCeEEEECCCcccccCCCCCC-HHHHHHHhCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeC--------C-
Confidence 3467788899999874333222 248888778898777643 3456566689999999999999985221 1
Q ss_pred cccCccCCCHHHHHHHHHH
Q 026121 130 SKVPCRVDSPEDCARLIDV 148 (243)
Q Consensus 130 ~~~~~r~d~~~e~A~~~~~ 148 (243)
..++.+.+.+.++.
T Consensus 254 -----~~~N~~~l~~~~~~ 267 (817)
T PLN02974 254 -----GLSNEKALLSYLSN 267 (817)
T ss_pred -----ccchHHHHHHHHhc
Confidence 13777777765553
No 36
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=58.55 E-value=17 Score=28.92 Aligned_cols=74 Identities=16% Similarity=0.098 Sum_probs=55.1
Q ss_pred HHHHHHHHHHCCCcEEEecccccccCCCcc--ccccccchhhhcCC---CeEEEecccccccchhhhHhHhhhCCeeEEe
Q 026121 40 VSATMFFASMVGIPVFVTGGIGGVHRHGEH--TMDISSDLTELGRT---PVAVVSAGIKSILDIPRTLEYLETHGVCVAA 114 (243)
Q Consensus 40 VaaTm~lA~~aGI~VFaTGGIGGVHrgae~--t~DiSaDL~eL~rt---pV~VVcaG~KsILDi~~TLE~LET~GV~V~g 114 (243)
...-...-+..|+.+.-.....- .+.++ .+.+..|+.+++.. .++|++||=. |.--.++.|..+|..|+.
T Consensus 54 ~~~~~~~L~~~g~~~~~~~~~~~--~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~---Df~~~i~~lr~~G~~V~v 128 (149)
T cd06167 54 QRGFLDALRRLGFEPIQKPLRTR--GSGKKGVDVALAIDALELAYKRRIDTIVLVSGDS---DFVPLVERLRELGKRVIV 128 (149)
T ss_pred HHHHHHHHHHCCcEEEEEcceec--CCcccCccHHHHHHHHHHhhhcCCCEEEEEECCc---cHHHHHHHHHHcCCEEEE
Confidence 34555666778998887766531 12233 34568899998877 5899999977 778889999999999999
Q ss_pred eccC
Q 026121 115 YKTN 118 (243)
Q Consensus 115 y~td 118 (243)
++..
T Consensus 129 ~~~~ 132 (149)
T cd06167 129 VGFE 132 (149)
T ss_pred EccC
Confidence 9854
No 37
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=57.70 E-value=62 Score=29.41 Aligned_cols=71 Identities=20% Similarity=0.142 Sum_probs=42.5
Q ss_pred HHHHHHHHHCCCcEEEeccccccc-----CCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEE-e
Q 026121 41 SATMFFASMVGIPVFVTGGIGGVH-----RHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVA-A 114 (243)
Q Consensus 41 aaTm~lA~~aGI~VFaTGGIGGVH-----rgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~-g 114 (243)
..++.+|+..|++|++|..-.--+ .|+...+|.. |..+ ....+.++|+|.-+. +...++.|...|.-|+ |
T Consensus 179 ~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~-~~~~-~~~d~~i~~~~~~~~--~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 179 HLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAY-DTPP-EPLDAAILFAPAGGL--VPPALEALDRGGVLAVAG 254 (329)
T ss_pred HHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceecccc-ccCc-ccceEEEECCCcHHH--HHHHHHhhCCCcEEEEEe
Confidence 345678999999999886432100 0333333321 1110 134567888887664 6678999999987654 4
Q ss_pred e
Q 026121 115 Y 115 (243)
Q Consensus 115 y 115 (243)
+
T Consensus 255 ~ 255 (329)
T TIGR02822 255 I 255 (329)
T ss_pred c
Confidence 4
No 38
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=56.91 E-value=85 Score=29.53 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=98.3
Q ss_pred HHHHHHHHCCCcEEEeccccccc--CCCcc----ccc----cccchhhhcCCCeEEEe-cccccccchhhhHhHhhhCCe
Q 026121 42 ATMFFASMVGIPVFVTGGIGGVH--RHGEH----TMD----ISSDLTELGRTPVAVVS-AGIKSILDIPRTLEYLETHGV 110 (243)
Q Consensus 42 aTm~lA~~aGI~VFaTGGIGGVH--rgae~----t~D----iSaDL~eL~rtpV~VVc-aG~KsILDi~~TLE~LET~GV 110 (243)
.+..++..+|-+...|.|-+... .|-.. +|| .-.++..-...||+|=+ +|--.-+++.+|.+.||..||
T Consensus 27 ~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGa 106 (294)
T TIGR02319 27 LSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGI 106 (294)
T ss_pred HHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCC
Confidence 45678888999999887766653 34221 111 12223333456877743 777888899999999999998
Q ss_pred eEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCC-CCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHc
Q 026121 111 CVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKL-GSGLVIGVPIPREHAASGRVIESAIQSALREAREK 189 (243)
Q Consensus 111 ~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l-~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~ 189 (243)
-=+-.-...+| ..-|+.-...+-+.+|.++-|++-.+..- +.-+|++.= ++....-++++|++|...++ .
T Consensus 107 agi~IEDq~~p----K~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ART----Da~~~~g~deaI~Ra~aY~e-A 177 (294)
T TIGR02319 107 VGYHLEDQVNP----KRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIART----DARESFGLDEAIRRSREYVA-A 177 (294)
T ss_pred eEEEEECCCCc----cccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEe----cccccCCHHHHHHHHHHHHH-h
Confidence 76666555565 23333334566677787777775554322 334555552 11223357888888776654 3
Q ss_pred CC-----CCccCChHHHHHHHHHhCC
Q 026121 190 NI-----TGNAETPFLLARVNELTGG 210 (243)
Q Consensus 190 gi-----~Gk~vTPflL~~i~elT~G 210 (243)
|- .| -.+|--++++.+...+
T Consensus 178 GAD~ifi~~-~~~~~ei~~~~~~~~~ 202 (294)
T TIGR02319 178 GADCIFLEA-MLDVEEMKRVRDEIDA 202 (294)
T ss_pred CCCEEEecC-CCCHHHHHHHHHhcCC
Confidence 32 34 4567777787777655
No 39
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=56.46 E-value=32 Score=24.08 Aligned_cols=45 Identities=16% Similarity=0.386 Sum_probs=33.3
Q ss_pred CeEEEecccccccc-hhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCC
Q 026121 84 PVAVVSAGIKSILD-IPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDS 138 (243)
Q Consensus 84 pV~VVcaG~KsILD-i~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~ 138 (243)
-|+||+.|.+..-. ..+-++.|+..|++|..+.+ |...+.+-+++
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~----------Se~~is~~v~~ 48 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTAD----------SHTTISCLVSE 48 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEc----------CccEEEEEEcH
Confidence 37788888877766 45889999999999986653 55556555554
No 40
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=56.27 E-value=21 Score=32.92 Aligned_cols=112 Identities=14% Similarity=0.119 Sum_probs=68.1
Q ss_pred chhhh-cCCCeEEE------eccc-ccccchhhhHhHhhhCCeeEEeeccCCCc---ceeecC-------CCcccCccCC
Q 026121 76 DLTEL-GRTPVAVV------SAGI-KSILDIPRTLEYLETHGVCVAAYKTNEFP---AFFTET-------SGSKVPCRVD 137 (243)
Q Consensus 76 DL~eL-~rtpV~VV------caG~-KsILDi~~TLE~LET~GV~V~gy~td~fP---aFy~~~-------Sg~~~~~r~d 137 (243)
+|.++ ..-+|+++ |-+| ..|.++..-.+-++.+|+-|+|...|. | ..|... -+++.|.-.|
T Consensus 91 sLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds-~~~h~aw~~~~~~~~g~~~l~fPlLsD 169 (261)
T PTZ00137 91 NSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS-PFSHKAWKELDVRQGGVSPLKFPLFSD 169 (261)
T ss_pred eHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC-HHHHHHHHhhhhhhccccCcceEEEEc
Confidence 55666 44466666 3333 346677777788889999999999876 3 233321 3566666666
Q ss_pred CHHHHHHHHHHHHhcC--CCCeEEE----------EeCCCcCCCCChHHHHHHHHHHHHHHHHcCC
Q 026121 138 SPEDCARLIDVNMKLK--LGSGLVI----------GVPIPREHAASGRVIESAIQSALREAREKNI 191 (243)
Q Consensus 138 ~~~e~A~~~~~~~~l~--l~~g~lv----------anPiP~e~~~~~~~i~~~I~~Al~ea~~~gi 191 (243)
.-.++|+.+-.....| +++..|| .+|.|... +-+++-++|+ |++..++.|.
T Consensus 170 ~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr--~v~eiLr~l~-alq~~~~~g~ 232 (261)
T PTZ00137 170 ISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGR--SVDETLRLFD-AVQFAEKTGN 232 (261)
T ss_pred CChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCC--CHHHHHHHHH-HhchhhhcCC
Confidence 5566666554322122 3444444 25666653 6667777666 8888777753
No 41
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=56.22 E-value=14 Score=31.63 Aligned_cols=63 Identities=24% Similarity=0.295 Sum_probs=44.3
Q ss_pred CCcEEEecccccccCCCccccc-cccchhhhcCCCeEEEe-cccccccchhhhHhHhhhCCeeEEee
Q 026121 51 GIPVFVTGGIGGVHRHGEHTMD-ISSDLTELGRTPVAVVS-AGIKSILDIPRTLEYLETHGVCVAAY 115 (243)
Q Consensus 51 GI~VFaTGGIGGVHrgae~t~D-iSaDL~eL~rtpV~VVc-aG~KsILDi~~TLE~LET~GV~V~gy 115 (243)
+=.+..-=|.||.+.+.. .+ ..+|+..--+.||++|+ .+..+|-+.-.++++|+..|+++.|+
T Consensus 103 ~~D~viIEg~gg~~~~~~--~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~~i~~l~~~~~~i~gv 167 (222)
T PRK00090 103 QYDLVLVEGAGGLLVPLT--EDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEAIRARGLPLAGW 167 (222)
T ss_pred hCCEEEEECCCceeccCC--CCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEE
Confidence 345555555667765533 33 46788877788987665 45556667788999999999998886
No 42
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=56.21 E-value=17 Score=36.03 Aligned_cols=134 Identities=22% Similarity=0.293 Sum_probs=73.2
Q ss_pred EEEecccccccchhhhHhHhhhCCee---EEeecc---CCCcceeecCCCcccCccCCCHHHHHHHHHHHHhc--CCCCe
Q 026121 86 AVVSAGIKSILDIPRTLEYLETHGVC---VAAYKT---NEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKL--KLGSG 157 (243)
Q Consensus 86 ~VVcaG~KsILDi~~TLE~LET~GV~---V~gy~t---d~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l--~l~~g 157 (243)
+|+|-|..+==++++|+|+|++.|.. ++.|-. ..|-.++.+ --+++++..+-...+++ .++|=
T Consensus 181 iVl~PGvNdge~L~kT~~dL~~~g~~~~~~~~~~pvGlt~~n~~~i~---------~~t~~~l~~~k~i~re~~~E~~~~ 251 (414)
T COG1625 181 IVLCPGVNDGEELEKTLEDLEEWGAHEVILMRVVPVGLTRYNRPGIR---------PPTPHELEEFKEIVREFDRELGSI 251 (414)
T ss_pred EEEcCCcCcHHHHHHHHHHHHHhCcCceeEEEeecceeeecCCCCCC---------CCCHHHHHHHHHHHHHHHHhcCce
Confidence 68999999999999999999998754 332211 112222221 22344444444333333 23443
Q ss_pred EEEEeCCCcCCC-CChHHHH---HHHHHHHHH--HHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHH
Q 026121 158 LVIGVPIPREHA-ASGRVIE---SAIQSALRE--AREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKIS 231 (243)
Q Consensus 158 ~lvanPiP~e~~-~~~~~i~---~~I~~Al~e--a~~~gi~Gk~vTPflL~~i~elT~G~Sl~aNiaLv~nNA~laa~IA 231 (243)
.|...|+|.+.. -+-..++ .-|.+.|.+ -+.--++|+=-.|++..-+..+- ++ -|...++||.-.|..|.
T Consensus 252 ~V~g~Pl~~~~~~e~f~~~~~~v~~i~~~L~~~~~~a~iltg~ia~p~~~~~~~~~e--~~--~~v~vv~~~k~~g~~i~ 327 (414)
T COG1625 252 RVTGTPLPDALLGEPFPQLEDGVGEIREFLPEVDFEATILTGEIAAPRIRTIVRGLE--KA--EEVNVVKNEKDGGLLIT 327 (414)
T ss_pred EEeCCCCCchhhcCcchhhhccchhhhhhcccccccccccccccccceeeehhhhcc--cc--ceeeeeeehhhcceeee
Confidence 444556776533 1222222 234455553 33445688888888775554411 11 26666777766665554
Q ss_pred H
Q 026121 232 V 232 (243)
Q Consensus 232 ~ 232 (243)
.
T Consensus 328 ~ 328 (414)
T COG1625 328 A 328 (414)
T ss_pred h
Confidence 3
No 43
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=56.00 E-value=24 Score=29.47 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEec
Q 026121 1 MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTG 58 (243)
Q Consensus 1 vGLs~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTG 58 (243)
+|.+...++.|..-..+.+|+++.-+...... ......+.+-..+|+..||+|.|+|
T Consensus 153 ~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 153 FGTGYSSLSYLKRLPVDYLKIDRSFVRDIETD-PEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred CCCcHhhHHHHHhCCCCEEEECHHHHHhHhcC-hhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 36677788888765567899998777544433 4556778888999999999999986
No 44
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=54.98 E-value=1.6e+02 Score=26.31 Aligned_cols=164 Identities=17% Similarity=0.150 Sum_probs=83.8
Q ss_pred CCHHHHHHHHhcCCCccc----ccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchh
Q 026121 3 LSTEELERLAKLGSKAQK----TARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLT 78 (243)
Q Consensus 3 Ls~~ele~la~~~~~~~K----~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~ 78 (243)
+++|+++.|.+.+-+..- .+.+-+.. +.++.+-...+ -++..++.+||+|. ++.|=|. | +
T Consensus 121 ~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~-i~~~~s~~~~~-~ai~~l~~~Gi~v~-~~~i~Gl--~-e---------- 184 (296)
T TIGR00433 121 LDPEQAKRLKDAGLDYYNHNLDTSQEFYSN-IISTHTYDDRV-DTLENAKKAGLKVC-SGGIFGL--G-E---------- 184 (296)
T ss_pred CCHHHHHHHHHcCCCEEEEcccCCHHHHhh-ccCCCCHHHHH-HHHHHHHHcCCEEE-EeEEEeC--C-C----------
Confidence 477888888665422222 22111111 11222222223 45667788899854 3344443 2 1
Q ss_pred hhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeec--CCCcccCccCCCHHHHHHHHHHHHhcCCCC
Q 026121 79 ELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTE--TSGSKVPCRVDSPEDCARLIDVNMKLKLGS 156 (243)
Q Consensus 79 eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~--~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~ 156 (243)
+.=|+..++++|...|+..+.+. +|.+ .+.+.- +..-++++..+++..-+.+ +|.
T Consensus 185 ---------------t~~d~~~~~~~l~~l~~~~i~l~------~l~p~~gT~l~~-~~~~s~~~~~~~ia~~r~~-lp~ 241 (296)
T TIGR00433 185 ---------------TVEDRIGLALALANLPPESVPIN------FLVKIKGTPLAD-NKELSADDALKTIALARII-MPK 241 (296)
T ss_pred ---------------CHHHHHHHHHHHHhCCCCEEEee------eeEEcCCCccCC-CCCCCHHHHHHHHHHHHHH-CCc
Confidence 22455677788887777655543 1222 222221 2233678888888766554 454
Q ss_pred e-EEEEeCCCcCCCCChHHHHHHHHH-HHHHHHHcCCCCccCChHHHHHHHHHhCCccHH-HHHHHHHH
Q 026121 157 G-LVIGVPIPREHAASGRVIESAIQS-ALREAREKNITGNAETPFLLARVNELTGGLSLA-SNIALVKN 222 (243)
Q Consensus 157 g-~lvanPiP~e~~~~~~~i~~~I~~-Al~ea~~~gi~Gk~vTPflL~~i~elT~G~Sl~-aNiaLv~n 222 (243)
. +-+.---| ..+.....+ |+...-..=+.|..+| |+|++.. .++.++++
T Consensus 242 ~~i~~~~~~~-------~~~~~~~~~~~l~~G~n~i~~g~~~~----------~~g~~~~~~~~~~~~~ 293 (296)
T TIGR00433 242 AEIRLAGGRE-------VNMRELQQAMCFMAGANSIFVGDYLT----------TTGNPEEDKDKKLLAK 293 (296)
T ss_pred ceEEEeCCcc-------hhhhhhHHHHHHHhcCceEEEcCccc----------CCCCCCcHHHHHHHHH
Confidence 4 32222211 122222233 4443222223588777 8999998 99988875
No 45
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=54.92 E-value=74 Score=27.86 Aligned_cols=92 Identities=10% Similarity=0.077 Sum_probs=53.3
Q ss_pred chhhhHhHhhhCCeeEEeeccCCCcceeec-CCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCCCCh---
Q 026121 97 DIPRTLEYLETHGVCVAAYKTNEFPAFFTE-TSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASG--- 172 (243)
Q Consensus 97 Di~~TLE~LET~GV~V~gy~td~fPaFy~~-~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~--- 172 (243)
++..--+.++.+|+.|.++.+..- .|+.. .++- -..|-+..+.+.+.++.-..||.+ .++..|......-+.
T Consensus 48 ~~~~l~~~~~~~gl~v~s~~~~~~-~~~~~~~~~~-~~~r~~~~~~~~~~i~~a~~lGa~--~i~~~~~~~~~~~~~~~~ 123 (275)
T PRK09856 48 GIKQIKALAQTYQMPIIGYTPETN-GYPYNMMLGD-EHMRRESLDMIKLAMDMAKEMNAG--YTLISAAHAGYLTPPNVI 123 (275)
T ss_pred HHHHHHHHHHHcCCeEEEecCccc-CcCccccCCC-HHHHHHHHHHHHHHHHHHHHhCCC--EEEEcCCCCCCCCCHHHH
Confidence 456667799999999999875221 11110 1110 112334456777778888888754 455555432222222
Q ss_pred -HHHHHHHHHHHHHHHHcCCC
Q 026121 173 -RVIESAIQSALREAREKNIT 192 (243)
Q Consensus 173 -~~i~~~I~~Al~ea~~~gi~ 192 (243)
+.+-+.+++....|++.||+
T Consensus 124 ~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 124 WGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred HHHHHHHHHHHHHHHHHcCCE
Confidence 34445677778888999984
No 46
>cd00659 Topo_IB_C DNA topoisomerase IB, C-terminal catalytic domain. Topoisomerase I promotes the relaxation of both positive and negative DNA superhelical tension by introducing a transient single-stranded break in duplex DNA. This function is vital for the processes of replication, transcription, and recombination. Unlike Topo IA enzymes, Topo IB enzymes do not require a single-stranded region of DNA or metal ions for their function. The type IB family of DNA topoisomerases includes eukaryotic nuclear topoisomerase I, topoisomerases of poxviruses and bacterial versions of Topo IB. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their C-terminal catalytic domain and the overall reaction mechanism with tyrosine recombinases. The C-terminal catalytic domain in topoisomerases is linked to a divergent N-terminal domain that shows no sequence or structure similarity to the N-terminal domains of tyrosine recombinases.
Probab=54.63 E-value=1e+02 Score=27.71 Aligned_cols=68 Identities=7% Similarity=0.098 Sum_probs=55.9
Q ss_pred eecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChH
Q 026121 124 FTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPF 199 (243)
Q Consensus 124 y~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPf 199 (243)
|.-+||..-..++++...++++++.-.. .+|+--||..+ ..+.++...++++|.+.. .+++=|++.=|
T Consensus 90 F~GK~g~~~~~~v~d~~~l~~~l~~~~~-k~pg~~LF~y~--~~~~v~s~~vN~yl~e~~-----~~~TaKdFRTw 157 (218)
T cd00659 90 FLGKDSIRYENEVEVEPRLFKNLRKFLD-KLPGDDLFQYL--QVDRLNSSKLNAYLREFM-----EGLTAKVFRTY 157 (218)
T ss_pred EECCCCcEEEEEECChHHHHHHHHHHHH-cCCcHHhhccC--CCCcCCHHHHHHHHHHHh-----CCCChhhcccc
Confidence 4568899999999996788999987766 45777788877 667899999999888875 58999999888
No 47
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=54.38 E-value=27 Score=34.50 Aligned_cols=58 Identities=28% Similarity=0.424 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHhcCCCccccc-----ccchHHHHhcCCCchhhHHHHH-----------HHHHHCCCcEE-Eecccc
Q 026121 2 RLSTEELERLAKLGSKAQKTA-----RRDIAHVVATRGNGATTVSATM-----------FFASMVGIPVF-VTGGIG 61 (243)
Q Consensus 2 GLs~~ele~la~~~~~~~K~S-----rRDl~~~~a~~~~GaTTVaaTm-----------~lA~~aGI~VF-aTGGIG 61 (243)
|+|.+|+..+-.......-+| .|||..+..++ ++ .--|=-| .+|.+-|++.+ .|||||
T Consensus 256 ~~s~~~i~~~LNkkSGllGlSg~ssD~R~l~~~~~~g-~~-A~lA~~~f~~Ri~kyIg~y~a~L~glDaiVFTaGIG 330 (396)
T COG0282 256 GMSAEEIDTLLNKKSGLLGLSGLSSDMRDLEEAAAEG-NE-AKLALDMFVYRIAKYIGSYAAALGGLDALVFTAGIG 330 (396)
T ss_pred CCCHHHHHHHHhhhccccccccccchHHHHHHHhccC-ch-HHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCccc
Confidence 789999999876544555444 68999999988 65 3333333 45777788854 499998
No 48
>PRK15108 biotin synthase; Provisional
Probab=54.10 E-value=1.1e+02 Score=28.83 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=49.3
Q ss_pred HHHHHHCCCcEEEecccccccCCCccccccccchhhhcC-CCe-EEEecccccccchhhhHhHhhhCCeeEEeeccCCCc
Q 026121 44 MFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGR-TPV-AVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFP 121 (243)
Q Consensus 44 m~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~r-tpV-~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fP 121 (243)
+..+...||+=| ++|.||-|. ....+|.=.|+.+.-+ ..+ ..+|.| .|+ ...++.|...||--+...-+.-|
T Consensus 85 a~~~~~~G~~~i-~i~~~g~~p-~~~~~e~i~~~i~~ik~~~i~v~~s~G---~ls-~e~l~~LkeAGld~~n~~leT~p 158 (345)
T PRK15108 85 ARKAKAAGSTRF-CMGAAWKNP-HERDMPYLEQMVQGVKAMGLETCMTLG---TLS-ESQAQRLANAGLDYYNHNLDTSP 158 (345)
T ss_pred HHHHHHcCCCEE-EEEecCCCC-CcchHHHHHHHHHHHHhCCCEEEEeCC---cCC-HHHHHHHHHcCCCEEeeccccCh
Confidence 334456799988 666666332 1234554445544332 333 235556 567 99999999999998888744469
Q ss_pred ceeecC
Q 026121 122 AFFTET 127 (243)
Q Consensus 122 aFy~~~ 127 (243)
.||-+-
T Consensus 159 ~~f~~I 164 (345)
T PRK15108 159 EFYGNI 164 (345)
T ss_pred HhcCCC
Confidence 999643
No 49
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=53.22 E-value=95 Score=25.08 Aligned_cols=91 Identities=16% Similarity=0.096 Sum_probs=51.6
Q ss_pred hhhhHhHhhhCCeeEEeeccCCCcceeecCCCc-ccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCC----CcCC--CC
Q 026121 98 IPRTLEYLETHGVCVAAYKTNEFPAFFTETSGS-KVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPI----PREH--AA 170 (243)
Q Consensus 98 i~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~-~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPi----P~e~--~~ 170 (243)
+..-.++|+..|+.|.++....+........+- .-+ |-...+.+-+.++.-..||.+. ++..|- +.+. +-
T Consensus 29 ~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~--i~~~~g~~~~~~~~~~~~ 105 (213)
T PF01261_consen 29 AEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKY--IVVHSGRYPSGPEDDTEE 105 (213)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSE--EEEECTTESSSTTSSHHH
T ss_pred HHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCc--eeecCcccccccCCCHHH
Confidence 455667899999999988722211111100000 001 3334677778888888887443 444433 2221 12
Q ss_pred ChHHHHHHHHHHHHHHHHcCC
Q 026121 171 SGRVIESAIQSALREAREKNI 191 (243)
Q Consensus 171 ~~~~i~~~I~~Al~ea~~~gi 191 (243)
..+.+-+.+++....|++.|+
T Consensus 106 ~~~~~~~~l~~l~~~a~~~gv 126 (213)
T PF01261_consen 106 NWERLAENLRELAEIAEEYGV 126 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhhhhhhcc
Confidence 344555667788888888898
No 50
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=53.14 E-value=1e+02 Score=26.20 Aligned_cols=87 Identities=17% Similarity=0.234 Sum_probs=46.8
Q ss_pred HCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCC
Q 026121 49 MVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETS 128 (243)
Q Consensus 49 ~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~S 128 (243)
+.|=+|++|||-||+-+ -+...|.+.+- .|++++-... .+....+.++..|..+..+
T Consensus 8 ~~~k~vlItGa~g~iG~------~ia~~l~~~G~-~V~~~~r~~~---~~~~~~~~i~~~~~~~~~~------------- 64 (255)
T PRK07523 8 LTGRRALVTGSSQGIGY------ALAEGLAQAGA-EVILNGRDPA---KLAAAAESLKGQGLSAHAL------------- 64 (255)
T ss_pred CCCCEEEEECCcchHHH------HHHHHHHHcCC-EEEEEeCCHH---HHHHHHHHHHhcCceEEEE-------------
Confidence 45668999999999844 45666666553 3444433222 2233444455444333222
Q ss_pred CcccCccCCCHHHHHHHHHHH-HhcCCCCeEEEEeC
Q 026121 129 GSKVPCRVDSPEDCARLIDVN-MKLKLGSGLVIGVP 163 (243)
Q Consensus 129 g~~~~~r~d~~~e~A~~~~~~-~~l~l~~g~lvanP 163 (243)
+..+.+++++.+++..- .+++-... ||-|+
T Consensus 65 ----~~D~~~~~~~~~~~~~~~~~~~~~d~-li~~a 95 (255)
T PRK07523 65 ----AFDVTDHDAVRAAIDAFEAEIGPIDI-LVNNA 95 (255)
T ss_pred ----EccCCCHHHHHHHHHHHHHhcCCCCE-EEECC
Confidence 23466777887777643 33443333 44443
No 51
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=53.00 E-value=24 Score=35.09 Aligned_cols=54 Identities=28% Similarity=0.386 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHhcCCCccc--------ccccchHHHHhcCCCchhhHHHHHHHH---HHCCCcEEEecccc
Q 026121 2 RLSTEELERLAKLGSKAQK--------TARRDIAHVVATRGNGATTVSATMFFA---SMVGIPVFVTGGIG 61 (243)
Q Consensus 2 GLs~~ele~la~~~~~~~K--------~SrRDl~~~~a~~~~GaTTVaaTm~lA---~~aGI~VFaTGGIG 61 (243)
+.|.++.+.|.+.+-+.+| |.+|.+ -..|-.|+.+-+.++ +..|++|+|.|||-
T Consensus 274 ~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~------~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~ 338 (475)
T TIGR01303 274 VVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMM------TGVGRPQFSAVLECAAEARKLGGHVWADGGVR 338 (475)
T ss_pred cCCHHHHHHHHHhCCCEEEECCcCCccccCccc------cCCCCchHHHHHHHHHHHHHcCCcEEEeCCCC
Confidence 4788899999887778888 777732 223556777766664 56699999999885
No 52
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=52.56 E-value=2e+02 Score=27.06 Aligned_cols=157 Identities=15% Similarity=0.137 Sum_probs=92.9
Q ss_pred HHHHHHHHCCCcEEEeccccc--ccCCCcc----cccc----ccchhhhcCCCeEEEe-cccccccchhhhHhHhhhCCe
Q 026121 42 ATMFFASMVGIPVFVTGGIGG--VHRHGEH----TMDI----SSDLTELGRTPVAVVS-AGIKSILDIPRTLEYLETHGV 110 (243)
Q Consensus 42 aTm~lA~~aGI~VFaTGGIGG--VHrgae~----t~Di----SaDL~eL~rtpV~VVc-aG~KsILDi~~TLE~LET~GV 110 (243)
.+..++..+|.+...|.|-|= -..|-.. +||. -.++..-...||+|=+ +|-=+.+++.+|.+.||..||
T Consensus 28 ~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGa 107 (292)
T PRK11320 28 YHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGA 107 (292)
T ss_pred HHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCC
Confidence 446788899999998887542 2335322 2211 1222333445876643 564599999999999999998
Q ss_pred eEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCC-CCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHH-
Q 026121 111 CVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKL-GSGLVIGVPIPREHAASGRVIESAIQSALREARE- 188 (243)
Q Consensus 111 ~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l-~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~- 188 (243)
-=+-.-...||- .-|+.-...+-+++|.++-|++-.+-.- +.-+|+|.= ++.....++++|++|.+.++.
T Consensus 108 agi~IEDq~~pK----~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART----Da~~~~g~deAI~Ra~aY~eAG 179 (292)
T PRK11320 108 AAVHIEDQVGAK----RCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMART----DALAVEGLDAAIERAQAYVEAG 179 (292)
T ss_pred eEEEEecCCCcc----ccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEec----CcccccCHHHHHHHHHHHHHcC
Confidence 766665555662 2244444567788888888876555432 334555542 122223478889888776652
Q ss_pred -cC--CCCccCChHHHHHHHHH
Q 026121 189 -KN--ITGNAETPFLLARVNEL 207 (243)
Q Consensus 189 -~g--i~Gk~vTPflL~~i~el 207 (243)
.+ |.|. .++--++++.+.
T Consensus 180 AD~ifi~~~-~~~~~i~~~~~~ 200 (292)
T PRK11320 180 ADMIFPEAM-TELEMYRRFADA 200 (292)
T ss_pred CCEEEecCC-CCHHHHHHHHHh
Confidence 11 1332 245555555543
No 53
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=52.31 E-value=60 Score=31.10 Aligned_cols=27 Identities=22% Similarity=0.130 Sum_probs=21.9
Q ss_pred CCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCCC
Q 026121 153 KLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNIT 192 (243)
Q Consensus 153 ~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~ 192 (243)
++|.-++|.+|.-+ .+|++||...||-
T Consensus 151 ~~Pd~viv~d~~~e-------------~~AI~EA~kl~IP 177 (326)
T PRK12311 151 GLPDLLFVIDTNKE-------------DIAIQEAQRLGIP 177 (326)
T ss_pred cCCCEEEEeCCccc-------------hHHHHHHHHcCCC
Confidence 37999999998643 4599999999983
No 54
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=50.26 E-value=13 Score=32.05 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=41.8
Q ss_pred cccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEee
Q 026121 60 IGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAY 115 (243)
Q Consensus 60 IGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy 115 (243)
|+|++..--.+.+.-+++..=++-|+++|-.|+++==....-.|+.|..|+||+.=
T Consensus 6 ~~g~~~a~~~~p~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT 61 (162)
T TIGR00315 6 ISGPKHATLVSPKLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVAT 61 (162)
T ss_pred cCCcccccccCHHHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEc
Confidence 45666544446677777888899999999999975444566778888999999853
No 55
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=50.22 E-value=24 Score=31.40 Aligned_cols=76 Identities=22% Similarity=0.220 Sum_probs=49.2
Q ss_pred ccccchhhhHhHhhhC----------CeeEEeecc----------CCCcceeecCCCcccCccCCCHHHHHHHHHHHHhc
Q 026121 93 KSILDIPRTLEYLETH----------GVCVAAYKT----------NEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKL 152 (243)
Q Consensus 93 KsILDi~~TLE~LET~----------GV~V~gy~t----------d~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l 152 (243)
-.|+|+.+|+++|+.. .|.++|=+. ..+-+||... --+|..+.+..+ ..+
T Consensus 37 i~IIdL~kT~~~L~~A~~~i~~i~~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~--RWlgGtLTN~~~--------~~~ 106 (196)
T TIGR01012 37 LYVLDLRKTDERLRVAAKFLVRIEPEDILVVSARIYGQKPVLKFAKVTGARAIAG--RFTPGTFTNPMQ--------KAF 106 (196)
T ss_pred CEEEcHHHHHHHHHHHHHHHHHhhCCeEEEEecCHHHHHHHHHHHHHhCCceECC--eeCCCCCCCccc--------ccc
Confidence 3799999999999764 355665542 1233444322 245555555432 236
Q ss_pred CCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCC
Q 026121 153 KLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNI 191 (243)
Q Consensus 153 ~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~gi 191 (243)
.+|.-++|.+|.-+ .+|++||...||
T Consensus 107 ~~Pdlliv~dp~~~-------------~~Av~EA~~l~I 132 (196)
T TIGR01012 107 REPEVVVVTDPRAD-------------HQALKEASEVGI 132 (196)
T ss_pred CCCCEEEEECCccc-------------cHHHHHHHHcCC
Confidence 78999999887433 258999999988
No 56
>PLN02641 anthranilate phosphoribosyltransferase
Probab=49.46 E-value=41 Score=32.19 Aligned_cols=107 Identities=25% Similarity=0.285 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHhcC-CCcccccc-cchHHHHhcCCCchhh--HH-HHHHHHHHCCCcEEEecccccccCCCccccccccc
Q 026121 2 RLSTEELERLAKLG-SKAQKTAR-RDIAHVVATRGNGATT--VS-ATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSD 76 (243)
Q Consensus 2 GLs~~ele~la~~~-~~~~K~Sr-RDl~~~~a~~~~GaTT--Va-aTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaD 76 (243)
|.|.+||.-+++.- +...++.. .+.-..+..|.+|.-| +| ...+++..+|+||+-.|.=+=-++ ==|+|
T Consensus 49 get~eEiag~~~a~~~~~~~~~~~~~~~D~~gtGGdg~~t~nist~aa~v~A~~G~~V~kHGnr~~ss~------~GsaD 122 (343)
T PLN02641 49 GETFEEIAGLARAMIKRARKVDGLVDAVDIVGTGGDGANTVNISTGSSILAAACGAKVAKQGNRSSSSA------CGSAD 122 (343)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCCCCceeCCCCCCCCccccHHHHHHHHHhCCCeEEEeCCCCCCCc------cCHHH
Confidence 67888888887521 12222321 1122234555555433 21 235677779999999987332221 12566
Q ss_pred hhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCccee
Q 026121 77 LTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFF 124 (243)
Q Consensus 77 L~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy 124 (243)
+-| +-|++-=++....-+.||..|..-+ |....+|++.
T Consensus 123 vLe---------aLGi~~~~~~~~~~~~l~~~g~~fl-~a~~~hPa~~ 160 (343)
T PLN02641 123 VLE---------ALGVAIDLGPEGVKRCVEEVGIGFM-MAPKYHPAMK 160 (343)
T ss_pred HHH---------HcCCCCCCCHHHHHHHHHhcCcEEE-echhhCHHHH
Confidence 555 3455556777788888999998766 5566667663
No 57
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=49.32 E-value=67 Score=28.83 Aligned_cols=77 Identities=19% Similarity=0.154 Sum_probs=48.7
Q ss_pred ccccchhhhHhHhhhC----------CeeEEeeccC----------CCcceeecCCCcccCccCCCHHHHHHHHHHHHhc
Q 026121 93 KSILDIPRTLEYLETH----------GVCVAAYKTN----------EFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKL 152 (243)
Q Consensus 93 KsILDi~~TLE~LET~----------GV~V~gy~td----------~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l 152 (243)
..|+|+.+|+++|... .|.++|=+.. ..-.||... -.+|..+.+... ...
T Consensus 43 i~IIdL~kT~~~L~~A~~~i~~~~~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~--RWlgG~LTN~~~--------~~~ 112 (204)
T PRK04020 43 LYVLDVRKTDERIRIAAKFLSRYEPEKILVVSSRQYGQKPVQKFAEVVGAKAITG--RFIPGTLTNPSL--------KGY 112 (204)
T ss_pred CEEEcHHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHhCCeeecC--ccCCCcCcCcch--------hcc
Confidence 3799999999999753 3555544321 233455433 235555554431 123
Q ss_pred CCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCCC
Q 026121 153 KLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNIT 192 (243)
Q Consensus 153 ~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~ 192 (243)
-+|.-++|.+|.-+ .+|++||...||-
T Consensus 113 ~~Pdliiv~dp~~~-------------~~AI~EA~kl~IP 139 (204)
T PRK04020 113 IEPDVVVVTDPRGD-------------AQAVKEAIEVGIP 139 (204)
T ss_pred CCCCEEEEECCccc-------------HHHHHHHHHhCCC
Confidence 48999999998443 4699999999883
No 58
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=48.89 E-value=1.2e+02 Score=28.98 Aligned_cols=96 Identities=18% Similarity=0.159 Sum_probs=47.3
Q ss_pred eEEEecccccccchhhhHhHhhhCCeeEEeecc-------C--CCcceeecCCCcccC-c---cCCCHHHHHHHHHHHHh
Q 026121 85 VAVVSAGIKSILDIPRTLEYLETHGVCVAAYKT-------N--EFPAFFTETSGSKVP-C---RVDSPEDCARLIDVNMK 151 (243)
Q Consensus 85 V~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t-------d--~fPaFy~~~Sg~~~~-~---r~d~~~e~A~~~~~~~~ 151 (243)
+-+|..|.-...+-+...+.+|..|+|++|-.. | .+=. +.++-|++.| + .+++.+++.+... .
T Consensus 75 id~I~p~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~-~l~~~gIp~pp~~~~~v~~~~~~~~~~~---~ 150 (451)
T PRK08591 75 ADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKA-TMKKAGVPVVPGSDGPVDDEEEALAIAK---E 150 (451)
T ss_pred CCEEEECCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHH-HHHHcCCCCCCCcccccCCHHHHHHHHH---H
Confidence 444444443333444556677777777776321 1 1111 2234566663 3 4567776555433 2
Q ss_pred cCCCCeEEEEeCCCcCC------CCChHHHHHHHHHHHHHHH
Q 026121 152 LKLGSGLVIGVPIPREH------AASGRVIESAIQSALREAR 187 (243)
Q Consensus 152 l~l~~g~lvanPiP~e~------~~~~~~i~~~I~~Al~ea~ 187 (243)
++.| +|.-|.-... --+.+++..+++++..++.
T Consensus 151 ~g~P---vvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~ 189 (451)
T PRK08591 151 IGYP---VIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAK 189 (451)
T ss_pred cCCC---EEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHH
Confidence 3332 3333432211 1256677777777665543
No 59
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=47.74 E-value=20 Score=35.75 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=50.8
Q ss_pred CCcEEEecccccccCCCccccc--cccchhhhcCCCeEEEecccc----ccc-chhhhHhHhhhCCeeEEeeccCCCc
Q 026121 51 GIPVFVTGGIGGVHRHGEHTMD--ISSDLTELGRTPVAVVSAGIK----SIL-DIPRTLEYLETHGVCVAAYKTNEFP 121 (243)
Q Consensus 51 GI~VFaTGGIGGVHrgae~t~D--iSaDL~eL~rtpV~VVcaG~K----sIL-Di~~TLE~LET~GV~V~gy~td~fP 121 (243)
+-++.+-=|.||.+-|.-..-| -++||..+-..||++|.-.-. +.+ -+-.+.+||+..++++.|+==+.++
T Consensus 317 ~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~~PVILV~~~~~g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~ 394 (476)
T PRK06278 317 DYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALGFPVYIVSSCSKSGIEGAFVESMAYYSLLKKMGVKVEGIILNKVY 394 (476)
T ss_pred CCCEEEEECCCCcccccCCCCccccHHHHHHHhCCCEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCC
Confidence 5578888899999988322223 457999999999999875432 233 3455789999999999998544443
No 60
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=47.04 E-value=1.4e+02 Score=29.13 Aligned_cols=67 Identities=18% Similarity=0.222 Sum_probs=43.2
Q ss_pred CCcEEEecccccccCCCcc--ccccccchhhhcCCCeEEEecccc-c--ccchhhhHhHhhhCCeeEEeeccC
Q 026121 51 GIPVFVTGGIGGVHRHGEH--TMDISSDLTELGRTPVAVVSAGIK-S--ILDIPRTLEYLETHGVCVAAYKTN 118 (243)
Q Consensus 51 GI~VFaTGGIGGVHrgae~--t~DiSaDL~eL~rtpV~VVcaG~K-s--ILDi~~TLE~LET~GV~V~gy~td 118 (243)
+-.+.+-=|.||.+-|... .....+|+...-..||++|...-. + +-.+-.+++.+ ..++++.|+=-+
T Consensus 81 ~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~~~~~~~a~l~~~~~~~-~~~i~i~GvI~N 152 (451)
T PRK01077 81 GADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDASGMAQSAAALVLGFATF-DPDVRIAGVILN 152 (451)
T ss_pred cCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHh-CCCCCEEEEEEE
Confidence 5677888888998876321 234578999999999999975322 2 22333344443 238888888433
No 61
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=46.73 E-value=20 Score=31.97 Aligned_cols=60 Identities=27% Similarity=0.338 Sum_probs=30.8
Q ss_pred HHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcC---CCeEEEeccc-ccccchhhhHhHhhhCCeeE
Q 026121 42 ATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGR---TPVAVVSAGI-KSILDIPRTLEYLETHGVCV 112 (243)
Q Consensus 42 aTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~r---tpV~VVcaG~-KsILDi~~TLE~LET~GV~V 112 (243)
-.-.+++...|||++.||+... .|+.++-+ ..-+++++=- .-=+++..-+++|+.+|+||
T Consensus 190 ~~~~i~~~~~ipvia~GGi~s~-----------~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 190 LTKAVSEAVKIPVIASGGAGKP-----------EHFYEAFTKGKADAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHhCCCCEEEeCCCCCH-----------HHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 3344556667777777777632 13333222 2222222110 01246666677777777775
No 62
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=46.60 E-value=2.2e+02 Score=28.40 Aligned_cols=168 Identities=18% Similarity=0.163 Sum_probs=89.6
Q ss_pred CHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHC--CCcEEEecccccccCCCccccccccchhhhc
Q 026121 4 STEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMV--GIPVFVTGGIGGVHRHGEHTMDISSDLTELG 81 (243)
Q Consensus 4 s~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~a--GI~VFaTGGIGGVHrgae~t~DiSaDL~eL~ 81 (243)
+.+|+++-.+.+..++-+.-|||. +=-+-...|..|+.+. ++-+.+=+||-. ..|+..|.
T Consensus 168 ~~~El~~al~~~a~iiGiNnRdL~-------t~~vd~~~~~~l~~~ip~~~~~vseSGI~t-----------~~d~~~~~ 229 (454)
T PRK09427 168 NEEELERAIALGAKVIGINNRNLR-------DLSIDLNRTRELAPLIPADVIVISESGIYT-----------HAQVRELS 229 (454)
T ss_pred CHHHHHHHHhCCCCEEEEeCCCCc-------cceECHHHHHHHHhhCCCCcEEEEeCCCCC-----------HHHHHHHH
Confidence 456777655555567777888864 2234466777777776 444455555542 23444442
Q ss_pred C-CCeEEEecccccccchhhhHhHhhhCCeeEEeecc-----------CCCccee-ecCCCcccCccCCCHHHHHHHHHH
Q 026121 82 R-TPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKT-----------NEFPAFF-TETSGSKVPCRVDSPEDCARLIDV 148 (243)
Q Consensus 82 r-tpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t-----------d~fPaFy-~~~Sg~~~~~r~d~~~e~A~~~~~ 148 (243)
. ..-++|-...-.=-|+++++.-|-+--|.++|..+ -+|-+|- .+.|.-.+ +++++.++...
T Consensus 230 ~~~davLiG~~lm~~~d~~~~~~~L~~~~vKICGit~~eda~~a~~~GaD~lGfIf~~~SpR~V-----~~~~a~~i~~~ 304 (454)
T PRK09427 230 PFANGFLIGSSLMAEDDLELAVRKLILGENKVCGLTRPQDAKAAYDAGAVYGGLIFVEKSPRYV-----SLEQAQEIIAA 304 (454)
T ss_pred hcCCEEEECHHHcCCCCHHHHHHHHhccccccCCCCCHHHHHHHHhCCCCEEeeEeCCCCCCCC-----CHHHHHHHHHh
Confidence 2 23334443333334777777777665677777764 3777773 35554333 57777777654
Q ss_pred HHhcCCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHH
Q 026121 149 NMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNEL 207 (243)
Q Consensus 149 ~~~l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPflL~~i~el 207 (243)
+....=-||.||- .++|.+++++.-- +--.++|.+ +|-.++++.+.
T Consensus 305 ---l~v~~VgVfv~~~-------~~~i~~i~~~~~l--D~vQLHG~e-~~~~~~~l~~~ 350 (454)
T PRK09427 305 ---APLRYVGVFRNAD-------IEDIVDIAKQLSL--AAVQLHGDE-DQAYIDALREA 350 (454)
T ss_pred ---CCCCEEEEEeCCC-------HHHHHHHHHHcCC--CEEEeCCCC-CHHHHHHHHhh
Confidence 2333333555553 4444443332210 011235754 45556666543
No 63
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=46.59 E-value=25 Score=35.21 Aligned_cols=70 Identities=27% Similarity=0.377 Sum_probs=39.4
Q ss_pred eEEEecccccccchhhhH-hHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHH-HHhcCCCCeEEEEe
Q 026121 85 VAVVSAGIKSILDIPRTL-EYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDV-NMKLKLGSGLVIGV 162 (243)
Q Consensus 85 V~VVcaG~KsILDi~~TL-E~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~-~~~l~l~~g~lvan 162 (243)
++|.-||---==||.+-+ |.|..+||||||..+=. =||+.+++-.+ ..+.+++|+. .++.+-..-+||.-
T Consensus 262 ~av~~SGDGGWr~lDk~v~~~l~~~gvpVvGvdsLR--YfW~~rtPe~~------a~Dl~r~i~~y~~~w~~~~~~liGy 333 (456)
T COG3946 262 VAVFYSGDGGWRDLDKEVAEALQKQGVPVVGVDSLR--YFWSERTPEQI------AADLSRLIRFYARRWGAKRVLLIGY 333 (456)
T ss_pred EEEEEecCCchhhhhHHHHHHHHHCCCceeeeehhh--hhhccCCHHHH------HHHHHHHHHHHHHhhCcceEEEEee
Confidence 344444444444665554 89999999999997533 37766554332 2233445442 22245556666643
No 64
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=46.45 E-value=47 Score=31.84 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=39.0
Q ss_pred chhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchh-------------hh-cCCCeEEEecccccccchhhh
Q 026121 36 GATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLT-------------EL-GRTPVAVVSAGIKSILDIPRT 101 (243)
Q Consensus 36 GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~-------------eL-~rtpV~VVcaG~KsILDi~~T 101 (243)
||.=.|+-..+.+..|..|+++=.- ...+...+|. .+ ....++|+|.|.+. |-| -
T Consensus 8 gG~gm~~la~~l~~~G~~V~~~D~~--------~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~SpgI~~--~~~-~ 76 (448)
T TIGR01081 8 CGTFMGGLAMIAKQLGHEVTGSDAN--------VYPPMSTQLEAQGIEIIEGFDAAQLEPKPDLVVIGNAMKR--GNP-C 76 (448)
T ss_pred CHHhHHHHHHHHHhCCCEEEEECCC--------CCcHHHHHHHHCCCEEeCCCCHHHCCCCCCEEEECCCCCC--CCH-H
Confidence 6666777778888888888765420 0011111121 11 23678999999973 433 3
Q ss_pred HhHhhhCCeeEEee
Q 026121 102 LEYLETHGVCVAAY 115 (243)
Q Consensus 102 LE~LET~GV~V~gy 115 (243)
+.....+|+||+++
T Consensus 77 ~~~a~~~~i~v~~~ 90 (448)
T TIGR01081 77 VEAVLNLNLPYTSG 90 (448)
T ss_pred HHHHHHCCCCEEeH
Confidence 44445566666554
No 65
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.35 E-value=32 Score=24.30 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=30.1
Q ss_pred eEEEecccccccc-hhhhHhHhhhCCeeEEeeccCCC
Q 026121 85 VAVVSAGIKSILD-IPRTLEYLETHGVCVAAYKTNEF 120 (243)
Q Consensus 85 V~VVcaG~KsILD-i~~TLE~LET~GV~V~gy~td~f 120 (243)
|+||-.|.++.-. +.+.++.|...+|.++.+++.+.
T Consensus 3 VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~~~~s~~ 39 (63)
T cd04920 3 VSLVGRGIRSLLHKLGPALEVFGKKPVHLVSQAANDL 39 (63)
T ss_pred EEEECCCcccCccHHHHHHHHHhcCCceEEEEeCCCC
Confidence 7889999988877 56889999999999999986543
No 66
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=45.72 E-value=95 Score=28.11 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=40.6
Q ss_pred HHHHHHHHCCC-cEEEeccccccc-----CCCcccccccc-chhhhc----CCCeEEEecccccccchhhhHhHhhhCCe
Q 026121 42 ATMFFASMVGI-PVFVTGGIGGVH-----RHGEHTMDISS-DLTELG----RTPVAVVSAGIKSILDIPRTLEYLETHGV 110 (243)
Q Consensus 42 aTm~lA~~aGI-~VFaTGGIGGVH-----rgae~t~DiSa-DL~eL~----rtpV~VVcaG~KsILDi~~TLE~LET~GV 110 (243)
.++.+|+..|. +|+++..----+ .|+...+|... |+.++- .-.+++=|+|.++- +...++.|...|.
T Consensus 184 ~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~--~~~~~~~l~~~G~ 261 (343)
T PRK09880 184 LIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSS--INTCLEVTRAKGV 261 (343)
T ss_pred HHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHHH--HHHHHHHhhcCCE
Confidence 44668888898 588775311000 13444444322 333332 24689999997643 4567888988886
Q ss_pred eE
Q 026121 111 CV 112 (243)
Q Consensus 111 ~V 112 (243)
-|
T Consensus 262 iv 263 (343)
T PRK09880 262 MV 263 (343)
T ss_pred EE
Confidence 54
No 67
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=45.70 E-value=40 Score=28.22 Aligned_cols=45 Identities=33% Similarity=0.481 Sum_probs=31.2
Q ss_pred CCCcCCCCC--hHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCc
Q 026121 163 PIPREHAAS--GRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGL 211 (243)
Q Consensus 163 PiP~e~~~~--~~~i~~~I~~Al~ea~~~gi~Gk~vTPflL~~i~elT~G~ 211 (243)
|.|+.+.-+ --..|++.+.|++. --.|+++-|++|.++.++|.+.
T Consensus 80 ~~P~~f~R~~~t~vaeev~~~a~~~----~~~g~~~~~~~l~~~~~l~~~~ 126 (132)
T PF05944_consen 80 PMPDRFKRTLPTFVAEEVADWALRA----AKAGQSFEPYFLSRVFELTADQ 126 (132)
T ss_pred CccccccCcchHHHHHHHHHHHHHH----HHcCCCCChHHHHHHHHHHccC
Confidence 678877743 33344444444433 3478999999999999999876
No 68
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=45.47 E-value=59 Score=33.29 Aligned_cols=143 Identities=30% Similarity=0.421 Sum_probs=93.1
Q ss_pred HHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCC--ccccccccchhhhcCC----CeEEEecccccccchhhhH
Q 026121 29 VVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHG--EHTMDISSDLTELGRT----PVAVVSAGIKSILDIPRTL 102 (243)
Q Consensus 29 ~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrga--e~t~DiSaDL~eL~rt----pV~VVcaG~KsILDi~~TL 102 (243)
++.....|+|-|-.-|.=|-.-|||..+--| -|-+-+ ..-|- -+|..+++|+ +|. +|++=|||+-+
T Consensus 158 vlvTSGPGATNvvtp~ADAlaDg~PlVvftG--QVptsaIGtDAFQ-EadiVgisRScTKwNvm-----VkdVedlPrrI 229 (675)
T KOG4166|consen 158 VLVTSGPGATNVVTPLADALADGVPLVVFTG--QVPTSAIGTDAFQ-EADIVGISRSCTKWNVM-----VKDVEDLPRRI 229 (675)
T ss_pred EEEecCCCcccccchhhHHhhcCCcEEEEec--ccchhhcccchhc-cCCeeeeeeccceehee-----eecHHHhhHHH
Confidence 3444567999999889888889999776432 222211 01111 2455555553 222 48889999887
Q ss_pred hHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCCCCh----------
Q 026121 103 EYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASG---------- 172 (243)
Q Consensus 103 E~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~---------- 172 (243)
|- ||+-..||-+=|--+|-|+++-+- |+-+|||....++.
T Consensus 230 ~E-----------------AFeiATSGRPGPVLVDlPKDvta~-------------~l~~pip~~~~lPsn~~m~~~~~~ 279 (675)
T KOG4166|consen 230 EE-----------------AFEIATSGRPGPVLVDLPKDVTAQ-------------LLIPPIPQAMRLPSNAYMSRMPKP 279 (675)
T ss_pred HH-----------------HhhhhccCCCCCeEeeCcHHHHHH-------------HhcCCchhhhcCCchhhHhhCCCC
Confidence 73 799999999999999999987542 34566666655554
Q ss_pred --HHHHHHHHHHHHHHHH---------cCCCCccCChHHHHHHHHHhC
Q 026121 173 --RVIESAIQSALREARE---------KNITGNAETPFLLARVNELTG 209 (243)
Q Consensus 173 --~~i~~~I~~Al~ea~~---------~gi~Gk~vTPflL~~i~elT~ 209 (243)
+.+-.-|+++..--.. .|+--..=-|-||+|+.|+++
T Consensus 280 ~~~~v~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d~p~lL~~fser~q 327 (675)
T KOG4166|consen 280 PEDFVMSHIEQIARLISLAKKPVLYVGGGCLNSSDGPRLLGRFSERTQ 327 (675)
T ss_pred chhhHHHHHHHHHHHHHhccCceEEeCcccccCCcchHHHHHHHHhhc
Confidence 4445566666544333 234445557889999999875
No 69
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=45.29 E-value=1.6e+02 Score=24.45 Aligned_cols=16 Identities=6% Similarity=-0.087 Sum_probs=13.5
Q ss_pred HhHhhhCCeeEEeecc
Q 026121 102 LEYLETHGVCVAAYKT 117 (243)
Q Consensus 102 LE~LET~GV~V~gy~t 117 (243)
.++++..+|||+.+.+
T Consensus 84 ~~~~~~~~iP~i~~~~ 99 (299)
T cd04509 84 APVAEALKIPLISPGA 99 (299)
T ss_pred HHHHhhCCceEEeccC
Confidence 4678899999999974
No 70
>PF05589 DUF768: Protein of unknown function (DUF768); InterPro: IPR008486 This family consists of several uncharacterised hypothetical proteins from Rhizobium loti (Mesorhizobium loti).
Probab=45.05 E-value=22 Score=26.61 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=23.3
Q ss_pred CCcCCCCChHHHHHHHHHHHHHHHHcCCCCcc
Q 026121 164 IPREHAASGRVIESAIQSALREAREKNITGNA 195 (243)
Q Consensus 164 iP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~ 195 (243)
+|..-..|.-.+..+-++.+++|+++||.+.+
T Consensus 17 V~~~~~~d~is~~~La~kl~adA~a~Gi~~~e 48 (64)
T PF05589_consen 17 VPDTPKADIISAAELAEKLFADAEAAGIPREE 48 (64)
T ss_pred CCCccccchhhHHHHHHHHHHHHHHcCCCHHH
Confidence 44444444456677889999999999998654
No 71
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=45.04 E-value=60 Score=29.21 Aligned_cols=49 Identities=10% Similarity=0.117 Sum_probs=28.1
Q ss_pred hhcCCCeEEEecccccccchhhhHhHhhhCC--eeEEeeccCCCcceeecCCCccc
Q 026121 79 ELGRTPVAVVSAGIKSILDIPRTLEYLETHG--VCVAAYKTNEFPAFFTETSGSKV 132 (243)
Q Consensus 79 eL~rtpV~VVcaG~KsILDi~~TLE~LET~G--V~V~gy~td~fPaFy~~~Sg~~~ 132 (243)
++.+.|..++..|... ...-++.++ .| |.+.||. ++++.||....-+=.
T Consensus 208 ~~~~~~~~~~~~G~g~---~~~~~~~~~-~~~~v~~~g~~-~~~~~~~~~~d~~i~ 258 (357)
T PRK00726 208 LLPEALQVIHQTGKGD---LEEVRAAYA-AGINAEVVPFI-DDMAAAYAAADLVIC 258 (357)
T ss_pred HhhhCcEEEEEcCCCc---HHHHHHHhh-cCCcEEEeehH-hhHHHHHHhCCEEEE
Confidence 3444455556666654 244455555 55 6777886 667766666555443
No 72
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=45.00 E-value=18 Score=32.05 Aligned_cols=42 Identities=40% Similarity=0.520 Sum_probs=34.9
Q ss_pred HHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecc
Q 026121 42 ATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAG 91 (243)
Q Consensus 42 aTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG 91 (243)
.|-..++..||+||.|=|.|=|+ |+.-=|.+|+. |+.||+|=
T Consensus 54 ~t~~~~~~~gv~vi~tpG~GYv~-------Dl~~al~~l~~-P~lvvsaD 95 (177)
T COG2266 54 KTKEYLESVGVKVIETPGEGYVE-------DLRFALESLGT-PILVVSAD 95 (177)
T ss_pred hHHHHHHhcCceEEEcCCCChHH-------HHHHHHHhcCC-ceEEEecc
Confidence 45678888999999999998664 77777888887 99999884
No 73
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=44.92 E-value=53 Score=31.63 Aligned_cols=106 Identities=25% Similarity=0.340 Sum_probs=71.8
Q ss_pred CCCHHHHHHHHhcC-CCcccccccchH--HHHhcCCCchhhH---HHHHHHHHHCCCcEEEecccccccCCCcccccccc
Q 026121 2 RLSTEELERLAKLG-SKAQKTARRDIA--HVVATRGNGATTV---SATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISS 75 (243)
Q Consensus 2 GLs~~ele~la~~~-~~~~K~SrRDl~--~~~a~~~~GaTTV---aaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSa 75 (243)
|-|.+||.-+++.= +...++...+.. ..+..+.+|.-|. -+++++++.+|+||.-=|+=. ..+-==|+
T Consensus 50 get~eEi~G~~~am~~~~~~~~~p~~~~vDi~GTGGDg~~T~NiSt~aA~v~A~~Gv~VaKHGnrs------~sSksGsa 123 (338)
T COG0547 50 GETPEEIAGFAEAMREHAPKLPVPAADPVDIVGTGGDGANTINISTAAAIVAAAAGVPVAKHGNRS------VSSKSGSA 123 (338)
T ss_pred cCCHHHHHHHHHHHHHhcccCCCCCCCCCCeecCCCCCCCcccchHHHHHHHHhCCCcEEeECCCC------CCCCCcHH
Confidence 56788888777531 223455555433 5677888888774 466899999999999887533 23334468
Q ss_pred chhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcce
Q 026121 76 DLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAF 123 (243)
Q Consensus 76 DL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaF 123 (243)
|+-|- -|+.=-++..++.+.||+.|+.-+ |-...+|+|
T Consensus 124 Dvlea---------LGv~l~~~~e~~~~~l~~~g~~Fl-fAp~~hp~~ 161 (338)
T COG0547 124 DVLEA---------LGVNLELSPEQAARALEETGIGFL-FAPAYHPAM 161 (338)
T ss_pred HHHHH---------cCCCCCCCHHHHHHHHHhcCeEEE-EccccCHHH
Confidence 88774 355556788889999999998754 444555554
No 74
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=44.63 E-value=25 Score=34.70 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=42.1
Q ss_pred CcEEEecccccccCCCccccccccchhhhcCCCeEEEecccc---cccchhhhH-hHhhh--CCeeEEee
Q 026121 52 IPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIK---SILDIPRTL-EYLET--HGVCVAAY 115 (243)
Q Consensus 52 I~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~K---sILDi~~TL-E~LET--~GV~V~gy 115 (243)
-++.+.=|.||.+-|.. .-++||..+-+.||++|...-. |+-=+=+|+ +|... .||++.|.
T Consensus 78 ~d~~vIEG~gGl~dg~~---~s~adla~~l~~PviLVv~~~~g~~s~aa~l~g~~~~~~~~~~~~~i~Gv 144 (433)
T PRK13896 78 GDICVVEGVMGLYDGDV---SSTAMVAEALDLPVVLVVDAKAGMESVAATALGFRAYADRIGRDIDVAGV 144 (433)
T ss_pred CCEEEEECCCccccCCC---CCHHHHHHHHCCCEEEEEcCcccHHHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 67888889999987621 2488999999999999965332 333333443 55544 36888887
No 75
>PF14246 TetR_C_7: AefR-like transcriptional repressor, C-terminal region; PDB: 3BHQ_B 3CDL_A.
Probab=44.59 E-value=9 Score=25.94 Aligned_cols=47 Identities=30% Similarity=0.308 Sum_probs=26.9
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCCCChHHHHHHHHHHHH
Q 026121 134 CRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALR 184 (243)
Q Consensus 134 ~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ 184 (243)
.+++||+.+|+.+..-.+=..--..++..+.| .+.+++++++++|+.
T Consensus 3 L~~~Dp~~AA~qf~~l~~g~~~~~~llg~~~~----~s~~e~~~~v~~aV~ 49 (55)
T PF14246_consen 3 LRIDDPELAAEQFLGLLKGDLFWPALLGLAPP----PSAEEIERIVESAVD 49 (55)
T ss_dssp B-SSSHHHHHHHHHHHHHHHHCHHHHHHTS--------HHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhHHHHHHHhCCCCC----cCHHHHHHHHHHHHH
Confidence 36789999998876443322121223333322 247889999998875
No 76
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=44.55 E-value=94 Score=31.45 Aligned_cols=106 Identities=25% Similarity=0.340 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHhcC-CCccccccc--chHHHHhcCCCchhh--H-HHHHHHHHHCCCcEEEecccccccCCCcccccccc
Q 026121 2 RLSTEELERLAKLG-SKAQKTARR--DIAHVVATRGNGATT--V-SATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISS 75 (243)
Q Consensus 2 GLs~~ele~la~~~-~~~~K~SrR--Dl~~~~a~~~~GaTT--V-aaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSa 75 (243)
|.|.+||.-+++.- +...+++.- +.-..+..+.+|.-| + ..+.+++..+|+||+--|+=+--++. =|+
T Consensus 246 get~eEl~g~~~a~~~~~~~~~~~~~~~iD~~gtGgdg~~t~nist~aa~v~A~~Gv~V~kHG~r~~ss~~------Gsa 319 (531)
T PRK09522 246 GEHPNEIAGAATALLENAAPFPRPDYLFADIVGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKS------GSS 319 (531)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhCCCcEEEeCCCCCCCCc------cHH
Confidence 67889988887521 122334321 123345666666643 2 23467778899999999975433332 246
Q ss_pred chhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcce
Q 026121 76 DLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAF 123 (243)
Q Consensus 76 DL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaF 123 (243)
|+-|- -|.+-=++.....+.||..|+.-+ |....+|++
T Consensus 320 dvlea---------lGi~~~~~~~~~~~~l~~~g~~fl-~ap~~hpam 357 (531)
T PRK09522 320 DLLAA---------FGINLDMNADKSRQALDELGVCFL-FAPKYHTGF 357 (531)
T ss_pred HHHHH---------cCCCCCCCHHHHHHHHHHhCcEEE-EhhHhCHHH
Confidence 75542 355555667778888888888765 544444443
No 77
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=44.28 E-value=1.5e+02 Score=26.56 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHCCC-cEEEeccccccc-----CCCccccc-----cccchhhhcC---CCeEEEecccccccchhhhHh
Q 026121 38 TTVSATMFFASMVGI-PVFVTGGIGGVH-----RHGEHTMD-----ISSDLTELGR---TPVAVVSAGIKSILDIPRTLE 103 (243)
Q Consensus 38 TTVaaTm~lA~~aGI-~VFaTGGIGGVH-----rgae~t~D-----iSaDL~eL~r---tpV~VVcaG~KsILDi~~TLE 103 (243)
..-..+..+|+..|+ +|++|..--.-+ .|+...+| ...++.++.. ..+++-|+|... .++..+.
T Consensus 183 ~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~~~--~~~~~~~ 260 (351)
T cd08233 183 PIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGVQA--TLDTAID 260 (351)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCCHH--HHHHHHH
Confidence 455566789999999 798885321100 02222333 3344555542 568888888543 2466778
Q ss_pred HhhhCCeeEEeec
Q 026121 104 YLETHGVCVAAYK 116 (243)
Q Consensus 104 ~LET~GV~V~gy~ 116 (243)
.|...|. ++.++
T Consensus 261 ~l~~~G~-~v~~g 272 (351)
T cd08233 261 ALRPRGT-AVNVA 272 (351)
T ss_pred hccCCCE-EEEEc
Confidence 8887775 33343
No 78
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=43.87 E-value=2.8e+02 Score=27.16 Aligned_cols=67 Identities=13% Similarity=0.171 Sum_probs=45.2
Q ss_pred CCCcEEEecccccccCCCcc--ccccccchhhhcCCCeEEEecccccccchhhhHhHhh------hCCeeEEeeccCCC
Q 026121 50 VGIPVFVTGGIGGVHRHGEH--TMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLE------THGVCVAAYKTNEF 120 (243)
Q Consensus 50 aGI~VFaTGGIGGVHrgae~--t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LE------T~GV~V~gy~td~f 120 (243)
.+-++.+-=|.||.+-|... .....+||...-..||++|.... +| ..|+..++ ..|+++.|+=-+.|
T Consensus 76 ~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~-~~---~~t~~al~~~~~~~~~~i~i~GvIlN~v 150 (449)
T TIGR00379 76 KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ-RL---SRSAAAIVLGYRSFDPGVKLKGVILNRV 150 (449)
T ss_pred ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc-hH---HHHHHHHHHHHHhhCCCCCEEEEEEECC
Confidence 36789998999999866311 12467899999999999998754 54 23333322 35899888853333
No 79
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=43.50 E-value=24 Score=31.42 Aligned_cols=116 Identities=26% Similarity=0.351 Sum_probs=68.2
Q ss_pred hcCCCchhh---HHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhh
Q 026121 31 ATRGNGATT---VSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLET 107 (243)
Q Consensus 31 a~~~~GaTT---VaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET 107 (243)
..|.+|.-| -.+..+++..+|+||+-.|+=+=-++.+ |+|+-|- -|.+-=++.....+.||+
T Consensus 8 gTGGd~~~t~niSt~~a~vlAa~G~~V~kHG~r~~~~~~G------s~dvLe~---------LGv~~~~~~~~~~~~l~~ 72 (252)
T PF00591_consen 8 GTGGDGDKTFNISTAAAIVLAAAGVPVAKHGNRGVTSKSG------SADVLEA---------LGVPIDLSPEEAQAQLEE 72 (252)
T ss_dssp ESSCSSSTBHHHHHHHHHHHHHTTSEEEEEEESGCTTSSS------HHHHHHH---------STB-TT--HHHHHHHHHH
T ss_pred cCCCCCCCceehHHHHHHHHHccCCcEecccCCCcccccc------HHHHHHh---------cCCCcCCCHHHHHHHhhc
Confidence 346666666 3345677778899999999755434433 6777774 355555778888899999
Q ss_pred CCeeEEeeccCCCcceee-----cCCCcccCc-----------------cCCCHHHHHHHHHHHHhcCCCCeEEEEe
Q 026121 108 HGVCVAAYKTNEFPAFFT-----ETSGSKVPC-----------------RVDSPEDCARLIDVNMKLKLGSGLVIGV 162 (243)
Q Consensus 108 ~GV~V~gy~td~fPaFy~-----~~Sg~~~~~-----------------r~d~~~e~A~~~~~~~~l~l~~g~lvan 162 (243)
.|+..+ |..+.+|++.. +.=|++.++ -+-+++-+..+.++-..+|...+++|--
T Consensus 73 ~g~~fl-~~~~~~p~~~~l~~~R~~lg~rT~~N~l~pL~nP~~~~~~v~Gv~~~~~~~~~~~~~~~lg~~~~~vv~G 148 (252)
T PF00591_consen 73 TGIAFL-FAPNFHPALKRLAPVRRELGIRTVFNTLGPLLNPANAKHQVIGVFHPEYAELMAEALRDLGYGRALVVKG 148 (252)
T ss_dssp HSEEEE-EHHHHSGGHHHHHHHHHHHTS--SHHHHGHHHHTT--SEEEEEHSCHHHHHHHHHHHCCETESEEEEEEE
T ss_pred cCeEEe-cchhcCcchHHHHHHHHHcCCCCHHHhhhhhcCCcCCCcEEEEEeCHHHHHHHHHHHHhCCCceEEEEec
Confidence 998754 55666676532 111332221 2234555555555555666666666644
No 80
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=43.05 E-value=2.3e+02 Score=26.45 Aligned_cols=135 Identities=17% Similarity=0.211 Sum_probs=84.3
Q ss_pred HHHHHHHHCCCcEEEeccccccc-CCCccccccc-cchh----------hhcCCCeEEEe-cccccccchhhhHhHhhhC
Q 026121 42 ATMFFASMVGIPVFVTGGIGGVH-RHGEHTMDIS-SDLT----------ELGRTPVAVVS-AGIKSILDIPRTLEYLETH 108 (243)
Q Consensus 42 aTm~lA~~aGI~VFaTGGIGGVH-rgae~t~DiS-aDL~----------eL~rtpV~VVc-aG~KsILDi~~TLE~LET~ 108 (243)
.+..++..+|.+...|+|-|=-+ .|- -|.. -++. .-...||+|=+ +|-=..+++.+|.+.++..
T Consensus 24 ~SAri~e~aGf~Ai~~sg~~~a~~lG~---pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~a 100 (285)
T TIGR02317 24 MAALLAERAGFEAIYLSGAAVAASLGL---PDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDA 100 (285)
T ss_pred HHHHHHHHcCCCEEEEcHHHHHHhCCC---CCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHc
Confidence 44568889999999999866332 342 2321 1222 23455877744 6656699999999999999
Q ss_pred CeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCC-CCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHH
Q 026121 109 GVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKL-GSGLVIGVPIPREHAASGRVIESAIQSALREAR 187 (243)
Q Consensus 109 GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l-~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~ 187 (243)
||-=+-.-...+|- .-|+.-...+-++++.++-|++-....- +.-+|++.= ++.....++++|+++...++
T Consensus 101 G~agi~IEDq~~pK----~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART----Da~~~~g~deAI~Ra~ay~~ 172 (285)
T TIGR02317 101 GAAAVHIEDQVLPK----RCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIART----DARAVEGLDAAIERAKAYVE 172 (285)
T ss_pred CCeEEEEecCCCcc----ccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEc----CcccccCHHHHHHHHHHHHH
Confidence 98877666666662 2233334456677787777776555432 234555542 12222347888888776665
No 81
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=43.03 E-value=47 Score=31.12 Aligned_cols=88 Identities=25% Similarity=0.339 Sum_probs=55.0
Q ss_pred chHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccc-------cCCCcc-------ccccc----cchhh----hcC
Q 026121 25 DIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGV-------HRHGEH-------TMDIS----SDLTE----LGR 82 (243)
Q Consensus 25 Dl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGV-------Hrgae~-------t~DiS----aDL~e----L~r 82 (243)
|+|..+.....| +|+ .+......+|++.+.-.|.||- ||+... ..|.. .-|.+ ..+
T Consensus 178 ~vPVivK~~g~g-~s~-~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ 255 (326)
T cd02811 178 SVPVIVKEVGFG-ISR-ETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPD 255 (326)
T ss_pred CCCEEEEecCCC-CCH-HHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCC
Confidence 444445444457 454 5566677899999999999994 676332 12322 12222 224
Q ss_pred CCeEEEecccccccchhhhHhHhhhCCeeEEeeccCC
Q 026121 83 TPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNE 119 (243)
Q Consensus 83 tpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~ 119 (243)
.|| +.+-|..+=.|+-+.|. .|.-.++.++--
T Consensus 256 ipI-iasGGIr~~~dv~kal~----lGAd~V~i~~~~ 287 (326)
T cd02811 256 LPL-IASGGIRNGLDIAKALA----LGADLVGMAGPF 287 (326)
T ss_pred CcE-EEECCCCCHHHHHHHHH----hCCCEEEEcHHH
Confidence 553 34677899999988887 488888887543
No 82
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=42.87 E-value=23 Score=29.79 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=33.2
Q ss_pred hhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeec
Q 026121 79 ELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYK 116 (243)
Q Consensus 79 eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~ 116 (243)
.++..-++|+.++.-++=++.+++++|+..|++++|.=
T Consensus 149 ~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvV 186 (204)
T TIGR01007 149 RACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVV 186 (204)
T ss_pred HhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 34666688888999999999999999999999999974
No 83
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=42.44 E-value=1.1e+02 Score=27.40 Aligned_cols=94 Identities=12% Similarity=0.161 Sum_probs=62.3
Q ss_pred ccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCC------
Q 026121 95 ILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREH------ 168 (243)
Q Consensus 95 ILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~------ 168 (243)
.=.+....+||..+||| |.=.-.|-|..+..+. .+++..-.+..+.++.-.. .||.++..--=-.+
T Consensus 15 ~~~l~~i~d~l~~~~ip---f~v~vIP~~~d~~~~~--~~~l~~~~~f~~~L~~~~~---~Gg~I~lHGYtHq~~~~~sg 86 (243)
T PF10096_consen 15 LEKLKEIADYLYKYGIP---FSVAVIPVYVDPNGGI--TVNLSDNPEFVEYLRYLQA---RGGEIVLHGYTHQYGNSVSG 86 (243)
T ss_pred HHHHHHHHHHHHHCCCC---EEEEEEecccCCCCcc--cccchhhHHHHHHHHHHHh---cCCEEEEEecceecCCCccc
Confidence 33456778999999999 4444567777777766 4455555566666665444 45544443221111
Q ss_pred ------------CCChHHHHHHHHHHHHHHHHcCCCCccC
Q 026121 169 ------------AASGRVIESAIQSALREAREKNITGNAE 196 (243)
Q Consensus 169 ------------~~~~~~i~~~I~~Al~ea~~~gi~Gk~v 196 (243)
..+.+...+-|+++++...+.||.=+.+
T Consensus 87 ~~~ef~~~~~~~~~~~~~a~~ri~~gl~~l~~~gi~p~~f 126 (243)
T PF10096_consen 87 DGFEFWDSEFDAGDSEEEAKERIEKGLEILAELGIYPVGF 126 (243)
T ss_pred ccceeccccccccCCHHHHHHHHHHHHHHHHHCCCcccEE
Confidence 2677899999999999999999954433
No 84
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=42.37 E-value=47 Score=29.26 Aligned_cols=72 Identities=25% Similarity=0.330 Sum_probs=51.7
Q ss_pred hhhhcCCC--eEEEecccccccc---hhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHh
Q 026121 77 LTELGRTP--VAVVSAGIKSILD---IPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMK 151 (243)
Q Consensus 77 L~eL~rtp--V~VVcaG~KsILD---i~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~ 151 (243)
|.|...-| +..+..|+|.-.+ +...|+.||.+||.|...+| |-.||--..-..+ ..+.+--++++.+....+
T Consensus 114 L~e~~~~p~~Ifl~n~gV~l~~~~~~~~e~Lk~L~~~Gv~I~~CGt--Cl~~~gl~~~~~v-G~i~nm~~i~~~~~~adk 190 (194)
T TIGR03527 114 LSELDPLPKRILFVNGGVKLTTEGSEVLEDLKELEKKGVEILSCGT--CLDFYGLKDKLKV-GTITNMYDIVEALTTADK 190 (194)
T ss_pred HHhCCCCceEEEEEccceeeccCCchHHHHHHHHHHCCCEEEEeHH--HHHhcCCcccccC-CccCCHHHHHHHHHhcCC
Confidence 34455545 6667788876654 67778889999999999986 5566665555554 488888898887775543
No 85
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=42.09 E-value=2e+02 Score=23.85 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=16.5
Q ss_pred hhhhHhHhhhCCeeEEeecc
Q 026121 98 IPRTLEYLETHGVCVAAYKT 117 (243)
Q Consensus 98 i~~TLE~LET~GV~V~gy~t 117 (243)
.....++++..||||+.+.+
T Consensus 79 ~~~~~~~~~~~~ip~i~~~~ 98 (298)
T cd06268 79 ALAAAPVAEEAGVPLISPGA 98 (298)
T ss_pred HHhhHHHHHhCCCcEEccCC
Confidence 34667899999999999964
No 86
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=41.96 E-value=26 Score=27.75 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=38.9
Q ss_pred cchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecc------CCCcceee
Q 026121 75 SDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKT------NEFPAFFT 125 (243)
Q Consensus 75 aDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t------d~fPaFy~ 125 (243)
+|+..=++.|++++-.|+..--..+.-.++.|..|+||+.... .+.|-|.-
T Consensus 5 ~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G 61 (137)
T PF00205_consen 5 ADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLG 61 (137)
T ss_dssp HHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEE
T ss_pred HHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcc
Confidence 4566678999999999998777788888999999999988753 35666654
No 87
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=41.86 E-value=3e+02 Score=25.72 Aligned_cols=158 Identities=16% Similarity=0.154 Sum_probs=88.2
Q ss_pred HHHHHHHHC---------CCcEEEeccccccc-CCCcccccc-ccchhh----------hcCCCeEEEe-cccccccchh
Q 026121 42 ATMFFASMV---------GIPVFVTGGIGGVH-RHGEHTMDI-SSDLTE----------LGRTPVAVVS-AGIKSILDIP 99 (243)
Q Consensus 42 aTm~lA~~a---------GI~VFaTGGIGGVH-rgae~t~Di-SaDL~e----------L~rtpV~VVc-aG~KsILDi~ 99 (243)
.+..++..+ |-+...|.|-|=-. .|- -|. --+++| -..+||+|=+ +| -+.+.+.
T Consensus 20 ~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~---pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~~~~v~ 95 (285)
T TIGR02320 20 LSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGV---PDIEEASWTQRLDVVEFMFDVTTKPIILDGDTG-GNFEHFR 95 (285)
T ss_pred HHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCC---CCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCC-CCHHHHH
Confidence 456777788 99988888755221 232 232 122222 3356766644 56 7999999
Q ss_pred hhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCe-EEEEeCCCcCCCCChHHHHHH
Q 026121 100 RTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSG-LVIGVPIPREHAASGRVIESA 178 (243)
Q Consensus 100 ~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g-~lvanPiP~e~~~~~~~i~~~ 178 (243)
+|.+.|+..||-=+-.-...||.--.. .|.+.+..+-+.+|.++.|++-.+..-..- +|++.= +..+...-++++
T Consensus 96 r~V~~l~~aGvaGi~iEDq~~pk~cg~-~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiART---Da~~~~~~~~eA 171 (285)
T TIGR02320 96 RLVRKLERRGVSAVCIEDKLGLKKNSL-FGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARV---ESLILGKGMEDA 171 (285)
T ss_pred HHHHHHHHcCCeEEEEeccCCCccccc-cCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEec---ccccccCCHHHH
Confidence 999999999986555544444432111 233444567788898888887655422333 444441 100111236778
Q ss_pred HHHHHHHHHHcCCC-----CccCChHHHHHHHHHh
Q 026121 179 IQSALREAREKNIT-----GNAETPFLLARVNELT 208 (243)
Q Consensus 179 I~~Al~ea~~~gi~-----Gk~vTPflL~~i~elT 208 (243)
|++|.+.++ .|-. +...+|--+.++.+..
T Consensus 172 i~Ra~ay~e-AGAD~ifv~~~~~~~~ei~~~~~~~ 205 (285)
T TIGR02320 172 LKRAEAYAE-AGADGIMIHSRKKDPDEILEFARRF 205 (285)
T ss_pred HHHHHHHHH-cCCCEEEecCCCCCHHHHHHHHHHh
Confidence 887655443 4433 3334444555555544
No 88
>PRK05354 arginine decarboxylase; Provisional
Probab=41.23 E-value=2.3e+02 Score=29.58 Aligned_cols=115 Identities=19% Similarity=0.137 Sum_probs=71.5
Q ss_pred eEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEE-EeC
Q 026121 85 VAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVI-GVP 163 (243)
Q Consensus 85 V~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lv-anP 163 (243)
..++|.|.|+-=+|...|... .-|+.+-..+|+++|+-.+.+...+++...-+.| .||
T Consensus 147 ~lIi~NG~Kd~e~I~~Al~~~---------------------~lG~~v~ivIDs~~EL~~I~~~a~~~~~~p~IglRi~~ 205 (634)
T PRK05354 147 ALIVCNGYKDREYIRLALIGR---------------------KLGHKVFIVIEKLSELELILEEAKELGVKPRLGVRARL 205 (634)
T ss_pred cEEEcCCCCCHHHHHHHHHhH---------------------hcCCCEEEEECCHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 468899988765444443321 1222232468999999999998888876655544 345
Q ss_pred C-------------CcCCCCChHHHHHHHHHHHHHHHHcC----CCCccCChHHHHHHHHHhCCccHHHHHHHHHHHHHH
Q 026121 164 I-------------PREHAASGRVIESAIQSALREAREKN----ITGNAETPFLLARVNELTGGLSLASNIALVKNNALI 226 (243)
Q Consensus 164 i-------------P~e~~~~~~~i~~~I~~Al~ea~~~g----i~Gk~vTPflL~~i~elT~G~Sl~aNiaLv~nNA~l 226 (243)
- +..+-++.+++..+++.+ ++.+ +.|=-++. + |=-.|++.+++..+-
T Consensus 206 ~~~~~g~~~~tgG~~SKFGl~~~ei~~~i~~l----k~~~~l~~L~GLHfHi----------G--SQi~d~~~~~~al~e 269 (634)
T PRK05354 206 ASQGSGKWQSSGGEKSKFGLSATEVLEAVERL----REAGLLDCLQLLHFHL----------G--SQIANIRDIKTAVRE 269 (634)
T ss_pred CCCCCCCcccCCCCCCCCCCCHHHHHHHHHHH----HhCCCCCceEEEEEeC----------C--CCCCCHHHHHHHHHH
Confidence 2 346778888877755543 3333 22222221 1 112378888888898
Q ss_pred HHHHHHHHHH
Q 026121 227 GAKISVALAQ 236 (243)
Q Consensus 227 aa~IA~al~~ 236 (243)
++++..++.+
T Consensus 270 ~~~~~~eL~~ 279 (634)
T PRK05354 270 AARFYVELRK 279 (634)
T ss_pred HHHHHHHHHH
Confidence 8888888866
No 89
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=41.18 E-value=58 Score=33.61 Aligned_cols=58 Identities=12% Similarity=0.146 Sum_probs=41.2
Q ss_pred eccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCCCChHHHHHHHHHHHH
Q 026121 115 YKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALR 184 (243)
Q Consensus 115 y~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ 184 (243)
+....++-+|+..+.+.+ +.++-.-||++..-|+.+|+.++.+||.+.+++.|++.++
T Consensus 217 ~~~~~~~~vl~s~~aHyS------------~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~ 274 (608)
T TIGR03811 217 KDLQKLGKWLVPQTKHYS------------WLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAA 274 (608)
T ss_pred cccccceEEEECCCccHH------------HHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHh
Confidence 334455567777664432 2344456799988899999999999999998887766543
No 90
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=40.99 E-value=1.1e+02 Score=29.89 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=44.8
Q ss_pred hhhHhHhhhCCeeEEeecc-------C--CCcceeecCCCccc-Ccc---CCCHHHHHHHHHHHHhcCCCCeEEEEeCCC
Q 026121 99 PRTLEYLETHGVCVAAYKT-------N--EFPAFFTETSGSKV-PCR---VDSPEDCARLIDVNMKLKLGSGLVIGVPIP 165 (243)
Q Consensus 99 ~~TLE~LET~GV~V~gy~t-------d--~fPaFy~~~Sg~~~-~~r---~d~~~e~A~~~~~~~~l~l~~g~lvanPiP 165 (243)
+...+.+|.+|+|++|-.. | .+-.| ..+.|++. |+. +++.+++.+.. .++|.| +|.-|.-
T Consensus 88 ~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~-l~~~GIp~pp~~~~~~~~~~e~~~~~---~~igyP---vvvKp~~ 160 (472)
T PRK07178 88 AELAEICAERGIKFIGPSAEVIRRMGDKTEARRA-MIKAGVPVTPGSEGNLADLDEALAEA---ERIGYP---VMLKATS 160 (472)
T ss_pred HHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHH-HHHCCCCCCCCcCcCCCCHHHHHHHH---HHcCCc---EEEEeCC
Confidence 3445677777777766432 1 11111 23456666 432 56777765543 334443 3344432
Q ss_pred cC------CCCChHHHHHHHHHHHHHHHH
Q 026121 166 RE------HAASGRVIESAIQSALREARE 188 (243)
Q Consensus 166 ~e------~~~~~~~i~~~I~~Al~ea~~ 188 (243)
-- .--+.++++.+++++..++..
T Consensus 161 ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~ 189 (472)
T PRK07178 161 GGGGRGIRRCNSREELEQNFPRVISEATK 189 (472)
T ss_pred CCCCCCceEeCCHHHHHHHHHHHHHHHHH
Confidence 21 112678888888888887764
No 91
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=40.72 E-value=19 Score=27.37 Aligned_cols=67 Identities=24% Similarity=0.353 Sum_probs=36.4
Q ss_pred chhh-hcCCCeEEEecccccccch-hhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHH
Q 026121 76 DLTE-LGRTPVAVVSAGIKSILDI-PRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDV 148 (243)
Q Consensus 76 DL~e-L~rtpV~VVcaG~KsILDi-~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~ 148 (243)
|+.+ +++..+.|...-.-. -. .+.+||+- .|+||+.... .+..+... .+...-. .+++++.++.+..
T Consensus 63 e~~~~l~~~dv~l~p~~~~~--~~~~k~~e~~~-~G~pvi~~~~-~~~~~~~~-~~~~~~~-~~~~~~l~~~i~~ 131 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRFNE--GFPNKLLEAMA-AGKPVIASDN-GAEGIVEE-DGCGVLV-ANDPEELAEAIER 131 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS-S--CC-HHHHHHHC-TT--EEEEHH-HCHCHS----SEEEE--TT-HHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEeeCCC--cCcHHHHHHHH-hCCCEEECCc-chhhheee-cCCeEEE-CCCHHHHHHHHHH
Confidence 4443 777777776442111 22 56788887 9999999987 34455443 2323322 6788998887764
No 92
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=40.68 E-value=1.2e+02 Score=23.80 Aligned_cols=89 Identities=21% Similarity=0.305 Sum_probs=48.5
Q ss_pred EEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccC
Q 026121 54 VFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVP 133 (243)
Q Consensus 54 VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~ 133 (243)
|.+|||-+|+-+ .+..-|.+-+...|++++-. .+.=....+...|+..|..+..+.
T Consensus 3 ~lItGa~~giG~------~~a~~l~~~g~~~v~~~~r~-~~~~~~~~l~~~l~~~~~~~~~~~----------------- 58 (167)
T PF00106_consen 3 VLITGASSGIGR------ALARALARRGARVVILTSRS-EDSEGAQELIQELKAPGAKITFIE----------------- 58 (167)
T ss_dssp EEEETTTSHHHH------HHHHHHHHTTTEEEEEEESS-CHHHHHHHHHHHHHHTTSEEEEEE-----------------
T ss_pred EEEECCCCHHHH------HHHHHHHhcCceEEEEeeec-cccccccccccccccccccccccc-----------------
Confidence 688999999854 33333333322233443333 223334455666777776555443
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCeEEEEe-CCCc
Q 026121 134 CRVDSPEDCARLIDVNMKLKLGSGLVIGV-PIPR 166 (243)
Q Consensus 134 ~r~d~~~e~A~~~~~~~~l~l~~g~lvan-PiP~ 166 (243)
+.+.+++++.++++.-..-.-+--+||.| .++.
T Consensus 59 ~D~~~~~~~~~~~~~~~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 59 CDLSDPESIRALIEEVIKRFGPLDILINNAGIFS 92 (167)
T ss_dssp SETTSHHHHHHHHHHHHHHHSSESEEEEECSCTT
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 23567778888777665333344455555 4444
No 93
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=40.62 E-value=3.4e+02 Score=26.16 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=36.1
Q ss_pred hhhhcCCC-eEEEeccc-ccccchhhhHhHhhhCCee-EEee--ccCCCcce
Q 026121 77 LTELGRTP-VAVVSAGI-KSILDIPRTLEYLETHGVC-VAAY--KTNEFPAF 123 (243)
Q Consensus 77 L~eL~rtp-V~VVcaG~-KsILDi~~TLE~LET~GV~-V~gy--~td~fPaF 123 (243)
|.+++++. .++++.|. -++=|+...+||++..|.+ ++=. ++..||.|
T Consensus 218 L~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~ 269 (360)
T PRK12595 218 LKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKA 269 (360)
T ss_pred HHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCC
Confidence 34577776 67789997 7999999999999998884 3333 46677766
No 94
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=39.49 E-value=98 Score=23.38 Aligned_cols=77 Identities=21% Similarity=0.219 Sum_probs=43.0
Q ss_pred CCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhc-
Q 026121 3 LSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELG- 81 (243)
Q Consensus 3 Ls~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~- 81 (243)
++.+|+..+-+.+.++.=+.-|+-.........|+..+.-.. +...+.+|.
T Consensus 12 i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~----------------------------l~~~~~~l~~ 63 (109)
T cd01533 12 VSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAE----------------------------LVLRVGELAP 63 (109)
T ss_pred CCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHH----------------------------HHHHHHhcCC
Confidence 466777766543334556777775554433344443332211 122344553
Q ss_pred --CCCeEEEe-cccccccchhhhHhHhhhCCee
Q 026121 82 --RTPVAVVS-AGIKSILDIPRTLEYLETHGVC 111 (243)
Q Consensus 82 --rtpV~VVc-aG~KsILDi~~TLE~LET~GV~ 111 (243)
..||+|+| +|..| ......|..+|.+
T Consensus 64 ~~~~~ivv~C~~G~rs----~~a~~~L~~~G~~ 92 (109)
T cd01533 64 DPRTPIVVNCAGRTRS----IIGAQSLINAGLP 92 (109)
T ss_pred CCCCeEEEECCCCchH----HHHHHHHHHCCCC
Confidence 46899999 45544 3456788888875
No 95
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=39.48 E-value=34 Score=26.93 Aligned_cols=42 Identities=31% Similarity=0.537 Sum_probs=30.1
Q ss_pred cchhhhcC---CC-eEEEecccccccchhhhHhHhhhCCeeEEeec
Q 026121 75 SDLTELGR---TP-VAVVSAGIKSILDIPRTLEYLETHGVCVAAYK 116 (243)
Q Consensus 75 aDL~eL~r---tp-V~VVcaG~KsILDi~~TLE~LET~GV~V~gy~ 116 (243)
+||.+|-. .| +.||.+|.+...=-|...+||+.+|+.|---.
T Consensus 42 ~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~ 87 (110)
T PF04430_consen 42 EDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMD 87 (110)
T ss_dssp HHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-
T ss_pred HHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEEC
Confidence 34555443 34 99999999988888999999999999886443
No 96
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=39.32 E-value=2.6e+02 Score=26.58 Aligned_cols=182 Identities=15% Similarity=0.102 Sum_probs=100.8
Q ss_pred CCCHHHHHHHHhcCCC-----cccccccchHHHHhcC-CCchhhHHHHHHHHHHCCCcEEEecccccccCCCcccccccc
Q 026121 2 RLSTEELERLAKLGSK-----AQKTARRDIAHVVATR-GNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISS 75 (243)
Q Consensus 2 GLs~~ele~la~~~~~-----~~K~SrRDl~~~~a~~-~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSa 75 (243)
.|+.+++..|.+.+-+ ..-.++.-++.+...+ .+.--.+-.|+..|..+||+-+-+|+|=|... +
T Consensus 160 ~lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge----~----- 230 (371)
T PRK09240 160 PLSEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSD----W----- 230 (371)
T ss_pred CCCHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCc----c-----
Confidence 4789999999775421 1122344455544322 33455667789999999999788999988731 1
Q ss_pred chhhhcCCCeEEEecccccccchhhhHhHhhhC------CeeEEeeccCCCcceeecCCC-cccCccCCCHHHHHHHHHH
Q 026121 76 DLTELGRTPVAVVSAGIKSILDIPRTLEYLETH------GVCVAAYKTNEFPAFFTETSG-SKVPCRVDSPEDCARLIDV 148 (243)
Q Consensus 76 DL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~------GV~V~gy~td~fPaFy~~~Sg-~~~~~r~d~~~e~A~~~~~ 148 (243)
-..++++..+|.+|+.+ .|||.=+. +-.| +.-+ ..=+++|+.+++..
T Consensus 231 ----------------~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~---------P~~g~~~~~-~~~~~~e~l~~ia~ 284 (371)
T PRK09240 231 ----------------RTDALMTALHLRYLQRKYWQAEYSISFPRLR---------PCTGGIEPA-SIVSDKQLVQLICA 284 (371)
T ss_pred ----------------HHHHHHHHHHHHHHHHhCCCCceeeecCccc---------cCCCCCCCC-CCCCHHHHHHHHHH
Confidence 13567777889999864 56655333 2222 2222 23368899999887
Q ss_pred HHhcCCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHH
Q 026121 149 NMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKN 222 (243)
Q Consensus 149 ~~~l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPflL~~i~elT~G~Sl~aNiaLv~n 222 (243)
-+-+-=..++.++-==|. .+-+..+.-- ...+ .|...-+.|-..|.=--..=.+.++|+|++.-++.|++
T Consensus 285 ~Rl~lP~~~i~~s~g~~~--~lrd~~~~~~-~~~~-~ag~~~~~G~y~~~~~~~~qf~~~~~r~~~~~~~~i~~ 354 (371)
T PRK09240 285 FRLFLPDVEISLSTRESP--EFRDNLIPLG-ITKM-SAGSSTQPGGYADDHKELEQFEISDDRSVEEVAAALRA 354 (371)
T ss_pred HHHHCcccccEEecCCCH--HHHHHHHhhc-ceee-ccCccCCCCCcCCCCCCcCCccCCCCCCHHHHHHHHHH
Confidence 665532344555443211 1211111000 0011 11122334656554000011245579999998888875
No 97
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=38.98 E-value=1.9e+02 Score=29.02 Aligned_cols=185 Identities=18% Similarity=0.154 Sum_probs=106.9
Q ss_pred CCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHH---HCCCcEEEecccccccCCCccccccccchhh
Q 026121 3 LSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFAS---MVGIPVFVTGGIGGVHRHGEHTMDISSDLTE 79 (243)
Q Consensus 3 Ls~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~---~aGI~VFaTGGIGGVHrgae~t~DiSaDL~e 79 (243)
|+++|++|+.+-.-...-+|--=..-.+.+++.|-..+.-.|-..+ .+||++-+
T Consensus 126 l~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~~I~~h~----------------------- 182 (433)
T TIGR03279 126 LPPAEWQRIEQLRLSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQERRLQLHA----------------------- 182 (433)
T ss_pred CCHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEE-----------------------
Confidence 7899999998753456667766555555555555444444444333 35776532
Q ss_pred hcCCCeEEEecccccccchhhhHhHhhhC---------CeeEEeec-cCCCcceeecCCCcccCccCCCHHHHHHHHHH-
Q 026121 80 LGRTPVAVVSAGIKSILDIPRTLEYLETH---------GVCVAAYK-TNEFPAFFTETSGSKVPCRVDSPEDCARLIDV- 148 (243)
Q Consensus 80 L~rtpV~VVcaG~KsILDi~~TLE~LET~---------GV~V~gy~-td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~- 148 (243)
=+|+|-|...==++.+|+++|+.. .|-||=.| |..=+++| |.+-=++++++++|..
T Consensus 183 -----qiVlcPGiNDg~~L~~Ti~dL~~~~~~~~P~v~S~avVPVGlTk~R~~l~--------~l~~~~~e~A~~vi~~i 249 (433)
T TIGR03279 183 -----QVVVCPGINDGKHLERTLRDLAQFHDGDWPTVLSVAVVPVGLTRFRPEED--------ELTPVTPECARRVIAQV 249 (433)
T ss_pred -----EEEEcCCcCCHHHHHHHHHHHHhhcccCCCceeEEEEEccccccCCCCCC--------CCccCCHHHHHHHHHHH
Confidence 268999988877899999999977 35555555 43333333 2333356677766652
Q ss_pred -----HHhcCCCCeEEE--------E-eCCCcCCCCCh-HH----------HHHHHHHHHHHHHHc--------CCCCcc
Q 026121 149 -----NMKLKLGSGLVI--------G-VPIPREHAASG-RV----------IESAIQSALREAREK--------NITGNA 195 (243)
Q Consensus 149 -----~~~l~l~~g~lv--------a-nPiP~e~~~~~-~~----------i~~~I~~Al~ea~~~--------gi~Gk~ 195 (243)
+..-..++..+. | .|+|++..-++ .+ ...-.++++++.... =++|..
T Consensus 250 e~~q~~~~~~~g~~fv~~sDEfYl~A~~~~P~~~~Y~~~pQ~enGVGm~r~f~~e~~~~~~~l~~~~~~~~~~~~vtG~~ 329 (433)
T TIGR03279 250 EALQTQFQRQLGSRFAWLADEWYLIAGEPLPPRAHYEDYPQLENGVGSIRSFLEEFDRQAEHLPKKIAPARRLSWVVGNA 329 (433)
T ss_pred HHHHHHHHHHcCCceEEEchhhhhhcCCCCCChhHcCCCcccccchhhHHHHHHHHHHHHHhchhhcCCCcEEEEEEecc
Confidence 222234555533 2 58887654321 10 111122333333321 146999
Q ss_pred CChHHHHHHHHHhCCccHHHHHHHHHHH
Q 026121 196 ETPFLLARVNELTGGLSLASNIALVKNN 223 (243)
Q Consensus 196 vTPflL~~i~elT~G~Sl~aNiaLv~nN 223 (243)
.-||+-.-++++..-.-++.++--|+|+
T Consensus 330 ~~~~~~~~~~~l~~~~~~~v~v~~i~N~ 357 (433)
T TIGR03279 330 VEQAFEPLVERLNAVEGLELDLHGLASD 357 (433)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 9999988888876555555555445553
No 98
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=38.52 E-value=45 Score=29.59 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=9.4
Q ss_pred cchhhhHhHhhhCCeeE
Q 026121 96 LDIPRTLEYLETHGVCV 112 (243)
Q Consensus 96 LDi~~TLE~LET~GV~V 112 (243)
+++..-+++|..+|++|
T Consensus 235 ~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 235 ITIGELKAYLAEQGIPV 251 (253)
T ss_pred CCHHHHHHHHHHCCCcc
Confidence 44455555666666554
No 99
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=38.15 E-value=1.9e+02 Score=26.66 Aligned_cols=123 Identities=19% Similarity=0.217 Sum_probs=62.6
Q ss_pred CCC-HHHHHHHHhcCCCcccc-----cccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCcccccccc
Q 026121 2 RLS-TEELERLAKLGSKAQKT-----ARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISS 75 (243)
Q Consensus 2 GLs-~~ele~la~~~~~~~K~-----SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSa 75 (243)
|++ ++++++|.+.+-+..-- ...++...+..+....-+.--|+..|+.+||+|- +|+|=| | | | |+
T Consensus 139 g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~-~~~iiG-l-g-E-t~---- 209 (340)
T TIGR03699 139 GLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTT-ATMMFG-H-V-E-TL---- 209 (340)
T ss_pred CCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcc-ceeEee-C-C-C-CH----
Confidence 444 67778887653211111 1112222232232222334688999999999964 555644 4 3 2 22
Q ss_pred chhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcc-eeecCCCcccCccCCCHHHHHHHHHHHHhcCC
Q 026121 76 DLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPA-FFTETSGSKVPCRVDSPEDCARLIDVNMKLKL 154 (243)
Q Consensus 76 DL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPa-Fy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l 154 (243)
=|+-.++++|...++-..+|.. ..|- |....+.+.- ...-+++|..+++...+-+ +
T Consensus 210 --------------------ed~~~~l~~l~~l~~~~~~~~~-fIP~~f~p~~tpl~~-~~~~~~~e~l~~iA~~Rl~-l 266 (340)
T TIGR03699 210 --------------------EDRIEHLERIRELQDKTGGFTA-FIPWTFQPGNTELGK-KRPATSTEYLKVLAISRIF-L 266 (340)
T ss_pred --------------------HHHHHHHHHHHHhchhhCCeeE-EEeecccCCCCcccC-CCCCCHHHHHHHHHHHHHc-C
Confidence 2334456677777765555541 1222 2212333221 1234788988888766554 3
Q ss_pred CC
Q 026121 155 GS 156 (243)
Q Consensus 155 ~~ 156 (243)
+.
T Consensus 267 p~ 268 (340)
T TIGR03699 267 DN 268 (340)
T ss_pred CC
Confidence 44
No 100
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=38.13 E-value=2.4e+02 Score=26.06 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=45.2
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCCCCh----------HHHHHHHHHHHHHHHHcC----CCCccCChHH
Q 026121 135 RVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASG----------RVIESAIQSALREAREKN----ITGNAETPFL 200 (243)
Q Consensus 135 r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~----------~~i~~~I~~Al~ea~~~g----i~Gk~vTPfl 200 (243)
+.-+++|+.+.++.-.++|...-++..--.|. +..+. ..+-+.|++..+.+.+.| ++...+|+=.
T Consensus 39 ~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~-~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~~g~~~~~~~~~lt~e~ 117 (336)
T PRK06245 39 SLLSPEEVKEILRRGADAGCTEALFTFGEVPD-ESYERIKEQLAEMGYSSILEYLYDLCELALEEGLLPHTNAGILTREE 117 (336)
T ss_pred CcCCHHHHHHHHHHHHHCCCCEEEEecCCCCc-cchhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCCccccCCCCCHHH
Confidence 46789999999999889998884444322222 12111 333445554444444433 4677888888
Q ss_pred HHHHHHHh
Q 026121 201 LARVNELT 208 (243)
Q Consensus 201 L~~i~elT 208 (243)
++++.+..
T Consensus 118 i~~Lk~ag 125 (336)
T PRK06245 118 MEKLKEVN 125 (336)
T ss_pred HHHHHHhC
Confidence 88888863
No 101
>PRK07677 short chain dehydrogenase; Provisional
Probab=38.10 E-value=2.1e+02 Score=24.25 Aligned_cols=13 Identities=38% Similarity=0.756 Sum_probs=10.8
Q ss_pred cEEEecccccccC
Q 026121 53 PVFVTGGIGGVHR 65 (243)
Q Consensus 53 ~VFaTGGIGGVHr 65 (243)
.+++|||-||+-+
T Consensus 3 ~~lItG~s~giG~ 15 (252)
T PRK07677 3 VVIITGGSSGMGK 15 (252)
T ss_pred EEEEeCCCChHHH
Confidence 5789999999855
No 102
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=38.10 E-value=63 Score=26.93 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEec
Q 026121 2 RLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTG 58 (243)
Q Consensus 2 GLs~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTG 58 (243)
|.....++.|..-..+.+|+++.-+.... ........+.+-..+|+..||+|.|+|
T Consensus 155 g~~~~~~~~l~~l~~d~iKld~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~via~g 210 (241)
T smart00052 155 GTGYSSLSYLKRLPVDLLKIDKSFVRDLQ-TDPEDEAIVQSIIELAQKLGLQVVAEG 210 (241)
T ss_pred CCcHHHHHHHHhCCCCeEEECHHHHhhhc-cChhHHHHHHHHHHHHHHCCCeEEEec
Confidence 55666777776654577888876554432 233345667788889999999999984
No 103
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=38.05 E-value=1.1e+02 Score=28.54 Aligned_cols=166 Identities=14% Similarity=0.124 Sum_probs=83.6
Q ss_pred CHHHHHHHHhcCCCcccccccch-HH----HHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchh
Q 026121 4 STEELERLAKLGSKAQKTARRDI-AH----VVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLT 78 (243)
Q Consensus 4 s~~ele~la~~~~~~~K~SrRDl-~~----~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~ 78 (243)
++|+|++|.+.+-+..-.+.++. .. -+..+....-..=-++..|+.+||++-+ |+|=| | | |
T Consensus 140 ~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s-~~i~G-~-~-E---------- 205 (343)
T TIGR03551 140 VEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTA-TIMYG-H-V-E---------- 205 (343)
T ss_pred HHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccc-eEEEe-c-C-C----------
Confidence 57778999876422222233332 11 2222221222345899999999999855 44544 2 2 1
Q ss_pred hhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccC-CCcceeecCCCcccC---ccCCCHHHHHHHHHHHHhcCC
Q 026121 79 ELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTN-EFPAFFTETSGSKVP---CRVDSPEDCARLIDVNMKLKL 154 (243)
Q Consensus 79 eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td-~fPaFy~~~Sg~~~~---~r~d~~~e~A~~~~~~~~l~l 154 (243)
+.=|+-.++.+|...++.-.||+.- -+| |..+.+++.-. ..--+++|..+++..-+-+ +
T Consensus 206 ---------------t~ed~~~~l~~lr~l~~~~~~~~~~iP~~-f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~-l 268 (343)
T TIGR03551 206 ---------------TPEHWVDHLLILREIQEETGGFTEFVPLP-FVHYNAPLYLKGMARPGPTGREDLKVHAIARIL-L 268 (343)
T ss_pred ---------------CHHHHHHHHHHHHHhhHHhCCeeEEEecc-ccCCCCccccccCCCCCCCHHHHHHHHHHHHHh-C
Confidence 3345666777777777654444311 111 22234443211 1113788999988876654 4
Q ss_pred CCe-EEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCcc
Q 026121 155 GSG-LVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLS 212 (243)
Q Consensus 155 ~~g-~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPflL~~i~elT~G~S 212 (243)
|.. +-|+-|- ..+.+..- +-.-.+-..++.| | -+-.+|....+..+
T Consensus 269 p~~~~~i~a~~---~~l~~~~~-----~~~l~~Gan~~~g---~-~~~e~v~~~~g~~~ 315 (343)
T TIGR03551 269 HGLIDNIQASW---VKLGKKLA-----QVALRCGANDLGG---T-LMEESISRAAGASH 315 (343)
T ss_pred CCcccCeeccc---cccCHHHH-----HHHHhCCCccCCc---c-ceecccccccCCCC
Confidence 655 2455443 13333211 1222233344445 2 33366666666555
No 104
>PRK07890 short chain dehydrogenase; Provisional
Probab=37.96 E-value=2.5e+02 Score=23.69 Aligned_cols=15 Identities=40% Similarity=0.445 Sum_probs=12.4
Q ss_pred CCcEEEecccccccC
Q 026121 51 GIPVFVTGGIGGVHR 65 (243)
Q Consensus 51 GI~VFaTGGIGGVHr 65 (243)
+=.+|+|||-||+-+
T Consensus 5 ~k~vlItGa~~~IG~ 19 (258)
T PRK07890 5 GKVVVVSGVGPGLGR 19 (258)
T ss_pred CCEEEEECCCCcHHH
Confidence 456999999999955
No 105
>PRK00758 GMP synthase subunit A; Validated
Probab=37.78 E-value=32 Score=28.85 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=27.5
Q ss_pred hhhhcCC-CeEEEecccccccchhhhHhHhhhCCeeEEeec
Q 026121 77 LTELGRT-PVAVVSAGIKSILDIPRTLEYLETHGVCVAAYK 116 (243)
Q Consensus 77 L~eL~rt-pV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~ 116 (243)
..+|.+. .-+|++-|+ ++-+++...++|...++||+|..
T Consensus 35 ~~~l~~~~dgivi~Gg~-~~~~~~~~~~~l~~~~~PilGIC 74 (184)
T PRK00758 35 VEEIKAFEDGLILSGGP-DIERAGNCPEYLKELDVPILGIC 74 (184)
T ss_pred HHHHhhcCCEEEECCCC-ChhhccccHHHHHhCCCCEEEEe
Confidence 4455555 677777777 66556667778877889998874
No 106
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=37.70 E-value=70 Score=28.55 Aligned_cols=19 Identities=11% Similarity=0.030 Sum_probs=10.2
Q ss_pred HHHHHHHHHHCCCcEEEec
Q 026121 40 VSATMFFASMVGIPVFVTG 58 (243)
Q Consensus 40 VaaTm~lA~~aGI~VFaTG 58 (243)
..-...+|-.+|..+.=|.
T Consensus 134 i~~a~~ia~eaGADfvKTs 152 (211)
T TIGR00126 134 IRKACEICIDAGADFVKTS 152 (211)
T ss_pred HHHHHHHHHHhCCCEEEeC
Confidence 3344555566666655543
No 107
>PTZ00256 glutathione peroxidase; Provisional
Probab=37.65 E-value=1.2e+02 Score=25.49 Aligned_cols=59 Identities=12% Similarity=0.211 Sum_probs=33.0
Q ss_pred hhhhcCCCe-EEE-----eccccc-ccchhhhHhHhhhCCeeEEeeccCC-----------CcceeecCCCcccCcc
Q 026121 77 LTELGRTPV-AVV-----SAGIKS-ILDIPRTLEYLETHGVCVAAYKTNE-----------FPAFFTETSGSKVPCR 135 (243)
Q Consensus 77 L~eL~rtpV-~VV-----caG~Ks-ILDi~~TLE~LET~GV~V~gy~td~-----------fPaFy~~~Sg~~~~~r 135 (243)
|.++.--|| +++ |--++. +=++.+-.+.+..+||.|+|+..+. ...|+..+-|+..|.-
T Consensus 35 Ls~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~ 111 (183)
T PTZ00256 35 LSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLF 111 (183)
T ss_pred HHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCc
Confidence 445444444 344 555554 2245555566677899999997432 2345544556655543
No 108
>PRK05926 hypothetical protein; Provisional
Probab=37.31 E-value=39 Score=32.48 Aligned_cols=22 Identities=23% Similarity=0.060 Sum_probs=19.9
Q ss_pred HHHHHHHHCCCcEEEeccccccc
Q 026121 42 ATMFFASMVGIPVFVTGGIGGVH 64 (243)
Q Consensus 42 aTm~lA~~aGI~VFaTGGIGGVH 64 (243)
-||..||.+||++-+| +|+|.-
T Consensus 211 ~~i~~a~~~Gi~~~sg-mi~G~g 232 (370)
T PRK05926 211 EIHKTAHSLGIPSNAT-MLCYHR 232 (370)
T ss_pred HHHHHHHHcCCcccCc-eEEeCC
Confidence 7899999999999998 999863
No 109
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=37.28 E-value=31 Score=31.26 Aligned_cols=86 Identities=20% Similarity=0.225 Sum_probs=56.8
Q ss_pred HHhcCCCchhhHHHHHHHHHH----CCCcEEEecccccccCCCccccccccchhhhcCCCeEEEec-ccccccchhhhHh
Q 026121 29 VVATRGNGATTVSATMFFASM----VGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSA-GIKSILDIPRTLE 103 (243)
Q Consensus 29 ~~a~~~~GaTTVaaTm~lA~~----aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVca-G~KsILDi~~TLE 103 (243)
.+|.+.-|-+ +--.-+..++ .--+....=|-||+.-==.+.+ -=+|+...=+-||++|+. .-=+|=+-=.|+|
T Consensus 81 hlAa~~eg~~-I~~~~l~~~l~~l~~~~d~vlVEGAGGl~vPl~~~~-~~~D~~~~~~lpvILV~~~~LGtINHtlLt~e 158 (223)
T COG0132 81 HLAAELEGRT-IDLEKLSQGLRQLLKKYDLVLVEGAGGLLVPLTEEY-TFADLAVQLQLPVILVVGIKLGTINHTLLTVE 158 (223)
T ss_pred HHHHhhcCCc-ccHHHHHHHHHhhhcccCEEEEeCCCceeeecCCcc-cHHHHHHHcCCCEEEEecCCccHHHHHHHHHH
Confidence 3444444333 6555555533 2334677888998854222222 236888888899776654 4457888889999
Q ss_pred HhhhCCeeEEeec
Q 026121 104 YLETHGVCVAAYK 116 (243)
Q Consensus 104 ~LET~GV~V~gy~ 116 (243)
+|...|+|+.|+=
T Consensus 159 al~~~gl~l~G~I 171 (223)
T COG0132 159 ALRARGLPLAGWV 171 (223)
T ss_pred HHHHCCCCEEEEE
Confidence 9999999999984
No 110
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=37.23 E-value=2.1e+02 Score=25.48 Aligned_cols=40 Identities=20% Similarity=0.028 Sum_probs=25.6
Q ss_pred hhhhcCC-CeEEEecccccccchhhhHhHhhhCCeeEEeecc
Q 026121 77 LTELGRT-PVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKT 117 (243)
Q Consensus 77 L~eL~rt-pV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t 117 (243)
..+|-+. .|.+|. |+-+--......++++..+||++++..
T Consensus 59 a~~li~~~~v~aii-g~~~s~~~~~~~~~~~~~~ip~i~~~s 99 (346)
T cd06330 59 ARELVENEGVDMLI-GLISSGVALAVAPVAEELKVFFIATDP 99 (346)
T ss_pred HHHHHhccCCcEEE-cccchHHHHHHHHHHHHcCCeEEEcCC
Confidence 3445444 565555 443333445667899999999999853
No 111
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=36.95 E-value=1.6e+02 Score=25.84 Aligned_cols=92 Identities=13% Similarity=0.141 Sum_probs=49.1
Q ss_pred cchhhhHhHhhhCCeeEEee--ccCCCcceeecCCCcc-cCccC-CCHHHHHHHHHHHHhcCCCCeEEEEeC--CCcCCC
Q 026121 96 LDIPRTLEYLETHGVCVAAY--KTNEFPAFFTETSGSK-VPCRV-DSPEDCARLIDVNMKLKLGSGLVIGVP--IPREHA 169 (243)
Q Consensus 96 LDi~~TLE~LET~GV~V~gy--~td~fPaFy~~~Sg~~-~~~r~-d~~~e~A~~~~~~~~l~l~~g~lvanP--iP~e~~ 169 (243)
+|+....+.|+..|+.|..+ ...++. ....+.. .|.+- ...+.+.+.++....||-+ .|...+ .|....
T Consensus 40 ~~~~~~~~~l~~~gl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lga~--~i~~~~g~~~~~~~ 114 (258)
T PRK09997 40 YDIEELKQVLASNKLEHTLHNLPAGDWA---AGERGIACIPGREEEFRDGVAAAIRYARALGNK--KINCLVGKTPAGFS 114 (258)
T ss_pred CCHHHHHHHHHHcCCcEEEEcCCCCccc---cCcCccccCCCcHHHHHHHHHHHHHHHHHhCCC--EEEECCCCCCCCCC
Confidence 57888899999999999764 222221 1110100 11111 1124567788888888755 333222 333222
Q ss_pred CC--hHHHHHHHHHHHHHHHHcCCC
Q 026121 170 AS--GRVIESAIQSALREAREKNIT 192 (243)
Q Consensus 170 ~~--~~~i~~~I~~Al~ea~~~gi~ 192 (243)
-+ .+.+.+.+.++.+.|++.||+
T Consensus 115 ~~~~~~~~~~~l~~l~~~a~~~Gv~ 139 (258)
T PRK09997 115 SEQIHATLVENLRYAANMLMKEDIL 139 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 11 133445556677777888884
No 112
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=36.78 E-value=27 Score=24.80 Aligned_cols=62 Identities=21% Similarity=0.159 Sum_probs=39.1
Q ss_pred HHHHHCCCcEEEecccccccCCCccccccccchhhhcC-CCeEEEecccccccchhhhHhHhhhCCeeEEeec
Q 026121 45 FFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGR-TPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYK 116 (243)
Q Consensus 45 ~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~r-tpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~ 116 (243)
.+-+.+|++++.-..-+..|.. ++..+.+ ..+.++|-...+ =++-..+|.+..+|++++..-
T Consensus 19 ~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~d~~i~iS~sg~t-~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 19 ELLELTGIEVVALIATELEHAS---------LLSLLRKGDVVIALSYSGRT-EELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred HHhcccCCceEEeCCcHHHHHH---------HHhcCCCCCEEEEEECCCCC-HHHHHHHHHHHHcCCeEEEEe
Confidence 3444458888876655544431 1223333 345666655544 457778999999999999875
No 113
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=36.78 E-value=3.4e+02 Score=27.03 Aligned_cols=145 Identities=19% Similarity=0.176 Sum_probs=83.4
Q ss_pred HCCCcEEEecccccccCCC-----ccccccc---------cch--hhhcCCCeEEEecccccccchhhhHhHhhhCCeeE
Q 026121 49 MVGIPVFVTGGIGGVHRHG-----EHTMDIS---------SDL--TELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 112 (243)
Q Consensus 49 ~aGI~VFaTGGIGGVHrga-----e~t~DiS---------aDL--~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V 112 (243)
+--..|||+|+-|+|-|-- +..|++= .|+ .....--..+||.=.-.=.|+...+--=-.+++++
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~ 156 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPKGVVI 156 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhcccccccccceeeeccccccchhhhhhhhcccccee
Confidence 3456799999999997610 0012221 122 11112234445544444456666665555667788
Q ss_pred EeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEE-------eCCCcCCCCChHHHHHHHHHHHHH
Q 026121 113 AAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIG-------VPIPREHAASGRVIESAIQSALRE 185 (243)
Q Consensus 113 ~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lva-------nPiP~e~~~~~~~i~~~I~~Al~e 185 (243)
+.-+....|.|- ....|+.+| .+..=.++.+....|+...+||. |+.|.-... -..+..+=..+.++
T Consensus 157 v~~~~ggrp~~e----d~~~p~~VD-~~g~knlvdA~~~aGvk~~vlv~si~~~~~~~~~~~~~~-~~~~~~~k~~~e~~ 230 (411)
T KOG1203|consen 157 VIKGAGGRPEEE----DIVTPEKVD-YEGTKNLVDACKKAGVKRVVLVGSIGGTKFNQPPNILLL-NGLVLKAKLKAEKF 230 (411)
T ss_pred EEecccCCCCcc----cCCCcceec-HHHHHHHHHHHHHhCCceEEEEEeecCcccCCCchhhhh-hhhhhHHHHhHHHH
Confidence 888888888887 456677776 56777888888899999999982 333322110 11111222334455
Q ss_pred HHHcCCCCccCChH
Q 026121 186 AREKNITGNAETPF 199 (243)
Q Consensus 186 a~~~gi~Gk~vTPf 199 (243)
..+.|+..--+.|=
T Consensus 231 ~~~Sgl~ytiIR~g 244 (411)
T KOG1203|consen 231 LQDSGLPYTIIRPG 244 (411)
T ss_pred HHhcCCCcEEEecc
Confidence 55777765555443
No 114
>PRK00347 putative DNA-binding transcriptional regulator; Reviewed
Probab=36.68 E-value=21 Score=32.47 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=51.4
Q ss_pred HhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCC-CChHHHHHHHHHH
Q 026121 104 YLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHA-ASGRVIESAIQSA 182 (243)
Q Consensus 104 ~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~-~~~~~i~~~I~~A 182 (243)
|+|..||+-.-=+...||-=.|. =-....+|.+++.. -|....+||.+=-|.-.. .+...+|....++
T Consensus 132 ~vEVKsvtL~~~~~A~FPDapT~-------RG~kHl~eL~~l~~----~G~ra~vlFvvqr~d~~~F~P~~~~Dp~fa~~ 200 (234)
T PRK00347 132 YVEVKSVTLEENGLAMFPDAVTE-------RGQKHLRELIELAK----EGHRAVLLFLVQRSDIKRFSPADEIDPKYAEL 200 (234)
T ss_pred EEEEcCEEeCCCCEEECCCCCcH-------HHHHHHHHHHHHHH----CCCcEEEEEEEeCCCCCEEeECcccCHHHHHH
Confidence 99999997552124566651111 11223445444333 377888888887775444 5777888999999
Q ss_pred HHHHHHcCCC
Q 026121 183 LREAREKNIT 192 (243)
Q Consensus 183 l~ea~~~gi~ 192 (243)
+++|.++|+.
T Consensus 201 l~~A~~~GV~ 210 (234)
T PRK00347 201 LREAVKAGVE 210 (234)
T ss_pred HHHHHHCCCE
Confidence 9999999985
No 115
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=36.56 E-value=3.1e+02 Score=24.39 Aligned_cols=35 Identities=9% Similarity=-0.038 Sum_probs=22.3
Q ss_pred CCCeEEEecccccccchhhhHhHhhhCCeeEEeecc
Q 026121 82 RTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKT 117 (243)
Q Consensus 82 rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t 117 (243)
+-.|.++..+. +-----....++|..+||++++..
T Consensus 65 ~~~V~~i~G~~-~s~~~~a~~~~~~~~~vp~i~~~~ 99 (340)
T cd06349 65 DPRIVAVLGDF-SSGVSMAASPIYQRAGLVQLSPTN 99 (340)
T ss_pred cCCeEEEECCC-ccHhHHHhHHHHHhCCCeEEecCC
Confidence 34576665433 222222456789999999999863
No 116
>PRK13695 putative NTPase; Provisional
Probab=36.35 E-value=2.4e+02 Score=23.10 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHhcCC-CCeEEEEeCC-CcCCCCChHHHHHHHHHHHHHHHHcCC-----CCccCChHHHHHHHHHhCC
Q 026121 138 SPEDCARLIDVNMKLKL-GSGLVIGVPI-PREHAASGRVIESAIQSALREAREKNI-----TGNAETPFLLARVNELTGG 210 (243)
Q Consensus 138 ~~~e~A~~~~~~~~l~l-~~g~lvanPi-P~e~~~~~~~i~~~I~~Al~ea~~~gi-----~Gk~vTPflL~~i~elT~G 210 (243)
+++...++....-..-+ +.-+|+..-+ |.+ ..+....+++.++-+.|. .-|....++.++|.++-+|
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e------~~~~~~~~~l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKME------LKSPKFVKAVEEVLDSEKPVIATLHRRSVHPFVQEIKSRPGG 151 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcch------hhhHHHHHHHHHHHhCCCeEEEEECchhhHHHHHHHhccCCc
Confidence 45555555443332222 3445665532 211 222223344444444443 2566667888999999998
Q ss_pred ccHH
Q 026121 211 LSLA 214 (243)
Q Consensus 211 ~Sl~ 214 (243)
+-.+
T Consensus 152 ~i~~ 155 (174)
T PRK13695 152 RVYE 155 (174)
T ss_pred EEEE
Confidence 7653
No 117
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=36.26 E-value=34 Score=31.03 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=41.9
Q ss_pred ccccCCCccccccccchhhhcC-CCeEEEeccc---ccccchhhhHhHhhhCCeeEEee
Q 026121 61 GGVHRHGEHTMDISSDLTELGR-TPVAVVSAGI---KSILDIPRTLEYLETHGVCVAAY 115 (243)
Q Consensus 61 GGVHrgae~t~DiSaDL~eL~r-tpV~VVcaG~---KsILDi~~TLE~LET~GV~V~gy 115 (243)
|||.+-.- .-.-|-||.+|+. +|++|+|-=. -++++.+.-.+|=+.+|.|++..
T Consensus 145 gGvl~R~G-HTEaavdLa~lAGl~p~~vicEil~~dG~ma~~~~~~~fA~~~~l~~isi 202 (214)
T PRK01792 145 GGVLTRRG-HTEAAVDLARLAGYKEAGVICEITNDDGTMARTPEIVEFAKKFGYAVVTI 202 (214)
T ss_pred CCCccCCC-hHHHHHHHHHHcCCCceEEEEEEecCCCCccCHHHHHHHHHHcCCcEEEH
Confidence 56654221 3477999999995 5999999533 45999999999999999999864
No 118
>PRK07478 short chain dehydrogenase; Provisional
Probab=36.26 E-value=2.5e+02 Score=23.85 Aligned_cols=101 Identities=12% Similarity=0.079 Sum_probs=52.1
Q ss_pred CCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCc
Q 026121 51 GIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGS 130 (243)
Q Consensus 51 GI~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~ 130 (243)
|=.+++|||-||+-+ .+...|.+-+- .|++++-..+ ++....+.|+.+|..+. |
T Consensus 6 ~k~~lItGas~giG~------~ia~~l~~~G~-~v~~~~r~~~---~~~~~~~~~~~~~~~~~---------~------- 59 (254)
T PRK07478 6 GKVAIITGASSGIGR------AAAKLFAREGA-KVVVGARRQA---ELDQLVAEIRAEGGEAV---------A------- 59 (254)
T ss_pred CCEEEEeCCCChHHH------HHHHHHHHCCC-EEEEEeCCHH---HHHHHHHHHHhcCCcEE---------E-------
Confidence 446999999999844 45555555443 4555554443 23344555555553222 1
Q ss_pred ccCccCCCHHHHHHHHHH-HHhcCCCCeEEEEeC-C--C--cCCCCChHHHHHHH
Q 026121 131 KVPCRVDSPEDCARLIDV-NMKLKLGSGLVIGVP-I--P--REHAASGRVIESAI 179 (243)
Q Consensus 131 ~~~~r~d~~~e~A~~~~~-~~~l~l~~g~lvanP-i--P--~e~~~~~~~i~~~I 179 (243)
.+..+.+++++.+++.. ..+++--.. ||.|. + | .-...+.+.+++.+
T Consensus 60 -~~~D~~~~~~~~~~~~~~~~~~~~id~-li~~ag~~~~~~~~~~~~~~~~~~~~ 112 (254)
T PRK07478 60 -LAGDVRDEAYAKALVALAVERFGGLDI-AFNNAGTLGEMGPVAEMSLEGWRETL 112 (254)
T ss_pred -EEcCCCCHHHHHHHHHHHHHhcCCCCE-EEECCCCCCCCCChhhCCHHHHHHHH
Confidence 23446677777777764 233442233 44443 2 1 11234555555544
No 119
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=36.19 E-value=18 Score=26.47 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=44.1
Q ss_pred hhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCCCChHHHHHHH
Q 026121 100 RTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAI 179 (243)
Q Consensus 100 ~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~I 179 (243)
+.+|++ ..|+||++..+..++.||.....+- .+++++|++..+..- --+++..+++-
T Consensus 14 r~~E~~-a~G~~vi~~~~~~~~~~~~~~~~~~---~~~~~~el~~~i~~l-------------------l~~~~~~~~ia 70 (92)
T PF13524_consen 14 RIFEAM-ACGTPVISDDSPGLREIFEDGEHII---TYNDPEELAEKIEYL-------------------LENPEERRRIA 70 (92)
T ss_pred HHHHHH-HCCCeEEECChHHHHHHcCCCCeEE---EECCHHHHHHHHHHH-------------------HCCHHHHHHHH
Confidence 555555 4689999999999999986653221 233888988877642 12566777777
Q ss_pred HHHHHHHHH
Q 026121 180 QSALREARE 188 (243)
Q Consensus 180 ~~Al~ea~~ 188 (243)
++|.+...+
T Consensus 71 ~~a~~~v~~ 79 (92)
T PF13524_consen 71 KNARERVLK 79 (92)
T ss_pred HHHHHHHHH
Confidence 777666543
No 120
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=36.11 E-value=74 Score=24.46 Aligned_cols=77 Identities=23% Similarity=0.220 Sum_probs=49.7
Q ss_pred cCCCchhhHHHHHHHHHH-C-CCcEEEe-cccccccCC-Ccccccc-------ccchhhhcCCCeEEEecccccccchhh
Q 026121 32 TRGNGATTVSATMFFASM-V-GIPVFVT-GGIGGVHRH-GEHTMDI-------SSDLTELGRTPVAVVSAGIKSILDIPR 100 (243)
Q Consensus 32 ~~~~GaTTVaaTm~lA~~-a-GI~VFaT-GGIGGVHrg-ae~t~Di-------SaDL~eL~rtpV~VVcaG~KsILDi~~ 100 (243)
+|..|-||++..+..+-. . |.+|..- -=. +++ .-.=+|. ...+.+.+..=++|+.....|+-+..+
T Consensus 8 kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~---~~~~D~IIiDtpp~~~~~~~~~l~~aD~vlvvv~~~~~s~~~~~~ 84 (106)
T cd03111 8 KGGVGATTLAANLAVALAKEAGRRVLLVDLDL---QFGDDYVVVDLGRSLDEVSLAALDQADRVFLVTQQDLPSIRNAKR 84 (106)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEECCC---CCCCCEEEEeCCCCcCHHHHHHHHHcCeEEEEecCChHHHHHHHH
Confidence 678899998887765544 4 7776543 000 000 0001111 234555666668888899999999999
Q ss_pred hHhHhhhCCee
Q 026121 101 TLEYLETHGVC 111 (243)
Q Consensus 101 TLE~LET~GV~ 111 (243)
.+++|+..+.+
T Consensus 85 ~~~~l~~~~~~ 95 (106)
T cd03111 85 LLELLRVLDYS 95 (106)
T ss_pred HHHHHHHcCCC
Confidence 99999998865
No 121
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=36.06 E-value=2.6e+02 Score=23.42 Aligned_cols=84 Identities=20% Similarity=0.230 Sum_probs=42.5
Q ss_pred cEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCccc
Q 026121 53 PVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKV 132 (243)
Q Consensus 53 ~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~ 132 (243)
-+++|||-||+-+ .+..=|.+.+ ..||+....+--.....++.++.+|..+..+.
T Consensus 5 ~~lVtG~s~giG~------~~a~~l~~~G---~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 59 (246)
T PRK12938 5 IAYVTGGMGGIGT------SICQRLHKDG---FKVVAGCGPNSPRRVKWLEDQKALGFDFIASE---------------- 59 (246)
T ss_pred EEEEECCCChHHH------HHHHHHHHcC---CEEEEEcCCChHHHHHHHHHHHhcCCcEEEEE----------------
Confidence 4799999999844 3444444433 23333222222233445566666655443322
Q ss_pred CccCCCHHHHHHHHHH-HHhcCCCCeEEEEeC
Q 026121 133 PCRVDSPEDCARLIDV-NMKLKLGSGLVIGVP 163 (243)
Q Consensus 133 ~~r~d~~~e~A~~~~~-~~~l~l~~g~lvanP 163 (243)
..+.+.+++.+.+.. ...++ +--+||-|.
T Consensus 60 -~D~~~~~~~~~~~~~~~~~~~-~id~li~~a 89 (246)
T PRK12938 60 -GNVGDWDSTKAAFDKVKAEVG-EIDVLVNNA 89 (246)
T ss_pred -cCCCCHHHHHHHHHHHHHHhC-CCCEEEECC
Confidence 345677777776653 23333 223455554
No 122
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=35.99 E-value=2.7e+02 Score=24.74 Aligned_cols=75 Identities=20% Similarity=0.148 Sum_probs=37.4
Q ss_pred chhhHHHHHHHHHHCCCcEEEeccccccc-----CCCccccccccc-hhhhcCC--CeEEEecccccccchhhhHhHhhh
Q 026121 36 GATTVSATMFFASMVGIPVFVTGGIGGVH-----RHGEHTMDISSD-LTELGRT--PVAVVSAGIKSILDIPRTLEYLET 107 (243)
Q Consensus 36 GaTTVaaTm~lA~~aGI~VFaTGGIGGVH-----rgae~t~DiSaD-L~eL~rt--pV~VVcaG~KsILDi~~TLE~LET 107 (243)
|.-...+....++..+ +.|||+|.- +......+.... ..+|-+. -.+||+...-+ ....++.++.
T Consensus 16 g~~~~~g~~~a~~~~N----~~Ggi~G~~i~lv~~D~~~~~~~~~~~~~~li~~~~V~~iig~~~s~---~~~~~~~~~~ 88 (341)
T cd06341 16 FPGARAGADAAAGYAN----AAGGIAGRPIEYVWCDDQGDPASAAACARDLVEDDKVVAVVGGSSGA---GGSALPYLAG 88 (341)
T ss_pred cHHHHHHHHHHHHHHH----hcCCcCCceEEEEEecCCCChhHHHHHHHHHHHhcCceEEEeccccc---chhHHHHHhh
Confidence 4444555555555544 568888831 111111111111 1224433 34444443322 2344589999
Q ss_pred CCeeEEeecc
Q 026121 108 HGVCVAAYKT 117 (243)
Q Consensus 108 ~GV~V~gy~t 117 (243)
.+||++...+
T Consensus 89 ~~ip~v~~~~ 98 (341)
T cd06341 89 AGIPVIGGAG 98 (341)
T ss_pred cCCceecCCC
Confidence 9999998763
No 123
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=35.99 E-value=39 Score=25.58 Aligned_cols=45 Identities=27% Similarity=0.228 Sum_probs=32.4
Q ss_pred chhhhHhHhhhCCeeEEeeccCCCcceeecC-CCcccCccCCCHHH
Q 026121 97 DIPRTLEYLETHGVCVAAYKTNEFPAFFTET-SGSKVPCRVDSPED 141 (243)
Q Consensus 97 Di~~TLE~LET~GV~V~gy~td~fPaFy~~~-Sg~~~~~r~d~~~e 141 (243)
|+....+.|..+|++++....+....||.++ +|..+....+..++
T Consensus 69 dl~~~~~~l~~~G~~~~~~~~~~~~~~~f~DPdG~~ie~~~~~~~~ 114 (121)
T cd07244 69 DFASLKEKLRQAGVKEWKENTSEGDSFYFLDPDGHKLELHVGSLAS 114 (121)
T ss_pred HHHHHHHHHHHcCCcccCCCCCCccEEEEECCCCCEEEEEeCCHHH
Confidence 8999999999999999876544445555554 57777766665443
No 124
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=35.96 E-value=2.6e+02 Score=23.45 Aligned_cols=99 Identities=19% Similarity=0.235 Sum_probs=49.4
Q ss_pred cEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCccc
Q 026121 53 PVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKV 132 (243)
Q Consensus 53 ~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~ 132 (243)
.+++|||-||+-+ .+..-|.+.+- .|++++-... .....+..|+..|..+.. .
T Consensus 2 ~~lItG~sg~iG~------~la~~l~~~G~-~v~~~~r~~~---~~~~~~~~l~~~~~~~~~-----------------~ 54 (254)
T TIGR02415 2 VALVTGGAQGIGK------GIAERLAKDGF-AVAVADLNEE---TAKETAKEINQAGGKAVA-----------------Y 54 (254)
T ss_pred EEEEeCCCchHHH------HHHHHHHHCCC-EEEEEeCCHH---HHHHHHHHHHhcCCeEEE-----------------E
Confidence 3789999999844 45555655543 3444443221 122233444544433221 1
Q ss_pred CccCCCHHHHHHHHHHH-HhcCCCCeEEEEeC-CCcC---CCCChHHHHHHH
Q 026121 133 PCRVDSPEDCARLIDVN-MKLKLGSGLVIGVP-IPRE---HAASGRVIESAI 179 (243)
Q Consensus 133 ~~r~d~~~e~A~~~~~~-~~l~l~~g~lvanP-iP~e---~~~~~~~i~~~I 179 (243)
+..+.+++++.+++..- .+++ +-.+||-|. +... ...+.+.+++..
T Consensus 55 ~~Dl~~~~~i~~~~~~~~~~~~-~id~vi~~ag~~~~~~~~~~~~~~~~~~~ 105 (254)
T TIGR02415 55 KLDVSDKDQVFSAIDQAAEKFG-GFDVMVNNAGVAPITPILEITEEELKKVY 105 (254)
T ss_pred EcCCCCHHHHHHHHHHHHHHcC-CCCEEEECCCcCCCCCcccCCHHHHHHHH
Confidence 34456788888877643 3444 333444443 2211 134555554443
No 125
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=35.87 E-value=23 Score=31.59 Aligned_cols=121 Identities=24% Similarity=0.295 Sum_probs=66.5
Q ss_pred cEEEecccccccCCCccccccccchhh-hcCCCeEEEecccccccchhhhHhHhhhCCeeEE-eecc------CCCccee
Q 026121 53 PVFVTGGIGGVHRHGEHTMDISSDLTE-LGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVA-AYKT------NEFPAFF 124 (243)
Q Consensus 53 ~VFaTGGIGGVHrgae~t~DiSaDL~e-L~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~-gy~t------d~fPaFy 124 (243)
+++=++|.||... .||.||.=..= |+..-+-|+==|.+++=----|.++||..||++- .... +.=-+|+
T Consensus 2 ~~~D~~gTGGd~~---~t~niSt~~a~vlAa~G~~V~kHG~r~~~~~~Gs~dvLe~LGv~~~~~~~~~~~~l~~~g~~fl 78 (252)
T PF00591_consen 2 PVVDICGTGGDGD---KTFNISTAAAIVLAAAGVPVAKHGNRGVTSKSGSADVLEALGVPIDLSPEEAQAQLEETGIAFL 78 (252)
T ss_dssp TEEEEEESSCSSS---TBHHHHHHHHHHHHHTTSEEEEEEESGCTTSSSHHHHHHHSTB-TT--HHHHHHHHHHHSEEEE
T ss_pred CceEEecCCCCCC---CceehHHHHHHHHHccCCcEecccCCCccccccHHHHHHhcCCCcCCCHHHHHHHhhccCeEEe
Confidence 3556788888654 69999854433 4555666666677776666668899999999972 1110 1111233
Q ss_pred ecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeE----EEEeCCCcCCCCCh---HHHHHHHHHHHHH
Q 026121 125 TETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGL----VIGVPIPREHAASG---RVIESAIQSALRE 185 (243)
Q Consensus 125 ~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~----lvanPiP~e~~~~~---~~i~~~I~~Al~e 185 (243)
.... + .| ...+++..+++||+++-. =+.||...++.+-. ..+.+...+++++
T Consensus 79 ~~~~-~-~p-------~~~~l~~~R~~lg~rT~~N~l~pL~nP~~~~~~v~Gv~~~~~~~~~~~~~~~ 137 (252)
T PF00591_consen 79 FAPN-F-HP-------ALKRLAPVRRELGIRTVFNTLGPLLNPANAKHQVIGVFHPEYAELMAEALRD 137 (252)
T ss_dssp EHHH-H-SG-------GHHHHHHHHHHHTS--SHHHHGHHHHTT--SEEEEEHSCHHHHHHHHHHHCC
T ss_pred cchh-c-Cc-------chHHHHHHHHHcCCCCHHHhhhhhcCCcCCCcEEEEEeCHHHHHHHHHHHHh
Confidence 2211 1 11 245677788899986542 24678777776432 2333344444443
No 126
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=35.77 E-value=36 Score=30.42 Aligned_cols=54 Identities=28% Similarity=0.502 Sum_probs=41.7
Q ss_pred ccccCCCccccccccchhhhc-CCCeEEEecccc---cccchhhhHhHhhhCCeeEEee
Q 026121 61 GGVHRHGEHTMDISSDLTELG-RTPVAVVSAGIK---SILDIPRTLEYLETHGVCVAAY 115 (243)
Q Consensus 61 GGVHrgae~t~DiSaDL~eL~-rtpV~VVcaG~K---sILDi~~TLE~LET~GV~V~gy 115 (243)
|||-+-.- .-.-|-||.+|+ -+|++|+|-=.. ++++.+.-++|=+++|.|++..
T Consensus 135 gGvl~R~G-hTEaavdL~~lAGl~p~~vicEil~~dG~m~~~~~~~~fA~~~~l~~isi 192 (199)
T TIGR00506 135 GGVLTRGG-HTEASVDLAELAGLKPAGVICEMMNDDGTMARKPELMEYAKKHNLKLISI 192 (199)
T ss_pred CCCcCCCC-hHHHHHHHHHHcCCCceEEEEEEeCCCCCccCHHHHHHHHHHcCCcEEEH
Confidence 56644221 347899999999 469999995433 5999999999999999999864
No 127
>PRK09072 short chain dehydrogenase; Provisional
Probab=35.70 E-value=1.6e+02 Score=25.20 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=45.8
Q ss_pred CcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcc
Q 026121 52 IPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSK 131 (243)
Q Consensus 52 I~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~ 131 (243)
=.+.+|||-||+-+ .+...|.+-+- .|++++-..+..-++...+ + .+..+ -|
T Consensus 6 ~~vlItG~s~~iG~------~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~---------~~-------- 57 (263)
T PRK09072 6 KRVLLTGASGGIGQ------ALAEALAAAGA-RLLLVGRNAEKLEALAARL---P-YPGRH---------RW-------- 57 (263)
T ss_pred CEEEEECCCchHHH------HHHHHHHHCCC-EEEEEECCHHHHHHHHHHH---h-cCCce---------EE--------
Confidence 35899999999844 56666666653 4777765544332222221 1 11110 01
Q ss_pred cCccCCCHHHHHHHHHHHHhcCCCCeEEEE
Q 026121 132 VPCRVDSPEDCARLIDVNMKLKLGSGLVIG 161 (243)
Q Consensus 132 ~~~r~d~~~e~A~~~~~~~~l~l~~g~lva 161 (243)
.+..+.+++++.++++.-..++-..+++.+
T Consensus 58 ~~~D~~d~~~~~~~~~~~~~~~~id~lv~~ 87 (263)
T PRK09072 58 VVADLTSEAGREAVLARAREMGGINVLINN 87 (263)
T ss_pred EEccCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 234466788888887766555544554444
No 128
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=35.45 E-value=47 Score=34.02 Aligned_cols=51 Identities=27% Similarity=0.453 Sum_probs=38.7
Q ss_pred cCCCccccccccchhhhcCCCeEEEecccccccchh--hhHhHhhhCCeeEEeeccC
Q 026121 64 HRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIP--RTLEYLETHGVCVAAYKTN 118 (243)
Q Consensus 64 Hrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~--~TLE~LET~GV~V~gy~td 118 (243)
|.|...+ -|.++.+--+-.++|+|+|-+.=-.-| .|+|+|+.+|++| |+||
T Consensus 607 HHGS~~S--ss~~fl~~v~P~~aiiS~g~~N~yghP~~~vl~rl~~~g~~~--~~T~ 659 (662)
T TIGR00361 607 HHGSKTS--TSEELIQQVQPKVAIISAGRNNRWHHPHQKVLQRLQRHSIRV--LRTD 659 (662)
T ss_pred CCCCCCC--ChHHHHHhcCCCEEEEECCCCCCCCCChHHHHHHHHHCCCeE--EecC
Confidence 6665443 256777777888999999987766555 5999999999997 4554
No 129
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=35.28 E-value=2.7e+02 Score=23.27 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=43.4
Q ss_pred hhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCCCChHHHHHH
Q 026121 99 PRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESA 178 (243)
Q Consensus 99 ~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~ 178 (243)
+.+++.|+.+|..++.|.-+.. +|...+++++.+-+..+ +. ++.||+... .. +...--++
T Consensus 110 ~~~~~~l~~~G~~~v~w~~~~~------------D~~~~~~~~i~~~~~~~--~~-~g~Iil~Hd-~~----~~~~t~~~ 169 (191)
T TIGR02764 110 KAVLKAAESLGYTVVHWSVDSR------------DWKNPGVESIVDRVVKN--TK-PGDIILLHA-SD----SAKQTVKA 169 (191)
T ss_pred HHHHHHHHHcCCeEEEecCCCC------------ccCCCCHHHHHHHHHhc--CC-CCCEEEEeC-CC----CcHhHHHH
Confidence 6778888888888887763211 23334566666544332 21 455777775 11 12222346
Q ss_pred HHHHHHHHHHcCCC
Q 026121 179 IQSALREAREKNIT 192 (243)
Q Consensus 179 I~~Al~ea~~~gi~ 192 (243)
+.+.+...+++|.+
T Consensus 170 l~~~i~~l~~~Gy~ 183 (191)
T TIGR02764 170 LPTIIKKLKEKGYE 183 (191)
T ss_pred HHHHHHHHHHCCCE
Confidence 67777877887753
No 130
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=35.10 E-value=3.3e+02 Score=25.82 Aligned_cols=127 Identities=14% Similarity=0.121 Sum_probs=75.7
Q ss_pred CCHHHHHHHHhcCCCcc-----cccccchHHHHhc-CCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccc
Q 026121 3 LSTEELERLAKLGSKAQ-----KTARRDIAHVVAT-RGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSD 76 (243)
Q Consensus 3 Ls~~ele~la~~~~~~~-----K~SrRDl~~~~a~-~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaD 76 (243)
||.+++++|.+.+-+-. -.++.-++.+... ..+.--..=.|+..|..+||+.+-+|+|=|. |.
T Consensus 160 lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl--~e--------- 228 (366)
T TIGR02351 160 LNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGL--DD--------- 228 (366)
T ss_pred CCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeC--ch---------
Confidence 68899999977542211 1122222322211 1223334456899999999998888999887 21
Q ss_pred hhhhcCCCeEEEecccccccchhhhHhHhhh------CCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHH
Q 026121 77 LTELGRTPVAVVSAGIKSILDIPRTLEYLET------HGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNM 150 (243)
Q Consensus 77 L~eL~rtpV~VVcaG~KsILDi~~TLE~LET------~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~ 150 (243)
.-...++....|.||+- ..||+.-+..- |+ ++.-++.+ ++.++.+++..-+
T Consensus 229 --------------~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~--~g------~~~~~~~l-~~~~~~~~i~~~R 285 (366)
T TIGR02351 229 --------------WRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPC--TN------GLKPKVIV-TDRELVQIICAYR 285 (366)
T ss_pred --------------hHHHHHHHHHHHHHHHHHcCCCCccccccccccC--CC------CCCCCCcC-CHHHHHHHHHHHH
Confidence 12356777889999988 57887755532 11 22222333 4788888888766
Q ss_pred hcCCCCeEEEEeC
Q 026121 151 KLKLGSGLVIGVP 163 (243)
Q Consensus 151 ~l~l~~g~lvanP 163 (243)
-+-=..++.++-=
T Consensus 286 ~~~P~~~i~~s~g 298 (366)
T TIGR02351 286 LFDPFVEISLSTR 298 (366)
T ss_pred HhCcccccEEecC
Confidence 6543455555543
No 131
>PRK10494 hypothetical protein; Provisional
Probab=34.90 E-value=82 Score=28.71 Aligned_cols=77 Identities=14% Similarity=0.363 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHC-CCcEEEecccccccCCCc--------cccccccc----------hh--------hhcCCCeEEEecc
Q 026121 39 TVSATMFFASMV-GIPVFVTGGIGGVHRHGE--------HTMDISSD----------LT--------ELGRTPVAVVSAG 91 (243)
Q Consensus 39 TVaaTm~lA~~a-GI~VFaTGGIGGVHrgae--------~t~DiSaD----------L~--------eL~rtpV~VVcaG 91 (243)
-+-.++.+.+.- +-++.+|||-|.-+.-.| ..+-|++| =. .++..++++|++.
T Consensus 108 Rl~~a~~L~r~~~~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~~~~~~~~iiLVTsa 187 (259)
T PRK10494 108 RLTEGIRLWRANPGAKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLDLPKDTEEEAAAVKQAIGDAPFLLVTSA 187 (259)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHHHHhCCCCEEEECCH
Confidence 455667777773 678999999874331100 01223222 11 2556679998876
Q ss_pred cccccchhhhHhHhhhCCeeEEeeccCC
Q 026121 92 IKSILDIPRTLEYLETHGVCVAAYKTNE 119 (243)
Q Consensus 92 ~KsILDi~~TLE~LET~GV~V~gy~td~ 119 (243)
.-++|.+.+++.+|+.|+-+-+|.
T Consensus 188 ----~Hm~RA~~~f~~~Gl~v~p~Ptd~ 211 (259)
T PRK10494 188 ----SHLPRAMIFFQQEGLNPLPAPANQ 211 (259)
T ss_pred ----HHHHHHHHHHHHcCCceeecCCcc
Confidence 478999999999999999887763
No 132
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=34.84 E-value=1.6e+02 Score=25.47 Aligned_cols=86 Identities=19% Similarity=0.123 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccch---hhhHhHhhhCCeeEEee
Q 026121 39 TVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDI---PRTLEYLETHGVCVAAY 115 (243)
Q Consensus 39 TVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi---~~TLE~LET~GV~V~gy 115 (243)
++.-.+.+|..+|....-|...+ .++.-..+.+..+.|| |++|--.+-|. ...++.+...|+-=+-+
T Consensus 144 ~i~~~~~~a~~~GaD~Ik~~~~~--------~~~~~~~i~~~~~~pv--v~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~v 213 (235)
T cd00958 144 LIAYAARIGAELGADIVKTKYTG--------DAESFKEVVEGCPVPV--VIAGGPKKDSEEEFLKMVYDAMEAGAAGVAV 213 (235)
T ss_pred HHHHHHHHHHHHCCCEEEecCCC--------CHHHHHHHHhcCCCCE--EEeCCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 34444555556666666664322 1233334444445674 44443333343 34455566677776666
Q ss_pred ccCCCcceeecCCCcccCccCCCHHHHHHHHHH
Q 026121 116 KTNEFPAFFTETSGSKVPCRVDSPEDCARLIDV 148 (243)
Q Consensus 116 ~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~ 148 (243)
++.-| .-++|++.++-++.
T Consensus 214 g~~i~--------------~~~dp~~~~~~~~~ 232 (235)
T cd00958 214 GRNIF--------------QRPDPVAMLRAISA 232 (235)
T ss_pred chhhh--------------cCCCHHHHHHHHHH
Confidence 64433 33357776665543
No 133
>PRK06101 short chain dehydrogenase; Provisional
Probab=34.75 E-value=1.8e+02 Score=24.59 Aligned_cols=13 Identities=31% Similarity=0.749 Sum_probs=10.4
Q ss_pred cEEEecccccccC
Q 026121 53 PVFVTGGIGGVHR 65 (243)
Q Consensus 53 ~VFaTGGIGGVHr 65 (243)
.+++|||-||+-+
T Consensus 3 ~vlItGas~giG~ 15 (240)
T PRK06101 3 AVLITGATSGIGK 15 (240)
T ss_pred EEEEEcCCcHHHH
Confidence 3789999999843
No 134
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=34.45 E-value=2.3e+02 Score=28.21 Aligned_cols=17 Identities=35% Similarity=0.337 Sum_probs=11.6
Q ss_pred ChHHHHHHHHHHHHHHH
Q 026121 171 SGRVIESAIQSALREAR 187 (243)
Q Consensus 171 ~~~~i~~~I~~Al~ea~ 187 (243)
+.++++++++++..++.
T Consensus 173 ~~~eL~~a~~~~~~~a~ 189 (499)
T PRK08654 173 SEEELEDAIESTQSIAQ 189 (499)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 56677777777766654
No 135
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=34.02 E-value=27 Score=35.64 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=24.9
Q ss_pred CCcEEEecccccccCCCccccccccchhhhc
Q 026121 51 GIPVFVTGGIGGVHRHGEHTMDISSDLTELG 81 (243)
Q Consensus 51 GI~VFaTGGIGGVHrgae~t~DiSaDL~eL~ 81 (243)
.--|.||||+||++.--.+.--.+.|-..|+
T Consensus 186 ~~vVLATGG~g~ly~~TTNp~~~~GdGIamA 216 (518)
T COG0029 186 KAVVLATGGLGGLYAYTTNPKGSTGDGIAMA 216 (518)
T ss_pred CeEEEecCCCcccccccCCCccccccHHHHH
Confidence 4447899999999997777777788888776
No 136
>PRK07069 short chain dehydrogenase; Validated
Probab=33.43 E-value=2.3e+02 Score=23.66 Aligned_cols=30 Identities=33% Similarity=0.624 Sum_probs=18.0
Q ss_pred cEEEecccccccCCCccccccccchhhhcCCCeEEEe
Q 026121 53 PVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVS 89 (243)
Q Consensus 53 ~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVc 89 (243)
++++|||-||+-+ .+...|.+-+ ..|.+++
T Consensus 1 ~ilVtG~~~~iG~------~~a~~l~~~G-~~v~~~~ 30 (251)
T PRK07069 1 RAFITGAAGGLGR------AIARRMAEQG-AKVFLTD 30 (251)
T ss_pred CEEEECCCChHHH------HHHHHHHHCC-CEEEEEe
Confidence 4799999999833 3555555443 2344443
No 137
>CHL00067 rps2 ribosomal protein S2
Probab=33.20 E-value=2.4e+02 Score=25.41 Aligned_cols=26 Identities=35% Similarity=0.298 Sum_probs=20.8
Q ss_pred CCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCC
Q 026121 153 KLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNI 191 (243)
Q Consensus 153 ~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~gi 191 (243)
.+|.-++|.+|.-+. +|++||...||
T Consensus 160 ~~P~~iiv~d~~~~~-------------~ai~Ea~~l~I 185 (230)
T CHL00067 160 KLPDIVIIIDQQEEY-------------TALRECRKLGI 185 (230)
T ss_pred cCCCEEEEeCCcccH-------------HHHHHHHHcCC
Confidence 478899999996542 58999999987
No 138
>PRK09071 hypothetical protein; Validated
Probab=33.17 E-value=83 Score=29.83 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHhc-CCCcccccc-cchHHHHhcCCCchhhH-HHHHHHHHHCCCcEEEecccccccCCCcccccc-ccch
Q 026121 2 RLSTEELERLAKL-GSKAQKTAR-RDIAHVVATRGNGATTV-SATMFFASMVGIPVFVTGGIGGVHRHGEHTMDI-SSDL 77 (243)
Q Consensus 2 GLs~~ele~la~~-~~~~~K~Sr-RDl~~~~a~~~~GaTTV-aaTm~lA~~aGI~VFaTGGIGGVHrgae~t~Di-SaDL 77 (243)
|.|.+||.-+++. .+...++.. .|+...+-.|.++..|+ -.+.+++..+|+||.-=|. |+.... =. |+|+
T Consensus 54 geT~eEi~g~~~a~r~~~~~~~~~~~iD~~~gtG~d~~~~~~~~~a~vlA~~G~~V~kHGn-----r~~ssk-~g~saDv 127 (323)
T PRK09071 54 EETAEELAGFVEAIRERLQAPPLAVDLDWPSYAGKRRHLPWYLLAAKLLAQNGYRVLLHGG-----GGHTAG-RLYTEQL 127 (323)
T ss_pred CCCHHHHHHHHHHHHHhcccCCCCCceecCCcCCCCCCcccHHHHHHHHHHCCCeEEEECC-----CCCCCC-cccHHHH
Confidence 6788998888762 122333321 23332223455444444 2556777888999999863 222111 23 7777
Q ss_pred hhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCccee
Q 026121 78 TELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFF 124 (243)
Q Consensus 78 ~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy 124 (243)
-|- -|++--++.....+.||..|+.-+ |..+.+|++.
T Consensus 128 Lea---------LGv~~~~~~~~~~~~l~~~g~~fl-~ap~~hPa~~ 164 (323)
T PRK09071 128 LEA---------LGIPIARSWQEAEQALEEHNIAYL-PLEDFAPQLQ 164 (323)
T ss_pred HHH---------CCCCCCCCHHHHHHHHHhcCeEEe-ehHHhChHHH
Confidence 763 466666778888889999888755 3445566554
No 139
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=33.09 E-value=2e+02 Score=27.49 Aligned_cols=60 Identities=20% Similarity=0.068 Sum_probs=38.9
Q ss_pred CCCChHHHHHHHHH---HHHHHHHcCCCCccCC------------hHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHH
Q 026121 168 HAASGRVIESAIQS---ALREAREKNITGNAET------------PFLLARVNELTGGLSLASNIALVKNNALIGAKISV 232 (243)
Q Consensus 168 ~~~~~~~i~~~I~~---Al~ea~~~gi~Gk~vT------------PflL~~i~elT~G~Sl~aNiaLv~nNA~laa~IA~ 232 (243)
.+|+.++|+++|++ |-+.|++.|..|=+++ |+.++|-+|. |-|+ +|.+|+.-+|-.
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~y--GGsl-------enR~Rf~~eii~ 208 (370)
T cd02929 138 REMDKDDIKRVRRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEY--GGSL-------ENRARFWRETLE 208 (370)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCcccc--CCCh-------HhhhHHHHHHHH
Confidence 46899999988875 4556667888887775 4444555542 3365 566666666666
Q ss_pred HHHH
Q 026121 233 ALAQ 236 (243)
Q Consensus 233 al~~ 236 (243)
+..+
T Consensus 209 aIr~ 212 (370)
T cd02929 209 DTKD 212 (370)
T ss_pred HHHH
Confidence 5544
No 140
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=32.86 E-value=3e+02 Score=23.09 Aligned_cols=87 Identities=22% Similarity=0.206 Sum_probs=42.8
Q ss_pred CCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCC
Q 026121 50 VGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSG 129 (243)
Q Consensus 50 aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg 129 (243)
.|=.+++|||-||+-+ .+...|.+.+- .|++++. -.. -....+.+.++..|..+.
T Consensus 3 ~~~~vlItGa~g~iG~------~~a~~l~~~g~-~v~~~~~-r~~-~~~~~~~~~~~~~~~~~~---------------- 57 (250)
T PRK08063 3 SGKVALVTGSSRGIGK------AIALRLAEEGY-DIAVNYA-RSR-KAAEETAEEIEALGRKAL---------------- 57 (250)
T ss_pred CCCEEEEeCCCchHHH------HHHHHHHHCCC-EEEEEcC-CCH-HHHHHHHHHHHhcCCeEE----------------
Confidence 4557999999999843 35555554432 2322211 100 012234444444332211
Q ss_pred cccCccCCCHHHHHHHHHHHHh-cCCCCeEEEEeC
Q 026121 130 SKVPCRVDSPEDCARLIDVNMK-LKLGSGLVIGVP 163 (243)
Q Consensus 130 ~~~~~r~d~~~e~A~~~~~~~~-l~l~~g~lvanP 163 (243)
..+.-+.+++++.+++..-.. ++ +--+||.|.
T Consensus 58 -~~~~D~~~~~~~~~~~~~~~~~~~-~id~vi~~a 90 (250)
T PRK08063 58 -AVKANVGDVEKIKEMFAQIDEEFG-RLDVFVNNA 90 (250)
T ss_pred -EEEcCCCCHHHHHHHHHHHHHHcC-CCCEEEECC
Confidence 123446678888888775443 33 223455544
No 141
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=32.54 E-value=1.9e+02 Score=25.84 Aligned_cols=115 Identities=14% Similarity=0.091 Sum_probs=66.2
Q ss_pred HHHHHHHHHHCCCcEEEecccc-----cccCCCccccccccchhhhcCCC-eEEEecccccccchhhhHhHhhhCCeeEE
Q 026121 40 VSATMFFASMVGIPVFVTGGIG-----GVHRHGEHTMDISSDLTELGRTP-VAVVSAGIKSILDIPRTLEYLETHGVCVA 113 (243)
Q Consensus 40 VaaTm~lA~~aGI~VFaTGGIG-----GVHrgae~t~DiSaDL~eL~rtp-V~VVcaG~KsILDi~~TLE~LET~GV~V~ 113 (243)
||+-..+|.+.|++.-.-++-- .+| |-. ...-..+|..+.+.+ .+|+=-+.+ .+++..+.|...|.+
T Consensus 117 ISS~~aaaA~lg~pl~~~~~~~~~~v~s~h-G~~-~~~~~~~l~~~~~~~~t~vi~~~~~---~~~~i~~~L~~~g~~-- 189 (257)
T PRK15473 117 VSSFLGAAAELGVEYTVPEVSQSLIITRME-GRT-PVPAREQLESFASHQTSMAIFLSVQ---RIHRVAERLIAGGYP-- 189 (257)
T ss_pred hhHHHHHHHHcCCCcccccccccEEEEeec-CCC-CCCchhhHHHHhcCCCeEEEECCch---hHHHHHHHHHHcCCC--
Confidence 5666777888888752111100 112 211 111123678888766 333333444 478889999887753
Q ss_pred eeccCCCcceeecCCCcccCccC-CCHHHHHHHHHHHHhcCCCCeEEEEeCCCc
Q 026121 114 AYKTNEFPAFFTETSGSKVPCRV-DSPEDCARLIDVNMKLKLGSGLVIGVPIPR 166 (243)
Q Consensus 114 gy~td~fPaFy~~~Sg~~~~~r~-d~~~e~A~~~~~~~~l~l~~g~lvanPiP~ 166 (243)
++.|.++.+.-+.+-.-.+ .++++++..+... .+.-+.=++|.+.+-.
T Consensus 190 ----~~~~v~v~e~l~~~~E~i~~~tl~~l~~~~~~~-~~~~~~~ivvG~~~~~ 238 (257)
T PRK15473 190 ----ATTPVAVIYKATWPESQTVRGTLADIAEKVRDA-GIRKTALILVGNFLGE 238 (257)
T ss_pred ----CCCeEEEEEECCCCCcEEEEEEHHHHHHHHHhc-CCCCCEEEEEchhccC
Confidence 4667778777776665433 4588888866554 3445566666665543
No 142
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=32.50 E-value=42 Score=25.58 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=46.5
Q ss_pred HHHHHHHHCCCcEEEecccccccC------CCcccccccc-----chhhhcC---CCeEEEecccccccchhhhHhHhhh
Q 026121 42 ATMFFASMVGIPVFVTGGIGGVHR------HGEHTMDISS-----DLTELGR---TPVAVVSAGIKSILDIPRTLEYLET 107 (243)
Q Consensus 42 aTm~lA~~aGI~VFaTGGIGGVHr------gae~t~DiSa-----DL~eL~r---tpV~VVcaG~KsILDi~~TLE~LET 107 (243)
.+..+|+..|.+|++|..--. ++ |+...+|.+. .+.++.. ..+++-|+|.... +...++.|.-
T Consensus 5 ~a~q~ak~~G~~vi~~~~~~~-k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~--~~~~~~~l~~ 81 (130)
T PF00107_consen 5 MAIQLAKAMGAKVIATDRSEE-KLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDT--LQEAIKLLRP 81 (130)
T ss_dssp HHHHHHHHTTSEEEEEESSHH-HHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHH--HHHHHHHEEE
T ss_pred HHHHHHHHcCCEEEEEECCHH-HHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHH--HHHHHHHhcc
Confidence 457789999999999986321 11 5555555544 4556643 5688899995553 5667788888
Q ss_pred CCeeEE
Q 026121 108 HGVCVA 113 (243)
Q Consensus 108 ~GV~V~ 113 (243)
.|.-|+
T Consensus 82 ~G~~v~ 87 (130)
T PF00107_consen 82 GGRIVV 87 (130)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 876543
No 143
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=32.40 E-value=2e+02 Score=24.16 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=41.1
Q ss_pred hhhhHhHhhhCCeeEEeeccC----CCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCCCChH
Q 026121 98 IPRTLEYLETHGVCVAAYKTN----EFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGR 173 (243)
Q Consensus 98 i~~TLE~LET~GV~V~gy~td----~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~ 173 (243)
....|+.+..+||||+.+.++ .-+.+|...+. ...-..+|+.+..+. +-...+++....|.- . ...
T Consensus 69 ~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~------~~~G~~~a~~l~~~~--~~~~~v~~~~~~~~~-~-~~~ 138 (257)
T PF13407_consen 69 LAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDN------YEAGKLAAEYLAEKL--GAKGKVLILSGSPGN-P-NTQ 138 (257)
T ss_dssp THHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-H------HHHHHHHHHHHHHHH--TTTEEEEEEESSTTS-H-HHH
T ss_pred HHHHHHHHhhcCceEEEEeccccccccceeeeeccH------HHHHHHHHHHHHHHh--ccCceEEeccCCCCc-h-HHH
Confidence 347789999999999999876 11122211111 111234444444433 333667766666652 1 222
Q ss_pred HHHHHHHHHHHH
Q 026121 174 VIESAIQSALRE 185 (243)
Q Consensus 174 ~i~~~I~~Al~e 185 (243)
.-.+.+.+++++
T Consensus 139 ~r~~g~~~~l~~ 150 (257)
T PF13407_consen 139 ERLEGFRDALKE 150 (257)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 334455666666
No 144
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=32.26 E-value=2.9e+02 Score=26.51 Aligned_cols=145 Identities=12% Similarity=0.098 Sum_probs=73.8
Q ss_pred CchhhHHHHHHHHHHCCCcEEEeccccc---c-cCCCccccccc--------cc---hhhhcC-CCeEEEecccccccch
Q 026121 35 NGATTVSATMFFASMVGIPVFVTGGIGG---V-HRHGEHTMDIS--------SD---LTELGR-TPVAVVSAGIKSILDI 98 (243)
Q Consensus 35 ~GaTTVaaTm~lA~~aGI~VFaTGGIGG---V-Hrgae~t~DiS--------aD---L~eL~r-tpV~VVcaG~KsILDi 98 (243)
++|...--.+..|+..|++|++..--.. . |+-+.+.+.+. -| |.++++ ..+-+|..|..-+-+-
T Consensus 9 g~g~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~pg~g~~se~ 88 (449)
T TIGR00514 9 NRGEIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHPGYGFLSEN 88 (449)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEeCCCccccC
Confidence 3444444556778888888888642110 1 11233333331 12 444432 3344444444333344
Q ss_pred hhhHhHhhhCCeeEEeecc-------C--CCcceeecCCCcccC-c---cCCCHHHHHHHHHHHHhcCCCCeEEEEeCCC
Q 026121 99 PRTLEYLETHGVCVAAYKT-------N--EFPAFFTETSGSKVP-C---RVDSPEDCARLIDVNMKLKLGSGLVIGVPIP 165 (243)
Q Consensus 99 ~~TLE~LET~GV~V~gy~t-------d--~fPaFy~~~Sg~~~~-~---r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP 165 (243)
+...+.+|..|+|++|-.. | .+-.| ..+-|++.| + .+++.+++.+... .+|.| +|.-|.-
T Consensus 89 ~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~-l~~~gip~pp~~~~~~~~~~e~~~~~~---~ig~P---vvvKP~~ 161 (449)
T TIGR00514 89 ANFAEQCERSGFTFIGPSAESIRLMGDKVSAIET-MKKAGVPCVPGSDGLVEDEEENVRIAK---RIGYP---VIIKATA 161 (449)
T ss_pred HHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHH-HHHCCCCCCCCcccCcCCHHHHHHHHH---HhCCC---EEEEeCC
Confidence 4556778888888776432 1 12222 245577774 3 3567777655443 34433 3444433
Q ss_pred cCC------CCChHHHHHHHHHHHHHH
Q 026121 166 REH------AASGRVIESAIQSALREA 186 (243)
Q Consensus 166 ~e~------~~~~~~i~~~I~~Al~ea 186 (243)
..- .-+.++++.+++.+.+++
T Consensus 162 g~gs~Gv~~v~~~~el~~~~~~~~~~~ 188 (449)
T TIGR00514 162 GGGGRGMRVVREPDELVKSISMTRAEA 188 (449)
T ss_pred CCCCCccEEECCHHHHHHHHHHHHHHH
Confidence 221 136788888888777655
No 145
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=32.10 E-value=1.7e+02 Score=24.62 Aligned_cols=70 Identities=19% Similarity=0.244 Sum_probs=45.9
Q ss_pred hhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHH-----hcCCC-CeEEEE--------------eCCC
Q 026121 106 ETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNM-----KLKLG-SGLVIG--------------VPIP 165 (243)
Q Consensus 106 ET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~-----~l~l~-~g~lva--------------nPiP 165 (243)
+...+-++||+.. ++.|++- ..+.+.+.+++.++.-+ .+|.+ ..+.++ .++|
T Consensus 20 ~~~~~~i~g~~~~-------~s~gi~~-G~I~d~~~~~~~I~~ai~~ae~~~~~~i~~V~v~i~g~~v~~~~~~~~i~i~ 91 (187)
T smart00842 20 EDGEINVIGVGEV-------PSRGIRK-GVIVDIEAAARAIREAVEEAERMAGVKIDSVYVGISGRHLKSVNVSGVVAIP 91 (187)
T ss_pred CCCCEEEEEEEEe-------cCCCccC-cEEECHHHHHHHHHHHHHHHHHHhCCcccEEEEEEcCCceEEEeeEEEEECC
Confidence 3456889999832 5666654 67888999998887432 23544 334555 3466
Q ss_pred cCCCCChHHHHHHHHHHHH
Q 026121 166 REHAASGRVIESAIQSALR 184 (243)
Q Consensus 166 ~e~~~~~~~i~~~I~~Al~ 184 (243)
+..++.++|+.++++|..
T Consensus 92 -~~~i~~~di~~~~~~a~~ 109 (187)
T smart00842 92 -DKEITQEDIDRVLEAAKA 109 (187)
T ss_pred -CCEECHHHHHHHHHHhhc
Confidence 346899999988766654
No 146
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=31.93 E-value=2.2e+02 Score=24.58 Aligned_cols=84 Identities=21% Similarity=0.271 Sum_probs=53.0
Q ss_pred ccccchhhhHhHhhhC-----------C-eeEEeeccC----------CCcceeecCCCcccCccCCCHHHHHHHHHHHH
Q 026121 93 KSILDIPRTLEYLETH-----------G-VCVAAYKTN----------EFPAFFTETSGSKVPCRVDSPEDCARLIDVNM 150 (243)
Q Consensus 93 KsILDi~~TLE~LET~-----------G-V~V~gy~td----------~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~ 150 (243)
..|+|+.+|+++|+.. | |.+||-+.. .+-.||... -..|..+....++-..+..-.
T Consensus 30 ~~Iidl~~T~~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~~~~~i~~--rw~~G~LTN~~~~~~~~~~~~ 107 (193)
T cd01425 30 IHIIDLEKTLEKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTGSFYVNG--RWLGGTLTNWKTIRKSIKRLK 107 (193)
T ss_pred eEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCeeecC--eecCCcCCCHHHHHHHHHHHH
Confidence 4799999999998753 3 566665521 122333322 256667777776655444322
Q ss_pred h----------------cCCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCC
Q 026121 151 K----------------LKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNI 191 (243)
Q Consensus 151 ~----------------l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~gi 191 (243)
. ..+|.-++|.+|..+ .+|++||...||
T Consensus 108 ~~~~~~~~k~~~g~~~~~~~Pdlviv~~~~~~-------------~~ai~Ea~~l~I 151 (193)
T cd01425 108 KLEKEKLEKNLGGIKDMFRLPDLVIVLDPRKE-------------HQAIREASKLGI 151 (193)
T ss_pred HHHHHHHHHhcccccccccCCCEEEEeCCccc-------------hHHHHHHHHcCC
Confidence 2 257889999998332 248889998887
No 147
>TIGR03728 glyco_access_1 glycosyltransferase, SP_1767 family. Members of this protein family are putative glycosyltransferases. Some members are found close to genes for the accessory secretory (SecA2) system, and are suggested by Partial Phylogenetic Profiling to correlate with SecA2 systems. Glycosylation, therefore, may occur in the cytosol prior to secretion.
Probab=31.91 E-value=1.7e+02 Score=27.52 Aligned_cols=64 Identities=20% Similarity=0.348 Sum_probs=47.6
Q ss_pred cchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCC
Q 026121 96 LDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPI 164 (243)
Q Consensus 96 LDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPi 164 (243)
.++..||.++-..+..|+=||..||---. |...||.-.+++-+.++-+. -..+-....||+.|=
T Consensus 2 ks~~ETl~~I~~~~~Sv~RFGDGE~~li~----g~~I~fQ~y~~~La~rLkei-L~~~~~~n~lVclpd 65 (265)
T TIGR03728 2 KSIDETLDYIIKNNCSVVRFGDGEIDLIA----GESIGYQSYDPELAKRLKEI-LGNESDENLLVCLPD 65 (265)
T ss_pred CCHHHHHHHHHHCCCeEEEecCceeeeec----CCCCCCCCCCHHHHHHHHHH-HhcCCCCCeEEeCCc
Confidence 46789999999999999999998887652 56688888888655554332 222456678999885
No 148
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=31.87 E-value=1e+02 Score=26.96 Aligned_cols=92 Identities=11% Similarity=0.111 Sum_probs=51.0
Q ss_pred chhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCC----cCCCCCh
Q 026121 97 DIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIP----REHAASG 172 (243)
Q Consensus 97 Di~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP----~e~~~~~ 172 (243)
++..-.+.|+..|+.|.++....+..| .-.+ ...+.|-+..+..-++++....||.+. +.+ .+.+ .......
T Consensus 53 ~~~~l~~~l~~~Gl~i~~~~~~~~~~~-~~~~-~d~~~r~~~~~~~~~~i~~a~~lG~~~-v~~-~~~~~~~~~~~~~~~ 128 (284)
T PRK13210 53 ERLSLVKAIYETGVRIPSMCLSGHRRF-PFGS-RDPATRERALEIMKKAIRLAQDLGIRT-IQL-AGYDVYYEEKSEETR 128 (284)
T ss_pred HHHHHHHHHHHcCCCceEEecccccCc-CCCC-CCHHHHHHHHHHHHHHHHHHHHhCCCE-EEE-CCcccccccccHHHH
Confidence 355566799999999998854321111 0000 011112233456678888888888654 333 2211 1111122
Q ss_pred HHHHHHHHHHHHHHHHcCCC
Q 026121 173 RVIESAIQSALREAREKNIT 192 (243)
Q Consensus 173 ~~i~~~I~~Al~ea~~~gi~ 192 (243)
+.+-+.+++....|++.||+
T Consensus 129 ~~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 129 QRFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred HHHHHHHHHHHHHHHHhCCE
Confidence 44445677788889999994
No 149
>PRK09989 hypothetical protein; Provisional
Probab=31.81 E-value=2.3e+02 Score=24.81 Aligned_cols=91 Identities=10% Similarity=0.112 Sum_probs=48.9
Q ss_pred chhhhHhHhhhCCeeEEeeccC--CCc-ceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEEe-CCCcCCCCCh
Q 026121 97 DIPRTLEYLETHGVCVAAYKTN--EFP-AFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGV-PIPREHAASG 172 (243)
Q Consensus 97 Di~~TLE~LET~GV~V~gy~td--~fP-aFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvan-PiP~e~~~~~ 172 (243)
+.....+.|+..|+.|.++++. .++ +-|...+ ..+.+-+..+.+.+.++....||-+ -+.+.. -+|. ..+.
T Consensus 41 ~~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~i~~A~~lg~~-~v~v~~g~~~~--~~~~ 115 (258)
T PRK09989 41 STLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSA--LPGREHEARADIDLALEYALALNCE-QVHVMAGVVPA--GEDA 115 (258)
T ss_pred CHHHHHHHHHHcCCcEEEeccCCCccCCCCCcccC--CCccHHHHHHHHHHHHHHHHHhCcC-EEEECccCCCC--CCCH
Confidence 4567778899999999988753 121 1110000 0011111124466777777888755 222222 2332 2232
Q ss_pred H----HHHHHHHHHHHHHHHcCCC
Q 026121 173 R----VIESAIQSALREAREKNIT 192 (243)
Q Consensus 173 ~----~i~~~I~~Al~ea~~~gi~ 192 (243)
+ .+-+.+++....|++.|++
T Consensus 116 ~~~~~~~~~~l~~l~~~a~~~gv~ 139 (258)
T PRK09989 116 ERYRAVFIDNLRYAADRFAPHGKR 139 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCE
Confidence 2 2445666777788888885
No 150
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=31.60 E-value=1.6e+02 Score=24.82 Aligned_cols=96 Identities=19% Similarity=0.270 Sum_probs=61.5
Q ss_pred ccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccch
Q 026121 19 QKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDI 98 (243)
Q Consensus 19 ~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi 98 (243)
.+.+|+- ..-+....+|..-+-..+..+..-|.+||.-||-=++ +
T Consensus 17 ~~~~~~~-g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~~~~----------------------------------~ 61 (172)
T PF03808_consen 17 VWAARLL-GRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGSEEV----------------------------------L 61 (172)
T ss_pred HHHHHHc-CCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCCHHH----------------------------------H
Confidence 3444433 3333356778888888888888888899988865544 3
Q ss_pred hhhHhHhhhC--CeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcC
Q 026121 99 PRTLEYLETH--GVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE 167 (243)
Q Consensus 99 ~~TLE~LET~--GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e 167 (243)
.+..++|..+ |+.++|+....| +++|..+++..=.+.+ +.=++++.+.|..
T Consensus 62 ~~~~~~l~~~yP~l~ivg~~~g~f-----------------~~~~~~~i~~~I~~~~-pdiv~vglG~PkQ 114 (172)
T PF03808_consen 62 EKAAANLRRRYPGLRIVGYHHGYF-----------------DEEEEEAIINRINASG-PDIVFVGLGAPKQ 114 (172)
T ss_pred HHHHHHHHHHCCCeEEEEecCCCC-----------------ChhhHHHHHHHHHHcC-CCEEEEECCCCHH
Confidence 3556788887 999999864333 3334444444333333 5668888888874
No 151
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=31.59 E-value=1.8e+02 Score=25.49 Aligned_cols=85 Identities=20% Similarity=0.237 Sum_probs=54.4
Q ss_pred cccc-hhhhHhHhhhCCeeEEeeccCCCcceeecCCCc-ccCccCCCHHHHHHHHHHHH-hcC--------CCCeEEEEe
Q 026121 94 SILD-IPRTLEYLETHGVCVAAYKTNEFPAFFTETSGS-KVPCRVDSPEDCARLIDVNM-KLK--------LGSGLVIGV 162 (243)
Q Consensus 94 sILD-i~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~-~~~~r~d~~~e~A~~~~~~~-~l~--------l~~g~lvan 162 (243)
++=| ++..++.+...++.++|++ |+.- |+. ....-....+.+.+++..-. ++| ++||+
T Consensus 138 ~~~~~~~~~l~~~~~~~l~l~GlH------~H~g-S~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~idiGGG~---- 206 (251)
T PF02784_consen 138 DIEEEAEEALERAKELGLRLVGLH------FHVG-SQILDAEAFRQAIERLLDLAEELKEELGFEDLEFIDIGGGF---- 206 (251)
T ss_dssp EGGGHHHHHHHHHHHTTEEEEEEE------E-HC-SSBSSCHHHHHHHHHHHHHHHHHHHHTTTTT-SEEEEESSB----
T ss_pred ChHHHHHHHHHhhccceEEEEEee------eeec-cCCcchHHHHHHHHHHHHHHhhhccccccccccEEEeeCCC----
Confidence 3445 7888999999999999997 5543 333 33222334445555555433 444 44553
Q ss_pred CCCcCCCCChHHHHHHHHHHHHHHHHc
Q 026121 163 PIPREHAASGRVIESAIQSALREAREK 189 (243)
Q Consensus 163 PiP~e~~~~~~~i~~~I~~Al~ea~~~ 189 (243)
|+|-....+.+.+...|.+++++....
T Consensus 207 ~~~y~~~~~~~~~~~~i~~~~~~~~~~ 233 (251)
T PF02784_consen 207 GVPYDDEYDLEEYAEVIREALKEYFEE 233 (251)
T ss_dssp -SSSSSSSCHHHHHHHHHHHHHHHHCH
T ss_pred CCCCcccccchhHHHHHHHHHHHHHhc
Confidence 555544778899999999999887765
No 152
>PRK14071 6-phosphofructokinase; Provisional
Probab=31.55 E-value=1.1e+02 Score=29.34 Aligned_cols=53 Identities=11% Similarity=0.201 Sum_probs=31.2
Q ss_pred CCHHHHHHHHhcCCCcccccccchHHHHhcCC-Cch--hhHHHHHHHHHHCCCcEEEe
Q 026121 3 LSTEELERLAKLGSKAQKTARRDIAHVVATRG-NGA--TTVSATMFFASMVGIPVFVT 57 (243)
Q Consensus 3 Ls~~ele~la~~~~~~~K~SrRDl~~~~a~~~-~Ga--TTVaaTm~lA~~aGI~VFaT 57 (243)
|+.+++..+...+....+.|||.-++. .+. ++. .-..--...-+..||..|..
T Consensus 58 l~~~~v~~~~~~GGt~LgtsR~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~Id~Li~ 113 (360)
T PRK14071 58 LDLDQVDDLLRMGGTILGTTNKGDPFA--FPMPDGSLRDRSQEIIDGYHSLGLDALIG 113 (360)
T ss_pred CCHHHHhhHHhCCCceeccCCCCCccc--cccccccchHHHHHHHHHHHHcCCCEEEE
Confidence 678888888776667889998744432 111 111 01112233456789998876
No 153
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=31.36 E-value=87 Score=27.06 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHCCCcEEEec--cccccc-CCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEe
Q 026121 38 TTVSATMFFASMVGIPVFVTG--GIGGVH-RHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAA 114 (243)
Q Consensus 38 TTVaaTm~lA~~aGI~VFaTG--GIGGVH-rgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~g 114 (243)
+|+.- +..+..+|...+.+. |..+-. ......++....+.+.-+.||++. .|.++- .+++.+-..|.--+.
T Consensus 131 ~t~~e-a~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~-GGI~~~----~~~~~~l~~GadgV~ 204 (219)
T cd04729 131 STLEE-ALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAE-GRINSP----EQAAKALELGADAVV 204 (219)
T ss_pred CCHHH-HHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEe-CCCCCH----HHHHHHHHCCCCEEE
Confidence 45543 355666788776543 332221 111234555666665556676653 355544 333333335655555
Q ss_pred ecc
Q 026121 115 YKT 117 (243)
Q Consensus 115 y~t 117 (243)
.++
T Consensus 205 vGs 207 (219)
T cd04729 205 VGS 207 (219)
T ss_pred Ech
Confidence 553
No 154
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=31.35 E-value=44 Score=29.54 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=30.2
Q ss_pred CCCeEEEecccccccchhhhHhHhhhCCeeEEee
Q 026121 82 RTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAY 115 (243)
Q Consensus 82 rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy 115 (243)
..-++||-++..++=|+.+.+++|+..|++++|.
T Consensus 237 d~vilV~~~~~t~~~~~~~~~~~l~~~~~~~~G~ 270 (274)
T TIGR03029 237 RGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGA 270 (274)
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 3457788889999999999999999999999996
No 155
>PRK13530 arsenate reductase; Provisional
Probab=31.31 E-value=2.2e+02 Score=23.11 Aligned_cols=86 Identities=9% Similarity=0.065 Sum_probs=44.2
Q ss_pred CeEEEecccccccch-hhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCC-CeEEEE
Q 026121 84 PVAVVSAGIKSILDI-PRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLG-SGLVIG 161 (243)
Q Consensus 84 pV~VVcaG~KsILDi-~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~-~g~lva 161 (243)
.+-|-|||... -.+ |.+++.|+.+|+++-+.....+..+-.+...+-+ .++ +++.++.. -++ ....+.
T Consensus 31 ~~~v~SAG~~~-~~~~~~a~~~l~e~Gi~~~~~~s~~l~~~~~~~~D~ii--~m~--~~~~~~~~-----~~p~~~~~~~ 100 (133)
T PRK13530 31 KWNVYSAGIEA-HGVNPNAIKAMKEVGIDISNQTSDIIDNDILNNADLVV--TLC--SHADDVCP-----STPPHVKRVH 100 (133)
T ss_pred CEEEECCCCCC-CCCCHHHHHHHHHcCCCcCCCccccCChhHhccCCEEE--Eec--hHhhhhcc-----ccCCCceEEE
Confidence 35556666421 112 7999999999999987765544444333333222 222 12111110 111 122344
Q ss_pred eCCCcCCCCChHHHHHHH
Q 026121 162 VPIPREHAASGRVIESAI 179 (243)
Q Consensus 162 nPiP~e~~~~~~~i~~~I 179 (243)
-+||..+..+.+..+++.
T Consensus 101 w~i~DP~~~~~~~f~~~~ 118 (133)
T PRK13530 101 WGFDDPAGKEWSEFQRVR 118 (133)
T ss_pred CCCCCCCCCcHHHHHHHH
Confidence 478877776655554443
No 156
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=31.28 E-value=2.2e+02 Score=24.48 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=53.7
Q ss_pred HHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeec
Q 026121 47 ASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTE 126 (243)
Q Consensus 47 A~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~ 126 (243)
..+-|=.+++|||-||+-+ .+..-|.+.+-. |++++... =.+....+.+...|..+..
T Consensus 6 ~~~~~k~~lItGa~~~iG~------~ia~~l~~~G~~-vv~~~~~~---~~~~~~~~~~~~~~~~~~~------------ 63 (265)
T PRK07097 6 FSLKGKIALITGASYGIGF------AIAKAYAKAGAT-IVFNDINQ---ELVDKGLAAYRELGIEAHG------------ 63 (265)
T ss_pred cCCCCCEEEEeCCCchHHH------HHHHHHHHCCCe-EEEEeCCH---HHHHHHHHHHHhcCCceEE------------
Confidence 3455667999999999843 455555555433 43333221 1223333444444433222
Q ss_pred CCCcccCccCCCHHHHHHHHHH-HHhcCCCCeEEEEeCCCc---CCCCChHHHHHHHH
Q 026121 127 TSGSKVPCRVDSPEDCARLIDV-NMKLKLGSGLVIGVPIPR---EHAASGRVIESAIQ 180 (243)
Q Consensus 127 ~Sg~~~~~r~d~~~e~A~~~~~-~~~l~l~~g~lvanPiP~---e~~~~~~~i~~~I~ 180 (243)
.++.+.+++++-+.+.. ...++-..+++.+..+.. -...+.+.+++.++
T Consensus 64 -----~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~ 116 (265)
T PRK07097 64 -----YVCDVTDEDGVQAMVSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVID 116 (265)
T ss_pred -----EEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 24556788887777764 334443344333322211 12345666665554
No 157
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=31.13 E-value=1.8e+02 Score=25.00 Aligned_cols=112 Identities=11% Similarity=0.115 Sum_probs=61.6
Q ss_pred hhhh-cCCCeEEE------eccccc-ccchhhhHhHhhhCCeeEEeeccCCCcc--eeecC------CCcccCccCCCHH
Q 026121 77 LTEL-GRTPVAVV------SAGIKS-ILDIPRTLEYLETHGVCVAAYKTNEFPA--FFTET------SGSKVPCRVDSPE 140 (243)
Q Consensus 77 L~eL-~rtpV~VV------caG~Ks-ILDi~~TLE~LET~GV~V~gy~td~fPa--Fy~~~------Sg~~~~~r~d~~~ 140 (243)
|.++ ++.+|+++ |-.|.. +-.+.+-.+.++.+||.|+|...|.-.. -|..+ -+++.|.-.|.-.
T Consensus 19 l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~ 98 (203)
T cd03016 19 FHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDR 98 (203)
T ss_pred HHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchH
Confidence 3444 43566554 444433 4456667778899999999998764211 01111 4566666667666
Q ss_pred HHHHHHHHHHhc-CCC----CeEEE----------EeCCCcCCCCChHHHHHHHHHHHHHHHHcCC
Q 026121 141 DCARLIDVNMKL-KLG----SGLVI----------GVPIPREHAASGRVIESAIQSALREAREKNI 191 (243)
Q Consensus 141 e~A~~~~~~~~l-~l~----~g~lv----------anPiP~e~~~~~~~i~~~I~~Al~ea~~~gi 191 (243)
++++.+.....- +.+ +.+|| ..|.+. .-+.+++.++|+ +++-.++.|+
T Consensus 99 ~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~--gr~~~ell~~l~-~lq~~~~~~~ 161 (203)
T cd03016 99 EVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATT--GRNFDEILRVVD-ALQLTDKHKV 161 (203)
T ss_pred HHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCC--CCCHHHHHHHHH-HHhhHhhcCc
Confidence 777755432210 111 12222 134443 346777888774 4677666644
No 158
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=31.12 E-value=68 Score=26.53 Aligned_cols=43 Identities=21% Similarity=0.388 Sum_probs=32.1
Q ss_pred CCeEEEecccccccchhhhHhHhhhC--CeeEEeecc--------CCCcceeecCCC
Q 026121 83 TPVAVVSAGIKSILDIPRTLEYLETH--GVCVAAYKT--------NEFPAFFTETSG 129 (243)
Q Consensus 83 tpV~VVcaG~KsILDi~~TLE~LET~--GV~V~gy~t--------d~fPaFy~~~Sg 129 (243)
.|+.||++|| -+.+++++|+.. ...+++.++ .--|-||..-.+
T Consensus 25 ~~~~IvgaGP----SL~~~i~~lk~~~~~~~iia~~sa~~~L~~~gI~Pd~~v~~D~ 77 (170)
T PF01973_consen 25 KPAIIVGAGP----SLDKNIELLKENRNKAIIIAVNSALKALLKNGIKPDFVVSIDP 77 (170)
T ss_pred CeEEEEecCC----CHHHHHHHHHhcccCcEEEEecHHHHHHHHcCceEEEEEEcCC
Confidence 8999999999 456778999744 677776664 456888876555
No 159
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=31.01 E-value=55 Score=29.13 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=33.3
Q ss_pred CCCeEEEecccccccchhhhHhHhh-hCCeeEEeeccCC
Q 026121 82 RTPVAVVSAGIKSILDIPRTLEYLE-THGVCVAAYKTNE 119 (243)
Q Consensus 82 rtpV~VVcaG~KsILDi~~TLE~LE-T~GV~V~gy~td~ 119 (243)
+.||+++=|=--.+.+-++-++.|+ +.|+-++.|++|+
T Consensus 121 ~~PvvlaPAMN~~M~~~~~ni~~L~~~~g~~~i~~~~~~ 159 (196)
T PRK08305 121 QRPVVLAISTNDALGLNAKNLGRLLNTKNIYFVPFGQDD 159 (196)
T ss_pred CCCEEEEECCCHHHHhCHHHHHHHHhcCCEEEEecCCCC
Confidence 5799988887778888899999998 5999999999876
No 160
>PRK11178 uridine phosphorylase; Provisional
Probab=30.95 E-value=4e+02 Score=24.01 Aligned_cols=159 Identities=18% Similarity=0.278 Sum_probs=76.1
Q ss_pred CHHHHHHHHhcCCCccccc-ccchHH----------HHhcCCCchhhHHHHHHHHHHCCCcEEEeccc-ccccCCCcccc
Q 026121 4 STEELERLAKLGSKAQKTA-RRDIAH----------VVATRGNGATTVSATMFFASMVGIPVFVTGGI-GGVHRHGEHTM 71 (243)
Q Consensus 4 s~~ele~la~~~~~~~K~S-rRDl~~----------~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGI-GGVHrgae~t~ 71 (243)
.++|.+.|++.=++..+.+ .|.+.+ .+....-|..-.|.++......|.+.+.--|. ||+..+ -..-
T Consensus 25 ~p~e~~~ia~~l~~~~~~~~~~~~~~~~G~~~g~~v~v~~~GiG~~~Aa~~~~eLi~~g~~~iI~~GtaG~l~~~-l~~G 103 (251)
T PRK11178 25 DPERVEKIAALMDNPVFLASHREFTSWRAELDGKPVIVCSTGIGGPSTSIAVEELAQLGVRTFLRIGTTGAIQPH-INVG 103 (251)
T ss_pred CHHHHHHHHHHhccchheeeccCeEEEEEEEcCEEEEEEecCCCHHHHHHHHHHHHHcCCCEEEEEeccccCCCC-CCCC
Confidence 4778888875322333333 444333 44445566655555554444568887765554 554333 2222
Q ss_pred cc--ccchhhhcCCCeEEEecccccccch---hhhHhHhhhCCeeEEeeccCCCcceeecCCCcc---------------
Q 026121 72 DI--SSDLTELGRTPVAVVSAGIKSILDI---PRTLEYLETHGVCVAAYKTNEFPAFFTETSGSK--------------- 131 (243)
Q Consensus 72 Di--SaDL~eL~rtpV~VVcaG~KsILDi---~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~--------------- 131 (243)
|+ +......-.+.---+-...-...|. +.-++.++.+|+++.-=.+-.-..||....-..
T Consensus 104 DvVI~~~a~~~Dg~s~~y~~~~~p~~~~~~~~~~L~~~~~~~~~~~~~G~i~S~D~Fy~~~~~~~~~~~~i~~~~~~~~~ 183 (251)
T PRK11178 104 DVLVTTASVRLDGASLHFAPLEFPAVADFECTTALVEAAKSIGATTHVGVTASSDTFYPGQERYDTYSGRVVRRFKGSME 183 (251)
T ss_pred CEEEecceecCCCCccccCCCCcCCCCCHHHHHHHHHHHHHcCCCEEEEEEeecCcccCCCCccccccccchhhHHHHHH
Confidence 32 2111100000000000000011232 334556677788754322344456776433211
Q ss_pred -----cCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCC
Q 026121 132 -----VPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIP 165 (243)
Q Consensus 132 -----~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP 165 (243)
-...+| =|.|.+.+..+.+|.+.|.+..+.-.
T Consensus 184 ~~~~~g~~avE--MEsAAla~va~~~gv~a~~v~~~~~~ 220 (251)
T PRK11178 184 EWQAMGVMNYE--MESATLLTMCASQGLRAGMVAGVIVN 220 (251)
T ss_pred HHHHcCCeEEe--hhHHHHHHHHHHcCCcEEEEEEEEec
Confidence 001233 37888889888999998866444333
No 161
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=30.77 E-value=74 Score=23.19 Aligned_cols=20 Identities=40% Similarity=0.801 Sum_probs=15.0
Q ss_pred HHHHHHHHCCCcEEEeccccc
Q 026121 42 ATMFFASMVGIPVFVTGGIGG 62 (243)
Q Consensus 42 aTm~lA~~aGI~VFaTGGIGG 62 (243)
..-++.. .|+.++++|+||.
T Consensus 45 ~~~~l~~-~~v~~li~~~iG~ 64 (94)
T PF02579_consen 45 IAKFLAE-EGVDVLICGGIGE 64 (94)
T ss_dssp HHHHHHH-TTESEEEESCSCH
T ss_pred HHHHHHH-cCCCEEEEeCCCH
Confidence 3344555 9999999999984
No 162
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=30.54 E-value=58 Score=26.42 Aligned_cols=76 Identities=24% Similarity=0.291 Sum_probs=43.5
Q ss_pred CCCchhhHHHHHHHHHHCCCcEEEecccccccCC-----------Cccccccccc-hhhhcCCCeEEEecccccccchhh
Q 026121 33 RGNGATTVSATMFFASMVGIPVFVTGGIGGVHRH-----------GEHTMDISSD-LTELGRTPVAVVSAGIKSILDIPR 100 (243)
Q Consensus 33 ~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrg-----------ae~t~DiSaD-L~eL~rtpV~VVcaG~KsILDi~~ 100 (243)
..+|.||++ ..+|++.|+++|-+-=+---..| .+.-.+.... +..+.+ +-.||+.|.--+| -+.
T Consensus 11 ~GsGKst~~--~~la~~lg~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~~~~-~~~vi~~ggg~vl-~~~ 86 (171)
T PRK03731 11 RGCGKTTVG--MALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAALEAVTA-PSTVIATGGGIIL-TEE 86 (171)
T ss_pred CCCCHHHHH--HHHHHHhCCCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHhcC-CCeEEECCCCccC-CHH
Confidence 467889997 68899999999876533221111 1000011111 223444 4456666654444 567
Q ss_pred hHhHhhhCCeeE
Q 026121 101 TLEYLETHGVCV 112 (243)
Q Consensus 101 TLE~LET~GV~V 112 (243)
+.++|...|+.|
T Consensus 87 ~~~~l~~~~~~v 98 (171)
T PRK03731 87 NRHFMRNNGIVI 98 (171)
T ss_pred HHHHHHhCCEEE
Confidence 889998888754
No 163
>PRK06267 hypothetical protein; Provisional
Probab=30.54 E-value=1.8e+02 Score=27.54 Aligned_cols=81 Identities=12% Similarity=0.026 Sum_probs=50.5
Q ss_pred HHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCC
Q 026121 41 SATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEF 120 (243)
Q Consensus 41 aaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~f 120 (243)
.-++..|+.+||++ .+|.|=| | | | +.=|+..++++|...++..+.+.
T Consensus 156 ~~~l~~ak~aGi~v-~~g~IiG-l-g-E-------------------------t~ed~~~~l~~l~~l~~d~v~~~---- 202 (350)
T PRK06267 156 KEMLLKAKDLGLKT-GITIILG-L-G-E-------------------------TEDDIEKLLNLIEELDLDRITFY---- 202 (350)
T ss_pred HHHHHHHHHcCCee-eeeEEEe-C-C-C-------------------------CHHHHHHHHHHHHHcCCCEEEEE----
Confidence 35677888889986 4455544 3 2 1 23368888999999998766554
Q ss_pred cceeecCCCcc-cCccCCCHHHHHHHHHHHHhcCCCCe
Q 026121 121 PAFFTETSGSK-VPCRVDSPEDCARLIDVNMKLKLGSG 157 (243)
Q Consensus 121 PaFy~~~Sg~~-~~~r~d~~~e~A~~~~~~~~l~l~~g 157 (243)
+|++..|=+ .+...-+++|+.+++..-+-+ +|..
T Consensus 203 --~L~P~pGTp~~~~~~~s~~e~lr~ia~~Rl~-lP~~ 237 (350)
T PRK06267 203 --SLNPQKGTIFENKPSVTTLEYMNWVSSVRLN-FPKI 237 (350)
T ss_pred --eeeECCCCcCCCCCCCCHHHHHHHHHHHHHH-CCCC
Confidence 233333321 122345789999998876654 3433
No 164
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=30.09 E-value=4.6e+02 Score=24.87 Aligned_cols=17 Identities=12% Similarity=0.098 Sum_probs=10.0
Q ss_pred hhhHhHhhhCCeeEEee
Q 026121 99 PRTLEYLETHGVCVAAY 115 (243)
Q Consensus 99 ~~TLE~LET~GV~V~gy 115 (243)
+...+.+|.+|++++|-
T Consensus 89 ~~~~~~~~~~g~~~~g~ 105 (450)
T PRK06111 89 ASFAERCKEEGIVFIGP 105 (450)
T ss_pred HHHHHHHHHCCCeEECC
Confidence 44456666666666553
No 165
>PRK06523 short chain dehydrogenase; Provisional
Probab=29.99 E-value=3.4e+02 Score=22.97 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=13.1
Q ss_pred HCCCcEEEecccccccC
Q 026121 49 MVGIPVFVTGGIGGVHR 65 (243)
Q Consensus 49 ~aGI~VFaTGGIGGVHr 65 (243)
+.|=.|++|||-||+-+
T Consensus 7 ~~~k~vlItGas~gIG~ 23 (260)
T PRK06523 7 LAGKRALVTGGTKGIGA 23 (260)
T ss_pred CCCCEEEEECCCCchhH
Confidence 34567999999999843
No 166
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=29.87 E-value=1.6e+02 Score=28.62 Aligned_cols=113 Identities=16% Similarity=0.232 Sum_probs=63.4
Q ss_pred HHHHHHHHHCCCcEEEeccccc-ccCCCcccccccc---------------------chhhh---------cCCCeEEE-
Q 026121 41 SATMFFASMVGIPVFVTGGIGG-VHRHGEHTMDISS---------------------DLTEL---------GRTPVAVV- 88 (243)
Q Consensus 41 aaTm~lA~~aGI~VFaTGGIGG-VHrgae~t~DiSa---------------------DL~eL---------~rtpV~VV- 88 (243)
+.+..++..+||++..+|--.| |--|-+.|..|+= ||.-+ -++-.-++
T Consensus 45 ~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~ 124 (332)
T PLN02424 45 YPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLK 124 (332)
T ss_pred HHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4567889999999999998776 2223333333332 22211 11111111
Q ss_pred ecccccc------cchhhhHhHhhhCCeeEEee-ccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCe
Q 026121 89 SAGIKSI------LDIPRTLEYLETHGVCVAAY-KTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSG 157 (243)
Q Consensus 89 caG~KsI------LDi~~TLE~LET~GV~V~gy-~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g 157 (243)
-+|+..| -+.-.+++.|-..||||+|- | --|-....-.||++..+ +.+++.++++.-..|.=-+.
T Consensus 125 eaGa~aVKlEGg~~~~~~~I~~l~~~GIPV~gHiG--LtPQs~~~lGGykvqGr--~~~~a~~li~dA~ale~AGA 196 (332)
T PLN02424 125 EGGMDAVKLEGGSPSRVTAAKAIVEAGIAVMGHVG--LTPQAISVLGGFRPQGR--TAESAVKVVETALALQEAGC 196 (332)
T ss_pred HhCCcEEEECCCcHHHHHHHHHHHHcCCCEEEeec--ccceeehhhcCccccCC--CHHHHHHHHHHHHHHHHcCC
Confidence 1333222 12346788888999999963 2 12444444567787664 45677777776666643333
No 167
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.84 E-value=1.7e+02 Score=24.66 Aligned_cols=82 Identities=21% Similarity=0.257 Sum_probs=41.3
Q ss_pred cEEEecccccccCCCccccccccchhhhcCCCeEEEec-ccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcc
Q 026121 53 PVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSA-GIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSK 131 (243)
Q Consensus 53 ~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVca-G~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~ 131 (243)
.+++|||-||+-+ .+..-|.+.+- .|++++- ..+. +...++.++..+.++..+
T Consensus 4 ~vlItG~sg~iG~------~la~~L~~~g~-~vi~~~r~~~~~---~~~~~~~~~~~~~~~~~~---------------- 57 (256)
T PRK12745 4 VALVTGGRRGIGL------GIARALAAAGF-DLAINDRPDDEE---LAATQQELRALGVEVIFF---------------- 57 (256)
T ss_pred EEEEeCCCchHHH------HHHHHHHHCCC-EEEEEecCchhH---HHHHHHHHHhcCCceEEE----------------
Confidence 3899999999854 33333443332 2333321 1221 334555665554433221
Q ss_pred cCccCCCHHHHHHHHHHHHh-cCCCCeEEEEe
Q 026121 132 VPCRVDSPEDCARLIDVNMK-LKLGSGLVIGV 162 (243)
Q Consensus 132 ~~~r~d~~~e~A~~~~~~~~-l~l~~g~lvan 162 (243)
+.-+.+++++.+++..-++ ++-.. ++|-|
T Consensus 58 -~~D~~~~~~~~~~~~~~~~~~~~id-~vi~~ 87 (256)
T PRK12745 58 -PADVADLSAHEAMLDAAQAAWGRID-CLVNN 87 (256)
T ss_pred -EecCCCHHHHHHHHHHHHHhcCCCC-EEEEC
Confidence 2345577788777765443 34333 44544
No 168
>PRK06398 aldose dehydrogenase; Validated
Probab=29.76 E-value=3.6e+02 Score=23.17 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=12.2
Q ss_pred CCCcEEEecccccccC
Q 026121 50 VGIPVFVTGGIGGVHR 65 (243)
Q Consensus 50 aGI~VFaTGGIGGVHr 65 (243)
-|=.+++|||-||+-+
T Consensus 5 ~gk~vlItGas~gIG~ 20 (258)
T PRK06398 5 KDKVAIVTGGSQGIGK 20 (258)
T ss_pred CCCEEEEECCCchHHH
Confidence 3556999999999833
No 169
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=29.69 E-value=2.6e+02 Score=26.04 Aligned_cols=59 Identities=34% Similarity=0.388 Sum_probs=37.7
Q ss_pred CCCChHHHHHHHHH---HHHHHHHcCCCCccCC------------hHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHH
Q 026121 168 HAASGRVIESAIQS---ALREAREKNITGNAET------------PFLLARVNELTGGLSLASNIALVKNNALIGAKISV 232 (243)
Q Consensus 168 ~~~~~~~i~~~I~~---Al~ea~~~gi~Gk~vT------------PflL~~i~elT~G~Sl~aNiaLv~nNA~laa~IA~ 232 (243)
.+|+.++|+++|++ |-+.|++.|..|=+++ |+.++|=+|. +| |++ |..++.-+|-.
T Consensus 137 ~~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~y-GG-sle-------nR~rf~~EiI~ 207 (338)
T cd04733 137 RAMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEY-GG-SLE-------NRARLLLEIYD 207 (338)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccC-CC-CHH-------HHHHHHHHHHH
Confidence 46889999888875 5556677888887764 5555555553 33 654 45555555555
Q ss_pred HHH
Q 026121 233 ALA 235 (243)
Q Consensus 233 al~ 235 (243)
+..
T Consensus 208 aIR 210 (338)
T cd04733 208 AIR 210 (338)
T ss_pred HHH
Confidence 443
No 170
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=29.32 E-value=1.1e+02 Score=26.51 Aligned_cols=66 Identities=15% Similarity=0.121 Sum_probs=29.7
Q ss_pred HHHHHCCCcEEEecccccccCC----CccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeec
Q 026121 45 FFASMVGIPVFVTGGIGGVHRH----GEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYK 116 (243)
Q Consensus 45 ~lA~~aGI~VFaTGGIGGVHrg----ae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~ 116 (243)
..+..+|...+.++.. |.+.. ....++....+.+.-+.||++ ..|.++-=|+.+ +-..|.--+..+
T Consensus 133 ~~a~~~G~d~i~~~~~-g~t~~~~~~~~~~~~~i~~i~~~~~iPvia-~GGI~t~~~~~~----~l~~GadgV~iG 202 (221)
T PRK01130 133 LAAQKLGFDFIGTTLS-GYTEETKKPEEPDFALLKELLKAVGCPVIA-EGRINTPEQAKK----ALELGAHAVVVG 202 (221)
T ss_pred HHHHHcCCCEEEcCCc-eeecCCCCCCCcCHHHHHHHHHhCCCCEEE-ECCCCCHHHHHH----HHHCCCCEEEEc
Confidence 4566778777765422 22211 111233333344434566553 346655534333 333454444444
No 171
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=29.27 E-value=53 Score=25.50 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=31.2
Q ss_pred hcCCCeEEEeccc-ccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcc
Q 026121 80 LGRTPVAVVSAGI-KSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSK 131 (243)
Q Consensus 80 L~rtpV~VVcaG~-KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~ 131 (243)
+-....+||.+-- -|..|..|.++++...+|||+|.=. .+-.|.+++-|.+
T Consensus 23 ~~~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVE-NMs~~~Cp~Cg~~ 74 (81)
T PF10609_consen 23 LPIDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVE-NMSYFVCPHCGER 74 (81)
T ss_dssp H--SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEE-CT-EEE-TTT--E
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEE-CCCccCCCCCCCe
Confidence 3345566776654 4899999999999999999999853 3455666655433
No 172
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=29.14 E-value=2.3e+02 Score=26.31 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=20.9
Q ss_pred CCCeEEEecccccccchhhhHhHhhhCCeeEEeec
Q 026121 82 RTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYK 116 (243)
Q Consensus 82 rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~ 116 (243)
..|+..+|-|...+ +|++...|+-++++.
T Consensus 239 ~~~ilh~cg~~~~~------~~~~~~~~~~~is~d 267 (346)
T PRK00115 239 DVPVILFGKGAGEL------LEAMAETGADVVGLD 267 (346)
T ss_pred CCCEEEEcCCcHHH------HHHHHhcCCCEEeeC
Confidence 46788889887765 556766788777664
No 173
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.10 E-value=2.4e+02 Score=26.45 Aligned_cols=108 Identities=20% Similarity=0.287 Sum_probs=69.8
Q ss_pred ccccchhhhcCCC-eEEEecc--cccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHH
Q 026121 72 DISSDLTELGRTP-VAVVSAG--IKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDV 148 (243)
Q Consensus 72 DiSaDL~eL~rtp-V~VVcaG--~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~ 148 (243)
++...+.+|+++| .++|-.| +-|..=+......-|..|+.+--|. +|-.. +.+|+-+.++.
T Consensus 15 ~~~~~v~~lg~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~---------------l~~~~-~~~el~~~I~~ 78 (279)
T PRK14178 15 LLKEEIIESGLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIE---------------LPGDA-TTRTVLERIRR 78 (279)
T ss_pred HHHHHHHHhCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEE---------------CCCCC-CHHHHHHHHHH
Confidence 4556677788899 6677777 4466667777788888898876553 33332 35566666665
Q ss_pred HHhcCCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHH
Q 026121 149 NMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVN 205 (243)
Q Consensus 149 ~~~l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPflL~~i~ 205 (243)
-.+-.--.|++|--|+|+ .+|.+.+-+.|.- ++.+.| +||+=+.++.
T Consensus 79 lN~D~~V~GIlvqlPLp~--~i~~~~v~~~I~p------~KDVDG--l~~~n~g~l~ 125 (279)
T PRK14178 79 LNEDPDINGILVQLPLPK--GVDTERVIAAILP------EKDVDG--FHPLNLGRLV 125 (279)
T ss_pred HhCCCCCCeEEEcCCCCC--CCCHHHHHhccCc------ccCccc--CChhhHHHHh
Confidence 444444579999999998 4676665554432 233433 5676666664
No 174
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=29.08 E-value=2e+02 Score=24.93 Aligned_cols=59 Identities=27% Similarity=0.305 Sum_probs=38.5
Q ss_pred cCCCeEEEecccccccchhhhHh---HhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHH--HhcCCC
Q 026121 81 GRTPVAVVSAGIKSILDIPRTLE---YLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVN--MKLKLG 155 (243)
Q Consensus 81 ~rtpV~VVcaG~KsILDi~~TLE---~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~--~~l~l~ 155 (243)
.+.|+.++=+ .+-.-+.|++ .|+.+|+-|+. -.|+||. +-.++++..+.+-.+ ..||++
T Consensus 111 ~~~pv~i~P~---~m~~~~~~~~Nl~~L~~~G~~ii~----P~~g~~~---------~p~~~~~~~~~i~~~~l~~lg~~ 174 (181)
T TIGR00421 111 ERRKLVLVPR---ETPLNSIHLENMLRLSRMGAIILP----PMPAFYT---------RPKSVEDMIDFIVGRVLDQLGIE 174 (181)
T ss_pred cCCCEEEEeC---CCcCCHHHHHHHHHHHHCCCEEEC----CCCcccC---------CCCCHHHHHHHHHHHHHHHcCCC
Confidence 5678887774 4555666676 99999999975 3567873 455777755554433 345544
No 175
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=28.92 E-value=1.4e+02 Score=25.24 Aligned_cols=101 Identities=16% Similarity=0.096 Sum_probs=54.9
Q ss_pred ccccchhhhHhHhhhCCeeEEeeccCCCcc--eeecC----CCcccCccCCCHHHHHHHHHHHHh-cC--CCCeEEE---
Q 026121 93 KSILDIPRTLEYLETHGVCVAAYKTNEFPA--FFTET----SGSKVPCRVDSPEDCARLIDVNMK-LK--LGSGLVI--- 160 (243)
Q Consensus 93 KsILDi~~TLE~LET~GV~V~gy~td~fPa--Fy~~~----Sg~~~~~r~d~~~e~A~~~~~~~~-l~--l~~g~lv--- 160 (243)
+.+-++..-.+.++.+||.|+|...|.-+. -|... .++..|.-.|.-.++++.+..... .+ .++..||
T Consensus 49 ~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~ 128 (187)
T TIGR03137 49 TELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPE 128 (187)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCC
Confidence 556677777788888999999998765211 11111 245555555655566665543211 12 2333333
Q ss_pred ----E---eCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChH
Q 026121 161 ----G---VPIPREHAASGRVIESAIQSALREAREKNITGNAETPF 199 (243)
Q Consensus 161 ----a---nPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPf 199 (243)
. ++.|.+ -+.+++-+.|+ +++-+.+.+ ..++|+
T Consensus 129 G~I~~~~~~~~~~~--~~~~~ll~~l~-~~~~~~~~~---~~~~~~ 168 (187)
T TIGR03137 129 GVIQAVEITDNGIG--RDASELLRKIK-AAQYVAAHP---GEVCPA 168 (187)
T ss_pred CEEEEEEEeCCCCC--CCHHHHHHHHH-HhhhHHhcC---CeeeCC
Confidence 2 133332 25666666664 445555442 367776
No 176
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=28.54 E-value=51 Score=30.38 Aligned_cols=108 Identities=21% Similarity=0.331 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHhcC----CCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccc----ccc-------CC
Q 026121 2 RLSTEELERLAKLG----SKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIG----GVH-------RH 66 (243)
Q Consensus 2 GLs~~ele~la~~~----~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIG----GVH-------rg 66 (243)
+|+++|++.+...- ....|+...+.=..+....+|.|||+- .+|...|++++-+.-.= |.. .|
T Consensus 107 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~--~La~~Lg~~~id~D~~i~~~~G~~i~ei~~~~G 184 (309)
T PRK08154 107 QASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGR--MLAARLGVPFVELNREIEREAGLSVSEIFALYG 184 (309)
T ss_pred cCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHH--HHHHHcCCCEEeHHHHHHHHhCCCHHHHHHHHC
Confidence 45555555443210 123455555544444556789999986 46888899888544210 100 01
Q ss_pred Ccccc-cc-ccchhh-hcCCCeEEEecccccccchhhhHhHhhhCCeeEE
Q 026121 67 GEHTM-DI-SSDLTE-LGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVA 113 (243)
Q Consensus 67 ae~t~-Di-SaDL~e-L~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~ 113 (243)
+..| ++ +.=|.+ +.+.+.+||++|. ++...+.++++|-..++-|.
T Consensus 185 -~~~fr~~e~~~l~~ll~~~~~~VI~~Gg-g~v~~~~~~~~l~~~~~~V~ 232 (309)
T PRK08154 185 -QEGYRRLERRALERLIAEHEEMVLATGG-GIVSEPATFDLLLSHCYTVW 232 (309)
T ss_pred -HHHHHHHHHHHHHHHHhhCCCEEEECCC-chhCCHHHHHHHHhCCEEEE
Confidence 0001 00 011233 3445556666655 45777888888877776443
No 177
>PRK05876 short chain dehydrogenase; Provisional
Probab=28.45 E-value=4.1e+02 Score=23.34 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=51.0
Q ss_pred CCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCC
Q 026121 50 VGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSG 129 (243)
Q Consensus 50 aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg 129 (243)
.|=.+++|||-||+-+ -+...|.+.+ .-|+.++-. -=++..+.+.|+.+|..+..+
T Consensus 5 ~~k~vlVTGas~gIG~------ala~~La~~G---~~Vv~~~r~-~~~l~~~~~~l~~~~~~~~~~-------------- 60 (275)
T PRK05876 5 PGRGAVITGGASGIGL------ATGTEFARRG---ARVVLGDVD-KPGLRQAVNHLRAEGFDVHGV-------------- 60 (275)
T ss_pred CCCEEEEeCCCchHHH------HHHHHHHHCC---CEEEEEeCC-HHHHHHHHHHHHhcCCeEEEE--------------
Confidence 3446999999999843 3343444333 223322211 113455566666666543322
Q ss_pred cccCccCCCHHHHHHHHHHH-HhcCCCCeEEEEeCCC----cCCCCChHHHHH
Q 026121 130 SKVPCRVDSPEDCARLIDVN-MKLKLGSGLVIGVPIP----REHAASGRVIES 177 (243)
Q Consensus 130 ~~~~~r~d~~~e~A~~~~~~-~~l~l~~g~lvanPiP----~e~~~~~~~i~~ 177 (243)
+.-+.+++++.+++..- ..+| +--+||-|.-- .-..++.+.+++
T Consensus 61 ---~~Dv~d~~~v~~~~~~~~~~~g-~id~li~nAg~~~~~~~~~~~~~~~~~ 109 (275)
T PRK05876 61 ---MCDVRHREEVTHLADEAFRLLG-HVDVVFSNAGIVVGGPIVEMTHDDWRW 109 (275)
T ss_pred ---eCCCCCHHHHHHHHHHHHHHcC-CCCEEEECCCcCCCCCcccCCHHHHHH
Confidence 34456778887777653 3333 22356655421 112355565544
No 178
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=28.22 E-value=1.4e+02 Score=24.05 Aligned_cols=28 Identities=7% Similarity=0.193 Sum_probs=20.6
Q ss_pred hhhHhHhhhCCeeEEeeccCCCcceeec
Q 026121 99 PRTLEYLETHGVCVAAYKTNEFPAFFTE 126 (243)
Q Consensus 99 ~~TLE~LET~GV~V~gy~td~fPaFy~~ 126 (243)
|.+++.|+..|+++-+.....+-.+...
T Consensus 41 ~~a~~~l~e~Gid~~~~~~~~l~~~~~~ 68 (129)
T TIGR02691 41 PNAVKAMKEVGIDISNQTSDLIDLDILN 68 (129)
T ss_pred HHHHHHHHHcCCCcCCcccccCChhhcc
Confidence 7899999999999877765544444333
No 179
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=28.20 E-value=1.4e+02 Score=27.21 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=26.1
Q ss_pred CCCChHHHHHHHHHHH---HHHHHcCCCCccCC---hHHHHH
Q 026121 168 HAASGRVIESAIQSAL---REAREKNITGNAET---PFLLAR 203 (243)
Q Consensus 168 ~~~~~~~i~~~I~~Al---~ea~~~gi~Gk~vT---PflL~~ 203 (243)
.+|+.++|+++|++-. +.|.+.|..|=+++ .||+..
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~q 170 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQ 170 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHH
Confidence 4689999999987644 45556888887775 566654
No 180
>PRK06114 short chain dehydrogenase; Provisional
Probab=27.88 E-value=3.8e+02 Score=22.80 Aligned_cols=87 Identities=23% Similarity=0.304 Sum_probs=45.1
Q ss_pred CCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCC
Q 026121 50 VGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSG 129 (243)
Q Consensus 50 aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg 129 (243)
.|=.+++|||-||+-+ .+..-|.+-+ ..|++++..... .+....+.|+..|..+..
T Consensus 7 ~~k~~lVtG~s~gIG~------~ia~~l~~~G-~~v~~~~r~~~~--~~~~~~~~l~~~~~~~~~--------------- 62 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQ------RIAIGLAQAG-ADVALFDLRTDD--GLAETAEHIEAAGRRAIQ--------------- 62 (254)
T ss_pred CCCEEEEECCCchHHH------HHHHHHHHCC-CEEEEEeCCcch--HHHHHHHHHHhcCCceEE---------------
Confidence 4556899999999833 4555555544 234333322111 234556666665533322
Q ss_pred cccCccCCCHHHHHHHHHHH-HhcCCCCeEEEEeC
Q 026121 130 SKVPCRVDSPEDCARLIDVN-MKLKLGSGLVIGVP 163 (243)
Q Consensus 130 ~~~~~r~d~~~e~A~~~~~~-~~l~l~~g~lvanP 163 (243)
.+..+.+++++.+++..- ..++--. +||.|.
T Consensus 63 --~~~D~~~~~~i~~~~~~~~~~~g~id-~li~~a 94 (254)
T PRK06114 63 --IAADVTSKADLRAAVARTEAELGALT-LAVNAA 94 (254)
T ss_pred --EEcCCCCHHHHHHHHHHHHHHcCCCC-EEEECC
Confidence 223455677777766643 3343222 455554
No 181
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=27.87 E-value=81 Score=30.18 Aligned_cols=69 Identities=22% Similarity=0.350 Sum_probs=34.9
Q ss_pred HHHHHHHCCCcEEEecccccccC-CCccccccccchhh-hc-CCCeEEEecccccccchhhhHhHhhhCCeeEEeec
Q 026121 43 TMFFASMVGIPVFVTGGIGGVHR-HGEHTMDISSDLTE-LG-RTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYK 116 (243)
Q Consensus 43 Tm~lA~~aGI~VFaTGGIGGVHr-gae~t~DiSaDL~e-L~-rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~ 116 (243)
+...|.-+|++-+..+|-||-.. ++..|+|.=.++.+ ++ +.|| .++.|..+=+|+-+.| .+|...+|.+
T Consensus 238 da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i-~~dgGir~g~Dv~kal----aLGA~~v~ig 309 (356)
T PF01070_consen 238 DAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPI-IADGGIRRGLDVAKAL----ALGADAVGIG 309 (356)
T ss_dssp HHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEE-EEESS--SHHHHHHHH----HTT-SEEEES
T ss_pred HHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeE-EEeCCCCCHHHHHHHH----HcCCCeEEEc
Confidence 44556666666666666666432 23344444444444 43 4444 5566666666666655 3566656554
No 182
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=27.78 E-value=4.2e+02 Score=23.25 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHCCCcEEEeccccccc-----CCCcccc-----ccccchhhhcC---CCeEEEecccccccchhhhHhH
Q 026121 38 TTVSATMFFASMVGIPVFVTGGIGGVH-----RHGEHTM-----DISSDLTELGR---TPVAVVSAGIKSILDIPRTLEY 104 (243)
Q Consensus 38 TTVaaTm~lA~~aGI~VFaTGGIGGVH-----rgae~t~-----DiSaDL~eL~r---tpV~VVcaG~KsILDi~~TLE~ 104 (243)
..-..+..+|+..|++||++-.-..-. -|....+ +....+.++.. ..+++=|.|.+. +...+..
T Consensus 152 ~ig~~~~~lak~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~~~---~~~~~~~ 228 (327)
T PRK10754 152 GVGLIACQWAKALGAKLIGTVGSAQKAQRAKKAGAWQVINYREENIVERVKEITGGKKVRVVYDSVGKDT---WEASLDC 228 (327)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEEcCCCCcHHHHHHHHcCCCCeEEEEECCcHHH---HHHHHHH
Confidence 344467789999999999875421000 0111122 22233444422 356677777654 3456777
Q ss_pred hhhCCeeE
Q 026121 105 LETHGVCV 112 (243)
Q Consensus 105 LET~GV~V 112 (243)
|...|.-|
T Consensus 229 l~~~g~~v 236 (327)
T PRK10754 229 LQRRGLMV 236 (327)
T ss_pred hccCCEEE
Confidence 87777555
No 183
>CHL00194 ycf39 Ycf39; Provisional
Probab=27.78 E-value=2.5e+02 Score=25.24 Aligned_cols=11 Identities=27% Similarity=0.631 Sum_probs=9.8
Q ss_pred cEEEecccccc
Q 026121 53 PVFVTGGIGGV 63 (243)
Q Consensus 53 ~VFaTGGIGGV 63 (243)
+|++|||-|-+
T Consensus 2 kIlVtGatG~i 12 (317)
T CHL00194 2 SLLVIGATGTL 12 (317)
T ss_pred EEEEECCCcHH
Confidence 69999999977
No 184
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=27.74 E-value=1.6e+02 Score=25.10 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=39.8
Q ss_pred cccchhhhHhHhhhCCeeEEeeccCCC---cceee--cC----CCcccCccCCCHHHHHHHHHH
Q 026121 94 SILDIPRTLEYLETHGVCVAAYKTNEF---PAFFT--ET----SGSKVPCRVDSPEDCARLIDV 148 (243)
Q Consensus 94 sILDi~~TLE~LET~GV~V~gy~td~f---PaFy~--~~----Sg~~~~~r~d~~~e~A~~~~~ 148 (243)
.+..+.+..+.++.+||.|+|...|.- +++.. +. .+++.|+-.|.-.++++.+..
T Consensus 55 e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv 118 (199)
T PTZ00253 55 EIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGV 118 (199)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHHcCC
Confidence 456788889999999999999997632 23321 11 246788888888888887664
No 185
>TIGR00230 sfsA sugar fermentation stimulation protein. probable regulatory factor involved in maltose metabolism contains a putative DNA binding domain. Isolated as a gene which enabled E.coli strain MK2001 to use maltose.
Probab=27.73 E-value=67 Score=29.31 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=49.0
Q ss_pred HhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCC-CChHHHHHHHHHH
Q 026121 104 YLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHA-ASGRVIESAIQSA 182 (243)
Q Consensus 104 ~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~-~~~~~i~~~I~~A 182 (243)
|+|..||+-+-=+...||-=.|. --.+.+-.+++...+ ....+||.+=.|.-.. .+...+|....++
T Consensus 131 ~vEVKsvtL~~~~~A~FPDApT~----------RG~kHL~eL~~l~~~--~ra~vlF~vqr~d~~~f~p~~~~Dp~fa~~ 198 (232)
T TIGR00230 131 YVEVKSATLKKEILALFPDAPTE----------RGRKHLRELEEILKE--SRAVVLFVVALPSVRAFSPNREGDEEYYRL 198 (232)
T ss_pred EEEEccEEeCCCCEEECCCCccH----------HHHHHHHHHHHHHHh--CCEEEEEEEeCCCCCEEeeCcccCHHHHHH
Confidence 99999998652223344432111 112333334444444 4678888887775444 4677888999999
Q ss_pred HHHHHHcCCC
Q 026121 183 LREAREKNIT 192 (243)
Q Consensus 183 l~ea~~~gi~ 192 (243)
+++|.++|+.
T Consensus 199 l~~A~~~GVe 208 (232)
T TIGR00230 199 LRRAHEAGVE 208 (232)
T ss_pred HHHHHHCCCE
Confidence 9999999985
No 186
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=27.63 E-value=1.1e+02 Score=22.58 Aligned_cols=70 Identities=16% Similarity=0.081 Sum_probs=42.8
Q ss_pred hcCCCchhhHHHHHHHHHH-CCCcEEEecccccccCCCcccccc-------ccchhhhcCCCeEEEecccccccchhhhH
Q 026121 31 ATRGNGATTVSATMFFASM-VGIPVFVTGGIGGVHRHGEHTMDI-------SSDLTELGRTPVAVVSAGIKSILDIPRTL 102 (243)
Q Consensus 31 a~~~~GaTTVaaTm~lA~~-aGI~VFaTGGIGGVHrgae~t~Di-------SaDL~eL~rtpV~VVcaG~KsILDi~~TL 102 (243)
.+|..|-||+|..+...-. .|.+|.+---=-. +. -.=+|. ...+.+.+..-++|+-....|+-...+.+
T Consensus 7 ~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~-~d--~viiD~p~~~~~~~~~~l~~ad~viv~~~~~~~s~~~~~~~~ 83 (104)
T cd02042 7 QKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ-YD--YIIIDTPPSLGLLTRNALAAADLVLIPVQPSPLDLDGLEKLL 83 (104)
T ss_pred CCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC-CC--EEEEeCcCCCCHHHHHHHHHCCEEEEeccCCHHHHHHHHHHH
Confidence 4788999999988765554 7888766421110 00 000121 11233455556777788888888888888
Q ss_pred h
Q 026121 103 E 103 (243)
Q Consensus 103 E 103 (243)
+
T Consensus 84 ~ 84 (104)
T cd02042 84 E 84 (104)
T ss_pred H
Confidence 7
No 187
>PRK11478 putative lyase; Provisional
Probab=27.59 E-value=71 Score=23.97 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=18.8
Q ss_pred chhhhHhHhhhCCeeEEeeccCC
Q 026121 97 DIPRTLEYLETHGVCVAAYKTNE 119 (243)
Q Consensus 97 Di~~TLE~LET~GV~V~gy~td~ 119 (243)
|+.++.++|+..|+++...+.+.
T Consensus 85 d~~~~~~~l~~~G~~~~~~~~~~ 107 (129)
T PRK11478 85 DIDAAVAHLESHNVKCEAIRVDP 107 (129)
T ss_pred CHHHHHHHHHHcCCeeeccccCC
Confidence 78999999999999987554433
No 188
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=27.57 E-value=2.5e+02 Score=25.35 Aligned_cols=122 Identities=14% Similarity=0.192 Sum_probs=64.7
Q ss_pred HHHHHHHHHHCCCcEEEeccccc---------ccCCCccccccccchhh----h------cCCCeEEEecccccccchhh
Q 026121 40 VSATMFFASMVGIPVFVTGGIGG---------VHRHGEHTMDISSDLTE----L------GRTPVAVVSAGIKSILDIPR 100 (243)
Q Consensus 40 VaaTm~lA~~aGI~VFaTGGIGG---------VHrgae~t~DiSaDL~e----L------~rtpV~VVcaG~KsILDi~~ 100 (243)
..+.+-++...+|+++..+.-.- +.|-....-+...-+.+ + +-..|++|...-----++..
T Consensus 83 ~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~g~~~~~ 162 (347)
T cd06340 83 TLAASQVAERYGVPFVVDGAVSDSITERGFKYTFRITPHDGMFTRDMFDFLKDLNEKTGKPLKTVALVHEDTEFGTSVAE 162 (347)
T ss_pred HHHHHHHHHHhCCCEEeccccchHHhhcCCceEEecCCChHHHHHHHHHHHHHhhHhcCCCCceEEEEecCchHhHHHHH
Confidence 44556777888999997654321 12211111111111222 2 12567777653211122223
Q ss_pred hH-hHhhhCCeeEEeec-----cCCCcceee--cCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEE
Q 026121 101 TL-EYLETHGVCVAAYK-----TNEFPAFFT--ETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIG 161 (243)
Q Consensus 101 TL-E~LET~GV~V~gy~-----td~fPaFy~--~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lva 161 (243)
.+ +.++..|++|+... +.+|...-. +.++..+=+-..+..+.+.++++-++.|+..-+++.
T Consensus 163 ~~~~~~~~~G~~vv~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 231 (347)
T cd06340 163 AIKKFAKERGFEIVEDISYPANARDLTSEVLKLKAANPDAILPASYTNDAILLVRTMKEQRVEPKAVYS 231 (347)
T ss_pred HHHHHHHHcCCEEEEeeccCCCCcchHHHHHHHHhcCCCEEEEcccchhHHHHHHHHHHcCCCCcEEEe
Confidence 33 47889999998643 123332222 233433334455677888888888888887655544
No 189
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=27.52 E-value=3.4e+02 Score=24.74 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=24.9
Q ss_pred CeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCc
Q 026121 109 GVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPR 166 (243)
Q Consensus 109 GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~ 166 (243)
.|.+.||.. +.+.+|...+-+-. +- .+-. +..-..+|+| +++.+|+|.
T Consensus 257 ~v~~~g~~~-~~~~l~~~aD~~v~--~~-gg~t----~~EA~a~g~P--vI~~~~~~g 304 (380)
T PRK13609 257 ALKVFGYVE-NIDELFRVTSCMIT--KP-GGIT----LSEAAALGVP--VILYKPVPG 304 (380)
T ss_pred cEEEEechh-hHHHHHHhccEEEe--CC-CchH----HHHHHHhCCC--EEECCCCCC
Confidence 489999864 46666655443211 00 0111 1122234776 666688885
No 190
>PRK04155 chaperone protein HchA; Provisional
Probab=27.46 E-value=12 Score=34.89 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=28.3
Q ss_pred EEEecccccccCCCccccccccchhhh------cCCCeEEEecccccccch
Q 026121 54 VFVTGGIGGVHRHGEHTMDISSDLTEL------GRTPVAVVSAGIKSILDI 98 (243)
Q Consensus 54 VFaTGGIGGVHrgae~t~DiSaDL~eL------~rtpV~VVcaG~KsILDi 98 (243)
||..||.|+.+. +--|.+|.+| ..-+|+-||.|+-..+..
T Consensus 151 V~iPGG~g~~~d-----L~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 151 VFIPGGHGALIG-----LPESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred EEECCCCchHHH-----HhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 799999987642 2335666664 356899999999655553
No 191
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=27.40 E-value=2.4e+02 Score=28.32 Aligned_cols=120 Identities=17% Similarity=0.159 Sum_probs=74.6
Q ss_pred EEEecccccccCCCccccccccchhh-hcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccC--------CCccee
Q 026121 54 VFVTGGIGGVHRHGEHTMDISSDLTE-LGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTN--------EFPAFF 124 (243)
Q Consensus 54 VFaTGGIGGVHrgae~t~DiSaDL~e-L~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td--------~fPaFy 124 (243)
++=++|.||-.+ .||.||.=..= |+..-+-|+==|.+++=----+.++||..||++- -..+ .=.+|+
T Consensus 268 ~~D~~gtggdg~---~t~nist~~a~v~A~~G~~V~kHG~r~~ss~~Gsadvle~lGv~~~-~~~~~~~~~l~~~g~~fl 343 (534)
T PRK14607 268 TVDTCGTGGDGF---GTFNISTTSAFVVAAAGVPVAKHGNRAVSSKSGSADVLEALGVKLE-MTPEEAASVLRETGFSFL 343 (534)
T ss_pred ceEEccCCCCCC---CccccHHHHHHHHHhCCCcEEEECCCCCCCCccHHHHHHHcCCCCC-CCHHHHHHHHHHhCcEEe
Confidence 355678888544 79999842222 4666777777787777766778899999999983 1111 124455
Q ss_pred ecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEE----EEeCCCcCCCC---ChHHHHHHHHHHHHHH
Q 026121 125 TETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLV----IGVPIPREHAA---SGRVIESAIQSALREA 186 (243)
Q Consensus 125 ~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~l----vanPiP~e~~~---~~~~i~~~I~~Al~ea 186 (243)
....= .| ....++..+++||+++-+= +.||....+.+ -.....+.+.++++.-
T Consensus 344 ~ap~~--------~p-~l~~~~~~R~~Lg~rTifN~lgpL~NP~~~~~~v~Gv~~~~~~~~~a~~l~~l 403 (534)
T PRK14607 344 FAPLF--------HP-AMKHAAPARRELGIRTAFNLLGPLTNPARVKYQIVGVFDPSYAEPLAQALQRL 403 (534)
T ss_pred ecccc--------CH-HHHHHHHHHHHhCCCcHHHhHHhccCCCCCCcEEEeeCCHHHHHHHHHHHHHc
Confidence 32221 12 4556777899999885432 34787666663 2344455566666653
No 192
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=27.22 E-value=2.8e+02 Score=25.85 Aligned_cols=121 Identities=20% Similarity=0.324 Sum_probs=73.1
Q ss_pred CCccccccccc--hh----hhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCH
Q 026121 66 HGEHTMDISSD--LT----ELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSP 139 (243)
Q Consensus 66 gae~t~DiSaD--L~----eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~ 139 (243)
|+..-.||-+| |. +++.-||||=+-=++.+++= - ..|.-.+=.| .|..||.. .|.-+.
T Consensus 39 ggAt~vDIAadp~LV~~~~~~s~lPICVSaVep~~f~~a------V-~AGAdliEIG--NfDsFY~q-------Gr~f~a 102 (242)
T PF04481_consen 39 GGATFVDIAADPELVKLAKSLSNLPICVSAVEPELFVAA------V-KAGADLIEIG--NFDSFYAQ-------GRRFSA 102 (242)
T ss_pred cCCceEEecCCHHHHHHHHHhCCCCeEeecCCHHHHHHH------H-HhCCCEEEec--chHHHHhc-------CCeecH
Confidence 33456799665 44 46778999865544443221 1 1244444343 89999954 455567
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHH------cCCCCccCChHHHHHHHHH
Q 026121 140 EDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREARE------KNITGNAETPFLLARVNEL 207 (243)
Q Consensus 140 ~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~------~gi~Gk~vTPflL~~i~el 207 (243)
+|+-++-+.-++| || -+.+.+-||.-..+|.+. -+.+.|.++.. -|.+-+..+|=.|.-|.+.
T Consensus 103 ~eVL~Lt~~tR~L-LP-~~~LsVTVPHiL~ld~Qv---~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIeka 171 (242)
T PF04481_consen 103 EEVLALTRETRSL-LP-DITLSVTVPHILPLDQQV---QLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKA 171 (242)
T ss_pred HHHHHHHHHHHHh-CC-CCceEEecCccccHHHHH---HHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHH
Confidence 8888888877776 34 456788888877776655 45556665542 2334455566666655543
No 193
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=27.16 E-value=2.6e+02 Score=23.42 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=12.2
Q ss_pred CCCcEEEecccccccC
Q 026121 50 VGIPVFVTGGIGGVHR 65 (243)
Q Consensus 50 aGI~VFaTGGIGGVHr 65 (243)
-|=++++|||-||+-+
T Consensus 4 ~~k~vlItGas~gIG~ 19 (248)
T TIGR01832 4 EGKVALVTGANTGLGQ 19 (248)
T ss_pred CCCEEEEECCCchHHH
Confidence 3446999999998844
No 194
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=26.92 E-value=3.5e+02 Score=25.90 Aligned_cols=78 Identities=13% Similarity=0.076 Sum_probs=48.7
Q ss_pred EEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEE-----
Q 026121 86 AVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVI----- 160 (243)
Q Consensus 86 ~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lv----- 160 (243)
.++|.|+|+.=+|...++.-+ .|+.|. ..+||.+|+.++.+...+.+.+--+++
T Consensus 89 ii~~~g~K~~~~l~~a~~~~~-~g~~v~--------------------i~vDs~~EL~~l~~~a~~~~~~~~v~lRinp~ 147 (409)
T cd06830 89 LIICNGYKDDEYIELALLARK-LGHNVI--------------------IVIEKLSELDLILELAKKLGVKPLLGVRIKLA 147 (409)
T ss_pred EEEECCcCCHHHHHHHHhcCc-CCceEE--------------------EEECCHHHHHHHHHHHHHcCCCceEEEEEccC
Confidence 667888888766655554433 355431 368888888888876555543333333
Q ss_pred ---------EeCCCcCCCCChHHHHHHHHHHHH
Q 026121 161 ---------GVPIPREHAASGRVIESAIQSALR 184 (243)
Q Consensus 161 ---------anPiP~e~~~~~~~i~~~I~~Al~ 184 (243)
..+.+..+-++.+++.++++.+.+
T Consensus 148 ~~~~~~~~~~~~~~sKFGi~~~~~~~~~~~~~~ 180 (409)
T cd06830 148 SKGSGKWQESGGDRSKFGLTASEILEVVEKLKE 180 (409)
T ss_pred CCCCcceeccCCCCCCCCCCHHHHHHHHHHHHh
Confidence 233456778898888776665543
No 195
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=26.90 E-value=5e+02 Score=23.86 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=44.0
Q ss_pred HHHHHHHHCCCcEEEec-ccccccCCCccccccccch--------hhhcCCCeEEEecccccccc-----hhhhHhHhhh
Q 026121 42 ATMFFASMVGIPVFVTG-GIGGVHRHGEHTMDISSDL--------TELGRTPVAVVSAGIKSILD-----IPRTLEYLET 107 (243)
Q Consensus 42 aTm~lA~~aGI~VFaTG-GIGGVHrgae~t~DiSaDL--------~eL~rtpV~VVcaG~KsILD-----i~~TLE~LET 107 (243)
.+..++..+|++...|| +++-+..|-..+--+|-|- ..=...|++++-.+--+..+ +..+...++.
T Consensus 23 ~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~~~ 102 (254)
T cd06557 23 PTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLMKE 102 (254)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHHHH
Confidence 45678899999999998 5565655655443333221 11223465555565566666 6667777776
Q ss_pred CCeeEE
Q 026121 108 HGVCVA 113 (243)
Q Consensus 108 ~GV~V~ 113 (243)
-|+--+
T Consensus 103 aGa~aV 108 (254)
T cd06557 103 AGADAV 108 (254)
T ss_pred hCCeEE
Confidence 665433
No 196
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=26.70 E-value=2.1e+02 Score=22.68 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=46.2
Q ss_pred eEEEecccccccchhhhHhHhhhCCeeEEeeccC-----CCcceeecCC---CcccCccCCCHHHHHHHHHHHHhcCCCC
Q 026121 85 VAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTN-----EFPAFFTETS---GSKVPCRVDSPEDCARLIDVNMKLKLGS 156 (243)
Q Consensus 85 V~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td-----~fPaFy~~~S---g~~~~~r~d~~~e~A~~~~~~~~l~l~~ 156 (243)
|+||-+..+-====.+.+.+|..+|.+|+..+.. ..+.|=+-.. .+.+=.-+-.++.+.++++.-.++|.+.
T Consensus 3 iAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~~ 82 (116)
T PF13380_consen 3 IAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVKA 82 (116)
T ss_dssp EEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-SE
T ss_pred EEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCCE
Confidence 4555554331111245688888899999888742 2444433331 1111123345778888888888888654
Q ss_pred eEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCCC
Q 026121 157 GLVIGVPIPREHAASGRVIESAIQSALREAREKNIT 192 (243)
Q Consensus 157 g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~ 192 (243)
-+++.- ..=+++++.|++.|++
T Consensus 83 v~~~~g--------------~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 83 VWLQPG--------------AESEELIEAAREAGIR 104 (116)
T ss_dssp EEE-TT--------------S--HHHHHHHHHTT-E
T ss_pred EEEEcc--------------hHHHHHHHHHHHcCCE
Confidence 444332 1223455566666664
No 197
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=26.58 E-value=1.1e+02 Score=28.82 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=47.0
Q ss_pred CHHHHHHHHhcCCCc---ccccccchHHHHhc----------CCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccc
Q 026121 4 STEELERLAKLGSKA---QKTARRDIAHVVAT----------RGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHT 70 (243)
Q Consensus 4 s~~ele~la~~~~~~---~K~SrRDl~~~~a~----------~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t 70 (243)
|.+|+++.++.+.++ -|.|-.|+..++.. -.+||-|..- ..-=...|+.+++||-+ -| . ..
T Consensus 198 tleqa~ea~~agaDiI~LDn~~~e~l~~av~~~~~~~~~~~leaSGGI~~~n-i~~yA~tGvD~Is~gal--~~-a--~~ 271 (284)
T PRK06096 198 TPKEAIAALRAQPDVLQLDKFSPQQATEIAQIAPSLAPHCTLSLAGGINLNT-LKNYADCGIRLFITSAP--YY-A--AP 271 (284)
T ss_pred CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHH-HHHHHhcCCCEEEECcc--cc-C--CC
Confidence 456666665544332 36666677666653 2478888754 44445679999999998 44 3 78
Q ss_pred cccccchhhhc
Q 026121 71 MDISSDLTELG 81 (243)
Q Consensus 71 ~DiSaDL~eL~ 81 (243)
+|+|-|+.-+.
T Consensus 272 ~Disl~i~~~~ 282 (284)
T PRK06096 272 ADIKVSLQPAA 282 (284)
T ss_pred cCeEEEEEecc
Confidence 99998875443
No 198
>PRK06139 short chain dehydrogenase; Provisional
Probab=26.58 E-value=3.7e+02 Score=24.84 Aligned_cols=103 Identities=15% Similarity=0.166 Sum_probs=49.8
Q ss_pred CCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCc
Q 026121 51 GIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGS 130 (243)
Q Consensus 51 GI~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~ 130 (243)
+=.|++|||-||+-+. +..-|.+-+- .|++++-... .+....+.++..|..+..+
T Consensus 7 ~k~vlITGAs~GIG~a------ia~~la~~G~-~Vvl~~R~~~---~l~~~~~~~~~~g~~~~~~--------------- 61 (330)
T PRK06139 7 GAVVVITGASSGIGQA------TAEAFARRGA-RLVLAARDEE---ALQAVAEECRALGAEVLVV--------------- 61 (330)
T ss_pred CCEEEEcCCCCHHHHH------HHHHHHHCCC-EEEEEECCHH---HHHHHHHHHHhcCCcEEEE---------------
Confidence 4468999999998552 3333333332 2433332222 2334445555555443322
Q ss_pred ccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeC-CCc---CCCCChHHHHHHHH
Q 026121 131 KVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVP-IPR---EHAASGRVIESAIQ 180 (243)
Q Consensus 131 ~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanP-iP~---e~~~~~~~i~~~I~ 180 (243)
+.-+.+++++.+++..-.+..-+=-++|-|. +.. -...+.+.+++.++
T Consensus 62 --~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~ 113 (330)
T PRK06139 62 --PTDVTDADQVKALATQAASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQ 113 (330)
T ss_pred --EeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHH
Confidence 2345677777777665443321223455543 211 12345566555554
No 199
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=26.53 E-value=2.6e+02 Score=22.35 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 026121 172 GRVIESAIQSALREARE 188 (243)
Q Consensus 172 ~~~i~~~I~~Al~ea~~ 188 (243)
.+++.+.|++|++.|..
T Consensus 127 ~~~~~~~i~~A~~~a~~ 143 (155)
T cd07035 127 PEEIPEALRRAFRIALS 143 (155)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 45667777777776653
No 200
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=26.53 E-value=79 Score=27.83 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=31.5
Q ss_pred CCCeEEEecccccccchhhhHhHhh-hCCeeEEeeccCCC
Q 026121 82 RTPVAVVSAGIKSILDIPRTLEYLE-THGVCVAAYKTNEF 120 (243)
Q Consensus 82 rtpV~VVcaG~KsILDi~~TLE~LE-T~GV~V~gy~td~f 120 (243)
+.|++++=+=--.+..=++-++.|. +.|+-++.|++|++
T Consensus 116 ~rPlvlaPamN~~m~~~~~Ni~~L~~~~g~~~v~f~qd~~ 155 (187)
T TIGR02852 116 NKPVVLAISTNDALGLNAVNLMRLLNTKNIYFVPFGQDDP 155 (187)
T ss_pred CCCEEEEECcCHHHHhCHHHHHHHHHcCCEEEEeecCCCC
Confidence 5788777766666666689999984 99999999998864
No 201
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=26.52 E-value=97 Score=20.83 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=24.4
Q ss_pred eEEEecccccccc-hhhhHhHhhhCCeeEEee
Q 026121 85 VAVVSAGIKSILD-IPRTLEYLETHGVCVAAY 115 (243)
Q Consensus 85 V~VVcaG~KsILD-i~~TLE~LET~GV~V~gy 115 (243)
|.||+.|.+..-+ +.+-++.|...|++|.-.
T Consensus 4 isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i 35 (66)
T cd04922 4 LALVGDGMAGTPGVAATFFSALAKANVNIRAI 35 (66)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEE
Confidence 6788888766555 568889999999999544
No 202
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=26.50 E-value=1.5e+02 Score=23.05 Aligned_cols=91 Identities=18% Similarity=0.070 Sum_probs=51.5
Q ss_pred CCHHHHHHHHhcCCCcccccccchHHHH-hcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhh-
Q 026121 3 LSTEELERLAKLGSKAQKTARRDIAHVV-ATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTEL- 80 (243)
Q Consensus 3 Ls~~ele~la~~~~~~~K~SrRDl~~~~-a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL- 80 (243)
+|.+|+..+-+.+++..-+.-|+-...- .....|+..+.-..+.- ....-+.+..|..+
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~-------------------~~~~~~~~~~l~~~~ 61 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPD-------------------MEINPNFLAELEEKV 61 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhccc-------------------cccCHHHHHHHHhhC
Confidence 5788888887654467788888865554 44455655544322110 00000122223222
Q ss_pred -cCCCeEEEecccccccchhhhHhHhhhCCee-EEee
Q 026121 81 -GRTPVAVVSAGIKSILDIPRTLEYLETHGVC-VAAY 115 (243)
Q Consensus 81 -~rtpV~VVcaG~KsILDi~~TLE~LET~GV~-V~gy 115 (243)
..+||+|+|.+.. .-....++|...|.+ |..|
T Consensus 62 ~~~~~ivv~C~~G~---rs~~aa~~L~~~G~~~v~~l 95 (117)
T cd01522 62 GKDRPVLLLCRSGN---RSIAAAEAAAQAGFTNVYNV 95 (117)
T ss_pred CCCCeEEEEcCCCc---cHHHHHHHHHHCCCCeEEEC
Confidence 5788999997743 233567788888875 4433
No 203
>PRK07577 short chain dehydrogenase; Provisional
Probab=26.45 E-value=3.7e+02 Score=22.21 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=11.4
Q ss_pred CCcEEEecccccccC
Q 026121 51 GIPVFVTGGIGGVHR 65 (243)
Q Consensus 51 GI~VFaTGGIGGVHr 65 (243)
+=.+++|||-||+-+
T Consensus 3 ~k~vlItG~s~~iG~ 17 (234)
T PRK07577 3 SRTVLVTGATKGIGL 17 (234)
T ss_pred CCEEEEECCCCcHHH
Confidence 345899999998844
No 204
>PF03749 SfsA: Sugar fermentation stimulation protein; InterPro: IPR005224 The sugar fermentation stimulation protein is a probable regulatory factor involved in maltose metabolism. It contains a putative DNA-binding domain, and was isolated as a gene which enabled Escherichia coli W3110 (strain MK2001) to use maltose [].
Probab=26.44 E-value=40 Score=30.25 Aligned_cols=78 Identities=24% Similarity=0.318 Sum_probs=52.6
Q ss_pred HhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCC-CChHHHHHHHHHH
Q 026121 104 YLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHA-ASGRVIESAIQSA 182 (243)
Q Consensus 104 ~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~-~~~~~i~~~I~~A 182 (243)
|+|-.||+-+--+...||-=.|... ....+|.+++.+. |....+||.+--|.-.. .+..++|....++
T Consensus 118 ~vEVKsvtL~~~~~a~FPDApT~RG-------~kHL~eL~~l~~~----G~ra~vlFvvqr~d~~~f~p~~~~Dp~fa~~ 186 (215)
T PF03749_consen 118 YVEVKSVTLVEDGIAMFPDAPTERG-------RKHLRELAELAEE----GYRAAVLFVVQRPDAERFRPNREIDPEFAEA 186 (215)
T ss_pred EEEEeeeEeccCCcccCCCccchHH-------HHHHHHHHHHHhc----cCcEEEEEEEECCCCCEEeEChhcCHHHHHH
Confidence 8888888766544556664322211 1234455554443 77888998887776444 4567889999999
Q ss_pred HHHHHHcCCC
Q 026121 183 LREAREKNIT 192 (243)
Q Consensus 183 l~ea~~~gi~ 192 (243)
+.+|.++|+.
T Consensus 187 l~~A~~~GV~ 196 (215)
T PF03749_consen 187 LREAAEAGVE 196 (215)
T ss_pred HHHHHHCCCE
Confidence 9999999984
No 205
>PRK07109 short chain dehydrogenase; Provisional
Probab=26.21 E-value=2.1e+02 Score=26.26 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=50.5
Q ss_pred CCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCC
Q 026121 50 VGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSG 129 (243)
Q Consensus 50 aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg 129 (243)
.+=.|++|||-||+-+. +..-|.+-+ ..|++++-... .+....+.++..|..+..+
T Consensus 7 ~~k~vlITGas~gIG~~------la~~la~~G-~~Vvl~~R~~~---~l~~~~~~l~~~g~~~~~v-------------- 62 (334)
T PRK07109 7 GRQVVVITGASAGVGRA------TARAFARRG-AKVVLLARGEE---GLEALAAEIRAAGGEALAV-------------- 62 (334)
T ss_pred CCCEEEEECCCCHHHHH------HHHHHHHCC-CEEEEEECCHH---HHHHHHHHHHHcCCcEEEE--------------
Confidence 34469999999998542 333333332 23444443322 2334445555555444322
Q ss_pred cccCccCCCHHHHHHHHHH-HHhcCCCCeEEEEeCCC---c-CCCCChHHHHHHH
Q 026121 130 SKVPCRVDSPEDCARLIDV-NMKLKLGSGLVIGVPIP---R-EHAASGRVIESAI 179 (243)
Q Consensus 130 ~~~~~r~d~~~e~A~~~~~-~~~l~l~~g~lvanPiP---~-e~~~~~~~i~~~I 179 (243)
+.-+.+++++.+++.. ..++|--. ++|-|.-. . -..++.+.+++.+
T Consensus 63 ---~~Dv~d~~~v~~~~~~~~~~~g~iD-~lInnAg~~~~~~~~~~~~~~~~~~~ 113 (334)
T PRK07109 63 ---VADVADAEAVQAAADRAEEELGPID-TWVNNAMVTVFGPFEDVTPEEFRRVT 113 (334)
T ss_pred ---EecCCCHHHHHHHHHHHHHHCCCCC-EEEECCCcCCCCchhhCCHHHHHHHH
Confidence 2345677777776653 33444223 34444321 1 1235666666653
No 206
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=25.87 E-value=3.5e+02 Score=29.51 Aligned_cols=149 Identities=14% Similarity=0.145 Sum_probs=89.2
Q ss_pred HHHHHHHHHHCCCcEEEecccccccCCCccccccccchhh---hcCCCeEEEecccccc---cchhhhHhHhhhCCeeEE
Q 026121 40 VSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTE---LGRTPVAVVSAGIKSI---LDIPRTLEYLETHGVCVA 113 (243)
Q Consensus 40 VaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~e---L~rtpV~VVcaG~KsI---LDi~~TLE~LET~GV~V~ 113 (243)
.-.-..++..-+|..+.+ ++|| +..++.+.+|.+ |....|-++.+++++| -|=.++-++|+..|+|+.
T Consensus 70 ~~~v~~ii~~e~~DaIlp-~~gg-----~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp 143 (1050)
T TIGR01369 70 PEAVEKIIEKERPDAILP-TFGG-----QTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVP 143 (1050)
T ss_pred HHHHHHHHHHhCCCEEEE-CCCC-----hhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCC
Confidence 334455666777765554 3332 223344433332 3444566777777776 677788899999999998
Q ss_pred eeccC-------------CCcceeecCCCcc--cCccCCCHHHHHHHHHHHHhc-------------CC----------C
Q 026121 114 AYKTN-------------EFPAFFTETSGSK--VPCRVDSPEDCARLIDVNMKL-------------KL----------G 155 (243)
Q Consensus 114 gy~td-------------~fPaFy~~~Sg~~--~~~r~d~~~e~A~~~~~~~~l-------------~l----------~ 155 (243)
-|..- .||.+--+..|.. =-+.+++++|+.+.+...... |. .
T Consensus 144 ~~~~v~s~~e~~~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~G~~Eiev~v~rd~ 223 (1050)
T TIGR01369 144 ESEIAHSVEEALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASPINQVLVEKSLAGWKEIEYEVMRDS 223 (1050)
T ss_pred CeeecCCHHHHHHHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEcccCceEEEEEEEEeC
Confidence 88631 2787776655432 235788999987765543321 11 0
Q ss_pred CeEEEEeCCCcC-----------------CCCChHHHHHHHHHHHHHHHHcCCCCc
Q 026121 156 SGLVIGVPIPRE-----------------HAASGRVIESAIQSALREAREKNITGN 194 (243)
Q Consensus 156 ~g~lvanPiP~e-----------------~~~~~~~i~~~I~~Al~ea~~~gi~Gk 194 (243)
.|-.+..|.-+. ..++.+..+++.+.|.+-+++-|+.|-
T Consensus 224 ~g~~~~~~~~e~~~p~gvh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~ 279 (1050)
T TIGR01369 224 NDNCITVCNMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGG 279 (1050)
T ss_pred CCCEEEEeeceeccCcceecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcce
Confidence 111111121111 125667778888999999999999876
No 207
>PF14601 TFX_C: DNA_binding protein, TFX, C-term; PDB: 1NR3_A.
Probab=25.75 E-value=1.3e+02 Score=23.41 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=32.6
Q ss_pred CCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCC
Q 026121 154 LGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGG 210 (243)
Q Consensus 154 l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPflL~~i~elT~G 210 (243)
|.+.+.+.+| .+..+-.+-+.-.++|++.||+=+.-||=|+.+|.+....
T Consensus 11 l~Apv~i~i~-------~GtDl~diP~~if~~aDe~gIKV~y~t~~li~~i~~~a~~ 60 (84)
T PF14601_consen 11 LNAPVRITIP-------AGTDLFDIPEIIFKEADEAGIKVRYDTPELINFIREAAPD 60 (84)
T ss_dssp H---EEEEE---------GGGHHHHHHHHHHHHHHHS-S----HHHHHHHHHHH-SS
T ss_pred cCCCEEEEEc-------CCCcHHHhHHHHHHHHhHcCCeeccCHHHHHHHHHHhchh
Confidence 3455666665 3667777888899999999999999999999999987663
No 208
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.66 E-value=2.5e+02 Score=28.54 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHH
Q 026121 175 IESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNN 223 (243)
Q Consensus 175 i~~~I~~Al~ea~~~gi~Gk~vTPflL~~i~elT~G~Sl~aNiaLv~nN 223 (243)
+..+|.+.|+|++++|+.=++ +.+-+ .-.|..+..|+..++.|
T Consensus 259 L~~~vR~~l~e~e~~g~~w~~----v~D~l--R~~~~~~wq~l~~~er~ 301 (474)
T COG4529 259 LLSIVRLLLREAEEAGQDWRD----VVDGL--RPQGQWIWQNLPAVERR 301 (474)
T ss_pred HHHHHHHHHHHHHHhCCCHHH----HHHhh--hhhhhHHHHhCCHHHHH
Confidence 778999999999999997665 33333 23456666788888777
No 209
>COG1775 HgdB Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
Probab=25.62 E-value=2.7e+02 Score=27.63 Aligned_cols=95 Identities=13% Similarity=0.128 Sum_probs=52.5
Q ss_pred EEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCC-------------cccC---ccCCCHHHHHHHHHHHH
Q 026121 87 VVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSG-------------SKVP---CRVDSPEDCARLIDVNM 150 (243)
Q Consensus 87 VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg-------------~~~~---~r~d~~~e~A~~~~~~~ 150 (243)
++=+|.--+-|=+.+++.+|..|.+|+++....=.-||...-+ ++.| +..++..-+=.+.+.-.
T Consensus 237 i~~~g~p~~~~~~~v~~~~e~~~~~vv~~~~c~~ar~f~~~~~e~~~v~D~lAd~Y~~~~~~~~~pn~e~r~k~i~~mvk 316 (379)
T COG1775 237 ILITGIPILGDNPKVWEILEEVGEFVVKDEVCTGARAFEFAVSEGGDVEDALADQYFKIPCACYSPNDEFRVKYISRMVK 316 (379)
T ss_pred EEeecCcccCCCcchhHHHHhhcceeeecccccceeEeeccccccccHHHHHHHHHhccccccCCccHHHHHHHHHHHHH
Confidence 4557777788889999999999999999974433334433322 1122 22222212222223333
Q ss_pred hcCCCCeEEEEeCCCcCCCCChHHHHHHHHH
Q 026121 151 KLKLGSGLVIGVPIPREHAASGRVIESAIQS 181 (243)
Q Consensus 151 ~l~l~~g~lvanPiP~e~~~~~~~i~~~I~~ 181 (243)
..+..|.++..+--=..++++..++++.|++
T Consensus 317 E~~vDGvv~~~l~fC~p~~~e~~~lk~~~kE 347 (379)
T COG1775 317 EYNVDGVVLYTLRFCKPYSVEYPELKRRLKE 347 (379)
T ss_pred HcCCCeEeehhhhccCccccccHHHHHHHHh
Confidence 4455555555555444455555555554443
No 210
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=25.57 E-value=63 Score=30.74 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=25.2
Q ss_pred HHHHHHHHCCCcEEEecc-cccccCCCccccccccchhhh
Q 026121 42 ATMFFASMVGIPVFVTGG-IGGVHRHGEHTMDISSDLTEL 80 (243)
Q Consensus 42 aTm~lA~~aGI~VFaTGG-IGGVHrgae~t~DiSaDL~eL 80 (243)
.-+.-+|.+|.+|++.|| -|| +..+++|--+|+..|
T Consensus 255 ~f~~~~~~~g~~V~~~~~~~~~---~~~~~~d~~~~~~~l 291 (309)
T cd08613 255 RFLARMEAAGTRVILVGPYTGG---EFSEGFDTPEDLKRL 291 (309)
T ss_pred HHHHHHHHcCCeEEEEecccCC---cccCCCCCHHHHHHH
Confidence 345678999999999998 344 444566666666554
No 211
>PRK12829 short chain dehydrogenase; Provisional
Probab=25.56 E-value=2.8e+02 Score=23.41 Aligned_cols=16 Identities=44% Similarity=0.850 Sum_probs=13.6
Q ss_pred HCCCcEEEeccccccc
Q 026121 49 MVGIPVFVTGGIGGVH 64 (243)
Q Consensus 49 ~aGI~VFaTGGIGGVH 64 (243)
+-+-++++|||-||+-
T Consensus 9 ~~~~~vlItGa~g~iG 24 (264)
T PRK12829 9 LDGLRVLVTGGASGIG 24 (264)
T ss_pred cCCCEEEEeCCCCcHH
Confidence 5677899999999983
No 212
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=25.54 E-value=1.9e+02 Score=23.97 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=30.1
Q ss_pred CCeEEEeccccc----ccchhhhHhHhhhCCeeEEeeccCCCcceeecCCC
Q 026121 83 TPVAVVSAGIKS----ILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSG 129 (243)
Q Consensus 83 tpV~VVcaG~Ks----ILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg 129 (243)
..+-|-|||..+ =.| |.|+|.|+.+|+..-+.....+-.|...+.-
T Consensus 29 ~~~~v~SAGt~~~~g~~~~-~~a~~vl~e~Gid~~~~~~k~i~~~~~~~~D 78 (139)
T COG0394 29 DNVEVDSAGTGGHPGEPPD-PRAVEVLAEHGIDISGHRSKQLTEEDFDEFD 78 (139)
T ss_pred CCeEEECCccCCCCCCCCC-HHHHHHHHHcCCCcCCccCccCchhhhhhCC
Confidence 456666666333 222 6899999999999988666555555544333
No 213
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=25.48 E-value=68 Score=28.38 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=22.2
Q ss_pred cccccccchhhhHhHhhh--CCeeEEeeccCCCcceeecCCCcc
Q 026121 90 AGIKSILDIPRTLEYLET--HGVCVAAYKTNEFPAFFTETSGSK 131 (243)
Q Consensus 90 aG~KsILDi~~TLE~LET--~GV~V~gy~td~fPaFy~~~Sg~~ 131 (243)
.|.. +...-.++++. ..|...||. ++++.||....-+=
T Consensus 218 ~G~g---~~~~l~~~~~~~~~~v~~~g~~-~~~~~~l~~ad~~v 257 (350)
T cd03785 218 TGKG---DLEEVKKAYEELGVNYEVFPFI-DDMAAAYAAADLVI 257 (350)
T ss_pred cCCc---cHHHHHHHHhccCCCeEEeehh-hhHHHHHHhcCEEE
Confidence 4554 33444444444 468888886 67777776655443
No 214
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=25.35 E-value=76 Score=29.47 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=23.6
Q ss_pred CCCChHHHHHHHHH---HHHHHHHcCCCCccCC
Q 026121 168 HAASGRVIESAIQS---ALREAREKNITGNAET 197 (243)
Q Consensus 168 ~~~~~~~i~~~I~~---Al~ea~~~gi~Gk~vT 197 (243)
.+|+.++|+++|++ |.+.|.+.|..|=+++
T Consensus 142 ~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~ 174 (336)
T cd02932 142 RELTREEIAEVVDAFVAAARRAVEAGFDVIEIH 174 (336)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 46899999988875 4455567899999888
No 215
>PRK13599 putative peroxiredoxin; Provisional
Probab=25.32 E-value=1.5e+02 Score=26.17 Aligned_cols=98 Identities=11% Similarity=0.172 Sum_probs=55.6
Q ss_pred ccccchhhhHhHhhhCCeeEEeeccCCC------cceeec--CCCcccCccCCCHHHHHHHHHHHHh-cC---C------
Q 026121 93 KSILDIPRTLEYLETHGVCVAAYKTNEF------PAFFTE--TSGSKVPCRVDSPEDCARLIDVNMK-LK---L------ 154 (243)
Q Consensus 93 KsILDi~~TLE~LET~GV~V~gy~td~f------PaFy~~--~Sg~~~~~r~d~~~e~A~~~~~~~~-l~---l------ 154 (243)
+.+-.+.+-.+.++.+||.|+|...|.- -.|... ..+++.|.-.|.-.++|+.+..... .+ .
T Consensus 46 ~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfII 125 (215)
T PRK13599 46 TEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIV 125 (215)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEE
Confidence 3455677777888899999999997753 234333 2345556566665677765542110 01 1
Q ss_pred -CCeEEEEeC-CCcCCCCChHHHHHHHHHHHHHHHHcCC
Q 026121 155 -GSGLVIGVP-IPREHAASGRVIESAIQSALREAREKNI 191 (243)
Q Consensus 155 -~~g~lvanP-iP~e~~~~~~~i~~~I~~Al~ea~~~gi 191 (243)
+.|.|...= -|....-+-++|-++|+ +|+...+.++
T Consensus 126 D~dG~Ir~~~~~p~~~gr~~~eilr~l~-~lq~~~~~~~ 163 (215)
T PRK13599 126 DDKGTIRLIMYYPQEVGRNVDEILRALK-ALQTADQYGV 163 (215)
T ss_pred CCCCEEEEEEEcCCCCCCCHHHHHHHHH-HhhhhhhcCC
Confidence 223332221 13333346777777776 5777777654
No 216
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=25.25 E-value=1.1e+02 Score=23.34 Aligned_cols=16 Identities=13% Similarity=0.385 Sum_probs=13.0
Q ss_pred HHHHCCCcEEEecccc
Q 026121 46 FASMVGIPVFVTGGIG 61 (243)
Q Consensus 46 lA~~aGI~VFaTGGIG 61 (243)
+-.+.|.++..|||||
T Consensus 56 ~~~l~~~~vvi~~~iG 71 (102)
T cd00853 56 LEALEDCAILYCAAIG 71 (102)
T ss_pred HHHHCCCcEEEEhhcC
Confidence 4445799999999999
No 217
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=25.22 E-value=3.8e+02 Score=26.04 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHhcCC-CCeEEEEeC-CCcCCCCChHHHHHHHHHH
Q 026121 138 SPEDCARLIDVNMKLKL-GSGLVIGVP-IPREHAASGRVIESAIQSA 182 (243)
Q Consensus 138 ~~~e~A~~~~~~~~l~l-~~g~lvanP-iP~e~~~~~~~i~~~I~~A 182 (243)
+++..-+.+....+-|. ..+++++|| -|.-.-++.+.++++++-|
T Consensus 183 ~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~ 229 (447)
T PLN02607 183 TPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFV 229 (447)
T ss_pred CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHH
Confidence 45566555554333343 357899877 3555568888888876644
No 218
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=25.21 E-value=54 Score=25.97 Aligned_cols=57 Identities=19% Similarity=0.151 Sum_probs=40.2
Q ss_pred EEEecccccccCCCccccccccchhhhcCCCeEEEec-------ccccccchhhhHhHhhhCC-eeEE
Q 026121 54 VFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSA-------GIKSILDIPRTLEYLETHG-VCVA 113 (243)
Q Consensus 54 VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVca-------G~KsILDi~~TLE~LET~G-V~V~ 113 (243)
|++.|--=|+|+|-. .+=.-+.+++..++++|.. +.+.|+....-++.|+..| |-.+
T Consensus 1 v~~~G~FDg~H~GH~---~~l~~a~~~~~~~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~~~Vd~v 65 (125)
T TIGR01518 1 VLTYGTFDLLHWGHI---NLLERAKQLGDYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDLV 65 (125)
T ss_pred CEEcceeCCCCHHHH---HHHHHHHHcCCEEEEEEechHHHhhcCCCCCCCHHHHHHHHHcCCCccEE
Confidence 466677778999832 3333445566667776664 4678888898999999997 8765
No 219
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.15 E-value=5e+02 Score=23.24 Aligned_cols=103 Identities=21% Similarity=0.310 Sum_probs=52.4
Q ss_pred HCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCC
Q 026121 49 MVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETS 128 (243)
Q Consensus 49 ~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~S 128 (243)
+.|=.+++|||-||+-+ .+..-|.+-+- .|++++-+... ......+.++..|..|..+
T Consensus 10 l~~k~~lVTGas~gIG~------~ia~~L~~~Ga-~Vv~~~~~~~~--~~~~~~~~i~~~g~~~~~~------------- 67 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGR------AEALGLARLGA-TVVVNDVASAL--DASDVLDEIRAAGAKAVAV------------- 67 (306)
T ss_pred CCCCEEEEECCCChHHH------HHHHHHHHCCC-EEEEecCCchh--HHHHHHHHHHhcCCeEEEE-------------
Confidence 45667999999999844 44444444432 23333322111 2334445555555444322
Q ss_pred CcccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeC-CCcC---CCCChHHHHHH
Q 026121 129 GSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVP-IPRE---HAASGRVIESA 178 (243)
Q Consensus 129 g~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanP-iP~e---~~~~~~~i~~~ 178 (243)
+..+.+++++.+++..-.++| +=-+||.|. ++.. ..++.+.++..
T Consensus 68 ----~~Dv~d~~~~~~~~~~~~~~g-~iD~li~nAG~~~~~~~~~~~~~~~~~~ 116 (306)
T PRK07792 68 ----AGDISQRATADELVATAVGLG-GLDIVVNNAGITRDRMLFNMSDEEWDAV 116 (306)
T ss_pred ----eCCCCCHHHHHHHHHHHHHhC-CCCEEEECCCCCCCCCcccCCHHHHHHH
Confidence 334667788888777544444 223455543 3222 12455555543
No 220
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.14 E-value=1.4e+02 Score=26.60 Aligned_cols=48 Identities=21% Similarity=0.334 Sum_probs=23.8
Q ss_pred CCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHC-CCcEEEecccc
Q 026121 3 LSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMV-GIPVFVTGGIG 61 (243)
Q Consensus 3 Ls~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~a-GI~VFaTGGIG 61 (243)
+|++|+.+-.+.+-+.+|+ .| ....|-..+. .+.... ++|+++||||.
T Consensus 117 ~T~~E~~~A~~~Gad~vkl----FP----a~~~G~~~ik---~l~~~~p~ip~~atGGI~ 165 (213)
T PRK06552 117 MTVTEIVTALEAGSEIVKL----FP----GSTLGPSFIK---AIKGPLPQVNVMVTGGVN 165 (213)
T ss_pred CCHHHHHHHHHcCCCEEEE----CC----cccCCHHHHH---HHhhhCCCCEEEEECCCC
Confidence 4566666555544566776 12 0112211221 122233 48888888775
No 221
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=25.06 E-value=2.1e+02 Score=21.74 Aligned_cols=88 Identities=18% Similarity=0.124 Sum_probs=57.4
Q ss_pred cCCCeEEEecccccccchhhhHhHhhhCCeeEEeecc-CCCcceeecCCCcccCc-cCCCHHHHHHHHHHHHhcCCCCeE
Q 026121 81 GRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKT-NEFPAFFTETSGSKVPC-RVDSPEDCARLIDVNMKLKLGSGL 158 (243)
Q Consensus 81 ~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t-d~fPaFy~~~Sg~~~~~-r~d~~~e~A~~~~~~~~l~l~~g~ 158 (243)
...++.+.+.|.. +| +..++.|...|+..+.++- .-.|.. +.-.. +-.++++.-+.++.-.+.|++...
T Consensus 75 ~~~~i~~~t~~~~--~~-~~~l~~l~~~~~~~i~~~l~s~~~~~------~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~ 145 (166)
T PF04055_consen 75 RGIRISINTNGTL--LD-EELLDELKKLGVDRIRISLESLDEES------VLRIINRGKSFERVLEALERLKEAGIPRVI 145 (166)
T ss_dssp TTEEEEEEEESTT--HC-HHHHHHHHHTTCSEEEEEEBSSSHHH------HHHHHSSTSHHHHHHHHHHHHHHTTSETEE
T ss_pred cccceeeeccccc--hh-HHHHHHHHhcCccEEecccccCCHHH------hhhhhcCCCCHHHHHHHHHHHHHcCCCcEE
Confidence 4667888888864 33 8999999999977777762 222221 22222 445678888888888888888654
Q ss_pred EEEeCCCcCCCCChHHHHHHHH
Q 026121 159 VIGVPIPREHAASGRVIESAIQ 180 (243)
Q Consensus 159 lvanPiP~e~~~~~~~i~~~I~ 180 (243)
.+...+|.+ ..+++++.++
T Consensus 146 ~~i~~~~~~---~~~e~~~~~~ 164 (166)
T PF04055_consen 146 IFIVGLPGE---NDEEIEETIR 164 (166)
T ss_dssp EEEEEBTTT---SHHHHHHHHH
T ss_pred EEEEEeCCC---CHHHHHHHhC
Confidence 555555544 3566666554
No 222
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=25.03 E-value=5.7e+02 Score=24.21 Aligned_cols=96 Identities=16% Similarity=0.168 Sum_probs=51.7
Q ss_pred HhcCCCchhhHHHHHH-HHHHCCCcEEEecccccccCCCccccccc-cc--hhhhcCCCeEEEeccccccc---------
Q 026121 30 VATRGNGATTVSATMF-FASMVGIPVFVTGGIGGVHRHGEHTMDIS-SD--LTELGRTPVAVVSAGIKSIL--------- 96 (243)
Q Consensus 30 ~a~~~~GaTTVaaTm~-lA~~aGI~VFaTGGIGGVHrgae~t~DiS-aD--L~eL~rtpV~VVcaG~KsIL--------- 96 (243)
+....+|=||+.--++ .-+.-|.+| |.|--.|.+. .+|.+ .| -..-+-..++++.++-+.-|
T Consensus 211 ~g~~~~GKtt~~~~l~~~l~~~g~~v---~~iKh~~h~~--~~d~~g~Ds~r~~~aGa~~v~~~~~~~~~~~~~~~~~~~ 285 (366)
T PRK14489 211 VGYSGTGKTTLLEKLIPELIARGYRI---GLIKHSHHRV--DIDKPGKDSHRLRAAGANPTMIVCPERWALMRETPEEAV 285 (366)
T ss_pred ecCCCCCHHHHHHHHHHHHHHcCCEE---EEEEECCccc--CCCCCCChhHHHHhCCCceEEEEcCCeEEEEEeCCCCCc
Confidence 3457889999854333 334458887 4444333331 23332 13 22223344555555544444
Q ss_pred chhhhHhHhh---hCCeeEEeeccCCCcceeecCCCc
Q 026121 97 DIPRTLEYLE---THGVCVAAYKTNEFPAFFTETSGS 130 (243)
Q Consensus 97 Di~~TLE~LE---T~GV~V~gy~td~fPaFy~~~Sg~ 130 (243)
++..-++.|+ .-=|-|=||+...+|-.-..+...
T Consensus 286 ~l~~~~~~~~~~~~D~vlvEG~k~~~~pki~v~r~~~ 322 (366)
T PRK14489 286 PFKVLIATFDPEEVDLILVEGFKHEPLPKIQLHRQLI 322 (366)
T ss_pred CHHHHHHhcCCcCCCEEEEcccccCCCCeEEEecccc
Confidence 3444444442 233667799988899887776543
No 223
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=25.02 E-value=1.4e+02 Score=25.30 Aligned_cols=66 Identities=27% Similarity=0.300 Sum_probs=38.5
Q ss_pred hcCCCeEEEecccccccch--hh-hHhHhhhCCeeEEeeccCCCcceeec-CCCcccCccCCCHHHHHHHHHH
Q 026121 80 LGRTPVAVVSAGIKSILDI--PR-TLEYLETHGVCVAAYKTNEFPAFFTE-TSGSKVPCRVDSPEDCARLIDV 148 (243)
Q Consensus 80 L~rtpV~VVcaG~KsILDi--~~-TLE~LET~GV~V~gy~td~fPaFy~~-~Sg~~~~~r~d~~~e~A~~~~~ 148 (243)
+....+.|..+..-..... |. .+|+|- .|+||++......+-+... ..|+-.+ .++++++++.+..
T Consensus 292 ~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~-~G~pvi~~~~~~~~~~~~~~~~g~~~~--~~~~~~l~~~i~~ 361 (394)
T cd03794 292 LAAADVGLVPLKPGPAFEGVSPSKLFEYMA-AGKPVLASVDGESAELVEEAGAGLVVP--PGDPEALAAAILE 361 (394)
T ss_pred HHhhCeeEEeccCcccccccCchHHHHHHH-CCCcEEEecCCCchhhhccCCcceEeC--CCCHHHHHHHHHH
Confidence 5566666666554433122 22 345553 5899999887666666655 3444433 3467777776654
No 224
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=25.01 E-value=2.9e+02 Score=22.08 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=39.5
Q ss_pred hHhHhhhCCeeEEeeccCCCcceeecCCCc-ccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCCCChHHHHHHH
Q 026121 101 TLEYLETHGVCVAAYKTNEFPAFFTETSGS-KVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAI 179 (243)
Q Consensus 101 TLE~LET~GV~V~gy~td~fPaFy~~~Sg~-~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~I 179 (243)
-++.|-..|..|..+-.+.-+.-. .+++ .++..+.+++.+.+.+. -...++.+.+.+..+ ...+
T Consensus 14 l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~------~~d~vi~~~~~~~~~-------~~~~ 78 (183)
T PF13460_consen 14 LAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALK------GADAVIHAAGPPPKD-------VDAA 78 (183)
T ss_dssp HHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHT------TSSEEEECCHSTTTH-------HHHH
T ss_pred HHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhh------hcchhhhhhhhhccc-------cccc
Confidence 456666666777766432211111 2332 23345677777666554 245666666666552 3344
Q ss_pred HHHHHHHHHcCC
Q 026121 180 QSALREAREKNI 191 (243)
Q Consensus 180 ~~Al~ea~~~gi 191 (243)
+..++.+++.|+
T Consensus 79 ~~~~~a~~~~~~ 90 (183)
T PF13460_consen 79 KNIIEAAKKAGV 90 (183)
T ss_dssp HHHHHHHHHTTS
T ss_pred cccccccccccc
Confidence 445555555564
No 225
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=24.89 E-value=2.6e+02 Score=25.50 Aligned_cols=38 Identities=8% Similarity=0.071 Sum_probs=26.6
Q ss_pred CCeEEEeccccc-ccc----hhhhHhHhhhCCeeEEeeccCCCcce
Q 026121 83 TPVAVVSAGIKS-ILD----IPRTLEYLETHGVCVAAYKTNEFPAF 123 (243)
Q Consensus 83 tpV~VVcaG~Ks-ILD----i~~TLE~LET~GV~V~gy~td~fPaF 123 (243)
.|++|+|-|--. +.+ .....++|-.+|..|+.| ++|+|
T Consensus 25 ~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~---Dl~G~ 67 (266)
T TIGR03101 25 RGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQI---DLYGC 67 (266)
T ss_pred ceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEE---CCCCC
Confidence 478999999533 322 233458888899999988 56664
No 226
>PRK07394 hypothetical protein; Provisional
Probab=24.72 E-value=1.3e+02 Score=28.78 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHhcC-CCcccccc---cchHHHHhcCCCch-hh--H-HHHHHHHHHCCCcEEEecccccccCCCcccccc
Q 026121 2 RLSTEELERLAKLG-SKAQKTAR---RDIAHVVATRGNGA-TT--V-SATMFFASMVGIPVFVTGGIGGVHRHGEHTMDI 73 (243)
Q Consensus 2 GLs~~ele~la~~~-~~~~K~Sr---RDl~~~~a~~~~Ga-TT--V-aaTm~lA~~aGI~VFaTGGIGGVHrgae~t~Di 73 (243)
|-|.+||.-+++.- +...++.. .++...+..+.+|. -| + .++.+++..+|+||+-=|.=+ .....=|
T Consensus 55 GET~eEiaG~~~a~~~~~~~~~~~~~~~~~d~~GtggDG~~~t~NiSt~aA~v~A~~Gv~V~kHGnr~-----~ssk~Gv 129 (342)
T PRK07394 55 RPTPEELAGMLDTYDELGPKLQSPSNQRPPIVFGMPYDGRSRTAPIYPLTALILAAAGQPVVLHGGDR-----MPTKYGV 129 (342)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCCCCceeEEeCCCCCCCCCcccHHHHHHHHHHCCCeEEEECCCC-----CCCCCCc
Confidence 66888888877531 12233321 12445667777774 12 1 134566777899999988622 1111112
Q ss_pred -ccchhhhcCCCeEEEeccccccc-chhhhHhHhhhCCeeEEeeccCCCcce
Q 026121 74 -SSDLTELGRTPVAVVSAGIKSIL-DIPRTLEYLETHGVCVAAYKTNEFPAF 123 (243)
Q Consensus 74 -SaDL~eL~rtpV~VVcaG~KsIL-Di~~TLE~LET~GV~V~gy~td~fPaF 123 (243)
|+|+-|- -|++--+ +.....+.||..|+.-+ |.....|++
T Consensus 130 tsaDvLe~---------LGv~~~~~~~~~~~~~l~~~g~~Fl-~ap~~hP~m 171 (342)
T PRK07394 130 PLVELWQG---------LGVDLTGLSLEQVQEGFEQTGLAFI-YQPDHFPLA 171 (342)
T ss_pred hHHHHHHH---------CCCCCCCCCHHHHHHHHHHcCceee-echhhCHHH
Confidence 5665552 3444333 66666677777776533 334444544
No 227
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=24.72 E-value=2.4e+02 Score=26.49 Aligned_cols=126 Identities=11% Similarity=0.057 Sum_probs=75.8
Q ss_pred CCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccc--cccc--------hhhhcCCCeEEEecccccccchhhhHh
Q 026121 34 GNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMD--ISSD--------LTELGRTPVAVVSAGIKSILDIPRTLE 103 (243)
Q Consensus 34 ~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~D--iSaD--------L~eL~rtpV~VVcaG~KsILDi~~TLE 103 (243)
-+...+..+.+-+|...+||.+.+..- ......|- ...+ +..++=..|+++.--...+.=+..-++
T Consensus 70 p~ss~~~~~v~~i~~~~~IP~I~~~~~----~~~~~~f~i~~~p~~~~a~~~~i~~~~wk~vaiiYd~~~~~~~lq~l~~ 145 (371)
T cd06388 70 LYDKRSVHTLTSFCSALHISLITPSFP----TEGESQFVLQLRPSLRGALLSLLDHYEWNRFVFLYDTDRGYSILQAIME 145 (371)
T ss_pred cCCHHHHHHHHHHhhCCCCCeeecCcc----ccCCCceEEEeChhhhhHHHHHHHhcCceEEEEEecCCccHHHHHHHHH
Confidence 345566667788999999999976543 11123342 1222 233566778888864444444666777
Q ss_pred HhhhCCeeEEeecc-----CCCcceeec--CCCcccCccCCCHHHHHHHHHHHHhcCCCCe---EEEEeC
Q 026121 104 YLETHGVCVAAYKT-----NEFPAFFTE--TSGSKVPCRVDSPEDCARLIDVNMKLKLGSG---LVIGVP 163 (243)
Q Consensus 104 ~LET~GV~V~gy~t-----d~fPaFy~~--~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g---~lvanP 163 (243)
.++..|+.|+.... ++|-....+ .++-+.=.---++++++.+++.-.++|+.+- .++++.
T Consensus 146 ~~~~~g~~v~~~~~~~~~~~d~~~~L~~ik~~~~~~iil~~~~~~~~~il~qa~~~gm~~~~y~~il~~~ 215 (371)
T cd06388 146 KAGQNGWQVSAICVENFNDASYRRLLEDLDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANL 215 (371)
T ss_pred hhHhcCCeeeeEEeccCCcHHHHHHHHHhcccccEEEEEECCHHHHHHHHHHHHhcCccccceEEEEccC
Confidence 78888988775332 233333222 2222221222367899999999999999766 456665
No 228
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=24.52 E-value=75 Score=25.20 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=30.5
Q ss_pred chhhhcC---CCeEEEecccccccchhhhHhHhhhCCeeEEee
Q 026121 76 DLTELGR---TPVAVVSAGIKSILDIPRTLEYLETHGVCVAAY 115 (243)
Q Consensus 76 DL~eL~r---tpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy 115 (243)
||.++-. -.++|+.+|.+-..--|...++|..+|+.|---
T Consensus 43 ~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m 85 (109)
T cd00248 43 ALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVM 85 (109)
T ss_pred HHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEe
Confidence 4444443 349999999998777788889999999987643
No 229
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=24.42 E-value=71 Score=29.08 Aligned_cols=44 Identities=16% Similarity=0.300 Sum_probs=37.0
Q ss_pred ccccchhhhc-CCCeEEEecccc---cccchhhhHhHhhhCCeeEEee
Q 026121 72 DISSDLTELG-RTPVAVVSAGIK---SILDIPRTLEYLETHGVCVAAY 115 (243)
Q Consensus 72 DiSaDL~eL~-rtpV~VVcaG~K---sILDi~~TLE~LET~GV~V~gy 115 (243)
.-|-||.+|+ -+|++|+|-=.. ++++.+.-.+|=+.+|.|++..
T Consensus 156 EaavdLa~lAGl~p~~vicEil~~dG~ma~~~~l~~fA~~h~l~~isi 203 (218)
T PRK00910 156 EGTVDLMQMAGLQPAGVLCELTNPDGTMAKTPEIIAFGKLHNMPVLTI 203 (218)
T ss_pred HHHHHHHHHcCCCceEEEEEEecCCCCcCCHHHHHHHHHHcCCcEEEH
Confidence 5677999999 469999996444 5999999999999999999864
No 230
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=24.40 E-value=1e+02 Score=28.91 Aligned_cols=53 Identities=30% Similarity=0.182 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCCcccccccchHHH------HhcC----------CCchhhHHHHHHHHHHCCCcEEEecc
Q 026121 5 TEELERLAKLGSKAQKTARRDIAHV------VATR----------GNGATTVSATMFFASMVGIPVFVTGG 59 (243)
Q Consensus 5 ~~ele~la~~~~~~~K~SrRDl~~~------~a~~----------~~GaTTVaaTm~lA~~aGI~VFaTGG 59 (243)
.+.|+++.. +++.-+||+|+..- .|.+ -..|||=+.-++-|+..||+|=+-=|
T Consensus 43 ~e~le~~~g--kev~~~~R~dlE~~~~~il~~a~~~~Vall~~GDpmvATTH~~L~~~A~~~Gi~v~vIh~ 111 (260)
T COG1798 43 LEKLEELIG--KEVILLDREDLEENSRSILDRAKDKDVALLVAGDPMVATTHVDLRIEAKRRGIEVRVIHG 111 (260)
T ss_pred HHHHHHHhC--CceEeccHHHHhhcchhHHHHHhcCCEEEEecCCcceehhHHHHHHHHHHcCCcEEEEcc
Confidence 678888874 68999999998874 2222 34789999999999999999877543
No 231
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=24.38 E-value=5.5e+02 Score=25.17 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=11.0
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 026121 171 SGRVIESAIQSALREARE 188 (243)
Q Consensus 171 ~~~~i~~~I~~Al~ea~~ 188 (243)
+.++++.+++.+..++..
T Consensus 173 ~~~eL~~a~~~~~~~a~~ 190 (478)
T PRK08463 173 KEEDLENAFESCKREALA 190 (478)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 456777777766555543
No 232
>PF04993 TfoX_N: TfoX N-terminal domain; InterPro: IPR007076 This domain is found in a number of bacterial proteins including the TfoX gene product of Haemophilus influenzae. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes []. This family corresponds to the N-terminal presumed domain of TfoX. The domain is found in association with the C-terminal domain in some, but not all members of this group, suggesting this is an autonomous and functionally unrelated domain.; PDB: 2OD0_A.
Probab=24.32 E-value=46 Score=25.36 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=16.9
Q ss_pred CCcCCCCChHHHHHHHHHHHHHHHH
Q 026121 164 IPREHAASGRVIESAIQSALREARE 188 (243)
Q Consensus 164 iP~e~~~~~~~i~~~I~~Al~ea~~ 188 (243)
||++.--|.+.+.+|+++|+++|.+
T Consensus 73 vp~~~~~d~~~l~~w~~~al~~a~r 97 (97)
T PF04993_consen 73 VPEEILEDDEELRQWIRLALAAAKR 97 (97)
T ss_dssp --HHHHC-HHHHHHHHHHHHHHHH-
T ss_pred eCHHHccCHHHHHHHHHHHHHHhcC
Confidence 4555556888899999999988864
No 233
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=24.17 E-value=83 Score=27.98 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=35.7
Q ss_pred cccccchhhhcC-CCeEEEecc---cccccchhhhHhHhhhCCeeEEee
Q 026121 71 MDISSDLTELGR-TPVAVVSAG---IKSILDIPRTLEYLETHGVCVAAY 115 (243)
Q Consensus 71 ~DiSaDL~eL~r-tpV~VVcaG---~KsILDi~~TLE~LET~GV~V~gy 115 (243)
-.-|-||.+|+. .|++|+|-= --.+++.+.-.+|=+.+|.|++..
T Consensus 139 tEaavdLa~lAGl~p~avi~eil~~dG~~~~~~~~~~fA~~~~l~~vsi 187 (194)
T PF00926_consen 139 TEAAVDLARLAGLSPVAVICEILDDDGDMARRDELEEFAKKHGLPIVSI 187 (194)
T ss_dssp HHHHHHHHHHTTS-SBEEEEEBBETTSSBHCHHHHHHHHHHTT-EEEEH
T ss_pred HHHHHHHHHHhCCCCcEEEEEEeCCCCCcCCHHHHHHHHHHcCCcEEEH
Confidence 367889999988 599999942 237889999999999999999864
No 234
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=24.12 E-value=65 Score=28.13 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=36.9
Q ss_pred ccccCCCccccccccchhhhcCCCeEEEeccccc-ccchhhhHhHhhhCCeeEEee
Q 026121 61 GGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKS-ILDIPRTLEYLETHGVCVAAY 115 (243)
Q Consensus 61 GGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~Ks-ILDi~~TLE~LET~GV~V~gy 115 (243)
.|++..--.+-+.-+++..=++-|+++|-.|++. ==-..+-.|..|..|.||+.=
T Consensus 14 ~g~~~a~~~~p~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT 69 (171)
T PRK00945 14 SGPKHAKIVSPKIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAAT 69 (171)
T ss_pred cCcccccccCHHHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEc
Confidence 4454443345566667777788899999988876 111334677888899998853
No 235
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.09 E-value=4.6e+02 Score=23.28 Aligned_cols=117 Identities=16% Similarity=0.107 Sum_probs=63.7
Q ss_pred HHHHHHHHCCCcEEEecccccccC-CCcccccccc----------ch--hhhcCCCeEEEecccccccchhh-hHhHhhh
Q 026121 42 ATMFFASMVGIPVFVTGGIGGVHR-HGEHTMDISS----------DL--TELGRTPVAVVSAGIKSILDIPR-TLEYLET 107 (243)
Q Consensus 42 aTm~lA~~aGI~VFaTGGIGGVHr-gae~t~DiSa----------DL--~eL~rtpV~VVcaG~KsILDi~~-TLE~LET 107 (243)
+..-+++..+|++|..+....... ...-.|..+. +. .+++...|+++...--.-.+.-. ..+.|+.
T Consensus 82 a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~ 161 (340)
T cd06349 82 AASPIYQRAGLVQLSPTNSHPDFTKGGDFIFRNSTSQAIEAPLLADYAVKDLGFKKVAILSVNTDWGRTSADIFVKAAEK 161 (340)
T ss_pred HhHHHHHhCCCeEEecCCCCCccccCCCeEEEccCCcHHHHHHHHHHHHHHcCCcEEEEEecCChHhHHHHHHHHHHHHH
Confidence 445677889999997554322111 1122232222 22 23455678887765544444444 4478899
Q ss_pred CCeeEEeec-----cCCCcceeec--CCCcccCccCCCHHHHHHHHHHHHhcCCCCeE
Q 026121 108 HGVCVAAYK-----TNEFPAFFTE--TSGSKVPCRVDSPEDCARLIDVNMKLKLGSGL 158 (243)
Q Consensus 108 ~GV~V~gy~-----td~fPaFy~~--~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~ 158 (243)
.|+.|++.. +.+|-....+ .++-.+=+-.-...+++.++++-++.|+..-+
T Consensus 162 ~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (340)
T cd06349 162 LGGQVVAHEEYVPGEKDFRPTITRLRDANPDAIILISYYNDGAPIARQARAVGLDIPV 219 (340)
T ss_pred cCCEEEEEEEeCCCCCcHHHHHHHHHhcCCCEEEEccccchHHHHHHHHHHcCCCCcE
Confidence 999999753 2334433322 22222222333556777778777777776443
No 236
>PRK11260 cystine transporter subunit; Provisional
Probab=24.04 E-value=83 Score=27.31 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=25.1
Q ss_pred ccchhhhHhHhhhCCeeEEeeccCCCcceeecCCC
Q 026121 95 ILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSG 129 (243)
Q Consensus 95 ILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg 129 (243)
.++=+.++++++..|+-.+||..+.+|=.|...+|
T Consensus 27 ~~~~~~~l~~i~~~~~l~v~~~~~~~P~~~~~~~g 61 (266)
T PRK11260 27 SFADEGLLNKVKERGTLLVGLEGTYPPFSFQGEDG 61 (266)
T ss_pred cccCcccHHHhhcCCeEEEEeCCCcCCceEECCCC
Confidence 35557899999999999999876555543544444
No 237
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=23.95 E-value=2.6e+02 Score=23.77 Aligned_cols=11 Identities=45% Similarity=0.679 Sum_probs=9.7
Q ss_pred cEEEecccccc
Q 026121 53 PVFVTGGIGGV 63 (243)
Q Consensus 53 ~VFaTGGIGGV 63 (243)
+|++|||-||+
T Consensus 2 ~vlItGasg~i 12 (248)
T PRK10538 2 IVLVTGATAGF 12 (248)
T ss_pred EEEEECCCchH
Confidence 48999999998
No 238
>PRK09134 short chain dehydrogenase; Provisional
Probab=23.93 E-value=4.5e+02 Score=22.33 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.2
Q ss_pred CCCcEEEecccccccC
Q 026121 50 VGIPVFVTGGIGGVHR 65 (243)
Q Consensus 50 aGI~VFaTGGIGGVHr 65 (243)
.|-.+++|||-||+.+
T Consensus 8 ~~k~vlItGas~giG~ 23 (258)
T PRK09134 8 APRAALVTGAARRIGR 23 (258)
T ss_pred CCCEEEEeCCCcHHHH
Confidence 4567999999999965
No 239
>PRK05867 short chain dehydrogenase; Provisional
Probab=23.83 E-value=4.5e+02 Score=22.27 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=12.6
Q ss_pred HCCCcEEEecccccccC
Q 026121 49 MVGIPVFVTGGIGGVHR 65 (243)
Q Consensus 49 ~aGI~VFaTGGIGGVHr 65 (243)
+.|=.+++|||-||+-+
T Consensus 7 ~~~k~vlVtGas~gIG~ 23 (253)
T PRK05867 7 LHGKRALITGASTGIGK 23 (253)
T ss_pred CCCCEEEEECCCchHHH
Confidence 34556999999999843
No 240
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=23.55 E-value=1.3e+02 Score=30.17 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEec
Q 026121 2 RLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTG 58 (243)
Q Consensus 2 GLs~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTG 58 (243)
|-+..-++.|..-..+.+|+++.=+. -+......-..+.+...+|+..||+|.|+|
T Consensus 700 g~~~~~~~~l~~l~~d~iKid~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~via~g 755 (799)
T PRK11359 700 GTGFSGLSRLVSLPVTEIKIDKSFVD-RCLTEKRILALLEAITSIGQSLNLTVVAEG 755 (799)
T ss_pred CCchhhHHHHhhCCCCEEEECHHHHh-hcccChhHHHHHHHHHHHHHHCCCeEEEEc
Confidence 55667778887665678999965332 223344455678888999999999999984
No 241
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=23.54 E-value=5.5e+02 Score=23.52 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=33.5
Q ss_pred Eecccccc-----cCCCccccccccch-hhhcCC-CeEEEecccccccchhhhHhHhhhCCeeEEeec
Q 026121 56 VTGGIGGV-----HRHGEHTMDISSDL-TELGRT-PVAVVSAGIKSILDIPRTLEYLETHGVCVAAYK 116 (243)
Q Consensus 56 aTGGIGGV-----Hrgae~t~DiSaDL-~eL~rt-pV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~ 116 (243)
+.|||+|. -+..+...+.+.+. .+|-.. .|.+|. |.-| =.....+++++..+||+++..
T Consensus 32 a~GGI~Gr~ielv~~D~~~~p~~a~~~a~~Li~~~~V~~i~-~~~S-~~~~a~~~~~~~~~vp~i~~~ 97 (351)
T cd06334 32 EDGGINGVKLEWEECDTGYEVPRGVECYERLKGEDGAVAFQ-GWST-GITEALIPKIAADKIPLMSGS 97 (351)
T ss_pred HcCCcCCeEEEEEEecCCCCcHHHHHHHHHHhccCCcEEEe-cCcH-HHHHHhhHHHhhcCCcEEecc
Confidence 45788872 22322333333333 345555 466664 4322 223466789999999999875
No 242
>PRK08303 short chain dehydrogenase; Provisional
Probab=23.51 E-value=5.6e+02 Score=23.20 Aligned_cols=88 Identities=22% Similarity=0.227 Sum_probs=44.9
Q ss_pred HCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEeccccc-----cc----chhhhHhHhhhCCeeEEeeccCC
Q 026121 49 MVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKS-----IL----DIPRTLEYLETHGVCVAAYKTNE 119 (243)
Q Consensus 49 ~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~Ks-----IL----Di~~TLE~LET~GV~V~gy~td~ 119 (243)
+.|=.+++|||-+|+-+. +.. .|++...-|+..+-+. .+ .+..+.+.|+..|..+..+
T Consensus 6 l~~k~~lITGgs~GIG~a------ia~---~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---- 72 (305)
T PRK08303 6 LRGKVALVAGATRGAGRG------IAV---ELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAV---- 72 (305)
T ss_pred CCCCEEEEeCCCchHHHH------HHH---HHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEE----
Confidence 345679999999998442 222 2333333343333221 11 1233445555555444322
Q ss_pred CcceeecCCCcccCccCCCHHHHHHHHHHH-HhcCCCCeEEEEeC
Q 026121 120 FPAFFTETSGSKVPCRVDSPEDCARLIDVN-MKLKLGSGLVIGVP 163 (243)
Q Consensus 120 fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~-~~l~l~~g~lvanP 163 (243)
+.-+.+++++.+++..- ..+| +=-+||.|.
T Consensus 73 -------------~~Dv~~~~~v~~~~~~~~~~~g-~iDilVnnA 103 (305)
T PRK08303 73 -------------QVDHLVPEQVRALVERIDREQG-RLDILVNDI 103 (305)
T ss_pred -------------EcCCCCHHHHHHHHHHHHHHcC-CccEEEECC
Confidence 23455777887777643 3344 223577665
No 243
>TIGR01273 speA arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence.
Probab=23.26 E-value=3.9e+02 Score=27.84 Aligned_cols=121 Identities=19% Similarity=0.092 Sum_probs=72.4
Q ss_pred CeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEE-e
Q 026121 84 PVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIG-V 162 (243)
Q Consensus 84 pV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lva-n 162 (243)
+-.+||.|.|+-=+|...|+. +.-|+++=..+|+++|+..+.+...+++...-+.|- |
T Consensus 139 ~~~Ii~NG~K~~e~I~~Al~~---------------------~~lG~~v~IvIDs~~EL~~I~~~a~~~~~~~~IglRvn 197 (624)
T TIGR01273 139 GAPIVCNGYKDREYIELALIG---------------------RKLGHNVFIVIEKLSELDLVIEEAKKLGVKPKLGLRAR 197 (624)
T ss_pred CCEEEeCCCCCHHHHHHHHHh---------------------hhcCCCeEEEECCHHHHHHHHHHHHhcCCCceEEEEEe
Confidence 467899998765333333321 112333324789999999999988888766555443 3
Q ss_pred CC-------------CcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHH
Q 026121 163 PI-------------PREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAK 229 (243)
Q Consensus 163 Pi-------------P~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPflL~~i~elT~G~Sl~aNiaLv~nNA~laa~ 229 (243)
|- +..+-++.+++..+++.+.+.-....+.|=-++- + |=-.|+.-+++..+-+.+
T Consensus 198 l~~~~~g~~~~tgg~~SKFGl~~~ei~~~i~~lk~~~~l~~L~GLHfHi----------G--SQi~d~~~~~~ai~~~~~ 265 (624)
T TIGR01273 198 LASKGSGKWASSGGEKSKFGLSATQILEVVRLLEQNGLLDCLKLLHFHI----------G--SQISNIDDVKKGVREAAR 265 (624)
T ss_pred cCCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeC----------C--CCCCCHHHHHHHHHHHHH
Confidence 42 2456788888777665443221111122211111 1 112478888999999999
Q ss_pred HHHHHHHH
Q 026121 230 ISVALAQL 237 (243)
Q Consensus 230 IA~al~~~ 237 (243)
+..++.++
T Consensus 266 i~~eL~~~ 273 (624)
T TIGR01273 266 FYCELRKL 273 (624)
T ss_pred HHHHHHHc
Confidence 98888763
No 244
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=23.14 E-value=24 Score=31.64 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=27.4
Q ss_pred EEEecccccccCCCccccccccchhhh------cCCCeEEEecccccccch
Q 026121 54 VFVTGGIGGVHRHGEHTMDISSDLTEL------GRTPVAVVSAGIKSILDI 98 (243)
Q Consensus 54 VFaTGGIGGVHrgae~t~DiSaDL~eL------~rtpV~VVcaG~KsILDi 98 (243)
||..||.|+.. .|--+.+|.+| ..-||+-||.|+-.++..
T Consensus 100 v~iPGG~g~~~-----dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 100 VFIPGGHGALI-----GIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred EEECCCCCChh-----hcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 69999988642 23335556654 345999999999766653
No 245
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=23.14 E-value=5.8e+02 Score=23.27 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=42.0
Q ss_pred HHHHHHCCCcEEEecccccccCCCc-------------ccccc-ccch-hhhcCCC-eEEEecccc-cccchhhhHhHhh
Q 026121 44 MFFASMVGIPVFVTGGIGGVHRHGE-------------HTMDI-SSDL-TELGRTP-VAVVSAGIK-SILDIPRTLEYLE 106 (243)
Q Consensus 44 m~lA~~aGI~VFaTGGIGGVHrgae-------------~t~Di-SaDL-~eL~rtp-V~VVcaG~K-sILDi~~TLE~LE 106 (243)
-..|+..||++|.|- |--.. -++|+ ..|| .++++|. -++++.|.- ++=|+...+|++.
T Consensus 82 ~~~~~~~Gl~~~t~~-----~d~~~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~ 156 (260)
T TIGR01361 82 RRAADEHGLPVVTEV-----MDPRDVEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYIL 156 (260)
T ss_pred HHHHHHhCCCEEEee-----CChhhHHHHHhhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHH
Confidence 345888899998863 22100 01121 1233 4477776 677899977 8999999999999
Q ss_pred hCCee
Q 026121 107 THGVC 111 (243)
Q Consensus 107 T~GV~ 111 (243)
..|-+
T Consensus 157 ~~Gn~ 161 (260)
T TIGR01361 157 SSGNG 161 (260)
T ss_pred HcCCC
Confidence 98874
No 246
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=23.13 E-value=2.6e+02 Score=24.67 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=48.6
Q ss_pred chhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeC-CC-c-CCCCChH
Q 026121 97 DIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVP-IP-R-EHAASGR 173 (243)
Q Consensus 97 Di~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanP-iP-~-e~~~~~~ 173 (243)
++..-...|+..|+.|.++.+..+-. |.-.+. ....|-...+.+-+.++.-..||.+. +++.-+ .+ . ...-..+
T Consensus 53 ~~~~~~~~l~~~gl~i~~~~~~~~~~-~~l~~~-~~~~r~~~~~~~~~~i~~a~~lG~~~-v~~~~~~~~~~~~~~~~~~ 129 (279)
T TIGR00542 53 QRLALVNAIIETGVRIPSMCLSAHRR-FPLGSK-DKAVRQQGLEIMEKAIQLARDLGIRT-IQLAGYDVYYEEHDEETRR 129 (279)
T ss_pred HHHHHHHHHHHcCCCceeeecCCCcc-CcCCCc-CHHHHHHHHHHHHHHHHHHHHhCCCE-EEecCcccccCcCCHHHHH
Confidence 45556678999999999886431101 111110 01112223445667777778888653 233211 11 1 1111123
Q ss_pred HHHHHHHHHHHHHHHcCCC
Q 026121 174 VIESAIQSALREAREKNIT 192 (243)
Q Consensus 174 ~i~~~I~~Al~ea~~~gi~ 192 (243)
.+.+.+++....|++.||+
T Consensus 130 ~~~~~l~~l~~~A~~~Gv~ 148 (279)
T TIGR00542 130 RFREGLKEAVELAARAQVT 148 (279)
T ss_pred HHHHHHHHHHHHHHHcCCE
Confidence 3445567778888898984
No 247
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=23.13 E-value=1.2e+02 Score=24.12 Aligned_cols=95 Identities=19% Similarity=0.198 Sum_probs=53.8
Q ss_pred ccccccchhhhcCCCeEEEecccc---cccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHH
Q 026121 70 TMDISSDLTELGRTPVAVVSAGIK---SILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLI 146 (243)
Q Consensus 70 t~DiSaDL~eL~rtpV~VVcaG~K---sILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~ 146 (243)
..|--.+|-.-+..|.+|+|-|.. .+=.-..--+||..+|||.-- . +.-|...+|.+++....
T Consensus 22 R~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~--------I------~~e~~s~~T~ena~~~~ 87 (150)
T cd06259 22 RLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEA--------I------LLEDRSTNTYENARFSA 87 (150)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHH--------e------eecCCCCCHHHHHHHHH
Confidence 344455566666666777766654 234445567889999985211 1 11233444566655555
Q ss_pred HHHHhcCCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCC
Q 026121 147 DVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNI 191 (243)
Q Consensus 147 ~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~gi 191 (243)
..-++.+..+-+||+.|. ...+|...++..+.
T Consensus 88 ~~~~~~~~~~i~lVTs~~-------------H~~Ra~~~~~~~~~ 119 (150)
T cd06259 88 ELLRERGIRSVLLVTSAY-------------HMPRALLIFRKAGL 119 (150)
T ss_pred HHHHhcCCCeEEEECCHH-------------HHHHHHHHHHHcCC
Confidence 555555666777776652 34456666666554
No 248
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=23.12 E-value=5.9e+02 Score=25.01 Aligned_cols=91 Identities=11% Similarity=0.089 Sum_probs=55.6
Q ss_pred cCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEE
Q 026121 81 GRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVI 160 (243)
Q Consensus 81 ~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lv 160 (243)
.+.+|.+|-+|...- .+-+.|+.-...|..++||=.|+ | ..|.++|. ..+.+++.++++.+ + -.-++|
T Consensus 142 ~~rrVLIvGaG~~g~-~l~~~L~~~~~~g~~vVGfiDdd-~-----~~g~~Vpv-lG~~~dL~~~v~~~---~-IdeViI 209 (463)
T PRK10124 142 NKRMVAVAGDLPAGQ-MLLESFRNEPWLGFEVVGVYHDP-K-----PGGVSNDW-AGNLQQLVEDAKAG---K-IHNVYI 209 (463)
T ss_pred CCCcEEEEECCHHHH-HHHHHHhcCccCCeEEEEEEeCC-c-----cccCCCCc-CCCHHHHHHHHHhC---C-CCEEEE
Confidence 346799999997653 33344443345689999987554 2 23566663 66778888777553 2 356677
Q ss_pred EeCCCcCCCCChHHHHHHHHHHHHHHHHcCCC
Q 026121 161 GVPIPREHAASGRVIESAIQSALREAREKNIT 192 (243)
Q Consensus 161 anPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~ 192 (243)
+.|- .+.+.+++ -+.++++.+++
T Consensus 210 Aip~-----~~~~~l~e----ll~~~~~~~v~ 232 (463)
T PRK10124 210 AMSM-----CDGARVKK----LVRQLADTTCS 232 (463)
T ss_pred eCCC-----cchHHHHH----HHHHHHHcCCe
Confidence 7663 23455555 44555666664
No 249
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=22.89 E-value=3.9e+02 Score=21.24 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=22.4
Q ss_pred CCeEEEecccccccchhhhHhHhhhCCeeEEeecc
Q 026121 83 TPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKT 117 (243)
Q Consensus 83 tpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t 117 (243)
.+.+|+..+..... ...++++...|+|++.+..
T Consensus 58 ~~d~ii~~~~~~~~--~~~~~~~~~~~ip~v~~~~ 90 (269)
T cd01391 58 GVDGIIGPPSSSSA--LAVVELAAAAGIPVVSLDA 90 (269)
T ss_pred CCCEEEecCCCHHH--HHHHHHHHHcCCcEEEecC
Confidence 35566666554322 2267889999999999974
No 250
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=22.73 E-value=3.1e+02 Score=21.98 Aligned_cols=79 Identities=13% Similarity=0.086 Sum_probs=45.3
Q ss_pred HHHHHHHHHHCCCcEEEecccccccCCC-ccccccccchhhhc--CCCeEEEeccc--ccccchhhhHhHhh---hCCee
Q 026121 40 VSATMFFASMVGIPVFVTGGIGGVHRHG-EHTMDISSDLTELG--RTPVAVVSAGI--KSILDIPRTLEYLE---THGVC 111 (243)
Q Consensus 40 VaaTm~lA~~aGI~VFaTGGIGGVHrga-e~t~DiSaDL~eL~--rtpV~VVcaG~--KsILDi~~TLE~LE---T~GV~ 111 (243)
+.+.+-+-+.+|++|..-..-||...+. ..++....++.++. +...++|+.|. +...+-+..+++|. .+|.|
T Consensus 15 ~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~ 94 (166)
T TIGR01382 15 LLYPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKP 94 (166)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCE
Confidence 4444555567889887666556543321 11233333344433 46788888883 22223355566655 57899
Q ss_pred EEeeccC
Q 026121 112 VAAYKTN 118 (243)
Q Consensus 112 V~gy~td 118 (243)
+.+..+.
T Consensus 95 i~~ic~G 101 (166)
T TIGR01382 95 VAAICHG 101 (166)
T ss_pred EEEEChH
Confidence 9988753
No 251
>PLN02335 anthranilate synthase
Probab=22.70 E-value=62 Score=28.60 Aligned_cols=33 Identities=18% Similarity=0.080 Sum_probs=26.4
Q ss_pred CeEEEecccccccchhhhHhHhhhCC--eeEEeec
Q 026121 84 PVAVVSAGIKSILDIPRTLEYLETHG--VCVAAYK 116 (243)
Q Consensus 84 pV~VVcaG~KsILDi~~TLE~LET~G--V~V~gy~ 116 (243)
.-+|++-|+.+--|.+..+++++..| +||+|..
T Consensus 64 d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGIC 98 (222)
T PLN02335 64 RGVLISPGPGTPQDSGISLQTVLELGPLVPLFGVC 98 (222)
T ss_pred CEEEEcCCCCChhhccchHHHHHHhCCCCCEEEec
Confidence 37888899999988888888777665 8998874
No 252
>PRK07094 biotin synthase; Provisional
Probab=22.70 E-value=5.8e+02 Score=23.16 Aligned_cols=52 Identities=12% Similarity=0.147 Sum_probs=32.4
Q ss_pred ccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccC-ccCCCHHHHHHHHHHHHhc
Q 026121 95 ILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVP-CRVDSPEDCARLIDVNMKL 152 (243)
Q Consensus 95 ILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~-~r~d~~~e~A~~~~~~~~l 152 (243)
.=|+..|++++...++..+++.. |.+..|-+.- ....++++..+++..-+.+
T Consensus 194 ~ed~~~~l~~l~~l~~~~v~~~~------~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~ 246 (323)
T PRK07094 194 LEDLADDILFLKELDLDMIGIGP------FIPHPDTPLKDEKGGSLELTLKVLALLRLL 246 (323)
T ss_pred HHHHHHHHHHHHhCCCCeeeeec------cccCCCCCcccCCCCCHHHHHHHHHHHHHh
Confidence 34777899999999988777752 2222221110 1234688888888766554
No 253
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=22.69 E-value=96 Score=27.99 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=35.4
Q ss_pred ccccchhhhcC-CCeEEEecc---cccccchhhhHhHhhhCCeeEEee
Q 026121 72 DISSDLTELGR-TPVAVVSAG---IKSILDIPRTLEYLETHGVCVAAY 115 (243)
Q Consensus 72 DiSaDL~eL~r-tpV~VVcaG---~KsILDi~~TLE~LET~GV~V~gy 115 (243)
.-|-||..|+. .|++|+|-= -.++.+.+.-.+|=+.+|.|++.-
T Consensus 155 EaavdLa~lAgl~P~avi~ei~~~~G~~~~~~~~~~fA~~~~l~~v~i 202 (217)
T PRK03353 155 EATIDLMTLAGLKPAGVLCELTNDDGTMARAPECIAFAKQHNMPVLTI 202 (217)
T ss_pred HHHHHHHHHcCCCceEEEEEeecCCCCcccHHHHHHHHHHcCCcEEEH
Confidence 45789999996 499999951 125777999999999999999764
No 254
>TIGR03868 F420-O_ABCperi proposed F420-0 ABC transporter, periplasmic F420-0 binding protein. This small clade of ABC-type transporter periplasmic binding protein components is found as a three gene cassette along with a permease (TIGR03869) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this periplasmic binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=22.53 E-value=68 Score=28.19 Aligned_cols=50 Identities=8% Similarity=-0.108 Sum_probs=29.9
Q ss_pred cchhhhcCC--CeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCccee
Q 026121 75 SDLTELGRT--PVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFF 124 (243)
Q Consensus 75 aDL~eL~rt--pV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy 124 (243)
.|+..|... .+++++.+....-+-+...|-|+..|+||+-+.+..+..+|
T Consensus 69 ~n~E~i~~l~PDlvi~~~~~~~~~~~~~~~~~l~~~gipv~~~p~~~~~~~~ 120 (287)
T TIGR03868 69 PSPEAVLETEPDLVYAGWESNLTAEGAGERADLASLGVNTYVAPSACKEDGY 120 (287)
T ss_pred CCHhHhhcCCCCEEEeccccccCCCCCCCHHHHHHCCCeEEECccccccccC
Confidence 355554433 35555444433334457789999999999977554444444
No 255
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=22.51 E-value=4.4e+02 Score=22.96 Aligned_cols=141 Identities=16% Similarity=0.102 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHCC-CcEEEecccccccCCCccccccccchhhhcCC--CeEEEecccccccchh---hhHhHhhhCCeeE
Q 026121 39 TVSATMFFASMVG-IPVFVTGGIGGVHRHGEHTMDISSDLTELGRT--PVAVVSAGIKSILDIP---RTLEYLETHGVCV 112 (243)
Q Consensus 39 TVaaTm~lA~~aG-I~VFaTGGIGGVHrgae~t~DiSaDL~eL~rt--pV~VVcaG~KsILDi~---~TLE~LET~GV~V 112 (243)
.+-..|.-+...| |+-+-.. +++ ...|.++-+. +-..|.--.-+.++-. .-+++...+|++|
T Consensus 128 ~~~~~l~~l~~~G~ir~iGvS-----------~~~-~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v 195 (285)
T cd06660 128 ETLRALEELVKEGKIRAIGVS-----------NFS-AEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGV 195 (285)
T ss_pred HHHHHHHHHHHcCCccEEEee-----------CCC-HHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEE
Confidence 3445667777777 3333221 222 2333344333 3333344444555544 3789999999999
Q ss_pred EeeccCCCcceeecCCCccc---CccCCCHHHHH-------HHHHHHHhcCCCCeEEEEeCCCcCCCCChHHHHHHHHHH
Q 026121 113 AAYKTNEFPAFFTETSGSKV---PCRVDSPEDCA-------RLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSA 182 (243)
Q Consensus 113 ~gy~td~fPaFy~~~Sg~~~---~~r~d~~~e~A-------~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~I~~A 182 (243)
++|.+=.--.+..+.....- ..+......++ .-+.-+|.+..+++..+ ||- .-..+.+++.++.+
T Consensus 196 ~~~~~l~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~---i~g--~~~~~~l~~n~~~~ 270 (285)
T cd06660 196 IAYSPLAGGLLTGKYLPGAPPPEGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSV---IPG--ASSPERLEENLAAL 270 (285)
T ss_pred EEeccccCceecCCCCCCCCCChhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEE---EeC--CCCHHHHHHHHhhc
Confidence 99985321111111111100 00000011111 11334567766544332 332 23456666555433
Q ss_pred HHHHHHcCCCCccCChHHHHHHHH
Q 026121 183 LREAREKNITGNAETPFLLARVNE 206 (243)
Q Consensus 183 l~ea~~~gi~Gk~vTPflL~~i~e 206 (243)
+..+||--+++|++
T Consensus 271 ----------~~~L~~~~~~~l~~ 284 (285)
T cd06660 271 ----------DFELSDEDLAALDA 284 (285)
T ss_pred ----------cCCCCHHHHHHHhh
Confidence 57888888887765
No 256
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=22.50 E-value=1e+02 Score=22.79 Aligned_cols=84 Identities=19% Similarity=0.134 Sum_probs=46.4
Q ss_pred CCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCcccccc-ccchhhh-
Q 026121 3 LSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDI-SSDLTEL- 80 (243)
Q Consensus 3 Ls~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~Di-SaDL~eL- 80 (243)
++.+|+..+-+.++++.=+.-|+-...-.....|+..+.-..+.... ++. ..-+.+|
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~---------------------~~~~~~~~~~~~ 59 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDF---------------------LEIEEDILDQLP 59 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHH---------------------HHhhHHHHhhCC
Confidence 46788887655434566788888555444444554333221111000 000 0112233
Q ss_pred cCCCeEEEecc-cccccchhhhHhHhhhCCee
Q 026121 81 GRTPVAVVSAG-IKSILDIPRTLEYLETHGVC 111 (243)
Q Consensus 81 ~rtpV~VVcaG-~KsILDi~~TLE~LET~GV~ 111 (243)
...||+|+|.+ ..| ..+...|..+|..
T Consensus 60 ~~~~ivv~C~~G~rs----~~aa~~L~~~G~~ 87 (100)
T cd01523 60 DDQEVTVICAKEGSS----QFVAELLAERGYD 87 (100)
T ss_pred CCCeEEEEcCCCCcH----HHHHHHHHHcCce
Confidence 34689999985 443 5677789999987
No 257
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=22.49 E-value=94 Score=29.33 Aligned_cols=76 Identities=22% Similarity=0.263 Sum_probs=52.8
Q ss_pred EEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCe-EEEEeCC
Q 026121 86 AVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSG-LVIGVPI 164 (243)
Q Consensus 86 ~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g-~lvanPi 164 (243)
+|=|.|-+ ++-.|.++|-..||||+|- -.--|.....--|||+-.|- .+++.++++.-.+|.=-+. .++.--|
T Consensus 110 aVKlEGG~---~~~~~i~~L~~~gIPV~gH-iGLtPQ~v~~~GGykvqGr~--~~~a~~l~~dA~ale~AGaf~ivlE~V 183 (268)
T COG0413 110 AVKLEGGE---EMAETIKRLTERGIPVMGH-IGLTPQSVNWLGGYKVQGRT--EESAEKLLEDAKALEEAGAFALVLECV 183 (268)
T ss_pred EEEEcCCH---HHHHHHHHHHHcCCceEEE-ecCChhhhhccCCeeeecCC--HHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 45555553 4567899999999999985 22458888888999998875 4788888877776654444 3444455
Q ss_pred CcC
Q 026121 165 PRE 167 (243)
Q Consensus 165 P~e 167 (243)
|++
T Consensus 184 p~~ 186 (268)
T COG0413 184 PAE 186 (268)
T ss_pred HHH
Confidence 553
No 258
>PRK06182 short chain dehydrogenase; Validated
Probab=22.44 E-value=3.3e+02 Score=23.47 Aligned_cols=30 Identities=7% Similarity=0.029 Sum_probs=16.9
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCeEEEEeC
Q 026121 134 CRVDSPEDCARLIDVNMKLKLGSGLVIGVP 163 (243)
Q Consensus 134 ~r~d~~~e~A~~~~~~~~l~l~~g~lvanP 163 (243)
+.+.+++++.+++..-.+...+--+||.|.
T Consensus 53 ~Dv~~~~~~~~~~~~~~~~~~~id~li~~a 82 (273)
T PRK06182 53 LDVTDEASIKAAVDTIIAEEGRIDVLVNNA 82 (273)
T ss_pred eeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 456688888877764433222233566654
No 259
>PRK14030 glutamate dehydrogenase; Provisional
Probab=22.36 E-value=1.3e+02 Score=30.00 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhc
Q 026121 2 RLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELG 81 (243)
Q Consensus 2 GLs~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~ 81 (243)
||+.+++..|.+. |-+.+.+..-...+..|++.++.--++. ....||+=+.++++=.. .+...|-
T Consensus 269 Gld~~~l~~l~~~-----k~~~~~~~~~~~~~~~ga~~i~~~~~~~--~~cDVliPcAl~n~I~~--------~na~~l~ 333 (445)
T PRK14030 269 GISGEKIDYMLEL-----RASGNDIVAPYAEKFPGSTFFAGKKPWE--QKVDIALPCATQNELNG--------EDADKLI 333 (445)
T ss_pred CCCHHHHHHHHHH-----HHhcCccHHHHHhcCCCCEEcCCcccee--ccccEEeeccccccCCH--------HHHHHHH
Confidence 6777776655432 2222333211223444666565433332 46678999999875321 2334565
Q ss_pred CCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCc
Q 026121 82 RTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPC 134 (243)
Q Consensus 82 rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~ 134 (243)
+...-+|+=|+.- +--|..-+.|+..||.|+ |.|+...-|+-+.|
T Consensus 334 ~~~ak~V~EgAN~-p~t~eA~~iL~~rGI~~v-------PD~~aNAGGVivs~ 378 (445)
T PRK14030 334 KNGVLCVAEVSNM-GCTAEAIDKFIAAKQLFA-------PGKAVNAGGVATSG 378 (445)
T ss_pred HcCCeEEEeCCCC-CCCHHHHHHHHHCCCEEe-------CcceecCCCeeeeh
Confidence 5567778888876 777788899999999987 99999999988865
No 260
>PRK06179 short chain dehydrogenase; Provisional
Probab=22.33 E-value=5e+02 Score=22.19 Aligned_cols=30 Identities=7% Similarity=0.048 Sum_probs=17.6
Q ss_pred CccCCCHHHHHHHHHHH-HhcCCCCeEEEEeC
Q 026121 133 PCRVDSPEDCARLIDVN-MKLKLGSGLVIGVP 163 (243)
Q Consensus 133 ~~r~d~~~e~A~~~~~~-~~l~l~~g~lvanP 163 (243)
+.-+.+++++.+++..- ..+|- --+||.|.
T Consensus 51 ~~D~~d~~~~~~~~~~~~~~~g~-~d~li~~a 81 (270)
T PRK06179 51 ELDVTDDASVQAAVDEVIARAGR-IDVLVNNA 81 (270)
T ss_pred EeecCCHHHHHHHHHHHHHhCCC-CCEEEECC
Confidence 34566888888877753 33443 33455554
No 261
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.33 E-value=1.1e+02 Score=21.38 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=23.9
Q ss_pred CCeEEEecccccccchhhhHhHhhhCCeeE--EeeccC
Q 026121 83 TPVAVVSAGIKSILDIPRTLEYLETHGVCV--AAYKTN 118 (243)
Q Consensus 83 tpV~VVcaG~KsILDi~~TLE~LET~GV~V--~gy~td 118 (243)
.=|+||....+.--=..+-++.|+..|++| +.|++.
T Consensus 2 a~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s 39 (65)
T cd04918 2 SIISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGAS 39 (65)
T ss_pred cEEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCc
Confidence 346666663332112458899999999999 777754
No 262
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=22.31 E-value=6.1e+02 Score=23.22 Aligned_cols=69 Identities=17% Similarity=0.135 Sum_probs=39.4
Q ss_pred HHHHHHHHCCC-cEEEecccccc-----cCCCccccccc-----cchhhhc--CCCeEEEecccccccchhhhHhHhhhC
Q 026121 42 ATMFFASMVGI-PVFVTGGIGGV-----HRHGEHTMDIS-----SDLTELG--RTPVAVVSAGIKSILDIPRTLEYLETH 108 (243)
Q Consensus 42 aTm~lA~~aGI-~VFaTGGIGGV-----Hrgae~t~DiS-----aDL~eL~--rtpV~VVcaG~KsILDi~~TLE~LET~ 108 (243)
.++.+|+..|. +|++|..---- .-|+...+|.. ..+.++. ...+++=|+|..+. +...++.|...
T Consensus 206 ~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~~~--~~~~~~~l~~~ 283 (371)
T cd08281 206 SALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSVPA--LETAYEITRRG 283 (371)
T ss_pred HHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCChHH--HHHHHHHHhcC
Confidence 45668888999 58888641100 00333444432 2233342 24577778886543 34567888888
Q ss_pred CeeE
Q 026121 109 GVCV 112 (243)
Q Consensus 109 GV~V 112 (243)
|.-|
T Consensus 284 G~iv 287 (371)
T cd08281 284 GTTV 287 (371)
T ss_pred CEEE
Confidence 8544
No 263
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=22.30 E-value=2.2e+02 Score=20.58 Aligned_cols=75 Identities=16% Similarity=0.065 Sum_probs=45.0
Q ss_pred CCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhc-
Q 026121 3 LSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELG- 81 (243)
Q Consensus 3 Ls~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~- 81 (243)
++++|++++.. ++.+-+.-|+-.........|+-.+.-..+-. .+..+.
T Consensus 1 ~~~~e~~~~~~--~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~----------------------------~~~~~~~ 50 (90)
T cd01524 1 VQWHELDNYRA--DGVTLIDVRTPQEFEKGHIKGAINIPLDELRD----------------------------RLNELPK 50 (90)
T ss_pred CCHHHHHHHhc--CCCEEEECCCHHHHhcCCCCCCEeCCHHHHHH----------------------------HHHhcCC
Confidence 57889998873 45678899987666555566655554322211 111122
Q ss_pred CCCeEEEecccccccchhhhHhHhhhCCe
Q 026121 82 RTPVAVVSAGIKSILDIPRTLEYLETHGV 110 (243)
Q Consensus 82 rtpV~VVcaG~KsILDi~~TLE~LET~GV 110 (243)
..||+++|...+. .....+.|+..|.
T Consensus 51 ~~~vvl~c~~g~~---a~~~a~~L~~~G~ 76 (90)
T cd01524 51 DKEIIVYCAVGLR---GYIAARILTQNGF 76 (90)
T ss_pred CCcEEEEcCCChh---HHHHHHHHHHCCC
Confidence 3689999976544 3344556666675
No 264
>PRK07023 short chain dehydrogenase; Provisional
Probab=22.27 E-value=4.5e+02 Score=22.07 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=11.0
Q ss_pred cEEEecccccccC
Q 026121 53 PVFVTGGIGGVHR 65 (243)
Q Consensus 53 ~VFaTGGIGGVHr 65 (243)
++++|||-||+-+
T Consensus 3 ~vlItGasggiG~ 15 (243)
T PRK07023 3 RAIVTGHSRGLGA 15 (243)
T ss_pred eEEEecCCcchHH
Confidence 5899999999854
No 265
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=22.27 E-value=1.8e+02 Score=27.27 Aligned_cols=87 Identities=18% Similarity=0.314 Sum_probs=49.1
Q ss_pred chHHHHhcCCCchhhHHHHHHHHHHCCCcEEEeccccccc-------CCC-----ccccccc----cchhhhcC--CCe-
Q 026121 25 DIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVH-------RHG-----EHTMDIS----SDLTELGR--TPV- 85 (243)
Q Consensus 25 Dl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVH-------rga-----e~t~DiS----aDL~eL~r--tpV- 85 (243)
|+|..+.....| +++ .+......+|++.+..+|-||-. |.. ....|.. .-|.+..+ .++
T Consensus 179 ~vPVivK~~g~g-~~~-~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ip 256 (333)
T TIGR02151 179 SVPVIVKEVGFG-ISK-EVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAP 256 (333)
T ss_pred CCCEEEEecCCC-CCH-HHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCe
Confidence 344444433345 343 56677778999999999988731 311 1112221 12323222 233
Q ss_pred EEEecccccccchhhhHhHhhhCCeeEEeecc
Q 026121 86 AVVSAGIKSILDIPRTLEYLETHGVCVAAYKT 117 (243)
Q Consensus 86 ~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t 117 (243)
++.+-|..+-.|+-+.|. .|.-.+++++
T Consensus 257 VIasGGI~~~~di~kaLa----lGAd~V~igr 284 (333)
T TIGR02151 257 IIASGGLRTGLDVAKAIA----LGADAVGMAR 284 (333)
T ss_pred EEEECCCCCHHHHHHHHH----hCCCeehhhH
Confidence 334556778888888776 5788887775
No 266
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=22.18 E-value=1.3e+02 Score=25.79 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=23.5
Q ss_pred CCcCCCCChHHHHHHHHHHHHHHHHcCC
Q 026121 164 IPREHAASGRVIESAIQSALREAREKNI 191 (243)
Q Consensus 164 iP~e~~~~~~~i~~~I~~Al~ea~~~gi 191 (243)
++....++-+..+++|.+|+++|+++|.
T Consensus 2 ~~t~~~Ls~e~a~~ii~aA~a~a~~~g~ 29 (141)
T COG3193 2 LKTKPVLSLELANKIIAAAVAEAQQLGV 29 (141)
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHhCC
Confidence 4455678999999999999999999954
No 267
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.07 E-value=3.8e+02 Score=25.28 Aligned_cols=88 Identities=14% Similarity=0.263 Sum_probs=59.1
Q ss_pred ccccchhhh----cCCC-eEEEecc--cccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHH
Q 026121 72 DISSDLTEL----GRTP-VAVVSAG--IKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCAR 144 (243)
Q Consensus 72 DiSaDL~eL----~rtp-V~VVcaG--~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~ 144 (243)
++..++.+| ++.| .++|..| +-|..=+.....+-|..|+.+--|. +|-.. +.+|+-+
T Consensus 16 ~i~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~---------------l~~~~-~~~el~~ 79 (295)
T PRK14174 16 ELKTRVEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIE---------------LPADT-TEEHLLK 79 (295)
T ss_pred HHHHHHHHHHHccCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEE---------------CCCCC-CHHHHHH
Confidence 344555555 5678 6677777 4577777888888899998876553 33332 4566666
Q ss_pred HHHHHHhcCCCCeEEEEeCCCcCCCCChHHHHH
Q 026121 145 LIDVNMKLKLGSGLVIGVPIPREHAASGRVIES 177 (243)
Q Consensus 145 ~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~ 177 (243)
.|+.-.+-.--.|++|-.|+|+ .+|...+..
T Consensus 80 ~I~~lN~D~~V~GIlvq~Plp~--~id~~~i~~ 110 (295)
T PRK14174 80 KIEDLNNDPDVHGILVQQPLPK--QIDEFAVTL 110 (295)
T ss_pred HHHHHhCCCCCCEEEEeCCCCC--CCCHHHHHh
Confidence 6665544444579999999997 577666544
No 268
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.03 E-value=1.4e+02 Score=19.54 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=26.2
Q ss_pred eEEEecccccccc-hhhhHhHhhhCCeeEEeecc
Q 026121 85 VAVVSAGIKSILD-IPRTLEYLETHGVCVAAYKT 117 (243)
Q Consensus 85 V~VVcaG~KsILD-i~~TLE~LET~GV~V~gy~t 117 (243)
|.|++.|.+..-+ ..+-+..|+..|++|..+.+
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEc
Confidence 6778777766655 46788999999999998874
No 269
>COG2378 Predicted transcriptional regulator [Transcription]
Probab=21.99 E-value=1.8e+02 Score=27.25 Aligned_cols=54 Identities=20% Similarity=0.188 Sum_probs=42.6
Q ss_pred hhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcC
Q 026121 98 IPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLK 153 (243)
Q Consensus 98 i~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~ 153 (243)
|-+-+..|+..|||+.| ..-..++|.-..|+++|-.+=|++|+..++.+-..+.
T Consensus 39 i~RDi~~L~~~gvPI~~--e~G~~~gy~~~~~~~L~pl~ft~~E~~Al~~~l~~l~ 92 (311)
T COG2378 39 IYRDIATLRAAGVPIEG--ERGKGGGYRLRPGFKLPPLMFTEEEAEALLLALRALA 92 (311)
T ss_pred HHHHHHHHHHCCCCeEe--ecCCCccEEEccCCCCCcccCCHHHHHHHHHHHHHHH
Confidence 34556789999999644 4455678889999999999999999999988766653
No 270
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.99 E-value=86 Score=22.51 Aligned_cols=21 Identities=33% Similarity=0.289 Sum_probs=18.6
Q ss_pred cchhhhHhHhhhCCeeEEeec
Q 026121 96 LDIPRTLEYLETHGVCVAAYK 116 (243)
Q Consensus 96 LDi~~TLE~LET~GV~V~gy~ 116 (243)
-||..+.++|+.+|+++..-.
T Consensus 76 ~di~~~~~~l~~~g~~~~~~~ 96 (119)
T cd07263 76 DDIDATYEELKARGVEFSEEP 96 (119)
T ss_pred hHHHHHHHHHHhCCCEEeecc
Confidence 489999999999999998755
No 271
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=21.97 E-value=1.9e+02 Score=25.03 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=26.2
Q ss_pred cEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEE
Q 026121 53 PVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVA 113 (243)
Q Consensus 53 ~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~ 113 (243)
+|++|||-|.+ |. -+..-|.+-+ ..|.++.-..-.+.|-..--+.|+...+-++
T Consensus 1 kilv~G~tG~i--G~----~l~~~l~~~g-~~v~~~~r~~~d~~~~~~~~~~~~~~~~d~v 54 (287)
T TIGR01214 1 RILITGANGQL--GR----ELVQQLSPEG-RVVVALTSSQLDLTDPEALERLLRAIRPDAV 54 (287)
T ss_pred CEEEEcCCCHH--HH----HHHHHHHhcC-CEEEEeCCcccCCCCHHHHHHHHHhCCCCEE
Confidence 58999999987 42 2333333332 3455554432344443333344544333333
No 272
>PRK13189 peroxiredoxin; Provisional
Probab=21.92 E-value=1.4e+02 Score=26.43 Aligned_cols=95 Identities=12% Similarity=0.166 Sum_probs=56.9
Q ss_pred ccccchhhhHhHhhhCCeeEEeeccCCCcc---eee---cCC--CcccCccCCCHHHHHHHHHHHHhc----CC------
Q 026121 93 KSILDIPRTLEYLETHGVCVAAYKTNEFPA---FFT---ETS--GSKVPCRVDSPEDCARLIDVNMKL----KL------ 154 (243)
Q Consensus 93 KsILDi~~TLE~LET~GV~V~gy~td~fPa---Fy~---~~S--g~~~~~r~d~~~e~A~~~~~~~~l----~l------ 154 (243)
+-|..+..-.+.++..||-|+|...|.-.. |-. ... +++.|.-.|.-.++++.+...... .+
T Consensus 53 tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfII 132 (222)
T PRK13189 53 TEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFII 132 (222)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEE
Confidence 457778888888899999999998764322 211 112 345555556666777765532111 11
Q ss_pred -CCeEE---EEeCCCcCCCCChHHHHHHHHHHHHHHHHcC
Q 026121 155 -GSGLV---IGVPIPREHAASGRVIESAIQSALREAREKN 190 (243)
Q Consensus 155 -~~g~l---vanPiP~e~~~~~~~i~~~I~~Al~ea~~~g 190 (243)
+.|.| ..+|.|... +-+++.++|+ |++..++.|
T Consensus 133 D~~G~Ir~~~~~~~~~gr--~~~eilr~l~-alq~~~~~~ 169 (222)
T PRK13189 133 DPKGIIRAILYYPQEVGR--NMDEILRLVK-ALQTSDEKG 169 (222)
T ss_pred CCCCeEEEEEecCCCCCC--CHHHHHHHHH-HhhhHhhcC
Confidence 23443 245666543 4567778775 577777765
No 273
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.86 E-value=5.8e+02 Score=22.83 Aligned_cols=93 Identities=11% Similarity=0.003 Sum_probs=51.4
Q ss_pred chhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCC-CeEEEEeCCCcCCCCChHHH
Q 026121 97 DIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLG-SGLVIGVPIPREHAASGRVI 175 (243)
Q Consensus 97 Di~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~-~g~lvanPiP~e~~~~~~~i 175 (243)
.+..++|++...|.-.+=+ |+++..... .+.-+++++.++-+...+.++. ..+.+--|-+-..+-+.+++
T Consensus 12 ~~~~a~~~~~~~G~~~~qi--------f~~~P~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iNlas~~~~~ 82 (274)
T TIGR00587 12 GLQAAYNRAAEIGATAFMF--------FLKSPRWWR-RPMLEEEVIDWFKAALETNKNLSQIVLVHAPYLINLASPDEEK 82 (274)
T ss_pred CHHHHHHHHHHhCCCEEEE--------EecCccccC-CCCCCHHHHHHHHHHHHHcCCCCcceeccCCeeeecCCCCHHH
Confidence 4677899999988766543 555544332 2344566666665555555544 22333333322222222222
Q ss_pred H----HHHHHHHHHHHHcCCCCccCCh
Q 026121 176 E----SAIQSALREAREKNITGNAETP 198 (243)
Q Consensus 176 ~----~~I~~Al~ea~~~gi~Gk~vTP 198 (243)
. +.+.++++.|++-|...=-++|
T Consensus 83 r~~sv~~~~~~i~~A~~lga~~vv~H~ 109 (274)
T TIGR00587 83 EEKSLDVLDEELKRCELLGIMLYNFHP 109 (274)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 2 3477788888888886545544
No 274
>PRK08265 short chain dehydrogenase; Provisional
Probab=21.85 E-value=3e+02 Score=23.71 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=12.2
Q ss_pred CCCcEEEecccccccC
Q 026121 50 VGIPVFVTGGIGGVHR 65 (243)
Q Consensus 50 aGI~VFaTGGIGGVHr 65 (243)
.|=.+++|||-||+-+
T Consensus 5 ~~k~vlItGas~gIG~ 20 (261)
T PRK08265 5 AGKVAIVTGGATLIGA 20 (261)
T ss_pred CCCEEEEECCCChHHH
Confidence 3457899999998844
No 275
>PLN02783 diacylglycerol O-acyltransferase
Probab=21.75 E-value=3.2e+02 Score=25.69 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=16.2
Q ss_pred CCeEEEEeCCCcCCCC--ChHHHHHHHH
Q 026121 155 GSGLVIGVPIPREHAA--SGRVIESAIQ 180 (243)
Q Consensus 155 ~~g~lvanPiP~e~~~--~~~~i~~~I~ 180 (243)
+--++|..||+-+... +.++++++-+
T Consensus 261 ~i~vvvG~PI~v~~~~~~~~e~v~~~~~ 288 (315)
T PLN02783 261 PMHVVVGKPIEVKKNPQPSQEEVAEVLE 288 (315)
T ss_pred eEEEEecCCccCCCCCCCCHHHHHHHHH
Confidence 3457888998755433 5566666543
No 276
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=21.74 E-value=86 Score=30.53 Aligned_cols=44 Identities=18% Similarity=0.362 Sum_probs=36.4
Q ss_pred ccccchhhhcCC-CeEEEeccc---ccccchhhhHhHhhhCCeeEEee
Q 026121 72 DISSDLTELGRT-PVAVVSAGI---KSILDIPRTLEYLETHGVCVAAY 115 (243)
Q Consensus 72 DiSaDL~eL~rt-pV~VVcaG~---KsILDi~~TLE~LET~GV~V~gy 115 (243)
.-|-||.+|+.. |++|+|-=. .++++.+.-.+|=+.+|.|++..
T Consensus 145 EaavdL~~lAgl~p~avi~ei~~~dg~m~~~~~~~~fA~~h~l~~i~i 192 (369)
T PRK12485 145 EAGCDLARLAGFSPASVIVEVMNDDGTMARRPDLEVFAAKHGIKIGTI 192 (369)
T ss_pred HHHHHHHHHcCCCceEEEEEEecCCCCccChHHHHHHHHHcCCcEEEH
Confidence 578899999964 999999822 35888999999999999998654
No 277
>PRK08462 biotin carboxylase; Validated
Probab=21.68 E-value=5.3e+02 Score=24.62 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=40.2
Q ss_pred hHhhhCCeeEEeecc-------C--CCcceeecCCCcccCc----cCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCC
Q 026121 103 EYLETHGVCVAAYKT-------N--EFPAFFTETSGSKVPC----RVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHA 169 (243)
Q Consensus 103 E~LET~GV~V~gy~t-------d--~fPaFy~~~Sg~~~~~----r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~ 169 (243)
+++|.+|++++|-.. | .+-.| ..+.|++.|. .+.+.+++.+.+. ++|.| +|.-|.-.--.
T Consensus 95 ~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~-l~~~gIp~pp~~~~~~~~~~~~~~~~~---~~g~P---vvvKP~~g~gs 167 (445)
T PRK08462 95 EICSHHNIKFIGPSVEVMALMSDKSKAKEV-MKRAGVPVIPGSDGALKSYEEAKKIAK---EIGYP---VILKAAAGGGG 167 (445)
T ss_pred HHHHHCCCeEECcCHHHHHHhCCHHHHHHH-HHHCCCCCCCCcccccCCHHHHHHHHH---HcCCC---EEEEeCCCCCC
Confidence 466777777665432 1 12222 3455666642 2456666555432 34433 44444332111
Q ss_pred ------CChHHHHHHHHHHHHHHHH
Q 026121 170 ------ASGRVIESAIQSALREARE 188 (243)
Q Consensus 170 ------~~~~~i~~~I~~Al~ea~~ 188 (243)
-+.+++..+++++..++..
T Consensus 168 ~Gv~~v~~~~eL~~~~~~~~~~~~~ 192 (445)
T PRK08462 168 RGMRVVEDESDLENLYLAAESEALS 192 (445)
T ss_pred CCeEEECCHHHHHHHHHHHHHHHHh
Confidence 2567777777777666543
No 278
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=21.67 E-value=4.6e+02 Score=22.66 Aligned_cols=91 Identities=16% Similarity=0.109 Sum_probs=45.7
Q ss_pred chhhhHhHhhhCCeeEEeeccCCCcceeecCCCcc-cCccCC-CHHHHHHHHHHHHhcCCCCeEEEEe--CCCcCCCCCh
Q 026121 97 DIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSK-VPCRVD-SPEDCARLIDVNMKLKLGSGLVIGV--PIPREHAASG 172 (243)
Q Consensus 97 Di~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~-~~~r~d-~~~e~A~~~~~~~~l~l~~g~lvan--PiP~e~~~~~ 172 (243)
+...-...|+..|+.|.++...-. .+....-+.. .|-+.+ ..+..-+.++....||-+ .|... +.|.+ .+.
T Consensus 40 ~~~~l~~~l~~~gl~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~--~i~~~~g~~~~~--~~~ 114 (254)
T TIGR03234 40 DAEALKARLAAAGLEQVLFNLPAG-DWAAGERGIACLPGREEEFREGVALAIAYARALGCP--QVNCLAGKRPAG--VSP 114 (254)
T ss_pred CHHHHHHHHHHcCCeEEEEeCCCC-ccccCCCccccCCccHHHHHHHHHHHHHHHHHhCCC--EEEECcCCCCCC--CCH
Confidence 455556789999999999852211 1111111100 011111 112333566667777654 33333 23332 222
Q ss_pred H----HHHHHHHHHHHHHHHcCCC
Q 026121 173 R----VIESAIQSALREAREKNIT 192 (243)
Q Consensus 173 ~----~i~~~I~~Al~ea~~~gi~ 192 (243)
+ .+-+.+++....|++.||+
T Consensus 115 ~~~~~~~~~~l~~l~~~A~~~gi~ 138 (254)
T TIGR03234 115 EEARATLVENLRYAADALDRIGLT 138 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCE
Confidence 3 3334577778889999884
No 279
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=21.65 E-value=85 Score=23.53 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=23.1
Q ss_pred eEEEecccccccchhhhHhHhhhCCeeEEeec
Q 026121 85 VAVVSAGIKSILDIPRTLEYLETHGVCVAAYK 116 (243)
Q Consensus 85 V~VVcaG~KsILDi~~TLE~LET~GV~V~gy~ 116 (243)
+.-+|=-+.+.=|+.+..+.|+.+|+++....
T Consensus 62 ~~hiaf~v~~~~dv~~~~~~l~~~G~~~~~~~ 93 (122)
T cd07265 62 LDFMGFKVLDDADLEKLEARLQAYGVAVERIP 93 (122)
T ss_pred eeEEEEEeCCHHHHHHHHHHHHHCCCcEEEcc
Confidence 33444444455589999999999999988653
No 280
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=21.58 E-value=5.2e+02 Score=24.19 Aligned_cols=95 Identities=14% Similarity=0.106 Sum_probs=56.2
Q ss_pred cccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCC-cCCC-CC
Q 026121 94 SILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIP-REHA-AS 171 (243)
Q Consensus 94 sILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP-~e~~-~~ 171 (243)
.+-|+-+.|+|.+.+|+...=..++-|| |++...-...++.-...++++++-...++.+++ |...|.. -..+ .+
T Consensus 46 Nl~~l~~~l~~~~~~~I~~~R~sS~l~P-~~~h~~~~~w~~~~~~~~~~~~~g~~~~~~~ir---ls~Hp~y~inL~S~~ 121 (303)
T PRK02308 46 NLENLLRILKYNIAHGIGLFRLSSSLIP-LATHPELEGWDYIEPFKEELREIGEFIKEHNIR---LSFHPDQFVVLNSPK 121 (303)
T ss_pred HHHHHHHHHHHHHHCCCCEEEcccCcCC-CCCChhhcccCCCCCCHHHHHHHHHHHHHcCCC---eeccChhhhcCCCCC
Confidence 5678999999999999888766677777 555431111344455677777777776666662 3333321 0011 24
Q ss_pred hHHHHHHHHH---HHHHHHHcCCC
Q 026121 172 GRVIESAIQS---ALREAREKNIT 192 (243)
Q Consensus 172 ~~~i~~~I~~---Al~ea~~~gi~ 192 (243)
++..+..|+. -++-++..|+.
T Consensus 122 ~ev~e~Si~~L~~~~~~~~~lG~~ 145 (303)
T PRK02308 122 PEVVENSIKDLEYHAKLLDLMGID 145 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4555554444 44445556665
No 281
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=21.58 E-value=5e+02 Score=24.21 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=34.1
Q ss_pred ccccccCCCccccccccchhhhcCCCeEEEec------------ccccccchhhhHhHhhhCCeeEE
Q 026121 59 GIGGVHRHGEHTMDISSDLTELGRTPVAVVSA------------GIKSILDIPRTLEYLETHGVCVA 113 (243)
Q Consensus 59 GIGGVHrgae~t~DiSaDL~eL~rtpV~VVca------------G~KsILDi~~TLE~LET~GV~V~ 113 (243)
=||.+|+|-..=++-.. +.+ +.+||+- -.+.+.++..-++.||..||.++
T Consensus 29 tmG~lH~GH~~Li~~a~---~~a--~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~GvD~v 90 (281)
T PRK00380 29 TMGALHEGHLSLVREAR---AEA--DIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAAGVDLV 90 (281)
T ss_pred ccCceeHHHHHHHHHHH---HhC--CEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHcCCCEE
Confidence 56779999654333222 222 5666665 24568888888999999999877
No 282
>PRK06246 fumarate hydratase; Provisional
Probab=21.39 E-value=2.7e+02 Score=26.27 Aligned_cols=55 Identities=13% Similarity=-0.077 Sum_probs=39.8
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCcc---HHHHHHHHHHHHHHHHHH
Q 026121 170 ASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLS---LASNIALVKNNALIGAKI 230 (243)
Q Consensus 170 ~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPflL~~i~elT~G~S---l~aNiaLv~nNA~laa~I 230 (243)
++.+.|.+.+.+++.+|. ..+-|-.++.+.+.-.-++ -+..+.-+.+|+++|++-
T Consensus 4 i~~~~i~~~v~~~~~~a~------~~lp~Dv~~~l~~a~~~E~s~~ak~~l~~ileN~~iA~~~ 61 (280)
T PRK06246 4 IHVEDIIEAVAELCIEAN------YYLPDDVKEALKKAYEKEESPIGKEILKAILENAEIAKEE 61 (280)
T ss_pred ccHHHHHHHHHHHHHHHH------hhCCHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHhcC
Confidence 556778888888888885 4567777777766544332 456788899999998763
No 283
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=21.34 E-value=2.3e+02 Score=24.75 Aligned_cols=12 Identities=50% Similarity=0.573 Sum_probs=10.2
Q ss_pred cEEEeccccccc
Q 026121 53 PVFVTGGIGGVH 64 (243)
Q Consensus 53 ~VFaTGGIGGVH 64 (243)
+|++|||-|++-
T Consensus 2 ~vlItG~~G~iG 13 (328)
T TIGR03466 2 KVLVTGATGFVG 13 (328)
T ss_pred eEEEECCccchh
Confidence 689999999873
No 284
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.32 E-value=3.7e+02 Score=25.39 Aligned_cols=108 Identities=20% Similarity=0.328 Sum_probs=68.9
Q ss_pred ccccchhhhcCCC-eEEEecc--cccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHH
Q 026121 72 DISSDLTELGRTP-VAVVSAG--IKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDV 148 (243)
Q Consensus 72 DiSaDL~eL~rtp-V~VVcaG--~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~ 148 (243)
++..++.+|+++| .++|..| +-|..=+......-|..|+.+--|. +|-.. +.+|+-+.|+.
T Consensus 15 ~~k~~v~~l~~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~---------------l~~~~-t~~el~~~I~~ 78 (287)
T PRK14181 15 TIKENISASSTAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHR---------------LPSDA-TLSDILKLIHR 78 (287)
T ss_pred HHHHHHHHhCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEE---------------CCCCC-CHHHHHHHHHH
Confidence 3455666778889 6677777 4467777777888888998865543 33332 45666666665
Q ss_pred HHhcCCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHH
Q 026121 149 NMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVN 205 (243)
Q Consensus 149 ~~~l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPflL~~i~ 205 (243)
-.+-.--.|++|--|+|+ .++.+.+.++|. -++.+.| +||+=+.++.
T Consensus 79 lN~d~~V~GIlvqlPlP~--~i~~~~i~~~I~------p~KDVDG--l~p~n~g~l~ 125 (287)
T PRK14181 79 LNNDPNIHGILVQLPLPK--HLDAQAILQAIS------PDKDVDG--LHPVNMGKLL 125 (287)
T ss_pred HhCCCCCCeEEEcCCCCC--CcCHHHHHhccC------cccCccc--CChhhHHHHh
Confidence 544444579999999997 466666544332 1233333 5666666554
No 285
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=21.23 E-value=6.5e+02 Score=23.15 Aligned_cols=105 Identities=13% Similarity=0.177 Sum_probs=57.4
Q ss_pred hhhhcCCC-eEEEecccc-cccchhhhHhHhhhCCeeE--Eeec-cCCCccee------------ecCCCcc----cCcc
Q 026121 77 LTELGRTP-VAVVSAGIK-SILDIPRTLEYLETHGVCV--AAYK-TNEFPAFF------------TETSGSK----VPCR 135 (243)
Q Consensus 77 L~eL~rtp-V~VVcaG~K-sILDi~~TLE~LET~GV~V--~gy~-td~fPaFy------------~~~Sg~~----~~~r 135 (243)
|.+++++. .+.++.|.- ++=|+-...||+++.|-+= +--+ ...||.|+ -..++++ ..+.
T Consensus 127 L~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs 206 (266)
T PRK13398 127 LKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELSHLPIIVDPSHA 206 (266)
T ss_pred HHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhccCCCEEEeCCCc
Confidence 34577776 566788866 8888889999999988752 2211 22344443 0111221 2333
Q ss_pred CCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcC------CCCChHHHHHHHHH
Q 026121 136 VDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE------HAASGRVIESAIQS 181 (243)
Q Consensus 136 ~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e------~~~~~~~i~~~I~~ 181 (243)
...-+.+..+..+.-.+|-.+=++=..|-|.+ .+++++++.+.+++
T Consensus 207 ~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~pd~a~~D~~~sl~p~~l~~l~~~ 258 (266)
T PRK13398 207 TGRRELVIPMAKAAIAAGADGLMIEVHPEPEKALSDARQTLNFEEMKELVDE 258 (266)
T ss_pred ccchhhHHHHHHHHHHcCCCEEEEeccCCccccCCchhhcCCHHHHHHHHHH
Confidence 34444556666666677744323333455543 23555666655554
No 286
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.14 E-value=1.7e+02 Score=20.15 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=26.4
Q ss_pred eEEEecccccccch-hhhHhHhhhCCeeEEeeccC
Q 026121 85 VAVVSAGIKSILDI-PRTLEYLETHGVCVAAYKTN 118 (243)
Q Consensus 85 V~VVcaG~KsILDi-~~TLE~LET~GV~V~gy~td 118 (243)
|.||+.|.+....+ .+-++.|...+|.++.|++.
T Consensus 4 IsvvG~~~~~~~~v~~~i~~~L~~i~i~~i~~~~s 38 (64)
T cd04917 4 VALIGNDISETAGVEKRIFDALEDINVRMICYGAS 38 (64)
T ss_pred EEEECCCccCCcCHHHHHHHHHHhCCeEEEEEecC
Confidence 67888888777665 57888888788888888754
No 287
>PRK05362 phosphopentomutase; Provisional
Probab=21.06 E-value=2.8e+02 Score=27.23 Aligned_cols=64 Identities=23% Similarity=0.198 Sum_probs=41.3
Q ss_pred hhhHhHhhhCCeeEEeecc--CCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcC
Q 026121 99 PRTLEYLETHGVCVAAYKT--NEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE 167 (243)
Q Consensus 99 ~~TLE~LET~GV~V~gy~t--d~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e 167 (243)
+--+|+|+..|++|++.+- |-|. .+|+.-....++..+.++......+-.-..+++++|-..-+
T Consensus 224 ~Tl~d~L~~aG~~v~~VGki~DiFa-----~~G~t~~~~~~~~~~~~~~ale~L~~~~~~~fvfvn~~~~D 289 (394)
T PRK05362 224 PTVLDKLKEAGGEVIAVGKIADIFA-----GQGITEKVKTKSNMDGMDATIEEMKEAGDNGLVFTNLVDFD 289 (394)
T ss_pred CCHHHHHHHCCCeEEEEEehhhccc-----CCCcccccCCCCHHHHHHHHHHHHHhCCCCcEEEEecccCc
Confidence 4457899999999999984 4453 46777655666666555544433331234678888865544
No 288
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=21.03 E-value=66 Score=23.38 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=21.8
Q ss_pred ecccccccchhhhHhHhhhCCeeEEeec
Q 026121 89 SAGIKSILDIPRTLEYLETHGVCVAAYK 116 (243)
Q Consensus 89 caG~KsILDi~~TLE~LET~GV~V~gy~ 116 (243)
+-=+.+.=|+.++.+.|+.+|+++..--
T Consensus 78 ~~~~~~~~dl~~~~~~l~~~g~~~~~~~ 105 (128)
T PF00903_consen 78 AFLAFDVDDLDAAYERLKAQGVEIVEEP 105 (128)
T ss_dssp EEEESSHHHHHHHHHHHHHTTGEEEEEE
T ss_pred EEEeccHHHHHHHHHHHhhcCccEEecC
Confidence 3334456688999999999999988763
No 289
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=21.02 E-value=1.3e+02 Score=22.37 Aligned_cols=62 Identities=24% Similarity=0.345 Sum_probs=35.7
Q ss_pred CCcEEEecccccccCCCccccccccchhh-hcCCC-eEEEecccccccchhhhHhHhhhCCeeEEeeccC
Q 026121 51 GIPVFVTGGIGGVHRHGEHTMDISSDLTE-LGRTP-VAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTN 118 (243)
Q Consensus 51 GI~VFaTGGIGGVHrgae~t~DiSaDL~e-L~rtp-V~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td 118 (243)
|.+|.+|||=. ....--|-+-|.. +.+.| +++|+-|+..=.|- ..-+|=+.+||+++.|..|
T Consensus 3 g~rVli~GgR~-----~~D~~~i~~~Ld~~~~~~~~~~lvhGga~~GaD~-iA~~wA~~~gv~~~~~~ad 66 (71)
T PF10686_consen 3 GMRVLITGGRD-----WTDHELIWAALDKVHARHPDMVLVHGGAPKGADR-IAARWARERGVPVIRFPAD 66 (71)
T ss_pred CCEEEEEECCc-----cccHHHHHHHHHHHHHhCCCEEEEECCCCCCHHH-HHHHHHHHCCCeeEEeCcC
Confidence 67888888632 2111114444544 34555 66777777222231 1346779999999987643
No 290
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=20.99 E-value=1.3e+02 Score=29.84 Aligned_cols=97 Identities=19% Similarity=0.130 Sum_probs=54.3
Q ss_pred HHHHHHHHCCCcEEEecccccccCCCcccccc-------ccchhhhc-CCCeEEEe-cccccccchhhhHhHhhhCCeeE
Q 026121 42 ATMFFASMVGIPVFVTGGIGGVHRHGEHTMDI-------SSDLTELG-RTPVAVVS-AGIKSILDIPRTLEYLETHGVCV 112 (243)
Q Consensus 42 aTm~lA~~aGI~VFaTGGIGGVHrgae~t~Di-------SaDL~eL~-rtpV~VVc-aG~KsILDi~~TLE~LET~GV~V 112 (243)
-+..-+..+|.+.+-.|+-+|-..+...-.++ -.|+.+.. +..+-|++ -|..+-.|+-+.|.. =-..|-|
T Consensus 281 e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~-GA~~v~~ 359 (486)
T PRK05567 281 EAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAA-GASAVML 359 (486)
T ss_pred HHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHh-CCCEEEE
Confidence 44555667898888876644422232322222 22233333 33454444 478899999999873 3344444
Q ss_pred Eee--ccCCCcceeecCCC--cccCccCCCH
Q 026121 113 AAY--KTNEFPAFFTETSG--SKVPCRVDSP 139 (243)
Q Consensus 113 ~gy--~td~fPaFy~~~Sg--~~~~~r~d~~ 139 (243)
-++ +++|-|+-|....| +|.=+-+-|.
T Consensus 360 G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~ 390 (486)
T PRK05567 360 GSMLAGTEEAPGEVELYQGRSYKSYRGMGSL 390 (486)
T ss_pred CccccccccCCCceEEECCEEEEEEeccchH
Confidence 443 47999998776655 3443334444
No 291
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=20.92 E-value=2.8e+02 Score=18.77 Aligned_cols=69 Identities=14% Similarity=0.078 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccch---hhhHhHhhhCCe---eE
Q 026121 39 TVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDI---PRTLEYLETHGV---CV 112 (243)
Q Consensus 39 TVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL~rtpV~VVcaG~KsILDi---~~TLE~LET~GV---~V 112 (243)
.+...+...+.+++++....--++.+.. ..++.+.++++++.|.-..-.. +..++++.+.+- ++
T Consensus 13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i 82 (115)
T cd01653 13 ELASPLDALREAGAEVDVVSPDGGPVES----------DVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPI 82 (115)
T ss_pred hhHHHHHHHHHCCCeEEEEcCCCCceec----------cCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEE
Confidence 4456677777788887777666554332 3456788888888887666554 777787777665 87
Q ss_pred Eeecc
Q 026121 113 AAYKT 117 (243)
Q Consensus 113 ~gy~t 117 (243)
++-..
T Consensus 83 ~~~c~ 87 (115)
T cd01653 83 LGICL 87 (115)
T ss_pred EEECc
Confidence 77653
No 292
>cd05537 POLBc_Pol_II DNA polymerase type-II subfamily catalytic domain. Bacteria contain five DNA polymerases (I, II, III, IV and V). DNA polymerase II (Pol II) is a prototype for the B-family of polymerases. The role of Pol II in a variety of cellular activities, such as repair of DNA damaged by UV irradiation or oxidation has been proven by genetic studies. DNA polymerase III is the main enzyme responsible for replication of the bacterial chromosome; however, In vivo studies have also shown that Pol II is able to participate in chromosomal DNA replication with larger role in lagging-strand replication.
Probab=20.86 E-value=1.2e+02 Score=29.20 Aligned_cols=125 Identities=19% Similarity=0.154 Sum_probs=66.2
Q ss_pred cccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeec-cCCCcceeecCCCcccCccCCCHHHHHHHHHHH
Q 026121 71 MDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYK-TNEFPAFFTETSGSKVPCRVDSPEDCARLIDVN 149 (243)
Q Consensus 71 ~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~-td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~ 149 (243)
.++.+-.+.+||. | |..|.+++|+.|..|+ |+ ||-. |..-.......--..-.+++++.+..+
T Consensus 117 ~~~A~~iT~~GR~-----------~--l~~~~~~~e~~g~~Vi-YgDTDSv--fV~~~~~~~~~~~~~~~~~l~~~In~~ 180 (371)
T cd05537 117 PRLASSITLRGHE-----------I--MKQTRAWIEQQGYQVI-YGDTDST--FVWLGEELDAAEAQAIGKELASQINQW 180 (371)
T ss_pred hHHHHHHHHHHHH-----------H--HHHHHHHHHHcCCEEE-EecCCce--EEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3455556666652 2 5678899999999987 77 6643 333222111111111134677777665
Q ss_pred H------hcCCCCeEE----------EEeC-------CCcCCC-----------------CChHHHHHHHHHHHHHHHHc
Q 026121 150 M------KLKLGSGLV----------IGVP-------IPREHA-----------------ASGRVIESAIQSALREAREK 189 (243)
Q Consensus 150 ~------~l~l~~g~l----------vanP-------iP~e~~-----------------~~~~~i~~~I~~Al~ea~~~ 189 (243)
| ++++++.+- +.-+ -...|+ +-+...-.++++..++.-+.
T Consensus 181 ~~~~~~~~~~~~~~l~Le~Ekvy~~~ll~~~~~~~~~~KKrYag~~~~~~~~~i~~KGle~vRrD~~~l~k~~~~~vl~~ 260 (371)
T cd05537 181 WAQKLKEEFGLESFLEIEFETHYSRFFMPTIRGSDEGSKKRYAGLKSTDGGDELVFKGLETVRSDWTPLARQFQKELYER 260 (371)
T ss_pred HHHhhhhhhcCCCCceEEEeeeeeeeeeeccccccccccceEEEEEEECCCcEEEeecceeEecchHHHHHHHHHHHHHH
Confidence 5 344332211 0000 112222 11122334555666666666
Q ss_pred CCCCccCChHHHHHHHHHhCCc
Q 026121 190 NITGNAETPFLLARVNELTGGL 211 (243)
Q Consensus 190 gi~Gk~vTPflL~~i~elT~G~ 211 (243)
=..++++.-|+-+.+.++..|+
T Consensus 261 il~~~~~~~~~~~~~~~l~~g~ 282 (371)
T cd05537 261 VFNDEPYEGFIKETVEELLAGE 282 (371)
T ss_pred HhcCCCHHHHHHHHHHHHHcCC
Confidence 5667788888888888887775
No 293
>PRK12828 short chain dehydrogenase; Provisional
Probab=20.82 E-value=4.7e+02 Score=21.39 Aligned_cols=13 Identities=54% Similarity=0.989 Sum_probs=10.6
Q ss_pred CCcEEEecccccc
Q 026121 51 GIPVFVTGGIGGV 63 (243)
Q Consensus 51 GI~VFaTGGIGGV 63 (243)
|=.+++|||-||+
T Consensus 7 ~k~vlItGatg~i 19 (239)
T PRK12828 7 GKVVAITGGFGGL 19 (239)
T ss_pred CCEEEEECCCCcH
Confidence 4468999999988
No 294
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=20.67 E-value=5.2e+02 Score=21.84 Aligned_cols=16 Identities=44% Similarity=0.636 Sum_probs=12.5
Q ss_pred CCCcEEEecccccccC
Q 026121 50 VGIPVFVTGGIGGVHR 65 (243)
Q Consensus 50 aGI~VFaTGGIGGVHr 65 (243)
.|=.+++|||-||+-+
T Consensus 7 ~~k~vlVtGas~gIG~ 22 (260)
T PRK12823 7 AGKVVVVTGAAQGIGR 22 (260)
T ss_pred CCCEEEEeCCCchHHH
Confidence 4556999999999844
No 295
>PRK07832 short chain dehydrogenase; Provisional
Probab=20.65 E-value=4.6e+02 Score=22.60 Aligned_cols=13 Identities=46% Similarity=0.813 Sum_probs=10.5
Q ss_pred cEEEecccccccC
Q 026121 53 PVFVTGGIGGVHR 65 (243)
Q Consensus 53 ~VFaTGGIGGVHr 65 (243)
.+++|||-||+-+
T Consensus 2 ~vlItGas~giG~ 14 (272)
T PRK07832 2 RCFVTGAASGIGR 14 (272)
T ss_pred EEEEeCCCCHHHH
Confidence 4789999999854
No 296
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=20.59 E-value=5.2e+02 Score=21.80 Aligned_cols=64 Identities=14% Similarity=0.081 Sum_probs=37.8
Q ss_pred HHHHHHHHHCCCcEEEecccccccCCCccccccccchhh-h--cCCCeEEEecccccccchhhhHhHhhhCCeeEEeecc
Q 026121 41 SATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTE-L--GRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKT 117 (243)
Q Consensus 41 aaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~e-L--~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t 117 (243)
.+....|+..|+.+++..- + .. +. .++.+ | .+...+++++... + ...++.|++.|+||+.+++
T Consensus 30 ~gi~~~~~~~g~~~~v~~~-~----~~----~~-~~~~~~l~~~~~dgiii~~~~~---~-~~~~~~~~~~~ipvV~~~~ 95 (275)
T cd06295 30 GGIADALAERGYDLLLSFV-S----SP----DR-DWLARYLASGRADGVILIGQHD---Q-DPLPERLAETGLPFVVWGR 95 (275)
T ss_pred HHHHHHHHHcCCEEEEEeC-C----ch----hH-HHHHHHHHhCCCCEEEEeCCCC---C-hHHHHHHHhCCCCEEEECC
Confidence 3445668888998776531 1 10 11 22322 3 3445555554322 1 3558999999999999986
Q ss_pred C
Q 026121 118 N 118 (243)
Q Consensus 118 d 118 (243)
+
T Consensus 96 ~ 96 (275)
T cd06295 96 P 96 (275)
T ss_pred c
Confidence 4
No 297
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=20.46 E-value=56 Score=29.16 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=28.3
Q ss_pred eEEEecccccccchhhhHhHhhhCCeeEEeec
Q 026121 85 VAVVSAGIKSILDIPRTLEYLETHGVCVAAYK 116 (243)
Q Consensus 85 V~VVcaG~KsILDi~~TLE~LET~GV~V~gy~ 116 (243)
+.|+..+.=++-|..+++++|+..|++|.|+=
T Consensus 164 vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV 195 (254)
T cd00550 164 RLVCIPEKMSLYETERAIQELAKYGIDVDAVI 195 (254)
T ss_pred EEEeCCChhHHHHHHHHHHHHHHCCCCCCEEE
Confidence 66777788899999999999999999998873
No 298
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=20.40 E-value=2.5e+02 Score=26.20 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=47.5
Q ss_pred HHHHHHHHHHCCCcEEEecc-----cccccCCCccccc-cccchhh-------hcCCCeEEEecccccccchhhhHhHhh
Q 026121 40 VSATMFFASMVGIPVFVTGG-----IGGVHRHGEHTMD-ISSDLTE-------LGRTPVAVVSAGIKSILDIPRTLEYLE 106 (243)
Q Consensus 40 VaaTm~lA~~aGI~VFaTGG-----IGGVHrgae~t~D-iSaDL~e-------L~rtpV~VVcaG~KsILDi~~TLE~LE 106 (243)
+..++-+-+..|++|..+.| ++|--+|.+.++| .|.+... ++..++.+ .+..+.=|+..|++.|+
T Consensus 123 ~~~~i~~L~~~G~~v~~~~~~~~v~~~~~l~~~~~~l~~~~s~~~~~ll~aa~~~~~~~~i--~~~~~~~~i~~~~~~L~ 200 (416)
T TIGR01072 123 VDLHLKGLKALGAEIVIEDGYVYASAKGRLVGAHIVLDKVSVGATENIIMAAVLAEGTTVI--ENAAREPEIVDLCEFLN 200 (416)
T ss_pred HHHHHHHHHHCCCEEEEECCEEEEEecCcceeeEEecCCCCHHHHHHHHHHHHhCCCcEEE--ecCCcCcCHHHHHHHHH
Confidence 44567777889998854432 1232345555666 5545331 56666554 45667788989999999
Q ss_pred hCCeeEE
Q 026121 107 THGVCVA 113 (243)
Q Consensus 107 T~GV~V~ 113 (243)
..|+.|-
T Consensus 201 ~~G~~v~ 207 (416)
T TIGR01072 201 KMGAKIT 207 (416)
T ss_pred HCCCEEE
Confidence 9999986
No 299
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=20.32 E-value=1.6e+02 Score=21.68 Aligned_cols=15 Identities=40% Similarity=0.871 Sum_probs=12.6
Q ss_pred HHCCCcEEEeccccc
Q 026121 48 SMVGIPVFVTGGIGG 62 (243)
Q Consensus 48 ~~aGI~VFaTGGIGG 62 (243)
...|+.++++++||.
T Consensus 58 ~~~~v~~vi~~~iG~ 72 (102)
T cd00562 58 ALEGCDAVLVGGIGG 72 (102)
T ss_pred HHCCCcEEEEcccCc
Confidence 347999999999994
No 300
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=20.30 E-value=1.6e+02 Score=28.12 Aligned_cols=88 Identities=18% Similarity=0.199 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHCCCcEEEeccccccc------CC-Ccccccc--ccchhhhcCCCeEEEecccccccchhhhHhHhhhCC
Q 026121 39 TVSATMFFASMVGIPVFVTGGIGGVH------RH-GEHTMDI--SSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHG 109 (243)
Q Consensus 39 TVaaTm~lA~~aGI~VFaTGGIGGVH------rg-ae~t~Di--SaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~G 109 (243)
|.- .+.-+..+|++.+.-|+-||-. +| ....|.+ -.++.+-.+.| ++-.-|.++-.|+-+.|.. --..
T Consensus 150 t~e-~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ip-VIAdGGI~~~~Di~KaLa~-GA~a 226 (326)
T PRK05458 150 TPE-AVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKP-IIADGGIRTHGDIAKSIRF-GATM 226 (326)
T ss_pred CHH-HHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCC-EEEeCCCCCHHHHHHHHHh-CCCE
Confidence 443 3445556899998877777722 11 2234454 33555545666 3456788999999999987 5555
Q ss_pred eeEEee--ccCCCcceeecCCC
Q 026121 110 VCVAAY--KTNEFPAFFTETSG 129 (243)
Q Consensus 110 V~V~gy--~td~fPaFy~~~Sg 129 (243)
|-+-++ +++|=|+=|....|
T Consensus 227 V~vG~~~~~~~espg~~~~~~g 248 (326)
T PRK05458 227 VMIGSLFAGHEESPGKTVEIDG 248 (326)
T ss_pred EEechhhcCCccCCCceeeecc
Confidence 555544 35666665544333
No 301
>PRK15000 peroxidase; Provisional
Probab=20.27 E-value=1.2e+02 Score=26.42 Aligned_cols=99 Identities=16% Similarity=0.246 Sum_probs=60.6
Q ss_pred cccchhhhHhHhhhCCeeEEeeccCC-Cc-ceeecC----CC---cccCccCCCHHHHHHHHHHHH-h--cCCCCeEEEE
Q 026121 94 SILDIPRTLEYLETHGVCVAAYKTNE-FP-AFFTET----SG---SKVPCRVDSPEDCARLIDVNM-K--LKLGSGLVIG 161 (243)
Q Consensus 94 sILDi~~TLE~LET~GV~V~gy~td~-fP-aFy~~~----Sg---~~~~~r~d~~~e~A~~~~~~~-~--l~l~~g~lva 161 (243)
-+-.+..-.+-++.+|+-|+|...|. +. .+|... -| ++.|.-.|.-.++++.+.... . +.+++..||-
T Consensus 53 El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID 132 (200)
T PRK15000 53 ELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLID 132 (200)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEEC
Confidence 45566667777888999999999774 22 344332 33 466666676667777665321 1 1244444443
Q ss_pred ----------eCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChH
Q 026121 162 ----------VPIPREHAASGRVIESAIQSALREAREKNITGNAETPF 199 (243)
Q Consensus 162 ----------nPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPf 199 (243)
+|.|.. -+-+++-++|+ |++..++.| .++|.
T Consensus 133 ~~G~I~~~~~~~~~~g--r~~~eilr~l~-al~~~~~~~----~~~p~ 173 (200)
T PRK15000 133 ANGIVRHQVVNDLPLG--RNIDEMLRMVD-ALQFHEEHG----DVCPA 173 (200)
T ss_pred CCCEEEEEEecCCCCC--CCHHHHHHHHH-HhhhHHhcC----CCcCC
Confidence 455554 36667777774 678777775 46664
No 302
>PRK11059 regulatory protein CsrD; Provisional
Probab=20.04 E-value=1.3e+02 Score=30.15 Aligned_cols=56 Identities=16% Similarity=0.130 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEec
Q 026121 2 RLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTG 58 (243)
Q Consensus 2 GLs~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTG 58 (243)
|.....+++|..-..+.+|+++.-+... ......-.-|.+..-+||..||+|+|+|
T Consensus 555 G~g~~s~~~L~~l~~d~iKid~s~v~~i-~~~~~~~~~v~sli~~a~~~~i~viAeg 610 (640)
T PRK11059 555 GLTVVSTSYIKELNVELIKLHPSLVRNI-HKRTENQLFVRSLVGACAGTETQVFATG 610 (640)
T ss_pred CCCcccHHHHHhCCCCEEEECHHHHhhh-hcCchhHHHHHHHHHHHHHCCCeEEEEE
Confidence 4555566677654457889987655433 3333445668999999999999999984
No 303
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.01 E-value=4.6e+02 Score=24.75 Aligned_cols=89 Identities=20% Similarity=0.209 Sum_probs=58.1
Q ss_pred cccchhhhcCCC-eEEEecc--cccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHH
Q 026121 73 ISSDLTELGRTP-VAVVSAG--IKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVN 149 (243)
Q Consensus 73 iSaDL~eL~rtp-V~VVcaG--~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~ 149 (243)
+-..+.+|.+.| .++|-.| +-|..=+.....+-|..|+.+--|. +|-.. +.+|+-+.|+.-
T Consensus 19 l~~~v~~l~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~---------------l~~~~-~~~el~~~I~~l 82 (287)
T PRK14173 19 LRARLAKLPFVPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEV---------------LPEST-SQEELLELIARL 82 (287)
T ss_pred HHHHHHHhCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEE---------------CCCCC-CHHHHHHHHHHH
Confidence 344556677778 6677777 3466667777888888998876553 33332 456666666654
Q ss_pred HhcCCCCeEEEEeCCCcCCCCChHHHHHHH
Q 026121 150 MKLKLGSGLVIGVPIPREHAASGRVIESAI 179 (243)
Q Consensus 150 ~~l~l~~g~lvanPiP~e~~~~~~~i~~~I 179 (243)
.+-.--.|++|-.|+|+ .++...+...|
T Consensus 83 N~D~~V~GIlvqlPLP~--~i~~~~i~~~I 110 (287)
T PRK14173 83 NADPEVDGILVQLPLPP--HIDFQRVLEAI 110 (287)
T ss_pred hCCCCCCEEEEeCCCCC--CCCHHHHHhcc
Confidence 44334579999999997 46666655543
No 304
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=20.01 E-value=1.4e+02 Score=24.87 Aligned_cols=17 Identities=12% Similarity=-0.081 Sum_probs=7.1
Q ss_pred hhHhHhhhCCeeEEeec
Q 026121 100 RTLEYLETHGVCVAAYK 116 (243)
Q Consensus 100 ~TLE~LET~GV~V~gy~ 116 (243)
.++..+-..|+-.+..+
T Consensus 164 ~~~~~~~~~G~~gva~~ 180 (196)
T TIGR00693 164 ENAAEVLAAGADGVAVV 180 (196)
T ss_pred HHHHHHHHcCCCEEEEh
Confidence 33433334454444443
Done!