Query 026122
Match_columns 243
No_of_seqs 266 out of 2555
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:02:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00107 gidB 16S rRNA methylt 100.0 1.2E-31 2.5E-36 217.2 21.7 186 20-224 2-187 (187)
2 COG0357 GidB Predicted S-adeno 100.0 3.4E-30 7.4E-35 210.7 18.5 203 8-225 11-214 (215)
3 PF02527 GidB: rRNA small subu 100.0 1.6E-29 3.5E-34 203.6 21.2 183 18-219 2-184 (184)
4 TIGR00138 gidB 16S rRNA methyl 100.0 2.5E-29 5.5E-34 202.9 19.0 180 22-222 2-181 (181)
5 COG2226 UbiE Methylase involve 99.9 8.7E-22 1.9E-26 163.9 17.6 141 20-179 12-156 (238)
6 COG4123 Predicted O-methyltran 99.9 7.4E-21 1.6E-25 158.5 16.4 146 76-226 45-213 (248)
7 PF01209 Ubie_methyltran: ubiE 99.9 6.5E-21 1.4E-25 159.6 12.2 141 20-179 8-153 (233)
8 TIGR02752 MenG_heptapren 2-hep 99.8 8E-19 1.7E-23 146.7 20.8 158 43-223 29-231 (231)
9 COG2242 CobL Precorrin-6B meth 99.8 5.4E-19 1.2E-23 140.4 15.8 122 74-200 33-154 (187)
10 PLN02233 ubiquinone biosynthes 99.8 2.7E-18 5.8E-23 146.4 20.1 142 19-179 33-182 (261)
11 PF12847 Methyltransf_18: Meth 99.8 1.2E-18 2.7E-23 129.1 12.7 100 76-179 2-111 (112)
12 PLN02396 hexaprenyldihydroxybe 99.8 4.4E-18 9.5E-23 148.5 18.2 173 19-209 79-292 (322)
13 PRK08287 cobalt-precorrin-6Y C 99.8 1.4E-17 3E-22 135.1 16.3 126 76-208 32-158 (187)
14 PRK14966 unknown domain/N5-glu 99.8 1.1E-17 2.3E-22 149.2 16.8 177 22-204 196-403 (423)
15 PF13847 Methyltransf_31: Meth 99.8 6.8E-18 1.5E-22 132.4 13.5 105 75-181 3-112 (152)
16 KOG1540 Ubiquinone biosynthesi 99.8 3.3E-17 7.1E-22 135.1 16.7 121 40-179 81-214 (296)
17 COG2890 HemK Methylase of poly 99.8 2.7E-17 5.9E-22 141.3 15.3 171 21-199 53-255 (280)
18 PRK00121 trmB tRNA (guanine-N( 99.7 1.3E-17 2.9E-22 137.0 12.1 122 76-202 41-177 (202)
19 PLN02244 tocopherol O-methyltr 99.7 1E-16 2.2E-21 141.6 18.0 130 75-208 118-280 (340)
20 TIGR00452 methyltransferase, p 99.7 2.1E-16 4.6E-21 137.4 18.2 182 13-213 70-280 (314)
21 TIGR00536 hemK_fam HemK family 99.7 5.8E-17 1.3E-21 139.8 14.6 176 22-203 56-266 (284)
22 COG2227 UbiG 2-polyprenyl-3-me 99.7 1.7E-17 3.8E-22 136.4 10.6 99 76-180 60-162 (243)
23 PRK01544 bifunctional N5-gluta 99.7 5.8E-17 1.3E-21 149.8 15.1 150 76-237 139-319 (506)
24 PF05175 MTS: Methyltransferas 99.7 4E-17 8.7E-22 130.5 12.0 103 76-182 32-143 (170)
25 PRK04266 fibrillarin; Provisio 99.7 3.7E-16 8E-21 130.3 18.1 147 73-223 70-225 (226)
26 TIGR03534 RF_mod_PrmC protein- 99.7 6.5E-17 1.4E-21 136.5 13.7 177 21-204 30-239 (251)
27 PRK11036 putative S-adenosyl-L 99.7 2.1E-16 4.6E-21 134.3 16.7 100 76-179 45-149 (255)
28 TIGR02469 CbiT precorrin-6Y C5 99.7 2E-16 4.3E-21 119.0 13.1 101 76-178 20-121 (124)
29 PRK15068 tRNA mo(5)U34 methylt 99.7 4.7E-16 1E-20 136.3 17.2 129 76-209 123-277 (322)
30 PRK09328 N5-glutamine S-adenos 99.7 2.6E-16 5.6E-21 134.8 14.8 177 21-204 50-260 (275)
31 PRK00377 cbiT cobalt-precorrin 99.7 6.6E-16 1.4E-20 126.4 16.3 124 75-202 40-166 (198)
32 PRK11207 tellurite resistance 99.7 3.9E-16 8.5E-21 127.7 14.9 97 76-178 31-133 (197)
33 PRK11873 arsM arsenite S-adeno 99.7 4.8E-16 1E-20 133.2 15.8 130 73-205 75-229 (272)
34 PRK07402 precorrin-6B methylas 99.7 4E-16 8.7E-21 127.5 14.5 120 75-198 40-159 (196)
35 smart00828 PKS_MT Methyltransf 99.7 4.6E-16 1E-20 129.4 14.7 127 77-207 1-145 (224)
36 COG2264 PrmA Ribosomal protein 99.7 4.2E-16 9E-21 133.3 14.4 128 72-206 159-288 (300)
37 TIGR00537 hemK_rel_arch HemK-r 99.7 2.1E-15 4.6E-20 121.4 17.5 124 76-209 20-168 (179)
38 TIGR00091 tRNA (guanine-N(7)-) 99.7 3.4E-16 7.4E-21 127.8 12.5 125 76-202 17-154 (194)
39 PLN02490 MPBQ/MSBQ methyltrans 99.7 8.3E-16 1.8E-20 134.8 15.8 127 76-208 114-258 (340)
40 PF02353 CMAS: Mycolic acid cy 99.7 4.3E-16 9.4E-21 133.3 13.7 127 73-206 60-217 (273)
41 PF08241 Methyltransf_11: Meth 99.7 1.1E-16 2.3E-21 114.6 8.3 91 80-177 1-95 (95)
42 TIGR03533 L3_gln_methyl protei 99.7 6.7E-16 1.5E-20 133.1 14.7 120 76-203 122-271 (284)
43 PTZ00098 phosphoethanolamine N 99.7 8.8E-16 1.9E-20 131.0 15.3 127 74-206 51-202 (263)
44 PRK00216 ubiE ubiquinone/menaq 99.7 6E-15 1.3E-19 123.3 19.7 101 76-179 52-158 (239)
45 PF06325 PrmA: Ribosomal prote 99.7 5.2E-16 1.1E-20 133.6 13.1 123 73-206 159-283 (295)
46 COG2230 Cfa Cyclopropane fatty 99.7 6.7E-16 1.5E-20 131.0 13.2 100 73-179 70-176 (283)
47 PLN02336 phosphoethanolamine N 99.7 3.6E-15 7.9E-20 137.3 17.9 128 74-206 265-414 (475)
48 PF03848 TehB: Tellurite resis 99.7 1.1E-15 2.4E-20 123.6 12.5 96 76-178 31-132 (192)
49 PRK14103 trans-aconitate 2-met 99.7 1E-15 2.2E-20 130.1 12.8 93 76-179 30-126 (255)
50 PRK15451 tRNA cmo(5)U34 methyl 99.7 2.2E-15 4.7E-20 127.5 13.9 99 76-179 57-164 (247)
51 PRK11805 N5-glutamine S-adenos 99.7 2.7E-15 5.8E-20 130.6 14.7 119 77-203 135-283 (307)
52 PRK00517 prmA ribosomal protei 99.7 5.1E-15 1.1E-19 125.5 15.9 120 73-206 117-238 (250)
53 KOG1270 Methyltransferases [Co 99.7 4.6E-16 9.9E-21 129.0 9.0 96 76-179 90-195 (282)
54 PRK14967 putative methyltransf 99.6 5.4E-15 1.2E-19 123.2 15.1 128 75-210 36-188 (223)
55 PRK12335 tellurite resistance 99.6 6.3E-16 1.4E-20 133.6 9.6 96 76-178 121-222 (287)
56 PLN03075 nicotianamine synthas 99.6 8.4E-15 1.8E-19 125.6 16.2 146 75-226 123-277 (296)
57 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 2.1E-14 4.5E-19 118.8 17.8 99 76-179 40-143 (223)
58 TIGR00477 tehB tellurite resis 99.6 2.4E-15 5.1E-20 122.9 11.7 96 76-178 31-132 (195)
59 TIGR00740 methyltransferase, p 99.6 5.6E-15 1.2E-19 124.3 14.2 99 76-179 54-161 (239)
60 TIGR00080 pimt protein-L-isoas 99.6 2.9E-15 6.3E-20 124.2 12.2 103 74-181 76-179 (215)
61 PRK13942 protein-L-isoaspartat 99.6 4.1E-15 8.9E-20 123.0 12.9 104 73-181 74-178 (212)
62 PRK01683 trans-aconitate 2-met 99.6 5.5E-15 1.2E-19 125.6 14.0 96 75-179 31-130 (258)
63 TIGR03704 PrmC_rel_meth putati 99.6 8.1E-15 1.8E-19 124.2 14.8 123 76-205 87-239 (251)
64 PRK14968 putative methyltransf 99.6 2.6E-14 5.6E-19 115.3 17.0 123 76-206 24-173 (188)
65 TIGR00406 prmA ribosomal prote 99.6 1E-14 2.3E-19 126.0 14.5 123 73-204 157-281 (288)
66 PRK13944 protein-L-isoaspartat 99.6 9.5E-15 2.1E-19 120.3 13.6 103 74-181 71-175 (205)
67 PRK15001 SAM-dependent 23S rib 99.6 5.9E-15 1.3E-19 131.2 12.8 102 76-181 229-342 (378)
68 PRK05785 hypothetical protein; 99.6 2.8E-14 6E-19 119.2 15.8 105 43-173 33-141 (226)
69 PF13649 Methyltransf_25: Meth 99.6 2.2E-15 4.7E-20 110.1 8.0 91 79-173 1-101 (101)
70 COG2813 RsmC 16S RNA G1207 met 99.6 8.9E-15 1.9E-19 124.6 12.9 100 76-180 159-267 (300)
71 PRK08317 hypothetical protein; 99.6 5.9E-14 1.3E-18 117.0 17.6 130 75-208 19-178 (241)
72 PF13659 Methyltransf_26: Meth 99.6 5.2E-15 1.1E-19 110.5 9.7 103 76-180 1-116 (117)
73 TIGR01177 conserved hypothetic 99.6 1.7E-14 3.8E-19 126.9 13.9 137 72-220 179-328 (329)
74 PLN02672 methionine S-methyltr 99.6 9.9E-15 2.1E-19 143.2 13.4 161 76-243 119-340 (1082)
75 PRK10258 biotin biosynthesis p 99.6 4.2E-14 9.2E-19 119.7 15.0 94 76-179 43-140 (251)
76 PF08242 Methyltransf_12: Meth 99.6 6.6E-16 1.4E-20 112.2 3.1 95 80-175 1-99 (99)
77 KOG2904 Predicted methyltransf 99.6 1.2E-13 2.6E-18 115.2 16.0 105 76-180 149-286 (328)
78 PRK14121 tRNA (guanine-N(7)-)- 99.6 4.7E-14 1E-18 125.2 14.3 104 76-180 123-236 (390)
79 PTZ00146 fibrillarin; Provisio 99.6 4.2E-13 9E-18 114.8 18.8 148 73-224 130-287 (293)
80 PRK09489 rsmC 16S ribosomal RN 99.6 4E-14 8.7E-19 124.9 12.4 100 76-181 197-305 (342)
81 COG4106 Tam Trans-aconitate me 99.6 1.8E-14 3.9E-19 116.4 9.2 99 76-183 31-133 (257)
82 KOG1271 Methyltransferases [Ge 99.6 2.7E-13 6E-18 106.8 15.4 121 77-203 69-202 (227)
83 TIGR02072 BioC biotin biosynth 99.6 1.1E-13 2.4E-18 115.5 14.1 97 76-179 35-135 (240)
84 TIGR02716 C20_methyl_CrtF C-20 99.5 1.8E-13 3.9E-18 119.3 15.0 101 73-179 147-254 (306)
85 PRK06922 hypothetical protein; 99.5 6.5E-14 1.4E-18 130.5 12.6 104 75-180 418-538 (677)
86 TIGR00446 nop2p NOL1/NOP2/sun 99.5 2.3E-13 4.9E-18 116.3 14.7 113 74-189 70-209 (264)
87 COG2518 Pcm Protein-L-isoaspar 99.5 6.7E-14 1.4E-18 113.7 10.7 103 72-183 69-173 (209)
88 PRK00312 pcm protein-L-isoaspa 99.5 1.7E-13 3.6E-18 113.3 12.9 100 74-180 77-176 (212)
89 PRK13168 rumA 23S rRNA m(5)U19 99.5 1.2E-12 2.6E-17 119.6 19.6 129 74-208 296-426 (443)
90 PLN02781 Probable caffeoyl-CoA 99.5 1.3E-13 2.9E-18 115.7 12.0 103 75-177 68-176 (234)
91 PRK14901 16S rRNA methyltransf 99.5 6.9E-13 1.5E-17 120.9 17.6 129 73-201 250-408 (434)
92 COG2519 GCD14 tRNA(1-methylade 99.5 3.6E-13 7.8E-18 111.8 14.0 126 73-205 92-219 (256)
93 PRK14902 16S rRNA methyltransf 99.5 4.9E-13 1.1E-17 122.2 16.2 129 73-203 248-405 (444)
94 PF08003 Methyltransf_9: Prote 99.5 1.6E-13 3.5E-18 116.9 12.1 155 76-235 116-307 (315)
95 TIGR02021 BchM-ChlM magnesium 99.5 8.3E-13 1.8E-17 109.6 15.8 123 76-206 56-206 (219)
96 TIGR01983 UbiG ubiquinone bios 99.5 9.8E-13 2.1E-17 109.3 16.2 129 76-208 46-205 (224)
97 PF13489 Methyltransf_23: Meth 99.5 2.6E-13 5.7E-18 106.4 12.1 90 76-180 23-116 (161)
98 PRK05134 bifunctional 3-demeth 99.5 2.5E-12 5.5E-17 107.6 18.6 128 76-208 49-207 (233)
99 PF01135 PCMT: Protein-L-isoas 99.5 1.7E-13 3.6E-18 112.9 11.0 103 73-181 70-174 (209)
100 COG2263 Predicted RNA methylas 99.5 2.5E-12 5.4E-17 102.3 17.1 162 21-211 4-173 (198)
101 PRK14903 16S rRNA methyltransf 99.5 4E-13 8.6E-18 122.2 14.4 127 73-201 235-390 (431)
102 KOG4300 Predicted methyltransf 99.5 2.1E-13 4.5E-18 109.5 11.0 100 77-179 78-182 (252)
103 PRK11088 rrmA 23S rRNA methylt 99.5 2.2E-13 4.7E-18 116.9 11.6 102 76-188 86-191 (272)
104 PF08704 GCD14: tRNA methyltra 99.5 7.9E-13 1.7E-17 111.2 14.7 131 73-206 38-171 (247)
105 PRK00811 spermidine synthase; 99.5 1.6E-12 3.5E-17 112.1 16.7 145 76-223 77-237 (283)
106 PRK11188 rrmJ 23S rRNA methylt 99.5 5E-13 1.1E-17 110.3 13.0 96 73-179 49-165 (209)
107 TIGR00438 rrmJ cell division p 99.5 6.7E-13 1.5E-17 107.7 13.5 118 74-205 31-169 (188)
108 PRK04457 spermidine synthase; 99.5 3.3E-13 7.1E-18 115.1 12.1 102 76-179 67-177 (262)
109 PRK15128 23S rRNA m(5)C1962 me 99.5 9.3E-13 2E-17 118.3 15.6 106 74-180 219-340 (396)
110 PRK10901 16S rRNA methyltransf 99.5 1.1E-12 2.3E-17 119.5 15.6 127 73-201 242-396 (427)
111 PRK13943 protein-L-isoaspartat 99.5 5.6E-13 1.2E-17 116.5 13.3 102 74-180 79-181 (322)
112 PLN02585 magnesium protoporphy 99.5 3.8E-12 8.2E-17 111.0 18.3 120 76-205 145-298 (315)
113 PRK11705 cyclopropane fatty ac 99.5 3.3E-13 7.2E-18 120.9 11.8 97 73-179 165-267 (383)
114 PRK14904 16S rRNA methyltransf 99.5 1.1E-12 2.3E-17 120.0 15.2 124 74-201 249-401 (445)
115 TIGR03840 TMPT_Se_Te thiopurin 99.5 3.3E-13 7.2E-18 111.6 10.7 99 76-178 35-151 (213)
116 PRK11783 rlmL 23S rRNA m(2)G24 99.5 6.1E-13 1.3E-17 127.7 13.7 128 75-208 538-682 (702)
117 PHA03411 putative methyltransf 99.5 1.3E-12 2.9E-17 110.7 13.3 118 76-202 65-210 (279)
118 PRK03522 rumB 23S rRNA methylu 99.5 2.8E-12 6E-17 112.3 15.4 123 76-208 174-298 (315)
119 TIGR03587 Pse_Me-ase pseudamin 99.4 1.3E-12 2.8E-17 107.5 12.1 94 75-179 43-142 (204)
120 PRK07580 Mg-protoporphyrin IX 99.4 7.7E-12 1.7E-16 104.2 16.6 123 76-207 64-215 (230)
121 smart00138 MeTrc Methyltransfe 99.4 5.2E-13 1.1E-17 114.0 9.5 102 76-180 100-243 (264)
122 COG4122 Predicted O-methyltran 99.4 1.2E-12 2.5E-17 107.9 10.5 103 75-178 59-165 (219)
123 TIGR00563 rsmB ribosomal RNA s 99.4 3.6E-12 7.9E-17 115.9 14.9 124 73-197 236-387 (426)
124 TIGR02085 meth_trns_rumB 23S r 99.4 6.2E-12 1.3E-16 112.5 15.8 124 75-208 233-358 (374)
125 PF05401 NodS: Nodulation prot 99.4 8.5E-12 1.8E-16 100.3 14.4 95 77-179 45-146 (201)
126 PF01596 Methyltransf_3: O-met 99.4 1E-12 2.2E-17 107.9 8.9 103 76-178 46-154 (205)
127 cd02440 AdoMet_MTases S-adenos 99.4 3.9E-12 8.5E-17 90.9 10.5 98 78-178 1-103 (107)
128 PF02390 Methyltransf_4: Putat 99.4 5.7E-12 1.2E-16 102.9 12.2 124 77-202 19-156 (195)
129 PRK10909 rsmD 16S rRNA m(2)G96 99.4 6E-12 1.3E-16 102.9 12.3 103 76-181 54-161 (199)
130 PRK13255 thiopurine S-methyltr 99.4 2.9E-12 6.4E-17 106.3 10.4 98 76-177 38-153 (218)
131 TIGR00479 rumA 23S rRNA (uraci 99.4 9.4E-12 2E-16 113.4 14.5 129 74-208 291-422 (431)
132 PLN02476 O-methyltransferase 99.4 4E-12 8.7E-17 108.5 11.0 104 75-178 118-227 (278)
133 PLN02336 phosphoethanolamine N 99.4 6.5E-12 1.4E-16 115.8 13.1 123 76-203 38-179 (475)
134 TIGR00417 speE spermidine synt 99.4 8E-11 1.7E-15 100.9 17.9 145 76-223 73-232 (270)
135 PRK06202 hypothetical protein; 99.3 4E-11 8.7E-16 100.4 14.5 89 76-170 61-159 (232)
136 PRK11727 23S rRNA mA1618 methy 99.3 1.3E-10 2.9E-15 101.3 17.9 80 75-154 114-197 (321)
137 KOG1541 Predicted protein carb 99.3 1E-10 2.2E-15 95.1 15.4 115 76-200 51-181 (270)
138 PRK01581 speE spermidine synth 99.3 8.1E-11 1.8E-15 103.5 16.1 128 76-205 151-296 (374)
139 PLN02366 spermidine synthase 99.3 1.9E-10 4.1E-15 100.1 18.3 149 75-224 91-254 (308)
140 PRK03612 spermidine synthase; 99.3 3.1E-11 6.7E-16 112.3 14.1 123 74-199 296-437 (521)
141 KOG1499 Protein arginine N-met 99.3 1.3E-11 2.8E-16 106.8 10.5 96 76-176 61-164 (346)
142 PRK05031 tRNA (uracil-5-)-meth 99.3 1.3E-10 2.9E-15 103.5 16.1 123 77-208 208-345 (362)
143 KOG1500 Protein arginine N-met 99.3 7.6E-11 1.7E-15 101.1 13.6 98 76-180 178-283 (517)
144 PHA03412 putative methyltransf 99.3 1.6E-11 3.5E-16 101.9 9.3 90 76-174 50-158 (241)
145 smart00650 rADc Ribosomal RNA 99.3 5.1E-11 1.1E-15 95.1 11.8 98 75-179 13-113 (169)
146 TIGR03438 probable methyltrans 99.3 2.9E-11 6.3E-16 105.2 10.8 104 76-179 64-177 (301)
147 PF02475 Met_10: Met-10+ like- 99.3 2.2E-11 4.8E-16 99.4 9.2 100 73-176 99-199 (200)
148 PLN02589 caffeoyl-CoA O-methyl 99.3 3.8E-11 8.3E-16 101.2 10.5 102 76-177 80-188 (247)
149 TIGR02081 metW methionine bios 99.3 1.3E-10 2.9E-15 94.7 13.4 122 74-208 12-169 (194)
150 PRK04338 N(2),N(2)-dimethylgua 99.3 4.3E-11 9.2E-16 107.1 10.7 101 76-179 58-158 (382)
151 TIGR02143 trmA_only tRNA (urac 99.2 3.4E-10 7.5E-15 100.5 15.6 124 76-208 198-336 (353)
152 PF10294 Methyltransf_16: Puta 99.2 5.4E-11 1.2E-15 95.4 8.9 119 76-196 46-172 (173)
153 TIGR00095 RNA methyltransferas 99.2 1.9E-10 4.1E-15 93.5 11.9 105 76-181 50-161 (189)
154 COG4976 Predicted methyltransf 99.2 8.9E-12 1.9E-16 101.7 4.0 141 76-224 126-286 (287)
155 PF07021 MetW: Methionine bios 99.2 3.4E-10 7.4E-15 90.9 12.5 124 73-208 11-169 (193)
156 PRK13256 thiopurine S-methyltr 99.2 1.4E-10 2.9E-15 96.5 10.5 103 75-179 43-163 (226)
157 COG1092 Predicted SAM-dependen 99.2 2.6E-10 5.7E-15 101.6 12.2 129 76-205 218-365 (393)
158 COG1041 Predicted DNA modifica 99.2 4.4E-10 9.5E-15 97.8 13.2 138 73-223 195-346 (347)
159 PF03602 Cons_hypoth95: Conser 99.2 1.4E-10 3.1E-15 93.7 9.6 124 44-182 25-156 (183)
160 KOG2899 Predicted methyltransf 99.2 8.7E-10 1.9E-14 90.8 13.9 99 76-179 59-209 (288)
161 PF10672 Methyltrans_SAM: S-ad 99.2 2.1E-10 4.6E-15 98.4 10.9 132 75-209 123-267 (286)
162 PF05724 TPMT: Thiopurine S-me 99.2 4E-10 8.7E-15 93.5 12.2 130 75-209 37-193 (218)
163 PF05185 PRMT5: PRMT5 arginine 99.2 2.3E-10 4.9E-15 104.3 11.5 97 76-176 187-294 (448)
164 KOG2361 Predicted methyltransf 99.2 7.5E-11 1.6E-15 97.0 7.4 102 77-179 73-183 (264)
165 PRK11933 yebU rRNA (cytosine-C 99.2 7.4E-10 1.6E-14 101.4 14.7 125 72-198 110-262 (470)
166 COG0220 Predicted S-adenosylme 99.2 2.5E-10 5.3E-15 95.0 10.4 104 77-180 50-165 (227)
167 KOG3420 Predicted RNA methylas 99.1 1.9E-10 4.1E-15 87.6 7.7 74 76-154 49-122 (185)
168 KOG3191 Predicted N6-DNA-methy 99.1 2.6E-09 5.5E-14 84.5 14.2 121 76-204 44-191 (209)
169 COG2520 Predicted methyltransf 99.1 2.2E-09 4.8E-14 93.9 15.0 124 72-199 185-313 (341)
170 PF06080 DUF938: Protein of un 99.1 1.3E-09 2.8E-14 88.6 12.1 129 78-206 28-192 (204)
171 KOG3010 Methyltransferase [Gen 99.1 9.4E-11 2E-15 96.5 4.4 98 77-179 35-136 (261)
172 COG0742 N6-adenine-specific me 99.1 6.5E-09 1.4E-13 83.4 14.4 124 44-182 26-157 (187)
173 PF01170 UPF0020: Putative RNA 99.1 2.9E-09 6.3E-14 85.8 11.9 123 74-206 27-171 (179)
174 PLN02823 spermine synthase 99.1 9.4E-09 2E-13 90.5 16.0 145 76-223 104-267 (336)
175 PRK14896 ksgA 16S ribosomal RN 99.0 1.6E-09 3.5E-14 92.2 10.2 70 76-154 30-99 (258)
176 COG2265 TrmA SAM-dependent met 99.0 8E-09 1.7E-13 93.7 14.9 128 75-208 293-422 (432)
177 PF00891 Methyltransf_2: O-met 99.0 2.8E-09 6E-14 89.7 11.0 93 74-179 99-199 (241)
178 COG0144 Sun tRNA and rRNA cyto 99.0 8.8E-09 1.9E-13 91.5 14.5 130 73-202 154-313 (355)
179 TIGR00478 tly hemolysin TlyA f 99.0 3.3E-09 7.1E-14 88.5 10.9 120 76-206 76-217 (228)
180 PF05958 tRNA_U5-meth_tr: tRNA 99.0 6.8E-09 1.5E-13 92.2 13.2 137 77-223 198-351 (352)
181 TIGR00308 TRM1 tRNA(guanine-26 99.0 2.2E-09 4.7E-14 95.8 9.9 100 77-178 46-146 (374)
182 PTZ00338 dimethyladenosine tra 99.0 2.9E-09 6.2E-14 92.2 10.2 73 75-154 36-109 (294)
183 PF05148 Methyltransf_8: Hypot 99.0 6.3E-09 1.4E-13 84.5 11.3 126 74-225 71-199 (219)
184 PF05891 Methyltransf_PK: AdoM 99.0 1.9E-09 4.1E-14 88.2 8.1 126 76-205 56-200 (218)
185 PLN02232 ubiquinone biosynthes 99.0 5.2E-09 1.1E-13 82.8 9.7 74 103-179 1-81 (160)
186 PRK00274 ksgA 16S ribosomal RN 98.9 2.7E-09 5.9E-14 91.6 8.0 72 75-154 42-113 (272)
187 PF05219 DREV: DREV methyltran 98.9 1.8E-08 4E-13 84.3 12.6 122 76-211 95-245 (265)
188 PRK01544 bifunctional N5-gluta 98.9 1.2E-08 2.6E-13 94.7 12.5 123 76-201 348-483 (506)
189 KOG1661 Protein-L-isoaspartate 98.9 7.5E-09 1.6E-13 83.7 8.8 104 73-181 80-195 (237)
190 COG0421 SpeE Spermidine syntha 98.9 4E-08 8.7E-13 84.4 13.6 142 76-220 77-232 (282)
191 PF01564 Spermine_synth: Sperm 98.9 7.9E-08 1.7E-12 81.3 15.1 146 76-224 77-237 (246)
192 PRK00050 16S rRNA m(4)C1402 me 98.9 1.5E-08 3.2E-13 87.6 10.6 76 75-152 19-96 (296)
193 PF09445 Methyltransf_15: RNA 98.9 5.9E-09 1.3E-13 82.2 7.5 74 78-153 2-76 (163)
194 PF04816 DUF633: Family of unk 98.8 1.3E-07 2.8E-12 77.7 14.4 138 79-225 1-141 (205)
195 KOG3045 Predicted RNA methylas 98.8 3.1E-08 6.8E-13 82.5 10.7 122 76-225 181-305 (325)
196 TIGR00755 ksgA dimethyladenosi 98.8 5.3E-08 1.1E-12 82.7 12.4 70 76-154 30-102 (253)
197 KOG1663 O-methyltransferase [S 98.8 4.9E-08 1.1E-12 80.1 11.2 104 76-179 74-183 (237)
198 KOG2915 tRNA(1-methyladenosine 98.8 2.6E-07 5.5E-12 77.6 14.6 133 73-209 103-238 (314)
199 COG2521 Predicted archaeal met 98.7 2E-08 4.4E-13 82.5 6.5 129 74-204 133-275 (287)
200 PF12147 Methyltransf_20: Puta 98.7 2E-07 4.3E-12 79.2 12.7 104 76-179 136-249 (311)
201 PRK04148 hypothetical protein; 98.7 6.1E-08 1.3E-12 73.9 8.6 83 76-169 17-101 (134)
202 PF03291 Pox_MCEL: mRNA cappin 98.7 6.2E-08 1.3E-12 85.2 9.9 105 75-180 62-187 (331)
203 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.7 7.4E-08 1.6E-12 83.1 10.2 112 74-186 84-226 (283)
204 PRK00536 speE spermidine synth 98.7 7.6E-07 1.7E-11 75.7 15.3 138 75-223 72-215 (262)
205 KOG3201 Uncharacterized conser 98.7 1.1E-08 2.3E-13 79.5 3.5 131 76-208 30-168 (201)
206 COG4076 Predicted RNA methylas 98.7 2E-08 4.3E-13 79.9 4.9 94 76-176 33-132 (252)
207 PF01269 Fibrillarin: Fibrilla 98.7 3.9E-06 8.4E-11 69.0 17.9 147 73-223 71-227 (229)
208 PF08123 DOT1: Histone methyla 98.6 8.5E-08 1.8E-12 78.8 7.2 104 74-177 41-156 (205)
209 TIGR01444 fkbM_fam methyltrans 98.6 1.5E-07 3.3E-12 72.5 8.1 59 78-136 1-59 (143)
210 PRK11783 rlmL 23S rRNA m(2)G24 98.6 3.4E-07 7.4E-12 88.3 11.8 107 74-181 189-349 (702)
211 PF01739 CheR: CheR methyltran 98.5 4.4E-07 9.4E-12 74.1 8.6 102 76-180 32-176 (196)
212 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.5 1.1E-06 2.3E-11 74.5 11.1 146 76-223 57-255 (256)
213 PF01861 DUF43: Protein of unk 98.5 1.6E-05 3.5E-10 66.2 17.8 128 76-206 45-178 (243)
214 COG0030 KsgA Dimethyladenosine 98.5 8.2E-07 1.8E-11 75.1 9.7 74 75-154 30-103 (259)
215 PRK10611 chemotaxis methyltran 98.5 4E-07 8.7E-12 78.4 7.9 102 76-179 116-262 (287)
216 KOG1975 mRNA cap methyltransfe 98.5 2E-06 4.3E-11 74.0 11.7 106 74-180 116-238 (389)
217 KOG2187 tRNA uracil-5-methyltr 98.5 1.8E-07 3.8E-12 84.8 5.7 63 74-138 382-444 (534)
218 TIGR02987 met_A_Alw26 type II 98.5 2.3E-06 5E-11 80.1 13.3 78 76-153 32-119 (524)
219 PF03059 NAS: Nicotianamine sy 98.5 1.9E-06 4.1E-11 73.6 11.0 144 76-225 121-273 (276)
220 KOG1122 tRNA and rRNA cytosine 98.4 7.2E-06 1.6E-10 72.9 14.3 123 74-197 240-390 (460)
221 PF09243 Rsm22: Mitochondrial 98.4 2.7E-06 5.9E-11 73.1 11.4 125 76-206 34-168 (274)
222 PF01728 FtsJ: FtsJ-like methy 98.4 5.7E-07 1.2E-11 72.3 6.6 93 76-179 24-139 (181)
223 COG0116 Predicted N6-adenine-s 98.4 2.5E-06 5.4E-11 75.5 10.7 106 72-180 188-345 (381)
224 COG3897 Predicted methyltransf 98.4 1.1E-06 2.4E-11 70.5 7.0 95 76-179 80-178 (218)
225 PF02384 N6_Mtase: N-6 DNA Met 98.4 3.5E-06 7.6E-11 73.5 10.9 148 76-225 47-234 (311)
226 KOG0820 Ribosomal RNA adenine 98.4 1.9E-06 4.1E-11 72.5 8.6 75 73-154 56-131 (315)
227 PF13679 Methyltransf_32: Meth 98.4 1.5E-06 3.3E-11 67.2 7.6 73 76-152 26-105 (141)
228 COG2384 Predicted SAM-dependen 98.4 1.6E-05 3.6E-10 65.1 13.5 143 74-225 15-160 (226)
229 COG0293 FtsJ 23S rRNA methylas 98.3 1.5E-05 3.3E-10 65.0 12.9 137 73-226 43-202 (205)
230 COG4262 Predicted spermidine s 98.3 1.4E-05 3.1E-10 69.9 13.2 155 71-230 285-458 (508)
231 COG1889 NOP1 Fibrillarin-like 98.3 5.8E-05 1.3E-09 61.1 15.7 147 73-223 74-229 (231)
232 COG3963 Phospholipid N-methylt 98.3 3.3E-06 7.1E-11 66.2 8.3 103 74-181 47-159 (194)
233 PF05971 Methyltransf_10: Prot 98.3 1.6E-05 3.4E-10 68.7 12.4 77 76-153 103-184 (299)
234 PF13578 Methyltransf_24: Meth 98.3 5.2E-07 1.1E-11 66.1 2.6 96 80-177 1-103 (106)
235 PRK11760 putative 23S rRNA C24 98.2 2.2E-05 4.7E-10 68.8 12.6 114 74-199 210-332 (357)
236 COG1352 CheR Methylase of chem 98.2 5.7E-06 1.2E-10 70.5 8.4 101 76-179 97-241 (268)
237 COG0500 SmtA SAM-dependent met 98.2 2.6E-05 5.5E-10 58.6 11.1 98 79-180 52-156 (257)
238 PF06962 rRNA_methylase: Putat 98.2 7.1E-05 1.5E-09 57.5 13.3 120 101-223 1-140 (140)
239 TIGR03439 methyl_EasF probable 98.2 1.9E-05 4E-10 69.2 11.2 105 75-179 76-197 (319)
240 PF07942 N2227: N2227-like pro 98.2 5.4E-05 1.2E-09 64.6 13.1 128 76-206 57-242 (270)
241 KOG2940 Predicted methyltransf 98.2 2.3E-06 5E-11 70.4 4.5 107 76-188 73-184 (325)
242 KOG3115 Methyltransferase-like 98.1 5.1E-05 1.1E-09 61.4 11.6 144 22-180 19-184 (249)
243 PF00398 RrnaAD: Ribosomal RNA 98.1 2.3E-05 4.9E-10 66.9 10.1 75 76-154 31-105 (262)
244 TIGR00006 S-adenosyl-methyltra 98.1 4.4E-05 9.6E-10 66.2 11.4 77 75-152 20-98 (305)
245 KOG1709 Guanidinoacetate methy 98.1 4.8E-05 1E-09 62.1 10.7 106 75-183 101-210 (271)
246 KOG1269 SAM-dependent methyltr 98.1 9.4E-06 2E-10 72.2 6.8 103 72-178 107-214 (364)
247 PF11968 DUF3321: Putative met 98.0 9.9E-05 2.1E-09 60.5 11.7 127 76-226 52-195 (219)
248 KOG2730 Methylase [General fun 98.0 4.7E-06 1E-10 68.1 3.3 76 76-153 95-172 (263)
249 COG1867 TRM1 N2,N2-dimethylgua 98.0 1.2E-05 2.6E-10 70.5 6.0 102 76-179 53-154 (380)
250 PF02005 TRM: N2,N2-dimethylgu 98.0 4E-05 8.6E-10 68.7 9.5 102 76-179 50-154 (377)
251 KOG4589 Cell division protein 98.0 0.00013 2.8E-09 58.4 11.1 96 72-178 66-183 (232)
252 PRK10742 putative methyltransf 98.0 3.6E-05 7.7E-10 64.7 8.4 76 74-153 85-171 (250)
253 COG1189 Predicted rRNA methyla 98.0 0.00033 7.2E-09 58.2 13.8 143 75-224 79-242 (245)
254 KOG3987 Uncharacterized conser 97.9 2.6E-06 5.6E-11 69.0 0.9 120 76-210 113-264 (288)
255 KOG1331 Predicted methyltransf 97.9 3.6E-05 7.8E-10 65.4 6.9 90 76-179 46-143 (293)
256 COG1568 Predicted methyltransf 97.8 0.00013 2.8E-09 61.7 9.0 127 76-204 153-286 (354)
257 PF03141 Methyltransf_29: Puta 97.8 2.6E-05 5.5E-10 71.1 4.6 95 77-181 119-221 (506)
258 KOG3178 Hydroxyindole-O-methyl 97.7 0.0002 4.2E-09 62.7 8.3 93 76-180 178-276 (342)
259 KOG2198 tRNA cytosine-5-methyl 97.7 0.00088 1.9E-08 59.0 12.0 128 72-199 152-317 (375)
260 PF07091 FmrO: Ribosomal RNA m 97.5 0.0004 8.6E-09 58.3 7.9 77 72-153 102-178 (251)
261 KOG1501 Arginine N-methyltrans 97.5 0.00022 4.7E-09 64.0 6.5 72 78-152 69-141 (636)
262 COG5459 Predicted rRNA methyla 97.5 0.00032 6.9E-09 61.3 6.6 123 76-198 114-246 (484)
263 PF01795 Methyltransf_5: MraW 97.4 0.00017 3.7E-09 62.6 4.6 77 75-152 20-99 (310)
264 COG4798 Predicted methyltransf 97.4 0.0039 8.6E-08 50.4 11.8 147 73-224 46-222 (238)
265 KOG2793 Putative N2,N2-dimethy 97.4 0.0043 9.4E-08 52.3 12.5 102 76-179 87-199 (248)
266 PHA01634 hypothetical protein 97.4 0.0011 2.3E-08 49.9 7.8 72 76-154 29-100 (156)
267 COG1064 AdhP Zn-dependent alco 97.4 0.001 2.2E-08 58.5 8.8 95 72-179 163-259 (339)
268 COG3129 Predicted SAM-dependen 97.4 0.00074 1.6E-08 55.9 7.3 130 14-154 25-161 (292)
269 PRK01747 mnmC bifunctional tRN 97.4 0.002 4.3E-08 62.2 11.5 135 76-223 58-239 (662)
270 cd00315 Cyt_C5_DNA_methylase C 97.3 0.0044 9.5E-08 53.3 12.1 135 78-224 2-164 (275)
271 PF04672 Methyltransf_19: S-ad 97.3 0.0073 1.6E-07 51.4 12.7 123 77-199 70-212 (267)
272 COG0275 Predicted S-adenosylme 97.3 0.0044 9.6E-08 53.4 11.1 78 74-152 22-102 (314)
273 PF04989 CmcI: Cephalosporin h 97.2 0.00089 1.9E-08 54.8 6.5 102 76-179 33-147 (206)
274 PF03141 Methyltransf_29: Puta 97.1 0.0045 9.8E-08 56.7 10.4 155 43-223 342-506 (506)
275 KOG1253 tRNA methyltransferase 97.1 0.00037 8E-09 63.4 3.0 106 74-179 108-216 (525)
276 KOG4058 Uncharacterized conser 97.1 0.0024 5.3E-08 49.3 7.0 98 76-179 73-172 (199)
277 COG0286 HsdM Type I restrictio 97.0 0.015 3.1E-07 54.2 13.1 104 76-179 187-326 (489)
278 KOG2352 Predicted spermine/spe 96.9 0.0058 1.3E-07 55.8 9.1 97 78-179 51-161 (482)
279 KOG2798 Putative trehalase [Ca 96.9 0.038 8.2E-07 48.0 13.1 130 76-208 151-339 (369)
280 cd08283 FDH_like_1 Glutathione 96.7 0.0076 1.6E-07 54.1 8.1 103 73-179 182-306 (386)
281 KOG1099 SAM-dependent methyltr 96.6 0.0083 1.8E-07 49.7 7.2 97 76-183 42-169 (294)
282 KOG1227 Putative methyltransfe 96.6 0.0011 2.5E-08 56.7 2.1 101 75-179 194-296 (351)
283 PF00145 DNA_methylase: C-5 cy 96.5 0.044 9.5E-07 47.6 11.2 135 78-224 2-163 (335)
284 KOG1596 Fibrillarin and relate 96.4 0.094 2E-06 44.0 12.2 105 73-179 154-261 (317)
285 PF07279 DUF1442: Protein of u 96.4 0.067 1.5E-06 44.0 11.1 101 76-181 42-150 (218)
286 KOG1562 Spermidine synthase [A 96.4 0.12 2.7E-06 44.5 12.7 107 72-179 118-236 (337)
287 PRK09880 L-idonate 5-dehydroge 96.3 0.023 5.1E-07 50.0 8.9 96 75-179 169-266 (343)
288 PF11599 AviRa: RRNA methyltra 96.3 0.014 3E-07 48.0 6.7 102 76-177 52-212 (246)
289 KOG0024 Sorbitol dehydrogenase 96.3 0.02 4.4E-07 49.8 8.0 102 72-179 166-273 (354)
290 KOG2671 Putative RNA methylase 96.2 0.0063 1.4E-07 53.3 4.4 104 73-180 206-355 (421)
291 PF04445 SAM_MT: Putative SAM- 96.2 0.021 4.6E-07 47.7 7.2 73 77-153 77-158 (234)
292 COG1063 Tdh Threonine dehydrog 96.2 0.032 7E-07 49.6 8.8 98 76-179 169-269 (350)
293 cd08237 ribitol-5-phosphate_DH 96.1 0.047 1E-06 48.1 9.3 92 74-179 162-256 (341)
294 PF07757 AdoMet_MTase: Predict 95.9 0.035 7.5E-07 40.6 6.3 32 76-109 59-90 (112)
295 KOG0822 Protein kinase inhibit 95.8 0.023 5E-07 52.4 6.3 97 77-177 369-476 (649)
296 PRK09424 pntA NAD(P) transhydr 95.8 0.065 1.4E-06 50.0 9.3 100 75-179 164-285 (509)
297 PF05430 Methyltransf_30: S-ad 95.8 0.022 4.8E-07 43.0 5.1 84 127-223 33-123 (124)
298 PF10354 DUF2431: Domain of un 95.7 0.12 2.5E-06 41.1 9.4 124 82-208 3-154 (166)
299 KOG2078 tRNA modification enzy 95.7 0.0065 1.4E-07 54.5 2.4 66 71-138 245-312 (495)
300 cd08254 hydroxyacyl_CoA_DH 6-h 95.6 0.075 1.6E-06 46.1 8.6 97 73-178 163-262 (338)
301 TIGR00675 dcm DNA-methyltransf 95.5 0.22 4.7E-06 43.7 11.3 132 79-223 1-160 (315)
302 COG0270 Dcm Site-specific DNA 95.5 0.19 4.1E-06 44.3 10.8 115 76-200 3-141 (328)
303 PF01555 N6_N4_Mtase: DNA meth 95.3 0.035 7.5E-07 45.4 5.4 42 74-117 190-231 (231)
304 KOG2651 rRNA adenine N-6-methy 95.3 0.033 7.2E-07 49.5 5.3 44 75-119 153-196 (476)
305 PF00107 ADH_zinc_N: Zinc-bind 95.3 0.016 3.4E-07 43.4 2.9 88 85-181 1-91 (130)
306 PRK11524 putative methyltransf 95.2 0.049 1.1E-06 47.0 6.0 46 74-121 207-252 (284)
307 cd08230 glucose_DH Glucose deh 95.2 0.12 2.7E-06 45.6 8.7 94 75-179 172-269 (355)
308 PF05711 TylF: Macrocin-O-meth 95.0 0.73 1.6E-05 39.0 12.4 124 76-201 75-233 (248)
309 PRK13699 putative methylase; P 94.9 0.082 1.8E-06 44.2 6.2 47 74-122 162-208 (227)
310 TIGR03451 mycoS_dep_FDH mycoth 94.8 0.14 3.1E-06 45.3 8.1 100 73-179 174-276 (358)
311 KOG3924 Putative protein methy 94.7 0.13 2.8E-06 46.0 7.3 107 73-179 190-308 (419)
312 TIGR02822 adh_fam_2 zinc-bindi 94.6 0.4 8.7E-06 42.0 10.2 91 73-179 163-254 (329)
313 cd05188 MDR Medium chain reduc 94.1 0.19 4.1E-06 41.8 6.9 98 74-180 133-233 (271)
314 PF05206 TRM13: Methyltransfer 94.1 0.13 2.8E-06 43.9 5.9 65 74-139 17-87 (259)
315 PTZ00357 methyltransferase; Pr 94.0 0.2 4.3E-06 48.1 7.3 97 78-174 703-830 (1072)
316 cd08281 liver_ADH_like1 Zinc-d 93.8 0.24 5.3E-06 44.1 7.3 97 73-179 189-290 (371)
317 KOG2920 Predicted methyltransf 93.7 0.057 1.2E-06 46.2 2.9 102 75-177 116-232 (282)
318 TIGR01202 bchC 2-desacetyl-2-h 93.7 0.35 7.6E-06 41.9 8.0 86 76-179 145-231 (308)
319 TIGR00936 ahcY adenosylhomocys 93.6 1.8 3.8E-05 39.4 12.5 89 75-181 194-284 (406)
320 PF06859 Bin3: Bicoid-interact 93.6 0.057 1.2E-06 39.6 2.4 34 146-179 1-44 (110)
321 KOG2352 Predicted spermine/spe 93.6 0.18 3.9E-06 46.3 6.1 106 74-179 294-416 (482)
322 TIGR03366 HpnZ_proposed putati 93.5 0.24 5.1E-06 42.3 6.5 96 75-179 120-218 (280)
323 PF03446 NAD_binding_2: NAD bi 93.3 0.82 1.8E-05 35.8 8.9 110 78-204 3-118 (163)
324 PRK10458 DNA cytosine methylas 93.1 7.3 0.00016 36.2 16.5 122 76-202 88-255 (467)
325 PRK13699 putative methylase; P 93.1 0.4 8.7E-06 40.0 7.1 74 128-205 3-95 (227)
326 cd08232 idonate-5-DH L-idonate 93.1 0.6 1.3E-05 40.7 8.6 93 75-179 165-262 (339)
327 PF02254 TrkA_N: TrkA-N domain 93.0 1.2 2.6E-05 32.4 8.8 90 84-180 4-97 (116)
328 PF02153 PDH: Prephenate dehyd 92.9 2.8 6E-05 35.6 12.1 104 90-208 2-106 (258)
329 TIGR00561 pntA NAD(P) transhyd 92.7 0.44 9.5E-06 44.6 7.3 93 76-176 164-281 (511)
330 PLN02740 Alcohol dehydrogenase 92.7 0.59 1.3E-05 41.8 8.0 97 73-179 196-300 (381)
331 PF02558 ApbA: Ketopantoate re 92.6 0.39 8.5E-06 36.8 6.0 89 85-181 5-103 (151)
332 PF02636 Methyltransf_28: Puta 92.5 0.33 7.2E-06 41.0 5.9 46 76-121 19-72 (252)
333 TIGR03201 dearomat_had 6-hydro 92.5 0.35 7.7E-06 42.6 6.3 100 73-179 164-272 (349)
334 PF05050 Methyltransf_21: Meth 92.4 0.4 8.6E-06 37.0 5.9 53 81-133 1-60 (167)
335 cd05278 FDH_like Formaldehyde 92.4 0.63 1.4E-05 40.6 7.8 99 73-178 165-266 (347)
336 cd08239 THR_DH_like L-threonin 92.4 0.6 1.3E-05 40.7 7.7 98 74-179 162-262 (339)
337 KOG2912 Predicted DNA methylas 92.3 0.17 3.6E-06 44.2 3.8 74 80-153 107-185 (419)
338 cd08285 NADP_ADH NADP(H)-depen 92.3 0.71 1.5E-05 40.6 8.0 98 73-179 164-266 (351)
339 PRK05786 fabG 3-ketoacyl-(acyl 92.1 3.2 7E-05 33.9 11.4 101 76-179 5-135 (238)
340 COG1748 LYS9 Saccharopine dehy 91.6 0.78 1.7E-05 41.4 7.4 72 77-154 2-76 (389)
341 PLN03154 putative allyl alcoho 91.5 1 2.3E-05 39.7 8.2 97 73-178 156-257 (348)
342 COG2933 Predicted SAM-dependen 91.5 0.69 1.5E-05 39.4 6.5 88 73-172 209-296 (358)
343 PRK10309 galactitol-1-phosphat 91.5 0.6 1.3E-05 41.0 6.6 99 74-179 159-260 (347)
344 PLN02827 Alcohol dehydrogenase 91.4 1 2.3E-05 40.3 8.1 97 73-179 191-295 (378)
345 KOG0023 Alcohol dehydrogenase, 91.3 0.69 1.5E-05 40.5 6.5 99 72-179 178-279 (360)
346 cd08255 2-desacetyl-2-hydroxye 91.3 1.8 3.9E-05 36.4 9.1 92 74-179 96-190 (277)
347 cd08261 Zn_ADH7 Alcohol dehydr 91.2 1 2.2E-05 39.2 7.7 98 74-179 158-258 (337)
348 COG4301 Uncharacterized conser 91.1 8.3 0.00018 32.8 12.3 101 76-178 79-192 (321)
349 COG1565 Uncharacterized conser 91.1 1.4 3.1E-05 39.1 8.3 46 76-121 78-131 (370)
350 TIGR02825 B4_12hDH leukotriene 91.0 1.4 3.1E-05 38.1 8.5 98 73-179 136-237 (325)
351 cd08294 leukotriene_B4_DH_like 90.9 1.2 2.5E-05 38.5 7.8 96 73-178 141-240 (329)
352 KOG2539 Mitochondrial/chloropl 90.9 0.36 7.7E-06 44.2 4.5 106 76-181 201-317 (491)
353 PRK11524 putative methyltransf 90.7 0.51 1.1E-05 40.7 5.3 73 126-203 8-100 (284)
354 PRK07806 short chain dehydroge 90.7 2.9 6.2E-05 34.5 9.7 103 76-180 6-135 (248)
355 cd08278 benzyl_alcohol_DH Benz 90.5 1.2 2.6E-05 39.5 7.6 97 73-179 184-285 (365)
356 PRK08293 3-hydroxybutyryl-CoA 90.4 3.6 7.8E-05 35.4 10.3 92 77-175 4-116 (287)
357 TIGR02818 adh_III_F_hyde S-(hy 90.4 2.1 4.5E-05 38.1 9.0 99 73-179 183-287 (368)
358 TIGR02819 fdhA_non_GSH formald 90.3 1.3 2.9E-05 39.9 7.8 100 73-179 183-299 (393)
359 KOG2360 Proliferation-associat 90.3 0.79 1.7E-05 41.0 6.0 64 74-137 212-276 (413)
360 PLN02586 probable cinnamyl alc 90.3 1.9 4.2E-05 38.2 8.7 94 74-178 182-277 (360)
361 cd05285 sorbitol_DH Sorbitol d 90.1 2.4 5.1E-05 37.1 9.1 98 73-178 160-264 (343)
362 COG2961 ComJ Protein involved 89.7 12 0.00025 31.8 13.1 144 74-222 88-243 (279)
363 PRK05708 2-dehydropantoate 2-r 89.7 3 6.5E-05 36.3 9.3 104 77-188 3-114 (305)
364 PRK08945 putative oxoacyl-(acy 89.7 2.3 4.9E-05 35.2 8.3 78 76-154 12-100 (247)
365 cd08300 alcohol_DH_class_III c 89.7 3.1 6.8E-05 36.9 9.6 100 73-179 184-288 (368)
366 COG4627 Uncharacterized protei 89.7 0.17 3.6E-06 39.7 1.2 76 78-179 5-86 (185)
367 COG0604 Qor NADPH:quinone redu 89.5 1.3 2.9E-05 38.9 7.0 100 73-180 140-242 (326)
368 cd08245 CAD Cinnamyl alcohol d 89.4 3.9 8.4E-05 35.3 9.8 95 74-179 161-256 (330)
369 PRK05476 S-adenosyl-L-homocyst 89.3 3.8 8.3E-05 37.5 9.9 95 75-187 211-307 (425)
370 COG1062 AdhC Zn-dependent alco 89.2 1.1 2.4E-05 39.5 6.1 99 72-179 182-285 (366)
371 PF02737 3HCDH_N: 3-hydroxyacy 89.1 5.3 0.00011 32.0 9.7 99 79-187 2-122 (180)
372 PRK07530 3-hydroxybutyryl-CoA 89.1 7.2 0.00016 33.5 11.2 92 77-176 5-116 (292)
373 cd08234 threonine_DH_like L-th 89.1 4.5 9.8E-05 34.9 10.0 97 74-179 158-257 (334)
374 COG0677 WecC UDP-N-acetyl-D-ma 89.1 1.2 2.6E-05 40.2 6.2 114 77-201 10-151 (436)
375 TIGR01761 thiaz-red thiazoliny 88.9 4 8.6E-05 36.3 9.5 112 76-202 3-119 (343)
376 COG4121 Uncharacterized conser 88.9 4.6 9.9E-05 34.3 9.4 136 76-224 59-242 (252)
377 cd08293 PTGR2 Prostaglandin re 88.7 2.1 4.6E-05 37.3 7.7 91 77-178 156-253 (345)
378 cd08242 MDR_like Medium chain 88.5 4.1 9E-05 35.0 9.4 88 74-178 154-244 (319)
379 COG1255 Uncharacterized protei 88.5 2.4 5.2E-05 31.5 6.5 82 76-172 14-97 (129)
380 PF01408 GFO_IDH_MocA: Oxidore 88.3 5.9 0.00013 28.7 8.9 109 78-200 2-115 (120)
381 PLN02494 adenosylhomocysteinas 88.3 3.7 8.1E-05 38.1 9.1 88 76-180 254-342 (477)
382 PF03721 UDPG_MGDP_dh_N: UDP-g 88.2 4.4 9.5E-05 32.6 8.6 88 85-179 7-120 (185)
383 cd08295 double_bond_reductase_ 88.1 2.7 5.8E-05 36.7 8.0 97 73-178 149-250 (338)
384 cd08236 sugar_DH NAD(P)-depend 88.1 1.7 3.6E-05 37.9 6.7 96 74-179 158-258 (343)
385 PF11899 DUF3419: Protein of u 88.0 1.6 3.5E-05 39.3 6.5 46 73-120 33-78 (380)
386 PF04378 RsmJ: Ribosomal RNA s 88.0 5.8 0.00013 33.5 9.4 117 83-202 63-187 (245)
387 cd08286 FDH_like_ADH2 formalde 88.0 2.9 6.2E-05 36.5 8.1 98 74-178 165-265 (345)
388 PLN03209 translocon at the inn 87.9 2.5 5.4E-05 40.2 7.9 80 74-154 78-167 (576)
389 cd08233 butanediol_DH_like (2R 87.8 3.1 6.7E-05 36.5 8.2 98 74-179 171-272 (351)
390 KOG0022 Alcohol dehydrogenase, 87.8 1.3 2.9E-05 38.7 5.5 47 71-117 188-235 (375)
391 cd08277 liver_alcohol_DH_like 87.8 4.7 0.0001 35.7 9.4 99 73-179 182-286 (365)
392 cd08265 Zn_ADH3 Alcohol dehydr 87.8 3.9 8.4E-05 36.5 8.9 100 73-178 201-306 (384)
393 PF11312 DUF3115: Protein of u 87.7 2 4.2E-05 37.6 6.6 110 76-185 87-248 (315)
394 PRK15057 UDP-glucose 6-dehydro 87.3 8.8 0.00019 34.7 10.9 33 85-117 7-40 (388)
395 cd08231 MDR_TM0436_like Hypoth 87.3 5.7 0.00012 34.9 9.6 97 75-179 177-280 (361)
396 cd00401 AdoHcyase S-adenosyl-L 87.0 3.9 8.5E-05 37.3 8.4 87 75-179 201-289 (413)
397 PLN02178 cinnamyl-alcohol dehy 86.9 4.5 9.8E-05 36.2 8.8 93 75-178 178-272 (375)
398 KOG1201 Hydroxysteroid 17-beta 86.6 3.3 7.1E-05 35.9 7.2 75 76-154 38-122 (300)
399 TIGR00518 alaDH alanine dehydr 86.5 1.5 3.3E-05 39.3 5.5 95 76-178 167-266 (370)
400 cd08238 sorbose_phosphate_red 86.5 3.6 7.9E-05 37.2 8.1 104 73-179 173-288 (410)
401 TIGR00692 tdh L-threonine 3-de 86.3 4.5 9.8E-05 35.2 8.4 98 74-179 160-261 (340)
402 PRK06940 short chain dehydroge 86.3 3.7 8E-05 34.8 7.6 75 77-154 3-84 (275)
403 PRK06130 3-hydroxybutyryl-CoA 86.3 9.7 0.00021 33.0 10.4 91 77-174 5-110 (311)
404 PRK05808 3-hydroxybutyryl-CoA 86.2 8.5 0.00018 32.9 9.9 90 78-177 5-116 (282)
405 cd05281 TDH Threonine dehydrog 86.1 4.5 9.7E-05 35.3 8.3 99 74-179 162-262 (341)
406 PRK07102 short chain dehydroge 86.1 4.8 0.0001 33.1 8.1 76 77-153 2-83 (243)
407 PRK06035 3-hydroxyacyl-CoA deh 86.0 7.5 0.00016 33.4 9.5 90 77-176 4-118 (291)
408 cd08301 alcohol_DH_plants Plan 86.0 6.1 0.00013 34.9 9.1 97 73-179 185-289 (369)
409 PRK07904 short chain dehydroge 85.9 5.4 0.00012 33.4 8.4 78 75-153 7-94 (253)
410 COG2084 MmsB 3-hydroxyisobutyr 85.9 6.6 0.00014 34.0 8.8 105 85-203 7-118 (286)
411 PRK03659 glutathione-regulated 85.8 6.2 0.00014 37.8 9.6 94 77-179 401-498 (601)
412 COG0686 Ald Alanine dehydrogen 85.5 3.6 7.7E-05 36.1 6.9 93 76-176 168-265 (371)
413 PRK09260 3-hydroxybutyryl-CoA 85.4 8.4 0.00018 33.1 9.4 101 78-187 3-125 (288)
414 PLN02514 cinnamyl-alcohol dehy 85.2 7.8 0.00017 34.2 9.4 96 74-179 179-275 (357)
415 PRK06522 2-dehydropantoate 2-r 85.2 11 0.00024 32.2 10.2 93 78-180 2-101 (304)
416 COG0287 TyrA Prephenate dehydr 85.0 5.4 0.00012 34.4 7.9 90 76-176 3-95 (279)
417 PRK07326 short chain dehydroge 84.8 5.5 0.00012 32.5 7.8 76 76-154 6-90 (237)
418 PF01210 NAD_Gly3P_dh_N: NAD-d 84.7 3.6 7.8E-05 32.0 6.3 94 79-179 2-103 (157)
419 cd08263 Zn_ADH10 Alcohol dehyd 84.7 4.1 8.9E-05 36.0 7.4 97 74-179 186-287 (367)
420 PRK08324 short chain dehydroge 84.6 11 0.00024 36.7 10.8 102 76-180 422-558 (681)
421 TIGR00872 gnd_rel 6-phosphoglu 84.5 8.6 0.00019 33.3 9.2 111 78-202 2-115 (298)
422 cd08296 CAD_like Cinnamyl alco 84.5 6 0.00013 34.4 8.3 96 74-179 162-259 (333)
423 PRK07819 3-hydroxybutyryl-CoA 84.4 12 0.00027 32.2 10.0 103 77-187 6-129 (286)
424 PRK10669 putative cation:proto 84.2 4.1 8.9E-05 38.6 7.5 93 77-179 418-515 (558)
425 PRK07454 short chain dehydroge 84.1 8.7 0.00019 31.5 8.7 77 76-154 6-91 (241)
426 PRK09291 short chain dehydroge 83.6 6 0.00013 32.7 7.6 77 76-154 2-81 (257)
427 cd08291 ETR_like_1 2-enoyl thi 83.6 5.2 0.00011 34.6 7.4 94 76-179 143-242 (324)
428 cd08279 Zn_ADH_class_III Class 83.5 4.9 0.00011 35.5 7.4 98 73-179 180-282 (363)
429 PF03686 UPF0146: Uncharacteri 83.4 3.1 6.7E-05 31.4 5.0 87 76-179 14-102 (127)
430 PLN02350 phosphogluconate dehy 83.0 17 0.00037 34.1 10.8 119 78-203 8-130 (493)
431 cd08267 MDR1 Medium chain dehy 83.0 11 0.00024 31.9 9.3 98 73-179 141-240 (319)
432 cd08241 QOR1 Quinone oxidoredu 82.9 7.8 0.00017 32.7 8.2 95 73-178 137-237 (323)
433 PLN02989 cinnamyl-alcohol dehy 82.9 4.5 9.8E-05 35.0 6.8 78 76-154 5-85 (325)
434 PTZ00142 6-phosphogluconate de 82.9 26 0.00057 32.6 12.0 120 78-203 3-124 (470)
435 PRK08703 short chain dehydroge 82.8 6.9 0.00015 32.1 7.6 59 76-135 6-66 (239)
436 KOG1098 Putative SAM-dependent 82.7 1.4 3.1E-05 41.8 3.7 93 73-176 42-155 (780)
437 TIGR00497 hsdM type I restrict 82.7 42 0.00091 31.4 14.1 104 75-179 217-355 (501)
438 KOG2811 Uncharacterized conser 82.7 8.9 0.00019 34.3 8.3 63 76-139 183-248 (420)
439 TIGR01963 PHB_DH 3-hydroxybuty 82.7 8 0.00017 31.8 8.0 75 78-154 3-86 (255)
440 PRK05396 tdh L-threonine 3-deh 82.5 6.5 0.00014 34.2 7.7 98 75-179 163-263 (341)
441 PRK06124 gluconate 5-dehydroge 82.5 9.6 0.00021 31.5 8.4 77 76-154 11-96 (256)
442 PRK08339 short chain dehydroge 82.4 10 0.00022 31.9 8.6 78 76-154 8-93 (263)
443 PRK15182 Vi polysaccharide bio 82.1 17 0.00036 33.4 10.4 39 76-116 6-45 (425)
444 PLN02819 lysine-ketoglutarate 81.9 8.3 0.00018 39.4 8.9 74 76-154 569-656 (1042)
445 PRK06949 short chain dehydroge 81.9 10 0.00023 31.3 8.4 77 76-154 9-94 (258)
446 cd05284 arabinose_DH_like D-ar 81.8 11 0.00023 32.7 8.8 96 74-178 166-265 (340)
447 cd05213 NAD_bind_Glutamyl_tRNA 81.6 8.5 0.00018 33.6 8.0 90 76-179 178-272 (311)
448 PRK07066 3-hydroxybutyryl-CoA 81.4 19 0.0004 31.8 10.0 92 77-175 8-115 (321)
449 PRK07523 gluconate 5-dehydroge 81.4 10 0.00022 31.4 8.2 77 76-154 10-95 (255)
450 PRK03562 glutathione-regulated 81.4 9.9 0.00021 36.6 9.0 94 76-178 400-497 (621)
451 cd05564 PTS_IIB_chitobiose_lic 81.4 7 0.00015 27.8 6.2 66 82-171 4-69 (96)
452 COG3510 CmcI Cephalosporin hyd 81.1 8.5 0.00018 31.4 7.0 100 76-180 70-181 (237)
453 PRK08213 gluconate 5-dehydroge 81.1 11 0.00024 31.2 8.3 77 76-154 12-97 (259)
454 PTZ00075 Adenosylhomocysteinas 81.1 17 0.00036 33.9 9.9 85 76-179 254-341 (476)
455 PRK12921 2-dehydropantoate 2-r 81.0 26 0.00056 30.0 10.8 93 78-179 2-102 (305)
456 PRK12490 6-phosphogluconate de 81.0 19 0.00042 31.1 10.0 105 85-201 7-115 (299)
457 cd05279 Zn_ADH1 Liver alcohol 80.9 9.1 0.0002 33.9 8.1 99 73-179 181-285 (365)
458 PRK14106 murD UDP-N-acetylmura 80.9 22 0.00048 32.4 10.9 70 76-153 5-75 (450)
459 PRK06128 oxidoreductase; Provi 80.9 23 0.0005 30.3 10.4 102 76-179 55-191 (300)
460 PRK09422 ethanol-active dehydr 80.8 10 0.00022 32.8 8.3 95 74-179 161-261 (338)
461 cd08243 quinone_oxidoreductase 80.7 13 0.00028 31.6 8.8 94 74-178 141-237 (320)
462 PRK07814 short chain dehydroge 80.3 12 0.00027 31.2 8.4 77 76-154 10-95 (263)
463 TIGR03026 NDP-sugDHase nucleot 80.3 31 0.00068 31.2 11.5 92 79-179 3-120 (411)
464 PRK11064 wecC UDP-N-acetyl-D-m 79.9 45 0.00097 30.4 12.3 38 77-114 4-41 (415)
465 PLN02702 L-idonate 5-dehydroge 79.6 15 0.00033 32.3 9.1 100 74-179 180-285 (364)
466 PRK10083 putative oxidoreducta 79.4 13 0.00029 32.1 8.5 98 74-179 159-259 (339)
467 PRK08306 dipicolinate synthase 78.7 11 0.00024 32.6 7.7 89 76-179 152-241 (296)
468 PRK06701 short chain dehydroge 78.6 18 0.00038 31.0 9.0 102 76-179 46-181 (290)
469 PRK05225 ketol-acid reductoiso 78.4 3.6 7.8E-05 38.0 4.6 90 76-182 36-134 (487)
470 PRK07666 fabG 3-ketoacyl-(acyl 78.0 16 0.00036 29.7 8.3 77 76-154 7-92 (239)
471 PRK05867 short chain dehydroge 78.0 15 0.00032 30.4 8.1 77 76-154 9-94 (253)
472 PRK07502 cyclohexadienyl dehyd 77.9 28 0.00061 30.1 10.1 88 76-177 6-98 (307)
473 cd08240 6_hydroxyhexanoate_dh_ 77.9 12 0.00026 32.7 7.8 94 75-178 175-273 (350)
474 PRK06139 short chain dehydroge 77.8 11 0.00023 33.2 7.4 77 76-154 7-92 (330)
475 PRK07576 short chain dehydroge 77.8 16 0.00036 30.5 8.4 77 76-154 9-94 (264)
476 PF01488 Shikimate_DH: Shikima 77.5 7.4 0.00016 29.4 5.6 71 76-154 12-83 (135)
477 cd08287 FDH_like_ADH3 formalde 77.3 15 0.00033 31.9 8.3 97 74-179 167-268 (345)
478 PRK06125 short chain dehydroge 77.3 18 0.0004 30.0 8.5 78 76-154 7-89 (259)
479 TIGR00853 pts-lac PTS system, 77.2 10 0.00022 27.0 5.9 54 77-153 4-57 (95)
480 cd05565 PTS_IIB_lactose PTS_II 77.2 7.4 0.00016 28.0 5.2 72 82-177 5-76 (99)
481 TIGR01692 HIBADH 3-hydroxyisob 77.2 24 0.00053 30.2 9.4 104 85-203 3-113 (288)
482 cd08284 FDH_like_2 Glutathione 76.9 15 0.00032 31.8 8.2 94 74-179 166-266 (344)
483 PRK09548 PTS system ascorbate- 76.8 34 0.00073 32.8 10.7 57 76-154 506-562 (602)
484 TIGR01771 L-LDH-NAD L-lactate 76.7 13 0.00029 32.3 7.6 74 100-181 22-115 (299)
485 cd05286 QOR2 Quinone oxidoredu 76.6 16 0.00035 30.7 8.1 96 73-179 134-235 (320)
486 cd08260 Zn_ADH6 Alcohol dehydr 76.6 13 0.00027 32.4 7.6 94 74-178 164-263 (345)
487 PF08484 Methyltransf_14: C-me 76.6 8 0.00017 30.4 5.7 86 76-178 68-158 (160)
488 cd05293 LDH_1 A subgroup of L- 76.6 30 0.00064 30.3 9.8 96 76-181 3-122 (312)
489 PRK12384 sorbitol-6-phosphate 76.5 18 0.00038 30.0 8.2 78 76-154 2-89 (259)
490 PF03435 Saccharop_dh: Sacchar 76.5 7.2 0.00016 34.9 6.1 70 79-153 1-74 (386)
491 PRK07677 short chain dehydroge 76.4 19 0.00041 29.7 8.3 76 77-154 2-86 (252)
492 PF13487 HD_5: HD domain; PDB: 76.4 1.1 2.4E-05 29.4 0.6 13 3-15 42-54 (64)
493 cd08282 PFDH_like Pseudomonas 76.2 14 0.0003 32.9 7.8 99 74-178 175-284 (375)
494 PF10237 N6-adenineMlase: Prob 76.2 2.5 5.4E-05 33.4 2.7 95 76-181 26-125 (162)
495 PRK06181 short chain dehydroge 76.2 19 0.0004 29.9 8.3 76 77-154 2-86 (263)
496 PF00072 Response_reg: Respons 75.8 17 0.00036 25.5 6.9 85 102-189 1-88 (112)
497 COG0863 DNA modification methy 75.8 13 0.00028 31.7 7.3 46 75-122 222-267 (302)
498 PLN02668 indole-3-acetate carb 75.7 2.3 4.9E-05 38.4 2.6 23 157-179 215-237 (386)
499 PRK12826 3-ketoacyl-(acyl-carr 75.7 18 0.00039 29.5 8.0 77 76-154 6-91 (251)
500 PRK09135 pteridine reductase; 75.7 20 0.00043 29.2 8.3 78 76-154 6-93 (249)
No 1
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=100.00 E-value=1.2e-31 Score=217.17 Aligned_cols=186 Identities=41% Similarity=0.656 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHhccCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHCCC
Q 026122 20 YLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPD 99 (243)
Q Consensus 20 ~l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~ 99 (243)
.+..|...+.+||+.+|+++.+++++.|.+|++|++.+.++++ ++.+|||+|||+|..++.+++..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~l~~~l~------------~g~~VLDiGcGtG~~al~la~~~~~ 69 (187)
T PRK00107 2 QLEAYVELLVKWNKKYNLTAIRDPEELWERHILDSLAIAPYLP------------GGERVLDVGSGAGFPGIPLAIARPE 69 (187)
T ss_pred hHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHhhcC------------CCCeEEEEcCCCCHHHHHHHHHCCC
Confidence 5789999999999999999999999999999999988776554 3789999999999999999988888
Q ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 100 WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 100 ~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
++|+++|+|+++++.++++++.+++++++++++|+.++.. .++||+|++++..++..+++.+.+.|+|||.+++..
T Consensus 70 ~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~----~~~fDlV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 70 LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ----EEKFDVVTSRAVASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC----CCCccEEEEccccCHHHHHHHHHHhcCCCeEEEEEe
Confidence 9999999999999999999999999889999999998754 268999999998899999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEee
Q 026122 180 GHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS 224 (243)
Q Consensus 180 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~ 224 (243)
+.....++.++.. ..|+.+.....+..++.++++|+++++|+
T Consensus 146 ~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 146 GRDPEEEIAELPK---ALGGKVEEVIELTLPGLDGERHLVIIRKK 187 (187)
T ss_pred CCChHHHHHHHHH---hcCceEeeeEEEecCCCCCcEEEEEEecC
Confidence 8877776655544 67999999999999999999999999984
No 2
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=3.4e-30 Score=210.68 Aligned_cols=203 Identities=39% Similarity=0.617 Sum_probs=185.0
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHhccCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCC
Q 026122 8 GYPFSVFMFMFFYLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAG 87 (243)
Q Consensus 8 ~~~~~~~~~~~~~l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G 87 (243)
+.-.++.....+++..|.+.+.+||+.+|+|++++.+++|.+|++||+.+.+..+. . +.+++|||+|.|
T Consensus 11 ~~~~~~~~~~~~~l~~Y~~lL~~wN~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~----------~-~~~~~DIGSGaG 79 (215)
T COG0357 11 GLGLSVTEEQLEKLEAYVELLLKWNKAYNLTAIRDPEELWQRHILDSLVLLPYLDG----------K-AKRVLDIGSGAG 79 (215)
T ss_pred hccCCccHHHHHHHHHHHHHHHHhhHhcCCCCCCCHHHHHHHHHHHHhhhhhcccc----------c-CCEEEEeCCCCC
Confidence 34456778899999999999999999999999999999999999999998876651 0 479999999999
Q ss_pred hHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCC-ceEEEEcCcccHHHHHHHHc
Q 026122 88 LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQ-YDVAVARAVAEMRILAEYCL 166 (243)
Q Consensus 88 ~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~-fD~I~~~~~~~~~~~l~~~~ 166 (243)
.+|+.+|..+|+.+||.+|...+.+.+.++..+.++++|+++++++++++... .. ||+|+|++++++..+.+.+.
T Consensus 80 fPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~----~~~~D~vtsRAva~L~~l~e~~~ 155 (215)
T COG0357 80 FPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE----KKQYDVVTSRAVASLNVLLELCL 155 (215)
T ss_pred CchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc----cccCcEEEeehccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998753 23 99999999999999999999
Q ss_pred cCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEeeC
Q 026122 167 PLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSR 225 (243)
Q Consensus 167 ~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~~ 225 (243)
.++|+||.++++.+....++..+...+....|+....+..+..+..+++|+++++++.+
T Consensus 156 pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~~~r~l~ii~~~k 214 (215)
T COG0357 156 PLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVPELDGERHLVIIRKRK 214 (215)
T ss_pred HhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecCCCCCceEEEEEeccC
Confidence 99999999988887777788888888889999999999999999888899999998864
No 3
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=99.97 E-value=1.6e-29 Score=203.57 Aligned_cols=183 Identities=40% Similarity=0.628 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHHHhccCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHC
Q 026122 18 FFYLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIAC 97 (243)
Q Consensus 18 ~~~l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~ 97 (243)
.+++..|.+++.+||+.+|+|+.++.+++|.+|++||+.+.+.++.. +.+++|||+|.|.+|+.+|..+
T Consensus 2 ~~~l~~y~~lL~~~N~~~NLt~~~~~~~~~~~Hi~DSL~~~~~~~~~-----------~~~~lDiGSGaGfPGipLaI~~ 70 (184)
T PF02527_consen 2 IEKLEQYLELLLEWNKKINLTSIRDPEEIWERHILDSLALLPFLPDF-----------GKKVLDIGSGAGFPGIPLAIAR 70 (184)
T ss_dssp HHHHHHHHHHHHHHHHCSSS-S--SHHHHHHHHHHHHHGGGGCS-CC-----------CSEEEEETSTTTTTHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCceeeeccCCCHHHHHHHHHHHHHHhhhhhccC-----------CceEEecCCCCCChhHHHHHhC
Confidence 36799999999999999999999999999999999999998877631 3389999999999999999999
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCcccHHHHHHHHccCcccCeEEEE
Q 026122 98 PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVA 177 (243)
Q Consensus 98 ~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~ 177 (243)
|+.+++.+|.+.+.+.+.+..++.++++|++++++++++ .. ...+||+|+++++.++..+++.+.+.+++||.+++
T Consensus 71 p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~---~~~~fd~v~aRAv~~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 71 PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PE---YRESFDVVTARAVAPLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TT---TTT-EEEEEEESSSSHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cc---cCCCccEEEeehhcCHHHHHHHHHHhcCCCCEEEE
Confidence 999999999999999999999999999999999999999 22 13789999999999999999999999999999999
Q ss_pred EeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEE
Q 026122 178 AKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAV 219 (243)
Q Consensus 178 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v 219 (243)
+.|....+|+.++...++..+.....+.++.. .+|++|
T Consensus 147 ~KG~~~~~El~~~~~~~~~~~~~~~~v~~~~~----~~r~l~ 184 (184)
T PF02527_consen 147 YKGPDAEEELEEAKKAWKKLGLKVLSVPEFEL----PERHLV 184 (184)
T ss_dssp EESS--HHHHHTHHHHHHCCCEEEEEEEEEE-----TEEEEE
T ss_pred EcCCChHHHHHHHHhHHHHhCCEEeeeccccC----CCCCCC
Confidence 99999999999999999999999988887663 357765
No 4
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.97 E-value=2.5e-29 Score=202.90 Aligned_cols=180 Identities=38% Similarity=0.616 Sum_probs=158.8
Q ss_pred HHHHHHHHHHhccCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHCCCCE
Q 026122 22 GLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWK 101 (243)
Q Consensus 22 ~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~~ 101 (243)
..|...++++|+++|+|++.+..++|.+++.+.+.....+. +.+|||+|||+|.+++.++...++.+
T Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~i~~~~~~~-------------~~~vLDiGcGtG~~s~~la~~~~~~~ 68 (181)
T TIGR00138 2 KAYLELLQKWNKRFNLTSLKTPEEIWERHILDSLKLLEYLD-------------GKKVIDIGSGAGFPGIPLAIARPELK 68 (181)
T ss_pred HHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHhcC-------------CCeEEEecCCCCccHHHHHHHCCCCe
Confidence 56889999999999999999999999999999886554443 78999999999999999998888889
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCcccHHHHHHHHccCcccCeEEEEEeCC
Q 026122 102 VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGH 181 (243)
Q Consensus 102 v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (243)
|+|+|+|+.+++.++++++++++++++++++|+.++.. .++||+|++++..++..+++.+.++|+|||.+++..+.
T Consensus 69 V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~----~~~fD~I~s~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 144 (181)
T TIGR00138 69 LTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH----EEQFDVITSRALASLNVLLELTLNLLKVGGYFLAYKGK 144 (181)
T ss_pred EEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc----cCCccEEEehhhhCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 99999999999999999999998889999999998642 26899999998878899999999999999999999998
Q ss_pred CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEE
Q 026122 182 DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCL 222 (243)
Q Consensus 182 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~ 222 (243)
....++..+.+.+...|+..++..++..+ .|++++++
T Consensus 145 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~----~~~~~~~~ 181 (181)
T TIGR00138 145 KYLDEIEEAKRKCQVLGVEPLEVPPLTGP----DRHLVILK 181 (181)
T ss_pred CcHHHHHHHHHhhhhcCceEeeccccCCC----ceEEEEEC
Confidence 88888888888888899998888776644 68887763
No 5
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.89 E-value=8.7e-22 Score=163.91 Aligned_cols=141 Identities=19% Similarity=0.201 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHhccCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHCCC
Q 026122 20 YLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPD 99 (243)
Q Consensus 20 ~l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~ 99 (243)
.+...++.+....+.+|..---+.+..|++...+.+... +|.+|||||||||..++.+++..+.
T Consensus 12 ~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~----------------~g~~vLDva~GTGd~a~~~~k~~g~ 75 (238)
T COG2226 12 KVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIK----------------PGDKVLDVACGTGDMALLLAKSVGT 75 (238)
T ss_pred HHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCC----------------CCCEEEEecCCccHHHHHHHHhcCC
Confidence 456666666666666664333467889999998876543 2899999999999999999999888
Q ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc----CcccHHHHHHHHccCcccCeEE
Q 026122 100 WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR----AVAEMRILAEYCLPLVRVGGLF 175 (243)
Q Consensus 100 ~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~----~~~~~~~~l~~~~~~LkpgG~l 175 (243)
++|+|+|+|+.|++.+++.....+..+++++++|+++++.++ ++||+|.+. ++.+++..++++.|+|||||++
T Consensus 76 g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D---~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~ 152 (238)
T COG2226 76 GEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPD---NSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRL 152 (238)
T ss_pred ceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCC---CccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEE
Confidence 999999999999999999999988877999999999999875 899999984 5789999999999999999998
Q ss_pred EEEe
Q 026122 176 VAAK 179 (243)
Q Consensus 176 ~~~~ 179 (243)
++..
T Consensus 153 ~vle 156 (238)
T COG2226 153 LVLE 156 (238)
T ss_pred EEEE
Confidence 8876
No 6
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.87 E-value=7.4e-21 Score=158.47 Aligned_cols=146 Identities=16% Similarity=0.204 Sum_probs=122.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
.++|||+|||+|.+++.+|++.+.++|+|||+++++.++|+++.+.+++. +++++++|+.++..... ..+||+|+||.
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~-~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV-FASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc-ccccCEEEeCC
Confidence 78999999999999999999877899999999999999999999999986 59999999999876432 24699999972
Q ss_pred ----------------------cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCC
Q 026122 155 ----------------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212 (243)
Q Consensus 155 ----------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 212 (243)
..+++++++.+.++|||||.++++..+ +.+.++.+.++..++...++..++ +..
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---erl~ei~~~l~~~~~~~k~i~~V~-p~~ 199 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---ERLAEIIELLKSYNLEPKRIQFVY-PKI 199 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH---HHHHHHHHHHHhcCCCceEEEEec-CCC
Confidence 225899999999999999999998874 566777888889999999998766 777
Q ss_pred CCceEEEEEEeeCC
Q 026122 213 FGQRTAVVCLKSRR 226 (243)
Q Consensus 213 ~~~r~~v~~~k~~~ 226 (243)
++..++|+++-...
T Consensus 200 ~k~A~~vLv~~~k~ 213 (248)
T COG4123 200 GKAANRVLVEAIKG 213 (248)
T ss_pred CCcceEEEEEEecC
Confidence 77666666665433
No 7
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.85 E-value=6.5e-21 Score=159.57 Aligned_cols=141 Identities=18% Similarity=0.207 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhccCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHC-C
Q 026122 20 YLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIAC-P 98 (243)
Q Consensus 20 ~l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~ 98 (243)
++...++.+....+.+|-.---..+..|++.+.+.+.. .++.+|||+|||||.++..+++.. +
T Consensus 8 ~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~----------------~~g~~vLDv~~GtG~~~~~l~~~~~~ 71 (233)
T PF01209_consen 8 YVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGL----------------RPGDRVLDVACGTGDVTRELARRVGP 71 (233)
T ss_dssp -----------------------------SHHHHHHT------------------S--EEEEET-TTSHHHHHHGGGSS-
T ss_pred HHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCC----------------CCCCEEEEeCCChHHHHHHHHHHCCC
Confidence 35556666666666665543345678899988776533 227899999999999998888764 5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc----CcccHHHHHHHHccCcccCeE
Q 026122 99 DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR----AVAEMRILAEYCLPLVRVGGL 174 (243)
Q Consensus 99 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~----~~~~~~~~l~~~~~~LkpgG~ 174 (243)
.++|+|+|+|+.|++.+++..+..+..+++++++|+++++..+ ++||+|++. .+.++...++++.|+|||||+
T Consensus 72 ~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d---~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~ 148 (233)
T PF01209_consen 72 NGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD---NSFDAVTCSFGLRNFPDRERALREMYRVLKPGGR 148 (233)
T ss_dssp --EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T---T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEE
T ss_pred ccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC---CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeE
Confidence 6899999999999999999999988889999999999998764 899999974 466899999999999999999
Q ss_pred EEEEe
Q 026122 175 FVAAK 179 (243)
Q Consensus 175 l~~~~ 179 (243)
+++.+
T Consensus 149 l~ile 153 (233)
T PF01209_consen 149 LVILE 153 (233)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 99876
No 8
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.83 E-value=8e-19 Score=146.74 Aligned_cols=158 Identities=19% Similarity=0.180 Sum_probs=119.1
Q ss_pred hHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH
Q 026122 43 VNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSL 121 (243)
Q Consensus 43 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~ 121 (243)
....|.+.++..+.+ +++.+|||+|||+|..+..++... ++++|+|+|+|+.+++.++++.+.
T Consensus 29 ~~~~~~~~~l~~l~~----------------~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~ 92 (231)
T TIGR02752 29 RHKKWRKDTMKRMNV----------------QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKD 92 (231)
T ss_pred chHHHHHHHHHhcCC----------------CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHh
Confidence 355666666664432 237899999999999998898775 568999999999999999999988
Q ss_pred cCCCCEEEEEccccccccCCcCCCCceEEEEcC----cccHHHHHHHHccCcccCeEEEEEeCCCc-HH-----------
Q 026122 122 TQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEYCLPLVRVGGLFVAAKGHDP-QE----------- 185 (243)
Q Consensus 122 ~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~----------- 185 (243)
.++.+++++++|+.+++.. .++||+|++.. ..++..+++++.++|+|||.+++...... ..
T Consensus 93 ~~~~~v~~~~~d~~~~~~~---~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~ 169 (231)
T TIGR02752 93 AGLHNVELVHGNAMELPFD---DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFK 169 (231)
T ss_pred cCCCceEEEEechhcCCCC---CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHc
Confidence 8887899999999887543 26899999853 45788999999999999999988653211 00
Q ss_pred ----------------------------HHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEe
Q 026122 186 ----------------------------EVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK 223 (243)
Q Consensus 186 ----------------------------~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k 223 (243)
...++.+.++.+||...+++.+. .+...+++..|
T Consensus 170 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~----~g~~~~~~~~~ 231 (231)
T TIGR02752 170 YIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYT----GGVAAMHMGFK 231 (231)
T ss_pred ChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcc----cceEEEEEEEC
Confidence 01456678889999888776533 34555555443
No 9
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.82 E-value=5.4e-19 Score=140.45 Aligned_cols=122 Identities=20% Similarity=0.266 Sum_probs=109.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
.++.+++|||||||.+++.++...|.++|+++|.++++++..++|+++++.+|++++.+++.+..... .++|.||..
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~---~~~daiFIG 109 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL---PSPDAIFIG 109 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC---CCCCEEEEC
Confidence 44899999999999999999988999999999999999999999999999999999999998875432 379999998
Q ss_pred CcccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCe
Q 026122 154 AVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGAS 200 (243)
Q Consensus 154 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~ 200 (243)
+..+++.+++.+...|||||++++ ...+.+....+.+++++.|+.
T Consensus 110 Gg~~i~~ile~~~~~l~~ggrlV~--naitlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 110 GGGNIEEILEAAWERLKPGGRLVA--NAITLETLAKALEALEQLGGR 154 (187)
T ss_pred CCCCHHHHHHHHHHHcCcCCeEEE--EeecHHHHHHHHHHHHHcCCc
Confidence 889999999999999999999887 444566777888999999994
No 10
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.82 E-value=2.7e-18 Score=146.40 Aligned_cols=142 Identities=13% Similarity=0.089 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHhccCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHC-
Q 026122 19 FYLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIAC- 97 (243)
Q Consensus 19 ~~l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~- 97 (243)
+.+..+++.+....+..|.......++.|++...+.+.+ +++.+|||+|||+|..+..++...
T Consensus 33 ~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~----------------~~~~~VLDlGcGtG~~~~~la~~~~ 96 (261)
T PLN02233 33 NERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGA----------------KMGDRVLDLCCGSGDLAFLLSEKVG 96 (261)
T ss_pred HHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCC----------------CCCCEEEEECCcCCHHHHHHHHHhC
Confidence 345545555544444444332234466787765554322 237899999999999998888764
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHH---cCCCCEEEEEccccccccCCcCCCCceEEEEcC----cccHHHHHHHHccCcc
Q 026122 98 PDWKVTLLESMNKRCVFLEHAVSL---TQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEYCLPLVR 170 (243)
Q Consensus 98 ~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~----~~~~~~~l~~~~~~Lk 170 (243)
+.++|+|+|+|++|++.|+++... ....+++++++|+++++..+ ++||+|++.. ..++..+++++.++||
T Consensus 97 ~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~---~sfD~V~~~~~l~~~~d~~~~l~ei~rvLk 173 (261)
T PLN02233 97 SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDD---CYFDAITMGYGLRNVVDRLKAMQEMYRVLK 173 (261)
T ss_pred CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCC---CCEeEEEEecccccCCCHHHHHHHHHHHcC
Confidence 457999999999999999876542 23457999999999987643 6899999853 5578999999999999
Q ss_pred cCeEEEEEe
Q 026122 171 VGGLFVAAK 179 (243)
Q Consensus 171 pgG~l~~~~ 179 (243)
|||++++..
T Consensus 174 pGG~l~i~d 182 (261)
T PLN02233 174 PGSRVSILD 182 (261)
T ss_pred cCcEEEEEE
Confidence 999998765
No 11
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.80 E-value=1.2e-18 Score=129.14 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=85.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccc-cccccCCcCCCCceEEEEc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRA-ETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~-~~~~~~~~~~~~fD~I~~~ 153 (243)
+.+|||||||+|..++.+++.+++++|+|+|+|+++++.+++++...+. .+++++++|+ ..... .++||+|++.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~D~v~~~ 77 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF----LEPFDLVICS 77 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT----SSCEEEEEEC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc----CCCCCEEEEC
Confidence 7899999999999999999877899999999999999999999966665 5799999999 33322 2679999997
Q ss_pred C-----cc---cHHHHHHHHccCcccCeEEEEEe
Q 026122 154 A-----VA---EMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 154 ~-----~~---~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
. .. +...+++.+.+.|+|||++++..
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 7 21 35778999999999999998854
No 12
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.80 E-value=4.4e-18 Score=148.54 Aligned_cols=173 Identities=17% Similarity=0.184 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHhc---------cCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChH
Q 026122 19 FYLGLFLKKRKQNLQ---------KMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLP 89 (243)
Q Consensus 19 ~~l~~~~~~~~~~n~---------~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~ 89 (243)
+.+.+|.+....|=. .+|.++..-..+.+.+++.++...... .++.+|||||||+|.+
T Consensus 79 ~e~~~f~~~a~~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~~~~~-------------~~g~~ILDIGCG~G~~ 145 (322)
T PLN02396 79 DELAKFSAIADTWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPSSAKP-------------FEGLKFIDIGCGGGLL 145 (322)
T ss_pred HHHHHHHHHHHHhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchhhccC-------------CCCCEEEEeeCCCCHH
Confidence 347788888877743 344555555555555665554321111 1277999999999999
Q ss_pred HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcC----cccHHHHHHH
Q 026122 90 GLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEY 164 (243)
Q Consensus 90 ~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~----~~~~~~~l~~ 164 (243)
+..+++ .+++|+|||+++++++.|+++++..+. .+++++++|+++++.. .++||+|++.. +.+...+++.
T Consensus 146 s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~---~~~FD~Vi~~~vLeHv~d~~~~L~~ 220 (322)
T PLN02396 146 SEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE---GRKFDAVLSLEVIEHVANPAEFCKS 220 (322)
T ss_pred HHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc---cCCCCEEEEhhHHHhcCCHHHHHHH
Confidence 988885 368999999999999999988766554 3699999999987643 26899999975 4578999999
Q ss_pred HccCcccCeEEEEEeCCCcH---------------------------HHHHHHHHHHHHhCCeeeEEEEEec
Q 026122 165 CLPLVRVGGLFVAAKGHDPQ---------------------------EEVKNSERAVQLMGASLLQLCSVES 209 (243)
Q Consensus 165 ~~~~LkpgG~l~~~~~~~~~---------------------------~~~~~~~~~l~~~g~~~~~~~~~~~ 209 (243)
+.++|||||.+++....... -...++.+.++++|+.+.++.-+.+
T Consensus 221 l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G~~~ 292 (322)
T PLN02396 221 LSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAGFVY 292 (322)
T ss_pred HHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEeeeEE
Confidence 99999999999976521110 1135667778899999988766554
No 13
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.78 E-value=1.4e-17 Score=135.08 Aligned_cols=126 Identities=19% Similarity=0.255 Sum_probs=102.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 155 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 155 (243)
+.+|||+|||+|.+++.+++..++.+|+++|+|+.+++.++++++++++.+++++++|.... . .++||+|++...
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~-~----~~~~D~v~~~~~ 106 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE-L----PGKADAIFIGGS 106 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh-c----CcCCCEEEECCC
Confidence 78999999999999999998888899999999999999999999998887899999987532 1 267999998763
Q ss_pred -ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122 156 -AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE 208 (243)
Q Consensus 156 -~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 208 (243)
..+..+++.+.+.|+|||.+++.... ..+..++.+.+++.|+...++..+.
T Consensus 107 ~~~~~~~l~~~~~~Lk~gG~lv~~~~~--~~~~~~~~~~l~~~g~~~~~~~~~~ 158 (187)
T PRK08287 107 GGNLTAIIDWSLAHLHPGGRLVLTFIL--LENLHSALAHLEKCGVSELDCVQLQ 158 (187)
T ss_pred ccCHHHHHHHHHHhcCCCeEEEEEEec--HhhHHHHHHHHHHCCCCcceEEEEE
Confidence 46788999999999999998875421 2334556677889998776665544
No 14
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.78 E-value=1.1e-17 Score=149.18 Aligned_cols=177 Identities=17% Similarity=0.178 Sum_probs=123.9
Q ss_pred HHHHHHHHHHhccCCccccCChHHHHHHhHh-hhcccCCCccccc-CccCCCCCCCCCeEEEEcCCCChHHHHHHHHCCC
Q 026122 22 GLFLKKRKQNLQKMNLTAVKDVNEVMERHID-DSLAIIPPIKNSY-TSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPD 99 (243)
Q Consensus 22 ~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~ 99 (243)
..|.+.+.+..+...+..+....++|...+. +.-.+.+..++.. .++.++.++++.+|||+|||+|.+++.++...++
T Consensus 196 ~~~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~ 275 (423)
T PRK14966 196 QRADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPD 275 (423)
T ss_pred HHHHHHHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCC
Confidence 4556666666666666555555555554442 1112223222211 1233344455679999999999999999988888
Q ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc------------------------
Q 026122 100 WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV------------------------ 155 (243)
Q Consensus 100 ~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~------------------------ 155 (243)
++|+|+|+|+.+++.+++|++.++. +++++++|+.+..... .++||+|++|..
T Consensus 276 a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~~--~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~g 352 (423)
T PRK14966 276 AFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMPS--EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTD 352 (423)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhcccccc--CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhC
Confidence 9999999999999999999998886 6999999986643211 257999999630
Q ss_pred -----ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEE
Q 026122 156 -----AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL 204 (243)
Q Consensus 156 -----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 204 (243)
..+..+++.+.+.|+|||.++++.+..+.+.+.++ +++.|+..+++
T Consensus 353 G~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~l---l~~~Gf~~v~v 403 (423)
T PRK14966 353 FSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGV---LAENGFSGVET 403 (423)
T ss_pred CCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHH---HHHCCCcEEEE
Confidence 01467888888999999999998898776666554 45788876554
No 15
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.77 E-value=6.8e-18 Score=132.38 Aligned_cols=105 Identities=20% Similarity=0.377 Sum_probs=90.8
Q ss_pred CCCeEEEEcCCCChHHHHHH-HHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122 75 SNLKLVDVGTGAGLPGLVLA-IACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la-~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
++.+|||+|||+|..+..++ +..++.+++|+|+|+++++.+++.++++++++++++++|+.+++.. ..++||+|+++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~--~~~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE--LEEKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC--SSTTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc--cCCCeeEEEEc
Confidence 37899999999999999999 4567899999999999999999999999998999999999996521 12689999997
Q ss_pred C----cccHHHHHHHHccCcccCeEEEEEeCC
Q 026122 154 A----VAEMRILAEYCLPLVRVGGLFVAAKGH 181 (243)
Q Consensus 154 ~----~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (243)
. ..+...+++.+.+.|++||.+++....
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 5 456789999999999999999887754
No 16
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.76 E-value=3.3e-17 Score=135.10 Aligned_cols=121 Identities=20% Similarity=0.232 Sum_probs=104.0
Q ss_pred cCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHCCC------CEEEEEeCCHHHHH
Q 026122 40 VKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPD------WKVTLLESMNKRCV 113 (243)
Q Consensus 40 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~------~~v~~vD~s~~~~~ 113 (243)
....+++|+.++.+.+.... +.++||++||||.+++.+....+. .+|+.+|+|++|++
T Consensus 81 SlGiHRlWKd~~v~~L~p~~----------------~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~ 144 (296)
T KOG1540|consen 81 SLGIHRLWKDMFVSKLGPGK----------------GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLA 144 (296)
T ss_pred hcchhHHHHHHhhhccCCCC----------------CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHH
Confidence 34678999888888776532 789999999999999888876554 79999999999999
Q ss_pred HHHHHHHHcCCC-C--EEEEEccccccccCCcCCCCceEEEE----cCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 114 FLEHAVSLTQLL-N--VQIVRGRAETLGKDVSFREQYDVAVA----RAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 114 ~a~~~~~~~~~~-~--v~~~~~d~~~~~~~~~~~~~fD~I~~----~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
.+++.+.+.++. + +.++++|+++++.++ ++||..++ +.+.++++.+++++|+|||||+++++.
T Consensus 145 vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd---~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 145 VGKQRAKKRPLKASSRVEWVEGDAEDLPFDD---DSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred HHHHHHhhcCCCcCCceEEEeCCcccCCCCC---CcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999887763 3 899999999999764 78998887 357789999999999999999999876
No 17
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=2.7e-17 Score=141.25 Aligned_cols=171 Identities=17% Similarity=0.185 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHhccCCccccCChHHHHHHhHh-hhcccCCCcccccC-ccCCCCCCCCC-eEEEEcCCCChHHHHHHHHC
Q 026122 21 LGLFLKKRKQNLQKMNLTAVKDVNEVMERHID-DSLAIIPPIKNSYT-SHCDSSCNSNL-KLVDVGTGAGLPGLVLAIAC 97 (243)
Q Consensus 21 l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~-~~~~~~~~~~~-~VLDiGcG~G~~~~~la~~~ 97 (243)
...+.+.+.+..+.+.+..+.....+|...+. +.-.+.|..++..+ ++++....... +|||+|||||.+++.+|...
T Consensus 53 ~~~~~~~~~rr~~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~ 132 (280)
T COG2890 53 LERLRELLERRAEGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEG 132 (280)
T ss_pred HHHHHHHHHHHHCCCCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhC
Confidence 45555555555445444444443344433332 22223333333221 12111122222 79999999999999999999
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-----------------------
Q 026122 98 PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----------------------- 154 (243)
Q Consensus 98 ~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~----------------------- 154 (243)
|.++|+|+|+|+.+++.|++|++.+++.++.++++|+.+-. .++||+|++|.
T Consensus 133 ~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~-----~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al 207 (280)
T COG2890 133 PDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL-----RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLAL 207 (280)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc-----CCceeEEEeCCCCCCCcccccChhhhccCHHHHH
Confidence 99999999999999999999999999866777777776532 26899999972
Q ss_pred ------cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCC
Q 026122 155 ------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGA 199 (243)
Q Consensus 155 ------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~ 199 (243)
..-+..++..+.+.|+|||.+++..+..+.+.+.++. .+.|+
T Consensus 208 ~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~---~~~~~ 255 (280)
T COG2890 208 VGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALF---EDTGF 255 (280)
T ss_pred ccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHH---HhcCC
Confidence 1126788899999999999999999988877775554 48884
No 18
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.75 E-value=1.3e-17 Score=136.96 Aligned_cols=122 Identities=16% Similarity=0.070 Sum_probs=100.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccc-cccc--cCCcCCCCceEEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA-ETLG--KDVSFREQYDVAVA 152 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~~~~fD~I~~ 152 (243)
+.+|||+|||+|..+..++...|+.+|+|||+|+++++.++++++..++.+++++++|+ +.+. .. +++||.|++
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~---~~~~D~V~~ 117 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFP---DGSLDRIYL 117 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcC---ccccceEEE
Confidence 67999999999999999998888889999999999999999999988888899999999 6654 22 267999998
Q ss_pred cCcc------------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeee
Q 026122 153 RAVA------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLL 202 (243)
Q Consensus 153 ~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~ 202 (243)
+... ....+++.+.+.|||||.+++... ......++.+.++..|+...
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~--~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD--WEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC--CHHHHHHHHHHHHhCccccc
Confidence 5311 147899999999999999998653 23445667788888887544
No 19
>PLN02244 tocopherol O-methyltransferase
Probab=99.75 E-value=1e-16 Score=141.59 Aligned_cols=130 Identities=14% Similarity=0.108 Sum_probs=104.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEc
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
++.+|||||||+|..+..++..+ +++|+|||+|+.+++.++++++..++. +++++++|+.+++..+ ++||+|++.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~---~~FD~V~s~ 193 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFED---GQFDLVWSM 193 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCC---CCccEEEEC
Confidence 47899999999999999999876 689999999999999999999888874 5999999999876543 789999996
Q ss_pred C----cccHHHHHHHHccCcccCeEEEEEeCC------Cc----HH------------------HHHHHHHHHHHhCCee
Q 026122 154 A----VAEMRILAEYCLPLVRVGGLFVAAKGH------DP----QE------------------EVKNSERAVQLMGASL 201 (243)
Q Consensus 154 ~----~~~~~~~l~~~~~~LkpgG~l~~~~~~------~~----~~------------------~~~~~~~~l~~~g~~~ 201 (243)
. +.+...+++++.++|||||++++..-. .. .. ...++.+.++++||..
T Consensus 194 ~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~ 273 (340)
T PLN02244 194 ESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQD 273 (340)
T ss_pred CchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCe
Confidence 4 457889999999999999999875411 00 00 1345667788999988
Q ss_pred eEEEEEe
Q 026122 202 LQLCSVE 208 (243)
Q Consensus 202 ~~~~~~~ 208 (243)
++...+.
T Consensus 274 v~~~d~s 280 (340)
T PLN02244 274 IKTEDWS 280 (340)
T ss_pred eEeeeCc
Confidence 7766543
No 20
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.74 E-value=2.1e-16 Score=137.43 Aligned_cols=182 Identities=13% Similarity=0.053 Sum_probs=123.5
Q ss_pred chHHHHHHHHHHHHHHHHHhc-cCCccccCChHHHHHHhHh-hhcc-cCCCcccccCccCCCCCCCCCeEEEEcCCCChH
Q 026122 13 VFMFMFFYLGLFLKKRKQNLQ-KMNLTAVKDVNEVMERHID-DSLA-IIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLP 89 (243)
Q Consensus 13 ~~~~~~~~l~~~~~~~~~~n~-~~n~~~~~~~~~~~~~~~~-~~l~-~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~ 89 (243)
+...-.+.++.....+.-|.+ .+++..+....+ |..++. +.+. ..... ++++|||||||+|..
T Consensus 70 ~~~~~~~~l~~~l~~l~p~~~~~~~l~~~~~~~e-~~s~~~~~~~l~~l~~~-------------~g~~VLDvGCG~G~~ 135 (314)
T TIGR00452 70 LSAGQIKRILEEIMALMPWRKGPFELSGIKIDSE-WRSDIKWDRVLPHLSPL-------------KGRTILDVGCGSGYH 135 (314)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCCcccccccCCHH-HHHHHHHHHHHHhcCCC-------------CCCEEEEeccCCcHH
Confidence 344556677777777777776 777777665322 323322 2111 11111 278999999999999
Q ss_pred HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCEEEEEccccccccCCcCCCCceEEEEcC----cccHHHHHHH
Q 026122 90 GLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-LLNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEY 164 (243)
Q Consensus 90 ~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~----~~~~~~~l~~ 164 (243)
+..++... ..+|+|+|+|+.|+..++...+..+ ..++.+...++++++.. .+||+|+|.+ ..++..++++
T Consensus 136 ~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~----~~FD~V~s~gvL~H~~dp~~~L~e 210 (314)
T TIGR00452 136 MWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL----YAFDTVFSMGVLYHRKSPLEHLKQ 210 (314)
T ss_pred HHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC----CCcCEEEEcchhhccCCHHHHHHH
Confidence 87877653 3589999999999877655444333 23588889999887643 5799999986 3478899999
Q ss_pred HccCcccCeEEEEEe----CCC-----c------------HHHHHHHHHHHHHhCCeeeEEEEEecCCCC
Q 026122 165 CLPLVRVGGLFVAAK----GHD-----P------------QEEVKNSERAVQLMGASLLQLCSVESQSPF 213 (243)
Q Consensus 165 ~~~~LkpgG~l~~~~----~~~-----~------------~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 213 (243)
+++.|+|||.+++.. +.. . .....++.++++++||..+++.........
T Consensus 211 l~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~tt~~ 280 (314)
T TIGR00452 211 LKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDVLKTTPE 280 (314)
T ss_pred HHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEeccCCCHH
Confidence 999999999998753 211 0 012356678889999998887665544333
No 21
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.74 E-value=5.8e-17 Score=139.82 Aligned_cols=176 Identities=17% Similarity=0.195 Sum_probs=121.4
Q ss_pred HHHHHHHHHHhccCCccccCChHHHHHHhHhhhcc-cCCCccccc-CccCCCCC---CCCCeEEEEcCCCChHHHHHHHH
Q 026122 22 GLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLA-IIPPIKNSY-TSHCDSSC---NSNLKLVDVGTGAGLPGLVLAIA 96 (243)
Q Consensus 22 ~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~-~~~~~~~~---~~~~~VLDiGcG~G~~~~~la~~ 96 (243)
..|...+.+..+..++..+.+..++|..+|..+.. +.|..++.. .++.+..+ ++..+|||+|||+|.+++.++..
T Consensus 56 ~~~~~~~~~r~~~~pl~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~ 135 (284)
T TIGR00536 56 ERIFRLVLRRVKGVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYE 135 (284)
T ss_pred HHHHHHHHHHHcCCCHHHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHH
Confidence 34444555555556666666666666555432222 223222111 11111111 12268999999999999999998
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEcC----------c----------
Q 026122 97 CPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA----------V---------- 155 (243)
Q Consensus 97 ~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~~----------~---------- 155 (243)
.++.+|+|+|+|+++++.+++|++.+++.+ ++++++|+.+... ..+||+|++|. .
T Consensus 136 ~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~----~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~ 211 (284)
T TIGR00536 136 FPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA----GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLL 211 (284)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc----CCCccEEEECCCCCCcchhhcCCcccccCcHH
Confidence 888999999999999999999999999864 9999999876321 13799999962 0
Q ss_pred ---------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeE
Q 026122 156 ---------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ 203 (243)
Q Consensus 156 ---------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 203 (243)
..+..+++.+.++|+|||.+++..+.++...+.++... ..|+...+
T Consensus 212 AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~--~~~~~~~~ 266 (284)
T TIGR00536 212 ALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRI--KFTWYDVE 266 (284)
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHh--cCCCceeE
Confidence 13567889999999999999999998877776654431 35775443
No 22
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.73 E-value=1.7e-17 Score=136.41 Aligned_cols=99 Identities=22% Similarity=0.298 Sum_probs=88.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
+.+|||+|||-|.++..+|+. +++|+|+|+++++++.|+..+...++. +++.+..++++.... ++||+|+|..
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~~~---~~FDvV~cmEV 133 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLASAG---GQFDVVTCMEV 133 (243)
T ss_pred CCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHhcC---CCccEEEEhhH
Confidence 889999999999999999976 589999999999999999999998885 888899999986542 6899999975
Q ss_pred ---cccHHHHHHHHccCcccCeEEEEEeC
Q 026122 155 ---VAEMRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
+++++.+++.|.+++||||.+++..-
T Consensus 134 lEHv~dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 134 LEHVPDPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred HHccCCHHHHHHHHHHHcCCCcEEEEecc
Confidence 66899999999999999999888663
No 23
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.73 E-value=5.8e-17 Score=149.76 Aligned_cols=150 Identities=16% Similarity=0.210 Sum_probs=111.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
+.+|||+|||+|.+++.++...|+.+|+|+|+|+.+++.|++|++.+++. +++++++|+.+... .++||+|++|.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~----~~~fDlIvsNP 214 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE----KQKFDFIVSNP 214 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc----CCCccEEEECC
Confidence 46899999999999999998888899999999999999999999999875 59999999865321 25799999962
Q ss_pred ------------------------------cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEE
Q 026122 155 ------------------------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL 204 (243)
Q Consensus 155 ------------------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 204 (243)
...+..+++.+.++|+|||.+++..+..+.+.+.++. .+.|+..+.+
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~---~~~g~~~~~~ 291 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIF---LDHGYNIESV 291 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHH---HhcCCCceEE
Confidence 0124667888999999999999988887777665544 4778876554
Q ss_pred EEEecCCCCCceEEEEEEeeCCCCCCCCCCCCC
Q 026122 205 CSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGT 237 (243)
Q Consensus 205 ~~~~~~~~~~~r~~v~~~k~~~~~~~yp~~~~~ 237 (243)
.. .....+|.+++.+-. ...-|.|+.|.
T Consensus 292 ~~---D~~g~~R~v~~~~~~--~~rs~~rr~g~ 319 (506)
T PRK01544 292 YK---DLQGHSRVILISPIN--LNRSYARRIGK 319 (506)
T ss_pred Ee---cCCCCceEEEecccc--CCcceeccCCC
Confidence 32 122235555544433 23356666553
No 24
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.73 E-value=4e-17 Score=130.54 Aligned_cols=103 Identities=21% Similarity=0.270 Sum_probs=88.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 155 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 155 (243)
+.+|||+|||+|.+++.+++..+..+|+++|+|+.+++.++++++.+++.+++++.+|+.+... .++||+|++|..
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~----~~~fD~Iv~NPP 107 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP----DGKFDLIVSNPP 107 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC----TTCEEEEEE---
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc----ccceeEEEEccc
Confidence 7799999999999999999988888999999999999999999999999889999999877443 278999999841
Q ss_pred ---------ccHHHHHHHHccCcccCeEEEEEeCCC
Q 026122 156 ---------AEMRILAEYCLPLVRVGGLFVAAKGHD 182 (243)
Q Consensus 156 ---------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 182 (243)
.....+++.+.++|+|||.+++.....
T Consensus 108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH 143 (170)
T ss_dssp SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred hhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence 136889999999999999998766543
No 25
>PRK04266 fibrillarin; Provisional
Probab=99.73 E-value=3.7e-16 Score=130.26 Aligned_cols=147 Identities=18% Similarity=0.166 Sum_probs=102.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
++++.+|||+|||+|..+..++...+..+|+|+|++++|++.+.++++.. .|+.++.+|+.+........++||+|++
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D~i~~ 147 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVDVIYQ 147 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCCEEEE
Confidence 34588999999999999999998876679999999999999887776653 5789999998752111111257999998
Q ss_pred cCcc--cHHHHHHHHccCcccCeEEEEE------eCC-CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEe
Q 026122 153 RAVA--EMRILAEYCLPLVRVGGLFVAA------KGH-DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK 223 (243)
Q Consensus 153 ~~~~--~~~~~l~~~~~~LkpgG~l~~~------~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k 223 (243)
.... ....+++.+.+.|||||++++. .-. .......+..+.++.+||+.++.... .....++..++.++
T Consensus 148 d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l--~p~~~~h~~~v~~~ 225 (226)
T PRK04266 148 DVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDL--EPYHKDHAAVVARK 225 (226)
T ss_pred CCCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcC--CCCcCCeEEEEEEc
Confidence 5432 2245689999999999999983 211 11222334567888999988876542 22223445555443
No 26
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.73 E-value=6.5e-17 Score=136.55 Aligned_cols=177 Identities=19% Similarity=0.198 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHhccCCccccCChHHHHHHhHhhhccc-CCCccc-ccCccCCCCC-CCCCeEEEEcCCCChHHHHHHHHC
Q 026122 21 LGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAI-IPPIKN-SYTSHCDSSC-NSNLKLVDVGTGAGLPGLVLAIAC 97 (243)
Q Consensus 21 l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~~-~~~~~~-~~~~~~~~~~-~~~~~VLDiGcG~G~~~~~la~~~ 97 (243)
+..|.+.+.+.....++.......++|..++...... .+...+ .+..+.+..+ ..+.+|||+|||+|..++.++...
T Consensus 30 ~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~ 109 (251)
T TIGR03534 30 LARFEALLARRAKGEPVAYILGEREFYGLDFKVSPGVLIPRPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKER 109 (251)
T ss_pred HHHHHHHHHHHHcCCCHHHHcccceEeceEEEECCCcccCCCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHC
Confidence 3445555555566667766665556665554322111 111111 0011111112 224689999999999999999888
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc----------------------
Q 026122 98 PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV---------------------- 155 (243)
Q Consensus 98 ~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~---------------------- 155 (243)
++.+++|+|+++.+++.++++++.+++.+++++++|+.+... .++||+|+++..
T Consensus 110 ~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~ 185 (251)
T TIGR03534 110 PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP----GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLA 185 (251)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc----CCceeEEEECCCCCchhhhhhcChhhhhcCCHHH
Confidence 889999999999999999999999998889999999976321 268999999520
Q ss_pred --------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEE
Q 026122 156 --------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL 204 (243)
Q Consensus 156 --------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 204 (243)
..+..+++.+.++|+|||.+++..+..+.+++ .+.+++.||..+..
T Consensus 186 ~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~---~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 186 LFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAV---RALFEAAGFADVET 239 (251)
T ss_pred HcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHH---HHHHHhCCCCceEE
Confidence 01347788999999999999998876655544 44556889875554
No 27
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.73 E-value=2.1e-16 Score=134.25 Aligned_cols=100 Identities=20% Similarity=0.282 Sum_probs=85.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
+.+|||+|||+|..+..++.. +.+|+|+|+|+++++.|+++.+..++. +++++++|+.++.... +++||+|++..
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~--~~~fD~V~~~~ 120 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL--ETPVDLILFHA 120 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc--CCCCCEEEehh
Confidence 679999999999999888865 579999999999999999999988874 6999999998875321 36899999976
Q ss_pred ----cccHHHHHHHHccCcccCeEEEEEe
Q 026122 155 ----VAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 155 ----~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+.++..+++.+.++|||||.+++..
T Consensus 121 vl~~~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HHHhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 3477899999999999999998653
No 28
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.71 E-value=2e-16 Score=119.01 Aligned_cols=101 Identities=22% Similarity=0.197 Sum_probs=87.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
+.+|||+|||+|..+..+++..|+.+|+++|+|+.+++.++++++.+++.+++++.+|+.+.... ..++||+|++..
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~D~v~~~~~ 97 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED--SLPEPDRVFIGGS 97 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh--hcCCCCEEEECCc
Confidence 67999999999999999998888889999999999999999999998888899999988753221 126899999875
Q ss_pred cccHHHHHHHHccCcccCeEEEEE
Q 026122 155 VAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 155 ~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
......+++.+.+.|+|||.+++.
T Consensus 98 ~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 98 GGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred chhHHHHHHHHHHHcCCCCEEEEE
Confidence 446789999999999999998874
No 29
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.71 E-value=4.7e-16 Score=136.27 Aligned_cols=129 Identities=16% Similarity=0.111 Sum_probs=99.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
+.+|||||||+|..+..++...+ .+|+|+|+|+.++..++...+..+. .+++++.+|+++++. . ++||+|+|.+
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~---~~FD~V~s~~ 197 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-L---KAFDTVFSMG 197 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-c---CCcCEEEECC
Confidence 78999999999999988887643 4799999999988765554444332 369999999998865 2 7899999975
Q ss_pred ----cccHHHHHHHHccCcccCeEEEEEe----CCC-----c------------HHHHHHHHHHHHHhCCeeeEEEEEec
Q 026122 155 ----VAEMRILAEYCLPLVRVGGLFVAAK----GHD-----P------------QEEVKNSERAVQLMGASLLQLCSVES 209 (243)
Q Consensus 155 ----~~~~~~~l~~~~~~LkpgG~l~~~~----~~~-----~------------~~~~~~~~~~l~~~g~~~~~~~~~~~ 209 (243)
..++..+++++++.|+|||.+++.. +.. . .....++.++++++||..+++.....
T Consensus 198 vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~ 277 (322)
T PRK15068 198 VLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVSV 277 (322)
T ss_pred hhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeCCC
Confidence 3468899999999999999998752 111 0 11345678889999999888776543
No 30
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.71 E-value=2.6e-16 Score=134.84 Aligned_cols=177 Identities=19% Similarity=0.184 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHhccCCccccCChHHHHHHhHhhhcc-cCCCccccc-CccCCC--CCCCCCeEEEEcCCCChHHHHHHHH
Q 026122 21 LGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLA-IIPPIKNSY-TSHCDS--SCNSNLKLVDVGTGAGLPGLVLAIA 96 (243)
Q Consensus 21 l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~-~~~~~~--~~~~~~~VLDiGcG~G~~~~~la~~ 96 (243)
...|.+.+.+..+.+++....+..++|..++..... +.+..++.. .++.+. ...++.+|||+|||+|.+++.++..
T Consensus 50 ~~~~~~~~~~~~~~~p~~~i~g~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~ 129 (275)
T PRK09328 50 LERFRALVARRAAGEPLQYILGEAEFWGLDFKVSPGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKE 129 (275)
T ss_pred HHHHHHHHHHHHcCCCHHHHceeceEcCcEEEECCCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHH
Confidence 355666666667777777666666666665543321 122222111 111111 1234679999999999999999998
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC----------------------
Q 026122 97 CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA---------------------- 154 (243)
Q Consensus 97 ~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~---------------------- 154 (243)
.+..+|+|+|+|+.+++.++++++.....+++++++|+.+... .++||+|+++.
T Consensus 130 ~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~----~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~ 205 (275)
T PRK09328 130 RPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP----GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHL 205 (275)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC----CCceeEEEECCCcCCcchhhhCCchhhhcCCch
Confidence 8889999999999999999999883333569999999865322 26899999962
Q ss_pred --------cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEE
Q 026122 155 --------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL 204 (243)
Q Consensus 155 --------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 204 (243)
...+..+++.+.++|+|||.+++..+..+.+++ .+.+...||..+..
T Consensus 206 al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~---~~~l~~~gf~~v~~ 260 (275)
T PRK09328 206 ALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAV---RALLAAAGFADVET 260 (275)
T ss_pred hhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHH---HHHHHhCCCceeEE
Confidence 012467888889999999999998887665554 44555889864443
No 31
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.71 E-value=6.6e-16 Score=126.45 Aligned_cols=124 Identities=17% Similarity=0.232 Sum_probs=100.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEE
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
++.+|||+|||+|.+++.+++.. ++.+|+++|+++.+++.++++++.+++ .+++++++|..+.... ..++||+|++
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~--~~~~~D~V~~ 117 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT--INEKFDRIFI 117 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh--cCCCCCEEEE
Confidence 37899999999999998888764 567999999999999999999999985 6799999998774321 1267999999
Q ss_pred cC-cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeee
Q 026122 153 RA-VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLL 202 (243)
Q Consensus 153 ~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~ 202 (243)
.. ...+..+++.+.+.|+|||++++... ..+.+.++.+.+++.|+...
T Consensus 118 ~~~~~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~~~~ 166 (198)
T PRK00377 118 GGGSEKLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGFNLE 166 (198)
T ss_pred CCCcccHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCCCeE
Confidence 64 45788999999999999999886333 34556777888889998543
No 32
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.71 E-value=3.9e-16 Score=127.70 Aligned_cols=97 Identities=22% Similarity=0.217 Sum_probs=83.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 155 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 155 (243)
+.+|||+|||+|..++.+|.. +.+|+|+|+|+.+++.++++++..++.++++.+.|+.+... +++||+|+++..
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~I~~~~~ 104 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF----DGEYDFILSTVV 104 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc----CCCcCEEEEecc
Confidence 679999999999999999865 57999999999999999999998888789999999987654 267999998752
Q ss_pred ------ccHHHHHHHHccCcccCeEEEEE
Q 026122 156 ------AEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 156 ------~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
.+...+++.+.++|+|||.+++.
T Consensus 105 ~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 105 LMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 24689999999999999996554
No 33
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.70 E-value=4.8e-16 Score=133.23 Aligned_cols=130 Identities=15% Similarity=0.164 Sum_probs=103.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
++++.+|||+|||+|..++.+++.. +..+|+++|+++.+++.++++.+..+..+++++.+|+++++... ++||+|+
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~---~~fD~Vi 151 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVAD---NSVDVII 151 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCC---CceeEEE
Confidence 4568999999999999887777654 45689999999999999999999888888999999998876532 6899999
Q ss_pred EcC----cccHHHHHHHHccCcccCeEEEEEeC---CCcH-----------------HHHHHHHHHHHHhCCeeeEEE
Q 026122 152 ARA----VAEMRILAEYCLPLVRVGGLFVAAKG---HDPQ-----------------EEVKNSERAVQLMGASLLQLC 205 (243)
Q Consensus 152 ~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~---~~~~-----------------~~~~~~~~~l~~~g~~~~~~~ 205 (243)
++. ..+...+++++.++|||||++++... .... ....++.+.++..||....+.
T Consensus 152 ~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~ 229 (272)
T PRK11873 152 SNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQ 229 (272)
T ss_pred EcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEE
Confidence 976 34678899999999999999988531 1000 122456677888999877654
No 34
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.70 E-value=4e-16 Score=127.48 Aligned_cols=120 Identities=16% Similarity=0.241 Sum_probs=95.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
++.+|||+|||+|.+++.+++..++.+|+++|+|+++++.++++++++++.+++++++|+.+.... ....+|.++...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~--~~~~~d~v~~~~ 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQ--LAPAPDRVCIEG 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhh--CCCCCCEEEEEC
Confidence 378999999999999999987777889999999999999999999999988899999998653211 113468887765
Q ss_pred cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhC
Q 026122 155 VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMG 198 (243)
Q Consensus 155 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g 198 (243)
...+..+++.+.+.|+|||++++.... .+.+.+..+.++..+
T Consensus 118 ~~~~~~~l~~~~~~LkpgG~li~~~~~--~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 118 GRPIKEILQAVWQYLKPGGRLVATASS--LEGLYAISEGLAQLQ 159 (196)
T ss_pred CcCHHHHHHHHHHhcCCCeEEEEEeec--HHHHHHHHHHHHhcC
Confidence 567789999999999999998887643 334444555555543
No 35
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.70 E-value=4.6e-16 Score=129.43 Aligned_cols=127 Identities=13% Similarity=0.069 Sum_probs=102.9
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
++|||||||+|..+..++..+++++|+|+|+|+++++.++++++..++. +++++.+|+.+.+. +++||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~----~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF----PDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC----CCCCCEeehHHH
Confidence 3799999999999999998888889999999999999999999888875 48999999866533 26899999854
Q ss_pred ---cccHHHHHHHHccCcccCeEEEEEeCCC-------------cHHHHHHHHHHHHHhCCeeeEEEEE
Q 026122 155 ---VAEMRILAEYCLPLVRVGGLFVAAKGHD-------------PQEEVKNSERAVQLMGASLLQLCSV 207 (243)
Q Consensus 155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------------~~~~~~~~~~~l~~~g~~~~~~~~~ 207 (243)
+.+...+++.+.++|+|||++++..-.. ......++.+.+++.||.+.+...+
T Consensus 77 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~ 145 (224)
T smart00828 77 IHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDA 145 (224)
T ss_pred HHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEEC
Confidence 4578999999999999999998764210 0112456777888999998877654
No 36
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=4.2e-16 Score=133.31 Aligned_cols=128 Identities=20% Similarity=0.200 Sum_probs=98.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEE
Q 026122 72 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVA 150 (243)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I 150 (243)
...++.+|||+|||||.+++..++. +..+|+|+|+++.+++.+++|++.|++.. ++....+..+... .++||+|
T Consensus 159 ~~~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~----~~~~DvI 233 (300)
T COG2264 159 LLKKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE----NGPFDVI 233 (300)
T ss_pred hhcCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc----cCcccEE
Confidence 4457899999999999999887765 56789999999999999999999999864 3333333333322 2589999
Q ss_pred EEcCccc-HHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122 151 VARAVAE-MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS 206 (243)
Q Consensus 151 ~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 206 (243)
++|-.++ +..+...+.+.+||||++++ +| -.........+++...||.+.....
T Consensus 234 VANILA~vl~~La~~~~~~lkpgg~lIl-SG-Il~~q~~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 234 VANILAEVLVELAPDIKRLLKPGGRLIL-SG-ILEDQAESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred EehhhHHHHHHHHHHHHHHcCCCceEEE-Ee-ehHhHHHHHHHHHHhCCCeEeEEEe
Confidence 9998764 57888899999999999776 33 3333455667777789998877643
No 37
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.69 E-value=2.1e-15 Score=121.43 Aligned_cols=124 Identities=11% Similarity=0.069 Sum_probs=98.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 155 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 155 (243)
+.+|||+|||+|.++..++...+ +|+++|+|+.+++.++++.+.++. +++++++|+.+.. .++||+|+++..
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-----~~~fD~Vi~n~p 91 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV-----RGKFDVILFNPP 91 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc-----CCcccEEEECCC
Confidence 67899999999999988887643 899999999999999999988876 5899999987643 258999999731
Q ss_pred c-------------------------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEec
Q 026122 156 A-------------------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVES 209 (243)
Q Consensus 156 ~-------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 209 (243)
- .+..+++.+.++|+|||.+++...... ...++.+.+++.||....+.+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--~~~~~~~~l~~~gf~~~~~~~~~~ 168 (179)
T TIGR00537 92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--GEPDTFDKLDERGFRYEIVAERGL 168 (179)
T ss_pred CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--ChHHHHHHHHhCCCeEEEEEEeec
Confidence 0 146789999999999999988775433 124446667799998887776443
No 38
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.69 E-value=3.4e-16 Score=127.76 Aligned_cols=125 Identities=11% Similarity=0.056 Sum_probs=98.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 155 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 155 (243)
..+|||||||+|..+..+|..+|+.+|+|+|+++.+++.++++++..++.|++++++|+.++.......+++|.|+++-.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 56999999999999999999999999999999999999999999999988999999999875421111257999998642
Q ss_pred cc------------HHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhC-Ceee
Q 026122 156 AE------------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMG-ASLL 202 (243)
Q Consensus 156 ~~------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g-~~~~ 202 (243)
.. ...+++.+.++|||||.+++.... .....++.+.+...+ |...
T Consensus 97 dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~--~~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 97 DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN--EPLFEDMLKVLSENDLFENT 154 (194)
T ss_pred CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHhCCCeEec
Confidence 11 267999999999999999886643 233444556666666 5443
No 39
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.69 E-value=8.3e-16 Score=134.83 Aligned_cols=127 Identities=20% Similarity=0.225 Sum_probs=101.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
+.+|||||||+|..++.+++..++.+|+++|+|+++++.++++.. ..+++++.+|+++++... ++||+|+++.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~---~sFDvVIs~~~ 187 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPT---DYADRYVSAGS 187 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCC---CceeEEEEcCh
Confidence 679999999999998888887777899999999999999888754 346889999999876542 6899999865
Q ss_pred ---cccHHHHHHHHccCcccCeEEEEEeCCCc----H----------HHHHHHHHHHHHhCCeeeEEEEEe
Q 026122 155 ---VAEMRILAEYCLPLVRVGGLFVAAKGHDP----Q----------EEVKNSERAVQLMGASLLQLCSVE 208 (243)
Q Consensus 155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~----------~~~~~~~~~l~~~g~~~~~~~~~~ 208 (243)
..+...+++++.++|+|||++++...... . ....++.+.++++||..++++.+.
T Consensus 188 L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~ 258 (340)
T PLN02490 188 IEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIG 258 (340)
T ss_pred hhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcC
Confidence 44678899999999999999887542110 0 123566788889999988876643
No 40
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.69 E-value=4.3e-16 Score=133.29 Aligned_cols=127 Identities=16% Similarity=0.161 Sum_probs=92.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
+++|.+|||||||.|.+++.+|+.+ +++|+||.+|+++.+.+++.+++.|+.+ +++..+|..+++ .+||.|+
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~------~~fD~Iv 132 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP------GKFDRIV 132 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---------S-SEEE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC------CCCCEEE
Confidence 4569999999999999999999987 7899999999999999999999999965 999999998764 5899999
Q ss_pred EcC------cccHHHHHHHHccCcccCeEEEEEe--CCC----------------------cHHHHHHHHHHHHHhCCee
Q 026122 152 ARA------VAEMRILAEYCLPLVRVGGLFVAAK--GHD----------------------PQEEVKNSERAVQLMGASL 201 (243)
Q Consensus 152 ~~~------~~~~~~~l~~~~~~LkpgG~l~~~~--~~~----------------------~~~~~~~~~~~l~~~g~~~ 201 (243)
|-. ..++..+++.+.++|||||++++.. ... ..+.+.++...++..||.+
T Consensus 133 Si~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v 212 (273)
T PF02353_consen 133 SIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEV 212 (273)
T ss_dssp EESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EE
T ss_pred EEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEE
Confidence 954 2478999999999999999988542 111 0111234555567888887
Q ss_pred eEEEE
Q 026122 202 LQLCS 206 (243)
Q Consensus 202 ~~~~~ 206 (243)
....+
T Consensus 213 ~~~~~ 217 (273)
T PF02353_consen 213 EDVEN 217 (273)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77654
No 41
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.69 E-value=1.1e-16 Score=114.57 Aligned_cols=91 Identities=20% Similarity=0.230 Sum_probs=75.5
Q ss_pred EEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC----c
Q 026122 80 VDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----V 155 (243)
Q Consensus 80 LDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~----~ 155 (243)
||+|||+|..+..++.. ++.+|+++|+++++++.+++..... ++.+.++|+++++..+ ++||+|++.. .
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~---~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPD---NSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-T---T-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCcccc---ccccccccccceeec
Confidence 89999999999898877 7889999999999999888876543 3669999999997654 8999999975 3
Q ss_pred ccHHHHHHHHccCcccCeEEEE
Q 026122 156 AEMRILAEYCLPLVRVGGLFVA 177 (243)
Q Consensus 156 ~~~~~~l~~~~~~LkpgG~l~~ 177 (243)
.++..+++++.|+|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 5789999999999999999875
No 42
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.69 E-value=6.7e-16 Score=133.11 Aligned_cols=120 Identities=18% Similarity=0.221 Sum_probs=97.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
+.+|||+|||+|.+++.++...++.+|+|+|+|+.+++.|++|++.+++. +++++++|+.+... .++||+|++|.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~----~~~fD~Iv~NP 197 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP----GRKYDLIVSNP 197 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC----CCCccEEEECC
Confidence 56899999999999999999888899999999999999999999999985 59999999865321 15799999972
Q ss_pred -------c----------------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeE
Q 026122 155 -------V----------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ 203 (243)
Q Consensus 155 -------~----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 203 (243)
. ..+..+++.+.+.|+|||++++..+..+ +. +.+.+...|+....
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~---v~~~~~~~~~~~~~ 271 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EA---LEEAYPDVPFTWLE 271 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HH---HHHHHHhCCCceee
Confidence 0 1136788899999999999999888644 33 44555678876643
No 43
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.69 E-value=8.8e-16 Score=131.04 Aligned_cols=127 Identities=14% Similarity=0.136 Sum_probs=98.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
+++.+|||||||+|..+..++... +++|+|+|+|+.+++.++++... ..++++.++|+.+.+..+ ++||+|+++
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~~~~---~~FD~V~s~ 124 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKDFPE---NTFDMIYSR 124 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCCCCC---CCeEEEEEh
Confidence 458899999999999988888664 67999999999999999887653 246999999998765432 689999995
Q ss_pred C----c--ccHHHHHHHHccCcccCeEEEEEeCC-----CcHH--------------HHHHHHHHHHHhCCeeeEEEE
Q 026122 154 A----V--AEMRILAEYCLPLVRVGGLFVAAKGH-----DPQE--------------EVKNSERAVQLMGASLLQLCS 206 (243)
Q Consensus 154 ~----~--~~~~~~l~~~~~~LkpgG~l~~~~~~-----~~~~--------------~~~~~~~~l~~~g~~~~~~~~ 206 (243)
. . .+...+++++.++|||||.+++.... .... ...++.+.++.+||..+..+.
T Consensus 125 ~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 125 DAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKD 202 (263)
T ss_pred hhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEe
Confidence 3 1 26789999999999999999986521 1111 124566778899998877654
No 44
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.68 E-value=6e-15 Score=123.29 Aligned_cols=101 Identities=22% Similarity=0.225 Sum_probs=85.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
+.+|||+|||+|..+..++...+ ..+++++|+++.+++.++++....+.. +++++.+|+.+.+.. .++||+|+++
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~I~~~ 128 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP---DNSFDAVTIA 128 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC---CCCccEEEEe
Confidence 67999999999999999988776 689999999999999999988776553 589999999886543 2689999975
Q ss_pred C----cccHHHHHHHHccCcccCeEEEEEe
Q 026122 154 A----VAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 154 ~----~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
. ..+...+++.+.+.|+|||.+++..
T Consensus 129 ~~l~~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 129 FGLRNVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cccccCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 3 4578999999999999999988754
No 45
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.68 E-value=5.2e-16 Score=133.61 Aligned_cols=123 Identities=20% Similarity=0.278 Sum_probs=90.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
..++.+|||+|||||.+++..++. +..+|+|+|+++.+++.+++|++.|++.+ +.+ ....+.. ..+||+|+
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v--~~~~~~~-----~~~~dlvv 230 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGVEDRIEV--SLSEDLV-----EGKFDLVV 230 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE--SCTSCTC-----CS-EEEEE
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE--EEecccc-----cccCCEEE
Confidence 456889999999999999777755 56799999999999999999999999975 433 2222222 26899999
Q ss_pred EcCcc-cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122 152 ARAVA-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS 206 (243)
Q Consensus 152 ~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 206 (243)
+|-.. .+..+...+.++|+|||.+++ +|- ..++..++.+.+++ ||.+.+...
T Consensus 231 ANI~~~vL~~l~~~~~~~l~~~G~lIl-SGI-l~~~~~~v~~a~~~-g~~~~~~~~ 283 (295)
T PF06325_consen 231 ANILADVLLELAPDIASLLKPGGYLIL-SGI-LEEQEDEVIEAYKQ-GFELVEERE 283 (295)
T ss_dssp EES-HHHHHHHHHHCHHHEEEEEEEEE-EEE-EGGGHHHHHHHHHT-TEEEEEEEE
T ss_pred ECCCHHHHHHHHHHHHHhhCCCCEEEE-ccc-cHHHHHHHHHHHHC-CCEEEEEEE
Confidence 99765 467788888999999999777 432 23344566677766 998776543
No 46
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=6.7e-16 Score=131.01 Aligned_cols=100 Identities=17% Similarity=0.221 Sum_probs=90.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
+++|.+|||||||.|.+++.+|+.+ +.+|+|+++|+++.+.+++.++..|+. +++++-.|..++. ++||-|+
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~------e~fDrIv 142 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE------EPFDRIV 142 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc------cccceee
Confidence 4569999999999999999999988 799999999999999999999999997 7999999999975 5699999
Q ss_pred EcC------cccHHHHHHHHccCcccCeEEEEEe
Q 026122 152 ARA------VAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 152 ~~~------~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
|-+ ..++..+++.+.+.|+|||.+++..
T Consensus 143 SvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 143 SVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred ehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 964 3469999999999999999988654
No 47
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.67 E-value=3.6e-15 Score=137.34 Aligned_cols=128 Identities=16% Similarity=0.160 Sum_probs=99.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
+++.+|||||||+|..++.++... +++|+|+|+|+.+++.|+++....+ .++++.++|+.+.+... ++||+|++.
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~---~~fD~I~s~ 339 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPD---NSFDVIYSR 339 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCC---CCEEEEEEC
Confidence 347899999999999998888765 6799999999999999988775333 25899999998865432 689999997
Q ss_pred C----cccHHHHHHHHccCcccCeEEEEEeCC----CcH--------------HHHHHHHHHHHHhCCeeeEEEE
Q 026122 154 A----VAEMRILAEYCLPLVRVGGLFVAAKGH----DPQ--------------EEVKNSERAVQLMGASLLQLCS 206 (243)
Q Consensus 154 ~----~~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~--------------~~~~~~~~~l~~~g~~~~~~~~ 206 (243)
. ..+...+++++.++|||||.+++.... ... ....++.+.++++||..+..+.
T Consensus 340 ~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d 414 (475)
T PLN02336 340 DTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAED 414 (475)
T ss_pred CcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeec
Confidence 5 447899999999999999999876421 111 1234566778899998776543
No 48
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.66 E-value=1.1e-15 Score=123.57 Aligned_cols=96 Identities=20% Similarity=0.187 Sum_probs=80.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
++++||+|||.|+.++.||.. +..|+++|.|+.+++.+++.+++.+++ ++..+.|+.+.... +.||+|++..
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~~~----~~yD~I~st~v 103 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFDFP----EEYDFIVSTVV 103 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS-T----TTEEEEEEESS
T ss_pred CCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhcccc----CCcCEEEEEEE
Confidence 679999999999999999976 789999999999999999999988886 99999999887653 6899999853
Q ss_pred -----cccHHHHHHHHccCcccCeEEEEE
Q 026122 155 -----VAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 155 -----~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
......+++.+.+.++|||++++.
T Consensus 104 ~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 104 FMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp GGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred eccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 235688999999999999998874
No 49
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.66 E-value=1e-15 Score=130.08 Aligned_cols=93 Identities=22% Similarity=0.206 Sum_probs=80.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
+.+|||||||+|.++..++...|+++|+|+|+|+.|++.+++. +++++++|++++.. .++||+|+++.
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~----~~~fD~v~~~~~ 98 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKP----KPDTDVVVSNAA 98 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCC----CCCceEEEEehh
Confidence 7899999999999999999888889999999999999988652 47899999987642 26899999976
Q ss_pred ---cccHHHHHHHHccCcccCeEEEEEe
Q 026122 155 ---VAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 155 ---~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+.+...+++++.+.|||||.+++..
T Consensus 99 l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 99 LQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred hhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 4578999999999999999998753
No 50
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.66 E-value=2.2e-15 Score=127.51 Aligned_cols=99 Identities=14% Similarity=0.196 Sum_probs=84.7
Q ss_pred CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
+.+|||||||+|..+..+++. .|+++|+|+|+|+.|++.++++.+..+.. +++++++|+.+++. ..+|+|++
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~D~vv~ 131 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----ENASMVVL 131 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----CCCCEEeh
Confidence 789999999999998888873 57899999999999999999999888765 59999999988754 45899998
Q ss_pred cCc------ccHHHHHHHHccCcccCeEEEEEe
Q 026122 153 RAV------AEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 153 ~~~------~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+.. .....+++++.+.|||||.+++..
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 631 235789999999999999998865
No 51
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.66 E-value=2.7e-15 Score=130.65 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=95.9
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
.+|||+|||+|.+++.++...|+.+|+++|+|+.+++.|++|++.+++. +++++++|+.+... .++||+|++|.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~----~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP----GRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC----CCCccEEEECCC
Confidence 6899999999999999999888899999999999999999999999985 59999999865322 15799999972
Q ss_pred ------c----------------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeE
Q 026122 155 ------V----------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ 203 (243)
Q Consensus 155 ------~----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 203 (243)
. ..+..+++.+.+.|+|||.+++..+..+ .+ +.+.+...++....
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~-~~---~~~~~~~~~~~~~~ 283 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSR-VH---LEEAYPDVPFTWLE 283 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HH---HHHHHhhCCCEEEE
Confidence 0 1146788999999999999999888653 23 34445567765543
No 52
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.65 E-value=5.1e-15 Score=125.49 Aligned_cols=120 Identities=22% Similarity=0.219 Sum_probs=91.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
..++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.++++.+.+++. ++.+..++ .+||+|+
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----------~~fD~Vv 184 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----------LKADVIV 184 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----------CCcCEEE
Confidence 346889999999999998876654 3457999999999999999999988873 24332221 2699999
Q ss_pred EcCcc-cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122 152 ARAVA-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS 206 (243)
Q Consensus 152 ~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 206 (243)
++... .+..+++.+.+.|||||.+++..-. ..+..++.+.+++.||.+.....
T Consensus 185 ani~~~~~~~l~~~~~~~LkpgG~lilsgi~--~~~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 185 ANILANPLLELAPDLARLLKPGGRLILSGIL--EEQADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred EcCcHHHHHHHHHHHHHhcCCCcEEEEEECc--HhhHHHHHHHHHHCCCEEEEEEE
Confidence 98654 4678889999999999998885321 23455667778899998876543
No 53
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.65 E-value=4.6e-16 Score=129.04 Aligned_cols=96 Identities=20% Similarity=0.287 Sum_probs=80.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------CEEEEEccccccccCCcCCCCceE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL------NVQIVRGRAETLGKDVSFREQYDV 149 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------~v~~~~~d~~~~~~~~~~~~~fD~ 149 (243)
|.+|||+|||+|.++..||+. +++|+|||+++++++.|++........ .+++.+.+.++.. ++||+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~------~~fDa 161 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT------GKFDA 161 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc------cccce
Confidence 678999999999999999977 589999999999999999995444331 2556667777653 56999
Q ss_pred EEEcC----cccHHHHHHHHccCcccCeEEEEEe
Q 026122 150 AVARA----VAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 150 I~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
|+|.. +.++.++++.+.++|||||.+++..
T Consensus 162 VvcsevleHV~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 162 VVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred eeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeee
Confidence 99975 5689999999999999999999864
No 54
>PRK14967 putative methyltransferase; Provisional
Probab=99.65 E-value=5.4e-15 Score=123.20 Aligned_cols=128 Identities=17% Similarity=0.176 Sum_probs=98.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
++.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.++++++.++. +++++++|+.+... .++||+|+++.
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~----~~~fD~Vi~np 109 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVE----FRPFDVVVSNP 109 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhcc----CCCeeEEEECC
Confidence 3789999999999999888865 345999999999999999999998887 48899999876422 26899999973
Q ss_pred c--c-----------------------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEec
Q 026122 155 V--A-----------------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVES 209 (243)
Q Consensus 155 ~--~-----------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 209 (243)
. . .+..+++.+.++|||||++++...... ...++.+.++..|+..........
T Consensus 110 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--~~~~~~~~l~~~g~~~~~~~~~~~ 187 (223)
T PRK14967 110 PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--GVERTLTRLSEAGLDAEVVASQWI 187 (223)
T ss_pred CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--CHHHHHHHHHHCCCCeEEEEeecc
Confidence 1 0 146788899999999999998765432 234556667788887666554443
Q ss_pred C
Q 026122 210 Q 210 (243)
Q Consensus 210 ~ 210 (243)
+
T Consensus 188 ~ 188 (223)
T PRK14967 188 P 188 (223)
T ss_pred C
Confidence 3
No 55
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.64 E-value=6.3e-16 Score=133.57 Aligned_cols=96 Identities=20% Similarity=0.261 Sum_probs=82.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 155 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 155 (243)
+++|||+|||+|..++.++.. +.+|+|+|+|+.+++.++++++..++ ++++...|+.+... +++||+|+++.+
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~----~~~fD~I~~~~v 193 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI----QEEYDFILSTVV 193 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc----cCCccEEEEcch
Confidence 569999999999999998864 58999999999999999999998888 68999989877543 278999999753
Q ss_pred ------ccHHHHHHHHccCcccCeEEEEE
Q 026122 156 ------AEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 156 ------~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
.....+++.+.++|+|||++++.
T Consensus 194 l~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 194 LMFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 25788999999999999996654
No 56
>PLN03075 nicotianamine synthase; Provisional
Probab=99.64 E-value=8.4e-15 Score=125.60 Aligned_cols=146 Identities=16% Similarity=0.108 Sum_probs=104.7
Q ss_pred CCCeEEEEcCCCChH-HHHH-HHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCC-EEEEEccccccccCCcCCCCceEE
Q 026122 75 SNLKLVDVGTGAGLP-GLVL-AIACPDWKVTLLESMNKRCVFLEHAVSL-TQLLN-VQIVRGRAETLGKDVSFREQYDVA 150 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~-~~~l-a~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I 150 (243)
++.+|+|||||.|-+ ++.+ +...|+.+++++|+|+++++.|++.+++ .++.+ ++|..+|+.+.... .++||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~---l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES---LKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc---cCCcCEE
Confidence 478999999998844 3333 3457899999999999999999999965 77754 99999999886422 2679999
Q ss_pred EEcCc-----ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEeeC
Q 026122 151 VARAV-----AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSR 225 (243)
Q Consensus 151 ~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~~ 225 (243)
++++. .+..++++.+.+.|+|||.+++-.+.....-+-..-+-....||+...+ ..|..+--..+|+++|..
T Consensus 200 F~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~---~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 200 FLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSV---FHPTDEVINSVIIARKPG 276 (296)
T ss_pred EEecccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEE---ECCCCCceeeEEEEEeec
Confidence 99863 5789999999999999999988664221111100000011227765543 336666678888888865
Q ss_pred C
Q 026122 226 R 226 (243)
Q Consensus 226 ~ 226 (243)
.
T Consensus 277 ~ 277 (296)
T PLN03075 277 G 277 (296)
T ss_pred C
Confidence 3
No 57
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.64 E-value=2.1e-14 Score=118.79 Aligned_cols=99 Identities=22% Similarity=0.306 Sum_probs=83.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
+.+|||+|||+|..+..++...+. .+++++|+++.+++.++++.. ...+++++.+|+.+.+.. .++||+|+++.
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~---~~~~D~i~~~~ 114 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFE---DNSFDAVTIAF 114 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCC---CCcEEEEEEee
Confidence 789999999999999888888765 799999999999999888765 234589999999887643 26899999853
Q ss_pred ----cccHHHHHHHHccCcccCeEEEEEe
Q 026122 155 ----VAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 155 ----~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
..++..+++.+.+.|+|||++++..
T Consensus 115 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 115 GLRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred eeCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 4578899999999999999998754
No 58
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.64 E-value=2.4e-15 Score=122.90 Aligned_cols=96 Identities=18% Similarity=0.210 Sum_probs=80.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 155 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 155 (243)
+.+|||+|||+|..++.+++. +.+|+|+|+|+.+++.+++.++..+++ +++...|+..... +++||+|+++..
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~----~~~fD~I~~~~~ 103 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAAL----NEDYDFIFSTVV 103 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhccc----cCCCCEEEEecc
Confidence 679999999999999999864 579999999999999999998887775 7788888765443 267999998642
Q ss_pred ------ccHHHHHHHHccCcccCeEEEEE
Q 026122 156 ------AEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 156 ------~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
.+...+++.+.++|+|||++++.
T Consensus 104 ~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 104 FMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 24678999999999999996654
No 59
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.64 E-value=5.6e-15 Score=124.32 Aligned_cols=99 Identities=11% Similarity=0.136 Sum_probs=84.0
Q ss_pred CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
+.+|||+|||+|..+..+++. .|+++|+|+|+|+.|++.|+++++..+. .+++++++|+.+++. ..+|+|++
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~d~v~~ 128 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----KNASMVIL 128 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----CCCCEEee
Confidence 779999999999998888876 3689999999999999999999887664 369999999998764 45899888
Q ss_pred cCc------ccHHHHHHHHccCcccCeEEEEEe
Q 026122 153 RAV------AEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 153 ~~~------~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+.. .+...+++++.+.|+|||.+++..
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 642 245789999999999999999875
No 60
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.63 E-value=2.9e-15 Score=124.16 Aligned_cols=103 Identities=23% Similarity=0.301 Sum_probs=84.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
+++.+|||||||+|..+..++...+ ..+|+++|+++++++.|+++++++++.+++++++|..+.... ..+||+|++
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~---~~~fD~Ii~ 152 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP---LAPYDRIYV 152 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc---cCCCCEEEE
Confidence 4588999999999999999998754 468999999999999999999999998899999999775432 258999998
Q ss_pred cCcccHHHHHHHHccCcccCeEEEEEeCC
Q 026122 153 RAVAEMRILAEYCLPLVRVGGLFVAAKGH 181 (243)
Q Consensus 153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (243)
.... ..+.+.+.+.|+|||++++..+.
T Consensus 153 ~~~~--~~~~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 153 TAAG--PKIPEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred cCCc--ccccHHHHHhcCcCcEEEEEEcC
Confidence 7522 33446677899999999986553
No 61
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.63 E-value=4.1e-15 Score=123.04 Aligned_cols=104 Identities=19% Similarity=0.281 Sum_probs=84.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
++++.+|||||||+|..+..+++.. ++++|+++|+++++++.++++++..+..+++++++|..+.... ..+||+|+
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~---~~~fD~I~ 150 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE---NAPYDRIY 150 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc---CCCcCEEE
Confidence 4568999999999999998888764 3479999999999999999999999988899999998765432 26899999
Q ss_pred EcCcccHHHHHHHHccCcccCeEEEEEeCC
Q 026122 152 ARAVAEMRILAEYCLPLVRVGGLFVAAKGH 181 (243)
Q Consensus 152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (243)
+.+.. ..+.+.+.+.|||||++++..+.
T Consensus 151 ~~~~~--~~~~~~l~~~LkpgG~lvi~~~~ 178 (212)
T PRK13942 151 VTAAG--PDIPKPLIEQLKDGGIMVIPVGS 178 (212)
T ss_pred ECCCc--ccchHHHHHhhCCCcEEEEEEcC
Confidence 87532 23345667789999999987653
No 62
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.63 E-value=5.5e-15 Score=125.61 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=82.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
++.+|||||||+|..+..++...++.+|+|+|+|+.+++.++++. .+++++.+|+.++.. .++||+|+++.
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~----~~~fD~v~~~~ 101 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQP----PQALDLIFANA 101 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCC----CCCccEEEEcc
Confidence 378999999999999999998888899999999999999988763 468899999987643 26899999975
Q ss_pred ----cccHHHHHHHHccCcccCeEEEEEe
Q 026122 155 ----VAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 155 ----~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+.+...+++.+.+.|||||.+++..
T Consensus 102 ~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 102 SLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 3477899999999999999988864
No 63
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.63 E-value=8.1e-15 Score=124.23 Aligned_cols=123 Identities=16% Similarity=0.124 Sum_probs=96.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 155 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 155 (243)
+.+|||+|||+|.+++.++...++.+|+|+|+|+.+++.+++|++.++ ++++++|+.+.... ...++||+|++|..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~-~~~~~fDlVv~NPP 162 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPT-ALRGRVDILAANAP 162 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcch-hcCCCEeEEEECCC
Confidence 458999999999999999988888899999999999999999998776 47889998764321 11257999999730
Q ss_pred --c----------------------------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEE
Q 026122 156 --A----------------------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC 205 (243)
Q Consensus 156 --~----------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 205 (243)
. -+..+++.+.++|+|||++++..+..+..+ +...+++.|+......
T Consensus 163 y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~---v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 163 YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPL---AVEAFARAGLIARVAS 239 (251)
T ss_pred CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHH---HHHHHHHCCCCceeeE
Confidence 0 145788888999999999999988765544 4556678898765543
No 64
>PRK14968 putative methyltransferase; Provisional
Probab=99.63 E-value=2.6e-14 Score=115.34 Aligned_cols=123 Identities=15% Similarity=0.175 Sum_probs=97.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--EEEEEccccccccCCcCCCCceEEEEc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN--VQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
+.+|||+|||+|..+..++.. +.+|+++|+|+++++.++++++.+++.+ +.++++|+.+... ..+||+|+++
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~d~vi~n 97 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR----GDKFDVILFN 97 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc----ccCceEEEEC
Confidence 779999999999999888876 5899999999999999999999888765 8899998866322 2479999986
Q ss_pred Cc-------------------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122 154 AV-------------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS 206 (243)
Q Consensus 154 ~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 206 (243)
.. ..+..+++.+.++|+|||.+++..+... ....+.+.+++.||.+..+..
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~--~~~~l~~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT--GEDEVLEYLEKLGFEAEVVAE 173 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC--CHHHHHHHHHHCCCeeeeeee
Confidence 31 1146689999999999999888765432 224456777799998776654
No 65
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.62 E-value=1e-14 Score=126.01 Aligned_cols=123 Identities=18% Similarity=0.148 Sum_probs=93.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
..++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.++++++.+++.+ +.+..++..... .++||+|+
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~-----~~~fDlVv 230 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPI-----EGKADVIV 230 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccccc-----CCCceEEE
Confidence 346789999999999999887754 45699999999999999999999988864 667766643321 26899999
Q ss_pred EcCcc-cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEE
Q 026122 152 ARAVA-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL 204 (243)
Q Consensus 152 ~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 204 (243)
++... .+..++..+.+.|||||.+++..- ...+..++.+.++.. |.+.+.
T Consensus 231 an~~~~~l~~ll~~~~~~LkpgG~li~sgi--~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 231 ANILAEVIKELYPQFSRLVKPGGWLILSGI--LETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred EecCHHHHHHHHHHHHHHcCCCcEEEEEeC--cHhHHHHHHHHHHcc-CceeeE
Confidence 98754 456888999999999999877432 233445566666665 766554
No 66
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.62 E-value=9.5e-15 Score=120.25 Aligned_cols=103 Identities=19% Similarity=0.307 Sum_probs=83.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEE
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
+++.+|||+|||+|..+..++...+ .++|+++|+++++++.++++++.+++. +++++++|..+.... ..+||+|+
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~---~~~fD~Ii 147 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK---HAPFDAII 147 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc---CCCccEEE
Confidence 4478999999999999988887653 579999999999999999999998875 499999999875432 26899999
Q ss_pred EcCcccHHHHHHHHccCcccCeEEEEEeCC
Q 026122 152 ARAVAEMRILAEYCLPLVRVGGLFVAAKGH 181 (243)
Q Consensus 152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (243)
+.... ..+.+.+.+.|+|||++++..+.
T Consensus 148 ~~~~~--~~~~~~l~~~L~~gG~lvi~~~~ 175 (205)
T PRK13944 148 VTAAA--STIPSALVRQLKDGGVLVIPVEE 175 (205)
T ss_pred EccCc--chhhHHHHHhcCcCcEEEEEEcC
Confidence 97543 23446778899999999886543
No 67
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.62 E-value=5.9e-15 Score=131.23 Aligned_cols=102 Identities=14% Similarity=0.142 Sum_probs=85.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---CEEEEEccccccccCCcCCCCceEEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL---NVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
+.+|||+|||+|.+++.+++.+|+.+|+++|.|+.+++.+++|++.++.. +++++.+|..+... .++||+|+|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~----~~~fDlIls 304 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE----PFRFNAVLC 304 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC----CCCEEEEEE
Confidence 46899999999999999999999999999999999999999999888643 58899888765321 257999999
Q ss_pred cCc---------ccHHHHHHHHccCcccCeEEEEEeCC
Q 026122 153 RAV---------AEMRILAEYCLPLVRVGGLFVAAKGH 181 (243)
Q Consensus 153 ~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (243)
|.. .....+++.+.++|+|||.++++...
T Consensus 305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec
Confidence 731 12467899999999999999998643
No 68
>PRK05785 hypothetical protein; Provisional
Probab=99.61 E-value=2.8e-14 Score=119.20 Aligned_cols=105 Identities=15% Similarity=0.128 Sum_probs=81.9
Q ss_pred hHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc
Q 026122 43 VNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT 122 (243)
Q Consensus 43 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 122 (243)
.+..|++.++..+... ..++.+|||+|||||.++..++... +.+|+|+|+|++|++.+++.
T Consensus 33 ~~~~wr~~~~~~l~~~--------------~~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~---- 93 (226)
T PRK05785 33 QDVRWRAELVKTILKY--------------CGRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA---- 93 (226)
T ss_pred CcHHHHHHHHHHHHHh--------------cCCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc----
Confidence 3467777776644321 0126799999999999998888775 57999999999999988753
Q ss_pred CCCCEEEEEccccccccCCcCCCCceEEEEcC----cccHHHHHHHHccCcccCe
Q 026122 123 QLLNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEYCLPLVRVGG 173 (243)
Q Consensus 123 ~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~----~~~~~~~l~~~~~~LkpgG 173 (243)
..++++|+++++..+ ++||+|++.. ..+++.+++++.++|||.+
T Consensus 94 ----~~~~~~d~~~lp~~d---~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 94 ----DDKVVGSFEALPFRD---KSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ----cceEEechhhCCCCC---CCEEEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence 135788998887653 7899999864 5688999999999999953
No 69
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.61 E-value=2.2e-15 Score=110.06 Aligned_cols=91 Identities=23% Similarity=0.295 Sum_probs=74.5
Q ss_pred EEEEcCCCChHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc-C
Q 026122 79 LVDVGTGAGLPGLVLAIAC---PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR-A 154 (243)
Q Consensus 79 VLDiGcG~G~~~~~la~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~-~ 154 (243)
|||+|||+|..+..++... +..+++|+|+|++|++.+++.....+. +++++++|+.+++.. .++||+|++. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~---~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFS---DGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHH---SSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCccc---CCCeeEEEEcCC
Confidence 7999999999999999875 347999999999999999999888666 699999999998654 2689999994 3
Q ss_pred ------cccHHHHHHHHccCcccCe
Q 026122 155 ------VAEMRILAEYCLPLVRVGG 173 (243)
Q Consensus 155 ------~~~~~~~l~~~~~~LkpgG 173 (243)
......+++.+.++|+|||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 1257999999999999998
No 70
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=8.9e-15 Score=124.58 Aligned_cols=100 Identities=19% Similarity=0.257 Sum_probs=86.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
+.+|||+|||.|.+++.+++..|..+++.+|+|..+++.+++|+..+++++.++..+|..+-. .++||.|+||.
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v-----~~kfd~IisNPP 233 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV-----EGKFDLIISNPP 233 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-----cccccEEEeCCC
Confidence 459999999999999999999999999999999999999999999999987667777776632 25899999984
Q ss_pred ----ccc----HHHHHHHHccCcccCeEEEEEeC
Q 026122 155 ----VAE----MRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 155 ----~~~----~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
... -.++++.+.+.|++||.|.++..
T Consensus 234 fh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 234 FHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 111 35899999999999999998875
No 71
>PRK08317 hypothetical protein; Provisional
Probab=99.61 E-value=5.9e-14 Score=117.04 Aligned_cols=130 Identities=17% Similarity=0.155 Sum_probs=99.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
++.+|||+|||+|..+..++... +.++++|+|+|+.+++.++++... ...++++..+|+.+.+... ++||+|+++
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~~---~~~D~v~~~ 94 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPFPD---GSFDAVRSD 94 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCCCC---CCceEEEEe
Confidence 37899999999999999998876 678999999999999999887332 2346899999998765432 689999986
Q ss_pred C----cccHHHHHHHHccCcccCeEEEEEeCCC--------cHHH-----------------HHHHHHHHHHhCCeeeEE
Q 026122 154 A----VAEMRILAEYCLPLVRVGGLFVAAKGHD--------PQEE-----------------VKNSERAVQLMGASLLQL 204 (243)
Q Consensus 154 ~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------~~~~-----------------~~~~~~~l~~~g~~~~~~ 204 (243)
. ..+...+++.+.++|+|||.+++..... .... ...+.+.++.+||.....
T Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 174 (241)
T PRK08317 95 RVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLTDIEV 174 (241)
T ss_pred chhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCCceeE
Confidence 4 4578999999999999999998765210 0001 123556778899987766
Q ss_pred EEEe
Q 026122 205 CSVE 208 (243)
Q Consensus 205 ~~~~ 208 (243)
....
T Consensus 175 ~~~~ 178 (241)
T PRK08317 175 EPYT 178 (241)
T ss_pred EEEE
Confidence 5544
No 72
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.60 E-value=5.2e-15 Score=110.51 Aligned_cols=103 Identities=18% Similarity=0.191 Sum_probs=85.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
|.+|||+|||+|..++.+++.. ..+++|+|+++.+++.++.+....++. +++++++|+.+.... ...++||+|+++.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEP-LPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHT-CTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhh-ccCceeEEEEECC
Confidence 4589999999999998888886 689999999999999999999999884 699999999887621 1137899999973
Q ss_pred ------------cccHHHHHHHHccCcccCeEEEEEeC
Q 026122 155 ------------VAEMRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 155 ------------~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
......+++.+.++|+|||.++++.+
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 11357899999999999999988753
No 73
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.60 E-value=1.7e-14 Score=126.89 Aligned_cols=137 Identities=15% Similarity=0.005 Sum_probs=104.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122 72 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
.++++.+|||+|||+|.+++.++.. +.+|+|+|+++.|++.++.|++..++.++++.++|+.+++.. .++||+|+
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~---~~~~D~Iv 253 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS---SESVDAIA 253 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc---cCCCCEEE
Confidence 3456889999999999998776643 679999999999999999999999988889999999987654 26899999
Q ss_pred EcCc-------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEE
Q 026122 152 ARAV-------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTA 218 (243)
Q Consensus 152 ~~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~ 218 (243)
++.. .-+..+++.+.+.|+|||++++...... + +.+.++.+|| +....... ....-.|.+
T Consensus 254 ~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~--~---~~~~~~~~g~-i~~~~~~~-~h~sl~r~i 326 (329)
T TIGR01177 254 TDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI--D---LESLAEDAFR-VVKRFEVR-VHRSLTRHI 326 (329)
T ss_pred ECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC--C---HHHHHhhcCc-chheeeee-eecceEEEE
Confidence 9631 1158899999999999999998876432 2 2344668999 76655432 222445555
Q ss_pred EE
Q 026122 219 VV 220 (243)
Q Consensus 219 v~ 220 (243)
.+
T Consensus 327 ~v 328 (329)
T TIGR01177 327 YV 328 (329)
T ss_pred Ee
Confidence 43
No 74
>PLN02672 methionine S-methyltransferase
Probab=99.60 E-value=9.9e-15 Score=143.19 Aligned_cols=161 Identities=16% Similarity=0.133 Sum_probs=118.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC----------------CCEEEEEcccccccc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL----------------LNVQIVRGRAETLGK 139 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----------------~~v~~~~~d~~~~~~ 139 (243)
+.+|||+|||+|.+++.++...+..+|+|+|+|+.+++.|++|++.+++ .+++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999999988888999999999999999999998653 259999999987542
Q ss_pred CCcCCCCceEEEEcC--------------cc----------------------------cHHHHHHHHccCcccCeEEEE
Q 026122 140 DVSFREQYDVAVARA--------------VA----------------------------EMRILAEYCLPLVRVGGLFVA 177 (243)
Q Consensus 140 ~~~~~~~fD~I~~~~--------------~~----------------------------~~~~~l~~~~~~LkpgG~l~~ 177 (243)
. ...+||+|++|- +. -+..+++.+.++|+|||.+++
T Consensus 199 ~--~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 199 D--NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred c--cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 1 013699999972 10 036678888899999999999
Q ss_pred EeCCCcHHHHH-HHHHHHHHhCCeeeEEEEEec-CCCCC-ceEEEEEEeeCCCCCCCCCCCCCCCCCCC
Q 026122 178 AKGHDPQEEVK-NSERAVQLMGASLLQLCSVES-QSPFG-QRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243 (243)
Q Consensus 178 ~~~~~~~~~~~-~~~~~l~~~g~~~~~~~~~~~-~~~~~-~r~~v~~~k~~~~~~~yp~~~~~~~~~p~ 243 (243)
..|.++.+.+. ++. +..||....+..... ...+. -+-+|-+.|. +++.+-.=+|..+.-|+
T Consensus 277 EiG~~q~~~v~~~l~---~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 340 (1082)
T PLN02672 277 NMGGRPGQAVCERLF---ERRGFRITKLWQTKINQAADTDISALVEIEKN--SRHRFEFFMGLVGDQPI 340 (1082)
T ss_pred EECccHHHHHHHHHH---HHCCCCeeEEeeehhhhccccchHHHHHHhhc--CccceeeeeccCCCCch
Confidence 99988888775 344 478988776655331 12222 3445555554 45666666666666664
No 75
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.59 E-value=4.2e-14 Score=119.73 Aligned_cols=94 Identities=17% Similarity=0.177 Sum_probs=78.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
+.+|||+|||+|..+..++.. +.+|+++|+|+.+++.++++.. ...++++|+++++... ++||+|+++.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~~~---~~fD~V~s~~~ 112 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPLAT---ATFDLAWSNLA 112 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcCCC---CcEEEEEECch
Confidence 679999999999998777753 5799999999999998877632 2468899998876542 6899999975
Q ss_pred ---cccHHHHHHHHccCcccCeEEEEEe
Q 026122 155 ---VAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 155 ---~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
..++..++.++.++|+|||.+++..
T Consensus 113 l~~~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 113 VQWCGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred hhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 3478899999999999999999875
No 76
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.59 E-value=6.6e-16 Score=112.24 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=63.9
Q ss_pred EEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC----c
Q 026122 80 VDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----V 155 (243)
Q Consensus 80 LDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~----~ 155 (243)
||||||+|..+..+...++..+++|+|+|+.|++.+++.....+..+......+..+..... ..++||+|++.. .
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYD-PPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CC-C----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcc-cccccceehhhhhHhhh
Confidence 79999999999999988888999999999999998988888877655555554444432221 115899999965 3
Q ss_pred ccHHHHHHHHccCcccCeEE
Q 026122 156 AEMRILAEYCLPLVRVGGLF 175 (243)
Q Consensus 156 ~~~~~~l~~~~~~LkpgG~l 175 (243)
.++..+++.+.+.|+|||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 57899999999999999985
No 77
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.58 E-value=1.2e-13 Score=115.17 Aligned_cols=105 Identities=15% Similarity=0.216 Sum_probs=85.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEcccccc--ccCCcCCCCceEEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETL--GKDVSFREQYDVAVA 152 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~--~~~~~~~~~fD~I~~ 152 (243)
+..+||+|||+|.+++.++...|.+.|+|||.|+.++..|.+|++++++.+ +.+++-+.+.- .......+++|++++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence 678999999999999999988899999999999999999999999999865 77775544331 111122478999999
Q ss_pred cC------------------------------cccHHHHHHHHccCcccCeEEEEEeC
Q 026122 153 RA------------------------------VAEMRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 153 ~~------------------------------~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
|. ...+..++..+.|.|+|||.+.+..+
T Consensus 229 NPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 229 NPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred CCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 71 11356778888999999999999886
No 78
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.57 E-value=4.7e-14 Score=125.17 Aligned_cols=104 Identities=16% Similarity=0.109 Sum_probs=88.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 155 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 155 (243)
+..+||||||+|..++.+|+..|+..++|+|+++.+++.+.+++...++.|+.++++|+..+... ..++++|.|+++-.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~-~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL-LPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh-CCCCceeEEEEeCC
Confidence 56899999999999999999999999999999999999999999999999999999999765321 11378999998742
Q ss_pred cc----------HHHHHHHHccCcccCeEEEEEeC
Q 026122 156 AE----------MRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 156 ~~----------~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
.+ ...+++.+.++|+|||.+.+...
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 22 26899999999999999888664
No 79
>PTZ00146 fibrillarin; Provisional
Probab=99.56 E-value=4.2e-13 Score=114.84 Aligned_cols=148 Identities=15% Similarity=0.106 Sum_probs=98.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
++++.+|||+|||+|..+..+|... +..+|++||+++++.+...+.++.. .|+.++.+|+..........+++|+|+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCCCEEE
Confidence 4568899999999999999999875 3569999999987664444443322 578899999864210000125799999
Q ss_pred EcCc-c-cHHHHHHHHccCcccCeEEEEEeC-------CCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEE
Q 026122 152 ARAV-A-EMRILAEYCLPLVRVGGLFVAAKG-------HDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCL 222 (243)
Q Consensus 152 ~~~~-~-~~~~~l~~~~~~LkpgG~l~~~~~-------~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~ 222 (243)
+... . +...++.++.+.|||||.+++... +...+.+.+-.+.+++.||++++... +.....++.+|+..
T Consensus 208 ~Dva~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~--L~Py~~~h~~v~~~ 285 (293)
T PTZ00146 208 ADVAQPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLT--LEPFERDHAVVIGV 285 (293)
T ss_pred EeCCCcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEe--cCCccCCcEEEEEE
Confidence 9652 2 334566788999999999998431 11222233334778899998776643 33334455555555
Q ss_pred ee
Q 026122 223 KS 224 (243)
Q Consensus 223 k~ 224 (243)
..
T Consensus 286 ~~ 287 (293)
T PTZ00146 286 YR 287 (293)
T ss_pred Ec
Confidence 44
No 80
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.56 E-value=4e-14 Score=124.86 Aligned_cols=100 Identities=18% Similarity=0.226 Sum_probs=85.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
..+|||+|||+|.+++.+++..|+.+|+++|+|+.+++.++++++.+++. .+++.+|..+.. .++||+|++|.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~~-----~~~fDlIvsNPP 270 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSDI-----KGRFDMIISNPP 270 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEccccccc-----CCCccEEEECCC
Confidence 45899999999999999998888889999999999999999999998875 577778875521 26899999974
Q ss_pred --------cccHHHHHHHHccCcccCeEEEEEeCC
Q 026122 155 --------VAEMRILAEYCLPLVRVGGLFVAAKGH 181 (243)
Q Consensus 155 --------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (243)
......+++.+.++|+|||.++++...
T Consensus 271 FH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 271 FHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 123588999999999999999988754
No 81
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.56 E-value=1.8e-14 Score=116.35 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=86.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
..+|.|+|||+|..+-.|++++|++.|+|+|.|++|++.|++. +.+++|..+|+.++... .+.|++++|+
T Consensus 31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl~~w~p~----~~~dllfaNAv 101 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----LPDATFEEADLRTWKPE----QPTDLLFANAV 101 (257)
T ss_pred cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----CCCCceecccHhhcCCC----Cccchhhhhhh
Confidence 6799999999999999999999999999999999999988554 45799999999998764 6799999998
Q ss_pred ---cccHHHHHHHHccCcccCeEEEEEeCCCc
Q 026122 155 ---VAEMRILAEYCLPLVRVGGLFVAAKGHDP 183 (243)
Q Consensus 155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 183 (243)
+.+-.+++..+...|.|||.+.+-+..+.
T Consensus 102 lqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 102 LQWLPDHPELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred hhhccccHHHHHHHHHhhCCCceEEEECCCcc
Confidence 45678899999999999999998775443
No 82
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.55 E-value=2.7e-13 Score=106.80 Aligned_cols=121 Identities=17% Similarity=0.217 Sum_probs=96.3
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
.+|||+|||+|.+...|+...-....+|||.|+++++.|+..+++.+++| |+|.+.|+.+-... .++||+|.-.+
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~---~~qfdlvlDKGT 145 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFL---SGQFDLVLDKGT 145 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCccc---ccceeEEeecCc
Confidence 49999999999998888876434569999999999999999999999987 99999999885332 37899888642
Q ss_pred -----------cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeE
Q 026122 155 -----------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ 203 (243)
Q Consensus 155 -----------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 203 (243)
...+...+..+.+.|+|||++++.++..+..|+.+ .+...||....
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~---~f~~~~f~~~~ 202 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVE---EFENFNFEYLS 202 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHH---HHhcCCeEEEE
Confidence 12345677788899999999999998888777754 34466765443
No 83
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.55 E-value=1.1e-13 Score=115.48 Aligned_cols=97 Identities=21% Similarity=0.279 Sum_probs=82.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
+.+|||+|||+|..+..++...+..+++++|+++.+++.+++... .+++++.+|+.+.+... ++||+|+++.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~---~~fD~vi~~~~ 107 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLED---SSFDLIVSNLA 107 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCC---CceeEEEEhhh
Confidence 578999999999999999988888899999999999888876543 36889999999876532 6899999975
Q ss_pred ---cccHHHHHHHHccCcccCeEEEEEe
Q 026122 155 ---VAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 155 ---~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
..+...+++.+.+.|+|||.+++..
T Consensus 108 l~~~~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 108 LQWCDDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hhhccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 3478899999999999999998865
No 84
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.54 E-value=1.8e-13 Score=119.30 Aligned_cols=101 Identities=14% Similarity=0.169 Sum_probs=84.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
++++.+|||||||+|..++.+++.+|+.+++++|. +.+++.++++++..++. +++++.+|+.+... ..+|+|+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~-----~~~D~v~ 220 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-----PEADAVL 220 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC-----CCCCEEE
Confidence 34578999999999999999999999999999998 78999999999999885 59999999876432 3479887
Q ss_pred EcCc----c--cHHHHHHHHccCcccCeEEEEEe
Q 026122 152 ARAV----A--EMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 152 ~~~~----~--~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+..+ . ....+++++.+.|+|||++++..
T Consensus 221 ~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 221 FCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred eEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 6431 1 23578999999999999998874
No 85
>PRK06922 hypothetical protein; Provisional
Probab=99.54 E-value=6.5e-14 Score=130.47 Aligned_cols=104 Identities=16% Similarity=0.221 Sum_probs=85.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
++.+|||+|||+|..+..++...|+.+|+|+|+|+.|++.++++....+. +++++++|+.+++... .+++||+|+++.
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~f-edeSFDvVVsn~ 495 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSF-EKESVDTIVYSS 495 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCcccc-CCCCEEEEEEch
Confidence 37899999999999988899888999999999999999999988765553 5889999998865210 126899999863
Q ss_pred c-----------------ccHHHHHHHHccCcccCeEEEEEeC
Q 026122 155 V-----------------AEMRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 155 ~-----------------~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
. .+...+++++.++|||||.+++..+
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 1 2457899999999999999999764
No 86
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.53 E-value=2.3e-13 Score=116.29 Aligned_cols=113 Identities=16% Similarity=0.193 Sum_probs=91.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
+++.+|||+|||+|..++.++...+ ..+|+++|+++.+++.++++++++++.++++++.|...+... .++||.|++
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~---~~~fD~Vl~ 146 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA---VPKFDAILL 146 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh---ccCCCEEEE
Confidence 4588999999999999988887653 469999999999999999999999998899999998876432 256999998
Q ss_pred cCc--------------------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHH
Q 026122 153 RAV--------------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKN 189 (243)
Q Consensus 153 ~~~--------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 189 (243)
++. ....++++.+.+.|||||+++........+|-++
T Consensus 147 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~ 209 (264)
T TIGR00446 147 DAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEA 209 (264)
T ss_pred cCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHH
Confidence 530 0135689999999999999988776555444333
No 87
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=6.7e-14 Score=113.70 Aligned_cols=103 Identities=23% Similarity=0.331 Sum_probs=85.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122 72 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
.++++.+|||||||||+.+..+|+.- .+|+.+|+.++..+.|+++.+.+|..||.++++|...-... ..+||.|+
T Consensus 69 ~~~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~---~aPyD~I~ 143 (209)
T COG2518 69 ELKPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE---EAPYDRII 143 (209)
T ss_pred CCCCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC---CCCcCEEE
Confidence 35679999999999999999999874 49999999999999999999999998999999998775433 26899999
Q ss_pred EcCcc-c-HHHHHHHHccCcccCeEEEEEeCCCc
Q 026122 152 ARAVA-E-MRILAEYCLPLVRVGGLFVAAKGHDP 183 (243)
Q Consensus 152 ~~~~~-~-~~~~l~~~~~~LkpgG~l~~~~~~~~ 183 (243)
..+-. . ++.+ .+.||+||++++..|...
T Consensus 144 Vtaaa~~vP~~L----l~QL~~gGrlv~PvG~~~ 173 (209)
T COG2518 144 VTAAAPEVPEAL----LDQLKPGGRLVIPVGSGP 173 (209)
T ss_pred EeeccCCCCHHH----HHhcccCCEEEEEEccCC
Confidence 87532 2 3444 458999999999888433
No 88
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.53 E-value=1.7e-13 Score=113.28 Aligned_cols=100 Identities=21% Similarity=0.258 Sum_probs=82.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
.++.+|||+|||+|..+..++... .+|+++|+++++++.+++++++.++.+++++.+|..+.... .++||+|++.
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~I~~~ 151 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA---YAPFDRILVT 151 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc---CCCcCEEEEc
Confidence 457899999999999988888764 48999999999999999999999998899999998653222 2679999997
Q ss_pred CcccHHHHHHHHccCcccCeEEEEEeC
Q 026122 154 AVAEMRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 154 ~~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
+. ...+.+.+.+.|+|||.+++..+
T Consensus 152 ~~--~~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 152 AA--APEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cC--chhhhHHHHHhcCCCcEEEEEEc
Confidence 53 23445677889999999998766
No 89
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.52 E-value=1.2e-12 Score=119.61 Aligned_cols=129 Identities=13% Similarity=0.027 Sum_probs=97.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-cCCCCceEEEE
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVA 152 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~fD~I~~ 152 (243)
.++.+|||+|||+|.+++.+|... .+|+|+|+|+.|++.|++|++.+++.+++++++|+.+..... ...++||+|++
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence 347899999999999999998763 699999999999999999999999988999999997642110 01257999999
Q ss_pred cCc-ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122 153 RAV-AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE 208 (243)
Q Consensus 153 ~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 208 (243)
+.. ....+.++.+.+ ++|++.++++.++.+ -.+++ ..+.+.||++.+++.++
T Consensus 374 dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp~t--laRDl-~~L~~~gY~l~~i~~~D 426 (443)
T PRK13168 374 DPPRAGAAEVMQALAK-LGPKRIVYVSCNPAT--LARDA-GVLVEAGYRLKRAGMLD 426 (443)
T ss_pred CcCCcChHHHHHHHHh-cCCCeEEEEEeChHH--hhccH-HHHhhCCcEEEEEEEec
Confidence 742 224556666555 689988888765432 22232 33456799999999888
No 90
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.52 E-value=1.3e-13 Score=115.67 Aligned_cols=103 Identities=18% Similarity=0.244 Sum_probs=86.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCC---cCCCCceE
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDV---SFREQYDV 149 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~---~~~~~fD~ 149 (243)
++.+|||+|||+|..++.++...+ +++|+++|+++++++.|+++++++++. +++++.+|+.+..... ...++||+
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 378999999999999888887654 689999999999999999999999986 4999999997752110 00257999
Q ss_pred EEEcCc-ccHHHHHHHHccCcccCeEEEE
Q 026122 150 AVARAV-AEMRILAEYCLPLVRVGGLFVA 177 (243)
Q Consensus 150 I~~~~~-~~~~~~l~~~~~~LkpgG~l~~ 177 (243)
|+..+. ..+..+++.+.+.|+|||.+++
T Consensus 148 VfiDa~k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 148 AFVDADKPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred EEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 999864 4678899999999999999885
No 91
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.52 E-value=6.9e-13 Score=120.91 Aligned_cols=129 Identities=17% Similarity=0.117 Sum_probs=98.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-cCCCCceEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVA 150 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~fD~I 150 (243)
..++.+|||+|||+|..++.++... +.++|+++|+++.+++.++++++++|+.+++++++|+.++.... ...++||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 3468899999999999998888764 35799999999999999999999999988999999998764210 012679999
Q ss_pred EEcCc----c----------------------cHHHHHHHHccCcccCeEEEEEeCCCcH-HHHHHHHHHHHHh-CCee
Q 026122 151 VARAV----A----------------------EMRILAEYCLPLVRVGGLFVAAKGHDPQ-EEVKNSERAVQLM-GASL 201 (243)
Q Consensus 151 ~~~~~----~----------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~l~~~-g~~~ 201 (243)
++++. . ...++++.+.+.|||||+++.....-.. +....+...++++ ++.+
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~ 408 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKL 408 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEe
Confidence 98531 0 0468899999999999999887754433 3334445556665 4543
No 92
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=3.6e-13 Score=111.84 Aligned_cols=126 Identities=20% Similarity=0.186 Sum_probs=105.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVA 150 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I 150 (243)
+.++.+|+|.|+|||.++..||... |.++|+.+|+.++.++.|++|.+..++.| +++..+|+.+.... +.||+|
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~----~~vDav 167 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE----EDVDAV 167 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc----cccCEE
Confidence 4569999999999999999999754 66899999999999999999999999876 99999999887553 589999
Q ss_pred EEcCcccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEE
Q 026122 151 VARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC 205 (243)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 205 (243)
+... +++-++++.++..|+|||.+++..+. .+++....+.+++.||...+..
T Consensus 168 ~LDm-p~PW~~le~~~~~Lkpgg~~~~y~P~--veQv~kt~~~l~~~g~~~ie~~ 219 (256)
T COG2519 168 FLDL-PDPWNVLEHVSDALKPGGVVVVYSPT--VEQVEKTVEALRERGFVDIEAV 219 (256)
T ss_pred EEcC-CChHHHHHHHHHHhCCCcEEEEEcCC--HHHHHHHHHHHHhcCccchhhh
Confidence 9864 45567889999999999998887754 3456667777888888655543
No 93
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.51 E-value=4.9e-13 Score=122.24 Aligned_cols=129 Identities=17% Similarity=0.157 Sum_probs=97.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
+.++.+|||+|||+|..++.++... ++++|+++|+++.+++.++++++++|+.+++++++|+.++... ..++||+|+
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~--~~~~fD~Vl 325 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEK--FAEKFDKIL 325 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccch--hcccCCEEE
Confidence 3567899999999999999998775 5689999999999999999999999998899999999876421 126799999
Q ss_pred EcCc----c---------------c-------HHHHHHHHccCcccCeEEEEEeCCCcHHHHH-HHHHHHHHhC-CeeeE
Q 026122 152 ARAV----A---------------E-------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVK-NSERAVQLMG-ASLLQ 203 (243)
Q Consensus 152 ~~~~----~---------------~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~~~~l~~~g-~~~~~ 203 (243)
+++. . + ...+++.+.++|||||.++........+|-. .+...+++.+ +..+.
T Consensus 326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~ 405 (444)
T PRK14902 326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELVP 405 (444)
T ss_pred EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEec
Confidence 8641 0 0 2468999999999999998766544333322 3334455553 55443
No 94
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.51 E-value=1.6e-13 Score=116.89 Aligned_cols=155 Identities=15% Similarity=0.076 Sum_probs=110.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
|++|||||||+|+.+..++.. +...|+|+|.+.....+.+-..+-.|.+. +..+...+++++. . +.||+|+|.+
T Consensus 116 gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~---~~FDtVF~MG 190 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L---GAFDTVFSMG 190 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c---CCcCEEEEee
Confidence 899999999999999888866 34689999999987766655555555443 4444457777765 2 7899999987
Q ss_pred c----ccHHHHHHHHccCcccCeEEEEEe----CC-----------------CcHHHHHHHHHHHHHhCCeeeEEEEEec
Q 026122 155 V----AEMRILAEYCLPLVRVGGLFVAAK----GH-----------------DPQEEVKNSERAVQLMGASLLQLCSVES 209 (243)
Q Consensus 155 ~----~~~~~~l~~~~~~LkpgG~l~~~~----~~-----------------~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 209 (243)
+ .++-..+++++..|++||.+++.. |. +.-+.+..+..+++++||..+++..+..
T Consensus 191 VLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~ 270 (315)
T PF08003_consen 191 VLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSP 270 (315)
T ss_pred ehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCcc
Confidence 4 378888999999999999999653 21 1122456788899999999888776665
Q ss_pred CCCCCceEE--EEE-------E--eeCCCCCCCCCCC
Q 026122 210 QSPFGQRTA--VVC-------L--KSRRTPKKYPRDP 235 (243)
Q Consensus 210 ~~~~~~r~~--v~~-------~--k~~~~~~~yp~~~ 235 (243)
.....+|.- +-. . ...+|=++||.+.
T Consensus 271 Tt~~EQR~T~Wm~~~SL~dFLDp~d~~~TiEGyPAP~ 307 (315)
T PF08003_consen 271 TTIEEQRKTDWMDFQSLEDFLDPNDPSKTIEGYPAPK 307 (315)
T ss_pred CCHHHhccCCCcCcccHHHhcCCCCCCCcccCCCCce
Confidence 544444432 111 1 1244558888753
No 95
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.51 E-value=8.3e-13 Score=109.64 Aligned_cols=123 Identities=18% Similarity=0.186 Sum_probs=91.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
+.+|||+|||+|..+..++.. +.+|+|+|+|+++++.++++....+. .++++.++|+.+.. ++||+|++..
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~fD~ii~~~ 127 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC------GEFDIVVCMD 127 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC------CCcCEEEEhh
Confidence 789999999999999888864 56999999999999999999887776 36999999998763 5799999854
Q ss_pred c------ccHHHHHHHHccCcccCeEEEEEeCCCcH---------------------HHHHHHHHHHHHhCCeeeEEEE
Q 026122 155 V------AEMRILAEYCLPLVRVGGLFVAAKGHDPQ---------------------EEVKNSERAVQLMGASLLQLCS 206 (243)
Q Consensus 155 ~------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---------------------~~~~~~~~~l~~~g~~~~~~~~ 206 (243)
. .+...+++.+.+.+++++.+.+....... ....++.+.++.+||.++..+.
T Consensus 128 ~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 206 (219)
T TIGR02021 128 VLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGL 206 (219)
T ss_pred HHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeec
Confidence 2 24567888888888877665542211100 0224466667788888776654
No 96
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.51 E-value=9.8e-13 Score=109.28 Aligned_cols=129 Identities=18% Similarity=0.258 Sum_probs=100.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
+.+|||+|||+|..+..+++. +.+++++|+++.+++.++++....+..++++.+.|+.+..... .++||+|+++.
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~D~i~~~~~ 121 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG--AKSFDVVTCMEV 121 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC--CCCccEEEehhH
Confidence 679999999999998877764 4579999999999999999988877656899999988775432 26899999864
Q ss_pred ---cccHHHHHHHHccCcccCeEEEEEeCCCcH-H--------------------------HHHHHHHHHHHhCCeeeEE
Q 026122 155 ---VAEMRILAEYCLPLVRVGGLFVAAKGHDPQ-E--------------------------EVKNSERAVQLMGASLLQL 204 (243)
Q Consensus 155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~--------------------------~~~~~~~~l~~~g~~~~~~ 204 (243)
..+...+++.+.+.|+|||.+++....... . ...++.+.+++.|++++++
T Consensus 122 l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~ 201 (224)
T TIGR01983 122 LEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDV 201 (224)
T ss_pred HHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeee
Confidence 457889999999999999998875421110 0 1134666778999998887
Q ss_pred EEEe
Q 026122 205 CSVE 208 (243)
Q Consensus 205 ~~~~ 208 (243)
..+.
T Consensus 202 ~~~~ 205 (224)
T TIGR01983 202 KGLV 205 (224)
T ss_pred eeEE
Confidence 6544
No 97
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.51 E-value=2.6e-13 Score=106.39 Aligned_cols=90 Identities=18% Similarity=0.185 Sum_probs=69.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
+.+|||+|||+|..+..++.. +.+|+|+|+++.+++. .++.....+....... .++||+|+++.
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~---~~~fD~i~~~~~ 87 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFP---DGSFDLIICNDV 87 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCH---SSSEEEEEEESS
T ss_pred CCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhcc---ccchhhHhhHHH
Confidence 789999999999998888654 4599999999998876 2233333333333222 27899999976
Q ss_pred ---cccHHHHHHHHccCcccCeEEEEEeC
Q 026122 155 ---VAEMRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
+.++..+++.+.++|||||++++...
T Consensus 88 l~~~~d~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 88 LEHLPDPEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp GGGSSHHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred HhhcccHHHHHHHHHHhcCCCCEEEEEEc
Confidence 45789999999999999999998773
No 98
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.51 E-value=2.5e-12 Score=107.59 Aligned_cols=128 Identities=18% Similarity=0.249 Sum_probs=98.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
+.+|||||||+|..+..+++. +++|+++|+++.+++.++++....+. +++++.+++.+..... .++||+|++..
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~fD~Ii~~~~ 123 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEH--PGQFDVVTCMEM 123 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhc--CCCccEEEEhhH
Confidence 779999999999998888764 57899999999999999998877666 4788888888764221 26899999853
Q ss_pred ---cccHHHHHHHHccCcccCeEEEEEeCCCcHH---------------------------HHHHHHHHHHHhCCeeeEE
Q 026122 155 ---VAEMRILAEYCLPLVRVGGLFVAAKGHDPQE---------------------------EVKNSERAVQLMGASLLQL 204 (243)
Q Consensus 155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------------------------~~~~~~~~l~~~g~~~~~~ 204 (243)
..+...+++.+.+.|+|||.+++........ ...++.+.+++.||.++..
T Consensus 124 l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~ 203 (233)
T PRK05134 124 LEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDI 203 (233)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeee
Confidence 4578889999999999999988764211100 1234667788999988876
Q ss_pred EEEe
Q 026122 205 CSVE 208 (243)
Q Consensus 205 ~~~~ 208 (243)
..+.
T Consensus 204 ~~~~ 207 (233)
T PRK05134 204 TGLH 207 (233)
T ss_pred eeEE
Confidence 5444
No 99
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.50 E-value=1.7e-13 Score=112.86 Aligned_cols=103 Identities=22% Similarity=0.306 Sum_probs=79.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
++++.+|||||||+|+.+..+|... +..+|++||+++..++.|+++++.++..|++++++|....... ..+||.|+
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~---~apfD~I~ 146 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE---EAPFDRII 146 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG---G-SEEEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc---CCCcCEEE
Confidence 5679999999999999998888775 3468999999999999999999999999999999998765433 26899999
Q ss_pred EcCc-ccHHHHHHHHccCcccCeEEEEEeCC
Q 026122 152 ARAV-AEMRILAEYCLPLVRVGGLFVAAKGH 181 (243)
Q Consensus 152 ~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (243)
+.+. .... ..+.+.|++||++++..+.
T Consensus 147 v~~a~~~ip---~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 147 VTAAVPEIP---EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp ESSBBSS-----HHHHHTEEEEEEEEEEESS
T ss_pred EeeccchHH---HHHHHhcCCCcEEEEEEcc
Confidence 9763 3322 3455689999999987764
No 100
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=2.5e-12 Score=102.30 Aligned_cols=162 Identities=12% Similarity=0.150 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHhc-cCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHCCC
Q 026122 21 LGLFLKKRKQNLQ-KMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPD 99 (243)
Q Consensus 21 l~~~~~~~~~~n~-~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~ 99 (243)
++...+.+..+-. +..+.++.+..++-..-+.... ..-.++ +.+|+|+|||||.+++..+.. +.
T Consensus 4 Le~~l~kl~~f~~p~~~LEQY~Tp~~~Aa~il~~a~-~~g~l~-------------g~~V~DlG~GTG~La~ga~~l-Ga 68 (198)
T COG2263 4 LEILLEKLKGFPNPKLGLEQYRTPAPLAAYILWVAY-LRGDLE-------------GKTVLDLGAGTGILAIGAALL-GA 68 (198)
T ss_pred hhhhhhhhcCCCCCCccceecCCChHHHHHHHHHHH-HcCCcC-------------CCEEEEcCCCcCHHHHHHHhc-CC
Confidence 4444555555543 7778888888877665555544 222232 778999999999999887755 55
Q ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-------cccHHHHHHHHccCcccC
Q 026122 100 WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-------VAEMRILAEYCLPLVRVG 172 (243)
Q Consensus 100 ~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-------~~~~~~~l~~~~~~Lkpg 172 (243)
.+|+|||+++++++.+++|+.+++ .+++++++|+.++. .++|.+++|. .++ ..+++.+.+.-
T Consensus 69 ~~V~~vdiD~~a~ei~r~N~~~l~-g~v~f~~~dv~~~~------~~~dtvimNPPFG~~~rhaD-r~Fl~~Ale~s--- 137 (198)
T COG2263 69 SRVLAVDIDPEALEIARANAEELL-GDVEFVVADVSDFR------GKFDTVIMNPPFGSQRRHAD-RPFLLKALEIS--- 137 (198)
T ss_pred cEEEEEecCHHHHHHHHHHHHhhC-CceEEEEcchhhcC------CccceEEECCCCccccccCC-HHHHHHHHHhh---
Confidence 799999999999999999999843 46999999999975 6799999984 123 23333333321
Q ss_pred eEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCC
Q 026122 173 GLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQS 211 (243)
Q Consensus 173 G~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 211 (243)
-.++-.+......- +.+....+|+.+.....+.++-
T Consensus 138 ~vVYsiH~a~~~~f---~~~~~~~~G~~v~~~~~~~~~i 173 (198)
T COG2263 138 DVVYSIHKAGSRDF---VEKFAADLGGTVTHIERARFPI 173 (198)
T ss_pred heEEEeeccccHHH---HHHHHHhcCCeEEEEEEEEEec
Confidence 23343333332222 2344568898887776666543
No 101
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.50 E-value=4e-13 Score=122.18 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=98.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
+.++.+|||+|||+|..++.++... ++++|+++|+|+++++.+++++++.|+.+++++++|..++... ..++||.|+
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~--~~~~fD~Vl 312 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEY--VQDTFDRIL 312 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhh--hhccCCEEE
Confidence 4568899999999999998888765 4679999999999999999999999998899999999876421 126799999
Q ss_pred EcCcc--------------------------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHH-HHHHHh-CCee
Q 026122 152 ARAVA--------------------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE-RAVQLM-GASL 201 (243)
Q Consensus 152 ~~~~~--------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~l~~~-g~~~ 201 (243)
+++.. ...++++.+.+.|||||.+++..+....+|-.+.. ..++++ ++.+
T Consensus 313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~ 390 (431)
T PRK14903 313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEV 390 (431)
T ss_pred ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcEE
Confidence 85310 13667889999999999999888765545444433 344443 4543
No 102
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.50 E-value=2.1e-13 Score=109.52 Aligned_cols=100 Identities=22% Similarity=0.207 Sum_probs=82.7
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEE-EEEccccccccCCcCCCCceEEEEc--
Q 026122 77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQ-IVRGRAETLGKDVSFREQYDVAVAR-- 153 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~fD~I~~~-- 153 (243)
..||++|||||..--. -...|.++||++|++++|-+++.+.++.....+++ |+.++.++++... ++++|.|++.
T Consensus 78 ~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~--d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLA--DGSYDTVVCTLV 154 (252)
T ss_pred cceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccc--cCCeeeEEEEEE
Confidence 4689999999987322 22237899999999999999999998887666666 9999999987332 3799999985
Q ss_pred --CcccHHHHHHHHccCcccCeEEEEEe
Q 026122 154 --AVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 154 --~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
++.+..+.+++..++|+|||++++++
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 36689999999999999999999876
No 103
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.50 E-value=2.2e-13 Score=116.88 Aligned_cols=102 Identities=20% Similarity=0.199 Sum_probs=78.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCC---CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPD---WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
..+|||+|||+|..+..++...+. .+|+|+|+|+.+++.|+++ ..++++..+|+.+++..+ ++||+|++
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp~~~---~sfD~I~~ 157 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLPFAD---QSLDAIIR 157 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCCCcC---CceeEEEE
Confidence 568999999999999888876542 4899999999999988654 246889999998876543 78999998
Q ss_pred cCcccHHHHHHHHccCcccCeEEEEEeC-CCcHHHHH
Q 026122 153 RAVAEMRILAEYCLPLVRVGGLFVAAKG-HDPQEEVK 188 (243)
Q Consensus 153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~ 188 (243)
... ...++++.++|||||++++... .....++.
T Consensus 158 ~~~---~~~~~e~~rvLkpgG~li~~~p~~~~l~el~ 191 (272)
T PRK11088 158 IYA---PCKAEELARVVKPGGIVITVTPGPRHLFELK 191 (272)
T ss_pred ecC---CCCHHHHHhhccCCCEEEEEeCCCcchHHHH
Confidence 543 2345788999999999998763 33333443
No 104
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.50 E-value=7.9e-13 Score=111.17 Aligned_cols=131 Identities=18% Similarity=0.146 Sum_probs=99.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVA 150 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I 150 (243)
+.+|.+|||.|+|+|.++..+++. .|.++|+..|..++.++.|+++.+.+++. ++++.+.|+.+-.........+|.|
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav 117 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAV 117 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEE
Confidence 456999999999999999999965 47889999999999999999999999996 6999999996532221223679999
Q ss_pred EEcCcccHHHHHHHHccCc-ccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122 151 VARAVAEMRILAEYCLPLV-RVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS 206 (243)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 206 (243)
+..-.. +-..+..+.+.| ++||++++..+. .+++....+.|++.||..++..+
T Consensus 118 fLDlp~-Pw~~i~~~~~~L~~~gG~i~~fsP~--ieQv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 118 FLDLPD-PWEAIPHAKRALKKPGGRICCFSPC--IEQVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp EEESSS-GGGGHHHHHHHE-EEEEEEEEEESS--HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred EEeCCC-HHHHHHHHHHHHhcCCceEEEECCC--HHHHHHHHHHHHHCCCeeeEEEE
Confidence 986443 344567788889 899999888764 45667778889999998766554
No 105
>PRK00811 spermidine synthase; Provisional
Probab=99.49 E-value=1.6e-12 Score=112.10 Aligned_cols=145 Identities=16% Similarity=0.186 Sum_probs=102.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCEEEEEccccccccCCcCCCCceEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-----LLNVQIVRGRAETLGKDVSFREQYDVA 150 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~fD~I 150 (243)
+.+|||||||+|..+..+++..+..+|++||+++.+++.+++.....+ -++++++.+|..++.... .++||+|
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~--~~~yDvI 154 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET--ENSFDVI 154 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC--CCcccEE
Confidence 679999999999998877755445799999999999999999876532 246999999998764321 3689999
Q ss_pred EEcCccc--------HHHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCc-eEEE
Q 026122 151 VARAVAE--------MRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ-RTAV 219 (243)
Q Consensus 151 ~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-r~~v 219 (243)
++..... -.++++.+++.|+|||.+++..+. .....+..+.+.++.. |..........|..++. -..+
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~-F~~v~~~~~~vp~~~~~~w~f~ 233 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEV-FPIVRPYQAAIPTYPSGLWSFT 233 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHH-CCCEEEEEeECCcccCchheeE
Confidence 9964221 277889999999999998876532 2244566666666666 44445444444554344 3445
Q ss_pred EEEe
Q 026122 220 VCLK 223 (243)
Q Consensus 220 ~~~k 223 (243)
++.+
T Consensus 234 ~as~ 237 (283)
T PRK00811 234 FASK 237 (283)
T ss_pred Eeec
Confidence 5544
No 106
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.49 E-value=5e-13 Score=110.33 Aligned_cols=96 Identities=14% Similarity=0.218 Sum_probs=72.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc-----CCcCCCC
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK-----DVSFREQ 146 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~~~~ 146 (243)
++++.+|||||||+|..+..+++.. +.++|+|||+++. ....+++++++|+.+... .....++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 3558899999999999998888775 4579999999981 233568999999988531 0001268
Q ss_pred ceEEEEcCcc--------c-------HHHHHHHHccCcccCeEEEEEe
Q 026122 147 YDVAVARAVA--------E-------MRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 147 fD~I~~~~~~--------~-------~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
||+|+|+... + ...+++.+.++|+|||.+++..
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 9999996421 1 2568899999999999998844
No 107
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.49 E-value=6.7e-13 Score=107.70 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-----CcCCCCc
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-----VSFREQY 147 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~~~f 147 (243)
.++.+|||+|||+|.++..++... +..+|+++|+|+.+ ...+++++++|+.+.... ....++|
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 458899999999999988888765 45789999999853 234688888888764210 0012579
Q ss_pred eEEEEcCcc---------------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEE
Q 026122 148 DVAVARAVA---------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC 205 (243)
Q Consensus 148 D~I~~~~~~---------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 205 (243)
|+|+++... ....+++.+.+.|+|||++++... ....+.++...++.. +....+.
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~--~~~~~~~~l~~l~~~-~~~~~~~ 169 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF--QGEEIDEYLNELRKL-FEKVKVT 169 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc--cCccHHHHHHHHHhh-hceEEEe
Confidence 999986421 136789999999999999988542 223344455544443 5444443
No 108
>PRK04457 spermidine synthase; Provisional
Probab=99.49 E-value=3.3e-13 Score=115.12 Aligned_cols=102 Identities=15% Similarity=0.200 Sum_probs=84.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
+.+|||||||+|.++..++...|+.+|++||+++++++.++++....+. ++++++++|+.++... ..++||+|++++
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~--~~~~yD~I~~D~ 144 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV--HRHSTDVILVDG 144 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh--CCCCCCEEEEeC
Confidence 6799999999999999999888999999999999999999988765443 5699999998775432 136899999865
Q ss_pred cc--------cHHHHHHHHccCcccCeEEEEEe
Q 026122 155 VA--------EMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 155 ~~--------~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
.. ...++++.+.+.|+|||.+++..
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 32 13799999999999999988843
No 109
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.49 E-value=9.3e-13 Score=118.27 Aligned_cols=106 Identities=15% Similarity=0.162 Sum_probs=84.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccccCC-cCCCCceEE
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDV-SFREQYDVA 150 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~-~~~~~fD~I 150 (243)
.++.+|||+|||+|.+++.++. .+..+|++||+|+.+++.+++|++.+++. +++++++|+.++.... ...++||+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 3578999999999999876553 34569999999999999999999999985 6999999998753210 012579999
Q ss_pred EEcCc-------------ccHHHHHHHHccCcccCeEEEEEeC
Q 026122 151 VARAV-------------AEMRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 151 ~~~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
+++.. ..+..+++.+.++|+|||.++..++
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99731 2467777888999999999887664
No 110
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.48 E-value=1.1e-12 Score=119.46 Aligned_cols=127 Identities=15% Similarity=0.124 Sum_probs=94.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
..++.+|||+|||+|..++.++...++.+|+++|+|+.+++.++++++++|+. ++++++|+.+..... ..++||.|++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~~-~~~~fD~Vl~ 319 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQWW-DGQPFDRILL 319 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhhc-ccCCCCEEEE
Confidence 45688999999999999999998776689999999999999999999999885 789999998753210 1257999997
Q ss_pred cCcc--------------------------cHHHHHHHHccCcccCeEEEEEeCCCc-HHHHHHHHHHHHHh-CCee
Q 026122 153 RAVA--------------------------EMRILAEYCLPLVRVGGLFVAAKGHDP-QEEVKNSERAVQLM-GASL 201 (243)
Q Consensus 153 ~~~~--------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~l~~~-g~~~ 201 (243)
++.. ....+++.+.+.|||||++++....-. .+....+...+++. ++.+
T Consensus 320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~ 396 (427)
T PRK10901 320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAEL 396 (427)
T ss_pred CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEE
Confidence 5310 124789999999999999998775332 22223334444454 4443
No 111
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.48 E-value=5.6e-13 Score=116.47 Aligned_cols=102 Identities=19% Similarity=0.265 Sum_probs=82.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
+++.+|||+|||+|..+..+++..+ ..+|+++|+++++++.|+++++.++.++++++++|..+..... .+||+|++
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~---~~fD~Ii~ 155 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF---APYDVIFV 155 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc---CCccEEEE
Confidence 4578999999999999999998765 3589999999999999999999999988999999987654332 57999998
Q ss_pred cCcccHHHHHHHHccCcccCeEEEEEeC
Q 026122 153 RAVAEMRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
... ...+.+.+.+.|+|||++++..+
T Consensus 156 ~~g--~~~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 156 TVG--VDEVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred CCc--hHHhHHHHHHhcCCCCEEEEEeC
Confidence 642 22334456778999999888654
No 112
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.48 E-value=3.8e-12 Score=111.02 Aligned_cols=120 Identities=15% Similarity=0.124 Sum_probs=84.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCEEEEEccccccccCCcCCCCceEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-----LLNVQIVRGRAETLGKDVSFREQYDVA 150 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~fD~I 150 (243)
+.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.++++.+..+ ..++++..+|++++ .++||+|
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l------~~~fD~V 216 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL------SGKYDTV 216 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc------CCCcCEE
Confidence 679999999999999888864 5799999999999999999987652 23578888888764 2689999
Q ss_pred EEcCcc------cHHHHHHHHccCcccCeEEEEEeCCCcH-----------------------HHHHHHHHHHHHhCCee
Q 026122 151 VARAVA------EMRILAEYCLPLVRVGGLFVAAKGHDPQ-----------------------EEVKNSERAVQLMGASL 201 (243)
Q Consensus 151 ~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~-----------------------~~~~~~~~~l~~~g~~~ 201 (243)
++.... ....+++.+.+ +.+||.++. ..+... ....++.+.++.+||++
T Consensus 217 v~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs-~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v 294 (315)
T PLN02585 217 TCLDVLIHYPQDKADGMIAHLAS-LAEKRLIIS-FAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKV 294 (315)
T ss_pred EEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEE-eCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEE
Confidence 986421 23446666654 456666443 221110 01355667778899987
Q ss_pred eEEE
Q 026122 202 LQLC 205 (243)
Q Consensus 202 ~~~~ 205 (243)
...+
T Consensus 295 ~~~~ 298 (315)
T PLN02585 295 ARRE 298 (315)
T ss_pred EEEE
Confidence 6544
No 113
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.48 E-value=3.3e-13 Score=120.87 Aligned_cols=97 Identities=19% Similarity=0.205 Sum_probs=80.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
++++.+|||||||+|.++..++... +++|+|+|+|+++++.++++++ ++ ++++..+|..++ .++||.|++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l------~~~fD~Ivs 234 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL------NGQFDRIVS 234 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc------CCCCCEEEE
Confidence 3568899999999999998888765 6799999999999999998875 33 378888888765 168999998
Q ss_pred cCc------ccHHHHHHHHccCcccCeEEEEEe
Q 026122 153 RAV------AEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 153 ~~~------~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
... .++..+++.+.++|||||.+++..
T Consensus 235 ~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 235 VGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred eCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 642 346889999999999999998754
No 114
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.48 E-value=1.1e-12 Score=120.03 Aligned_cols=124 Identities=18% Similarity=0.160 Sum_probs=95.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
.++.+|||+|||+|..++.++... ++.+|+++|+|+.+++.+++++++.|+.+++++++|+.++.. .++||+|++
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~----~~~fD~Vl~ 324 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP----EEQPDAILL 324 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc----CCCCCEEEE
Confidence 457899999999999988888654 356999999999999999999999999889999999988643 267999997
Q ss_pred cCc----c----------------------cHHHHHHHHccCcccCeEEEEEeCCCcHHH-HHHHHHHHHHh-CCee
Q 026122 153 RAV----A----------------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEE-VKNSERAVQLM-GASL 201 (243)
Q Consensus 153 ~~~----~----------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~l~~~-g~~~ 201 (243)
.+. . ....+++.+.+.|||||++++....-..+| -..+...++.+ ++..
T Consensus 325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~ 401 (445)
T PRK14904 325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFSA 401 (445)
T ss_pred cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEE
Confidence 420 0 124689999999999999999886544333 22333445555 3543
No 115
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.47 E-value=3.3e-13 Score=111.61 Aligned_cols=99 Identities=18% Similarity=0.032 Sum_probs=75.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCCEEEEEccccccccCCcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL------------TQLLNVQIVRGRAETLGKDVSF 143 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~v~~~~~d~~~~~~~~~~ 143 (243)
+.+|||+|||.|..++.+|.+ +.+|+|||+|+.+++.+.+.... ..-.+++++++|+.++....
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-- 110 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD-- 110 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc--
Confidence 679999999999999999964 78999999999999975332110 01125899999999876421
Q ss_pred CCCceEEEEcCc------ccHHHHHHHHccCcccCeEEEEE
Q 026122 144 REQYDVAVARAV------AEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 144 ~~~fD~I~~~~~------~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
.++||.|+.++. .....+++.+.++|||||.+++.
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 257999987541 24677999999999999975544
No 116
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.47 E-value=6.1e-13 Score=127.65 Aligned_cols=128 Identities=15% Similarity=0.171 Sum_probs=100.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccccCCcCCCCceEEEE
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
++.+|||+|||+|..++.++.. +..+|++||+|+.+++.+++|++.+++. +++++++|+.++... ..++||+|++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~--~~~~fDlIil 614 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE--AREQFDLIFI 614 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH--cCCCcCEEEE
Confidence 4789999999999999888864 4458999999999999999999999985 599999998775321 1268999999
Q ss_pred cCc---------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122 153 RAV---------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE 208 (243)
Q Consensus 153 ~~~---------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 208 (243)
+.. .++..++..+.++|+|||.+++..+....... .+.+.+.|+.+..++...
T Consensus 615 DPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~---~~~~~~~g~~~~~i~~~~ 682 (702)
T PRK11783 615 DPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD---EEGLAKLGLKAEEITAKT 682 (702)
T ss_pred CCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh---HHHHHhCCCeEEEEecCC
Confidence 631 13577888999999999999887765432222 555667888877766544
No 117
>PHA03411 putative methyltransferase; Provisional
Probab=99.46 E-value=1.3e-12 Score=110.69 Aligned_cols=118 Identities=12% Similarity=0.082 Sum_probs=89.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
..+|||+|||+|.+++.++...++.+|+|+|+|+.+++.++++. .+++++++|+.++.. .++||+|++|.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~----~~kFDlIIsNPP 135 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES----NEKFDVVISNPP 135 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc----cCCCcEEEEcCC
Confidence 57999999999999888887766689999999999999988753 368899999988753 26799999962
Q ss_pred --------------c---------ccHHHHHHHHccCcccCeEEEEEeCCCc----HHHHHHHHHHHHHhCCeee
Q 026122 155 --------------V---------AEMRILAEYCLPLVRVGGLFVAAKGHDP----QEEVKNSERAVQLMGASLL 202 (243)
Q Consensus 155 --------------~---------~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~~~~~~~~~l~~~g~~~~ 202 (243)
. ..+..++.....+|+|+|.+++..+..+ +-.-.++.+.++..||...
T Consensus 136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEec
Confidence 0 0146788888999999998776653211 2223566777889998543
No 118
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.45 E-value=2.8e-12 Score=112.30 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=91.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 155 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 155 (243)
+.+|||+|||+|.+++.+|.. +.+|+|+|+|+.+++.|+++++.+++.+++++++|+.++.... .++||+|+++..
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~--~~~~D~Vv~dPP 249 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ--GEVPDLVLVNPP 249 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc--CCCCeEEEECCC
Confidence 689999999999999998863 5799999999999999999999999988999999998864321 257999999742
Q ss_pred c-c-HHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122 156 A-E-MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE 208 (243)
Q Consensus 156 ~-~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 208 (243)
. . ...+++.+ ..++|++.+++..++.... +++.. + .|+++.+++.++
T Consensus 250 r~G~~~~~~~~l-~~~~~~~ivyvsc~p~t~~--rd~~~-l--~~y~~~~~~~~D 298 (315)
T PRK03522 250 RRGIGKELCDYL-SQMAPRFILYSSCNAQTMA--KDLAH-L--PGYRIERVQLFD 298 (315)
T ss_pred CCCccHHHHHHH-HHcCCCeEEEEECCcccch--hHHhh-c--cCcEEEEEEEec
Confidence 1 1 12333333 3357788777766654422 23322 3 589999988877
No 119
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.44 E-value=1.3e-12 Score=107.46 Aligned_cols=94 Identities=12% Similarity=0.104 Sum_probs=73.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
++.+|||+|||+|..+..++...++.+++|||+|+++++.|+++. .++++.++|+.+ +.. +++||+|+++.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~~~---~~sfD~V~~~~ 113 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-PFK---DNFFDLVLTKG 113 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-CCC---CCCEEEEEECC
Confidence 377999999999999988988777889999999999999998753 346788888877 332 27899999976
Q ss_pred cc------cHHHHHHHHccCcccCeEEEEEe
Q 026122 155 VA------EMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 155 ~~------~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+. .+..+++++.+.+ ++.+++..
T Consensus 114 vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 114 VLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred hhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 32 3577888888887 44555543
No 120
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.44 E-value=7.7e-12 Score=104.22 Aligned_cols=123 Identities=20% Similarity=0.219 Sum_probs=87.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
+.+|||+|||+|..+..++.. +.+|+|+|+|+.+++.++++....+. .++++..+|+... .++||+|++..
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~fD~v~~~~ 135 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL------LGRFDTVVCLD 135 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc------cCCcCEEEEcc
Confidence 679999999999999888865 46799999999999999999888776 4689999995432 26799999864
Q ss_pred c------ccHHHHHHHHccCcccCeEEEEEeCCCc----------------------HHHHHHHHHHHHHhCCeeeEEEE
Q 026122 155 V------AEMRILAEYCLPLVRVGGLFVAAKGHDP----------------------QEEVKNSERAVQLMGASLLQLCS 206 (243)
Q Consensus 155 ~------~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------------~~~~~~~~~~l~~~g~~~~~~~~ 206 (243)
. .....+++.+.+.+++++.+.+ ..... .-...++.+.++..||.+.+.+.
T Consensus 136 ~l~~~~~~~~~~~l~~l~~~~~~~~~i~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 136 VLIHYPQEDAARMLAHLASLTRGSLIFTF-APYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred hhhcCCHHHHHHHHHHHHhhcCCeEEEEE-CCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeee
Confidence 2 2456677777776654444332 22110 00123455667788888777655
Q ss_pred E
Q 026122 207 V 207 (243)
Q Consensus 207 ~ 207 (243)
+
T Consensus 215 ~ 215 (230)
T PRK07580 215 I 215 (230)
T ss_pred c
Confidence 3
No 121
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.44 E-value=5.2e-13 Score=114.02 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=77.8
Q ss_pred CCeEEEEcCCCCh----HHHHHHHHCC-----CCEEEEEeCCHHHHHHHHHHHH------Hc------------------
Q 026122 76 NLKLVDVGTGAGL----PGLVLAIACP-----DWKVTLLESMNKRCVFLEHAVS------LT------------------ 122 (243)
Q Consensus 76 ~~~VLDiGcG~G~----~~~~la~~~~-----~~~v~~vD~s~~~~~~a~~~~~------~~------------------ 122 (243)
+.+|+|+|||||. +++.++...+ +.+|+|+|+|+.|++.|++.+- ..
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 5699999999996 4555555443 4799999999999999987531 00
Q ss_pred --CC-CCEEEEEccccccccCCcCCCCceEEEEcCc------ccHHHHHHHHccCcccCeEEEEEeC
Q 026122 123 --QL-LNVQIVRGRAETLGKDVSFREQYDVAVARAV------AEMRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 123 --~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
.+ .+|+|.+.|+.+.+.. .++||+|+|+.+ .....+++.+.+.|+|||++++-.+
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~~---~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 180 KPELKERVRFAKHNLLAESPP---LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred ChHHhCcCEEeeccCCCCCCc---cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 01 2488999999886543 278999999763 2456899999999999999988543
No 122
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.43 E-value=1.2e-12 Score=107.86 Aligned_cols=103 Identities=25% Similarity=0.411 Sum_probs=89.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEE-ccccccccCCcCCCCceEEE
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVR-GRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~-~d~~~~~~~~~~~~~fD~I~ 151 (243)
+.++|||||++.|+.++.+|...| +.+++.||+++++.+.|++++++.|+.+ ++++. +|..+.-.. ...++||+||
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~-~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR-LLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh-ccCCCccEEE
Confidence 478999999999999999999888 7899999999999999999999999976 88888 577664332 1237899999
Q ss_pred EcC-cccHHHHHHHHccCcccCeEEEEE
Q 026122 152 ARA-VAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 152 ~~~-~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
..+ -.++..+++.+.++|+|||.+++-
T Consensus 138 IDadK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 138 IDADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 976 557899999999999999998853
No 123
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.43 E-value=3.6e-12 Score=115.94 Aligned_cols=124 Identities=17% Similarity=0.148 Sum_probs=90.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
..++.+|||+|||+|..+..++...++++|+|+|+++++++.+++++++.|+. .+.+..+|..+.... ...++||.|+
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~-~~~~~fD~Vl 314 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW-AENEQFDRIL 314 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc-ccccccCEEE
Confidence 34688999999999999999998777789999999999999999999999986 234466776544321 0126799999
Q ss_pred EcC----c------cc----------------HHHHHHHHccCcccCeEEEEEeCCCcHHHHH-HHHHHHHHh
Q 026122 152 ARA----V------AE----------------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVK-NSERAVQLM 197 (243)
Q Consensus 152 ~~~----~------~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~~~~l~~~ 197 (243)
+.+ . ++ ...+++.+.+.|||||.+++.......+|-. .+...++++
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~ 387 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEH 387 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhC
Confidence 752 1 11 3679999999999999999887654333322 233344455
No 124
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.42 E-value=6.2e-12 Score=112.52 Aligned_cols=124 Identities=13% Similarity=0.101 Sum_probs=94.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
++.+|||+|||+|.+++.+|. ++.+|+|||+|+.+++.+++|++.+++++++++++|+.++... ...+||+|+++.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~--~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~vi~DP 308 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAG--PDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA--QMSAPELVLVNP 308 (374)
T ss_pred CCCEEEEccCCccHHHHHHhh--cCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh--cCCCCCEEEECC
Confidence 367999999999999988884 3579999999999999999999999998899999999875421 124699999974
Q ss_pred cc--cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122 155 VA--EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE 208 (243)
Q Consensus 155 ~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 208 (243)
.- -...+++.+. .++|++.+++..++.+ -.+++.. | .||.+.+++.++
T Consensus 309 Pr~G~~~~~l~~l~-~~~p~~ivyvsc~p~T--laRDl~~-L--~gy~l~~~~~~D 358 (374)
T TIGR02085 309 PRRGIGKELCDYLS-QMAPKFILYSSCNAQT--MAKDIAE-L--SGYQIERVQLFD 358 (374)
T ss_pred CCCCCcHHHHHHHH-hcCCCeEEEEEeCHHH--HHHHHHH-h--cCceEEEEEEec
Confidence 21 1245555554 4789998888776433 2333333 2 689999988877
No 125
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.41 E-value=8.5e-12 Score=100.32 Aligned_cols=95 Identities=16% Similarity=0.246 Sum_probs=73.8
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc-
Q 026122 77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV- 155 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~- 155 (243)
.++||+|||.|.++..||.+. .+++++|+|+.+++.|++..+. ..+|++++.++.+..+. ++||+|+...+
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~~P~----~~FDLIV~SEVl 116 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAG--LPHVEWIQADVPEFWPE----GRFDLIVLSEVL 116 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---S----S-EEEEEEES-G
T ss_pred ceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCCCCC----CCeeEEEEehHh
Confidence 589999999999999998764 5899999999999999987764 46799999999887543 78999998752
Q ss_pred ------ccHHHHHHHHccCcccCeEEEEEe
Q 026122 156 ------AEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 156 ------~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
.++..+++.+...|+|||.+++-+
T Consensus 117 YYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 117 YYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp GGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 246778999999999999999865
No 126
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.40 E-value=1e-12 Score=107.89 Aligned_cols=103 Identities=26% Similarity=0.356 Sum_probs=85.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCC---cCCCCceEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDV---SFREQYDVA 150 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~---~~~~~fD~I 150 (243)
..+||||||++|+.++.+|...| +++|+.+|++++..+.|++++++.|+. +|+++.+|+.+..... ...++||+|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 67999999999999999998775 689999999999999999999999986 5999999997742210 002579999
Q ss_pred EEcC-cccHHHHHHHHccCcccCeEEEEE
Q 026122 151 VARA-VAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 151 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
+..+ -..+..+++.+.++|+|||.+++-
T Consensus 126 FiDa~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 126 FIDADKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcccccchhhHHHHHhhhccCCeEEEEc
Confidence 9987 457889999999999999998864
No 127
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.40 E-value=3.9e-12 Score=90.93 Aligned_cols=98 Identities=26% Similarity=0.381 Sum_probs=79.5
Q ss_pred eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCcc-
Q 026122 78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVA- 156 (243)
Q Consensus 78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~- 156 (243)
+|+|+|||+|..+..++. .+..+++++|.++.++..+++.....+..+++++.+|+.+.... ..++||+|+++...
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE--ADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc--cCCceEEEEEcccee
Confidence 589999999999877776 56789999999999999888655445555699999999887541 12679999997643
Q ss_pred ----cHHHHHHHHccCcccCeEEEEE
Q 026122 157 ----EMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 157 ----~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
....+++.+.+.++|||.+++.
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4588999999999999998875
No 128
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.39 E-value=5.7e-12 Score=102.87 Aligned_cols=124 Identities=19% Similarity=0.130 Sum_probs=95.2
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCcc
Q 026122 77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVA 156 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~ 156 (243)
..+||||||.|...+.+|..+|+..++|||++...+..+.+.+.+.+++|+.++++|+..+......+++.|.|+.+-..
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 38999999999999999999999999999999999999999999999999999999988733211113789999986311
Q ss_pred ------------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHh--CCeee
Q 026122 157 ------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLM--GASLL 202 (243)
Q Consensus 157 ------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~--g~~~~ 202 (243)
--..+++.+.+.|+|||.+.+.+.. .+-...+.+.+... +|...
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~--~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV--EEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES---HHHHHHHHHHHHHHSTTEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHhcCcCeEEc
Confidence 1378999999999999999886653 34445566667774 55543
No 129
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.39 E-value=6e-12 Score=102.91 Aligned_cols=103 Identities=15% Similarity=0.040 Sum_probs=80.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 155 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 155 (243)
+.+|||+|||+|.+++.++.. ...+|+++|.++.+++.+++|++.+++.+++++++|+.+..... .++||+|+++..
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr-~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~--~~~fDlV~~DPP 130 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSR-YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP--GTPHNVVFVDPP 130 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc--CCCceEEEECCC
Confidence 679999999999999754433 34799999999999999999999999888999999997743211 246999999853
Q ss_pred --c-cHHHHHHHHcc--CcccCeEEEEEeCC
Q 026122 156 --A-EMRILAEYCLP--LVRVGGLFVAAKGH 181 (243)
Q Consensus 156 --~-~~~~~l~~~~~--~LkpgG~l~~~~~~ 181 (243)
. -...+++.+.. +|+|+|.+++.+..
T Consensus 131 y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 131 FRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 1 23455555544 58999998887764
No 130
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.38 E-value=2.9e-12 Score=106.34 Aligned_cols=98 Identities=17% Similarity=0.005 Sum_probs=74.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCCEEEEEccccccccCCcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL------------TQLLNVQIVRGRAETLGKDVSF 143 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~v~~~~~d~~~~~~~~~~ 143 (243)
+.+|||+|||.|..++.||.. +++|+|||+|+.+++.+.+.... ....+|++.++|+.++....
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~-- 113 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD-- 113 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc--
Confidence 679999999999999999964 78999999999999876321100 01135899999999875432
Q ss_pred CCCceEEEEcC------cccHHHHHHHHccCcccCeEEEE
Q 026122 144 REQYDVAVARA------VAEMRILAEYCLPLVRVGGLFVA 177 (243)
Q Consensus 144 ~~~fD~I~~~~------~~~~~~~l~~~~~~LkpgG~l~~ 177 (243)
...||.|+.++ ......+++.+.++|+|||.+++
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 25799999754 22468899999999999986443
No 131
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.38 E-value=9.4e-12 Score=113.41 Aligned_cols=129 Identities=15% Similarity=0.084 Sum_probs=96.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-cCCCCceEEEE
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVA 152 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~fD~I~~ 152 (243)
.++.+|||+|||+|.+++.+|.. ..+|+|+|+|+.+++.|++|++.+++.|++++.+|+.+..... ...++||+|++
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~ 368 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLL 368 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEE
Confidence 44679999999999999999875 3689999999999999999999999989999999997742110 01246999999
Q ss_pred cCcc-c-HHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122 153 RAVA-E-MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE 208 (243)
Q Consensus 153 ~~~~-~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 208 (243)
+... . ...+++.+.+ ++|++.+++...+ ..+..-...+.+.|+.+..+..++
T Consensus 369 dPPr~G~~~~~l~~l~~-l~~~~ivyvsc~p---~tlard~~~l~~~gy~~~~~~~~D 422 (431)
T TIGR00479 369 DPPRKGCAAEVLRTIIE-LKPERIVYVSCNP---ATLARDLEFLCKEGYGITWVQPVD 422 (431)
T ss_pred CcCCCCCCHHHHHHHHh-cCCCEEEEEcCCH---HHHHHHHHHHHHCCeeEEEEEEec
Confidence 6522 1 3566665554 7898877775443 233333455667899988888776
No 132
>PLN02476 O-methyltransferase
Probab=99.38 E-value=4e-12 Score=108.51 Aligned_cols=104 Identities=24% Similarity=0.267 Sum_probs=87.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCC---cCCCCceE
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDV---SFREQYDV 149 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~---~~~~~fD~ 149 (243)
+.++|||||||+|..++.+|...+ +.+|+++|.++++.+.|++++++.|+. +++++.+|+.+..... ...++||+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 378999999999999999998654 679999999999999999999999996 5999999987743210 01257999
Q ss_pred EEEcCc-ccHHHHHHHHccCcccCeEEEEE
Q 026122 150 AVARAV-AEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 150 I~~~~~-~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
|+..+. ..+..+++.+.++|+|||.+++-
T Consensus 198 VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 198 AFVDADKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 999874 46899999999999999998853
No 133
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.37 E-value=6.5e-12 Score=115.82 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=89.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 155 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 155 (243)
+.+|||||||+|..+..++.. ..+|+|+|+++.+++.+++.. ....+++++++|+.+.... ...++||+|+++..
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~~~~~~-~~~~~fD~I~~~~~ 112 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESIN--GHYKNVKFMCADVTSPDLN-ISDGSVDLIFSNWL 112 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHh--ccCCceEEEEecccccccC-CCCCCEEEEehhhh
Confidence 679999999999999999876 369999999999998765422 1235699999998643211 01268999999752
Q ss_pred ----c--cHHHHHHHHccCcccCeEEEEEeCC-------------CcHHHHHHHHHHHHHhCCeeeE
Q 026122 156 ----A--EMRILAEYCLPLVRVGGLFVAAKGH-------------DPQEEVKNSERAVQLMGASLLQ 203 (243)
Q Consensus 156 ----~--~~~~~l~~~~~~LkpgG~l~~~~~~-------------~~~~~~~~~~~~l~~~g~~~~~ 203 (243)
. ....+++.+.++|||||++++.... ........+.+.+.++|+....
T Consensus 113 l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 113 LMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDED 179 (475)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCC
Confidence 1 2578999999999999999886421 1111345666777787776543
No 134
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.35 E-value=8e-11 Score=100.93 Aligned_cols=145 Identities=14% Similarity=0.077 Sum_probs=101.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCEEEEEccccccccCCcCCCCceEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ----LLNVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
+.+|||||||+|..+..+++..+..+|+++|+++++++.+++.....+ ..+++++.+|..++.... .++||+|+
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~--~~~yDvIi 150 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT--ENTFDVII 150 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC--CCCccEEE
Confidence 569999999999988777755446799999999999999999875532 235888888886643221 26899999
Q ss_pred EcCcc------c--HHHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCC-ceEEEE
Q 026122 152 ARAVA------E--MRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAVV 220 (243)
Q Consensus 152 ~~~~~------~--~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~r~~v~ 220 (243)
+.... . ..++++.+++.|+|||.+++..+. ...+.+..+.+.++.. |..........|..+. .-..++
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~-F~~v~~~~~~vp~~~~g~~~~~~ 229 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEA-FPITEYYTANIPTYPSGLWTFTI 229 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHH-CCCeEEEEEEcCccccchhEEEE
Confidence 96521 1 468889999999999998886532 2244455555656655 5555555445555433 345555
Q ss_pred EEe
Q 026122 221 CLK 223 (243)
Q Consensus 221 ~~k 223 (243)
+.|
T Consensus 230 as~ 232 (270)
T TIGR00417 230 GSK 232 (270)
T ss_pred EEC
Confidence 555
No 135
>PRK06202 hypothetical protein; Provisional
Probab=99.33 E-value=4e-11 Score=100.42 Aligned_cols=89 Identities=21% Similarity=0.272 Sum_probs=67.5
Q ss_pred CCeEEEEcCCCChHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIA----CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
+.+|||+|||+|.++..++.. .++.+|+|+|+|++|++.++++.... ++++...+...++.. +++||+|+
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~---~~~fD~V~ 134 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAE---GERFDVVT 134 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEeccccccc---CCCccEEE
Confidence 679999999999998888753 24569999999999999998765433 355666666555432 26899999
Q ss_pred EcCc----cc--HHHHHHHHccCcc
Q 026122 152 ARAV----AE--MRILAEYCLPLVR 170 (243)
Q Consensus 152 ~~~~----~~--~~~~l~~~~~~Lk 170 (243)
++.. .+ ...+++++.++++
T Consensus 135 ~~~~lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 135 SNHFLHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred ECCeeecCChHHHHHHHHHHHHhcC
Confidence 9752 22 4579999999987
No 136
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.33 E-value=1.3e-10 Score=101.31 Aligned_cols=80 Identities=14% Similarity=0.248 Sum_probs=61.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-CCC-CEEEEE-ccccccccCC-cCCCCceEE
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-QLL-NVQIVR-GRAETLGKDV-SFREQYDVA 150 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~-~v~~~~-~d~~~~~~~~-~~~~~fD~I 150 (243)
.+.++||||||+|.+...++...++++++|+|+++.+++.|+++++.+ ++. +++++. .+..++.... ...++||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 357999999999998888887778899999999999999999999999 786 487764 3333322110 012689999
Q ss_pred EEcC
Q 026122 151 VARA 154 (243)
Q Consensus 151 ~~~~ 154 (243)
+||-
T Consensus 194 vcNP 197 (321)
T PRK11727 194 LCNP 197 (321)
T ss_pred EeCC
Confidence 9983
No 137
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.32 E-value=1e-10 Score=95.06 Aligned_cols=115 Identities=12% Similarity=0.066 Sum_probs=87.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc-cccCCcCCCCceEEEEc-
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDVAVAR- 153 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~fD~I~~~- 153 (243)
+.-|||||||||..+-.+.. ++...+|+|+|+.|++.|.+ +... -.++.+|+-+ +++. ++.||.+|+-
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~--~Gh~wiGvDiSpsML~~a~~--~e~e---gdlil~DMG~Glpfr---pGtFDg~ISIS 120 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSD--SGHQWIGVDISPSMLEQAVE--RELE---GDLILCDMGEGLPFR---PGTFDGVISIS 120 (270)
T ss_pred CcEEEEeccCCCcchheecc--CCceEEeecCCHHHHHHHHH--hhhh---cCeeeeecCCCCCCC---CCccceEEEee
Confidence 56899999999999866663 46899999999999999986 2222 2466667654 4444 3899999983
Q ss_pred -------C-------cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCe
Q 026122 154 -------A-------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGAS 200 (243)
Q Consensus 154 -------~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~ 200 (243)
+ ...+..|+..++..|++|++.++-.-+....++..+.+...++||.
T Consensus 121 AvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 121 AVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred eeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccC
Confidence 2 1136778899999999999988877666677777778777788875
No 138
>PRK01581 speE spermidine synthase; Validated
Probab=99.32 E-value=8.1e-11 Score=103.49 Aligned_cols=128 Identities=13% Similarity=0.063 Sum_probs=92.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-----HHHc--CCCCEEEEEccccccccCCcCCCCce
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHA-----VSLT--QLLNVQIVRGRAETLGKDVSFREQYD 148 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~-----~~~~--~~~~v~~~~~d~~~~~~~~~~~~~fD 148 (243)
+.+||+||||+|..+..+.+..+..+|++||+++++++.|++. ..+. ..++++++.+|+.++.... .++||
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~--~~~YD 228 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP--SSLYD 228 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc--CCCcc
Confidence 6799999999999776666544457999999999999999962 1112 2346999999998864321 36899
Q ss_pred EEEEcCccc---------HHHHHHHHccCcccCeEEEEEeCC-Cc-HHHHHHHHHHHHHhCCeeeEEE
Q 026122 149 VAVARAVAE---------MRILAEYCLPLVRVGGLFVAAKGH-DP-QEEVKNSERAVQLMGASLLQLC 205 (243)
Q Consensus 149 ~I~~~~~~~---------~~~~l~~~~~~LkpgG~l~~~~~~-~~-~~~~~~~~~~l~~~g~~~~~~~ 205 (243)
+|++..... -.++++.+++.|+|||.+++..+. .. ...+..+.+.+++.++......
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~ 296 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYH 296 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEE
Confidence 999974211 267899999999999998876532 21 2233456777889888665444
No 139
>PLN02366 spermidine synthase
Probab=99.32 E-value=1.9e-10 Score=100.11 Aligned_cols=149 Identities=13% Similarity=0.033 Sum_probs=102.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc--CC--CCEEEEEccccccccCCcCCCCceEE
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--QL--LNVQIVRGRAETLGKDVSFREQYDVA 150 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~v~~~~~d~~~~~~~~~~~~~fD~I 150 (243)
.+.+||+||||.|..+..+++..+..+|+.||+++.+++.+++..... ++ ++++++.+|..++.... ..++||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~-~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA-PEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc-cCCCCCEE
Confidence 378999999999999888876533468999999999999999987653 23 35999999986653211 02579999
Q ss_pred EEcCcc--------cHHHHHHHHccCcccCeEEEEEeCC-C-cHHHHHHHHHHHHHhCCeeeEEEEEecCCCCC-ceEEE
Q 026122 151 VARAVA--------EMRILAEYCLPLVRVGGLFVAAKGH-D-PQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAV 219 (243)
Q Consensus 151 ~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~-~-~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~r~~v 219 (243)
++.... --.++++.+++.|+|||.++.-.+. + ..+.+..+.+.++......+.......|.-++ .-..+
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~ 249 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFV 249 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEE
Confidence 996522 1367899999999999998764432 2 24455666666666643344443334454443 45556
Q ss_pred EEEee
Q 026122 220 VCLKS 224 (243)
Q Consensus 220 ~~~k~ 224 (243)
++.+.
T Consensus 250 ~as~~ 254 (308)
T PLN02366 250 LCSKE 254 (308)
T ss_pred EEECC
Confidence 66554
No 140
>PRK03612 spermidine synthase; Provisional
Probab=99.32 E-value=3.1e-11 Score=112.34 Aligned_cols=123 Identities=16% Similarity=0.130 Sum_probs=93.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHH--HH-----cCCCCEEEEEccccccccCCcCCC
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAV--SL-----TQLLNVQIVRGRAETLGKDVSFRE 145 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~--~~-----~~~~~v~~~~~d~~~~~~~~~~~~ 145 (243)
+++++|||||||+|..+..+++ ++. .+|++||+|+++++.++++. .. .+.++++++++|..+.... ..+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~--~~~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK--LAE 372 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh--CCC
Confidence 3478999999999999877775 455 79999999999999999842 22 1224699999999875432 136
Q ss_pred CceEEEEcCcc---------cHHHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCC
Q 026122 146 QYDVAVARAVA---------EMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGA 199 (243)
Q Consensus 146 ~fD~I~~~~~~---------~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~ 199 (243)
+||+|+++... --.++++.+++.|+|||.+++..+. ...+.+.++.+.+++.||
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 89999997421 1246889999999999998876532 235566778888999999
No 141
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.31 E-value=1.3e-11 Score=106.76 Aligned_cols=96 Identities=22% Similarity=0.313 Sum_probs=78.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
+++|||+|||||.+++..|++. ..+|+|||.|.- ++.|++.++.+++.+ |+++++.++++..+ .++.|+|++.-
T Consensus 61 dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~i-a~~a~~iv~~N~~~~ii~vi~gkvEdi~LP---~eKVDiIvSEW 135 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSI-ADFARKIVKDNGLEDVITVIKGKVEDIELP---VEKVDIIVSEW 135 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhC-cceEEEEechHH-HHHHHHHHHhcCccceEEEeecceEEEecC---ccceeEEeehh
Confidence 8899999999999999888774 679999999975 499999999999987 99999999998654 27999999953
Q ss_pred cc-------cHHHHHHHHccCcccCeEEE
Q 026122 155 VA-------EMRILAEYCLPLVRVGGLFV 176 (243)
Q Consensus 155 ~~-------~~~~~l~~~~~~LkpgG~l~ 176 (243)
.. -+..++-.=-++|+|||.++
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 22 23344444447999999977
No 142
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.29 E-value=1.3e-10 Score=103.52 Aligned_cols=123 Identities=14% Similarity=0.090 Sum_probs=89.5
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-------------C
Q 026122 77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------------F 143 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-------------~ 143 (243)
.+|||++||+|.+++.+++.. .+|+|||.|+.+++.+++|++.++++|++++++|+.++..... .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 579999999999999888663 5899999999999999999999999889999999987421100 0
Q ss_pred CCCceEEEEcCcc--cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122 144 REQYDVAVARAVA--EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE 208 (243)
Q Consensus 144 ~~~fD~I~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 208 (243)
..+||+|+..... -.+.+++.+.+ |++.+++..++.+ -.+++.. |.. ||.+.+++.++
T Consensus 286 ~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvSC~p~t--larDl~~-L~~-gY~l~~v~~~D 345 (362)
T PRK05031 286 SYNFSTIFVDPPRAGLDDETLKLVQA---YERILYISCNPET--LCENLET-LSQ-THKVERFALFD 345 (362)
T ss_pred CCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEEeCHHH--HHHHHHH-HcC-CcEEEEEEEcc
Confidence 1258999996421 13555555544 6777777666522 2233333 333 99999998877
No 143
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.29 E-value=7.6e-11 Score=101.13 Aligned_cols=98 Identities=19% Similarity=0.319 Sum_probs=79.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
++.|||+|||+|+++...|+. ++.+|++||.| +|.+.|++.++.+.+. +|.++.+-++++..+ ++.|+||+..
T Consensus 178 ~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP----Ek~DviISEP 251 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQA-GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP----EKVDVIISEP 251 (517)
T ss_pred CcEEEEecCCccHHHHHHHHh-CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc----hhccEEEecc
Confidence 789999999999999777766 56899999998 4889999999988775 499999999998764 7999999964
Q ss_pred ccc-------HHHHHHHHccCcccCeEEEEEeC
Q 026122 155 VAE-------MRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 155 ~~~-------~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
... ++..+ .+++.|||.|.++-..|
T Consensus 252 MG~mL~NERMLEsYl-~Ark~l~P~GkMfPT~g 283 (517)
T KOG1500|consen 252 MGYMLVNERMLESYL-HARKWLKPNGKMFPTVG 283 (517)
T ss_pred chhhhhhHHHHHHHH-HHHhhcCCCCcccCccc
Confidence 321 23333 46799999999885444
No 144
>PHA03412 putative methyltransferase; Provisional
Probab=99.29 E-value=1.6e-11 Score=101.92 Aligned_cols=90 Identities=14% Similarity=0.124 Sum_probs=71.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC---PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
+.+|||+|||+|.+++.+++.. +..+|+|||+++.+++.|+++.. ++.++++|+..... .++||+|++
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~~~~~~~D~~~~~~----~~~FDlIIs 120 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----EATWINADALTTEF----DTLFDMAIS 120 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----CCEEEEcchhcccc----cCCccEEEE
Confidence 6799999999999998888753 35699999999999999997743 47899999987543 268999999
Q ss_pred cC--------c--------ccHHHHHHHHccCcccCeE
Q 026122 153 RA--------V--------AEMRILAEYCLPLVRVGGL 174 (243)
Q Consensus 153 ~~--------~--------~~~~~~l~~~~~~LkpgG~ 174 (243)
|- . .....+++.+.+++++|+.
T Consensus 121 NPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 121 NPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 73 0 1256688888887777765
No 145
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.28 E-value=5.1e-11 Score=95.05 Aligned_cols=98 Identities=15% Similarity=0.066 Sum_probs=73.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
++.+|||+|||+|.++..++.. +.+|+++|+++.+++.++++... ..+++++++|+.++.... .+||.|+++.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~---~~~d~vi~n~ 85 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPK---LQPYKVVGNL 85 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccc---cCCCEEEECC
Confidence 3679999999999999888866 57999999999999999988754 347999999999886532 4699999985
Q ss_pred ccc-HHHHHHHHcc--CcccCeEEEEEe
Q 026122 155 VAE-MRILAEYCLP--LVRVGGLFVAAK 179 (243)
Q Consensus 155 ~~~-~~~~l~~~~~--~LkpgG~l~~~~ 179 (243)
.-. ...++..+.+ .+.++|.+++..
T Consensus 86 Py~~~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 86 PYNISTPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred CcccHHHHHHHHHhcCCCcceEEEEEEH
Confidence 211 1333443332 244777777644
No 146
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.27 E-value=2.9e-11 Score=105.19 Aligned_cols=104 Identities=13% Similarity=-0.009 Sum_probs=75.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcC-CCCEEEEEccccccc-cCCcCC-CCceEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQ-LLNVQIVRGRAETLG-KDVSFR-EQYDVAV 151 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~~~d~~~~~-~~~~~~-~~fD~I~ 151 (243)
+.+|||+|||+|..+..++...+ +.+|+++|+|++|++.++++.+... -.++.++++|+.+.. ...... +...+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 67999999999999988887765 5799999999999999988876532 124788999998742 221100 1122333
Q ss_pred EcC------cccHHHHHHHHccCcccCeEEEEEe
Q 026122 152 ARA------VAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 152 ~~~------~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+.. ..+...+++.+.+.|+|||.+++-.
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 322 2246778999999999999988744
No 147
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.27 E-value=2.2e-11 Score=99.43 Aligned_cols=100 Identities=16% Similarity=0.259 Sum_probs=77.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
+.++.+|+|+.||.|..++.+|+..++..|+|+|+++.+++.+++|++.+++++ +.++++|..++.. ...||-|+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~----~~~~drvi 174 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP----EGKFDRVI 174 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-------TT-EEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC----ccccCEEE
Confidence 456899999999999999999986677899999999999999999999999976 8999999999865 27899999
Q ss_pred EcCcccHHHHHHHHccCcccCeEEE
Q 026122 152 ARAVAEMRILAEYCLPLVRVGGLFV 176 (243)
Q Consensus 152 ~~~~~~~~~~l~~~~~~LkpgG~l~ 176 (243)
++....-..++..+.+++++||.+-
T Consensus 175 m~lp~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 175 MNLPESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp E--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred ECChHHHHHHHHHHHHHhcCCcEEE
Confidence 9876666678888999999999864
No 148
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.26 E-value=3.8e-11 Score=101.17 Aligned_cols=102 Identities=16% Similarity=0.196 Sum_probs=85.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCc----CCCCceE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVS----FREQYDV 149 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~----~~~~fD~ 149 (243)
..+|||||+++|..++.+|... ++++|+.+|.+++..+.|++++++.|+. +|+++.+++.+...... ..++||+
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 6799999999999999999875 4689999999999999999999999985 59999999877532100 1258999
Q ss_pred EEEcCc-ccHHHHHHHHccCcccCeEEEE
Q 026122 150 AVARAV-AEMRILAEYCLPLVRVGGLFVA 177 (243)
Q Consensus 150 I~~~~~-~~~~~~l~~~~~~LkpgG~l~~ 177 (243)
|+..+. ..+...++.+.++|+|||.+++
T Consensus 160 iFiDadK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 160 IFVDADKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence 999874 4678888999999999999875
No 149
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.26 E-value=1.3e-10 Score=94.69 Aligned_cols=122 Identities=11% Similarity=0.103 Sum_probs=84.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc-cccCCcCCCCceEEEE
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDVAVA 152 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~fD~I~~ 152 (243)
+++.+|||+|||+|.++..++.. .+..++|+|+|+++++.+++ .+++++++|+.+ +.... +++||+|++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~~l~~~~--~~sfD~Vi~ 81 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-------RGVNVIQGDLDEGLEAFP--DKSFDYVIL 81 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhhcccccC--CCCcCEEEE
Confidence 34789999999999998777755 35789999999998887753 246788888876 32111 268999999
Q ss_pred cC----cccHHHHHHHHccCcccCeEEEEEeCC-------------------------------CcHHHHHHHHHHHHHh
Q 026122 153 RA----VAEMRILAEYCLPLVRVGGLFVAAKGH-------------------------------DPQEEVKNSERAVQLM 197 (243)
Q Consensus 153 ~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~-------------------------------~~~~~~~~~~~~l~~~ 197 (243)
+. ..+...+++++.+.++++ ++..+. .......++.+.++.+
T Consensus 82 ~~~l~~~~d~~~~l~e~~r~~~~~---ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~ 158 (194)
T TIGR02081 82 SQTLQATRNPEEILDEMLRVGRHA---IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGEL 158 (194)
T ss_pred hhHhHcCcCHHHHHHHHHHhCCeE---EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHC
Confidence 75 456788888887776543 221100 0011245567788899
Q ss_pred CCeeeEEEEEe
Q 026122 198 GASLLQLCSVE 208 (243)
Q Consensus 198 g~~~~~~~~~~ 208 (243)
||++++...+.
T Consensus 159 Gf~v~~~~~~~ 169 (194)
T TIGR02081 159 NLRILDRAAFD 169 (194)
T ss_pred CCEEEEEEEec
Confidence 99988876543
No 150
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.25 E-value=4.3e-11 Score=107.11 Aligned_cols=101 Identities=19% Similarity=0.267 Sum_probs=86.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 155 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 155 (243)
+.+|||++||+|..++.+|...+..+|+++|+++.+++.+++|++.+++.++++.++|+..+... .++||+|+++..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~---~~~fD~V~lDP~ 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE---ERKFDVVDIDPF 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh---cCCCCEEEECCC
Confidence 35899999999999999998766569999999999999999999999998888999999875431 257999999876
Q ss_pred ccHHHHHHHHccCcccCeEEEEEe
Q 026122 156 AEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 156 ~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
.....+++.+.+.+++||.+++..
T Consensus 135 Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 666788888788899999999863
No 151
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.23 E-value=3.4e-10 Score=100.51 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=89.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-c---C--------
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-S---F-------- 143 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~---~-------- 143 (243)
+.+|||+|||+|.+++.++... .+|+|||+++++++.+++|++.+++.|++++++|+.++.... . .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 3479999999999999888764 499999999999999999999999988999999998753210 0 0
Q ss_pred -CCCceEEEEcCcc--cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122 144 -REQYDVAVARAVA--EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE 208 (243)
Q Consensus 144 -~~~fD~I~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 208 (243)
...||+|+..-.. -...+++.+.+ |++.+++..++. .-.+++.. |. .+|++.+++.++
T Consensus 276 ~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvsC~p~--tlaRDl~~-L~-~~Y~l~~v~~~D 336 (353)
T TIGR02143 276 KSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYISCNPE--TLKANLEQ-LS-ETHRVERFALFD 336 (353)
T ss_pred ccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEEcCHH--HHHHHHHH-Hh-cCcEEEEEEEcc
Confidence 0238999996421 23455555544 678877766542 22334333 22 348888888877
No 152
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.22 E-value=5.4e-11 Score=95.37 Aligned_cols=119 Identities=18% Similarity=0.183 Sum_probs=77.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC--C-CCEEEEEccccccc-cCCcCCCCceEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ--L-LNVQIVRGRAETLG-KDVSFREQYDVAV 151 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~-~~v~~~~~d~~~~~-~~~~~~~~fD~I~ 151 (243)
+.+|||+|||+|..|+.++...+..+|+..|.++ .++.++.|++.++ . .++++..-|+.+-. .......+||+|+
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Il 124 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVIL 124 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEE
T ss_pred CceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEE
Confidence 7899999999999999999876678999999999 9999999999887 3 35888887775521 1101125799999
Q ss_pred EcC----cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHH
Q 026122 152 ARA----VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQL 196 (243)
Q Consensus 152 ~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~ 196 (243)
+.. ....+.+++.+.++++++|.+++....+ .....++.+.+++
T Consensus 125 asDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R-~~~~~~F~~~~~k 172 (173)
T PF10294_consen 125 ASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR-RKSEQEFFDRLKK 172 (173)
T ss_dssp EES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S--TGGCHHHHHH--
T ss_pred EecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe-cHHHHHHHHHhhh
Confidence 865 3457899999999999999866655433 2223445555543
No 153
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.21 E-value=1.9e-10 Score=93.47 Aligned_cols=105 Identities=21% Similarity=0.141 Sum_probs=78.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCC-CceEEEEc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFRE-QYDVAVAR 153 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~-~fD~I~~~ 153 (243)
+.+|||++||+|.+++.++.+ ...+|++||.++.+++.+++|++.+++. +++++++|+.+......... .||+|+..
T Consensus 50 g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 789999999999999888765 3458999999999999999999999986 59999999966421100012 47888885
Q ss_pred C---cccHHHHHHHH--ccCcccCeEEEEEeCC
Q 026122 154 A---VAEMRILAEYC--LPLVRVGGLFVAAKGH 181 (243)
Q Consensus 154 ~---~~~~~~~l~~~--~~~LkpgG~l~~~~~~ 181 (243)
. ......+++.+ ..+|+++|.+++.+..
T Consensus 129 PPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 129 PPFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred cCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 3 22345555544 3578999998887654
No 154
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.21 E-value=8.9e-12 Score=101.71 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=95.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
-.++||+|||||..+..+..+ ..+++|||+|++|++.|.+.- +- =.+.+++...+... ...++||+|++..
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg----~Y-D~L~~Aea~~Fl~~-~~~er~DLi~AaDV 197 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKG----LY-DTLYVAEAVLFLED-LTQERFDLIVAADV 197 (287)
T ss_pred cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhcc----ch-HHHHHHHHHHHhhh-ccCCcccchhhhhH
Confidence 369999999999998777655 368999999999999886642 11 13444454443321 1136899999976
Q ss_pred ---cccHHHHHHHHccCcccCeEEEEEeC--C-Cc------HHHH----HHHHHHHHHhCCeeeEEEEEecCCCC---Cc
Q 026122 155 ---VAEMRILAEYCLPLVRVGGLFVAAKG--H-DP------QEEV----KNSERAVQLMGASLLQLCSVESQSPF---GQ 215 (243)
Q Consensus 155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~--~-~~------~~~~----~~~~~~l~~~g~~~~~~~~~~~~~~~---~~ 215 (243)
...++.++-.+...|+|||.+.|+.- . +. .... .-+...+...|+.+++++........ -.
T Consensus 198 l~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv~ 277 (287)
T COG4976 198 LPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRDAGEPVP 277 (287)
T ss_pred HHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhhcCCCCC
Confidence 34789999999999999999998752 1 11 1111 11345677999999998876644322 25
Q ss_pred eEEEEEEee
Q 026122 216 RTAVVCLKS 224 (243)
Q Consensus 216 r~~v~~~k~ 224 (243)
-++++++|+
T Consensus 278 G~L~iark~ 286 (287)
T COG4976 278 GILVIARKK 286 (287)
T ss_pred CceEEEecC
Confidence 566666654
No 155
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.20 E-value=3.4e-10 Score=90.86 Aligned_cols=124 Identities=14% Similarity=0.090 Sum_probs=86.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
++++.+|||+|||.|.+...|... .++++.|||++++.+..+.+ . .+.++++|+++--.. -.+++||+|+.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~----r---Gv~Viq~Dld~gL~~-f~d~sFD~VIl 81 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA----R---GVSVIQGDLDEGLAD-FPDQSFDYVIL 81 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH----c---CCCEEECCHHHhHhh-CCCCCccEEeh
Confidence 356999999999999997677654 57999999999986654433 2 367999999873221 11378999998
Q ss_pred cC----cccHHHHHHHHccCcccCeEEEEEeCC-------------------------------CcHHHHHHHHHHHHHh
Q 026122 153 RA----VAEMRILAEYCLPLVRVGGLFVAAKGH-------------------------------DPQEEVKNSERAVQLM 197 (243)
Q Consensus 153 ~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~-------------------------------~~~~~~~~~~~~l~~~ 197 (243)
+. +..++.+++++.|+ |...++.-.. -.--.++++.+.+++.
T Consensus 82 sqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~ 158 (193)
T PF07021_consen 82 SQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCREL 158 (193)
T ss_pred HhHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHC
Confidence 64 45678888877555 4454443211 0112356788888899
Q ss_pred CCeeeEEEEEe
Q 026122 198 GASLLQLCSVE 208 (243)
Q Consensus 198 g~~~~~~~~~~ 208 (243)
|+.+++...+.
T Consensus 159 ~i~I~~~~~~~ 169 (193)
T PF07021_consen 159 GIRIEERVFLD 169 (193)
T ss_pred CCEEEEEEEEc
Confidence 99888765544
No 156
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.20 E-value=1.4e-10 Score=96.45 Aligned_cols=103 Identities=14% Similarity=0.005 Sum_probs=78.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH------------HHcCCCCEEEEEccccccccCCc
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAV------------SLTQLLNVQIVRGRAETLGKDVS 142 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~------------~~~~~~~v~~~~~d~~~~~~~~~ 142 (243)
++.+||+.|||.|..+..||.. +.+|+|+|+|+.+++.+.+.. ....-.+++++++|+.++.....
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 3689999999999999999865 689999999999998875421 01112358999999999864211
Q ss_pred CCCCceEEEEcC----c--ccHHHHHHHHccCcccCeEEEEEe
Q 026122 143 FREQYDVAVARA----V--AEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 143 ~~~~fD~I~~~~----~--~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
..++||+|+-++ + ....+..+.+.++|+|||.++++.
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 125799999764 2 246889999999999999987654
No 157
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.18 E-value=2.6e-10 Score=101.64 Aligned_cols=129 Identities=14% Similarity=0.164 Sum_probs=98.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccccCCc-CCCCceEEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVS-FREQYDVAVA 152 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~-~~~~fD~I~~ 152 (243)
|++|||+.|=||..++..|.. ++.+||+||.|..+++.|++|.+.+|+. .+.++++|+.++..... ...+||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 899999999999999877744 3449999999999999999999999985 38999999987643211 1248999999
Q ss_pred cC-------------cccHHHHHHHHccCcccCeEEEEEeCCCc--HHHH-HHHHHHHHHhCCeeeEEE
Q 026122 153 RA-------------VAEMRILAEYCLPLVRVGGLFVAAKGHDP--QEEV-KNSERAVQLMGASLLQLC 205 (243)
Q Consensus 153 ~~-------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~-~~~~~~l~~~g~~~~~~~ 205 (243)
.. ..++..++..+.++|+|||.+++.++... .+.+ ..+.+.....|.....+.
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~~ 365 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEIE 365 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEee
Confidence 52 23688999999999999999998885432 3332 334455556665555443
No 158
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.18 E-value=4.4e-10 Score=97.76 Aligned_cols=138 Identities=14% Similarity=0.070 Sum_probs=107.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc-cccccccCCcCCCCceEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~fD~I~ 151 (243)
..+|..|||=-||||.+.+..... +++++|+|++..|++-++.|.+..++.+..+... |+..++... .++|.|+
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~---~~vdaIa 269 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRD---NSVDAIA 269 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCC---CccceEE
Confidence 456889999999999987666644 7899999999999999999999999888777776 999988542 4699999
Q ss_pred EcC---------ccc----HHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEE
Q 026122 152 ARA---------VAE----MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTA 218 (243)
Q Consensus 152 ~~~---------~~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~ 218 (243)
+.. ... +.++++.+.+.|++||++++...... ...+...||.++...... ......|.+
T Consensus 270 tDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~-------~~~~~~~~f~v~~~~~~~-~H~sLtR~i 341 (347)
T COG1041 270 TDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDP-------RHELEELGFKVLGRFTMR-VHGSLTRVI 341 (347)
T ss_pred ecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcc-------hhhHhhcCceEEEEEEEe-ecCceEEEE
Confidence 952 111 68899999999999999998776322 233457899888776544 344556777
Q ss_pred EEEEe
Q 026122 219 VVCLK 223 (243)
Q Consensus 219 v~~~k 223 (243)
.++++
T Consensus 342 ~v~~~ 346 (347)
T COG1041 342 YVVRK 346 (347)
T ss_pred EEEec
Confidence 77665
No 159
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.18 E-value=1.4e-10 Score=93.69 Aligned_cols=124 Identities=15% Similarity=0.220 Sum_probs=88.0
Q ss_pred HHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC
Q 026122 44 NEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ 123 (243)
Q Consensus 44 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 123 (243)
.+..++.+++.+... .++ +.+|||+.||||.+|+... .+++.+|+.||.|++++..+++|++.++
T Consensus 25 ~drvrealFniL~~~-~~~-------------g~~vLDLFaGSGalGlEAL-SRGA~~v~fVE~~~~a~~~i~~N~~~l~ 89 (183)
T PF03602_consen 25 TDRVREALFNILQPR-NLE-------------GARVLDLFAGSGALGLEAL-SRGAKSVVFVEKNRKAIKIIKKNLEKLG 89 (183)
T ss_dssp SHHHHHHHHHHHHCH--HT-------------T-EEEETT-TTSHHHHHHH-HTT-SEEEEEES-HHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhccc-ccC-------------CCeEEEcCCccCccHHHHH-hcCCCeEEEEECCHHHHHHHHHHHHHhC
Confidence 456677777766543 122 8899999999999997644 5567899999999999999999999999
Q ss_pred CCC-EEEEEccccccccCC-cCCCCceEEEEcC---ccc-HHHHHHHHc--cCcccCeEEEEEeCCC
Q 026122 124 LLN-VQIVRGRAETLGKDV-SFREQYDVAVARA---VAE-MRILAEYCL--PLVRVGGLFVAAKGHD 182 (243)
Q Consensus 124 ~~~-v~~~~~d~~~~~~~~-~~~~~fD~I~~~~---~~~-~~~~l~~~~--~~LkpgG~l~~~~~~~ 182 (243)
..+ ++++++|........ ....+||+|++.. ... +..+++.+. .+|+++|.+++.+...
T Consensus 90 ~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 90 LEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp -GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 875 999999965533210 1136899999974 223 477788776 8999999999988543
No 160
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.18 E-value=8.7e-10 Score=90.83 Aligned_cols=99 Identities=13% Similarity=0.178 Sum_probs=75.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CC-------------------------
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-----LL------------------------- 125 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~------------------------- 125 (243)
+..+|||||-+|.+++.+|+.+....|+|+||++..+..|+++++... +.
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 778999999999999999999987899999999999999999876421 11
Q ss_pred -----CEEEE-------EccccccccCCcCCCCceEEEEcC----------cccHHHHHHHHccCcccCeEEEEEe
Q 026122 126 -----NVQIV-------RGRAETLGKDVSFREQYDVAVARA----------VAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 126 -----~v~~~-------~~d~~~~~~~~~~~~~fD~I~~~~----------~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
|+.+. ..|+.++ ....||+|+|-. ...+..++..+.++|.|||+|+++-
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl~~-----~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFLDM-----IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred ccCCcchhcccccEEEecchhhhh-----ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 11111 1122211 125799999843 2358999999999999999988754
No 161
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.18 E-value=2.1e-10 Score=98.42 Aligned_cols=132 Identities=12% Similarity=0.133 Sum_probs=89.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccccCCcCCCCceEEEE
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
.+++|||+-|=||..++..+. .++.+|++||.|..+++.+++|++.++++ ++++++.|+.+........++||+||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 488999999999999977663 34568999999999999999999999974 599999999874321111268999999
Q ss_pred cC----------cccHHHHHHHHccCcccCeEEEEEeCC-CcHHHHHHHHHHHHHhCCeeeEEEEEec
Q 026122 153 RA----------VAEMRILAEYCLPLVRVGGLFVAAKGH-DPQEEVKNSERAVQLMGASLLQLCSVES 209 (243)
Q Consensus 153 ~~----------~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 209 (243)
.. ..++..++..+.++|+|||.+++..+. .... ..+.+.+.+.+-++..++++..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~--~~l~~~~~~~a~~~~~~~~~~~ 267 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISP--DFLLEAVAEAAREVEFIERLGQ 267 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-H--HHHHHHHHHHHHHCEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCH--HHHHHHHHHhCccceEeeeecc
Confidence 53 225788999999999999998877643 2222 2234444444434444444443
No 162
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.17 E-value=4e-10 Score=93.50 Aligned_cols=130 Identities=17% Similarity=0.093 Sum_probs=89.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCCEEEEEccccccccCCc
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL------------TQLLNVQIVRGRAETLGKDVS 142 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~v~~~~~d~~~~~~~~~ 142 (243)
++.+||..|||.|.-...||.. +.+|+|+|+|+.+++.+.+.... ....+|+++++|+.++....
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~- 113 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED- 113 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC-
T ss_pred CCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh-
Confidence 3679999999999999899965 68999999999999887332211 01235799999999987542
Q ss_pred CCCCceEEEEcC------cccHHHHHHHHccCcccCeEEE--EEe-------CCCcHHHHHHHHHHHHHhCCeeeEEEEE
Q 026122 143 FREQYDVAVARA------VAEMRILAEYCLPLVRVGGLFV--AAK-------GHDPQEEVKNSERAVQLMGASLLQLCSV 207 (243)
Q Consensus 143 ~~~~fD~I~~~~------~~~~~~~l~~~~~~LkpgG~l~--~~~-------~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 207 (243)
.++||+|+=++ .....+..+.+.++|+|||.++ ... |+-..-...++.+.+. .+|++..++..
T Consensus 114 -~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~~ 191 (218)
T PF05724_consen 114 -VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEEE 191 (218)
T ss_dssp -HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEEE
T ss_pred -cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEecc
Confidence 25799999864 2357999999999999999933 322 1111223345555555 67888777764
Q ss_pred ec
Q 026122 208 ES 209 (243)
Q Consensus 208 ~~ 209 (243)
+.
T Consensus 192 ~~ 193 (218)
T PF05724_consen 192 DS 193 (218)
T ss_dssp E-
T ss_pred cc
Confidence 43
No 163
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.17 E-value=2.3e-10 Score=104.30 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=74.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHC----CCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC----PDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVA 150 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I 150 (243)
+..|+|||||+|.++...+++. ...+|+|||.|+.++..+++.++.+++. +|+++++|++++..+ .++|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp----ekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP----EKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS----S-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC----CceeEE
Confidence 4679999999999975554432 3579999999999998888887888885 599999999998764 689999
Q ss_pred EEcCc------ccHHHHHHHHccCcccCeEEE
Q 026122 151 VARAV------AEMRILAEYCLPLVRVGGLFV 176 (243)
Q Consensus 151 ~~~~~------~~~~~~l~~~~~~LkpgG~l~ 176 (243)
+|.-+ .-..+.+..+.+.|||||+++
T Consensus 263 VSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 263 VSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 99532 124567888999999999977
No 164
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.17 E-value=7.5e-11 Score=97.04 Aligned_cols=102 Identities=15% Similarity=0.190 Sum_probs=77.0
Q ss_pred CeEEEEcCCCChHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc-CCcCCCCceEEEEc
Q 026122 77 LKLVDVGTGAGLPGLVLAIACPD--WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK-DVSFREQYDVAVAR 153 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~fD~I~~~ 153 (243)
.+||+||||.|.....+.+-.++ .+|.++|.|+.+++..+++..... .++.....|+..-.. .+...+++|+|++.
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEE
Confidence 38999999999988888877766 899999999999999988876544 234445555544221 11224789998873
Q ss_pred ----Cc--ccHHHHHHHHccCcccCeEEEEEe
Q 026122 154 ----AV--AEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 154 ----~~--~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
++ ......++.+.++|||||.+++..
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 33 257889999999999999999864
No 165
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.17 E-value=7.4e-10 Score=101.40 Aligned_cols=125 Identities=18% Similarity=0.171 Sum_probs=97.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEE
Q 026122 72 SCNSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA 150 (243)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I 150 (243)
..+++.+|||+|||+|.-+..+|.... ...|+++|+++..++.+++++++.|+.|+.+.+.|...+... ..+.||.|
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~--~~~~fD~I 187 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA--LPETFDAI 187 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh--chhhcCeE
Confidence 346789999999999999989887653 469999999999999999999999999999999998876432 13679999
Q ss_pred EEcCcc--------------------------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHH-HHHHHhC
Q 026122 151 VARAVA--------------------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE-RAVQLMG 198 (243)
Q Consensus 151 ~~~~~~--------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~l~~~g 198 (243)
+..+.. -..++++.+.+.|||||+++...+.-..+|-++.. ..+++++
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~ 262 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYP 262 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence 974310 13778899999999999998877665555544443 3344553
No 166
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.16 E-value=2.5e-10 Score=95.03 Aligned_cols=104 Identities=13% Similarity=0.064 Sum_probs=88.9
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCcc
Q 026122 77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVA 156 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~ 156 (243)
..+||||||.|...+.+|+..|+..++|||+....+..+.+.+.+.+++|+.+++.|+.++......+++.|-|+.+-..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 47999999999999999999999999999999999999999999999988999999998864332223589999885311
Q ss_pred ------------cHHHHHHHHccCcccCeEEEEEeC
Q 026122 157 ------------EMRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 157 ------------~~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
....+++.+.+.|+|||.+.+-+.
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 258899999999999999998665
No 167
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.9e-10 Score=87.64 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=63.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
|++++|+|||+|.+++..+ ....-.|+|+|+++++++.+++|++...++ +.++++|+.+..... +.||.++.|.
T Consensus 49 gkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdildle~~~---g~fDtaviNp 122 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILDLELKG---GIFDTAVINP 122 (185)
T ss_pred CcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhhh-hheeeeeccchhccC---CeEeeEEecC
Confidence 8899999999999985555 334568999999999999999999998884 799999999987643 7799999974
No 168
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=2.6e-09 Score=84.49 Aligned_cols=121 Identities=14% Similarity=0.109 Sum_probs=94.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
..-++|||||+|..+-.+++.. |.....++|+|+++++...+.++.++.. ++.++.|+.+-... ++.|+++.|-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-~~~V~tdl~~~l~~----~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-IDVVRTDLLSGLRN----ESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-cceeehhHHhhhcc----CCccEEEECC
Confidence 5679999999999998888765 5678999999999999999999988874 88999998875442 7899999972
Q ss_pred ------------------c-------ccHHHHHHHHccCcccCeEEEEEeC-CCcHHHHHHHHHHHHHhCCeeeEE
Q 026122 155 ------------------V-------AEMRILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGASLLQL 204 (243)
Q Consensus 155 ------------------~-------~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~l~~~g~~~~~~ 204 (243)
+ .-...++..+..+|.|.|.+++..- .+..+++ .+.++..|+.....
T Consensus 119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei---~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEI---LKILEKKGYGVRIA 191 (209)
T ss_pred CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHH---HHHHhhcccceeEE
Confidence 0 0157778888889999999998763 3444444 44566888865543
No 169
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.13 E-value=2.2e-09 Score=93.92 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=99.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEE
Q 026122 72 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVA 150 (243)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I 150 (243)
...+|.+|+|.-||-|.+++.+|... ..+|+++|+|+.+++++++|++.|++.+ ++.+++|..++.... +.+|-|
T Consensus 185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~---~~aDrI 260 (341)
T COG2520 185 LVKEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL---GVADRI 260 (341)
T ss_pred hhcCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc---ccCCEE
Confidence 34459999999999999999999763 4459999999999999999999999987 999999999987653 679999
Q ss_pred EEcCcccHHHHHHHHccCcccCeEEEEEeCCCcHH----HHHHHHHHHHHhCC
Q 026122 151 VARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQE----EVKNSERAVQLMGA 199 (243)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~~l~~~g~ 199 (243)
+++....-..++..+.+.+++||.+-+..-..... ....+.......|.
T Consensus 261 im~~p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~ 313 (341)
T COG2520 261 IMGLPKSAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGY 313 (341)
T ss_pred EeCCCCcchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccC
Confidence 99988777888999999999999987766322222 23444454455554
No 170
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.11 E-value=1.3e-09 Score=88.64 Aligned_cols=129 Identities=14% Similarity=0.109 Sum_probs=93.4
Q ss_pred eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEccccccccCCc-----CCCCceEEE
Q 026122 78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVS-----FREQYDVAV 151 (243)
Q Consensus 78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~-----~~~~fD~I~ 151 (243)
+|||||||||..+..+|..+|..+-.-.|.++......+..+...+++|+ ..+.-|+.+-.-... ..++||+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 59999999999999999999999999999999988777887888787763 344455554311110 135899999
Q ss_pred EcC------cccHHHHHHHHccCcccCeEEEEEeCC-----Cc-------------------HHHHHHHHHHHHHhCCee
Q 026122 152 ARA------VAEMRILAEYCLPLVRVGGLFVAAKGH-----DP-------------------QEEVKNSERAVQLMGASL 201 (243)
Q Consensus 152 ~~~------~~~~~~~l~~~~~~LkpgG~l~~~~~~-----~~-------------------~~~~~~~~~~l~~~g~~~ 201 (243)
+.+ ....+.+++.+.++|++||.|+++-.. .+ -.++.++.+.....|+..
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l 187 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLEL 187 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCcc
Confidence 854 335688999999999999998875321 11 112344556666888877
Q ss_pred eEEEE
Q 026122 202 LQLCS 206 (243)
Q Consensus 202 ~~~~~ 206 (243)
.++..
T Consensus 188 ~~~~~ 192 (204)
T PF06080_consen 188 EEDID 192 (204)
T ss_pred Ccccc
Confidence 76543
No 171
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.08 E-value=9.4e-11 Score=96.49 Aligned_cols=98 Identities=16% Similarity=0.087 Sum_probs=71.0
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
..++|+|||+|.-++.+|..+ .+|+|+|+|+.|++.+++.-...-. ........+..++... +++.|+|++..
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~---e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG---EESVDLITAAQA 109 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC---Ccceeeehhhhh
Confidence 379999999998777777664 4899999999999988765432222 1244444555555433 38999999853
Q ss_pred --cccHHHHHHHHccCcccCeEEEEEe
Q 026122 155 --VAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 155 --~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+-+++++.+.+.++||+.|.++..-
T Consensus 110 ~HWFdle~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 110 VHWFDLERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred HHhhchHHHHHHHHHHcCCCCCEEEEE
Confidence 3488999999999999877444433
No 172
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.07 E-value=6.5e-09 Score=83.38 Aligned_cols=124 Identities=19% Similarity=0.234 Sum_probs=90.0
Q ss_pred HHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC
Q 026122 44 NEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ 123 (243)
Q Consensus 44 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 123 (243)
.+..++.+++.+... .++ +.++||+-+|||.+++... .+++.+++.||.|.+++..+++|++.++
T Consensus 26 ~drVREalFNil~~~-~i~-------------g~~~LDlFAGSGaLGlEAl-SRGA~~~~~vE~~~~a~~~l~~N~~~l~ 90 (187)
T COG0742 26 TDRVREALFNILAPD-EIE-------------GARVLDLFAGSGALGLEAL-SRGAARVVFVEKDRKAVKILKENLKALG 90 (187)
T ss_pred chHHHHHHHHhcccc-ccC-------------CCEEEEecCCccHhHHHHH-hCCCceEEEEecCHHHHHHHHHHHHHhC
Confidence 455566666665432 233 8999999999999997655 5567899999999999999999999999
Q ss_pred CC-CEEEEEccccccccCCcCCCCceEEEEcC-----cccHHHHHHH--HccCcccCeEEEEEeCCC
Q 026122 124 LL-NVQIVRGRAETLGKDVSFREQYDVAVARA-----VAEMRILAEY--CLPLVRVGGLFVAAKGHD 182 (243)
Q Consensus 124 ~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-----~~~~~~~l~~--~~~~LkpgG~l~~~~~~~ 182 (243)
+. +++++..|...+.......++||+|+... ..+....+.. -..+|+|+|.+++.....
T Consensus 91 ~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 91 LEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 64 58999999885532221123599999963 2222222222 457899999999988754
No 173
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.05 E-value=2.9e-09 Score=85.79 Aligned_cols=123 Identities=12% Similarity=0.058 Sum_probs=86.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCE---------EEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcC
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPDWK---------VTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSF 143 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~---------v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~ 143 (243)
+++..|||--||+|.+.+..|....+.. ++|+|+++++++.+++|++..++.+ +.+.+.|+.+++..
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~--- 103 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLP--- 103 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGT---
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccc---
Confidence 3478999999999999988887766655 9999999999999999999999865 99999999999843
Q ss_pred CCCceEEEEcCc------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122 144 REQYDVAVARAV------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS 206 (243)
Q Consensus 144 ~~~fD~I~~~~~------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 206 (243)
.+++|.|+++.. .-+..+++.+.+++++ ..+++..+... + .+.+...++......+
T Consensus 104 ~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~---~---~~~~~~~~~~~~~~~~ 171 (179)
T PF01170_consen 104 DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNRE---L---EKALGLKGWRKRKLYN 171 (179)
T ss_dssp TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCC---H---HHHHTSTTSEEEEEEE
T ss_pred cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHH---H---HHHhcchhhceEEEEE
Confidence 268999999730 1256788899999999 44444444322 2 2333355665554443
No 174
>PLN02823 spermine synthase
Probab=99.05 E-value=9.4e-09 Score=90.47 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=98.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCEEEEEccccccccCCcCCCCceEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ----LLNVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
..+||.||+|.|..+..+.+..+..+|+.||++++.++.+++.....+ -++++++.+|...+... ..++||+|+
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~--~~~~yDvIi 181 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK--RDEKFDVII 181 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh--CCCCccEEE
Confidence 679999999999988777765556799999999999999999875432 24699999999886432 136899999
Q ss_pred EcCccc----------HHHHHH-HHccCcccCeEEEEEeCCC----cHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCce
Q 026122 152 ARAVAE----------MRILAE-YCLPLVRVGGLFVAAKGHD----PQEEVKNSERAVQLMGASLLQLCSVESQSPFGQR 216 (243)
Q Consensus 152 ~~~~~~----------~~~~l~-~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r 216 (243)
+..... -.++++ .+++.|+|||.+++..+.. ..+....+.+.++.. |..+.......|.-...-
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~v-F~~v~~y~~~vPsf~~~w 260 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQV-FKYVVPYTAHVPSFADTW 260 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHh-CCCEEEEEeecCCCCCce
Confidence 964210 256787 8999999999987755431 233344445555443 444444444444433334
Q ss_pred EEEEEEe
Q 026122 217 TAVVCLK 223 (243)
Q Consensus 217 ~~v~~~k 223 (243)
..+++.+
T Consensus 261 ~f~~aS~ 267 (336)
T PLN02823 261 GWVMASD 267 (336)
T ss_pred EEEEEeC
Confidence 4445444
No 175
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.04 E-value=1.6e-09 Score=92.25 Aligned_cols=70 Identities=23% Similarity=0.244 Sum_probs=60.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
+.+|||||||+|.++..+++. +.+|+++|+++.+++.++++... ..+++++++|+.+++. ..||.|++|-
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~-----~~~d~Vv~Nl 99 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL-----PEFNKVVSNL 99 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc-----hhceEEEEcC
Confidence 789999999999999999876 46999999999999999887754 3579999999988753 3589999984
No 176
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=8e-09 Score=93.70 Aligned_cols=128 Identities=16% Similarity=0.108 Sum_probs=96.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
++.+|||+-||.|.+++.+|.. ..+|+|+|+++++++.|++|++.+++.|+++..++.+++.........+|.|+..-
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP 370 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP 370 (432)
T ss_pred CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC
Confidence 3679999999999999999944 57999999999999999999999999999999999999876431124789999964
Q ss_pred cc-cH-HHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122 155 VA-EM-RILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE 208 (243)
Q Consensus 155 ~~-~~-~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 208 (243)
.. .. +.+++.+.+ ++|..+++++.++. .+..=...|...|+.+.++..++
T Consensus 371 PR~G~~~~~lk~l~~-~~p~~IvYVSCNP~---TlaRDl~~L~~~gy~i~~v~~~D 422 (432)
T COG2265 371 PRAGADREVLKQLAK-LKPKRIVYVSCNPA---TLARDLAILASTGYEIERVQPFD 422 (432)
T ss_pred CCCCCCHHHHHHHHh-cCCCcEEEEeCCHH---HHHHHHHHHHhCCeEEEEEEEec
Confidence 21 12 355554443 46766777765543 33333455678898888877766
No 177
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.02 E-value=2.8e-09 Score=89.72 Aligned_cols=93 Identities=22% Similarity=0.240 Sum_probs=74.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
++..+|+|||+|+|..+..+++.+|+.+++..|. ++.++.+++ .++++++.+|+.+ .. +. +|+++.+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~--~~---P~-~D~~~l~ 165 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD--PL---PV-ADVYLLR 165 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT--CC---SS-ESEEEEE
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHh--hh---cc-ccceeee
Confidence 3367899999999999999999999999999999 777777766 4579999999983 22 25 9999986
Q ss_pred Cc------ccHHHHHHHHccCcccC--eEEEEEe
Q 026122 154 AV------AEMRILAEYCLPLVRVG--GLFVAAK 179 (243)
Q Consensus 154 ~~------~~~~~~l~~~~~~Lkpg--G~l~~~~ 179 (243)
.+ .+...+++.+++.|+|| |+|++..
T Consensus 166 ~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 166 HVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp SSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 52 24688999999999999 9999876
No 178
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=8.8e-09 Score=91.54 Aligned_cols=130 Identities=19% Similarity=0.150 Sum_probs=97.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIACPD--WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA 150 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I 150 (243)
.+++.+|||+++++|.=+..+|+...+ ..|+++|.++..+...+++++++|+.|+.+++.|...+.......++||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 456899999999999998888877643 567999999999999999999999999889998877654322111359999
Q ss_pred EEcCc--------------------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHH-HHHHHh-CCeee
Q 026122 151 VARAV--------------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE-RAVQLM-GASLL 202 (243)
Q Consensus 151 ~~~~~--------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~l~~~-g~~~~ 202 (243)
+..+. .-..++++.+.+.|||||.|+...+.-..+|-++.. ..+++. ++..+
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~ 313 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHPDFELE 313 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCCCceee
Confidence 98520 015789999999999999999888765545444333 344454 44443
No 179
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=99.01 E-value=3.3e-09 Score=88.45 Aligned_cols=120 Identities=11% Similarity=-0.024 Sum_probs=73.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHH--HcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVF-LEHAVS--LTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~-a~~~~~--~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
+.+|||+|||||.++..+++. +..+|+|||+++.++.. .+++.+ ..+..|++ ..+.+++... . ..+|++++
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~--~~~~~~~~~d--~-~~~Dvsfi 149 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIR--YVTPADIFPD--F-ATFDVSFI 149 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc--cCCHhHcCCC--c-eeeeEEEe
Confidence 779999999999999988875 56799999999987764 333222 12223333 2233333211 1 36787776
Q ss_pred cCcccHHHHHHHHccCcccCeEEEEEeCCC-------------------cHHHHHHHHHHHHHhCCeeeEEEE
Q 026122 153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHD-------------------PQEEVKNSERAVQLMGASLLQLCS 206 (243)
Q Consensus 153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------------------~~~~~~~~~~~l~~~g~~~~~~~~ 206 (243)
. +..++..+.+.|++ |.+++..-++ ....+.++...+...||.+.....
T Consensus 150 S----~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T TIGR00478 150 S----LISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKIIF 217 (228)
T ss_pred e----hHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEEE
Confidence 3 33356777788888 7766443211 112234455556677887766543
No 180
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.00 E-value=6.8e-09 Score=92.22 Aligned_cols=137 Identities=18% Similarity=0.182 Sum_probs=83.2
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------------cC
Q 026122 77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------------SF 143 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------------~~ 143 (243)
.+|||+-||+|.+++.+|.. ..+|+|||+++.+++.|++|++.++++|+++++++.+++.... ..
T Consensus 198 ~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~ 275 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK 275 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred CcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence 38999999999999999865 4699999999999999999999999999999998876642210 00
Q ss_pred CCCceEEEEcC---cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe-cCCCCCceEEE
Q 026122 144 REQYDVAVARA---VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE-SQSPFGQRTAV 219 (243)
Q Consensus 144 ~~~fD~I~~~~---~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~~~~~r~~v 219 (243)
...+|+|+... ..+ +.+++.+.+ +. +++.++ .++..-.+++.. |.+ |+++.++..++ +|....--.++
T Consensus 276 ~~~~d~vilDPPR~G~~-~~~~~~~~~---~~-~ivYvS-CnP~tlaRDl~~-L~~-~y~~~~v~~~DmFP~T~HvE~v~ 347 (352)
T PF05958_consen 276 SFKFDAVILDPPRAGLD-EKVIELIKK---LK-RIVYVS-CNPATLARDLKI-LKE-GYKLEKVQPVDMFPQTHHVETVA 347 (352)
T ss_dssp CTTESEEEE---TT-SC-HHHHHHHHH---SS-EEEEEE-S-HHHHHHHHHH-HHC-CEEEEEEEEE-SSTTSS--EEEE
T ss_pred hcCCCEEEEcCCCCCch-HHHHHHHhc---CC-eEEEEE-CCHHHHHHHHHH-Hhh-cCEEEEEEEeecCCCCCcEEEEE
Confidence 12589999853 111 334444432 23 433333 233334455443 443 99999998888 44444334455
Q ss_pred EEEe
Q 026122 220 VCLK 223 (243)
Q Consensus 220 ~~~k 223 (243)
+++|
T Consensus 348 lL~r 351 (352)
T PF05958_consen 348 LLER 351 (352)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
No 181
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.00 E-value=2.2e-09 Score=95.80 Aligned_cols=100 Identities=11% Similarity=0.136 Sum_probs=87.0
Q ss_pred CeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122 77 LKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 155 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 155 (243)
.+|||+.||+|..++.++...+ ..+|+++|+|+++++.+++|++.+++.+++++++|+..+.... ..+||+|.....
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~--~~~fDvIdlDPf 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR--NRKFHVIDIDPF 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh--CCCCCEEEeCCC
Confidence 5899999999999999997643 3689999999999999999999999888999999998764321 257999999877
Q ss_pred ccHHHHHHHHccCcccCeEEEEE
Q 026122 156 AEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 156 ~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
.....+++.+.+.+++||.+++.
T Consensus 124 Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CCcHHHHHHHHHhcccCCEEEEE
Confidence 66678999999999999999987
No 182
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.99 E-value=2.9e-09 Score=92.22 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=62.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-LLNVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
++.+|||||||+|.++..++.. +.+|+++|+|+.+++.++++....+ ..+++++++|+.+... ..||.|++|
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-----~~~d~VvaN 108 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-----PYFDVCVAN 108 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-----cccCEEEec
Confidence 3789999999999999888865 4689999999999999999988776 3579999999988643 468999997
Q ss_pred C
Q 026122 154 A 154 (243)
Q Consensus 154 ~ 154 (243)
.
T Consensus 109 l 109 (294)
T PTZ00338 109 V 109 (294)
T ss_pred C
Confidence 4
No 183
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.99 E-value=6.3e-09 Score=84.49 Aligned_cols=126 Identities=18% Similarity=0.153 Sum_probs=79.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
++...|.|+|||-+.++..+. ...+|...|+-.. |-.+..+|+...|..+ ++.|+++..
T Consensus 71 ~~~~viaD~GCGdA~la~~~~---~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~---~svDv~Vfc 129 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVP---NKHKVHSFDLVAP---------------NPRVTACDIANVPLED---ESVDVAVFC 129 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH-----S---EEEEESS-S---------------STTEEES-TTS-S--T---T-EEEEEEE
T ss_pred CCCEEEEECCCchHHHHHhcc---cCceEEEeeccCC---------------CCCEEEecCccCcCCC---CceeEEEEE
Confidence 336799999999998763322 2458999998652 2247779999988764 789988863
Q ss_pred -C--cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEeeC
Q 026122 154 -A--VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSR 225 (243)
Q Consensus 154 -~--~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~~ 225 (243)
+ ..++..+++++.|+|||||.|.+.+-...-..+..+.+.++..||...... ..+..-.++-.+|..
T Consensus 130 LSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d-----~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 130 LSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD-----ESNKHFVLFEFKKIR 199 (219)
T ss_dssp S---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE-------STTEEEEEEEE-S
T ss_pred hhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc-----cCCCeEEEEEEEEcC
Confidence 2 458999999999999999999998855555577888999999999887642 123345555555654
No 184
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.98 E-value=1.9e-09 Score=88.20 Aligned_cols=126 Identities=13% Similarity=0.107 Sum_probs=86.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
..+.||.|||-|+++-.+.... --+|..||.+++.++.|++........-.++++..++++.+.. .+||+|++.-
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~---~~YDlIW~QW~ 131 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEE---GKYDLIWIQWC 131 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----T---T-EEEEEEES-
T ss_pred cceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCC---CcEeEEEehHh
Confidence 5689999999999986554332 3589999999999998887544322222789999999987653 6899999953
Q ss_pred -----cccHHHHHHHHccCcccCeEEEEEeCCCc-------------HHHHHHHHHHHHHhCCeeeEEE
Q 026122 155 -----VAEMRILAEYCLPLVRVGGLFVAAKGHDP-------------QEEVKNSERAVQLMGASLLQLC 205 (243)
Q Consensus 155 -----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------------~~~~~~~~~~l~~~g~~~~~~~ 205 (243)
..++..+++.|+..|+|+|.+++-++... ......+++.++++|+.++..+
T Consensus 132 lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 132 LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 34789999999999999999887542110 1124567888889999988754
No 185
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.96 E-value=5.2e-09 Score=82.77 Aligned_cols=74 Identities=14% Similarity=0.084 Sum_probs=61.4
Q ss_pred EEEeCCHHHHHHHHHHHHHcC---CCCEEEEEccccccccCCcCCCCceEEEEcC----cccHHHHHHHHccCcccCeEE
Q 026122 103 TLLESMNKRCVFLEHAVSLTQ---LLNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEYCLPLVRVGGLF 175 (243)
Q Consensus 103 ~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~----~~~~~~~l~~~~~~LkpgG~l 175 (243)
+|+|+|++|++.|++..+..+ ..+++++++|+++++..+ ++||+|++.. +.+...+++++.++|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~---~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDD---CEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCC---CCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 589999999999987765322 346999999999987643 6899999863 557899999999999999999
Q ss_pred EEEe
Q 026122 176 VAAK 179 (243)
Q Consensus 176 ~~~~ 179 (243)
++..
T Consensus 78 ~i~d 81 (160)
T PLN02232 78 SILD 81 (160)
T ss_pred EEEE
Confidence 8765
No 186
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.94 E-value=2.7e-09 Score=91.57 Aligned_cols=72 Identities=22% Similarity=0.153 Sum_probs=58.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
++.+|||||||+|.++..++... .+|+|+|+|+++++.++++... .+++++++|+.+++... -.+|.|++|-
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~---~~~~~vv~Nl 113 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSE---LQPLKVVANL 113 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHH---cCcceEEEeC
Confidence 37899999999999999999874 3999999999999999876642 57999999999875421 1158888874
No 187
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.94 E-value=1.8e-08 Score=84.35 Aligned_cols=122 Identities=17% Similarity=0.130 Sum_probs=87.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 155 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 155 (243)
..++||||+|.|.++..++..+. +|++.|.|+.|.... ++.|. +++ +..++... +.+||+|.|-++
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL----~~kg~---~vl--~~~~w~~~---~~~fDvIscLNv 160 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRL----SKKGF---TVL--DIDDWQQT---DFKFDVISCLNV 160 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHH----HhCCC---eEE--ehhhhhcc---CCceEEEeehhh
Confidence 56899999999999999987763 799999999875443 33343 333 22223222 258999999764
Q ss_pred c----cHHHHHHHHccCcccCeEEEEE----------eCC--C-------------cHHHHHHHHHHHHHhCCeeeEEEE
Q 026122 156 A----EMRILAEYCLPLVRVGGLFVAA----------KGH--D-------------PQEEVKNSERAVQLMGASLLQLCS 206 (243)
Q Consensus 156 ~----~~~~~l~~~~~~LkpgG~l~~~----------~~~--~-------------~~~~~~~~~~~l~~~g~~~~~~~~ 206 (243)
. .+..+++.+++.|+|+|++++- .+. + ..+++..+.+.++-+||+++...+
T Consensus 161 LDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 161 LDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred hhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4 5789999999999999998842 122 1 133455566778899999998877
Q ss_pred EecCC
Q 026122 207 VESQS 211 (243)
Q Consensus 207 ~~~~~ 211 (243)
..+-+
T Consensus 241 ~PYLc 245 (265)
T PF05219_consen 241 LPYLC 245 (265)
T ss_pred cCccc
Confidence 66543
No 188
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.93 E-value=1.2e-08 Score=94.74 Aligned_cols=123 Identities=12% Similarity=0.017 Sum_probs=94.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 155 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 155 (243)
+..+||||||.|...+.+|..+|+..++|+|++...+..+.+.+...++.|+.+++.|+..+... -.++++|.|+.+-.
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~-~~~~sv~~i~i~FP 426 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILND-LPNNSLDGIYILFP 426 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHh-cCcccccEEEEECC
Confidence 56799999999999999999999999999999999999888888888999999998887644321 11267999998631
Q ss_pred c------------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhC-Cee
Q 026122 156 A------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMG-ASL 201 (243)
Q Consensus 156 ~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g-~~~ 201 (243)
. --..+++.+.+.|+|||.+.+.+.. .+-...+.+.+...+ |..
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~--~~y~~~~~~~~~~~~~f~~ 483 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI--ENYFYEAIELIQQNGNFEI 483 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC--HHHHHHHHHHHHhCCCeEe
Confidence 1 1378999999999999998886543 333334455555655 543
No 189
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=7.5e-09 Score=83.66 Aligned_cols=104 Identities=20% Similarity=0.252 Sum_probs=80.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcC--------C--CCEEEEEccccccccC
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQ--------L--LNVQIVRGRAETLGKD 140 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~--------~--~~v~~~~~d~~~~~~~ 140 (243)
+.++.+.||+|+|||.++..+++.. ++..++|||.-++.++.+++++++.- + .++.++.+|.......
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 3459999999999999998888654 33445999999999999999987643 2 2478999999887654
Q ss_pred CcCCCCceEEEEcCcccHHHHHHHHccCcccCeEEEEEeCC
Q 026122 141 VSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGH 181 (243)
Q Consensus 141 ~~~~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (243)
. .+||.|.+.+.. .++.+.+...|++||++++..+.
T Consensus 160 ~---a~YDaIhvGAaa--~~~pq~l~dqL~~gGrllip~~~ 195 (237)
T KOG1661|consen 160 Q---APYDAIHVGAAA--SELPQELLDQLKPGGRLLIPVGQ 195 (237)
T ss_pred c---CCcceEEEccCc--cccHHHHHHhhccCCeEEEeecc
Confidence 3 789999998533 33345555689999999987764
No 190
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.90 E-value=4e-08 Score=84.35 Aligned_cols=142 Identities=17% Similarity=0.168 Sum_probs=106.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCEEEEEccccccccCCcCCCCceEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ----LLNVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
.++||-||-|.|..+..+.+..+-.+++.||+++..++.+++...... .++++++.+|..++.... ..+||+|+
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~--~~~fDvIi 154 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC--EEKFDVII 154 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC--CCcCCEEE
Confidence 469999999999999888877667899999999999999999876544 356999999998876532 25799999
Q ss_pred EcCccc--------HHHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEE
Q 026122 152 ARAVAE--------MRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVV 220 (243)
Q Consensus 152 ~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~ 220 (243)
+..... -.++++.+++.|+++|.++.-.+. ...+++....+.++.. |..........+...+....+.
T Consensus 155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~v-f~~~~~~~~~ipt~~~g~~~f~ 232 (282)
T COG0421 155 VDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRV-FSIVPPYVAPIPTYPSGFWGFI 232 (282)
T ss_pred EcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhh-ccccccceeccceecCCceEEE
Confidence 975322 388999999999999998887532 2235566666666666 6666655555555555533333
No 191
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.89 E-value=7.9e-08 Score=81.28 Aligned_cols=146 Identities=15% Similarity=0.111 Sum_probs=101.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCEEEEEccccccccCCcCCC-CceEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ----LLNVQIVRGRAETLGKDVSFRE-QYDVA 150 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~-~fD~I 150 (243)
..+||=||-|.|..+..+.+..+-.+|+.||+++..++.+++...... -++++++.+|...+.... .+ +||+|
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~--~~~~yDvI 154 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET--QEEKYDVI 154 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS--SST-EEEE
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc--cCCcccEE
Confidence 789999999999988777755445799999999999999999866532 246999999998865432 24 89999
Q ss_pred EEcCcc--------cHHHHHHHHccCcccCeEEEEEe--CCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEE
Q 026122 151 VARAVA--------EMRILAEYCLPLVRVGGLFVAAK--GHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVV 220 (243)
Q Consensus 151 ~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~ 220 (243)
+..... --.++++.+++.|+|||.+++-. .......+..+.+.++.... .+.......|.....-..+.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~-~v~~~~~~vP~~~~~~~~~~ 233 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP-QVKPYTAYVPSYGSGWWSFA 233 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS-EEEEEEEECTTSCSSEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC-ceEEEEEEcCeecccceeEE
Confidence 995422 13789999999999999988765 23345566666777766655 44444455565555544444
Q ss_pred EEee
Q 026122 221 CLKS 224 (243)
Q Consensus 221 ~~k~ 224 (243)
..++
T Consensus 234 ~~s~ 237 (246)
T PF01564_consen 234 SASK 237 (246)
T ss_dssp EEES
T ss_pred EEeC
Confidence 4443
No 192
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.89 E-value=1.5e-08 Score=87.55 Aligned_cols=76 Identities=11% Similarity=0.023 Sum_probs=62.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcC-CCCceEEEE
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF-REQYDVAVA 152 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~fD~I~~ 152 (243)
++..++|.+||.|..+..++...+ .++|+|+|.++++++.+++.... ..++++++++..++...... ..++|.|++
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~ 96 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGILL 96 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEEE
Confidence 378999999999999999998875 68999999999999999987755 45799999999886432110 027999998
No 193
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.89 E-value=5.9e-09 Score=82.22 Aligned_cols=74 Identities=18% Similarity=0.190 Sum_probs=56.0
Q ss_pred eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEc
Q 026122 78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
.|+|+.||.|..++.+|+.+ .+|++||+++..++.++.|++-.|+. +|+++++|+.+..........+|+|++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 69999999999999999874 58999999999999999999999975 6999999999875432111128999984
No 194
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.85 E-value=1.3e-07 Score=77.66 Aligned_cols=138 Identities=13% Similarity=0.044 Sum_probs=92.8
Q ss_pred EEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEcCcc-
Q 026122 79 LVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARAVA- 156 (243)
Q Consensus 79 VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~- 156 (243)
|.||||--|.+++.|.+.....+++++|+++.-++.|++++++.++.+ ++++.+|..+.-... +..|.|+..++.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~---e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPG---EDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GG---G---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCC---CCCCEEEEecCCH
Confidence 689999999999999988666689999999999999999999999865 999999976543221 337888875543
Q ss_pred -cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEeeC
Q 026122 157 -EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSR 225 (243)
Q Consensus 157 -~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~~ 225 (243)
.+.++++.....++..-.|++ .+... ...++++|...||.+.+..-+. ....-..++.+.+..
T Consensus 78 ~lI~~ILe~~~~~~~~~~~lIL-qP~~~---~~~LR~~L~~~gf~I~~E~lv~--e~~~~YeIi~~~~~~ 141 (205)
T PF04816_consen 78 ELIIEILEAGPEKLSSAKRLIL-QPNTH---AYELRRWLYENGFEIIDEDLVE--ENGRFYEIIVAERGE 141 (205)
T ss_dssp HHHHHHHHHTGGGGTT--EEEE-EESS----HHHHHHHHHHTTEEEEEEEEEE--ETTEEEEEEEEEESS
T ss_pred HHHHHHHHhhHHHhccCCeEEE-eCCCC---hHHHHHHHHHCCCEEEEeEEEe--ECCEEEEEEEEEeCC
Confidence 568888888777766556555 33333 3455677779999998876544 222234444444443
No 195
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.85 E-value=3.1e-08 Score=82.49 Aligned_cols=122 Identities=19% Similarity=0.177 Sum_probs=91.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc-C
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR-A 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~-~ 154 (243)
...|-|+|||-+.++. .. ..+|+..|+-. .|-+++.+|+.+.+..+ ++.|+++.. +
T Consensus 181 ~~vIaD~GCGEakiA~----~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d---~svDvaV~CLS 237 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIAS----SE-RHKVHSFDLVA---------------VNERVIACDMRNVPLED---ESVDVAVFCLS 237 (325)
T ss_pred ceEEEecccchhhhhh----cc-ccceeeeeeec---------------CCCceeeccccCCcCcc---CcccEEEeeHh
Confidence 5689999999997743 22 35899999864 14578889999988765 899988853 2
Q ss_pred --cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEeeC
Q 026122 155 --VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSR 225 (243)
Q Consensus 155 --~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~~ 225 (243)
..++..+++++.|+|++||.+++-.-...-+.+..+.+.+..+||...... .......++..+|..
T Consensus 238 LMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d-----~~n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 238 LMGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD-----VSNKYFTLFEFKKTP 305 (325)
T ss_pred hhcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh-----hhcceEEEEEEecCC
Confidence 458999999999999999999997755555667788999999999776542 223445555556553
No 196
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.84 E-value=5.3e-08 Score=82.69 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=57.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCce---EEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYD---VAVA 152 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD---~I~~ 152 (243)
+.+|||||||+|.++..++... .+|+++|+++.+++.++++... ..+++++++|+.+.+. .++| .|++
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~-----~~~d~~~~vvs 100 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDL-----PDFPKQLKVVS 100 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCCh-----hHcCCcceEEE
Confidence 7899999999999999998775 4699999999999998877643 3579999999988764 2456 8888
Q ss_pred cC
Q 026122 153 RA 154 (243)
Q Consensus 153 ~~ 154 (243)
|-
T Consensus 101 Nl 102 (253)
T TIGR00755 101 NL 102 (253)
T ss_pred cC
Confidence 74
No 197
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.83 E-value=4.9e-08 Score=80.12 Aligned_cols=104 Identities=23% Similarity=0.270 Sum_probs=86.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccC---CcCCCCceEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKD---VSFREQYDVA 150 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~---~~~~~~fD~I 150 (243)
++++||||.=||.-++..|...| +++|+++|+++...+.+.+..+..|.. .|++++++..+.... ....+.||++
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 78999999999999999998876 589999999999999999999999986 499999987663211 1113689999
Q ss_pred EEcCcc-cHHHHHHHHccCcccCeEEEEEe
Q 026122 151 VARAVA-EMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 151 ~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
|..+.. ++....+++.++||+||.+++-.
T Consensus 154 FvDadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 154 FVDADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEccchHHHHHHHHHHHhhcccccEEEEec
Confidence 998754 56788999999999999988643
No 198
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=2.6e-07 Score=77.62 Aligned_cols=133 Identities=15% Similarity=0.112 Sum_probs=101.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVA 150 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I 150 (243)
+++|.+|++-|+|+|.++.++++.- |.++++..|..+...+.|++..+..++. |+++.+-|+....+.. ....+|.|
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~-ks~~aDaV 181 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI-KSLKADAV 181 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc-cccccceE
Confidence 5679999999999999999998875 6789999999999999999999999985 6999999988755432 13679999
Q ss_pred EEcCcccHHHHHHHHccCcccCe-EEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEec
Q 026122 151 VARAVAEMRILAEYCLPLVRVGG-LFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVES 209 (243)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 209 (243)
+..-..+++.+-. +.+.||.+| +++..+.. .+.+...-+.+..+||.-+++.++..
T Consensus 182 FLDlPaPw~AiPh-a~~~lk~~g~r~csFSPC--IEQvqrtce~l~~~gf~~i~~vEv~~ 238 (314)
T KOG2915|consen 182 FLDLPAPWEAIPH-AAKILKDEGGRLCSFSPC--IEQVQRTCEALRSLGFIEIETVEVLL 238 (314)
T ss_pred EEcCCChhhhhhh-hHHHhhhcCceEEeccHH--HHHHHHHHHHHHhCCCceEEEEEeeh
Confidence 9977666655544 444888766 65554432 44555666778899997766655543
No 199
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.75 E-value=2e-08 Score=82.46 Aligned_cols=129 Identities=16% Similarity=0.173 Sum_probs=94.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccccCCcCCCCceEEE
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
+.+.+|||.|+|-|..++..+.+ ++.+|+.||.++..++.|.-|-=+.++. .++++.+|+.++.... .+++||+|+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~-~D~sfDaIi 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF-DDESFDAII 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC-CccccceEe
Confidence 35899999999999998766644 4459999999999988887664333332 4899999998875432 136799999
Q ss_pred EcC----cc---cHHHHHHHHccCcccCeEEEEEeCCCc-----HHHHHHHHHHHHHhCCeeeEE
Q 026122 152 ARA----VA---EMRILAEYCLPLVRVGGLFVAAKGHDP-----QEEVKNSERAVQLMGASLLQL 204 (243)
Q Consensus 152 ~~~----~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~-----~~~~~~~~~~l~~~g~~~~~~ 204 (243)
-.. .+ --+++.+++.|+|||||.++-..|... ..-.....+.|++.||..++.
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeee
Confidence 853 11 247889999999999999887765321 122345667788999975543
No 200
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.75 E-value=2e-07 Score=79.23 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=84.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEccccccccCCcCCCCceEEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPD--WKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
.-+||||.||.|..-+......|. .+|...|.|+..++..++.++..|+.++ +|.++|+.+...........+++++
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iV 215 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIV 215 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEE
Confidence 569999999999987777777775 7999999999999999999999999885 9999999885433223356799988
Q ss_pred cCc----cc---HHHHHHHHccCcccCeEEEEEe
Q 026122 153 RAV----AE---MRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 153 ~~~----~~---~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
.++ ++ ....++.+.+.+.|||+++...
T Consensus 216 sGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 216 SGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred ecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 752 22 5667888999999999977654
No 201
>PRK04148 hypothetical protein; Provisional
Probab=98.74 E-value=6.1e-08 Score=73.91 Aligned_cols=83 Identities=10% Similarity=0.069 Sum_probs=60.5
Q ss_pred CCeEEEEcCCCCh-HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc-
Q 026122 76 NLKLVDVGTGAGL-PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR- 153 (243)
Q Consensus 76 ~~~VLDiGcG~G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~- 153 (243)
+.+|+|||||+|. ++..|++. +.+|+++|+++++++.++++ .++++.+|+.+.... .-+.+|+|.+-
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~--~y~~a~liysir 85 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLE--IYKNAKLIYSIR 85 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHH--HHhcCCEEEEeC
Confidence 5789999999996 77777754 68999999999977766554 268999999886543 23679999984
Q ss_pred CcccHHHHHHHHccCc
Q 026122 154 AVAEMRILAEYCLPLV 169 (243)
Q Consensus 154 ~~~~~~~~l~~~~~~L 169 (243)
...++...+-.+.+.+
T Consensus 86 pp~el~~~~~~la~~~ 101 (134)
T PRK04148 86 PPRDLQPFILELAKKI 101 (134)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 3445544444444444
No 202
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.74 E-value=6.2e-08 Score=85.19 Aligned_cols=105 Identities=11% Similarity=0.097 Sum_probs=70.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-------C---CCEEEEEccccccccC---C
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-------L---LNVQIVRGRAETLGKD---V 141 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~---~~v~~~~~d~~~~~~~---~ 141 (243)
++.+|||+|||-|.-..-.... .-.+++|+|++...++.|++..+... . -...++.+|....... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 3789999999988754334433 34699999999999999988873211 1 1267788887643211 0
Q ss_pred cCCCCceEEEEcC--------cccHHHHHHHHccCcccCeEEEEEeC
Q 026122 142 SFREQYDVAVARA--------VAEMRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 142 ~~~~~fD~I~~~~--------~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
....+||+|-|.- -.....+++.+...|+|||.++....
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 1014899999952 22467899999999999999887654
No 203
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.74 E-value=7.4e-08 Score=83.11 Aligned_cols=112 Identities=18% Similarity=0.180 Sum_probs=88.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
.++.+|||+++|+|.-+..+|.... .+.|++.|++++.+...+.+++++|..++.+.+.|........ ....||.|+.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~-~~~~fd~Vlv 162 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKK-PESKFDRVLV 162 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHH-HTTTEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccc-cccccchhhc
Confidence 3488999999999999888888765 6899999999999999999999999999999988887763211 1145999998
Q ss_pred cCc--------------------------ccHHHHHHHHccCc----ccCeEEEEEeCCCcHHH
Q 026122 153 RAV--------------------------AEMRILAEYCLPLV----RVGGLFVAAKGHDPQEE 186 (243)
Q Consensus 153 ~~~--------------------------~~~~~~l~~~~~~L----kpgG~l~~~~~~~~~~~ 186 (243)
.+. .-..++++.+.+.+ ||||+++.....-..+|
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eE 226 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEE 226 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGG
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHH
Confidence 420 01477899999999 99999998886543333
No 204
>PRK00536 speE spermidine synthase; Provisional
Probab=98.71 E-value=7.6e-07 Score=75.67 Aligned_cols=138 Identities=9% Similarity=-0.024 Sum_probs=94.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----cCCCCEEEEEccccccccCCcCCCCceEE
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL----TQLLNVQIVRGRAETLGKDVSFREQYDVA 150 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~v~~~~~d~~~~~~~~~~~~~fD~I 150 (243)
..++||=||.|-|..+..+.+. +. +|+.||++++.++.+++.... ..-++++++.. ..+. ..++||+|
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~-----~~~~fDVI 143 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL-----DIKKYDLI 143 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc-----cCCcCCEE
Confidence 3789999999999988777754 54 999999999999999995433 22345777752 2111 12689999
Q ss_pred EEcCcccHHHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEe
Q 026122 151 VARAVAEMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK 223 (243)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k 223 (243)
++....+ .++.+.+++.|+|||.++.-.+. -..+.+..+.+.+++ .|..........+. .+.=..+++.+
T Consensus 144 IvDs~~~-~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~-~F~~v~~y~~~vp~-~g~wgf~~aS~ 215 (262)
T PRK00536 144 ICLQEPD-IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGD-FFSIAMPFVAPLRI-LSNKGYIYASF 215 (262)
T ss_pred EEcCCCC-hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHh-hCCceEEEEecCCC-cchhhhheecC
Confidence 9975433 67889999999999998875532 235566677777777 67765544433332 23334444444
No 205
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=1.1e-08 Score=79.53 Aligned_cols=131 Identities=17% Similarity=0.204 Sum_probs=98.2
Q ss_pred CCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCEEEEEccccccccCCcCCCCceEEE
Q 026122 76 NLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ---LLNVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 76 ~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
+.+||++|.| +|..++.+|...|...|...|-+++.++..++....+. +..+.++..++..-..+. ....||+|+
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~-eq~tFDiIl 108 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQ-EQHTFDIIL 108 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHH-hhCcccEEE
Confidence 7799999999 78788899988888999999999999998888776652 333444444443322211 124799999
Q ss_pred EcC---c-ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122 152 ARA---V-AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE 208 (243)
Q Consensus 152 ~~~---~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 208 (243)
+.. + ...+.+++.++.+|+|.|.-++ ..+.....+..+.+...+.||.+...++++
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~-fsPRRg~sL~kF~de~~~~gf~v~l~enyd 168 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRALL-FSPRRGQSLQKFLDEVGTVGFTVCLEENYD 168 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCcccceeE-ecCcccchHHHHHHHHHhceeEEEecccHh
Confidence 864 2 2468899999999999999554 455667788999999999999887666544
No 206
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.70 E-value=2e-08 Score=79.94 Aligned_cols=94 Identities=22% Similarity=0.299 Sum_probs=77.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 155 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 155 (243)
.+.+-|+|+|+|.++...|.. +-+|++||.++.....|.+|+.-.|..|++++++|+.+... +..|+|+|...
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-----e~ADvvicEml 105 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-----ENADVVICEML 105 (252)
T ss_pred hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-----cccceeHHHHh
Confidence 468999999999999776654 57999999999999999999988888899999999999865 56899999542
Q ss_pred c------cHHHHHHHHccCcccCeEEE
Q 026122 156 A------EMRILAEYCLPLVRVGGLFV 176 (243)
Q Consensus 156 ~------~~~~~l~~~~~~LkpgG~l~ 176 (243)
. ....++..+...||.++.++
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCccc
Confidence 1 34455666666888888866
No 207
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.68 E-value=3.9e-06 Score=69.02 Aligned_cols=147 Identities=18% Similarity=0.115 Sum_probs=95.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
++++.+||-+|+.+|.--..++..- +.+.|+|||.|+....-.-..+++. +|+-.+.+|+.....-...-+..|+|+
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~VDvI~ 148 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEMVDVIF 148 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--EEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHHhhcccccccEEE
Confidence 4668999999999999766777654 4789999999997665554444432 478889999876433222235899999
Q ss_pred EcC-cc-cHHHHHHHHccCcccCeEEEEEeC-------CCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEE
Q 026122 152 ARA-VA-EMRILAEYCLPLVRVGGLFVAAKG-------HDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCL 222 (243)
Q Consensus 152 ~~~-~~-~~~~~l~~~~~~LkpgG~l~~~~~-------~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~ 222 (243)
+.- .+ ..+-++..+...||+||.++++.- ....+...+-.+.|++.||++.+.. ++..-..++.+|+.+
T Consensus 149 ~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i--~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 149 QDVAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQI--TLEPYERDHAMVVGR 226 (229)
T ss_dssp EE-SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEE--E-TTTSTTEEEEEEE
T ss_pred ecCCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEe--ccCCCCCCcEEEEEE
Confidence 963 33 456677788889999999887651 2334445555667778899887664 443434455555554
Q ss_pred e
Q 026122 223 K 223 (243)
Q Consensus 223 k 223 (243)
.
T Consensus 227 y 227 (229)
T PF01269_consen 227 Y 227 (229)
T ss_dssp E
T ss_pred e
Confidence 3
No 208
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.64 E-value=8.5e-08 Score=78.78 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=64.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-------cCC--CCEEEEEccccccccCCcCC
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL-------TQL--LNVQIVRGRAETLGKDVSFR 144 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~--~~v~~~~~d~~~~~~~~~~~ 144 (243)
.+++..+|||||.|...+..|...+..+++|||+.+...+.|+...+. .|. .++++.++|+.+.......-
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~ 120 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW 120 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh
Confidence 347899999999999988888777655699999999988887665432 343 34888899987643211001
Q ss_pred CCceEEEEcCcc---cHHHHHHHHccCcccCeEEEE
Q 026122 145 EQYDVAVARAVA---EMRILAEYCLPLVRVGGLFVA 177 (243)
Q Consensus 145 ~~fD~I~~~~~~---~~~~~l~~~~~~LkpgG~l~~ 177 (243)
...|+|++|+.. ++..-+......||+|-+++-
T Consensus 121 s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 121 SDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 357999998743 455555666678899988664
No 209
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.63 E-value=1.5e-07 Score=72.52 Aligned_cols=59 Identities=25% Similarity=0.348 Sum_probs=53.2
Q ss_pred eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc
Q 026122 78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET 136 (243)
Q Consensus 78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 136 (243)
+++|+|||.|..++.++...++++|+++|+++.+.+.++++++.+++.++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 48999999999999999888888999999999999999999999988778888777655
No 210
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.62 E-value=3.4e-07 Score=88.31 Aligned_cols=107 Identities=8% Similarity=-0.030 Sum_probs=79.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHC------------------------------------------CCCEEEEEeCCHHH
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIAC------------------------------------------PDWKVTLLESMNKR 111 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~------------------------------------------~~~~v~~vD~s~~~ 111 (243)
+++..++|-+||+|.+.+..|... ...+++|+|+++++
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 447899999999999988877631 12379999999999
Q ss_pred HHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEcC-----c---ccHHHHHHHHccCcc---cCeEEEEEe
Q 026122 112 CVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA-----V---AEMRILAEYCLPLVR---VGGLFVAAK 179 (243)
Q Consensus 112 ~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~~-----~---~~~~~~l~~~~~~Lk---pgG~l~~~~ 179 (243)
++.|++|++.+|+.+ +++.++|+.++.... ..++||+|++|. . .+...+.+.+.+.++ +|+.+++..
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPL-PKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhccccc-ccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 999999999999965 999999999875431 124699999984 1 123344444333333 888888877
Q ss_pred CC
Q 026122 180 GH 181 (243)
Q Consensus 180 ~~ 181 (243)
+.
T Consensus 348 ~~ 349 (702)
T PRK11783 348 SS 349 (702)
T ss_pred CC
Confidence 63
No 211
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.54 E-value=4.4e-07 Score=74.10 Aligned_cols=102 Identities=13% Similarity=0.130 Sum_probs=65.4
Q ss_pred CCeEEEEcCCCChHHHHHHHH--------CC-CCEEEEEeCCHHHHHHHHHHH--------------HH-c----C----
Q 026122 76 NLKLVDVGTGAGLPGLVLAIA--------CP-DWKVTLLESMNKRCVFLEHAV--------------SL-T----Q---- 123 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~--------~~-~~~v~~vD~s~~~~~~a~~~~--------------~~-~----~---- 123 (243)
.-+|+..||+||-=...+|.. .+ ..+|+|+|+|+.+++.|++-. ++ . +
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 568999999999854333321 11 369999999999999986531 11 1 1
Q ss_pred C-----CCEEEEEccccccccCCcCCCCceEEEEcCcc------cHHHHHHHHccCcccCeEEEEEeC
Q 026122 124 L-----LNVQIVRGRAETLGKDVSFREQYDVAVARAVA------EMRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 124 ~-----~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
+ ++|+|.+.|+.+.... .+.||+|+|+++. ....+++.+.+.|+|||.|++-.+
T Consensus 112 v~~~lr~~V~F~~~NL~~~~~~---~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDPDPP---FGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred EChHHcCceEEEecccCCCCcc---cCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 1 2488999998882222 3789999998743 468999999999999999988443
No 212
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.53 E-value=1.1e-06 Score=74.48 Aligned_cols=146 Identities=17% Similarity=0.153 Sum_probs=86.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc----------------C-----------CC-CE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT----------------Q-----------LL-NV 127 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------~-----------~~-~v 127 (243)
+.++||||||+-..-+.-|..+ --+|+..|.++...+..++-+++- | +. .|
T Consensus 57 g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 57 GETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 6799999999976532223221 247999999998887655543321 1 00 12
Q ss_pred -EEEEccccccccCCc---CCCCceEEEEcC--------cccHHHHHHHHccCcccCeEEEEEe---------CCC----
Q 026122 128 -QIVRGRAETLGKDVS---FREQYDVAVARA--------VAEMRILAEYCLPLVRVGGLFVAAK---------GHD---- 182 (243)
Q Consensus 128 -~~~~~d~~~~~~~~~---~~~~fD~I~~~~--------~~~~~~~l~~~~~~LkpgG~l~~~~---------~~~---- 182 (243)
+++.+|+.+.++... .+.+||+|++.- ...+...++.+.++|||||.|++.. |..
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~ 215 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPC 215 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE-
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEeccc
Confidence 477888877554322 234599999842 4468889999999999999998653 111
Q ss_pred cHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEe
Q 026122 183 PQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK 223 (243)
Q Consensus 183 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k 223 (243)
..-.-..+.+.++++|+.+.+.+. .....+-+..++++.+
T Consensus 216 l~l~ee~v~~al~~aG~~i~~~~~-~~~~~d~~~~~f~~a~ 255 (256)
T PF01234_consen 216 LPLNEEFVREALEEAGFDIEDLEK-QSKVSDYEGMFFLVAR 255 (256)
T ss_dssp --B-HHHHHHHHHHTTEEEEEEEG--TTTB---EEEEEEEE
T ss_pred ccCCHHHHHHHHHHcCCEEEeccc-ccCcCCCCcEEEEEEe
Confidence 011223466788899999988874 3333333445544443
No 213
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.53 E-value=1.6e-05 Score=66.18 Aligned_cols=128 Identities=13% Similarity=0.184 Sum_probs=82.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
|++||=+|=.- ..++++|...+..+|+-+|+++..+++.++.+++.|++ ++.+..|+.+--+. ...++||++++..
T Consensus 45 gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~-~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 45 GKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPE-ELRGKFDVFFTDPP 121 (243)
T ss_dssp T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---T-TTSS-BSEEEE---
T ss_pred CCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCH-HHhcCCCEEEeCCC
Confidence 78999998444 35677777777789999999999999999999999997 99999999874332 3458999999975
Q ss_pred --cccHHHHHHHHccCcccCe-EEEEEeCCCc--HHHHHHHHHHHHHhCCeeeEEEE
Q 026122 155 --VAEMRILAEYCLPLVRVGG-LFVAAKGHDP--QEEVKNSERAVQLMGASLLQLCS 206 (243)
Q Consensus 155 --~~~~~~~l~~~~~~LkpgG-~l~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~~ 206 (243)
...+.-++......||..| ..++..+... .....++++.+...|+.+.++..
T Consensus 122 yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~ 178 (243)
T PF01861_consen 122 YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDIIP 178 (243)
T ss_dssp SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHHh
Confidence 3356778888888888655 5555555443 45556788888899998887643
No 214
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=8.2e-07 Score=75.06 Aligned_cols=74 Identities=19% Similarity=0.163 Sum_probs=60.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
++.+|||||+|.|.++..|++. +.+|++||+++.+++..++... ...|++++++|+........ ..++.|++|-
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l--~~~~~vVaNl 103 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSL--AQPYKVVANL 103 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchhh--cCCCEEEEcC
Confidence 3789999999999999999976 4689999999999888887765 33579999999999876410 1689999985
No 215
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.50 E-value=4e-07 Score=78.43 Aligned_cols=102 Identities=16% Similarity=0.183 Sum_probs=73.6
Q ss_pred CCeEEEEcCCCChHHHHHHH----HCC----CCEEEEEeCCHHHHHHHHHHH------H------------H-----cC-
Q 026122 76 NLKLVDVGTGAGLPGLVLAI----ACP----DWKVTLLESMNKRCVFLEHAV------S------------L-----TQ- 123 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~----~~~----~~~v~~vD~s~~~~~~a~~~~------~------------~-----~~- 123 (243)
.-+|+..||.||-=...+|. ..+ ..+|+|+|+|+.+++.|++.. + + .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 36999999999985444443 221 368999999999999998752 0 0 01
Q ss_pred ------C-CCEEEEEccccccccCCcCCCCceEEEEcCc------ccHHHHHHHHccCcccCeEEEEEe
Q 026122 124 ------L-LNVQIVRGRAETLGKDVSFREQYDVAVARAV------AEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 124 ------~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+ ..|+|...|+.+.+... .+.||+|+|+++ .....+++.+.+.|+|||+|++-.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~--~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAV--PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCcc--CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 1 13788888887643211 268999999763 357899999999999999987744
No 216
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.49 E-value=2e-06 Score=74.00 Aligned_cols=106 Identities=11% Similarity=0.061 Sum_probs=74.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-C----CEEEEEccccccccCCcC--C-
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-L-L----NVQIVRGRAETLGKDVSF--R- 144 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~----~v~~~~~d~~~~~~~~~~--~- 144 (243)
+++..++|+|||-|.-.+-.-++ +-.+++|+|+.+-.++.|++..+... . . .+.|+.+|...-...+.. +
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 34789999999999875444433 23589999999999999988765431 1 1 278999987653221111 1
Q ss_pred CCceEEEEcC--------cccHHHHHHHHccCcccCeEEEEEeC
Q 026122 145 EQYDVAVARA--------VAEMRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 145 ~~fD~I~~~~--------~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
.+||+|-|.- ......++..+.+.|+|||.++-..+
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 3499998841 23467889999999999999776544
No 217
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=1.8e-07 Score=84.83 Aligned_cols=63 Identities=27% Similarity=0.273 Sum_probs=56.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG 138 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 138 (243)
+.+..++|+.||||.+++.+|+. ..+|+|||+++.+++-|++|++.+|+.|.+|+++.++++-
T Consensus 382 ~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~ 444 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLF 444 (534)
T ss_pred CCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhhcc
Confidence 44789999999999999888854 5799999999999999999999999999999999777754
No 218
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.49 E-value=2.3e-06 Score=80.05 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=55.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHCC--------CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc--CCcCCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACP--------DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK--DVSFRE 145 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~--------~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~~ 145 (243)
..+|||.|||+|.+.+.++...+ ..+++|+|+++.++..++.++...+..++.+.+.|...... .....+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 56999999999999877776543 25799999999999999999887762235555555332111 001125
Q ss_pred CceEEEEc
Q 026122 146 QYDVAVAR 153 (243)
Q Consensus 146 ~fD~I~~~ 153 (243)
+||+|++|
T Consensus 112 ~fD~IIgN 119 (524)
T TIGR02987 112 LFDIVITN 119 (524)
T ss_pred cccEEEeC
Confidence 79999997
No 219
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.47 E-value=1.9e-06 Score=73.63 Aligned_cols=144 Identities=17% Similarity=0.154 Sum_probs=78.5
Q ss_pred CCeEEEEcCCCChH-HHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHH-HcCCC-CEEEEEccccccccCCcCCCCceEEE
Q 026122 76 NLKLVDVGTGAGLP-GLVLAIAC-PDWKVTLLESMNKRCVFLEHAVS-LTQLL-NVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 76 ~~~VLDiGcG~G~~-~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~-~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
+.+|+=||||+=-+ ++.++..+ ++..|+++|+++++++.+++..+ ..++. +++++++|..+..... ..||+|+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl---~~~DvV~ 197 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL---KEYDVVF 197 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-------SEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc---ccCCEEE
Confidence 45999999997544 55666543 56889999999999999999888 55664 4999999998765422 5799999
Q ss_pred EcC-cc----cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEeeC
Q 026122 152 ARA-VA----EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSR 225 (243)
Q Consensus 152 ~~~-~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~~ 225 (243)
..+ +. +-.++++.+.+.++||..+++-.+..-..-+-...+-....||....+. .|..+--..+|+++|..
T Consensus 198 lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~vd~~~l~gf~~~~~~---hP~~~ViNSvv~~rk~~ 273 (276)
T PF03059_consen 198 LAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPVVDPEDLRGFEVLAVV---HPTDEVINSVVFARKKQ 273 (276)
T ss_dssp E-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS----TGGGTTEEEEEEE------TT---EEEEE----
T ss_pred EhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCCCChHHCCCeEEEEEE---CCCCCceeEEEEEEecc
Confidence 866 33 7899999999999999998876543211111000110012277665443 36555577888888764
No 220
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.44 E-value=7.2e-06 Score=72.85 Aligned_cols=123 Identities=17% Similarity=0.132 Sum_probs=93.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
.++.+|||.++-+|.-+..+|.. ...+.|+|-|.+...+...+.|+.++|+.|..+.+.|..+++... ..++||-|+.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~-~~~~fDRVLL 318 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKE-FPGSFDRVLL 318 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccc-cCcccceeee
Confidence 46899999999999977666654 445799999999999999999999999999889999998775332 2358999997
Q ss_pred cC------c--------------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHH-HHHHHh
Q 026122 153 RA------V--------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE-RAVQLM 197 (243)
Q Consensus 153 ~~------~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~l~~~ 197 (243)
.+ + .-..+++..+..++++||+|+...+.-..+|-+... -+|+++
T Consensus 319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~ 390 (460)
T KOG1122|consen 319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKR 390 (460)
T ss_pred cCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhC
Confidence 42 0 014778889999999999999887655444433332 334444
No 221
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.43 E-value=2.7e-06 Score=73.07 Aligned_cols=125 Identities=14% Similarity=0.097 Sum_probs=82.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
+.+|||+|||+|....+....++. .+++++|.|+.|++.++...+...-. ..........+.... .+.|+|++.
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~DLvi~s 109 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF----PPDDLVIAS 109 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC----CCCcEEEEe
Confidence 679999999999876666555553 58999999999999998887654321 121211112111111 345999984
Q ss_pred C------cccHHHHHHHHccCcccCeEEEEEe-CC-CcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122 154 A------VAEMRILAEYCLPLVRVGGLFVAAK-GH-DPQEEVKNSERAVQLMGASLLQLCS 206 (243)
Q Consensus 154 ~------~~~~~~~l~~~~~~LkpgG~l~~~~-~~-~~~~~~~~~~~~l~~~g~~~~~~~~ 206 (243)
. ......+++.+++.+.+ .|++++ |. .....+.++++.+...|+.+..-..
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~APCp 168 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVAPCP 168 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceECCCc
Confidence 2 13467788888887766 777666 32 3356677888888877877765443
No 222
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.43 E-value=5.7e-07 Score=72.35 Aligned_cols=93 Identities=20% Similarity=0.252 Sum_probs=60.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC----c---CCCCc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV----S---FREQY 147 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~----~---~~~~f 147 (243)
+.+|||+||++|..+..+.... +.++|+|+|+.+. ...+++..+++|+.+..... . ...++
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccCc
Confidence 5899999999999987777654 4689999999874 22245667777765422110 0 01489
Q ss_pred eEEEEcCcc---------------cHHHHHHHHccCcccCeEEEEEe
Q 026122 148 DVAVARAVA---------------EMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 148 D~I~~~~~~---------------~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
|+|++.... -....+..+...|+|||.+++-.
T Consensus 93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 999996410 12334445667899999877654
No 223
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.41 E-value=2.5e-06 Score=75.53 Aligned_cols=106 Identities=14% Similarity=0.111 Sum_probs=83.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHCCC--------------------------------C-------EEEEEeCCHHHH
Q 026122 72 SCNSNLKLVDVGTGAGLPGLVLAIACPD--------------------------------W-------KVTLLESMNKRC 112 (243)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~--------------------------------~-------~v~~vD~s~~~~ 112 (243)
...++..++|-=||+|.+.+..|...++ + .++|+|+++.++
T Consensus 188 gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i 267 (381)
T COG0116 188 GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHI 267 (381)
T ss_pred CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHH
Confidence 3455678999999999999999887542 1 377999999999
Q ss_pred HHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEcC-----------cc-cHHHHHHHHccCcccCeEEEEEe
Q 026122 113 VFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA-----------VA-EMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 113 ~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~~-----------~~-~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+.|+.|++..|+.+ |+|.++|+.++.... +.+|+||||. +. =+..+.+.+++.++--+..++..
T Consensus 268 ~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~---~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 268 EGAKANARAAGVGDLIEFKQADATDLKEPL---EEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHHHhcCCCceEEEEEcchhhCCCCC---CcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 99999999999976 999999999987642 6899999984 11 14556667777777777766655
Q ss_pred C
Q 026122 180 G 180 (243)
Q Consensus 180 ~ 180 (243)
.
T Consensus 345 ~ 345 (381)
T COG0116 345 S 345 (381)
T ss_pred c
Confidence 4
No 224
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.38 E-value=1.1e-06 Score=70.54 Aligned_cols=95 Identities=15% Similarity=0.135 Sum_probs=73.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 155 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 155 (243)
+++|||+|+|+|..++..++. +...|++.|+.+.....++.|++.++. ++.+...|+-. .. ..||+++...+
T Consensus 80 gkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g-~~-----~~~Dl~LagDl 151 (218)
T COG3897 80 GKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG-SP-----PAFDLLLAGDL 151 (218)
T ss_pred cceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC-CC-----cceeEEEeece
Confidence 899999999999999888866 467899999999999999999999886 48888888776 22 67999998652
Q ss_pred ----ccHHHHHHHHccCcccCeEEEEEe
Q 026122 156 ----AEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 156 ----~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
..-..++. ++..++..|..+++-
T Consensus 152 fy~~~~a~~l~~-~~~~l~~~g~~vlvg 178 (218)
T COG3897 152 FYNHTEADRLIP-WKDRLAEAGAAVLVG 178 (218)
T ss_pred ecCchHHHHHHH-HHHHHHhCCCEEEEe
Confidence 12344555 566666666655544
No 225
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.38 E-value=3.5e-06 Score=73.52 Aligned_cols=148 Identities=14% Similarity=0.107 Sum_probs=88.9
Q ss_pred CCeEEEEcCCCChHHHHHHHH-------CCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccccCCcCCCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIA-------CPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVSFREQ 146 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~-------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~ 146 (243)
+.+|+|-+||+|.+.+.+... ....+++|+|+++.++..++.++.-.+.. +..+..+|........ ...+
T Consensus 47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~-~~~~ 125 (311)
T PF02384_consen 47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI-KNQK 125 (311)
T ss_dssp TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT-ST--
T ss_pred cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc-cccc
Confidence 678999999999987666552 35789999999999999999887766653 3568888875543321 1257
Q ss_pred ceEEEEcC----c--c-------------------cHHHHHHHHccCcccCeEEEEEeCCCc---HHHHHHHHHHHHHhC
Q 026122 147 YDVAVARA----V--A-------------------EMRILAEYCLPLVRVGGLFVAAKGHDP---QEEVKNSERAVQLMG 198 (243)
Q Consensus 147 fD~I~~~~----~--~-------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~l~~~g 198 (243)
||+|++|. . . .-..++..+.+.|++||++.++.+... ...-..+++.+-+.+
T Consensus 126 ~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~~ 205 (311)
T PF02384_consen 126 FDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLENG 205 (311)
T ss_dssp EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHHE
T ss_pred cccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHHhhc
Confidence 99999962 1 0 113588889999999999877764321 111234444443433
Q ss_pred CeeeEEEEEe---cCCCCCceEEEEEEeeC
Q 026122 199 ASLLQLCSVE---SQSPFGQRTAVVCLKSR 225 (243)
Q Consensus 199 ~~~~~~~~~~---~~~~~~~r~~v~~~k~~ 225 (243)
. +..+-.+. +......-.+++++|..
T Consensus 206 ~-i~aVI~Lp~~~F~~t~v~t~ilil~k~~ 234 (311)
T PF02384_consen 206 Y-IEAVISLPSNLFKPTGVPTSILILNKKK 234 (311)
T ss_dssp E-EEEEEE--TTSSSSSSS-EEEEEEEESS
T ss_pred h-hhEEeecccceecccCcCceEEEEeecc
Confidence 2 33332222 12222355666667665
No 226
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.38 E-value=1.9e-06 Score=72.53 Aligned_cols=75 Identities=23% Similarity=0.201 Sum_probs=63.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
+++++.|||+|-|||.++..+... +.+|+|+|+++.|+...++..+.....+ .+++.+|....+. ..||.++
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-----P~fd~cV 128 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-----PRFDGCV 128 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-----cccceee
Confidence 466899999999999998777765 6899999999999999988887666544 9999999988754 4699999
Q ss_pred EcC
Q 026122 152 ARA 154 (243)
Q Consensus 152 ~~~ 154 (243)
+|-
T Consensus 129 sNl 131 (315)
T KOG0820|consen 129 SNL 131 (315)
T ss_pred ccC
Confidence 973
No 227
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.37 E-value=1.5e-06 Score=67.21 Aligned_cols=73 Identities=18% Similarity=0.274 Sum_probs=58.4
Q ss_pred CCeEEEEcCCCChHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHcC--C-CCEEEEEccccccccCCcCCCCce
Q 026122 76 NLKLVDVGTGAGLPGLVLAIA----CPDWKVTLLESMNKRCVFLEHAVSLTQ--L-LNVQIVRGRAETLGKDVSFREQYD 148 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~--~-~~v~~~~~d~~~~~~~~~~~~~fD 148 (243)
..+|+|+|||.|.++..++.. .++.+|++||.++..++.+++..++.+ . .+.++..+++.+.... ...+
T Consensus 26 ~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 101 (141)
T PF13679_consen 26 CITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSS----DPPD 101 (141)
T ss_pred CCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhccc----CCCe
Confidence 679999999999999999971 267899999999999999999988887 4 4577777777654321 4567
Q ss_pred EEEE
Q 026122 149 VAVA 152 (243)
Q Consensus 149 ~I~~ 152 (243)
+++.
T Consensus 102 ~~vg 105 (141)
T PF13679_consen 102 ILVG 105 (141)
T ss_pred EEEE
Confidence 7775
No 228
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.36 E-value=1.6e-05 Score=65.08 Aligned_cols=143 Identities=12% Similarity=0.041 Sum_probs=105.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
+.+.++.||||=.|++.+.+-+..+...+++.|+++..++.|.++.+++++. .+++..+|....-.. ++.+|+|+.
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~---~d~~d~ivI 91 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL---EDEIDVIVI 91 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc---cCCcCEEEE
Confidence 3467799999999999999998888889999999999999999999999985 488888888543222 257998887
Q ss_pred cCcc--cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEeeC
Q 026122 153 RAVA--EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSR 225 (243)
Q Consensus 153 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~~ 225 (243)
.++. -+..++++-.+.|+.=-+++ ..+.....++ ++++.+.+|.+....=+ .....-..++++.+..
T Consensus 92 AGMGG~lI~~ILee~~~~l~~~~rlI-LQPn~~~~~L---R~~L~~~~~~I~~E~il--eE~~kiYEIlv~e~~~ 160 (226)
T COG2384 92 AGMGGTLIREILEEGKEKLKGVERLI-LQPNIHTYEL---REWLSANSYEIKAETIL--EEDGKIYEILVVEKSS 160 (226)
T ss_pred eCCcHHHHHHHHHHhhhhhcCcceEE-ECCCCCHHHH---HHHHHhCCceeeeeeee--cccCeEEEEEEEecCC
Confidence 6544 46788888888776433433 3444555555 45566999988765432 2334457777777765
No 229
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=1.5e-05 Score=65.01 Aligned_cols=137 Identities=18% Similarity=0.230 Sum_probs=85.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC----cC-CCC
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV----SF-REQ 146 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~----~~-~~~ 146 (243)
++++..|+|+||-+|..+..+++..+ +..|+|||+.+- -...+|.++++|+.+-.... .. ..+
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KPIPGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------ccCCCceEEeeeccCccHHHHHHHHcCCCC
Confidence 35589999999999999988887653 356999999872 12346999999987633210 01 134
Q ss_pred ceEEEEcCcc--------c-------HHHHHHHHccCcccCeEEEEEe--CCCcHHHHHHHHHHHHHhCCeeeEEEEEec
Q 026122 147 YDVAVARAVA--------E-------MRILAEYCLPLVRVGGLFVAAK--GHDPQEEVKNSERAVQLMGASLLQLCSVES 209 (243)
Q Consensus 147 fD~I~~~~~~--------~-------~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 209 (243)
+|+|+|...+ + ....++-+...|+|||.+++-. |......+..+.+ .|..+....-.
T Consensus 112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~-----~F~~v~~~KP~- 185 (205)
T COG0293 112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRR-----LFRKVKIFKPK- 185 (205)
T ss_pred cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHH-----hhceeEEecCc-
Confidence 7999985311 1 2455666778999999988643 6555554544433 33334433211
Q ss_pred CCCCCceEEEEEEeeCC
Q 026122 210 QSPFGQRTAVVCLKSRR 226 (243)
Q Consensus 210 ~~~~~~r~~v~~~k~~~ 226 (243)
......+.+.++.+...
T Consensus 186 aSR~~S~E~y~v~~~~~ 202 (205)
T COG0293 186 ASRKRSREIYLVAKGFK 202 (205)
T ss_pred cccCCCceEEEEEeccc
Confidence 12222456666665543
No 230
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.33 E-value=1.4e-05 Score=69.92 Aligned_cols=155 Identities=16% Similarity=0.170 Sum_probs=106.3
Q ss_pred CCCCCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHH--HHHc---CC--CCEEEEEccccccccCCc
Q 026122 71 SSCNSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHA--VSLT---QL--LNVQIVRGRAETLGKDVS 142 (243)
Q Consensus 71 ~~~~~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~--~~~~---~~--~~v~~~~~d~~~~~~~~~ 142 (243)
+.++...+||-+|.|-|.-...+. ++| -.+|+.||.+|+|++.++++ .++. .+ +++++++.|+.++-...
T Consensus 285 s~~~~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a- 362 (508)
T COG4262 285 SSVRGARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA- 362 (508)
T ss_pred ccccccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh-
Confidence 344556789999999998776665 457 46999999999999999844 3332 23 34999999998875432
Q ss_pred CCCCceEEEEcCc-------c--cHHHHHHHHccCcccCeEEEEEeCCC--cHHHHHHHHHHHHHhCCeeeEEEEEecCC
Q 026122 143 FREQYDVAVARAV-------A--EMRILAEYCLPLVRVGGLFVAAKGHD--PQEEVKNSERAVQLMGASLLQLCSVESQS 211 (243)
Q Consensus 143 ~~~~fD~I~~~~~-------~--~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 211 (243)
.+.||.||..-. . --.++...+++.|+++|.+++-.+.. ..+..-.+...++.+|+...- ..++.|
T Consensus 363 -~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~P-yhv~VP- 439 (508)
T COG4262 363 -ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWP-YHVHVP- 439 (508)
T ss_pred -cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeee-eEEecC-
Confidence 368999998521 1 13677888999999999988866432 223333455677899975533 223333
Q ss_pred CCCceEEEEEEeeCCCCCC
Q 026122 212 PFGQRTAVVCLKSRRTPKK 230 (243)
Q Consensus 212 ~~~~r~~v~~~k~~~~~~~ 230 (243)
..++=.+++..+..-.++.
T Consensus 440 TFGeWGf~l~~~~~~~fep 458 (508)
T COG4262 440 TFGEWGFILAAPGDADFEP 458 (508)
T ss_pred cccccceeecccccCCCCC
Confidence 3567777777776555544
No 231
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=5.8e-05 Score=61.09 Aligned_cols=147 Identities=17% Similarity=0.151 Sum_probs=99.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
++++.+||=+|+-+|.-.-..+...+.+.|+|||.|+....-.-..+++. +|+-.+.+|+.....-...-+..|+|+.
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcHHhhhhcccccEEEE
Confidence 46699999999999998778887777789999999998765554444432 4677888888763322112257999998
Q ss_pred cC-cc-cHHHHHHHHccCcccCeEEEEEe-C------CCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEe
Q 026122 153 RA-VA-EMRILAEYCLPLVRVGGLFVAAK-G------HDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK 223 (243)
Q Consensus 153 ~~-~~-~~~~~l~~~~~~LkpgG~l~~~~-~------~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k 223 (243)
.- .. ..+-+...+...||+||.+++.. . .+..+-+++..+.++..+|++.+... +..-+.++.+|+.+.
T Consensus 152 DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~--LePye~DH~~i~~~~ 229 (231)
T COG1889 152 DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVD--LEPYEKDHALIVAKY 229 (231)
T ss_pred ecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEec--cCCcccceEEEEEee
Confidence 53 33 34666778899999999877553 1 22334445556678888988876643 333344555555443
No 232
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.33 E-value=3.3e-06 Score=66.23 Aligned_cols=103 Identities=19% Similarity=0.224 Sum_probs=76.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc--cCCcCCCCceEE
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAI-ACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG--KDVSFREQYDVA 150 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~fD~I 150 (243)
+++.-|||+|.|||.++-.+.. ..+...++++|.|++.+....+.. +.++++++|+.++. ........||.|
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e~~gq~~D~v 121 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGEHKGQFFDSV 121 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHhhcCCCeeeeE
Confidence 3477999999999999765554 345679999999999877765542 34779999998876 221223569999
Q ss_pred EEcC------cccHHHHHHHHccCcccCeEEEEEe-CC
Q 026122 151 VARA------VAEMRILAEYCLPLVRVGGLFVAAK-GH 181 (243)
Q Consensus 151 ~~~~------~~~~~~~l~~~~~~LkpgG~l~~~~-~~ 181 (243)
+|.- ....-++++.+...|.+||.++-.. |+
T Consensus 122 iS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 122 ISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred EeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 9953 2345778899999999999988554 53
No 233
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.28 E-value=1.6e-05 Score=68.68 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=48.3
Q ss_pred CCeEEEEcCCCChH-HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-CCCC-EEEEEccccccccC--CcCCCCceEE
Q 026122 76 NLKLVDVGTGAGLP-GLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-QLLN-VQIVRGRAETLGKD--VSFREQYDVA 150 (243)
Q Consensus 76 ~~~VLDiGcG~G~~-~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~-v~~~~~d~~~~~~~--~~~~~~fD~I 150 (243)
.-++||||||.-.+ .+..++.+ +++++|.|+++..++.|+++++++ ++.+ |+++...-.+.... ....+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 45899999998765 44555554 899999999999999999999999 8864 88876643221111 1112579999
Q ss_pred EEc
Q 026122 151 VAR 153 (243)
Q Consensus 151 ~~~ 153 (243)
+||
T Consensus 182 mCN 184 (299)
T PF05971_consen 182 MCN 184 (299)
T ss_dssp EE-
T ss_pred ecC
Confidence 997
No 234
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.27 E-value=5.2e-07 Score=66.05 Aligned_cols=96 Identities=20% Similarity=0.225 Sum_probs=42.7
Q ss_pred EEEcCCCChHHHHHHHHCCC---CEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122 80 VDVGTGAGLPGLVLAIACPD---WKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARAV 155 (243)
Q Consensus 80 LDiGcG~G~~~~~la~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 155 (243)
|||||..|..++.++...+. .+++++|..+. .+..++.+++.++. ++++++++..+...... .+++|+|+..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-DGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-H--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-CCCEEEEEECCC
Confidence 68999999988787765433 37999999985 33455555555554 59999999877532211 268999999874
Q ss_pred c---cHHHHHHHHccCcccCeEEEE
Q 026122 156 A---EMRILAEYCLPLVRVGGLFVA 177 (243)
Q Consensus 156 ~---~~~~~l~~~~~~LkpgG~l~~ 177 (243)
. ....-++.+.+.|+|||.+++
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 3 456667788999999999776
No 235
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.25 E-value=2.2e-05 Score=68.77 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=79.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
.++.++|||||++|..+..+.+. +.+|+|||..+- + ..+. ...+|+.+.+|.....+. .+.+|.++|.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l----~-~~L~--~~~~V~h~~~d~fr~~p~---~~~vDwvVcD 277 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPM----A-QSLM--DTGQVEHLRADGFKFRPP---RKNVDWLVCD 277 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhc----C-Hhhh--CCCCEEEEeccCcccCCC---CCCCCEEEEe
Confidence 45899999999999999888865 569999996651 2 2222 234588998888776542 2689999999
Q ss_pred CcccHHHHHHHHccCcccC--eEEEEEe---CCCcHHHHHH----HHHHHHHhCC
Q 026122 154 AVAEMRILAEYCLPLVRVG--GLFVAAK---GHDPQEEVKN----SERAVQLMGA 199 (243)
Q Consensus 154 ~~~~~~~~l~~~~~~Lkpg--G~l~~~~---~~~~~~~~~~----~~~~l~~~g~ 199 (243)
....+..+.+.+.++|..| ...++.. +...-+++.. +.+.+.+.|.
T Consensus 278 mve~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~ 332 (357)
T PRK11760 278 MVEKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGI 332 (357)
T ss_pred cccCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 8888888889888888776 2334332 2233444444 3344556676
No 236
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.22 E-value=5.7e-06 Score=70.54 Aligned_cols=101 Identities=14% Similarity=0.108 Sum_probs=71.5
Q ss_pred CCeEEEEcCCCChH----HHHHHHHCC-----CCEEEEEeCCHHHHHHHHHH------H---------HHc------C--
Q 026122 76 NLKLVDVGTGAGLP----GLVLAIACP-----DWKVTLLESMNKRCVFLEHA------V---------SLT------Q-- 123 (243)
Q Consensus 76 ~~~VLDiGcG~G~~----~~~la~~~~-----~~~v~~vD~s~~~~~~a~~~------~---------~~~------~-- 123 (243)
.-+|+-.||+||-= ++.+....+ ..+|+|+|+|..+++.|+.- . ++. +
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 56899999999973 334444443 47999999999999988542 1 010 1
Q ss_pred -----C-CCEEEEEccccccccCCcCCCCceEEEEcCcc------cHHHHHHHHccCcccCeEEEEEe
Q 026122 124 -----L-LNVQIVRGRAETLGKDVSFREQYDVAVARAVA------EMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 124 -----~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+ ..|.|...|+.+-.. ..+.||+|+|+++. ...++++..+..|+|||.|++=.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 0 125566666655331 23679999999743 46889999999999999999844
No 237
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.21 E-value=2.6e-05 Score=58.65 Aligned_cols=98 Identities=18% Similarity=0.146 Sum_probs=67.6
Q ss_pred EEEEcCCCChHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccc--cccCCcCCCCceEEEEcC
Q 026122 79 LVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAET--LGKDVSFREQYDVAVARA 154 (243)
Q Consensus 79 VLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~--~~~~~~~~~~fD~I~~~~ 154 (243)
++|+|||+|... .++...+. ..++++|.++.+++.++..... .... +.+..++... .+... ...||++.+..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFED--SASFDLVISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCC--CCceeEEeeee
Confidence 999999999875 34444333 4899999999998885444433 2222 6788888766 33321 03799994433
Q ss_pred cc---cHHHHHHHHccCcccCeEEEEEeC
Q 026122 155 VA---EMRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 155 ~~---~~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
.. .....+..+.+.++|+|.+++...
T Consensus 128 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 128 VLHLLPPAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred ehhcCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 21 258889999999999999887664
No 238
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.21 E-value=7.1e-05 Score=57.49 Aligned_cols=120 Identities=18% Similarity=0.173 Sum_probs=74.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC----------c---ccHHHHHHHHc
Q 026122 101 KVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA----------V---AEMRILAEYCL 166 (243)
Q Consensus 101 ~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~----------~---~~~~~~l~~~~ 166 (243)
+|+|.|+.+++++.+++..++.++. +++++..+=+++..... .++.|+++.|- . ..--..++.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~-~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP-EGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT---S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc-cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 6999999999999999999999885 49999887777654321 13799999972 1 12355667888
Q ss_pred cCcccCeEEEEEe--CCCc-HHHHHHHHHHHHH---hCCeeeEEEEEecCCCCCceEEEEEEe
Q 026122 167 PLVRVGGLFVAAK--GHDP-QEEVKNSERAVQL---MGASLLQLCSVESQSPFGQRTAVVCLK 223 (243)
Q Consensus 167 ~~LkpgG~l~~~~--~~~~-~~~~~~~~~~l~~---~g~~~~~~~~~~~~~~~~~r~~v~~~k 223 (243)
++|+|||.+.++. |... .+|...+.+.++. ..|.+.....+. .......+++++|
T Consensus 80 ~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N--~~~~pp~l~~ieK 140 (140)
T PF06962_consen 80 ELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFIN--QKNNPPLLVIIEK 140 (140)
T ss_dssp HHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS---SS---EEEEEEE
T ss_pred HhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccC--CCCCCCEEEEEEC
Confidence 8999999988776 4333 3444445555544 445554443322 3333455555554
No 239
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.20 E-value=1.9e-05 Score=69.20 Aligned_cols=105 Identities=13% Similarity=0.016 Sum_probs=71.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHC----CCCEEEEEeCCHHHHHHHHHHHHHcCCCC--EEEEEcccccccc---CCcCCC
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIAC----PDWKVTLLESMNKRCVFLEHAVSLTQLLN--VQIVRGRAETLGK---DVSFRE 145 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~---~~~~~~ 145 (243)
++..++|+|||+|.-...|.... ...+.++||+|.++++.+.+.+.....+. +.-+++|..+... .+....
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 36789999999999654433322 24689999999999998888887444444 4458888876421 101123
Q ss_pred CceEEEEcC--c-----ccHHHHHHHHcc-CcccCeEEEEEe
Q 026122 146 QYDVAVARA--V-----AEMRILAEYCLP-LVRVGGLFVAAK 179 (243)
Q Consensus 146 ~fD~I~~~~--~-----~~~~~~l~~~~~-~LkpgG~l~~~~ 179 (243)
...+++.-+ + .....+++.+.+ .|+|||.+++-.
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 466777632 2 245688889999 999999988744
No 240
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.17 E-value=5.4e-05 Score=64.57 Aligned_cols=128 Identities=14% Similarity=0.105 Sum_probs=87.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc---------------------------------
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--------------------------------- 122 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------------- 122 (243)
..+||==|||-|+++..+|.. +..+.|.|.|-.|+-..+-.....
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 568999999999999999976 789999999998865443322210
Q ss_pred -------CCCCEEEEEccccccccCCcCCCCceEEEEc----CcccHHHHHHHHccCcccCeEEEEEeCC-------C--
Q 026122 123 -------QLLNVQIVRGRAETLGKDVSFREQYDVAVAR----AVAEMRILAEYCLPLVRVGGLFVAAKGH-------D-- 182 (243)
Q Consensus 123 -------~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~-------~-- 182 (243)
.-.++....||+.++-......++||+|+.. ...++-+.++.+.++|||||. ++-.|+ .
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~-WIN~GPLlyh~~~~~~ 213 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGY-WINFGPLLYHFEPMSI 213 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCE-EEecCCccccCCCCCC
Confidence 0012445556666554332123689998874 344688999999999999996 443332 1
Q ss_pred -----cHHHHHHHHHHHHHhCCeeeEEEE
Q 026122 183 -----PQEEVKNSERAVQLMGASLLQLCS 206 (243)
Q Consensus 183 -----~~~~~~~~~~~l~~~g~~~~~~~~ 206 (243)
..-...++...+++.||+++..+.
T Consensus 214 ~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 214 PNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 112245677777899999887654
No 241
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.16 E-value=2.3e-06 Score=70.40 Aligned_cols=107 Identities=17% Similarity=0.175 Sum_probs=78.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
...++|||||-|.+...+... .-.+++.+|-|-.|++.++.... .++ .+....+|-+.++... +++|+|++.-
T Consensus 73 fp~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~qd-p~i-~~~~~v~DEE~Ldf~e---ns~DLiisSls 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDAQD-PSI-ETSYFVGDEEFLDFKE---NSVDLIISSLS 146 (325)
T ss_pred CcceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhccCC-Cce-EEEEEecchhcccccc---cchhhhhhhhh
Confidence 357999999999998666544 34689999999999887765422 222 2566778887777653 8999999864
Q ss_pred ---cccHHHHHHHHccCcccCeEEEEEe-CCCcHHHHH
Q 026122 155 ---VAEMRILAEYCLPLVRVGGLFVAAK-GHDPQEEVK 188 (243)
Q Consensus 155 ---~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~ 188 (243)
..++...+..|+..|||+|.++... |.++.-|++
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR 184 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELR 184 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHH
Confidence 3367778889999999999988654 555544443
No 242
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.14 E-value=5.1e-05 Score=61.44 Aligned_cols=144 Identities=16% Similarity=0.159 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhc--cCCccccCChHH-HHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHCC
Q 026122 22 GLFLKKRKQNLQ--KMNLTAVKDVNE-VMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACP 98 (243)
Q Consensus 22 ~~~~~~~~~~n~--~~n~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~ 98 (243)
+.||+.-..-|- ..++.-+.++++ -|.+++.+..... +..-.+.|||||-|.+.+.++-.+|
T Consensus 19 Kr~YRQRAHsNP~sDh~l~yPvsP~~mDWS~~yp~f~~~~---------------~~kvefaDIGCGyGGLlv~Lsp~fP 83 (249)
T KOG3115|consen 19 KRYYRQRAHSNPLSDHTLEYPVSPQEMDWSKYYPDFRRAL---------------NKKVEFADIGCGYGGLLMKLAPKFP 83 (249)
T ss_pred HHHHHHHhhcCCCccCcccCCCChHhCcHHHhhhhhhhhc---------------cccceEEeeccCccchhhhccccCc
Confidence 566666666553 344444444443 4555554432211 1134789999999999999999999
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHHcC-------CCCEEEEEccccccccCCcCCCCc--eEEEEcC----------cccHH
Q 026122 99 DWKVTLLESMNKRCVFLEHAVSLTQ-------LLNVQIVRGRAETLGKDVSFREQY--DVAVARA----------VAEMR 159 (243)
Q Consensus 99 ~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~v~~~~~d~~~~~~~~~~~~~f--D~I~~~~----------~~~~~ 159 (243)
+.-+.|.|+--+..+..++.++.++ ..|+.+...+...+.+..-..++. ++.+... -.--.
T Consensus 84 dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~ 163 (249)
T KOG3115|consen 84 DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITS 163 (249)
T ss_pred cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccceeecCChhHhhhhccceeech
Confidence 9999999999998899988888765 556777766665543221001121 2222211 01125
Q ss_pred HHHHHHccCcccCeEEEEEeC
Q 026122 160 ILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 160 ~~l~~~~~~LkpgG~l~~~~~ 180 (243)
.++.+..-+|++||.++.+..
T Consensus 164 ~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 164 TLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred hHHHHHHhhhhcCceEEEEee
Confidence 566777789999999998765
No 243
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.12 E-value=2.3e-05 Score=66.94 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=58.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
+..|||||.|+|.++..++... .+|+++|+++.+++..++... ...+++++++|+.++............|++|-
T Consensus 31 ~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~Nl 105 (262)
T PF00398_consen 31 GDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYDLLKNQPLLVVGNL 105 (262)
T ss_dssp TSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGGHCSSSEEEEEEEE
T ss_pred CCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHHhhcCCceEEEEEe
Confidence 7899999999999999998774 799999999998888877544 33579999999998765421123556777763
No 244
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.10 E-value=4.4e-05 Score=66.25 Aligned_cols=77 Identities=9% Similarity=0.048 Sum_probs=61.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-c-CCCCceEEEE
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-S-FREQYDVAVA 152 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~-~~~~fD~I~~ 152 (243)
++..++|.=+|.|..+..++...+.++|+|+|.++.+++.+++..+..+ .++++++++..++.... . ..+++|.|+.
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~ 98 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLVTKIDGILV 98 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCCCcccEEEE
Confidence 3789999999999999999887766899999999999999998876543 36999999988764211 0 1146899888
No 245
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.09 E-value=4.8e-05 Score=62.12 Aligned_cols=106 Identities=19% Similarity=0.221 Sum_probs=78.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
++.+||.||-|-|...-.+..+.|..+ +-||..++.++..+...-.- -.||.++.+.+++..... .++.||-|+-..
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~~H-~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~~L-~d~~FDGI~yDT 177 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPDEH-WIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLNTL-PDKHFDGIYYDT 177 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCcce-EEEecCHHHHHHHHhccccc-ccceEEEecchHhhhccc-cccCcceeEeec
Confidence 389999999999999867766666655 55999998666555442211 136999999998865432 236799999877
Q ss_pred cc----cHHHHHHHHccCcccCeEEEEEeCCCc
Q 026122 155 VA----EMRILAEYCLPLVRVGGLFVAAKGHDP 183 (243)
Q Consensus 155 ~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~ 183 (243)
.+ ++..+.+.+.++|||+|.+-+..+...
T Consensus 178 y~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~ 210 (271)
T KOG1709|consen 178 YSELYEDLRHFHQHVVRLLKPEGVFSYFNGLGA 210 (271)
T ss_pred hhhHHHHHHHHHHHHhhhcCCCceEEEecCccc
Confidence 53 567777899999999999988876443
No 246
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.07 E-value=9.4e-06 Score=72.17 Aligned_cols=103 Identities=20% Similarity=0.256 Sum_probs=83.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEE
Q 026122 72 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVA 150 (243)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I 150 (243)
.+.++..++|+|||.|.+...++. +..+.++|+|.++..+..+........+.+ ..++.+|+...+..+ +.||.+
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fed---n~fd~v 182 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFED---NTFDGV 182 (364)
T ss_pred cCcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCc---cccCcE
Confidence 345577899999999999877774 457899999999998888777777666654 455888888877654 789999
Q ss_pred EEcC----cccHHHHHHHHccCcccCeEEEEE
Q 026122 151 VARA----VAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 151 ~~~~----~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
.+.. ..+...+++++++.++|||.++..
T Consensus 183 ~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 183 RFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred EEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 9854 457899999999999999998854
No 247
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.04 E-value=9.9e-05 Score=60.54 Aligned_cols=127 Identities=13% Similarity=0.077 Sum_probs=85.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
.-++|||||=+..+. ++. .+-..|+.||+++. .-.+.++|+.+.+.+....++||+|.+.-
T Consensus 52 ~lrlLEVGals~~N~--~s~-~~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 52 KLRLLEVGALSTDNA--CST-SGWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLV 113 (219)
T ss_pred cceEEeecccCCCCc--ccc-cCceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEE
Confidence 369999999877764 332 34467999999862 24577788888765422347899999853
Q ss_pred ---cc---cHHHHHHHHccCcccCeE-----EEEEeCCC-----cHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEE
Q 026122 155 ---VA---EMRILAEYCLPLVRVGGL-----FVAAKGHD-----PQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTA 218 (243)
Q Consensus 155 ---~~---~~~~~l~~~~~~LkpgG~-----l~~~~~~~-----~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~ 218 (243)
++ ..-++++.+.+.|+|+|. ++++.+.. ..-....+...++..||..++.+. ...-+.
T Consensus 114 LNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~------~~Kl~y 187 (219)
T PF11968_consen 114 LNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKK------SKKLAY 187 (219)
T ss_pred EeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEe------cCeEEE
Confidence 22 467899999999999999 88776421 112234567778899997766543 223444
Q ss_pred EEEEeeCC
Q 026122 219 VVCLKSRR 226 (243)
Q Consensus 219 v~~~k~~~ 226 (243)
.+.++...
T Consensus 188 ~l~r~~~~ 195 (219)
T PF11968_consen 188 WLFRKSGK 195 (219)
T ss_pred EEEeecCC
Confidence 55555433
No 248
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.00 E-value=4.7e-06 Score=68.09 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=62.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcC-CCCceEEEEc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSF-REQYDVAVAR 153 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~-~~~fD~I~~~ 153 (243)
...|+|.-||.|..++..|..+ +.|++||+++..+.+|++|++-.|+++ |+|++||+.++...... ...+|+|+..
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 5689999999999999999774 689999999999999999999999975 99999999886432111 1246687764
No 249
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=1.2e-05 Score=70.51 Aligned_cols=102 Identities=20% Similarity=0.278 Sum_probs=87.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 155 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 155 (243)
..+|+|-=||||.=++..|...+..+|+.=|+|+++++.+++|++.+...+..+++.|+..+-... ...||+|=...+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~--~~~fd~IDiDPF 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHEL--HRAFDVIDIDPF 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhc--CCCccEEecCCC
Confidence 468999999999999999988776699999999999999999999996566778888887765431 267999988888
Q ss_pred ccHHHHHHHHccCcccCeEEEEEe
Q 026122 156 AEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 156 ~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
..+..+++.+.+.++.||.+.+..
T Consensus 131 GSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 131 GSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCchHHHHHHHHhhcCCEEEEEe
Confidence 889999999999999999988754
No 250
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.99 E-value=4e-05 Score=68.70 Aligned_cols=102 Identities=19% Similarity=0.241 Sum_probs=79.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC--EEEEEccccccccCCcCCCCceEEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLN--VQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
+.+|||.=+|||.=++..+...+ ..+|++-|+|+++++.+++|++.+++.. +++.+.|+..+-.. ....||+|=.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~--~~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYS--RQERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCH--STT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhh--ccccCCEEEe
Confidence 45899999999999999998844 4699999999999999999999999865 88999998886421 1378999999
Q ss_pred cCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 153 RAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
........+++.+.+.++.||.+++..
T Consensus 128 DPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 DPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp --SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 988899999999999999999999865
No 251
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=0.00013 Score=58.44 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=61.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc-cccccccC-----CcCC
Q 026122 72 SCNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAETLGKD-----VSFR 144 (243)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~~-----~~~~ 144 (243)
.++++.+|||+||.+|..+.-..+.. |.+.|.|||+-.- .....+.++++ |+.+.... ....
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCC
Confidence 35779999999999999985555554 8899999998641 12233556665 65552110 0012
Q ss_pred CCceEEEEcCc--------ccHHHHH-------HHHccCcccCeEEEEE
Q 026122 145 EQYDVAVARAV--------AEMRILA-------EYCLPLVRVGGLFVAA 178 (243)
Q Consensus 145 ~~fD~I~~~~~--------~~~~~~l-------~~~~~~LkpgG~l~~~ 178 (243)
.+.|+|+|... .+....+ .-+...++|+|.+++-
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK 183 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK 183 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 57999999531 1223333 3345677899998864
No 252
>PRK10742 putative methyltransferase; Provisional
Probab=97.98 E-value=3.6e-05 Score=64.66 Aligned_cols=76 Identities=21% Similarity=0.281 Sum_probs=62.3
Q ss_pred CCCC--eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc------C--C-CCEEEEEccccccccCCc
Q 026122 74 NSNL--KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT------Q--L-LNVQIVRGRAETLGKDVS 142 (243)
Q Consensus 74 ~~~~--~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~--~-~~v~~~~~d~~~~~~~~~ 142 (243)
+++. +|||+-+|+|..++.++.. +++|+++|.++......+.+.++. + + .+++++++|..++...
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~-- 160 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD-- 160 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh--
Confidence 4455 8999999999999888855 678999999999999999999885 3 2 4699999998886543
Q ss_pred CCCCceEEEEc
Q 026122 143 FREQYDVAVAR 153 (243)
Q Consensus 143 ~~~~fD~I~~~ 153 (243)
...+||+|+..
T Consensus 161 ~~~~fDVVYlD 171 (250)
T PRK10742 161 ITPRPQVVYLD 171 (250)
T ss_pred CCCCCcEEEEC
Confidence 12579999995
No 253
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=0.00033 Score=58.20 Aligned_cols=143 Identities=17% Similarity=0.134 Sum_probs=91.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEc
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
++..+||||+-||.++-.+. ..++.+|+|||.....+..--++ -.+ +..-..++..+.... ..+..|++++.
T Consensus 79 k~kv~LDiGsSTGGFTd~lL-q~gAk~VyavDVG~~Ql~~kLR~-----d~rV~~~E~tN~r~l~~~~-~~~~~d~~v~D 151 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLL-QRGAKHVYAVDVGYGQLHWKLRN-----DPRVIVLERTNVRYLTPED-FTEKPDLIVID 151 (245)
T ss_pred CCCEEEEecCCCccHHHHHH-HcCCcEEEEEEccCCccCHhHhc-----CCcEEEEecCChhhCCHHH-cccCCCeEEEE
Confidence 48899999999999985555 45678999999987544332111 123 333444566554432 23568899985
Q ss_pred -CcccHHHHHHHHccCcccCeEEEEEeCC-------------------CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCC
Q 026122 154 -AVAEMRILAEYCLPLVRVGGLFVAAKGH-------------------DPQEEVKNSERAVQLMGASLLQLCSVESQSPF 213 (243)
Q Consensus 154 -~~~~~~~~l~~~~~~LkpgG~l~~~~~~-------------------~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 213 (243)
++..+..++..+..+++++|.++...-+ .....+.++.+++...||.+..+..-...+..
T Consensus 152 vSFISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~~ 231 (245)
T COG1189 152 VSFISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGGK 231 (245)
T ss_pred eehhhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCccCCC
Confidence 3567888888899999999887754321 12233455667777889988887653344444
Q ss_pred CceEEEEEEee
Q 026122 214 GQRTAVVCLKS 224 (243)
Q Consensus 214 ~~r~~v~~~k~ 224 (243)
+.....+.-++
T Consensus 232 GNiE~l~~~~k 242 (245)
T COG1189 232 GNIEFLLLLKK 242 (245)
T ss_pred CcEeeeeeeec
Confidence 44455444443
No 254
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.95 E-value=2.6e-06 Score=69.03 Aligned_cols=120 Identities=17% Similarity=0.092 Sum_probs=81.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEE-EccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIV-RGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
+.++||+|+|.|-++..++-.+ .+|++.|.|..|....++ .+. .++ ..+..+. +-+||+|.|-+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~k----k~y---nVl~~~ew~~t------~~k~dli~clN 177 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKK----KNY---NVLTEIEWLQT------DVKLDLILCLN 177 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhh----cCC---ceeeehhhhhc------CceeehHHHHH
Confidence 5799999999999987777443 369999999987665543 222 222 1122221 14699999865
Q ss_pred cc----cHHHHHHHHccCccc-CeEEEEEe--------------------------CCCcHHHHHHHHHHHHHhCCeeeE
Q 026122 155 VA----EMRILAEYCLPLVRV-GGLFVAAK--------------------------GHDPQEEVKNSERAVQLMGASLLQ 203 (243)
Q Consensus 155 ~~----~~~~~l~~~~~~Lkp-gG~l~~~~--------------------------~~~~~~~~~~~~~~l~~~g~~~~~ 203 (243)
+. +.-.+++.++.+|+| +|++++.. |....+++..+.+.++++|+.++.
T Consensus 178 lLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~vea 257 (288)
T KOG3987|consen 178 LLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEA 257 (288)
T ss_pred HHHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhh
Confidence 33 467889999999999 88876421 123355667788889999998877
Q ss_pred EEEEecC
Q 026122 204 LCSVESQ 210 (243)
Q Consensus 204 ~~~~~~~ 210 (243)
-.+..+.
T Consensus 258 wTrlPYL 264 (288)
T KOG3987|consen 258 WTRLPYL 264 (288)
T ss_pred hhcCCee
Confidence 6554443
No 255
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.89 E-value=3.6e-05 Score=65.38 Aligned_cols=90 Identities=21% Similarity=0.110 Sum_probs=69.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
+..++|+|||.|-.. . ..|.+.++|.|++...+.-+++. +. ....+|+..++... .+||.+++.+
T Consensus 46 gsv~~d~gCGngky~---~-~~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~---~s~d~~lsia 111 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYL---G-VNPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFRE---ESFDAALSIA 111 (293)
T ss_pred cceeeecccCCcccC---c-CCCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCC---Cccccchhhh
Confidence 789999999999763 2 23778999999998765554431 23 67788988887653 7899999865
Q ss_pred cc-------cHHHHHHHHccCcccCeEEEEEe
Q 026122 155 VA-------EMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 155 ~~-------~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+. ....+++++.+.|+|||...++.
T Consensus 112 vihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 112 VIHHLSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 32 46889999999999999976654
No 256
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=97.82 E-value=0.00013 Score=61.73 Aligned_cols=127 Identities=12% Similarity=0.246 Sum_probs=93.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
++.|+=+| ---..++++|...-..+|.-||+++..+.+.++.++..|.+|++.+.-|+...-+. .+..+||+.+...
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe-~~~~kFDvfiTDPp 230 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPE-DLKRKFDVFITDPP 230 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChH-HHHhhCCeeecCch
Confidence 77899999 44455666665544468999999999999999999999999999999998874332 2346899999864
Q ss_pred --cccHHHHHHHHccCcccC---eEEEEEeCCCcHHHHHHHHH-HHHHhCCeeeEE
Q 026122 155 --VAEMRILAEYCLPLVRVG---GLFVAAKGHDPQEEVKNSER-AVQLMGASLLQL 204 (243)
Q Consensus 155 --~~~~~~~l~~~~~~Lkpg---G~l~~~~~~~~~~~~~~~~~-~l~~~g~~~~~~ 204 (243)
+..+..++..-...||-- |++.+.........-.++++ +++..|+-+.++
T Consensus 231 eTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvVITdi 286 (354)
T COG1568 231 ETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVVITDI 286 (354)
T ss_pred hhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCeeeHhh
Confidence 334566666656666654 78888776655566666666 677888766554
No 257
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.79 E-value=2.6e-05 Score=71.06 Aligned_cols=95 Identities=17% Similarity=0.118 Sum_probs=55.4
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEe---CCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122 77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLE---SMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD---~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
.++||+|||+|.++..+..+ +..+..+- ..+..+++|. +-|+.- -+-..-...++... +.||+|.|.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfal----eRGvpa-~~~~~~s~rLPfp~---~~fDmvHcs 188 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFAL----ERGVPA-MIGVLGSQRLPFPS---NAFDMVHCS 188 (506)
T ss_pred EEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhh----hcCcch-hhhhhccccccCCc---cchhhhhcc
Confidence 46899999999998777644 33333333 3333333332 234431 11111223455543 789999984
Q ss_pred C-cc----cHHHHHHHHccCcccCeEEEEEeCC
Q 026122 154 A-VA----EMRILAEYCLPLVRVGGLFVAAKGH 181 (243)
Q Consensus 154 ~-~~----~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (243)
. .. .-.-++-++-|+|+|||+++....+
T Consensus 189 rc~i~W~~~~g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 189 RCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred cccccchhcccceeehhhhhhccCceEEecCCc
Confidence 2 11 1234666789999999998876643
No 258
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.69 E-value=0.0002 Score=62.66 Aligned_cols=93 Identities=16% Similarity=0.076 Sum_probs=70.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
-...+|+|.|.|..+-.+...+|. |-+++.+...+..++.... ..|+.+-+|..+-. .+-|+|++.-
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~----~gV~~v~gdmfq~~------P~~daI~mkWi 245 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA----PGVEHVAGDMFQDT------PKGDAIWMKWI 245 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc----CCcceecccccccC------CCcCeEEEEee
Confidence 468999999999998777777774 7788888776655554443 33778888876642 3467999842
Q ss_pred -----cccHHHHHHHHccCcccCeEEEEEeC
Q 026122 155 -----VAEMRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 155 -----~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
..+..++++.|+..|+|||.+++.+.
T Consensus 246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred cccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 23689999999999999999998764
No 259
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00088 Score=59.00 Aligned_cols=128 Identities=19% Similarity=0.152 Sum_probs=85.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHC-C---CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC------
Q 026122 72 SCNSNLKLVDVGTGAGLPGLVLAIAC-P---DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV------ 141 (243)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~la~~~-~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~------ 141 (243)
.++++.+|||+++-+|.-++.+.+.. . ...|++=|.+...+.+......+..-.++.+.+.|+..++...
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 35689999999999999876665442 1 2489999999999988888876666556666666666554321
Q ss_pred cCCCCceEEEEcC--------------------------cc-cHHHHHHHHccCcccCeEEEEEeCC-CcHHHHHHHHHH
Q 026122 142 SFREQYDVAVARA--------------------------VA-EMRILAEYCLPLVRVGGLFVAAKGH-DPQEEVKNSERA 193 (243)
Q Consensus 142 ~~~~~fD~I~~~~--------------------------~~-~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~~~ 193 (243)
.....||-|++.. .. -.-.++....++||+||+++..... +..+.-.-..++
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~ 311 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEA 311 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHH
Confidence 0114699999841 00 1356778888999999999987743 222222223455
Q ss_pred HHHhCC
Q 026122 194 VQLMGA 199 (243)
Q Consensus 194 l~~~g~ 199 (243)
+++.|-
T Consensus 312 L~~~~~ 317 (375)
T KOG2198|consen 312 LQKVGG 317 (375)
T ss_pred HHHhcC
Confidence 556553
No 260
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.54 E-value=0.0004 Score=58.29 Aligned_cols=77 Identities=13% Similarity=0.057 Sum_probs=54.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122 72 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
.++...+|+|||||-=-+++......++..++|+|++..++++.......++.. .++...|+..-... ...|+.+
T Consensus 102 ~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~-~~~~v~Dl~~~~~~----~~~DlaL 176 (251)
T PF07091_consen 102 RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP-HDARVRDLLSDPPK----EPADLAL 176 (251)
T ss_dssp CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C-EEEEEE-TTTSHTT----SEESEEE
T ss_pred cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC-cceeEeeeeccCCC----CCcchhh
Confidence 345578999999998877665555556789999999999999999999999874 66666677654332 5689998
Q ss_pred Ec
Q 026122 152 AR 153 (243)
Q Consensus 152 ~~ 153 (243)
.-
T Consensus 177 ll 178 (251)
T PF07091_consen 177 LL 178 (251)
T ss_dssp EE
T ss_pred HH
Confidence 74
No 261
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.53 E-value=0.00022 Score=63.97 Aligned_cols=72 Identities=21% Similarity=0.273 Sum_probs=58.4
Q ss_pred eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE
Q 026122 78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
.|||||+|||.+++..++.. +-.|+++|.-..|.+.|++...++|.. +|++++.+..+....+. ...|+++.
T Consensus 69 ~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~--~RadI~v~ 141 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGS--SRADIAVR 141 (636)
T ss_pred EEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCc--chhhhhhH
Confidence 68999999999997777664 558999999999999999999999986 59999988887654321 23666655
No 262
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00032 Score=61.34 Aligned_cols=123 Identities=15% Similarity=0.148 Sum_probs=73.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDW-KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
..+|||+|.|+|.-..++-..+|+. .++.++.|+..-+......+........+..+|+..-.......+.|++++...
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 5679999999998866666667874 688899998654444444333332222233333322111101125688887642
Q ss_pred -------cccHHHHHHHHccCcccCeEEEEEeCCC--cHHHHHHHHHHHHHhC
Q 026122 155 -------VAEMRILAEYCLPLVRVGGLFVAAKGHD--PQEEVKNSERAVQLMG 198 (243)
Q Consensus 155 -------~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~l~~~g 198 (243)
--++...++.++.++.|||.+++++... .-+.+....+.+-+.|
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~ll~~~ 246 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQILLAPG 246 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHHHhcCC
Confidence 1245668899999999999999988432 2334455554443333
No 263
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.44 E-value=0.00017 Score=62.64 Aligned_cols=77 Identities=10% Similarity=0.000 Sum_probs=54.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc---CCCCceEEE
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS---FREQYDVAV 151 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~~fD~I~ 151 (243)
++..++|.=-|.|..+..+....+.++|+|+|.++.+++.+++..+.. -.++.+++++..++..... ...++|.|+
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL 98 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELNGINKVDGIL 98 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTTTTS-EEEEE
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHccCCCccCEEE
Confidence 478999999999999988888888899999999999998887765544 2359999999887643211 125799998
Q ss_pred E
Q 026122 152 A 152 (243)
Q Consensus 152 ~ 152 (243)
.
T Consensus 99 ~ 99 (310)
T PF01795_consen 99 F 99 (310)
T ss_dssp E
T ss_pred E
Confidence 8
No 264
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.42 E-value=0.0039 Score=50.37 Aligned_cols=147 Identities=15% Similarity=0.133 Sum_probs=90.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHH----H--HHHHHHHHcCCCCEEEEEccccccccCCcCCC
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRC----V--FLEHAVSLTQLLNVQIVRGRAETLGKDVSFRE 145 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~----~--~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 145 (243)
++++.+|+|+=-|.|..+..++... |.+.|++.=..+... + ..+...+.-...|++.+-.+...+... +
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~p----q 121 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAP----Q 121 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCC----C
Confidence 4679999999999999998888654 567888887654311 1 111122222334666666666655422 5
Q ss_pred CceEEEEcC-----------cccHHHHHHHHccCcccCeEEEEEeC-----CCcHHH-------HHHHHHHHHHhCCeee
Q 026122 146 QYDVAVARA-----------VAEMRILAEYCLPLVRVGGLFVAAKG-----HDPQEE-------VKNSERAVQLMGASLL 202 (243)
Q Consensus 146 ~fD~I~~~~-----------~~~~~~~l~~~~~~LkpgG~l~~~~~-----~~~~~~-------~~~~~~~l~~~g~~~~ 202 (243)
..|+++.+. ......+...+++.|||||.+.++.- ...... ........++.||.+.
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~ 201 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLE 201 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceee
Confidence 567766532 22468888899999999999888762 111111 1234556678999888
Q ss_pred EEEEEecCCCCCceEEEEEEee
Q 026122 203 QLCSVESQSPFGQRTAVVCLKS 224 (243)
Q Consensus 203 ~~~~~~~~~~~~~r~~v~~~k~ 224 (243)
....+.....+ .+.+-++...
T Consensus 202 aeS~ilaNp~D-~~~i~v~dp~ 222 (238)
T COG4798 202 AESEILANPDD-PRGIWVFDPT 222 (238)
T ss_pred eeehhhcCCCC-CCceeecCcc
Confidence 77665544333 3444444433
No 265
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.40 E-value=0.0043 Score=52.29 Aligned_cols=102 Identities=17% Similarity=0.121 Sum_probs=63.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CC-CEEEEEccccccccCCcCCCC-ce
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-----LL-NVQIVRGRAETLGKDVSFREQ-YD 148 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~-~v~~~~~d~~~~~~~~~~~~~-fD 148 (243)
..+||++|+|+|..++..|.. ..++|+..|...- ++..+.+...++ .. ++.+..-++.+.......... +|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~-~~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALL-LGAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHH-hcceeccCCchhh-HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 457999999999999888865 4689999998653 333444433222 11 244443343332211111234 89
Q ss_pred EEEEcC----cccHHHHHHHHccCcccCeEEEEEe
Q 026122 149 VAVARA----VAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 149 ~I~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+|++.. ....+.++..+...|..+|.+++..
T Consensus 165 lilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 165 LILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 999864 3356777888888888888655544
No 266
>PHA01634 hypothetical protein
Probab=97.40 E-value=0.0011 Score=49.92 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=53.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
+.+|+|||++.|..++.++.. ++.+|+++|.++...+..+++++.+.+-+=-+...++.. . -+.||+..+..
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~---~---Y~~~Di~~iDC 100 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNG---E---YEDVDIFVMDC 100 (156)
T ss_pred CCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccc---c---CCCcceEEEEc
Confidence 789999999999999999966 567999999999999999998887654221122222222 1 26799888754
No 267
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.38 E-value=0.001 Score=58.51 Aligned_cols=95 Identities=17% Similarity=0.171 Sum_probs=65.5
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc-ccccccCCcCCCCceE
Q 026122 72 SCNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-AETLGKDVSFREQYDV 149 (243)
Q Consensus 72 ~~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~~fD~ 149 (243)
.++++.+|+=+|+| -|..++.+|+... ++|+++|.+++..+.|++. |-+ .++... ....... .+.||+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l----GAd--~~i~~~~~~~~~~~---~~~~d~ 232 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL----GAD--HVINSSDSDALEAV---KEIADA 232 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh----CCc--EEEEcCCchhhHHh---HhhCcE
Confidence 46779999999998 3346778887654 8999999999977777654 432 344433 2222111 134999
Q ss_pred EEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 150 AVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
|+.... ...++...+.|++||++++.-
T Consensus 233 ii~tv~---~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 233 IIDTVG---PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred EEECCC---hhhHHHHHHHHhcCCEEEEEC
Confidence 998654 556677778999999988654
No 268
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.38 E-value=0.00074 Score=55.90 Aligned_cols=130 Identities=15% Similarity=0.121 Sum_probs=81.7
Q ss_pred hHHHHHH--HHHHHHHHHHHhccCC-ccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHH
Q 026122 14 FMFMFFY--LGLFLKKRKQNLQKMN-LTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPG 90 (243)
Q Consensus 14 ~~~~~~~--l~~~~~~~~~~n~~~n-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~ 90 (243)
+.+++++ |.+||. +..|..--+ ++.+..-+..|.+|+.|-+.-..-- ...+..++||||.|.-++=
T Consensus 25 AVk~LnKAlL~~fY~-v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~----------~~~~~i~~LDIGvGAnCIY 93 (292)
T COG3129 25 AVKALNKALLAHFYA-VRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQ----------IPGKNIRILDIGVGANCIY 93 (292)
T ss_pred HHHHHHHHHHHHhcc-eeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCC----------CCcCceEEEeeccCccccc
Confidence 4456666 455554 344554333 4666666677888888866443211 1134678999999987652
Q ss_pred HHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-CCCC-EEEEEccccccccCC--cCCCCceEEEEcC
Q 026122 91 LVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-QLLN-VQIVRGRAETLGKDV--SFREQYDVAVARA 154 (243)
Q Consensus 91 ~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~-v~~~~~d~~~~~~~~--~~~~~fD~I~~~~ 154 (243)
=.+...--+++.+|.|+++..++.|+.++..+ ++.+ ++++...-.+..+.. ...+.||+.+||.
T Consensus 94 PliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNP 161 (292)
T COG3129 94 PLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNP 161 (292)
T ss_pred ccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEecCC
Confidence 12222223689999999999999999999988 6654 776654333222211 1136799999973
No 269
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.37 E-value=0.002 Score=62.16 Aligned_cols=135 Identities=17% Similarity=0.125 Sum_probs=87.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHC-------C-----CCEEEEEeCCH---HHHH-----------HHHHHHHH-----cCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC-------P-----DWKVTLLESMN---KRCV-----------FLEHAVSL-----TQL 124 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~-------~-----~~~v~~vD~s~---~~~~-----------~a~~~~~~-----~~~ 124 (243)
.-+|+|+|-|+|.+.+...+.. | ..+++++|..+ +.+. .+++..+. .|+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3589999999999876655433 2 35899999644 2221 12222211 122
Q ss_pred -------C--CEEEEEccccccccCCcCCCCceEEEEcCccc-------HHHHHHHHccCcccCeEEEEEeCCCcHHHHH
Q 026122 125 -------L--NVQIVRGRAETLGKDVSFREQYDVAVARAVAE-------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVK 188 (243)
Q Consensus 125 -------~--~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 188 (243)
. .+++..+|+.+..... ...+|+++..++++ -+++++.+.++++|||.+.-... ..
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~--~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~------a~ 209 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQL--DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS------AG 209 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhc--cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh------HH
Confidence 1 2567788887754321 25699999986442 28899999999999999876543 24
Q ss_pred HHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEe
Q 026122 189 NSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK 223 (243)
Q Consensus 189 ~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k 223 (243)
.++..|..+||.+... +.....|.+.....
T Consensus 210 ~vr~~l~~~GF~v~~~-----~~~g~kr~~~~~~~ 239 (662)
T PRK01747 210 FVRRGLQEAGFTVRKV-----KGFGRKREMLVGEL 239 (662)
T ss_pred HHHHHHHHcCCeeeec-----CCCchhhhhhhehh
Confidence 4577888999987644 34445565555543
No 270
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.33 E-value=0.0044 Score=53.29 Aligned_cols=135 Identities=13% Similarity=0.094 Sum_probs=81.9
Q ss_pred eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC---
Q 026122 78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--- 154 (243)
Q Consensus 78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~--- 154 (243)
+|+|+.||.|.++..+... +-..|.++|+++.+++..+.|... .++++|+.++.... ....+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~------~~~~~Di~~~~~~~-~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKD-FIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCC------CCccCccccCchhh-cCCCCCEEEeCCCCh
Confidence 6899999999987666654 234678999999988877776531 26677888775431 125699999841
Q ss_pred ----------cc-c----HHHHHHHHccCcccCeEEEEEeCC------CcHHHHHHHHHHHHHhCCeeeEEEEEec--CC
Q 026122 155 ----------VA-E----MRILAEYCLPLVRVGGLFVAAKGH------DPQEEVKNSERAVQLMGASLLQLCSVES--QS 211 (243)
Q Consensus 155 ----------~~-~----~~~~l~~~~~~LkpgG~l~~~~~~------~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~~ 211 (243)
.. . +..+++ +.+.++|. ++++++. ........+.+.++..|+.+... -+.. -+
T Consensus 74 ~fS~ag~~~~~~d~r~~L~~~~~~-~i~~~~P~--~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~-~l~a~~~G 149 (275)
T cd00315 74 PFSIAGKRKGFEDTRGTLFFEIIR-ILKEKKPK--YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWK-LLNASDYG 149 (275)
T ss_pred hhhHHhhcCCCCCchHHHHHHHHH-HHHhcCCC--EEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEE-EEEHHHcC
Confidence 11 1 223333 22344664 4444432 12455777888899999976432 2232 12
Q ss_pred C--CCceEEEEEEee
Q 026122 212 P--FGQRTAVVCLKS 224 (243)
Q Consensus 212 ~--~~~r~~v~~~k~ 224 (243)
. ...|.+++..+.
T Consensus 150 vPQ~R~R~~~ia~~~ 164 (275)
T cd00315 150 VPQNRERVFIIGIRK 164 (275)
T ss_pred CCCCCcEEEEEEEeC
Confidence 2 235666665554
No 271
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.29 E-value=0.0073 Score=51.42 Aligned_cols=123 Identities=12% Similarity=0.075 Sum_probs=70.7
Q ss_pred CeEEEEcCCCC--hHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC---cCCCCce--
Q 026122 77 LKLVDVGTGAG--LPGLVLAI-ACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV---SFREQYD-- 148 (243)
Q Consensus 77 ~~VLDiGcG~G--~~~~~la~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~~~fD-- 148 (243)
...||||||-= .+.-..|+ ..|+++|+-||.++-.+.+++.......-....++++|+.+..... ...+-+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 47999999932 23334444 3689999999999999998888776554223889999988743210 0011222
Q ss_pred ---EEEEcC-------cccHHHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCC
Q 026122 149 ---VAVARA-------VAEMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGA 199 (243)
Q Consensus 149 ---~I~~~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~ 199 (243)
.+++.+ ..+...++......|.||.+|++.+.. ...+....+...++..+-
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~ 212 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGS 212 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS
T ss_pred CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCC
Confidence 333333 236899999999999999999998732 233444555555555543
No 272
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.27 E-value=0.0044 Score=53.36 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=61.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC--cCCCCceEE
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV--SFREQYDVA 150 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~~~fD~I 150 (243)
+++...+|.=-|.|..+..+...++. ++++|+|.++.+++.|++....++ .++.+++++..++.... ....++|-|
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~i~~vDGi 100 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELGIGKVDGI 100 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcCCCceeEE
Confidence 34789999999999998888877764 579999999999999999888766 46999999877754321 001467888
Q ss_pred EE
Q 026122 151 VA 152 (243)
Q Consensus 151 ~~ 152 (243)
+.
T Consensus 101 L~ 102 (314)
T COG0275 101 LL 102 (314)
T ss_pred EE
Confidence 76
No 273
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.25 E-value=0.00089 Score=54.80 Aligned_cols=102 Identities=12% Similarity=0.089 Sum_probs=57.7
Q ss_pred CCeEEEEcCCCChHHHHHHHH---C-CCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCc---C--CC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIA---C-PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVS---F--RE 145 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~---~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~---~--~~ 145 (243)
++.|+++|.-.|.-++..|.. . +.++|+|||++-.. ..+...+.+.+ ++|++++||..+...... . ..
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~--~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRP--HNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcch--hchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 789999999999988777753 2 67899999996431 12333333344 469999999876432110 1 13
Q ss_pred CceEEEEcCc---ccHHHHHHHHccCcccCeEEEEEe
Q 026122 146 QYDVAVARAV---AEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 146 ~fD~I~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
...+|+-.+. ......++....++++|+++++..
T Consensus 111 ~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 111 HPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred CceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 4557776654 567777788899999999988753
No 274
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.13 E-value=0.0045 Score=56.72 Aligned_cols=155 Identities=15% Similarity=0.218 Sum_probs=84.8
Q ss_pred hHHHHHHhHhhhcccCC-CcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHH
Q 026122 43 VNEVMERHIDDSLAIIP-PIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDW--KVTLLESMNKRCVFLEHAV 119 (243)
Q Consensus 43 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~--~v~~vD~s~~~~~~a~~~~ 119 (243)
-.+.|++.+-.+..+.. .+.. ..-..|+|..+|.|.++.+|.. .|-+ .|+-++-. . .-..+
T Consensus 342 Dt~~Wk~~V~~Y~~l~~~~i~~----------~~iRNVMDMnAg~GGFAAAL~~-~~VWVMNVVP~~~~-n----tL~vI 405 (506)
T PF03141_consen 342 DTKHWKKRVSHYKKLLGLAIKW----------GRIRNVMDMNAGYGGFAAALID-DPVWVMNVVPVSGP-N----TLPVI 405 (506)
T ss_pred HHHHHHHHHHHHHHhhcccccc----------cceeeeeeecccccHHHHHhcc-CCceEEEecccCCC-C----cchhh
Confidence 34577777665553333 2211 1134799999999988766653 2322 23333211 1 11112
Q ss_pred HHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc-------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHH
Q 026122 120 SLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV-------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSER 192 (243)
Q Consensus 120 ~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 192 (243)
-..|+ |-+.+.=.+.++. ++.+||+|.++.+ .+++.++-++-|.|+|||.+++-.. ..-+.++..
T Consensus 406 ydRGL--IG~yhDWCE~fsT---YPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~---~~vl~~v~~ 477 (506)
T PF03141_consen 406 YDRGL--IGVYHDWCEAFST---YPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT---VDVLEKVKK 477 (506)
T ss_pred hhccc--chhccchhhccCC---CCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc---HHHHHHHHH
Confidence 22233 2233322333433 3488999999752 2578889999999999999999544 445555555
Q ss_pred HHHHhCCeeeEEEEEecCCCCCceEEEEEEe
Q 026122 193 AVQLMGASLLQLCSVESQSPFGQRTAVVCLK 223 (243)
Q Consensus 193 ~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k 223 (243)
.++...++..... ...+......+.+++|
T Consensus 478 i~~~lrW~~~~~d--~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 478 IAKSLRWEVRIHD--TEDGPDGPEKILICQK 506 (506)
T ss_pred HHHhCcceEEEEe--cCCCCCCCceEEEEEC
Confidence 5556666554322 1223333444545443
No 275
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.00037 Score=63.38 Aligned_cols=106 Identities=18% Similarity=0.217 Sum_probs=88.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCC-cCCCCceEE
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDV-SFREQYDVA 150 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~-~~~~~fD~I 150 (243)
.++-+|||.=|+||.-++..|...++ .+|++-|.++.+++..++|++.++..+ ++....|+.-+-... .....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 34678999999999999999998877 489999999999999999999998765 788888876643221 112579999
Q ss_pred EEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 151 VARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
=.........+++.+.+.++.||.|++..
T Consensus 188 DLDPyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 188 DLDPYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ecCCCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 99888888999999999999999998754
No 276
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.0024 Score=49.31 Aligned_cols=98 Identities=18% Similarity=0.055 Sum_probs=71.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE-c
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA-R 153 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~-~ 153 (243)
..+.+|+|+|.|.+-+..++.. ...-+|+|+++-.+.+++-.+-+.|+. ...|...|+...... .|..++. .
T Consensus 73 ~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~-----dy~~vviFg 146 (199)
T KOG4058|consen 73 KGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR-----DYRNVVIFG 146 (199)
T ss_pred CCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc-----ccceEEEee
Confidence 5789999999999977777553 467899999999999999998888885 488999998887653 3444443 3
Q ss_pred CcccHHHHHHHHccCcccCeEEEEEe
Q 026122 154 AVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 154 ~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+-.-+..+-.++..-+..+.+++...
T Consensus 147 aes~m~dLe~KL~~E~p~nt~vvacR 172 (199)
T KOG4058|consen 147 AESVMPDLEDKLRTELPANTRVVACR 172 (199)
T ss_pred hHHHHhhhHHHHHhhCcCCCeEEEEe
Confidence 33334455556666777787776544
No 277
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.04 E-value=0.015 Score=54.20 Aligned_cols=104 Identities=14% Similarity=0.079 Sum_probs=75.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCC--cCCCCce
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACP----DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDV--SFREQYD 148 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~--~~~~~fD 148 (243)
..+|.|-.||+|.+.+..+.... ...++|.|+++.....++-+.--+|+. ++....+|-..-+... .....||
T Consensus 187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D 266 (489)
T COG0286 187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFD 266 (489)
T ss_pred CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCcccee
Confidence 66999999999988655554432 377999999999999999999888886 3566666654433221 1125799
Q ss_pred EEEEcC----------c-------------------ccHHHHHHHHccCcccCeEEEEEe
Q 026122 149 VAVARA----------V-------------------AEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 149 ~I~~~~----------~-------------------~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+|++|. . .....+++.+...|+|||+..++.
T Consensus 267 ~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 267 FVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred EEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 999961 0 013678899999999988766554
No 278
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.92 E-value=0.0058 Score=55.77 Aligned_cols=97 Identities=14% Similarity=0.203 Sum_probs=70.1
Q ss_pred eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC---
Q 026122 78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--- 154 (243)
Q Consensus 78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~--- 154 (243)
+++-+|||.-.+...+-.. +-..|+.+|+|+-.++.....-. ..-.-.++...|+..+...+ ++||+|+.-+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fed---ESFdiVIdkGtlD 125 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFED---ESFDIVIDKGTLD 125 (482)
T ss_pred eeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCC---cceeEEEecCccc
Confidence 8999999999776544432 34579999999987765543321 11123789999999887764 7899999843
Q ss_pred --------c---ccHHHHHHHHccCcccCeEEEEEe
Q 026122 155 --------V---AEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 155 --------~---~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
. ......+..+.+++++||+++.+.
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 1 134667788999999999977555
No 279
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.87 E-value=0.038 Score=47.96 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=76.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EE--------------------------
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQ-------------------------- 128 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~-------------------------- 128 (243)
..+||-=|||.|.++..+|...+ ++-|=|.|--|+-...=.+.....+| +.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 56899999999999999997754 44555887766543222221111111 11
Q ss_pred -------------EEEccccccccCCcCCCCceEEEEc----CcccHHHHHHHHccCcccCeEEEEEeCC---------C
Q 026122 129 -------------IVRGRAETLGKDVSFREQYDVAVAR----AVAEMRILAEYCLPLVRVGGLFVAAKGH---------D 182 (243)
Q Consensus 129 -------------~~~~d~~~~~~~~~~~~~fD~I~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------~ 182 (243)
...||..+.-......+.||+|+.. ...+.-+.++.+...|||||..+ -.|+ .
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWi-NlGPLlYHF~d~~g 307 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWI-NLGPLLYHFEDTHG 307 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEE-eccceeeeccCCCC
Confidence 1112332222211112468988864 24468889999999999999955 2111 1
Q ss_pred ------cHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122 183 ------PQEEVKNSERAVQLMGASLLQLCSVE 208 (243)
Q Consensus 183 ------~~~~~~~~~~~l~~~g~~~~~~~~~~ 208 (243)
..-...++....+..||.+++.+.+.
T Consensus 308 ~~~~~siEls~edl~~v~~~~GF~~~ke~~Id 339 (369)
T KOG2798|consen 308 VENEMSIELSLEDLKRVASHRGFEVEKERGID 339 (369)
T ss_pred CcccccccccHHHHHHHHHhcCcEEEEeeeee
Confidence 11123455666678899988776544
No 280
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.68 E-value=0.0076 Score=54.14 Aligned_cols=103 Identities=14% Similarity=0.051 Sum_probs=65.2
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc-ccc-cccCCcCCCCceE
Q 026122 73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-AET-LGKDVSFREQYDV 149 (243)
Q Consensus 73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-~~~-~~~~~~~~~~fD~ 149 (243)
+.++.+||.+|||+ |..++.+|+..+..+|+++|.+++..+.+++.. +...+.....+ ..+ +... .....+|+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~~-~~~~~~D~ 257 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALREL-TGGRGPDV 257 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHHH-cCCCCCCE
Confidence 34588999999987 888888888875457999999998877776541 22111111111 111 1000 00136999
Q ss_pred EEEcCcc-------------------cHHHHHHHHccCcccCeEEEEEe
Q 026122 150 AVARAVA-------------------EMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 150 I~~~~~~-------------------~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
|+-.... +....++.+.+.++++|.++...
T Consensus 258 vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 258 CIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 9874311 12456788889999999988764
No 281
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.64 E-value=0.0083 Score=49.72 Aligned_cols=97 Identities=21% Similarity=0.297 Sum_probs=65.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHC----C-C----CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC----c
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC----P-D----WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV----S 142 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~----~-~----~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~----~ 142 (243)
-.+|+|+++-+|..+..+++.. + . .+|++||+.+- ..+..|.-+++|+....-.. .
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHH
Confidence 4699999999999998888753 1 1 13999999762 23456788889987643110 0
Q ss_pred C-CCCceEEEEcC------cccH---------HHHHHHHccCcccCeEEEE--EeCCCc
Q 026122 143 F-REQYDVAVARA------VAEM---------RILAEYCLPLVRVGGLFVA--AKGHDP 183 (243)
Q Consensus 143 ~-~~~fD~I~~~~------~~~~---------~~~l~~~~~~LkpgG~l~~--~~~~~~ 183 (243)
+ .++.|+|+|.+ +.++ ...+.....+|||||.|+. ..|...
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~t 169 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDT 169 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCch
Confidence 1 25899999965 2232 3344556689999999884 335444
No 282
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.61 E-value=0.0011 Score=56.74 Aligned_cols=101 Identities=12% Similarity=0.046 Sum_probs=72.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEc
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
.+..|+|+-+|-|+.++...-...+..|+|+|.++..++..+++++.++... ..++.+|-....+. ...|-|...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~----~~AdrVnLG 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPR----LRADRVNLG 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCcc----ccchheeec
Confidence 3678999999999998733334456799999999999999999999887643 55666666654432 568888876
Q ss_pred CcccHHHHHHHHccCcccCeE-EEEEe
Q 026122 154 AVAEMRILAEYCLPLVRVGGL-FVAAK 179 (243)
Q Consensus 154 ~~~~~~~~l~~~~~~LkpgG~-l~~~~ 179 (243)
-.+.-+.-+-.+.+.|||.|- ++-++
T Consensus 270 LlPSse~~W~~A~k~Lk~eggsilHIH 296 (351)
T KOG1227|consen 270 LLPSSEQGWPTAIKALKPEGGSILHIH 296 (351)
T ss_pred cccccccchHHHHHHhhhcCCcEEEEe
Confidence 655445555556667877544 44333
No 283
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.45 E-value=0.044 Score=47.60 Aligned_cols=135 Identities=14% Similarity=0.157 Sum_probs=80.4
Q ss_pred eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC---
Q 026122 78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--- 154 (243)
Q Consensus 78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~--- 154 (243)
+++|+-||.|.+++.+.+.. --.|.++|+++.+.+.-+.|.. ....+|+.++.... +++.+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~-l~~~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSD-LPKDVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHH-HHHT-SEEEEE---T
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc-------cccccccccccccc-ccccceEEEeccCCc
Confidence 79999999998876666542 2368999999998877777654 78888998876431 112599999731
Q ss_pred ----------ccc-----HHHHHHHHccCcccCeEEEEEe--C---CCcHHHHHHHHHHHHHhCCeeeEEEEEec--CCC
Q 026122 155 ----------VAE-----MRILAEYCLPLVRVGGLFVAAK--G---HDPQEEVKNSERAVQLMGASLLQLCSVES--QSP 212 (243)
Q Consensus 155 ----------~~~-----~~~~l~~~~~~LkpgG~l~~~~--~---~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~~~ 212 (243)
..+ +..+++. .+.++|. .++++. + ......+..+.+.++..|+.+.. .-+.. -+.
T Consensus 73 ~fS~ag~~~~~~d~r~~L~~~~~~~-v~~~~Pk-~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~-~vlna~~yGv 149 (335)
T PF00145_consen 73 GFSIAGKRKGFDDPRNSLFFEFLRI-VKELKPK-YFLLENVPGLLSSKNGEVFKEILEELEELGYNVQW-RVLNAADYGV 149 (335)
T ss_dssp TTSTTSTHHCCCCHTTSHHHHHHHH-HHHHS-S-EEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEE-EEEEGGGGTS
T ss_pred eEeccccccccccccchhhHHHHHH-Hhhccce-EEEecccceeeccccccccccccccccccceeehh-ccccHhhCCC
Confidence 111 2333332 2345674 334433 1 12234577888889999987643 22332 122
Q ss_pred CC--ceEEEEEEee
Q 026122 213 FG--QRTAVVCLKS 224 (243)
Q Consensus 213 ~~--~r~~v~~~k~ 224 (243)
+- .|.+++..+.
T Consensus 150 PQ~R~R~fivg~r~ 163 (335)
T PF00145_consen 150 PQNRERVFIVGIRK 163 (335)
T ss_dssp SBE-EEEEEEEEEG
T ss_pred CCceeeEEEEEECC
Confidence 22 5666555554
No 284
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.45 E-value=0.094 Score=43.98 Aligned_cols=105 Identities=17% Similarity=0.090 Sum_probs=67.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
++++.+||=+|+++|.---..+.. -|..-|++||.|+..-..+-..+++ -+||-.+..|+.......-+-.-.|+|+
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--RtNiiPIiEDArhP~KYRmlVgmVDvIF 231 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--RTNIIPIIEDARHPAKYRMLVGMVDVIF 231 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--cCCceeeeccCCCchheeeeeeeEEEEe
Confidence 467999999999999864455543 3678999999997543333222222 2467777778776321100013579999
Q ss_pred EcC-cccHHH-HHHHHccCcccCeEEEEEe
Q 026122 152 ARA-VAEMRI-LAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 152 ~~~-~~~~~~-~l~~~~~~LkpgG~l~~~~ 179 (243)
+.- .++... +.-.+.-.||+||.+++..
T Consensus 232 aDvaqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 232 ADVAQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred ccCCCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 863 333333 3346778999999998765
No 285
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=96.40 E-value=0.067 Score=43.99 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=69.3
Q ss_pred CCeEEEEcCCCC----hHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccc-cccccCCcCCCCceE
Q 026122 76 NLKLVDVGTGAG----LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRA-ETLGKDVSFREQYDV 149 (243)
Q Consensus 76 ~~~VLDiGcG~G----~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~-~~~~~~~~~~~~fD~ 149 (243)
...+++++|+.| .+++..|....++++++|-.++......++.....++.+ ++|+.++. +++.... ...|+
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~---~~iDF 118 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL---KGIDF 118 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc---cCCCE
Confidence 457899976644 345555556678899999999988877888888888765 79998884 4443321 56999
Q ss_pred EEEcC-cccHH-HHHHHHccCcccCeEEEEEeCC
Q 026122 150 AVARA-VAEMR-ILAEYCLPLVRVGGLFVAAKGH 181 (243)
Q Consensus 150 I~~~~-~~~~~-~~l~~~~~~LkpgG~l~~~~~~ 181 (243)
++..+ ..+.. ++++.+. +.|.|.+++..+.
T Consensus 119 ~vVDc~~~d~~~~vl~~~~--~~~~GaVVV~~Na 150 (218)
T PF07279_consen 119 VVVDCKREDFAARVLRAAK--LSPRGAVVVCYNA 150 (218)
T ss_pred EEEeCCchhHHHHHHHHhc--cCCCceEEEEecc
Confidence 99865 33455 6666433 5566776765543
No 286
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.35 E-value=0.12 Score=44.50 Aligned_cols=107 Identities=14% Similarity=0.071 Sum_probs=78.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc--CC--CCEEEEEccccccccCCcCCCCc
Q 026122 72 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--QL--LNVQIVRGRAETLGKDVSFREQY 147 (243)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~v~~~~~d~~~~~~~~~~~~~f 147 (243)
.+...++||=||-|-|......++...=.+++.+|++...++..++..... |. +++.++.||...+-... ..++|
T Consensus 118 s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~-~~~~~ 196 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL-KENPF 196 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh-ccCCc
Confidence 345578999999999988666665422258999999999998888876653 33 35999999876653321 13789
Q ss_pred eEEEEcCc---c-----cHHHHHHHHccCcccCeEEEEEe
Q 026122 148 DVAVARAV---A-----EMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 148 D~I~~~~~---~-----~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
|+|+.... . -.+.+++.+.+.||+||.++...
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 99998531 1 24778888999999999987755
No 287
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.34 E-value=0.023 Score=50.02 Aligned_cols=96 Identities=10% Similarity=0.114 Sum_probs=58.0
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEccccccccCCcCCCCceEEEE
Q 026122 75 SNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 75 ~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
++.+||=+||| .|..++.+|+.....+|+++|.+++.++.++ ++|...+ .....+..+.... .+.+|+|+-
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~~~~~~~~---~g~~D~vid 241 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR----EMGADKLVNPQNDDLDHYKAE---KGYFDVSFE 241 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH----HcCCcEEecCCcccHHHHhcc---CCCCCEEEE
Confidence 37889888875 3445566666654347999999998776654 3554321 1111122222111 145999986
Q ss_pred cCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 153 RAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
..-. ...++.+.+.|++||+++..-
T Consensus 242 ~~G~--~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 242 VSGH--PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred CCCC--HHHHHHHHHHhhcCCEEEEEc
Confidence 5322 234566778899999988654
No 288
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.33 E-value=0.014 Score=47.99 Aligned_cols=102 Identities=13% Similarity=0.036 Sum_probs=62.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHc-------------------------------
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPD--WKVTLLESMNKRCVFLEHAVSLT------------------------------- 122 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~------------------------------- 122 (243)
+-++.|-+||+|.+.-.+...+++ ..|+|-|+++++++.|++|..-+
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA 131 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESA 131 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 568999999999998778877755 48999999999999998886310
Q ss_pred -----------CCCCEEEEEccccccccCC--cCCCCceEEEEcC-------------cccHHHHHHHHccCcccCeEEE
Q 026122 123 -----------QLLNVQIVRGRAETLGKDV--SFREQYDVAVARA-------------VAEMRILAEYCLPLVRVGGLFV 176 (243)
Q Consensus 123 -----------~~~~v~~~~~d~~~~~~~~--~~~~~fD~I~~~~-------------~~~~~~~l~~~~~~LkpgG~l~ 176 (243)
+.....+.+.|+.+..... ......|+|+..- ......+++.+.+.|-.++.+.
T Consensus 132 ~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~ 211 (246)
T PF11599_consen 132 DRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVA 211 (246)
T ss_dssp HHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEE
T ss_pred HHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEE
Confidence 1112457777777632100 1113469999841 1246889999999994444444
Q ss_pred E
Q 026122 177 A 177 (243)
Q Consensus 177 ~ 177 (243)
+
T Consensus 212 v 212 (246)
T PF11599_consen 212 V 212 (246)
T ss_dssp E
T ss_pred E
Confidence 4
No 289
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.32 E-value=0.02 Score=49.82 Aligned_cols=102 Identities=17% Similarity=0.150 Sum_probs=67.9
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc-c-cccc---ccCCcCCC
Q 026122 72 SCNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-R-AETL---GKDVSFRE 145 (243)
Q Consensus 72 ~~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d-~~~~---~~~~~~~~ 145 (243)
.++.+.+||=+|+| .|..++..|+..+..+|+.+|.++..++.|++ +|.+.+..... + ..++ ........
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~ 241 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELVEKALGKK 241 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHHHhhcccc
Confidence 45679999999999 57788888999988999999999998888876 45432222211 1 1111 11000013
Q ss_pred CceEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 146 QYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 146 ~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
.+|+.+.-. ..+..++.+...++.||.+++..
T Consensus 242 ~~d~~~dCs--G~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 242 QPDVTFDCS--GAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred CCCeEEEcc--CchHHHHHHHHHhccCCEEEEec
Confidence 489988643 23455666777899999965543
No 290
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.23 E-value=0.0063 Score=53.28 Aligned_cols=104 Identities=11% Similarity=-0.050 Sum_probs=77.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHH-------HHHHHHHHcCCCC--EEEEEccccccccCCcC
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCV-------FLEHAVSLTQLLN--VQIVRGRAETLGKDVSF 143 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~-------~a~~~~~~~~~~~--v~~~~~d~~~~~~~~~~ 143 (243)
.++|+-|.|=-.|||.+.+..|. -++.|+|.|++-.++. ..+.|.++.|... +.++.+|....+...
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~--FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs-- 281 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAH--FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS-- 281 (421)
T ss_pred cCCCCEEecCccccCceeeehhh--hcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh--
Confidence 46799999999999988655553 3689999999987765 3466777888542 778888887755432
Q ss_pred CCCceEEEEcC-------------------------------------cccHHHHHHHHccCcccCeEEEEEeC
Q 026122 144 REQYDVAVARA-------------------------------------VAEMRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 144 ~~~fD~I~~~~-------------------------------------~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
...||.|+|.. ..-+..++.-..+.|..||++++..+
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 35799999940 00146677778899999999998776
No 291
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.16 E-value=0.021 Score=47.71 Aligned_cols=73 Identities=25% Similarity=0.310 Sum_probs=47.5
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc----CC-----CCEEEEEccccccccCCcCCCCc
Q 026122 77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT----QL-----LNVQIVRGRAETLGKDVSFREQY 147 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~-----~~v~~~~~d~~~~~~~~~~~~~f 147 (243)
.+|||.=+|-|.-++.+|.. +++|+++|.|+-.....+.-.++. .. .+++++++|..++-... .++|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~--~~s~ 152 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQP--DNSF 152 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCH--SS--
T ss_pred CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhc--CCCC
Confidence 48999999999999888865 689999999998887776554332 22 25999999998864421 3789
Q ss_pred eEEEEc
Q 026122 148 DVAVAR 153 (243)
Q Consensus 148 D~I~~~ 153 (243)
|+|+..
T Consensus 153 DVVY~D 158 (234)
T PF04445_consen 153 DVVYFD 158 (234)
T ss_dssp SEEEE-
T ss_pred CEEEEC
Confidence 999995
No 292
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.15 E-value=0.032 Score=49.60 Aligned_cols=98 Identities=20% Similarity=0.118 Sum_probs=64.4
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc-cc-cccccCCcCCCCceEEEE
Q 026122 76 NLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RA-ETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 76 ~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~-~~~~~~~~~~~~fD~I~~ 152 (243)
+.+|+=+|||+ |.+++.+++..+..+|+.+|.+++.+++|++.. +...+..... +. ...... .....+|+++-
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~---g~~~~~~~~~~~~~~~~~~~-t~g~g~D~vie 244 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG---GADVVVNPSEDDAGAEILEL-TGGRGADVVIE 244 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC---CCeEeecCccccHHHHHHHH-hCCCCCCEEEE
Confidence 45999999994 878888888888899999999999888887632 1110111111 11 111000 00135999995
Q ss_pred cCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 153 RAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
..- ....++.+.+.+++||.+.+.-
T Consensus 245 ~~G--~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 245 AVG--SPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred CCC--CHHHHHHHHHHhcCCCEEEEEe
Confidence 432 3446778888999999988765
No 293
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=96.05 E-value=0.047 Score=48.14 Aligned_cols=92 Identities=11% Similarity=0.112 Sum_probs=56.9
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122 74 NSNLKLVDVGTG-AGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 74 ~~~~~VLDiGcG-~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
.++.+||=+||| .|..++.+++. .++.+|+++|.+++.++.+++ .+. .... .+... ...+|+|+
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~~~~----~~~~~----~~g~d~vi 227 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--TYLI----DDIPE----DLAVDHAF 227 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--eeeh----hhhhh----ccCCcEEE
Confidence 458899999975 23333444544 455789999999988777654 221 1111 11111 12489999
Q ss_pred EcCccc-HHHHHHHHccCcccCeEEEEEe
Q 026122 152 ARAVAE-MRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 152 ~~~~~~-~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
-..-.. ....++.+.+.|++||++++.-
T Consensus 228 D~~G~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 228 ECVGGRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred ECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence 543221 3456777888999999987653
No 294
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.89 E-value=0.035 Score=40.62 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=25.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCH
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMN 109 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~ 109 (243)
....+|||||+|.+.-.|... +.+-.|+|.-.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R~ 90 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSE--GYPGWGIDARR 90 (112)
T ss_pred CCceEEccCCchHHHHHHHhC--CCCcccccccc
Confidence 457999999999987666644 67889999853
No 295
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.83 E-value=0.023 Score=52.45 Aligned_cols=97 Identities=16% Similarity=0.140 Sum_probs=70.6
Q ss_pred CeEEEEcCCCChHHH---HHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEE
Q 026122 77 LKLVDVGTGAGLPGL---VLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~---~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
..|+=+|+|-|-+.- ..|.. ....++++||.++.++...+. .+....+ +|+++.+|+.++..+ ..+.|+++
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap---~eq~DI~V 444 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP---REQADIIV 444 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc---hhhccchH
Confidence 467889999997642 22322 235799999999999988766 3333444 499999999998753 26899999
Q ss_pred EcC---ccc---HHHHHHHHccCcccCeEEEE
Q 026122 152 ARA---VAE---MRILAEYCLPLVRVGGLFVA 177 (243)
Q Consensus 152 ~~~---~~~---~~~~l~~~~~~LkpgG~l~~ 177 (243)
+.- +.+ -.+.+..+.+.|||+|+.+-
T Consensus 445 SELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 445 SELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred HHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 842 111 26677889999999998664
No 296
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.78 E-value=0.065 Score=50.02 Aligned_cols=100 Identities=14% Similarity=0.198 Sum_probs=62.1
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc--------ccccccC-----
Q 026122 75 SNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR--------AETLGKD----- 140 (243)
Q Consensus 75 ~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d--------~~~~~~~----- 140 (243)
++.+|+=+||| .|..++..|+..+ ++|+++|.+++..+.+++ +|.+.+.+-..+ +.+....
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aes----lGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~ 238 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVES----MGAEFLELDFEEEGGSGDGYAKVMSEEFIKAE 238 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH----cCCeEEEeccccccccccchhhhcchhHHHHH
Confidence 48899999999 5667777787764 599999999986665544 454311111100 0000000
Q ss_pred ----CcCCCCceEEEEcCcc----cHHHHHHHHccCcccCeEEEEEe
Q 026122 141 ----VSFREQYDVAVARAVA----EMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 141 ----~~~~~~fD~I~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
......+|+|+..+.. ....+.+++.+.+||||.++.+.
T Consensus 239 ~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 239 MALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 0001359999986532 23333588899999999987654
No 297
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=95.76 E-value=0.022 Score=42.97 Aligned_cols=84 Identities=15% Similarity=0.157 Sum_probs=56.0
Q ss_pred EEEEEccccccccCCcCCCCceEEEEcCccc-------HHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCC
Q 026122 127 VQIVRGRAETLGKDVSFREQYDVAVARAVAE-------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGA 199 (243)
Q Consensus 127 v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~ 199 (243)
+++..+|+.+.... ....+|+|+..+++. -.++++.+.++++|||.+.-.... ..+++.|..+||
T Consensus 33 L~L~~gDa~~~l~~--l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a------~~Vr~~L~~aGF 104 (124)
T PF05430_consen 33 LTLWFGDAREMLPQ--LDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSA------GAVRRALQQAGF 104 (124)
T ss_dssp EEEEES-HHHHHHH--B-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--B------HHHHHHHHHCTE
T ss_pred EEEEEcHHHHHHHh--CcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeech------HHHHHHHHHcCC
Confidence 67888998775432 236899999976431 278999999999999997764442 335677889999
Q ss_pred eeeEEEEEecCCCCCceEEEEEEe
Q 026122 200 SLLQLCSVESQSPFGQRTAVVCLK 223 (243)
Q Consensus 200 ~~~~~~~~~~~~~~~~r~~v~~~k 223 (243)
.+.+. ++..+.|++....|
T Consensus 105 ~v~~~-----~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 105 EVEKV-----PGFGRKREMLRAVK 123 (124)
T ss_dssp EEEEE-----E-STTSSEEEEEEC
T ss_pred EEEEc-----CCCCCcchheEEEc
Confidence 87654 35566788776654
No 298
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.74 E-value=0.12 Score=41.11 Aligned_cols=124 Identities=17% Similarity=0.108 Sum_probs=72.8
Q ss_pred EcCCCChHHHHHHHHCC-CCEEEEE--eCCHHHHHH---HHHHHHHcCCCCEEE-EEccccccccCC-cCCCCceEEEEc
Q 026122 82 VGTGAGLPGLVLAIACP-DWKVTLL--ESMNKRCVF---LEHAVSLTQLLNVQI-VRGRAETLGKDV-SFREQYDVAVAR 153 (243)
Q Consensus 82 iGcG~G~~~~~la~~~~-~~~v~~v--D~s~~~~~~---a~~~~~~~~~~~v~~-~~~d~~~~~~~~-~~~~~fD~I~~~ 153 (243)
||=|.=..++.|++.++ +.++++. |..++..+. +..+++.+.-.++++ ...|+..+.... ....+||.|+.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 45555566777777766 5566555 444333322 234555543233333 445777665432 113679999996
Q ss_pred C--cc---------------cHHHHHHHHccCcccCeEEEEEeCCCc---HHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122 154 A--VA---------------EMRILAEYCLPLVRVGGLFVAAKGHDP---QEEVKNSERAVQLMGASLLQLCSVE 208 (243)
Q Consensus 154 ~--~~---------------~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~l~~~g~~~~~~~~~~ 208 (243)
- .. =+..+++.+.++|+++|.+.+.....+ .-.+. +..+..|+...+...+.
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~---~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIE---ELAAEAGLVLVRKVPFD 154 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHH---HHHHhcCCEEEEEecCC
Confidence 2 11 157889999999999999888774322 22333 33347888776665544
No 299
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.73 E-value=0.0065 Score=54.52 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=57.3
Q ss_pred CCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccc
Q 026122 71 SSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLG 138 (243)
Q Consensus 71 ~~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~ 138 (243)
+.+++|..|.|+.||.|-.++.+++. +|.|++-|.+++++++.+.++..+.+. ++++++.|+.++.
T Consensus 245 g~fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 245 GLFKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred hccCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 35677999999999999999888865 599999999999999999999988774 3899988887765
No 300
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.59 E-value=0.075 Score=46.14 Aligned_cols=97 Identities=15% Similarity=0.135 Sum_probs=60.2
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc-cccc-cccCCcCCCCceE
Q 026122 73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAET-LGKDVSFREQYDV 149 (243)
Q Consensus 73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~-~~~~~~~~~~fD~ 149 (243)
+.++.+||..|+| .|..++.+|+.. +.+|++++.+++..+.+++ .+.+.+-.... +..+ +... ....+|+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~--~~~~~D~ 235 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAG--LGGGFDV 235 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHh--cCCCceE
Confidence 4557889988876 366777777765 5789999999987665543 45432111111 1100 0011 1256999
Q ss_pred EEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122 150 AVARAVAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
++..... ...++.+.+.|+++|.++..
T Consensus 236 vid~~g~--~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 236 IFDFVGT--QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred EEECCCC--HHHHHHHHHHhhcCCEEEEE
Confidence 8864321 44667788999999998765
No 301
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.54 E-value=0.22 Score=43.72 Aligned_cols=132 Identities=15% Similarity=0.120 Sum_probs=77.7
Q ss_pred EEEEcCCCChHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC---
Q 026122 79 LVDVGTGAGLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--- 154 (243)
Q Consensus 79 VLDiGcG~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~--- 154 (243)
|+|+.||.|.+++-+.+. +.+ +.++|+++.+++..+.|.. + .++++|+.++.... . ..+|+++...
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~-~-~~~dvl~gg~PCq 70 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSD-I-PDFDILLGGFPCQ 70 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhh-C-CCcCEEEecCCCc
Confidence 689999999887666543 455 5679999988777766642 2 45567888875421 1 3589998731
Q ss_pred ----------ccc-HHHHHHHH---ccCcccCeEEEEEeCC------CcHHHHHHHHHHHHHhCCeeeEEEEEec--CC-
Q 026122 155 ----------VAE-MRILAEYC---LPLVRVGGLFVAAKGH------DPQEEVKNSERAVQLMGASLLQLCSVES--QS- 211 (243)
Q Consensus 155 ----------~~~-~~~~l~~~---~~~LkpgG~l~~~~~~------~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~~- 211 (243)
..+ ...++... .+.++|. ++++++. .....+..+.+.++..|+.+... -+.. -+
T Consensus 71 ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~-~l~a~dyGv 147 (315)
T TIGR00675 71 PFSIAGKRKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYK-VLNAKDFGV 147 (315)
T ss_pred ccchhcccCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEE-EEcHHHCCC
Confidence 111 12222222 2345674 4444432 12345677788889999976432 2221 11
Q ss_pred -CCCceEEEEEEe
Q 026122 212 -PFGQRTAVVCLK 223 (243)
Q Consensus 212 -~~~~r~~v~~~k 223 (243)
...+|.+++..+
T Consensus 148 PQ~R~R~f~ia~r 160 (315)
T TIGR00675 148 PQNRERIYIVGFR 160 (315)
T ss_pred CCCccEEEEEEEe
Confidence 223666666655
No 302
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.48 E-value=0.19 Score=44.32 Aligned_cols=115 Identities=15% Similarity=0.147 Sum_probs=72.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCC-CceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFRE-QYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~fD~I~~~~ 154 (243)
..+++|+-||.|.+.+-+.... ---+.++|+++.+++.-+.|... ..++..|+.++.... ... .+|+++...
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~-~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEA-LRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhh-ccccCCCEEEeCC
Confidence 4589999999998876666542 23578999999877766665432 456777877765432 112 689999841
Q ss_pred -------------ccc----H-HHHHHHHccCcccCeEEEEEeCC-C----cHHHHHHHHHHHHHhCCe
Q 026122 155 -------------VAE----M-RILAEYCLPLVRVGGLFVAAKGH-D----PQEEVKNSERAVQLMGAS 200 (243)
Q Consensus 155 -------------~~~----~-~~~l~~~~~~LkpgG~l~~~~~~-~----~~~~~~~~~~~l~~~g~~ 200 (243)
..+ + -.++ .+...++| .++++++. . ....+..+.+.|++.|+.
T Consensus 76 PCQ~FS~aG~r~~~~D~R~~L~~~~~-r~I~~~~P--~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 76 PCQDFSIAGKRRGYDDPRGSLFLEFI-RLIEQLRP--KFFVLENVKGLLSSKGQTFDEIKKELEELGYG 141 (328)
T ss_pred CCcchhhcCcccCCcCccceeeHHHH-HHHHhhCC--CEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence 111 1 1222 23345566 44554432 1 223677788899999996
No 303
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.34 E-value=0.035 Score=45.44 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=31.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEH 117 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~ 117 (243)
++++.|||--||+|..+++..+. +-+.+|+|++++.++.|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 34889999999999987554433 5689999999999988864
No 304
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=95.33 E-value=0.033 Score=49.47 Aligned_cols=44 Identities=20% Similarity=0.236 Sum_probs=37.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAV 119 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~ 119 (243)
+-..|+|+|+|.|.++..++..+ +..|.+||-|+...+.|++.-
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~rLd 196 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQRLD 196 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHHHH
Confidence 35689999999999999999776 689999999988777776543
No 305
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.30 E-value=0.016 Score=43.36 Aligned_cols=88 Identities=17% Similarity=0.148 Sum_probs=56.3
Q ss_pred CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc---cCCcCCCCceEEEEcCcccHHHH
Q 026122 85 GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG---KDVSFREQYDVAVARAVAEMRIL 161 (243)
Q Consensus 85 G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~~~fD~I~~~~~~~~~~~ 161 (243)
|.|..++.+|+..+ ++|+++|.++...+.++ ++|.. .++..+-.++. ........+|+|+-.... ...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~----~~Ga~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~--~~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAK----ELGAD--HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS--GDT 71 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHH----HTTES--EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS--HHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHH----hhccc--ccccccccccccccccccccccceEEEEecCc--HHH
Confidence 35778889998876 99999999998666654 45533 22222222111 000001369999965332 457
Q ss_pred HHHHccCcccCeEEEEEeCC
Q 026122 162 AEYCLPLVRVGGLFVAAKGH 181 (243)
Q Consensus 162 l~~~~~~LkpgG~l~~~~~~ 181 (243)
++.+...++++|.++++-..
T Consensus 72 ~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 72 LQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp HHHHHHHEEEEEEEEEESST
T ss_pred HHHHHHHhccCCEEEEEEcc
Confidence 77888899999998886643
No 306
>PRK11524 putative methyltransferase; Provisional
Probab=95.20 E-value=0.049 Score=47.01 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=37.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL 121 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~ 121 (243)
++|+.|||--||||.-+++..+. +-+.+|+|++++.++.|++.++.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 45899999999999887544433 56899999999999999888653
No 307
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.16 E-value=0.12 Score=45.57 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=56.8
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeC---CHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEE
Q 026122 75 SNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLES---MNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA 150 (243)
Q Consensus 75 ~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~---s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I 150 (243)
++.+||=+|+| .|..++.+|+.. +++|++++. +++..+.+ +++|...+.....+..+ ... ...+|+|
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~----~~~Ga~~v~~~~~~~~~-~~~---~~~~d~v 242 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIV----EELGATYVNSSKTPVAE-VKL---VGEFDLI 242 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHH----HHcCCEEecCCccchhh-hhh---cCCCCEE
Confidence 47899999886 355566667665 568999997 56655544 34554312111111111 011 2469999
Q ss_pred EEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 151 VARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+-..-. ...+..+.+.|++||++++.-
T Consensus 243 id~~g~--~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 243 IEATGV--PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred EECcCC--HHHHHHHHHHccCCcEEEEEe
Confidence 975432 235677788999999987654
No 308
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=95.04 E-value=0.73 Score=39.02 Aligned_cols=124 Identities=16% Similarity=0.163 Sum_probs=67.2
Q ss_pred CCeEEEEcCCCChHHHHHHHH---C--CCCEEEEEeCCH--------------------------HHHHHHHHHHHHcCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIA---C--PDWKVTLLESMN--------------------------KRCVFLEHAVSLTQL 124 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~---~--~~~~v~~vD~s~--------------------------~~~~~a~~~~~~~~~ 124 (243)
.+.|+|+||=.|..++.++.. + ++-++++.|.=+ ...+..+++..+.++
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 568999999999877655432 1 356799999211 123344444455554
Q ss_pred --CCEEEEEccccccccCCcCCCCceEEEEcC--cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCe
Q 026122 125 --LNVQIVRGRAETLGKDVSFREQYDVAVARA--VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGAS 200 (243)
Q Consensus 125 --~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~--~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~ 200 (243)
.+++++.|.+.+..+.. ..+++-++...+ ...-...++.+...|.|||.+++-. ......-+.+.+..++.|..
T Consensus 155 ~~~~v~~vkG~F~dTLp~~-p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DD-Y~~~gcr~AvdeF~~~~gi~ 232 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDA-PIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDD-YGHPGCRKAVDEFRAEHGIT 232 (248)
T ss_dssp SSTTEEEEES-HHHHCCC--TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESS-TTTHHHHHHHHHHHHHTT--
T ss_pred CcccEEEECCcchhhhccC-CCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeC-CCChHHHHHHHHHHHHcCCC
Confidence 46999999998754421 113343333332 3356788899999999999977743 33222222333444577764
Q ss_pred e
Q 026122 201 L 201 (243)
Q Consensus 201 ~ 201 (243)
.
T Consensus 233 ~ 233 (248)
T PF05711_consen 233 D 233 (248)
T ss_dssp S
T ss_pred C
Confidence 3
No 309
>PRK13699 putative methylase; Provisional
Probab=94.85 E-value=0.082 Score=44.16 Aligned_cols=47 Identities=11% Similarity=0.072 Sum_probs=38.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT 122 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 122 (243)
++++.|||--||+|..+++..+. +-+.+|+|++++..+.+.+.++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 35889999999999887554433 568999999999999998877653
No 310
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.80 E-value=0.14 Score=45.25 Aligned_cols=100 Identities=10% Similarity=0.004 Sum_probs=57.7
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccc-cccCCcCCCCceE
Q 026122 73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAET-LGKDVSFREQYDV 149 (243)
Q Consensus 73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~~~~~~~~~fD~ 149 (243)
+.++.+||=.|||. |..++.+|+..+..+|+++|.+++..+.++ ++|.+. +.....+..+ +... .....+|+
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~----~~Ga~~~i~~~~~~~~~~i~~~-~~~~g~d~ 248 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR----EFGATHTVNSSGTDPVEAIRAL-TGGFGADV 248 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCceEEcCCCcCHHHHHHHH-hCCCCCCE
Confidence 45588999888752 444566676654336999999998766664 345431 1111111111 1100 00135899
Q ss_pred EEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 150 AVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
|+-.... ...++.+.+.+++||++++.-
T Consensus 249 vid~~g~--~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 249 VIDAVGR--PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred EEECCCC--HHHHHHHHHHhccCCEEEEEC
Confidence 9864322 234566677899999987653
No 311
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.72 E-value=0.13 Score=46.03 Aligned_cols=107 Identities=17% Similarity=0.145 Sum_probs=71.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-------HcCC--CCEEEEEccccccccCCcC
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVS-------LTQL--LNVQIVRGRAETLGKDVSF 143 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~~--~~v~~~~~d~~~~~~~~~~ 143 (243)
+++++...|+|+|.|.+....|.......=+|+++.....+.+..+.+ ..|- ..++.++++..+-......
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 345889999999999988777766555678899988776666654432 2343 2388888888764432222
Q ss_pred CCCceEEEEcCcc---cHHHHHHHHccCcccCeEEEEEe
Q 026122 144 REQYDVAVARAVA---EMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 144 ~~~fD~I~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
....++|++|++. ++..=++++..-+++|-+++-..
T Consensus 270 ~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 270 QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSK 308 (419)
T ss_pred hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEeccc
Confidence 3568999998743 33333346667788888866433
No 312
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.55 E-value=0.4 Score=42.00 Aligned_cols=91 Identities=19% Similarity=0.045 Sum_probs=56.6
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122 73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
++++.+||=.|+| .|..++.+|+.. +++|++++.+++..+.+ +++|... ++. ..+.. .+.+|+++
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a----~~~Ga~~--vi~--~~~~~-----~~~~d~~i 228 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLA----LALGAAS--AGG--AYDTP-----PEPLDAAI 228 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHH----HHhCCce--ecc--ccccC-----cccceEEE
Confidence 3558899999975 333455666665 56899999998865554 4466542 121 11111 14588766
Q ss_pred EcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 152 ARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
..... ...+....+.|++||++++.-
T Consensus 229 ~~~~~--~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 229 LFAPA--GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred ECCCc--HHHHHHHHHhhCCCcEEEEEe
Confidence 43221 245777888999999987644
No 313
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.13 E-value=0.19 Score=41.82 Aligned_cols=98 Identities=19% Similarity=0.246 Sum_probs=59.2
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC--CcCCCCceEE
Q 026122 74 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDVA 150 (243)
Q Consensus 74 ~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~~~fD~I 150 (243)
.++.+||..|+|+ |...+.+++.. +.+|++++.+++..+.+++ .+... ++...-.+.... ......+|++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~----~g~~~--~~~~~~~~~~~~~~~~~~~~~d~v 205 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKE----LGADH--VIDYKEEDLEEELRLTGGGGADVV 205 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCce--eccCCcCCHHHHHHHhcCCCCCEE
Confidence 4588999999996 55555666654 5899999999876665533 33221 111111111000 0012569999
Q ss_pred EEcCcccHHHHHHHHccCcccCeEEEEEeC
Q 026122 151 VARAVAEMRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
+..... ...+..+.+.++++|.++....
T Consensus 206 i~~~~~--~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 206 IDAVGG--PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EECCCC--HHHHHHHHHhcccCCEEEEEcc
Confidence 975432 1445667788899999887653
No 314
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=94.12 E-value=0.13 Score=43.86 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=44.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHC-----CCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEcccccccc
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIAC-----PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGK 139 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~-----~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~ 139 (243)
++...++|+|||.|.++..+++.. +...++.||....... .-...+.... ..++=+..|+.++..
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K-~D~~~~~~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK-ADNKIRKDESEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc-chhhhhccCCCCceEEEEEEeeccch
Confidence 447799999999999999999887 4578999998653322 2222222221 236777778888764
No 315
>PTZ00357 methyltransferase; Provisional
Probab=94.03 E-value=0.2 Score=48.07 Aligned_cols=97 Identities=14% Similarity=0.114 Sum_probs=60.8
Q ss_pred eEEEEcCCCChHH---HHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH-cCCC--------CEEEEEccccccccCC---
Q 026122 78 KLVDVGTGAGLPG---LVLAIAC-PDWKVTLLESMNKRCVFLEHAVSL-TQLL--------NVQIVRGRAETLGKDV--- 141 (243)
Q Consensus 78 ~VLDiGcG~G~~~---~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~-~~~~--------~v~~~~~d~~~~~~~~--- 141 (243)
.|+=+|+|-|-+- +..+... -..+|++||.|+.++.+...+.+. .... .|+++..|+.++....
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999763 2222222 246899999997765555444322 2332 2899999999985321
Q ss_pred -----cCCCCceEEEEcC---ccc---HHHHHHHHccCccc----CeE
Q 026122 142 -----SFREQYDVAVARA---VAE---MRILAEYCLPLVRV----GGL 174 (243)
Q Consensus 142 -----~~~~~fD~I~~~~---~~~---~~~~l~~~~~~Lkp----gG~ 174 (243)
...+++|+|||.- +.+ -.+.|+.+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 0113799999942 111 14556667777776 675
No 316
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.77 E-value=0.24 Score=44.05 Aligned_cols=97 Identities=20% Similarity=0.153 Sum_probs=56.8
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc----cccCCcCCCCc
Q 026122 73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----LGKDVSFREQY 147 (243)
Q Consensus 73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~~~~f 147 (243)
+.++.+||=.|+| .|..++.+|+.....+|+++|.+++..+.++ ++|... ++..+-.+ +... ..+.+
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~----~~Ga~~--~i~~~~~~~~~~i~~~--~~~g~ 260 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR----ELGATA--TVNAGDPNAVEQVREL--TGGGV 260 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH----HcCCce--EeCCCchhHHHHHHHH--hCCCC
Confidence 3457888888875 2444555666653337999999998766664 355432 22211111 1110 01368
Q ss_pred eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
|+|+-..-. ...++.+.+.|+++|+++..-
T Consensus 261 d~vid~~G~--~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 261 DYAFEMAGS--VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CEEEECCCC--hHHHHHHHHHHhcCCEEEEEc
Confidence 999964321 234566677899999987654
No 317
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=93.68 E-value=0.057 Score=46.18 Aligned_cols=102 Identities=16% Similarity=0.223 Sum_probs=56.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHH-------HHHHH--HcCC-CCEEEEEccccccccCCcCC
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFL-------EHAVS--LTQL-LNVQIVRGRAETLGKDVSFR 144 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a-------~~~~~--~~~~-~~v~~~~~d~~~~~~~~~~~ 144 (243)
.+++|||+|||+|.+++..... ....+...|.|.+.++.. +-.+. .... .-..+.+....+........
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~-~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVK-GAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred cCceeEecCCcccccchhhhhh-ccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 4889999999999999777755 347899999987766211 11111 0000 00223333111111110001
Q ss_pred CCceEEEEcC----cccHHHH-HHHHccCcccCeEEEE
Q 026122 145 EQYDVAVARA----VAEMRIL-AEYCLPLVRVGGLFVA 177 (243)
Q Consensus 145 ~~fD~I~~~~----~~~~~~~-l~~~~~~LkpgG~l~~ 177 (243)
-.||+|.+.. ......+ ...-..+++++|.++.
T Consensus 195 ~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 195 THYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred cchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence 2789988853 2233444 4455667788888664
No 318
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.66 E-value=0.35 Score=41.93 Aligned_cols=86 Identities=20% Similarity=0.102 Sum_probs=52.9
Q ss_pred CCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
+.+||=+||| .|..++.+|+..+...|.++|.+++.++.+... . ++ |..+. . ...+|+|+-..
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~-----~i--~~~~~--~---~~g~Dvvid~~ 208 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E-----VL--DPEKD--P---RRDYRAIYDAS 208 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c-----cc--Chhhc--c---CCCCCEEEECC
Confidence 6788888876 455566677766544577889988766554321 1 11 11110 1 14699998643
Q ss_pred cccHHHHHHHHccCcccCeEEEEEe
Q 026122 155 VAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 155 ~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
-. ...++.+.+.++++|++++.-
T Consensus 209 G~--~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 209 GD--PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred CC--HHHHHHHHHhhhcCcEEEEEe
Confidence 22 234566778999999988653
No 319
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.61 E-value=1.8 Score=39.44 Aligned_cols=89 Identities=12% Similarity=0.104 Sum_probs=52.8
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122 75 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 75 ~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
.+++|+=+|+|. |......++.. +++|+.+|.++.....+ ...|. ++. +.++.. ...|+|+..
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A----~~~G~---~v~--~leeal------~~aDVVIta 257 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEA----AMDGF---RVM--TMEEAA------KIGDIFITA 257 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHH----HhcCC---EeC--CHHHHH------hcCCEEEEC
Confidence 388999999985 33333334333 67999999998543222 22333 222 223321 357998874
Q ss_pred CcccHHHHH-HHHccCcccCeEEEEEeCC
Q 026122 154 AVAEMRILA-EYCLPLVRVGGLFVAAKGH 181 (243)
Q Consensus 154 ~~~~~~~~l-~~~~~~LkpgG~l~~~~~~ 181 (243)
. .. ..++ ......+|+|++++.....
T Consensus 258 T-G~-~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 258 T-GN-KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred C-CC-HHHHHHHHHhcCCCCcEEEEECCC
Confidence 3 22 3334 3477899999987765543
No 320
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.59 E-value=0.057 Score=39.64 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=27.2
Q ss_pred CceEEEEcCc----------ccHHHHHHHHccCcccCeEEEEEe
Q 026122 146 QYDVAVARAV----------AEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 146 ~fD~I~~~~~----------~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+||+|+|-++ ..+..+++.+.+.|+|||.++++-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 4899999652 347889999999999999998864
No 321
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.58 E-value=0.18 Score=46.29 Aligned_cols=106 Identities=14% Similarity=0.100 Sum_probs=71.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc----cccCCcCCCCceE
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----LGKDVSFREQYDV 149 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~~~~fD~ 149 (243)
..+..+|=+|-|.|.+...+....|..++++|++++.+++.++.+.....-....+...|..+ .......+..||+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 346789999999999988888888989999999999999999887643321122333333222 2111011257999
Q ss_pred EEEcCc--------cc-----HHHHHHHHccCcccCeEEEEEe
Q 026122 150 AVARAV--------AE-----MRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 150 I~~~~~--------~~-----~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
++..-. .. -..++..++..|.|-|.+++-.
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence 997310 01 3667778899999999987654
No 322
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.49 E-value=0.24 Score=42.31 Aligned_cols=96 Identities=23% Similarity=0.197 Sum_probs=55.0
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEE-ccc-cccccCCcCCCCceEEE
Q 026122 75 SNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR-GRA-ETLGKDVSFREQYDVAV 151 (243)
Q Consensus 75 ~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~-~~~~~~~~~~~~fD~I~ 151 (243)
++.+||=+|+| .|..++.+|+.....+|+++|.+++..+.+++ +|... ++. .+. ...... .....+|+|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~-~~~~g~d~vi 192 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATA--LAEPEVLAERQGGL-QNGRGVDVAL 192 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcE--ecCchhhHHHHHHH-hCCCCCCEEE
Confidence 47889988875 33344556666543359999999876665544 45431 111 111 111100 0013599998
Q ss_pred EcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 152 ARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
-..-. ...++.+.+.++++|+++..-
T Consensus 193 d~~G~--~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 193 EFSGA--TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred ECCCC--hHHHHHHHHHhcCCCEEEEec
Confidence 64322 334566778899999987654
No 323
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.35 E-value=0.82 Score=35.84 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=64.3
Q ss_pred eEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 78 KLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 78 ~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
+|-=||+ |..+..+|+.. .+.+|++.|.+++..+.+.+ .+ ++. ..+..++. ...|+|++.-
T Consensus 3 ~Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~----~g---~~~-~~s~~e~~------~~~dvvi~~v~ 66 (163)
T PF03446_consen 3 KIGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE----AG---AEV-ADSPAEAA------EQADVVILCVP 66 (163)
T ss_dssp EEEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH----TT---EEE-ESSHHHHH------HHBSEEEE-SS
T ss_pred EEEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH----hh---hhh-hhhhhhHh------hcccceEeecc
Confidence 3444555 56666666542 46899999999875444332 12 333 33444443 3469998743
Q ss_pred -cccHHHHHHH--HccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEE
Q 026122 155 -VAEMRILAEY--CLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL 204 (243)
Q Consensus 155 -~~~~~~~l~~--~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 204 (243)
....+.++.. +...|++|.. ++-.+....+...++.+.++..|...++-
T Consensus 67 ~~~~v~~v~~~~~i~~~l~~g~i-iid~sT~~p~~~~~~~~~~~~~g~~~vda 118 (163)
T PF03446_consen 67 DDDAVEAVLFGENILAGLRPGKI-IIDMSTISPETSRELAERLAAKGVRYVDA 118 (163)
T ss_dssp SHHHHHHHHHCTTHGGGS-TTEE-EEE-SS--HHHHHHHHHHHHHTTEEEEEE
T ss_pred cchhhhhhhhhhHHhhccccceE-EEecCCcchhhhhhhhhhhhhccceeeee
Confidence 2346777777 7777877755 55555566667777888888888765543
No 324
>PRK10458 DNA cytosine methylase; Provisional
Probab=93.12 E-value=7.3 Score=36.18 Aligned_cols=122 Identities=11% Similarity=-0.033 Sum_probs=69.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC--------------
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------------- 141 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------------- 141 (243)
..+++|+-||.|.+.+.+-.. +.-.|.++|+++.+.+.-+.|.. ...+...+++|+.++....
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~~--~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~ 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANWY--CDPATHRFNEDIRDITLSHKEGVSDEEAAEHIR 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHcC--CCCccceeccChhhCccccccccchhhhhhhhh
Confidence 458999999999887666543 23367889999987766655531 1122345566776654210
Q ss_pred cCCCCceEEEEcC---------c--------------ccHHHHHHHHc---cCcccCeEEEEEeCC------CcHHHHHH
Q 026122 142 SFREQYDVAVARA---------V--------------AEMRILAEYCL---PLVRVGGLFVAAKGH------DPQEEVKN 189 (243)
Q Consensus 142 ~~~~~fD~I~~~~---------~--------------~~~~~~l~~~~---~~LkpgG~l~~~~~~------~~~~~~~~ 189 (243)
..-...|+++... . .....++-.+. +..+|. ++++++. ........
T Consensus 165 ~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk--~fvlENV~gl~s~~~g~~f~~ 242 (467)
T PRK10458 165 QHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPA--IFVLENVKNLKSHDKGKTFRI 242 (467)
T ss_pred ccCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCC--EEEEeCcHhhhcccccHHHHH
Confidence 0012579888731 0 01111322222 234564 3444432 22345677
Q ss_pred HHHHHHHhCCeee
Q 026122 190 SERAVQLMGASLL 202 (243)
Q Consensus 190 ~~~~l~~~g~~~~ 202 (243)
+++.|+..|+.+.
T Consensus 243 i~~~L~~lGY~v~ 255 (467)
T PRK10458 243 IMQTLDELGYDVA 255 (467)
T ss_pred HHHHHHHcCCeEE
Confidence 8888899999875
No 325
>PRK13699 putative methylase; Provisional
Probab=93.11 E-value=0.4 Score=40.02 Aligned_cols=74 Identities=12% Similarity=0.077 Sum_probs=47.5
Q ss_pred EEEEccccccccCCcCCCCceEEEEcC---c----------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHH
Q 026122 128 QIVRGRAETLGKDVSFREQYDVAVARA---V----------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVK 188 (243)
Q Consensus 128 ~~~~~d~~~~~~~~~~~~~fD~I~~~~---~----------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 188 (243)
+++++|..+.-.. ..++++|+|+..- . .-...+++++.|+|||||.+++..+.... .
T Consensus 3 ~l~~gD~le~l~~-lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~---~ 78 (227)
T PRK13699 3 RFILGNCIDVMAR-FPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRV---D 78 (227)
T ss_pred eEEechHHHHHHh-CCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccH---H
Confidence 5677777654211 0126788888741 0 01357888999999999998876654432 3
Q ss_pred HHHHHHHHhCCeeeEEE
Q 026122 189 NSERAVQLMGASLLQLC 205 (243)
Q Consensus 189 ~~~~~l~~~g~~~~~~~ 205 (243)
.+...+++.||.+...-
T Consensus 79 ~~~~al~~~GF~l~~~I 95 (227)
T PRK13699 79 RFMAAWKNAGFSVVGHL 95 (227)
T ss_pred HHHHHHHHCCCEEeeEE
Confidence 34566778999866533
No 326
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=93.10 E-value=0.6 Score=40.66 Aligned_cols=93 Identities=16% Similarity=0.168 Sum_probs=57.1
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc---ccccccCCcCCCCceE
Q 026122 75 SNLKLVDVGTGA-GLPGLVLAIACPDW-KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR---AETLGKDVSFREQYDV 149 (243)
Q Consensus 75 ~~~~VLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d---~~~~~~~~~~~~~fD~ 149 (243)
++.+||-.|||. |..++.+|+.. +. +|++++.+++..+.+++ .+.+ .++..+ ..+.... ...+|+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~---~~~vd~ 234 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARA----MGAD--ETVNLARDPLAAYAAD---KGDFDV 234 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----cCCC--EEEcCCchhhhhhhcc---CCCccE
Confidence 478899888764 55666677665 45 89999999876664433 3432 122211 1111111 145999
Q ss_pred EEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 150 AVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
++..... ...++.+.+.|+++|+++...
T Consensus 235 vld~~g~--~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 235 VFEASGA--PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EEECCCC--HHHHHHHHHHHhcCCEEEEEe
Confidence 9975322 234667788999999987653
No 327
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.96 E-value=1.2 Score=32.41 Aligned_cols=90 Identities=17% Similarity=0.084 Sum_probs=53.5
Q ss_pred CCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-CCCCceEEEEcCccc-HH
Q 026122 84 TGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-FREQYDVAVARAVAE-MR 159 (243)
Q Consensus 84 cG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~I~~~~~~~-~~ 159 (243)
||.|..+..+++.. .+.+|+.+|.+++.++.++. . .+.++.+|..+...... .-++.|.+++....+ ..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~---~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n 76 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----E---GVEVIYGDATDPEVLERAGIEKADAVVILTDDDEEN 76 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----T---TSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----c---ccccccccchhhhHHhhcCccccCEEEEccCCHHHH
Confidence 67777877777643 33589999999986555543 2 26799999887432110 015788888754332 22
Q ss_pred HHHHHHccCcccCeEEEEEeC
Q 026122 160 ILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 160 ~~l~~~~~~LkpgG~l~~~~~ 180 (243)
..+....+.+.|...+++...
T Consensus 77 ~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 77 LLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp HHHHHHHHHHTTTSEEEEEES
T ss_pred HHHHHHHHHHCCCCeEEEEEC
Confidence 233334455667777776554
No 328
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=92.87 E-value=2.8 Score=35.58 Aligned_cols=104 Identities=17% Similarity=0.165 Sum_probs=59.7
Q ss_pred HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc-CcccHHHHHHHHccC
Q 026122 90 GLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR-AVAEMRILAEYCLPL 168 (243)
Q Consensus 90 ~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~-~~~~~~~~l~~~~~~ 168 (243)
+..|.+..+..+|+|+|.++..++.+ .+.|... -...+.+.+ ..+|+|+.. .......+++++.+.
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a----~~~g~~~--~~~~~~~~~-------~~~DlvvlavP~~~~~~~l~~~~~~ 68 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAA----LELGIID--EASTDIEAV-------EDADLVVLAVPVSAIEDVLEEIAPY 68 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHH----HHTTSSS--EEESHHHHG-------GCCSEEEE-S-HHHHHHHHHHHHCG
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHH----HHCCCee--eccCCHhHh-------cCCCEEEEcCCHHHHHHHHHHhhhh
Confidence 45666666679999999999754443 3455532 111222222 457988864 355789999999999
Q ss_pred cccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122 169 VRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE 208 (243)
Q Consensus 169 LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 208 (243)
+++|+.+.=..+. ....+..+.+.+. .+...+....+.
T Consensus 69 ~~~~~iv~Dv~Sv-K~~~~~~~~~~~~-~~~~~v~~HPM~ 106 (258)
T PF02153_consen 69 LKPGAIVTDVGSV-KAPIVEAMERLLP-EGVRFVGGHPMA 106 (258)
T ss_dssp S-TTSEEEE--S--CHHHHHHHHHHHT-SSGEEEEEEESC
T ss_pred cCCCcEEEEeCCC-CHHHHHHHHHhcC-cccceeecCCCC
Confidence 9999775544443 3333444444333 455666666544
No 329
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.69 E-value=0.44 Score=44.58 Aligned_cols=93 Identities=13% Similarity=0.183 Sum_probs=56.0
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc-----------ccc----
Q 026122 76 NLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-----------LGK---- 139 (243)
Q Consensus 76 ~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-----------~~~---- 139 (243)
+.+|+=+|||. |..++..++.. ++.|+.+|.+++..+.++ .+|.. ++.-|..+ +..
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~----~lGa~---~v~v~~~e~g~~~~gYa~~~s~~~~~ 235 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQ----SMGAE---FLELDFKEEGGSGDGYAKVMSEEFIA 235 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH----HcCCe---EEeccccccccccccceeecCHHHHH
Confidence 68999999984 56666666665 578999999998655444 34442 22222111 000
Q ss_pred -----CCcCCCCceEEEEcCc----ccHHHHHHHHccCcccCeEEE
Q 026122 140 -----DVSFREQYDVAVARAV----AEMRILAEYCLPLVRVGGLFV 176 (243)
Q Consensus 140 -----~~~~~~~fD~I~~~~~----~~~~~~l~~~~~~LkpgG~l~ 176 (243)
..+.-..+|+|+.... ..+.-+.+++.+.+|||+.++
T Consensus 236 ~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 236 AEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 0000146999987651 122335667778888888866
No 330
>PLN02740 Alcohol dehydrogenase-like
Probab=92.65 E-value=0.59 Score=41.84 Aligned_cols=97 Identities=13% Similarity=0.034 Sum_probs=56.4
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc-----ccc-cccCCcCCC
Q 026122 73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-----AET-LGKDVSFRE 145 (243)
Q Consensus 73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-----~~~-~~~~~~~~~ 145 (243)
+.++.+||=+||| .|..++.+|+..+..+|+++|.+++.++.+++ +|.+. ++..+ ..+ +... ..+
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~v~~~--~~~ 267 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGITD--FINPKDSDKPVHERIREM--TGG 267 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCcE--EEecccccchHHHHHHHH--hCC
Confidence 4568899999875 23344556666543379999999987666643 55432 22211 111 1110 013
Q ss_pred CceEEEEcCcccHHHHHHHHccCcccC-eEEEEEe
Q 026122 146 QYDVAVARAVAEMRILAEYCLPLVRVG-GLFVAAK 179 (243)
Q Consensus 146 ~fD~I~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 179 (243)
.+|+|+-..-. ...++.+...+++| |++++.-
T Consensus 268 g~dvvid~~G~--~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 268 GVDYSFECAGN--VEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCEEEECCCC--hHHHHHHHHhhhcCCCEEEEEc
Confidence 69999864332 23455666678886 8876643
No 331
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=92.58 E-value=0.39 Score=36.83 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=53.3
Q ss_pred CCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc-------ccccccCCcCCCCceEEEEcC-
Q 026122 85 GAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-------AETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 85 G~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-------~~~~~~~~~~~~~fD~I~~~~- 154 (243)
|.|.++..+|... .+.+|+.++.++ .++. .++.++ ++...+ .............+|+|+...
T Consensus 5 G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~----~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 5 GAGAIGSLYAARLAQAGHDVTLVSRSP-RLEA----IKEQGL---TITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp STSHHHHHHHHHHHHTTCEEEEEESHH-HHHH----HHHHCE---EEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CcCHHHHHHHHHHHHCCCceEEEEccc-cHHh----hhheeE---EEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 5556666666543 578999999987 4443 222232 222111 000100000126799999765
Q ss_pred cccHHHHHHHHccCcccCeEEEEEeCC
Q 026122 155 VAEMRILAEYCLPLVRVGGLFVAAKGH 181 (243)
Q Consensus 155 ~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (243)
..+.+..++.+.+.+.++..+++..+.
T Consensus 77 a~~~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 77 AYQLEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp GGGHHHHHHHHCTGEETTEEEEEESSS
T ss_pred ccchHHHHHHHhhccCCCcEEEEEeCC
Confidence 446788999999999999888877643
No 332
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=92.46 E-value=0.33 Score=41.00 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=32.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHCC--------CCEEEEEeCCHHHHHHHHHHHHH
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACP--------DWKVTLLESMNKRCVFLEHAVSL 121 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~--------~~~v~~vD~s~~~~~~a~~~~~~ 121 (243)
.-+|+|+|+|+|.++..+..... ..+++.||+|+.+.+.-++....
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 36999999999999877665422 36899999999877666655543
No 333
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=92.45 E-value=0.35 Score=42.60 Aligned_cols=100 Identities=14% Similarity=0.067 Sum_probs=55.9
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccc---cCCcCCCCc
Q 026122 73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLG---KDVSFREQY 147 (243)
Q Consensus 73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~---~~~~~~~~f 147 (243)
++++.+||=.|||+ |..++.+|+.. +.+|+++|.+++.++.+++ +|... +.....+..++. ........+
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~ 238 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAKARGL 238 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhcccCCC
Confidence 34588999999864 55566677765 4689999999987666543 45432 111111111110 000001235
Q ss_pred e----EEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 148 D----VAVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 148 D----~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
| +|+-.. .. ...++.+.+.|++||++++.-
T Consensus 239 d~~~d~v~d~~-g~-~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 239 RSTGWKIFECS-GS-KPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CCCcCEEEECC-CC-hHHHHHHHHHHhcCCeEEEEC
Confidence 4 555322 22 235556677899999987654
No 334
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=92.44 E-value=0.4 Score=37.01 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=30.8
Q ss_pred EEcCCCC--hHHHHHH--HHCCCCEEEEEeCCHHHHHHHHHH--HHHcCCC-CEEEEEcc
Q 026122 81 DVGTGAG--LPGLVLA--IACPDWKVTLLESMNKRCVFLEHA--VSLTQLL-NVQIVRGR 133 (243)
Q Consensus 81 DiGcG~G--~~~~~la--~~~~~~~v~~vD~s~~~~~~a~~~--~~~~~~~-~v~~~~~d 133 (243)
|||+..| .....+. ...++.+|+++|+++...+..+++ +..++.. .+++....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~ 60 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYA 60 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEee
Confidence 8999999 4433332 345788999999999999988888 5544332 25555433
No 335
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=92.43 E-value=0.63 Score=40.57 Aligned_cols=99 Identities=14% Similarity=0.122 Sum_probs=56.4
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccc-cccCCcCCCCceE
Q 026122 73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAET-LGKDVSFREQYDV 149 (243)
Q Consensus 73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~~~~~~~~~fD~ 149 (243)
++++.+||-.|+| .|..++.+|+..+...|++++.++...+.+++ ++... +.....+..+ +... ...+.+|+
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~-~~~~~~d~ 239 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILEL-TGGRGVDC 239 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHH-cCCCCCcE
Confidence 4557888887765 35566677776643489999888876555443 34221 1111111111 1100 00146999
Q ss_pred EEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122 150 AVARAVAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
++..... ...+..+.+.|+++|+++..
T Consensus 240 vld~~g~--~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 240 VIEAVGF--EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EEEccCC--HHHHHHHHHHhhcCCEEEEE
Confidence 9864222 24667777889999997754
No 336
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.40 E-value=0.6 Score=40.75 Aligned_cols=98 Identities=20% Similarity=0.144 Sum_probs=54.5
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEccccccccCCcCCCCceEE
Q 026122 74 NSNLKLVDVGTG-AGLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYDVA 150 (243)
Q Consensus 74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~fD~I 150 (243)
.++.+||=+|+| .|..++.+|+.. +++ |+++|.+++..+.++ ++|...+ .....+...+... .....+|+|
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~----~~ga~~~i~~~~~~~~~~~~~-~~~~~~d~v 235 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAK----ALGADFVINSGQDDVQEIREL-TSGAGADVA 235 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH----HhCCCEEEcCCcchHHHHHHH-hCCCCCCEE
Confidence 447888888764 233345556555 455 999999987665553 3454321 1111111111110 001369999
Q ss_pred EEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 151 VARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+-.... ...+..+.+.|+++|++++..
T Consensus 236 id~~g~--~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 236 IECSGN--TAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred EECCCC--HHHHHHHHHHhhcCCEEEEEc
Confidence 964322 234456667899999987654
No 337
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=92.34 E-value=0.17 Score=44.18 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=49.9
Q ss_pred EEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcC----CCCceEEEEc
Q 026122 80 VDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSF----REQYDVAVAR 153 (243)
Q Consensus 80 LDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~----~~~fD~I~~~ 153 (243)
+|||+|+-.+--.+.....++...++|++...+..|..+..++++.. +.+++.........+.. +..||++.||
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 79999987653233222235899999999999999999999998864 66666543322111111 1349999986
No 338
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=92.26 E-value=0.71 Score=40.56 Aligned_cols=98 Identities=15% Similarity=0.087 Sum_probs=57.6
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc----cccCCcCCCCc
Q 026122 73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----LGKDVSFREQY 147 (243)
Q Consensus 73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~~~~f 147 (243)
++++.+||=.|+| .|..++.+|+..+...|+++|.+++..+.++ .+|... ++..+-.+ +... .....+
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~----~~g~~~--~v~~~~~~~~~~i~~~-~~~~~~ 236 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK----EYGATD--IVDYKNGDVVEQILKL-TGGKGV 236 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HcCCce--EecCCCCCHHHHHHHH-hCCCCC
Confidence 3457888888865 3444556666664447999999987665554 355432 22111111 1000 001459
Q ss_pred eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
|+++..... ...+..+.+.|+++|+++...
T Consensus 237 d~vld~~g~--~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 237 DAVIIAGGG--QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred cEEEECCCC--HHHHHHHHHHhhcCCEEEEec
Confidence 999864332 245677788899999977543
No 339
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.13 E-value=3.2 Score=33.91 Aligned_cols=101 Identities=15% Similarity=0.111 Sum_probs=60.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-------CcCCCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFREQ 146 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~~~ 146 (243)
+++|+=.|++ |.++..+++.+ .+.+|++++.+++....+.+..... .++.++.+|+.+.... ....+.
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--GNIHYVVGDVSSTESARNVIEKAAKVLNA 81 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 6789999986 44555565543 4679999999987665543333322 2578888888763211 000135
Q ss_pred ceEEEEcCcc-------c--------------HHHHHHHHccCcccCeEEEEEe
Q 026122 147 YDVAVARAVA-------E--------------MRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 147 fD~I~~~~~~-------~--------------~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
.|.++.++.. + ...+++.+.+.++++|.+++..
T Consensus 82 id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 82 IDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred CCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 6888865411 0 1223455556667788877665
No 340
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.63 E-value=0.78 Score=41.40 Aligned_cols=72 Identities=21% Similarity=0.356 Sum_probs=45.7
Q ss_pred CeEEEEcCCCChHHHHHHH---HCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122 77 LKLVDVGTGAGLPGLVLAI---ACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~---~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
.+||=|||| .++...|. +..+.+|+..|.|.+.++.+..... .+++..+.|+.+.+.....-..+|+|++-
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----GKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----ccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 478999995 44434433 2344799999999876555444322 25888888888764321112467999985
Q ss_pred C
Q 026122 154 A 154 (243)
Q Consensus 154 ~ 154 (243)
.
T Consensus 76 ~ 76 (389)
T COG1748 76 A 76 (389)
T ss_pred C
Confidence 3
No 341
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=91.55 E-value=1 Score=39.75 Aligned_cols=97 Identities=11% Similarity=0.033 Sum_probs=59.7
Q ss_pred CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEc-cccc-cccCCcCCCCc
Q 026122 73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRG-RAET-LGKDVSFREQY 147 (243)
Q Consensus 73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~-d~~~-~~~~~~~~~~f 147 (243)
+.++.+||=.|+ |.|..++.+|+.. +++|++++.+++..+.+++ .+|...+ ..... +..+ +... ..+.+
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~--~~~gv 229 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRY--FPEGI 229 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHH--CCCCc
Confidence 355889999987 3666777788775 5789999999876555432 3555321 11111 2211 1110 01468
Q ss_pred eEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122 148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
|+|+-..- ...+..+.+.|++||+++..
T Consensus 230 D~v~d~vG---~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 230 DIYFDNVG---GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred EEEEECCC---HHHHHHHHHHhccCCEEEEE
Confidence 99986432 23567778899999998754
No 342
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.49 E-value=0.69 Score=39.44 Aligned_cols=88 Identities=17% Similarity=0.112 Sum_probs=64.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
+.++....|+|+-+|..+..|-++ +..|++||--+- + +..-..| .|+....|...+.+. ....|-.+|
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~m----a-~sL~dtg--~v~h~r~DGfk~~P~---r~~idWmVC 276 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPM----A-QSLMDTG--QVTHLREDGFKFRPT---RSNIDWMVC 276 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc--ceEEEEeccchh----h-hhhhccc--ceeeeeccCcccccC---CCCCceEEe
Confidence 456899999999999998777755 689999998652 2 2222222 478888888777653 267999999
Q ss_pred cCcccHHHHHHHHccCcccC
Q 026122 153 RAVAEMRILAEYCLPLVRVG 172 (243)
Q Consensus 153 ~~~~~~~~~l~~~~~~Lkpg 172 (243)
..+..+..+-..+..+|..|
T Consensus 277 DmVEkP~rv~~li~~Wl~nG 296 (358)
T COG2933 277 DMVEKPARVAALIAKWLVNG 296 (358)
T ss_pred ehhcCcHHHHHHHHHHHHcc
Confidence 88877777777777777654
No 343
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=91.49 E-value=0.6 Score=40.99 Aligned_cols=99 Identities=11% Similarity=0.131 Sum_probs=54.0
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEccccccccCCcCCCCce-EE
Q 026122 74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYD-VA 150 (243)
Q Consensus 74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~fD-~I 150 (243)
.++.+||=.||| .|..++.+|+......|+++|.+++..+.++ ..|...+ .....+..++.... ....+| +|
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~----~~Ga~~~i~~~~~~~~~~~~~~-~~~~~d~~v 233 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK----SLGAMQTFNSREMSAPQIQSVL-RELRFDQLI 233 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----HcCCceEecCcccCHHHHHHHh-cCCCCCeEE
Confidence 347889888875 2334455666654334899999998666553 3454211 11111111111100 013577 55
Q ss_pred EEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 151 VARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+- +... ...+..+.+.|++||++++.-
T Consensus 234 ~d-~~G~-~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 234 LE-TAGV-PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred EE-CCCC-HHHHHHHHHHhhcCCEEEEEc
Confidence 53 3222 345666778899999987653
No 344
>PLN02827 Alcohol dehydrogenase-like
Probab=91.37 E-value=1 Score=40.27 Aligned_cols=97 Identities=13% Similarity=0.041 Sum_probs=54.8
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc-----cccc-cccCCcCCC
Q 026122 73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-----RAET-LGKDVSFRE 145 (243)
Q Consensus 73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-----d~~~-~~~~~~~~~ 145 (243)
+.++.+||=.|+| -|..++.+|+......|+++|.+++..+.+ +.+|... ++.. +..+ +... ..+
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a----~~lGa~~--~i~~~~~~~~~~~~v~~~--~~~ 262 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKA----KTFGVTD--FINPNDLSEPIQQVIKRM--TGG 262 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH----HHcCCcE--EEcccccchHHHHHHHHH--hCC
Confidence 4558899999874 233344556565434699999998766655 3455532 2211 1111 1100 013
Q ss_pred CceEEEEcCcccHHHHHHHHccCcccC-eEEEEEe
Q 026122 146 QYDVAVARAVAEMRILAEYCLPLVRVG-GLFVAAK 179 (243)
Q Consensus 146 ~fD~I~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 179 (243)
.+|+|+-..-. ...+..+.+.+++| |++++.-
T Consensus 263 g~d~vid~~G~--~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 263 GADYSFECVGD--TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCEEEECCCC--hHHHHHHHHhhccCCCEEEEEC
Confidence 68999864322 22345566788898 9987643
No 345
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.34 E-value=0.69 Score=40.53 Aligned_cols=99 Identities=20% Similarity=0.126 Sum_probs=59.1
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEE-EccccccccCCcCCCCce
Q 026122 72 SCNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIV-RGRAETLGKDVSFREQYD 148 (243)
Q Consensus 72 ~~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~-~~d~~~~~~~~~~~~~fD 148 (243)
.+.+|.+|-=+|.| -|.+++.+|++. +.+|+++|.+... -++.++.+|-+. +... ..|+-+-... ..+.-.|
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~k---keea~~~LGAd~fv~~~~d~d~~~~~~~-~~dg~~~ 252 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKK---KEEAIKSLGADVFVDSTEDPDIMKAIMK-TTDGGID 252 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchh---HHHHHHhcCcceeEEecCCHHHHHHHHH-hhcCcce
Confidence 34578888777765 788899999887 6899999999632 455667777653 2222 2222111100 1112344
Q ss_pred EEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 149 VAVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
.|.+-+...+ +.+.++||++|.++++-
T Consensus 253 ~v~~~a~~~~----~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 253 TVSNLAEHAL----EPLLGLLKVNGTLVLVG 279 (360)
T ss_pred eeeeccccch----HHHHHHhhcCCEEEEEe
Confidence 4443333334 44556899999988754
No 346
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=91.26 E-value=1.8 Score=36.41 Aligned_cols=92 Identities=22% Similarity=0.104 Sum_probs=55.8
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEE
Q 026122 74 NSNLKLVDVGTGA-GLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVA 150 (243)
Q Consensus 74 ~~~~~VLDiGcG~-G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I 150 (243)
.++.+||=.|||. |..++.+|+..+ .+ |++++.+++..+.+++ .|. ..+..... ... . ...+|+|
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~----~g~~~~~~~~~~---~~~-~---~~~~d~v 163 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEA----LGPADPVAADTA---DEI-G---GRGADVV 163 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHH----cCCCccccccch---hhh-c---CCCCCEE
Confidence 4478888888764 555566676654 56 9999999887665543 331 11111000 110 1 1469999
Q ss_pred EEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 151 VARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+..... ...+....+.|+++|.++...
T Consensus 164 l~~~~~--~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 164 IEASGS--PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEccCC--hHHHHHHHHHhcCCcEEEEEe
Confidence 864322 235567778899999987654
No 347
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=91.17 E-value=1 Score=39.22 Aligned_cols=98 Identities=20% Similarity=0.197 Sum_probs=58.1
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccc-cccCCcCCCCceEE
Q 026122 74 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAET-LGKDVSFREQYDVA 150 (243)
Q Consensus 74 ~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~~~~~~~~~fD~I 150 (243)
.++.+||-.|+|. |..++.+|+.. +.+|+++..+++..+.+++ .+... +.....+..+ +... .....+|++
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~-~~~~~vd~v 231 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLREL-TDGEGADVV 231 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHH-hCCCCCCEE
Confidence 4478999998763 55666777765 6899999888876665533 34322 1111111111 1100 001459999
Q ss_pred EEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 151 VARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+..... ...+..+.+.|+++|.++...
T Consensus 232 ld~~g~--~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 232 IDATGN--PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred EECCCC--HHHHHHHHHHHhcCCEEEEEc
Confidence 975322 345667788899999977543
No 348
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=91.10 E-value=8.3 Score=32.80 Aligned_cols=101 Identities=17% Similarity=0.150 Sum_probs=65.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCC----CEEEEEeCCHHHHHHHHHHH-HHc-CCCCEEEEEccccccccCCcCCCCceE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPD----WKVTLLESMNKRCVFLEHAV-SLT-QLLNVQIVRGRAETLGKDVSFREQYDV 149 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~----~~v~~vD~s~~~~~~a~~~~-~~~-~~~~v~~~~~d~~~~~~~~~~~~~fD~ 149 (243)
+++.+|+|+|+-.-+..+...+.. .+.+.||+|...++...+.+ +.+ ++ .+.-+++|.+..-.... ..+--+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l-~v~~l~~~~~~~La~~~-~~~~Rl 156 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL-EVNALCGDYELALAELP-RGGRRL 156 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC-eEeehhhhHHHHHhccc-CCCeEE
Confidence 789999999999877666554432 68999999998776444433 333 33 37777888765322211 122222
Q ss_pred EEE-c-C-----cccHHHHHHHHccCcccCeEEEEE
Q 026122 150 AVA-R-A-----VAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 150 I~~-~-~-----~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
++. . . ..+...++..+...++||-.+++-
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 222 1 1 235688999999999999998763
No 349
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=91.05 E-value=1.4 Score=39.15 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=34.4
Q ss_pred CCeEEEEcCCCChHHHHHHHH----CC----CCEEEEEeCCHHHHHHHHHHHHH
Q 026122 76 NLKLVDVGTGAGLPGLVLAIA----CP----DWKVTLLESMNKRCVFLEHAVSL 121 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~----~~----~~~v~~vD~s~~~~~~a~~~~~~ 121 (243)
.-.++++|.|+|.++..+.+. .| ..++..||+|++..+.=+++.+.
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 458999999999987655542 23 68999999999876655555543
No 350
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=91.01 E-value=1.4 Score=38.13 Aligned_cols=98 Identities=10% Similarity=0.013 Sum_probs=59.1
Q ss_pred CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEE-ccccccccCCcCCCCce
Q 026122 73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVR-GRAETLGKDVSFREQYD 148 (243)
Q Consensus 73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~-~d~~~~~~~~~~~~~fD 148 (243)
+.++.+||=.|. |.|..++.+|+.. +.+|++++.+++..+.++ .+|.+.+ .... .+..+.... ...+.+|
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~~-~~~~gvd 209 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLK----KLGFDVAFNYKTVKSLEETLKK-ASPDGYD 209 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----HcCCCEEEeccccccHHHHHHH-hCCCCeE
Confidence 345889988884 4666777778775 578999999987655553 4565321 1111 111111100 0014699
Q ss_pred EEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 149 VAVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+|+-..-. ..+..+.+.|+++|+++...
T Consensus 210 vv~d~~G~---~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 210 CYFDNVGG---EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEEECCCH---HHHHHHHHHhCcCcEEEEec
Confidence 99864322 23467788999999988653
No 351
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=90.94 E-value=1.2 Score=38.54 Aligned_cols=96 Identities=11% Similarity=0.025 Sum_probs=58.3
Q ss_pred CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc--CCcCCCCce
Q 026122 73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK--DVSFREQYD 148 (243)
Q Consensus 73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~~~fD 148 (243)
+.++.+||=.|+ |.|..++.+|+.. +++|++++.+++..+.++ .+|... ++..+-.++.. .......+|
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~----~~Ga~~--vi~~~~~~~~~~v~~~~~~gvd 213 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLK----ELGFDA--VFNYKTVSLEEALKEAAPDGID 213 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----HcCCCE--EEeCCCccHHHHHHHHCCCCcE
Confidence 345788888874 4555667777775 678999999987655554 355532 22221111110 000114599
Q ss_pred EEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122 149 VAVARAVAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
+|+-.... ..++.+.+.|+++|+++..
T Consensus 214 ~vld~~g~---~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 214 CYFDNVGG---EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EEEECCCH---HHHHHHHHhhccCCEEEEE
Confidence 99864322 4557788899999998754
No 352
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=90.88 E-value=0.36 Score=44.18 Aligned_cols=106 Identities=13% Similarity=0.129 Sum_probs=61.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHc-CCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPD--WKVTLLESMNKRCVFLEHAVSLT-QLLNVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
...++|+|.|.|.-.-.+....++ -.++.||.+..|......+.+.- ......+......+...+......||+|++
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 567999999988765444444433 57999999999999888877651 111111111011111111011256999998
Q ss_pred cC--------cccHHHHHHHHccCcccCeEEEEEeCC
Q 026122 153 RA--------VAEMRILAEYCLPLVRVGGLFVAAKGH 181 (243)
Q Consensus 153 ~~--------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (243)
.- .......-+...+..++||.++++...
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 42 222333334455677899998888743
No 353
>PRK11524 putative methyltransferase; Provisional
Probab=90.74 E-value=0.51 Score=40.69 Aligned_cols=73 Identities=14% Similarity=0.045 Sum_probs=46.7
Q ss_pred CEEEEEccccccccCCcCCCCceEEEEcCc--------------------ccHHHHHHHHccCcccCeEEEEEeCCCcHH
Q 026122 126 NVQIVRGRAETLGKDVSFREQYDVAVARAV--------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQE 185 (243)
Q Consensus 126 ~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 185 (243)
+.+++++|..+..... ..+++|+|+++.. .-+..+++++.++|||||.+++..+.....
T Consensus 8 ~~~i~~gD~~~~l~~l-~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~~~ 86 (284)
T PRK11524 8 AKTIIHGDALTELKKI-PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTENMP 86 (284)
T ss_pred CCEEEeccHHHHHHhc-ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchhhh
Confidence 4578889988753211 1368999999521 012578899999999999999876543322
Q ss_pred HHHHHHHHHHHhCCeeeE
Q 026122 186 EVKNSERAVQLMGASLLQ 203 (243)
Q Consensus 186 ~~~~~~~~l~~~g~~~~~ 203 (243)
. ...+.+.||....
T Consensus 87 ~----~~~~~~~~f~~~~ 100 (284)
T PRK11524 87 F----IDLYCRKLFTIKS 100 (284)
T ss_pred H----HHHHHhcCcceEE
Confidence 2 2333455665444
No 354
>PRK07806 short chain dehydrogenase; Provisional
Probab=90.66 E-value=2.9 Score=34.52 Aligned_cols=103 Identities=17% Similarity=0.040 Sum_probs=59.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHH-HHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNK-RCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFRE 145 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~-~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~ 145 (243)
++++|-.|+.. .++..+++.. .+.+|++++.+.. ..+......+..+ .++.++.+|+.+..... ...+
T Consensus 6 ~k~vlItGasg-giG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 6 GKTALVTGSSR-GIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CcEEEEECCCC-cHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 67899888654 4555665432 4678999887642 2333333333333 24778888887643110 0013
Q ss_pred CceEEEEcCcc-----------------cHHHHHHHHccCcccCeEEEEEeC
Q 026122 146 QYDVAVARAVA-----------------EMRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 146 ~fD~I~~~~~~-----------------~~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
..|+++.++.. ....+++.+.+.++.+|++++..+
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS 135 (248)
T PRK07806 84 GLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS 135 (248)
T ss_pred CCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence 57888865411 134567777777766777776653
No 355
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=90.46 E-value=1.2 Score=39.51 Aligned_cols=97 Identities=11% Similarity=0.137 Sum_probs=57.7
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc---c-cccccCCcCCCCc
Q 026122 73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR---A-ETLGKDVSFREQY 147 (243)
Q Consensus 73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d---~-~~~~~~~~~~~~f 147 (243)
+.++.+||=.|+|. |..++.+|+..+..+|+++|.++...+.+++ .+.. .++..+ . +.+... . ...+
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~--~~i~~~~~~~~~~v~~~-~-~~~~ 255 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT--HVINPKEEDLVAAIREI-T-GGGV 255 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc--EEecCCCcCHHHHHHHH-h-CCCC
Confidence 34578888888753 4555666766644479999999876665543 4432 222211 1 111110 1 2469
Q ss_pred eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
|+|+-.... ...+..+.+.++++|+++...
T Consensus 256 d~vld~~g~--~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 256 DYALDTTGV--PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred cEEEECCCC--cHHHHHHHHHhccCCEEEEeC
Confidence 999864322 234567778899999977654
No 356
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.40 E-value=3.6 Score=35.37 Aligned_cols=92 Identities=9% Similarity=0.075 Sum_probs=54.2
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc--------CC----------CCEEEEEccccccc
Q 026122 77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--------QL----------LNVQIVRGRAETLG 138 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~----------~~v~~~~~d~~~~~ 138 (243)
.+|.=||+|+=..++.......+.+|+.+|.+++.++.+++.+++. .+ .++++ ..|..+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHHh
Confidence 3677788875433333333334679999999999888776654221 11 12222 23333211
Q ss_pred cCCcCCCCceEEEEcCccc---HHHHHHHHccCcccCeEE
Q 026122 139 KDVSFREQYDVAVARAVAE---MRILAEYCLPLVRVGGLF 175 (243)
Q Consensus 139 ~~~~~~~~fD~I~~~~~~~---~~~~l~~~~~~LkpgG~l 175 (243)
...|+|+.....+ ...+++.+.+.++++-.+
T Consensus 83 ------~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 116 (287)
T PRK08293 83 ------KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIF 116 (287)
T ss_pred ------cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEE
Confidence 4579998754433 466777888888777554
No 357
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=90.35 E-value=2.1 Score=38.12 Aligned_cols=99 Identities=10% Similarity=0.015 Sum_probs=56.5
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEE--ccccc-cccCCcCCCCc
Q 026122 73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVR--GRAET-LGKDVSFREQY 147 (243)
Q Consensus 73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~--~d~~~-~~~~~~~~~~f 147 (243)
++++.+||=.||| .|..++.+|+.....+|+++|.+++..+.+++ +|... +.... .++.+ +... ..+.+
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~--~~~g~ 256 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEI--TDGGV 256 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHH--hCCCC
Confidence 3458899989875 24455666766543489999999987666643 45432 11110 11111 1100 01358
Q ss_pred eEEEEcCcccHHHHHHHHccCcccC-eEEEEEe
Q 026122 148 DVAVARAVAEMRILAEYCLPLVRVG-GLFVAAK 179 (243)
Q Consensus 148 D~I~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 179 (243)
|+|+-..-. ...+..+.+.++++ |+++...
T Consensus 257 d~vid~~G~--~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 257 DYSFECIGN--VNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred CEEEECCCC--HHHHHHHHHHhhcCCCeEEEEe
Confidence 998864321 23455666788886 9877654
No 358
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=90.35 E-value=1.3 Score=39.94 Aligned_cols=100 Identities=15% Similarity=0.031 Sum_probs=56.1
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc---cccc-cccCCcCCCCc
Q 026122 73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG---RAET-LGKDVSFREQY 147 (243)
Q Consensus 73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~-~~~~~~~~~~f 147 (243)
+.++.+||=.|+| .|..++.+|+......|+.+|.+++..+.+++ +|.. .+... +..+ +... .....+
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga~--~v~~~~~~~~~~~v~~~-~~~~g~ 255 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGCE--TVDLSKDATLPEQIEQI-LGEPEV 255 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCCe--EEecCCcccHHHHHHHH-cCCCCC
Confidence 3457777777775 33344556666544457777888876665543 4542 12211 1111 1100 001358
Q ss_pred eEEEEcCccc------------HHHHHHHHccCcccCeEEEEEe
Q 026122 148 DVAVARAVAE------------MRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 148 D~I~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
|+++-..-.. ....++.+.+.+++||++++.-
T Consensus 256 Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 256 DCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred cEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 9998643221 1246777888999999988754
No 359
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.27 E-value=0.79 Score=41.01 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=55.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccc
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL 137 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 137 (243)
.++.+|+|.+|-.|.-+..+|... +..++.|.|.+.+..+..++..+..|...++...+|....
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t 276 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT 276 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC
Confidence 347899999999999888887654 4689999999999999999999999988888889998875
No 360
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=90.26 E-value=1.9 Score=38.25 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=53.1
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEE-ccccccccCCcCCCCceEEE
Q 026122 74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR-GRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~fD~I~ 151 (243)
.++.+||=.|+| .|..++.+|+.. +.+|++++.+++.. ...++++|... ++. .+...+... .+.+|+|+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~---~~~~~~~Ga~~--vi~~~~~~~~~~~---~~~~D~vi 252 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKE---DEAINRLGADS--FLVSTDPEKMKAA---IGTMDYII 252 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchh---hhHHHhCCCcE--EEcCCCHHHHHhh---cCCCCEEE
Confidence 347788888875 344455566665 56899998876432 22334456532 221 111111111 13589998
Q ss_pred EcCcccHHHHHHHHccCcccCeEEEEE
Q 026122 152 ARAVAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
-..- . ...++.+.+.|++||+++..
T Consensus 253 d~~g-~-~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 253 DTVS-A-VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred ECCC-C-HHHHHHHHHHhcCCcEEEEe
Confidence 5432 1 22456677889999998754
No 361
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=90.13 E-value=2.4 Score=37.10 Aligned_cols=98 Identities=18% Similarity=0.138 Sum_probs=56.5
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEcc----ccccccCCcCCC
Q 026122 73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGR----AETLGKDVSFRE 145 (243)
Q Consensus 73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d----~~~~~~~~~~~~ 145 (243)
+.++.+||-.|+|. |..++.+|+..+ .+ |++++.+++..+.+++ .+...+ .....+ ..++... ....
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~-~~~~ 233 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFG-ATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAEL-LGGK 233 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHH-hCCC
Confidence 34578888887764 555666776654 55 9999998876665543 343321 111111 1111110 0014
Q ss_pred CceEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122 146 QYDVAVARAVAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 146 ~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
.+|+|+..... ...+..+.+.|+++|+++..
T Consensus 234 ~~d~vld~~g~--~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 234 GPDVVIECTGA--ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CCCEEEECCCC--HHHHHHHHHHhhcCCEEEEE
Confidence 59999975332 23566778899999997754
No 362
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=89.73 E-value=12 Score=31.85 Aligned_cols=144 Identities=15% Similarity=0.106 Sum_probs=94.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-CcCCCCceEEEE
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-VSFREQYDVAVA 152 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~fD~I~~ 152 (243)
+++.+ |..=|||=.++..+. +++-++.++|+.++-....+++.. +..++++.++|-...... ....++=-+|+.
T Consensus 88 N~~~~-l~~YpGSP~lA~~ll--R~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LPP~erRglVLI 162 (279)
T COG2961 88 NPGGG-LRYYPGSPLLARQLL--REQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLPPKERRGLVLI 162 (279)
T ss_pred CCCCC-cccCCCCHHHHHHHc--chhceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhCCCCCcceEEEe
Confidence 43444 788888876654444 345689999999987777777765 445799999986542111 000134566776
Q ss_pred cC----cccHHHHHHHHccCcc--cCeEEEEEeCCCcHHHHHHHHHHHHHhCC-eeeEEEEEecCCCCC----ceEEEEE
Q 026122 153 RA----VAEMRILAEYCLPLVR--VGGLFVAAKGHDPQEEVKNSERAVQLMGA-SLLQLCSVESQSPFG----QRTAVVC 221 (243)
Q Consensus 153 ~~----~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~~~~----~r~~v~~ 221 (243)
.. -.++..+++.+...++ ++|...+.......+++..+.+.++..|. ++..++--..|..+. ...++++
T Consensus 163 DPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~~~i~kiL~iEL~VrP~~d~~gm~gSGMivI 242 (279)
T COG2961 163 DPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEALGIRKILQIELAVRPDSDPRGMNGSGMIVI 242 (279)
T ss_pred CCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhhcCccceeeeEEEecCCCCCCCccceeEEEE
Confidence 43 3367777777777776 58898898888888899999999999998 444444322343332 4555555
Q ss_pred E
Q 026122 222 L 222 (243)
Q Consensus 222 ~ 222 (243)
.
T Consensus 243 N 243 (279)
T COG2961 243 N 243 (279)
T ss_pred C
Confidence 4
No 363
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=89.69 E-value=3 Score=36.28 Aligned_cols=104 Identities=18% Similarity=0.181 Sum_probs=59.1
Q ss_pred CeEEEEcCCC-C-hHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEE-ccccccc---cCCcCCCCceEE
Q 026122 77 LKLVDVGTGA-G-LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR-GRAETLG---KDVSFREQYDVA 150 (243)
Q Consensus 77 ~~VLDiGcG~-G-~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~---~~~~~~~~fD~I 150 (243)
.+|+=+|||. | .++..|++. +..|+.++.+++.++..++ ..|+ .+.. +...... ......+.||+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~---~~Gl---~i~~~g~~~~~~~~~~~~~~~~~~D~v 74 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQ---AGGL---TLVEQGQASLYAIPAETADAAEPIHRL 74 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhh---cCCe---EEeeCCcceeeccCCCCcccccccCEE
Confidence 5788899983 3 345555533 5789999998754443332 2222 1110 1100000 000112579998
Q ss_pred EEcC-cccHHHHHHHHccCcccCeEEEEEe-CCCcHHHHH
Q 026122 151 VARA-VAEMRILAEYCLPLVRVGGLFVAAK-GHDPQEEVK 188 (243)
Q Consensus 151 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~ 188 (243)
+... ..+....++.+.+.+.++..++... |-...+.+.
T Consensus 75 iv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~ 114 (305)
T PRK05708 75 LLACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVA 114 (305)
T ss_pred EEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHH
Confidence 8754 2356788889999999998877666 444444443
No 364
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=89.67 E-value=2.3 Score=35.21 Aligned_cols=78 Identities=13% Similarity=0.004 Sum_probs=49.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC---------CcCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD---------VSFR 144 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---------~~~~ 144 (243)
+++||=.|+ +|.++..+++.+ .+++|+++|.++...+...+.++..+..++.++..|+...... ....
T Consensus 12 ~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 90 (247)
T PRK08945 12 DRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQF 90 (247)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHHh
Confidence 778999995 556666666543 4679999999987666555555554444567777776421100 0001
Q ss_pred CCceEEEEcC
Q 026122 145 EQYDVAVARA 154 (243)
Q Consensus 145 ~~fD~I~~~~ 154 (243)
++.|.|+.++
T Consensus 91 ~~id~vi~~A 100 (247)
T PRK08945 91 GRLDGVLHNA 100 (247)
T ss_pred CCCCEEEECC
Confidence 4689998764
No 365
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=89.66 E-value=3.1 Score=36.88 Aligned_cols=100 Identities=11% Similarity=0.010 Sum_probs=55.6
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEc--cccccccCCcCCCCce
Q 026122 73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRG--RAETLGKDVSFREQYD 148 (243)
Q Consensus 73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~--d~~~~~~~~~~~~~fD 148 (243)
++++.+||=.|+| .|..++.+|+..+..+|+++|.+++..+.++ .+|...+ ..... +..+.... ...+.+|
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~----~lGa~~~i~~~~~~~~~~~~v~~-~~~~g~d 258 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAK----KFGATDCVNPKDHDKPIQQVLVE-MTDGGVD 258 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HcCCCEEEcccccchHHHHHHHH-HhCCCCc
Confidence 4558899888864 2334455566654337999999998766554 3554321 11110 11110000 0013699
Q ss_pred EEEEcCcccHHHHHHHHccCcccC-eEEEEEe
Q 026122 149 VAVARAVAEMRILAEYCLPLVRVG-GLFVAAK 179 (243)
Q Consensus 149 ~I~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 179 (243)
+|+-..-. ...+..+.+.++++ |+++...
T Consensus 259 ~vid~~g~--~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 259 YTFECIGN--VKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred EEEECCCC--hHHHHHHHHhhccCCCeEEEEc
Confidence 99864321 23556667788887 8877653
No 366
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.66 E-value=0.17 Score=39.66 Aligned_cols=76 Identities=22% Similarity=0.289 Sum_probs=48.2
Q ss_pred eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC---
Q 026122 78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--- 154 (243)
Q Consensus 78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~--- 154 (243)
-.+-||||.=.. .|++..+-++-.++ +.+++-...+..+. +++.|+|.+.-
T Consensus 5 ~kv~ig~G~~r~-------npgWi~~d~ed~~~----------------vdlvc~As~e~~F~---dns~d~iyaeHvlE 58 (185)
T COG4627 5 EKVKIGAGGKRV-------NPGWIITDVEDRPE----------------VDLVCRASNESMFE---DNSVDAIYAEHVLE 58 (185)
T ss_pred eEEEEecccccc-------CCCceeeehhcccc----------------cchhhhhhhhccCC---CcchHHHHHHHHHH
Confidence 457789987544 47777665554431 22222222223333 27899999853
Q ss_pred ---cccHHHHHHHHccCcccCeEEEEEe
Q 026122 155 ---VAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 155 ---~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
...-..+++++++.|||||++-+..
T Consensus 59 Hlt~~Eg~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 59 HLTYDEGTSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred HHhHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence 2345678899999999999988754
No 367
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=89.46 E-value=1.3 Score=38.92 Aligned_cols=100 Identities=13% Similarity=0.059 Sum_probs=59.0
Q ss_pred CCCCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceE
Q 026122 73 CNSNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDV 149 (243)
Q Consensus 73 ~~~~~~VLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~ 149 (243)
++++.+||=.|+. -|..++.+|+.... .++++-.+++..+ .++++|-+. +.+...|+.+-.........+|+
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDv 214 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQVRELTGGKGVDV 214 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHHHHHcCCCCceE
Confidence 3558899999854 45577888888754 6666766665333 445566542 33334443332111111136999
Q ss_pred EEEcCcccHHHHHHHHccCcccCeEEEEEeC
Q 026122 150 AVARAVAEMRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
|+-.-- ...+....+.|+++|+++.+-.
T Consensus 215 v~D~vG---~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 215 VLDTVG---GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred EEECCC---HHHHHHHHHHhccCCEEEEEec
Confidence 997432 2334456678899999887653
No 368
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=89.38 E-value=3.9 Score=35.34 Aligned_cols=95 Identities=19% Similarity=0.174 Sum_probs=57.0
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122 74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
.++.+||-.||| .|..++.+|+.. +.+|++++.+++..+.+++ .+... ++..+-.+..... .+.+|+++.
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~----~g~~~--~~~~~~~~~~~~~--~~~~d~vi~ 231 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARK----LGADE--VVDSGAELDEQAA--AGGADVILV 231 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----hCCcE--EeccCCcchHHhc--cCCCCEEEE
Confidence 457889999886 555555666654 5789999999886665532 34321 1111111111000 145899986
Q ss_pred cCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 153 RAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
.... ...+..+.+.|+++|.++...
T Consensus 232 ~~~~--~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 232 TVVS--GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred CCCc--HHHHHHHHHhcccCCEEEEEC
Confidence 4322 235567788999999987653
No 369
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=89.32 E-value=3.8 Score=37.51 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=54.3
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122 75 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 75 ~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
.+++|+=+|+|. |......++.. +.+|+.+|+++.....+ ...|. ++. ++.+.. ..+|+|+..
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A----~~~G~---~v~--~l~eal------~~aDVVI~a 274 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQA----AMDGF---RVM--TMEEAA------ELGDIFVTA 274 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHH----HhcCC---Eec--CHHHHH------hCCCEEEEC
Confidence 388999999984 22222223333 57999999998643222 22232 221 333321 458999875
Q ss_pred CcccHHHHHH-HHccCcccCeEEEEEeCCCcHHHH
Q 026122 154 AVAEMRILAE-YCLPLVRVGGLFVAAKGHDPQEEV 187 (243)
Q Consensus 154 ~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~~~~~~ 187 (243)
. .. ..++. .....+|+|++++..-..+..-++
T Consensus 275 T-G~-~~vI~~~~~~~mK~GailiNvG~~d~Eid~ 307 (425)
T PRK05476 275 T-GN-KDVITAEHMEAMKDGAILANIGHFDNEIDV 307 (425)
T ss_pred C-CC-HHHHHHHHHhcCCCCCEEEEcCCCCCccCh
Confidence 3 22 23444 677889999987765444433333
No 370
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=89.19 E-value=1.1 Score=39.55 Aligned_cols=99 Identities=14% Similarity=0.068 Sum_probs=62.1
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc----cccccccCCcCCCC
Q 026122 72 SCNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG----RAETLGKDVSFREQ 146 (243)
Q Consensus 72 ~~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~----d~~~~~~~~~~~~~ 146 (243)
..+++.+|.=+||| -|..++.-|+.....++++||++++.+++|++ +|.. .+++. |+-+.... ..+..
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGAT--~~vn~~~~~~vv~~i~~-~T~gG 254 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGAT--HFVNPKEVDDVVEAIVE-LTDGG 254 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCCc--eeecchhhhhHHHHHHH-hcCCC
Confidence 45679999999998 57777777888778899999999998887765 4432 23322 22221110 00135
Q ss_pred ceEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 147 YDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 147 fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
.|.++-. ..+ ...++.+...+.++|..++.-
T Consensus 255 ~d~~~e~-~G~-~~~~~~al~~~~~~G~~v~iG 285 (366)
T COG1062 255 ADYAFEC-VGN-VEVMRQALEATHRGGTSVIIG 285 (366)
T ss_pred CCEEEEc-cCC-HHHHHHHHHHHhcCCeEEEEe
Confidence 6776532 122 225566666777788877654
No 371
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=89.15 E-value=5.3 Score=31.95 Aligned_cols=99 Identities=13% Similarity=0.123 Sum_probs=57.7
Q ss_pred EEEEcCCCChHHHHHHH--HCCCCEEEEEeCCHHHHHHHHHHHHH--------cCC---------CCEEEEEcccccccc
Q 026122 79 LVDVGTGAGLPGLVLAI--ACPDWKVTLLESMNKRCVFLEHAVSL--------TQL---------LNVQIVRGRAETLGK 139 (243)
Q Consensus 79 VLDiGcG~G~~~~~la~--~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~---------~~v~~~~~d~~~~~~ 139 (243)
|.=||+| ..|..+|. ...+.+|+.+|.+++.++.+++.+++ ..+ .+++ ...|++++
T Consensus 2 V~ViGaG--~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~-- 76 (180)
T PF02737_consen 2 VAVIGAG--TMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA-- 76 (180)
T ss_dssp EEEES-S--HHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred EEEEcCC--HHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence 4446665 44433332 33478999999999999888776654 111 1243 34455554
Q ss_pred CCcCCCCceEEEEcCccc---HHHHHHHHccCcccCeEEEEEeCCCcHHHH
Q 026122 140 DVSFREQYDVAVARAVAE---MRILAEYCLPLVRVGGLFVAAKGHDPQEEV 187 (243)
Q Consensus 140 ~~~~~~~fD~I~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 187 (243)
...|+|+-....+ -.++++++.+.+.|+-.|.-..+.-...++
T Consensus 77 -----~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~l 122 (180)
T PF02737_consen 77 -----VDADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISEL 122 (180)
T ss_dssp -----CTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHH
T ss_pred -----hhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHH
Confidence 2589999754333 478999999999998776655454444444
No 372
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.11 E-value=7.2 Score=33.53 Aligned_cols=92 Identities=15% Similarity=0.161 Sum_probs=55.1
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-------CC----------CCEEEEEcccccccc
Q 026122 77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-------QL----------LNVQIVRGRAETLGK 139 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~----------~~v~~~~~d~~~~~~ 139 (243)
.+|.=||+|+=..++.......+.+|+.+|.+++.++.+.+..+++ +. .++++ ..+.+.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~-- 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLEDL-- 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHHh--
Confidence 4677788875443333333344679999999999887755433221 21 11332 2233221
Q ss_pred CCcCCCCceEEEEcCccc---HHHHHHHHccCcccCeEEE
Q 026122 140 DVSFREQYDVAVARAVAE---MRILAEYCLPLVRVGGLFV 176 (243)
Q Consensus 140 ~~~~~~~fD~I~~~~~~~---~~~~l~~~~~~LkpgG~l~ 176 (243)
...|+|+.....+ ...+++.+.+.++++..++
T Consensus 82 -----~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 82 -----ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred -----cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 4579998754332 4567788888888887654
No 373
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.08 E-value=4.5 Score=34.93 Aligned_cols=97 Identities=16% Similarity=0.108 Sum_probs=57.1
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc-CCcCCCCceEE
Q 026122 74 NSNLKLVDVGTG-AGLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK-DVSFREQYDVA 150 (243)
Q Consensus 74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~fD~I 150 (243)
.++.+||-+|+| .|..++.+|+.. +.+ |++++.+++..+.++ +.+.. .++..+-.+... .......+|++
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~----~~g~~--~~~~~~~~~~~~~~~~~~~~vd~v 230 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAK----KLGAT--ETVDPSREDPEAQKEDNPYGFDVV 230 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHH----HhCCe--EEecCCCCCHHHHHHhcCCCCcEE
Confidence 347899999865 255556667665 455 899999988666553 33432 222221111100 00012569999
Q ss_pred EEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 151 VARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+..... ...+..+.+.|+++|+++...
T Consensus 231 ~~~~~~--~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 231 IEATGV--PKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred EECCCC--hHHHHHHHHHHhcCCEEEEEe
Confidence 975322 345667778899999987653
No 374
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.06 E-value=1.2 Score=40.16 Aligned_cols=114 Identities=21% Similarity=0.217 Sum_probs=62.1
Q ss_pred CeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc----------ccc--CCc
Q 026122 77 LKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----------LGK--DVS 142 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----------~~~--~~~ 142 (243)
.+|-=+|=| ++|+.+|.. ..+.+|+|+|+++..++...+-. ..+..-+..+ +.. ...
T Consensus 10 ~~I~ViGLG--YVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~-------~~i~e~~~~~~v~~~v~~g~lraTtd~~ 80 (436)
T COG0677 10 ATIGVIGLG--YVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGE-------SYIEEPDLDEVVKEAVESGKLRATTDPE 80 (436)
T ss_pred eEEEEEccc--cccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCc-------ceeecCcHHHHHHHHHhcCCceEecChh
Confidence 455556555 445455543 34689999999998877653211 1111111111 000 000
Q ss_pred CCCCceEEEEc-----------CcccHHHHHHHHccCcccCeEEEEEe--CCCcHHHHHHHHHHHHH-hCCee
Q 026122 143 FREQYDVAVAR-----------AVAEMRILAEYCLPLVRVGGLFVAAK--GHDPQEEVKNSERAVQL-MGASL 201 (243)
Q Consensus 143 ~~~~fD~I~~~-----------~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~~~~~l~~-~g~~~ 201 (243)
.-...|+++.. .++-.....+.+.+.|++|-.+++.+ .+...+++...+. +. .|+..
T Consensus 81 ~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~pll--e~~sgL~~ 151 (436)
T COG0677 81 ELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLL--EERSGLKF 151 (436)
T ss_pred hcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHH--hhcCCCcc
Confidence 00256766642 12346778888999999998877766 3455666544332 33 55654
No 375
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=88.95 E-value=4 Score=36.34 Aligned_cols=112 Identities=16% Similarity=0.123 Sum_probs=65.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHCC-CCEEEE-EeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTL-LESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~-vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
..+|.=||||.|..-+......+ +.+++| +|.+++ .+++.++++|+. ...|++++... ...|+|...
T Consensus 3 ~~rVgViG~~~G~~h~~al~~~~~~~eLvaV~d~~~e---rA~~~A~~~gi~----~y~~~eell~d----~Di~~V~ip 71 (343)
T TIGR01761 3 VQSVVVCGTRFGQFYLAAFAAAPERFELAGILAQGSE---RSRALAHRLGVP----LYCEVEELPDD----IDIACVVVR 71 (343)
T ss_pred CcEEEEEeHHHHHHHHHHHHhCCCCcEEEEEEcCCHH---HHHHHHHHhCCC----ccCCHHHHhcC----CCEEEEEeC
Confidence 46889999977754222222345 677777 688775 466666777653 34677776521 346777763
Q ss_pred C-cc--cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeee
Q 026122 154 A-VA--EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLL 202 (243)
Q Consensus 154 ~-~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~ 202 (243)
. .. .-. +.+...|+.|=.+++++.-. .++..++.+..++.|....
T Consensus 72 t~~P~~~H~---e~a~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 72 SAIVGGQGS---ALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred CCCCCccHH---HHHHHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCEEE
Confidence 2 11 112 22334555565556655543 5777777777777776543
No 376
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=88.88 E-value=4.6 Score=34.29 Aligned_cols=136 Identities=16% Similarity=0.071 Sum_probs=86.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCC------------CCEEEEEeCCHHHHHHH-------------HHHHH----------
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACP------------DWKVTLLESMNKRCVFL-------------EHAVS---------- 120 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~------------~~~v~~vD~s~~~~~~a-------------~~~~~---------- 120 (243)
.-.|+++|-|+|...+.+-+..+ ..++++++.++..-..+ .+...
T Consensus 59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~ 138 (252)
T COG4121 59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA 138 (252)
T ss_pred ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence 45799999999998766655432 24577887654322111 11110
Q ss_pred ---HcCCCCEEEEEccccccccCCcCCC---CceEEEEcCcc---c----HHHHHHHHccCcccCeEEEEEeCCCcHHHH
Q 026122 121 ---LTQLLNVQIVRGRAETLGKDVSFRE---QYDVAVARAVA---E----MRILAEYCLPLVRVGGLFVAAKGHDPQEEV 187 (243)
Q Consensus 121 ---~~~~~~v~~~~~d~~~~~~~~~~~~---~fD~I~~~~~~---~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 187 (243)
..|..+..++.+|+.+..++. +. ++|+.+-.+.+ + -.+++..+++..+|||.+.-... .
T Consensus 139 r~~~~g~~~l~l~~gd~~~~~p~~--~~~~~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t~ss------A 210 (252)
T COG4121 139 AAVRHGLLLLGLVIGDAGDGIPPV--PRRRPGTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLATFAA------A 210 (252)
T ss_pred HhhhcchheeeeeeeehhhcCCcc--cccccCccEEecCCccccCChhhccHHHHHHHHhhcCCCCceechHH------H
Confidence 012334678888887765432 23 68999987643 2 27788899999999999664332 3
Q ss_pred HHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEee
Q 026122 188 KNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS 224 (243)
Q Consensus 188 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~ 224 (243)
.-.++.+.++||++... ++....|.+....+.
T Consensus 211 ~~vRr~L~~aGF~v~~r-----~g~grKRem~~a~~~ 242 (252)
T COG4121 211 IAVRRRLEQAGFTVEKR-----TGRGKKRELLRGVKI 242 (252)
T ss_pred HHHHHHHHHcCceeeec-----CCccccccchhhhcc
Confidence 44577888999988765 344556776665553
No 377
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=88.70 E-value=2.1 Score=37.27 Aligned_cols=91 Identities=12% Similarity=0.126 Sum_probs=55.9
Q ss_pred CeEEEEcC--CCChHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc---cccc-cccCCcCCCCceE
Q 026122 77 LKLVDVGT--GAGLPGLVLAIACPDW-KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG---RAET-LGKDVSFREQYDV 149 (243)
Q Consensus 77 ~~VLDiGc--G~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~-~~~~~~~~~~fD~ 149 (243)
.+||=.|+ |.|..++.+|+.. ++ +|++++.+++..+.+++ .+|.+. ++.. ++.+ +... ....+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~---~lGa~~--vi~~~~~~~~~~i~~~--~~~gvd~ 227 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKS---ELGFDA--AINYKTDNVAERLREL--CPEGVDV 227 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHH---hcCCcE--EEECCCCCHHHHHHHH--CCCCceE
Confidence 78888886 4666777788776 55 89999999875555443 255532 2221 1111 1100 1146999
Q ss_pred EEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122 150 AVARAVAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
|+...... .+..+.+.|+++|+++..
T Consensus 228 vid~~g~~---~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 228 YFDNVGGE---ISDTVISQMNENSHIILC 253 (345)
T ss_pred EEECCCcH---HHHHHHHHhccCCEEEEE
Confidence 99643221 246777899999998864
No 378
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=88.55 E-value=4.1 Score=35.01 Aligned_cols=88 Identities=22% Similarity=0.203 Sum_probs=53.6
Q ss_pred CCCCeEEEEcCCCChHHHH---HHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEE
Q 026122 74 NSNLKLVDVGTGAGLPGLV---LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA 150 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~---la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I 150 (243)
.++.+||=.|+ |.++.. +|+.. +.+|++++.+++..+.+++ +|...+... .+. .. ...+|++
T Consensus 154 ~~g~~vlV~g~--g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~----~g~~~~~~~----~~~-~~---~~~~d~v 218 (319)
T cd08242 154 TPGDKVAVLGD--GKLGLLIAQVLALT-GPDVVLVGRHSEKLALARR----LGVETVLPD----EAE-SE---GGGFDVV 218 (319)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----cCCcEEeCc----ccc-cc---CCCCCEE
Confidence 44788888875 455544 44444 5689999999887666654 454321111 111 11 1569999
Q ss_pred EEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122 151 VARAVAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
+-.... ...++.+.+.|+++|+++..
T Consensus 219 id~~g~--~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 219 VEATGS--PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred EECCCC--hHHHHHHHHHhhcCCEEEEE
Confidence 975322 33456667788999998763
No 379
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=88.51 E-value=2.4 Score=31.48 Aligned_cols=82 Identities=20% Similarity=0.121 Sum_probs=52.5
Q ss_pred CCeEEEEcCCCCh-HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE-c
Q 026122 76 NLKLVDVGTGAGL-PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA-R 153 (243)
Q Consensus 76 ~~~VLDiGcG~G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~-~ 153 (243)
.++|+++|-|-=. ++-.|++. ++.|+++|+++. ++. ..++++..|+.+-... .-...|+|.| +
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~-------~a~----~g~~~v~DDitnP~~~--iY~~A~lIYSiR 78 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK-------TAP----EGLRFVVDDITNPNIS--IYEGADLIYSIR 78 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc-------cCc----ccceEEEccCCCccHH--HhhCccceeecC
Confidence 4599999998643 34444433 589999999985 111 2478999999875432 1256899998 4
Q ss_pred CcccHHHHHHHHccCcccC
Q 026122 154 AVAEMRILAEYCLPLVRVG 172 (243)
Q Consensus 154 ~~~~~~~~l~~~~~~Lkpg 172 (243)
..+++...+-.+.+.++-.
T Consensus 79 pppEl~~~ildva~aVga~ 97 (129)
T COG1255 79 PPPELQSAILDVAKAVGAP 97 (129)
T ss_pred CCHHHHHHHHHHHHhhCCC
Confidence 4445554444555555443
No 380
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=88.34 E-value=5.9 Score=28.75 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=66.3
Q ss_pred eEEEEcCCCChHHH--HHHHHCCCCEEE-EEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 78 KLVDVGTGAGLPGL--VLAIACPDWKVT-LLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 78 ~VLDiGcG~G~~~~--~la~~~~~~~v~-~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
+|.=||+|...-.. .+....++.+++ .+|.+++..+ +..++.+.+ ...|++++... ...|+|+...
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~---~~~~~~~~~----~~~~~~~ll~~----~~~D~V~I~t 70 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAE---AFAEKYGIP----VYTDLEELLAD----EDVDAVIIAT 70 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHH---HHHHHTTSE----EESSHHHHHHH----TTESEEEEES
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHH---HHHHHhccc----chhHHHHHHHh----hcCCEEEEec
Confidence 56678887653322 223333667776 5799886444 335555553 55677776432 4699998754
Q ss_pred cc-cHHHHHHHHccCcccCeEEEEEeC-CCcHHHHHHHHHHHHHhCCe
Q 026122 155 VA-EMRILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGAS 200 (243)
Q Consensus 155 ~~-~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~l~~~g~~ 200 (243)
.. ...++ +...++.|-.+++..+ ....++..++.+..++.|..
T Consensus 71 p~~~h~~~---~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 71 PPSSHAEI---AKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp SGGGHHHH---HHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred CCcchHHH---HHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence 33 22333 3345555667777664 35678888888888888864
No 381
>PLN02494 adenosylhomocysteinase
Probab=88.28 E-value=3.7 Score=38.06 Aligned_cols=88 Identities=13% Similarity=0.057 Sum_probs=52.3
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
+++|+=+|+|. |......++.+ +++|+.+|.++.....+ ...|.. +. +.++.. ...|+|+...
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA----~~~G~~---vv--~leEal------~~ADVVI~tT 317 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQA----LMEGYQ---VL--TLEDVV------SEADIFVTTT 317 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHH----HhcCCe---ec--cHHHHH------hhCCEEEECC
Confidence 88999999983 33222333333 67999999998533222 223332 22 333321 3579998732
Q ss_pred cccHHHHHHHHccCcccCeEEEEEeC
Q 026122 155 VAEMRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 155 ~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
.+...+.+...+.+|+||.++-...
T Consensus 318 -Gt~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 318 -GNKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred -CCccchHHHHHhcCCCCCEEEEcCC
Confidence 2333344677789999999776543
No 382
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=88.22 E-value=4.4 Score=32.62 Aligned_cols=88 Identities=20% Similarity=0.195 Sum_probs=45.9
Q ss_pred CCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHH------------HHHcC-CCCEEEEEccccccccCCcCCCCceE
Q 026122 85 GAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHA------------VSLTQ-LLNVQIVRGRAETLGKDVSFREQYDV 149 (243)
Q Consensus 85 G~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~------------~~~~~-~~~v~~~~~d~~~~~~~~~~~~~fD~ 149 (243)
|.|++|+.+|.. ..+.+|+|+|++++.++..++- .++.. -.+..+. .|..+.. ...|+
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai------~~adv 79 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI------KDADV 79 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH------HH-SE
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh------hccce
Confidence 455555555543 3468999999999877766431 11110 1122222 2333311 34677
Q ss_pred EEEcC-----------cccHHHHHHHHccCcccCeEEEEEe
Q 026122 150 AVARA-----------VAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 150 I~~~~-----------~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
++..- ...+...++.+.+.++++-.+++.+
T Consensus 80 ~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~S 120 (185)
T PF03721_consen 80 VFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIES 120 (185)
T ss_dssp EEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred EEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEcc
Confidence 77521 2347888899999999966655544
No 383
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=88.12 E-value=2.7 Score=36.69 Aligned_cols=97 Identities=11% Similarity=0.041 Sum_probs=58.8
Q ss_pred CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEc-cccc-cccCCcCCCCc
Q 026122 73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRG-RAET-LGKDVSFREQY 147 (243)
Q Consensus 73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~-d~~~-~~~~~~~~~~f 147 (243)
+.++.+||=.|+ |.|..++.+|+.. +.+|++++.+++..+.+++. +|...+ ..... +..+ +... ....+
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~--~~~gv 222 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRY--FPNGI 222 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHh--CCCCc
Confidence 455889998886 3555666777765 57899999988765555431 454321 11111 2211 1111 01469
Q ss_pred eEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122 148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
|+|+-.... ..+..+.+.|+++|+++..
T Consensus 223 d~v~d~~g~---~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 223 DIYFDNVGG---KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred EEEEECCCH---HHHHHHHHHhccCcEEEEe
Confidence 999864322 4567778899999998764
No 384
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=88.10 E-value=1.7 Score=37.90 Aligned_cols=96 Identities=18% Similarity=0.159 Sum_probs=56.4
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc---ccccccCCcCCCCce
Q 026122 74 NSNLKLVDVGTGA-GLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR---AETLGKDVSFREQYD 148 (243)
Q Consensus 74 ~~~~~VLDiGcG~-G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d---~~~~~~~~~~~~~fD 148 (243)
.++.+||-.|+|+ |..++.+|+.. +.+ |++++.+++..+.++ ..+.. .++..+ ..++... .....+|
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~----~~g~~--~~~~~~~~~~~~~~~~-~~~~~~d 229 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVAR----ELGAD--DTINPKEEDVEKVREL-TEGRGAD 229 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HcCCC--EEecCccccHHHHHHH-hCCCCCC
Confidence 4477899998754 55666677665 455 999999887655443 34442 222211 1111110 0013499
Q ss_pred EEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 149 VAVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+++..... ...+..+.+.|+++|.++...
T Consensus 230 ~vld~~g~--~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 230 LVIEAAGS--PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred EEEECCCC--HHHHHHHHHHhhcCCEEEEEc
Confidence 99975322 345567788899999977653
No 385
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=87.99 E-value=1.6 Score=39.31 Aligned_cols=46 Identities=13% Similarity=0.243 Sum_probs=33.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVS 120 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~ 120 (243)
+.++++||-|.+| |..++.+....| .+|++||+|+......+-...
T Consensus 33 i~~~d~vl~ItSa-G~N~L~yL~~~P-~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 33 IGPDDRVLTITSA-GCNALDYLLAGP-KRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCCCeEEEEccC-CchHHHHHhcCC-ceEEEEeCCHHHHHHHHHHHH
Confidence 4558899999665 555556655555 699999999988877765443
No 386
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=87.97 E-value=5.8 Score=33.55 Aligned_cols=117 Identities=12% Similarity=0.076 Sum_probs=71.3
Q ss_pred cCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc--CCcCCCCceEEEEcC----cc
Q 026122 83 GTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK--DVSFREQYDVAVARA----VA 156 (243)
Q Consensus 83 GcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~~~fD~I~~~~----~~ 156 (243)
..=+|.+.+.....++.-+.+++|+.+.-.+..+++.+. ..++++.+.|..+... .+. ..+=-+|+..- ..
T Consensus 63 ~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~--~~~v~v~~~DG~~~l~allPP-~~rRglVLIDPpYE~~~ 139 (245)
T PF04378_consen 63 RFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRR--DRRVRVHHRDGYEGLKALLPP-PERRGLVLIDPPYEQKD 139 (245)
T ss_dssp -EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--T--TS-EEEE-S-HHHHHHHH-S--TTS-EEEEE-----STT
T ss_pred CcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhcc--CCccEEEeCchhhhhhhhCCC-CCCCeEEEECCCCCCch
Confidence 344566665555556677999999999888877766553 2469999999766211 100 13455777752 34
Q ss_pred cHHHHHHHHccCcc--cCeEEEEEeCCCcHHHHHHHHHHHHHhCCeee
Q 026122 157 EMRILAEYCLPLVR--VGGLFVAAKGHDPQEEVKNSERAVQLMGASLL 202 (243)
Q Consensus 157 ~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~ 202 (243)
++..+.+.+...+| +.|.+++..+--...+...+.+.+++.|....
T Consensus 140 dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~~~~~~~ 187 (245)
T PF04378_consen 140 DYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKALGIKKV 187 (245)
T ss_dssp HHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHH-SSE-
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHhcCCCCe
Confidence 67777777777776 68998888877677788888898998887643
No 387
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=87.97 E-value=2.9 Score=36.50 Aligned_cols=98 Identities=20% Similarity=0.220 Sum_probs=54.0
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccc-cccCCcCCCCceEE
Q 026122 74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAET-LGKDVSFREQYDVA 150 (243)
Q Consensus 74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~~~~~~~~~fD~I 150 (243)
.++.+||=.|+| .|..++.+|+..+..+|+++|.++...+.++ .++.+. +.....+... +... .....+|+|
T Consensus 165 ~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~i~~~-~~~~~~d~v 239 (345)
T cd08286 165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAK----KLGATHTVNSAKGDAIEQVLEL-TDGRGVDVV 239 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HhCCCceeccccccHHHHHHHH-hCCCCCCEE
Confidence 446777667653 2223344566654378999999887655444 345432 2221112111 1100 001469999
Q ss_pred EEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122 151 VARAVAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
+... .. ...++.+.+.|+++|.++..
T Consensus 240 ld~~-g~-~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 240 IEAV-GI-PATFELCQELVAPGGHIANV 265 (345)
T ss_pred EECC-CC-HHHHHHHHHhccCCcEEEEe
Confidence 8643 22 33567777899999997754
No 388
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=87.86 E-value=2.5 Score=40.17 Aligned_cols=80 Identities=14% Similarity=0.016 Sum_probs=49.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHc-----CC---CCEEEEEccccccccCCcC
Q 026122 74 NSNLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLT-----QL---LNVQIVRGRAETLGKDVSF 143 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~-----~~---~~v~~~~~d~~~~~~~~~~ 143 (243)
+.+.+||=.|+ +|.+|..+++.. .+.+|++++.+.+.++.....+... +. .+++++.+|+.+.......
T Consensus 78 ~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 78 KDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 34677777776 466676666543 4689999999987665444333321 11 2478899999874321111
Q ss_pred CCCceEEEEcC
Q 026122 144 REQYDVAVARA 154 (243)
Q Consensus 144 ~~~fD~I~~~~ 154 (243)
-+..|+||+++
T Consensus 157 LggiDiVVn~A 167 (576)
T PLN03209 157 LGNASVVICCI 167 (576)
T ss_pred hcCCCEEEEcc
Confidence 14689988764
No 389
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=87.83 E-value=3.1 Score=36.47 Aligned_cols=98 Identities=16% Similarity=0.095 Sum_probs=55.0
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccc-cccCCcCCCCceE
Q 026122 74 NSNLKLVDVGTG-AGLPGLVLAIACPDW-KVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAET-LGKDVSFREQYDV 149 (243)
Q Consensus 74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~~~~~~~~~fD~ 149 (243)
.++.+||=.|+| .|..++.+|+.. +. +|++++.+++..+.+++ +|.+. +.....++.+ +... .....+|+
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~-~~~~~~d~ 244 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAA-GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKL-TGGGGVDV 244 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHH-hCCCCCCE
Confidence 447788888764 233445556655 45 89999999887666543 35431 1111111111 1100 00134999
Q ss_pred EEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 150 AVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
|+-.... ...++.+.+.|+++|.++...
T Consensus 245 vid~~g~--~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 245 SFDCAGV--QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred EEECCCC--HHHHHHHHHhccCCCEEEEEc
Confidence 9975321 234566778899999977654
No 390
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.77 E-value=1.3 Score=38.71 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=35.5
Q ss_pred CCCCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Q 026122 71 SSCNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEH 117 (243)
Q Consensus 71 ~~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~ 117 (243)
..++++.+|.=+|+|. |.-.+.-|+..++.+++|||++++..+.+++
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 3567789999999985 4334445666777899999999998777654
No 391
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=87.76 E-value=4.7 Score=35.70 Aligned_cols=99 Identities=11% Similarity=0.062 Sum_probs=55.4
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEc--cccc-cccCCcCCCCc
Q 026122 73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRG--RAET-LGKDVSFREQY 147 (243)
Q Consensus 73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~--d~~~-~~~~~~~~~~f 147 (243)
+.++.+||=+|+| .|..++.+|+..+..+|+++|.+++..+.++ .+|...+ ..... +..+ +... ....+
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~----~~ga~~~i~~~~~~~~~~~~~~~~--~~~g~ 255 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAK----EFGATDFINPKDSDKPVSEVIREM--TGGGV 255 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HcCCCcEeccccccchHHHHHHHH--hCCCC
Confidence 3458888888864 2334455566654337999999987666653 3454321 11110 0011 1110 01358
Q ss_pred eEEEEcCcccHHHHHHHHccCcccC-eEEEEEe
Q 026122 148 DVAVARAVAEMRILAEYCLPLVRVG-GLFVAAK 179 (243)
Q Consensus 148 D~I~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 179 (243)
|+|+-..-. ...+..+.+.++++ |+++...
T Consensus 256 d~vid~~g~--~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 256 DYSFECTGN--ADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CEEEECCCC--hHHHHHHHHhcccCCCEEEEEc
Confidence 999964322 24556677788885 8877654
No 392
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=87.75 E-value=3.9 Score=36.54 Aligned_cols=100 Identities=18% Similarity=0.089 Sum_probs=54.4
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEc---cc-cccccCCcCCCC
Q 026122 73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRG---RA-ETLGKDVSFREQ 146 (243)
Q Consensus 73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~---d~-~~~~~~~~~~~~ 146 (243)
++++.+||=.|+| .|..++.+|+..+..+|++++.+++..+. ++++|.+.+ ..... +. ..+... .....
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~----~~~~g~~~~v~~~~~~~~~~~~~v~~~-~~g~g 275 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNL----AKEMGADYVFNPTKMRDCLSGEKVMEV-TKGWG 275 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH----HHHcCCCEEEcccccccccHHHHHHHh-cCCCC
Confidence 3457788777764 22233445555543379999998864433 344555321 11110 11 111100 00145
Q ss_pred ceEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122 147 YDVAVARAVAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 147 fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
+|+|+.. .......+..+.+.|+++|+++..
T Consensus 276 vDvvld~-~g~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 276 ADIQVEA-AGAPPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCEEEEC-CCCcHHHHHHHHHHHHcCCEEEEE
Confidence 9999864 333344567778889999998765
No 393
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=87.72 E-value=2 Score=37.58 Aligned_cols=110 Identities=18% Similarity=0.234 Sum_probs=68.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--------------------CCCEEEEEeCCHH--HHHHHHHHHHHc-----------
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--------------------PDWKVTLLESMNK--RCVFLEHAVSLT----------- 122 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--------------------~~~~v~~vD~s~~--~~~~a~~~~~~~----------- 122 (243)
..+||-||.|.|.--+++|..+ +..+|++||+.+- .+......+...
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4699999999987555555433 1258999998753 223333333222
Q ss_pred -CC---C--CEEEEEccccccccCCc---CC-CCceEEEE----c-----CcccHHHHHHHHccCcccCeEEEEEeCCCc
Q 026122 123 -QL---L--NVQIVRGRAETLGKDVS---FR-EQYDVAVA----R-----AVAEMRILAEYCLPLVRVGGLFVAAKGHDP 183 (243)
Q Consensus 123 -~~---~--~v~~~~~d~~~~~~~~~---~~-~~fD~I~~----~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 183 (243)
.. . +++|.+.|+..+..... +. ...|+|.. | ....--.++..+-..++||-.|++..++..
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS 246 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS 246 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence 01 1 48899999988754210 00 13455543 1 233457788899999999999999886554
Q ss_pred HH
Q 026122 184 QE 185 (243)
Q Consensus 184 ~~ 185 (243)
-.
T Consensus 247 YS 248 (315)
T PF11312_consen 247 YS 248 (315)
T ss_pred ch
Confidence 33
No 394
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=87.31 E-value=8.8 Score=34.73 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=22.5
Q ss_pred CCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHH
Q 026122 85 GAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEH 117 (243)
Q Consensus 85 G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~ 117 (243)
|.|.+|+.+|... .+.+|+++|++++.++.+++
T Consensus 7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 4555554454332 25789999999998887765
No 395
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=87.26 E-value=5.7 Score=34.94 Aligned_cols=97 Identities=18% Similarity=0.109 Sum_probs=53.9
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCEE-EEEcccc----ccccCCcCCCCc
Q 026122 75 SNLKLVDVGTG-AGLPGLVLAIACPDW-KVTLLESMNKRCVFLEHAVSLTQLLNVQ-IVRGRAE----TLGKDVSFREQY 147 (243)
Q Consensus 75 ~~~~VLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~-~~~~d~~----~~~~~~~~~~~f 147 (243)
++.+||=.|+| .|..++.+|+.. +. +|++++.+++..+.+ +++|...+- ....+.. .+... .....+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~~~~i~~~-~~~~~~ 250 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELA----REFGADATIDIDELPDPQRRAIVRDI-TGGRGA 250 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHH----HHcCCCeEEcCcccccHHHHHHHHHH-hCCCCC
Confidence 47788888764 233344555554 46 899999988755544 345553211 1111110 11100 001469
Q ss_pred eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
|+|+-.... ...+..+.+.++++|+++...
T Consensus 251 d~vid~~g~--~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 251 DVVIEASGH--PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred cEEEECCCC--hHHHHHHHHHhccCCEEEEEc
Confidence 999964322 234566778899999987654
No 396
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=86.95 E-value=3.9 Score=37.30 Aligned_cols=87 Identities=11% Similarity=0.029 Sum_probs=54.2
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122 75 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 75 ~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
++++|+=+|||+ |......++.. +++|+.+|.++...+.|+ ..|.. .. +..+.. ..+|+|+..
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~----~~G~~---~~--~~~e~v------~~aDVVI~a 264 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAA----MEGYE---VM--TMEEAV------KEGDIFVTT 264 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHH----hcCCE---Ec--cHHHHH------cCCCEEEEC
Confidence 488999999995 44444444444 569999999987655543 34542 22 122211 357999874
Q ss_pred CcccHHHHHHH-HccCcccCeEEEEEe
Q 026122 154 AVAEMRILAEY-CLPLVRVGGLFVAAK 179 (243)
Q Consensus 154 ~~~~~~~~l~~-~~~~LkpgG~l~~~~ 179 (243)
.- . ..++.. ..+.+|+||+++..-
T Consensus 265 tG-~-~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 265 TG-N-KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CC-C-HHHHHHHHHhcCCCCcEEEEeC
Confidence 32 2 234443 478999999976654
No 397
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=86.89 E-value=4.5 Score=36.19 Aligned_cols=93 Identities=17% Similarity=0.182 Sum_probs=52.8
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEE-ccccccccCCcCCCCceEEEE
Q 026122 75 SNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR-GRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 75 ~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~fD~I~~ 152 (243)
++.+|+=.|+| .|..++.+|+.. +.+|+++|.+++.. .+.++.+|.+. ++. .+...+... .+.+|+|+-
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~---~~~a~~lGa~~--~i~~~~~~~v~~~---~~~~D~vid 248 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKE---REAIDRLGADS--FLVTTDSQKMKEA---VGTMDFIID 248 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHh---HHHHHhCCCcE--EEcCcCHHHHHHh---hCCCcEEEE
Confidence 47888888875 344455566665 56899999876421 22334566532 221 111111111 135899986
Q ss_pred cCcccHHHHHHHHccCcccCeEEEEE
Q 026122 153 RAVAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 153 ~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
..-. ...+..+.+.+++||+++..
T Consensus 249 ~~G~--~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 249 TVSA--EHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred CCCc--HHHHHHHHHhhcCCCEEEEE
Confidence 4321 23456667789999998764
No 398
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.58 E-value=3.3 Score=35.95 Aligned_cols=75 Identities=15% Similarity=0.049 Sum_probs=54.0
Q ss_pred CCeEEEEcCCCCh---HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-------CcCCC
Q 026122 76 NLKLVDVGTGAGL---PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFRE 145 (243)
Q Consensus 76 ~~~VLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~~ 145 (243)
+..||=-|.|+|. +++.+|++ ++++...|++++..+...+.+++.| .+....+|+.+...- ...-+
T Consensus 38 g~~vLITGgg~GlGr~ialefa~r--g~~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKR--GAKLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEVG 113 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHh--CCeEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 8899999999996 33444433 5789999999998887777777776 578888887663211 00125
Q ss_pred CceEEEEcC
Q 026122 146 QYDVAVARA 154 (243)
Q Consensus 146 ~fD~I~~~~ 154 (243)
..|+++.|+
T Consensus 114 ~V~ILVNNA 122 (300)
T KOG1201|consen 114 DVDILVNNA 122 (300)
T ss_pred CceEEEecc
Confidence 789999875
No 399
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=86.50 E-value=1.5 Score=39.30 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=50.9
Q ss_pred CCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
+.+|+=+|+| .|..++..+... +++|+.+|.+++..+.+.. ..+. .+.....+..++... -..+|+|+...
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~---~~g~-~v~~~~~~~~~l~~~---l~~aDvVI~a~ 238 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDA---EFGG-RIHTRYSNAYEIEDA---VKRADLLIGAV 238 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHH---hcCc-eeEeccCCHHHHHHH---HccCCEEEEcc
Confidence 5679999887 445555555554 5689999999865443322 2222 122211222222111 14689999753
Q ss_pred -c--c-cHHHHHHHHccCcccCeEEEEE
Q 026122 155 -V--A-EMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 155 -~--~-~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
+ . .+.-+-+...+.++||+.++-.
T Consensus 239 ~~~g~~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 239 LIPGAKAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred ccCCCCCCcCcCHHHHhcCCCCCEEEEE
Confidence 1 1 1111224555667888876643
No 400
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=86.47 E-value=3.6 Score=37.17 Aligned_cols=104 Identities=13% Similarity=0.064 Sum_probs=57.9
Q ss_pred CCCCCeEEEEcC-C-CChHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHc----CCCCEEEEEc----cccccccC
Q 026122 73 CNSNLKLVDVGT-G-AGLPGLVLAIACP--DWKVTLLESMNKRCVFLEHAVSLT----QLLNVQIVRG----RAETLGKD 140 (243)
Q Consensus 73 ~~~~~~VLDiGc-G-~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~~~~~~----~~~~v~~~~~----d~~~~~~~ 140 (243)
++++.+|+=+|+ | .|..++.+|+... ..+|+++|.+++.++.+++..... |.. ..++.. +..+....
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~-~~~i~~~~~~~~~~~v~~ 251 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE-LLYVNPATIDDLHATLME 251 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce-EEEECCCccccHHHHHHH
Confidence 355788888873 4 5666666776642 248999999999888776642110 221 122221 11110000
Q ss_pred CcCCCCceEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 141 VSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 141 ~~~~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
......+|+|+..... ...+..+.+.++++|.+++..
T Consensus 252 ~t~g~g~D~vid~~g~--~~~~~~a~~~l~~~G~~v~~~ 288 (410)
T cd08238 252 LTGGQGFDDVFVFVPV--PELVEEADTLLAPDGCLNFFA 288 (410)
T ss_pred HhCCCCCCEEEEcCCC--HHHHHHHHHHhccCCeEEEEE
Confidence 0001369988864311 345566778889888766543
No 401
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=86.31 E-value=4.5 Score=35.24 Aligned_cols=98 Identities=19% Similarity=0.101 Sum_probs=53.7
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccc-cccCCcCCCCceE
Q 026122 74 NSNLKLVDVGTG-AGLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAET-LGKDVSFREQYDV 149 (243)
Q Consensus 74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~~~~~~~~~fD~ 149 (243)
.++.+|+-.|+| .|..++.+|+.. +.+ |++++.+++..+.++ .++... +.....+..+ +... .....+|+
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~-G~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~l~~~-~~~~~~d~ 233 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKAS-GAYPVIVSDPNEYRLELAK----KMGATYVVNPFKEDVVKEVADL-TDGEGVDV 233 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHH----HhCCcEEEcccccCHHHHHHHh-cCCCCCCE
Confidence 347777777664 344455566665 455 899988876554443 344421 1111111111 1000 00146999
Q ss_pred EEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 150 AVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
|+..... ...+..+.+.|+++|+++...
T Consensus 234 vld~~g~--~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 234 FLEMSGA--PKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred EEECCCC--HHHHHHHHHhhcCCCEEEEEc
Confidence 9975322 345667788899999977653
No 402
>PRK06940 short chain dehydrogenase; Provisional
Probab=86.29 E-value=3.7 Score=34.84 Aligned_cols=75 Identities=15% Similarity=0.023 Sum_probs=45.9
Q ss_pred CeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC------cCCCCceE
Q 026122 77 LKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV------SFREQYDV 149 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~~~fD~ 149 (243)
+.+|=.|+ |.++..+++.+ .+.+|+++|.++..++.+.+..+..+. ++.++.+|+.+..... ...+..|+
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 45665665 35776777654 467999999988766554444443332 4777888876632100 00146899
Q ss_pred EEEcC
Q 026122 150 AVARA 154 (243)
Q Consensus 150 I~~~~ 154 (243)
++.++
T Consensus 80 li~nA 84 (275)
T PRK06940 80 LVHTA 84 (275)
T ss_pred EEECC
Confidence 99865
No 403
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.26 E-value=9.7 Score=32.99 Aligned_cols=91 Identities=12% Similarity=0.090 Sum_probs=51.2
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCC-----------CCEEEEEccccccccCCcCC
Q 026122 77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL-TQL-----------LNVQIVRGRAETLGKDVSFR 144 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~-----------~~v~~~~~d~~~~~~~~~~~ 144 (243)
.+|.=||+|.=..++.......+.+|+++|.+++.++.+++...+ .+. .++++ ..|..+. -
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~------~ 77 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA------V 77 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH------h
Confidence 467778887533333333333467999999999988777664321 111 01121 1222221 1
Q ss_pred CCceEEEEcCccc---HHHHHHHHccCcccCeE
Q 026122 145 EQYDVAVARAVAE---MRILAEYCLPLVRVGGL 174 (243)
Q Consensus 145 ~~fD~I~~~~~~~---~~~~l~~~~~~LkpgG~ 174 (243)
...|+|+.....+ ...++..+...++++-.
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~i 110 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTI 110 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcE
Confidence 4579998754333 46677777776666544
No 404
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.25 E-value=8.5 Score=32.88 Aligned_cols=90 Identities=11% Similarity=0.135 Sum_probs=52.5
Q ss_pred eEEEEcCCCChHHHHHHH--HCCCCEEEEEeCCHHHHHHHHHHH-------HHcC-CC---------CEEEEEccccccc
Q 026122 78 KLVDVGTGAGLPGLVLAI--ACPDWKVTLLESMNKRCVFLEHAV-------SLTQ-LL---------NVQIVRGRAETLG 138 (243)
Q Consensus 78 ~VLDiGcG~G~~~~~la~--~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~-~~---------~v~~~~~d~~~~~ 138 (243)
+|.=||+| .++..+|. ...+.+|+++|++++.++.+++.+ .+.+ +. ++++ ..|...+
T Consensus 5 kI~VIG~G--~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~- 80 (282)
T PRK05808 5 KIGVIGAG--TMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDDL- 80 (282)
T ss_pred EEEEEccC--HHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHHh-
Confidence 56667776 33333332 223579999999999887554322 2222 11 2221 2233221
Q ss_pred cCCcCCCCceEEEEcCccc---HHHHHHHHccCcccCeEEEE
Q 026122 139 KDVSFREQYDVAVARAVAE---MRILAEYCLPLVRVGGLFVA 177 (243)
Q Consensus 139 ~~~~~~~~fD~I~~~~~~~---~~~~l~~~~~~LkpgG~l~~ 177 (243)
...|+|+.....+ ...+++.+.+.++|+..+..
T Consensus 81 ------~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s 116 (282)
T PRK05808 81 ------KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILAT 116 (282)
T ss_pred ------ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 4589999765433 24888888899988876533
No 405
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=86.14 E-value=4.5 Score=35.27 Aligned_cols=99 Identities=16% Similarity=0.031 Sum_probs=53.7
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEccccccccCCcCCCCceEEE
Q 026122 74 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 74 ~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
.++.+||-.|+|. |..++.+|+..+..+|++++.+++..+.++ .++...+ .....+...+... ...+.+|+|+
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~-~~~~~vd~vl 236 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAK----KMGADVVINPREEDVVEVKSV-TDGTGVDVVL 236 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH----HhCcceeeCcccccHHHHHHH-cCCCCCCEEE
Confidence 3477787777653 445566676654337889988776555443 3444211 1111111111000 0114699999
Q ss_pred EcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 152 ARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
..... ...+..+.+.|+++|.++...
T Consensus 237 d~~g~--~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 237 EMSGN--PKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred ECCCC--HHHHHHHHHHhccCCEEEEEc
Confidence 75322 234556677899999987653
No 406
>PRK07102 short chain dehydrogenase; Provisional
Probab=86.07 E-value=4.8 Score=33.11 Aligned_cols=76 Identities=12% Similarity=0.011 Sum_probs=47.2
Q ss_pred CeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC----cCCCCceEE
Q 026122 77 LKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV----SFREQYDVA 150 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~----~~~~~fD~I 150 (243)
++|+=.|+ +|.++..+++.. .+.+|++++.++...+...+.....+-.++.++.+|+.+..... .....+|.+
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 36787785 455666666543 36799999999876654444443333346889999987743210 011357999
Q ss_pred EEc
Q 026122 151 VAR 153 (243)
Q Consensus 151 ~~~ 153 (243)
+.+
T Consensus 81 v~~ 83 (243)
T PRK07102 81 LIA 83 (243)
T ss_pred EEC
Confidence 975
No 407
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=86.04 E-value=7.5 Score=33.43 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=52.3
Q ss_pred CeEEEEcCCCChHHHHHH--HHCCCCEEEEEeCCHHHHHHHHHHHHHc----------CC----------CCEEEEEccc
Q 026122 77 LKLVDVGTGAGLPGLVLA--IACPDWKVTLLESMNKRCVFLEHAVSLT----------QL----------LNVQIVRGRA 134 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la--~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------~~----------~~v~~~~~d~ 134 (243)
.+|.=||+|+ ++..+| ....+.+|+.+|.+++.++.+++.+++. +. .++.+ ..+.
T Consensus 4 ~~I~ViGaG~--mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~ 80 (291)
T PRK06035 4 KVIGVVGSGV--MGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSY 80 (291)
T ss_pred cEEEEECccH--HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCH
Confidence 3677778873 332222 2234679999999999988765543321 11 01111 1122
Q ss_pred cccccCCcCCCCceEEEEcCccc---HHHHHHHHccCcccCeEEE
Q 026122 135 ETLGKDVSFREQYDVAVARAVAE---MRILAEYCLPLVRVGGLFV 176 (243)
Q Consensus 135 ~~~~~~~~~~~~fD~I~~~~~~~---~~~~l~~~~~~LkpgG~l~ 176 (243)
..+ ...|+|+.....+ ...+++++.+.++++..++
T Consensus 81 ~~~-------~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 81 ESL-------SDADFIVEAVPEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred HHh-------CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 111 4579998765443 4677888888888876544
No 408
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=85.96 E-value=6.1 Score=34.95 Aligned_cols=97 Identities=11% Similarity=-0.004 Sum_probs=54.4
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc-----ccc-cccCCcCCC
Q 026122 73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-----AET-LGKDVSFRE 145 (243)
Q Consensus 73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-----~~~-~~~~~~~~~ 145 (243)
+.++.+||=.|+| .|..++.+|+..+..+|+++|.+++..+.+ +++|... ++..+ ..+ +... ..+
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~----~~~Ga~~--~i~~~~~~~~~~~~v~~~--~~~ 256 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQA----KKFGVTE--FVNPKDHDKPVQEVIAEM--TGG 256 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----HHcCCce--EEcccccchhHHHHHHHH--hCC
Confidence 3558899888864 233345556665433899999998866655 3455432 22111 111 1100 013
Q ss_pred CceEEEEcCcccHHHHHHHHccCcccC-eEEEEEe
Q 026122 146 QYDVAVARAVAEMRILAEYCLPLVRVG-GLFVAAK 179 (243)
Q Consensus 146 ~fD~I~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 179 (243)
.+|+++-.... ...+..+.+.+++| |+++...
T Consensus 257 ~~d~vid~~G~--~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 257 GVDYSFECTGN--IDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred CCCEEEECCCC--hHHHHHHHHHhhcCCCEEEEEC
Confidence 68988864221 33445566778896 8877654
No 409
>PRK07904 short chain dehydrogenase; Provisional
Probab=85.93 E-value=5.4 Score=33.37 Aligned_cols=78 Identities=14% Similarity=0.072 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHC---CCCEEEEEeCCHHH-HHHHHHHHHHcCCCCEEEEEcccccccc-----CC-cCC
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIAC---PDWKVTLLESMNKR-CVFLEHAVSLTQLLNVQIVRGRAETLGK-----DV-SFR 144 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~---~~~~v~~vD~s~~~-~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~-~~~ 144 (243)
.+.+||=.|++.| +|..+++.+ ++.+|+.++.+++. ++.+.+.++..+..+++++.+|+.+... .. ...
T Consensus 7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence 3678999999655 555666542 34799999988764 5544444555444468889898865331 00 001
Q ss_pred CCceEEEEc
Q 026122 145 EQYDVAVAR 153 (243)
Q Consensus 145 ~~fD~I~~~ 153 (243)
+..|+++.+
T Consensus 86 g~id~li~~ 94 (253)
T PRK07904 86 GDVDVAIVA 94 (253)
T ss_pred CCCCEEEEe
Confidence 468988865
No 410
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=85.89 E-value=6.6 Score=34.01 Aligned_cols=105 Identities=17% Similarity=0.237 Sum_probs=62.7
Q ss_pred CCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC--cccHHH
Q 026122 85 GAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--VAEMRI 160 (243)
Q Consensus 85 G~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~--~~~~~~ 160 (243)
|.|..+..+|... .+..|+..|.+++.. .+.....|. +......+.. ...|+|++.- ......
T Consensus 7 GLG~MG~pmA~~L~~aG~~v~v~~r~~~ka---~~~~~~~Ga---~~a~s~~eaa-------~~aDvVitmv~~~~~V~~ 73 (286)
T COG2084 7 GLGIMGSPMAANLLKAGHEVTVYNRTPEKA---AELLAAAGA---TVAASPAEAA-------AEADVVITMLPDDAAVRA 73 (286)
T ss_pred cCchhhHHHHHHHHHCCCEEEEEeCChhhh---hHHHHHcCC---cccCCHHHHH-------HhCCEEEEecCCHHHHHH
Confidence 5566676777643 468999999998752 233333343 2222221111 4689998742 234455
Q ss_pred HH---HHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeE
Q 026122 161 LA---EYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ 203 (243)
Q Consensus 161 ~l---~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 203 (243)
++ .-+...++||..++- .+.......+++.+.++..|+..++
T Consensus 74 V~~g~~g~~~~~~~G~i~ID-mSTisp~~a~~~a~~~~~~G~~~lD 118 (286)
T COG2084 74 VLFGENGLLEGLKPGAIVID-MSTISPETARELAAALAAKGLEFLD 118 (286)
T ss_pred HHhCccchhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHhcCCcEEe
Confidence 55 345667778877554 4445556667777888899986654
No 411
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=85.79 E-value=6.2 Score=37.82 Aligned_cols=94 Identities=15% Similarity=0.032 Sum_probs=55.3
Q ss_pred CeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-CCCCceEEEEc
Q 026122 77 LKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-FREQYDVAVAR 153 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~I~~~ 153 (243)
.+|+=+| .|..+..+++.. .+.+++.+|.|++.++.+++ . ...++.+|..+...... .-++.|.+++.
T Consensus 401 ~~vII~G--~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~---g~~v~~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 401 PQVIIVG--FGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y---GYKVYYGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred CCEEEec--CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C---CCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence 4565555 556666666532 45799999999998776654 2 35789999887532210 01468888874
Q ss_pred Cccc-HHHHHHHHccCcccCeEEEEEe
Q 026122 154 AVAE-MRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 154 ~~~~-~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
...+ -...+-...+.+.|...++...
T Consensus 472 ~~d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 472 CNEPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred eCCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 3222 1212222344466777766543
No 412
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=85.46 E-value=3.6 Score=36.10 Aligned_cols=93 Identities=18% Similarity=0.248 Sum_probs=63.0
Q ss_pred CCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
+.+|.=||-| .|..+..+|.- -++.|+-+|+|.+.+...... .+ .+++.+..+...+.... .+.|++|..-
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~rl~~ldd~---f~-~rv~~~~st~~~iee~v---~~aDlvIgaV 239 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNIDRLRQLDDL---FG-GRVHTLYSTPSNIEEAV---KKADLVIGAV 239 (371)
T ss_pred CccEEEECCccccchHHHHHhc-cCCeeEEEecCHHHHhhhhHh---hC-ceeEEEEcCHHHHHHHh---hhccEEEEEE
Confidence 5677888888 46666555544 368999999998765544332 22 24777777776665432 5799999742
Q ss_pred ----cccHHHHHHHHccCcccCeEEE
Q 026122 155 ----VAEMRILAEYCLPLVRVGGLFV 176 (243)
Q Consensus 155 ----~~~~~~~l~~~~~~LkpgG~l~ 176 (243)
-..+.-+.+++...+|||+.++
T Consensus 240 LIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 240 LIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred EecCCCCceehhHHHHHhcCCCcEEE
Confidence 2345666677788999999877
No 413
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.37 E-value=8.4 Score=33.06 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=56.0
Q ss_pred eEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHc-------C-C---------CCEEEEEccccccc
Q 026122 78 KLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLT-------Q-L---------LNVQIVRGRAETLG 138 (243)
Q Consensus 78 ~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~-------~-~---------~~v~~~~~d~~~~~ 138 (243)
+|.=||+| .++..+|.. ..+.+|+.+|.+++.++.+.+..... + + .++++ ..+..+..
T Consensus 3 ~V~VIG~G--~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~~ 79 (288)
T PRK09260 3 KLVVVGAG--VMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAAV 79 (288)
T ss_pred EEEEECcc--HHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHhh
Confidence 56667775 344334332 23679999999999988776543221 1 1 01221 22332211
Q ss_pred cCCcCCCCceEEEEcCccc---HHHHHHHHccCcccCeEEEEEeCCCcHHHH
Q 026122 139 KDVSFREQYDVAVARAVAE---MRILAEYCLPLVRVGGLFVAAKGHDPQEEV 187 (243)
Q Consensus 139 ~~~~~~~~fD~I~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 187 (243)
...|+|+.....+ ...++..+.+.++++..+....+.-...++
T Consensus 80 ------~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l 125 (288)
T PRK09260 80 ------ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEI 125 (288)
T ss_pred ------cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence 4579999654333 346677777888887665554444333333
No 414
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=85.21 E-value=7.8 Score=34.24 Aligned_cols=96 Identities=20% Similarity=0.207 Sum_probs=53.2
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122 74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
.++.+|+=.|+| .|..++.+|+.. +.+|++++.+++..+.+ .+.+|... .+...+...+... ...+|+++-
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~---~~~~Ga~~-~i~~~~~~~~~~~---~~~~D~vid 250 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEA---LEHLGADD-YLVSSDAAEMQEA---ADSLDYIID 250 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHH---HHhcCCcE-EecCCChHHHHHh---cCCCcEEEE
Confidence 347788877764 344445566665 56889998887643332 33456532 1111111111111 135898886
Q ss_pred cCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 153 RAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
..-. ...++.+.+.++++|+++..-
T Consensus 251 ~~g~--~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 251 TVPV--FHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred CCCc--hHHHHHHHHHhccCCEEEEEC
Confidence 4321 234556667899999977643
No 415
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=85.18 E-value=11 Score=32.19 Aligned_cols=93 Identities=16% Similarity=0.171 Sum_probs=51.8
Q ss_pred eEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc----ccccccCCcCCCCceEEE
Q 026122 78 KLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR----AETLGKDVSFREQYDVAV 151 (243)
Q Consensus 78 ~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d----~~~~~~~~~~~~~fD~I~ 151 (243)
+|+=+|+|.- |..+|.. ..+.+|+.++.+++.++..++ .++. +. .++ .......... ..+|+|+
T Consensus 2 ~I~IiG~G~~--G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~-~~--~~~~~~~~~~~~~~~~~-~~~d~vi 71 (304)
T PRK06522 2 KIAILGAGAI--GGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLR-LE--DGEITVPVLAADDPAEL-GPQDLVI 71 (304)
T ss_pred EEEEECCCHH--HHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCc-cc--CCceeecccCCCChhHc-CCCCEEE
Confidence 4667787643 3333332 235799999998765544432 2331 10 111 0001100011 5689988
Q ss_pred EcC-cccHHHHHHHHccCcccCeEEEEEeC
Q 026122 152 ARA-VAEMRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 152 ~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
... ......+++.+...+.++..++....
T Consensus 72 la~k~~~~~~~~~~l~~~l~~~~~iv~~~n 101 (304)
T PRK06522 72 LAVKAYQLPAALPSLAPLLGPDTPVLFLQN 101 (304)
T ss_pred EecccccHHHHHHHHhhhcCCCCEEEEecC
Confidence 754 33578888888888888777665553
No 416
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=84.96 E-value=5.4 Score=34.39 Aligned_cols=90 Identities=11% Similarity=0.084 Sum_probs=50.8
Q ss_pred CCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122 76 NLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 76 ~~~VLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
..+|+=+|.| -|.++..+........|++.|.+...++.+ ..+|+.+ + ...+..... ....|+|+..
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a----~~lgv~d-~-~~~~~~~~~-----~~~aD~Viva 71 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA----LELGVID-E-LTVAGLAEA-----AAEADLVIVA 71 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH----hhcCccc-c-cccchhhhh-----cccCCEEEEe
Confidence 3577778866 233344444333445678888887533332 2344321 1 111110111 1458988864
Q ss_pred -CcccHHHHHHHHccCcccCeEEE
Q 026122 154 -AVAEMRILAEYCLPLVRVGGLFV 176 (243)
Q Consensus 154 -~~~~~~~~l~~~~~~LkpgG~l~ 176 (243)
.+.....+++++.+.|++|..+.
T Consensus 72 vPi~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 72 VPIEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred ccHHHHHHHHHHhcccCCCCCEEE
Confidence 35667889999999999987644
No 417
>PRK07326 short chain dehydrogenase; Provisional
Probab=84.82 E-value=5.5 Score=32.48 Aligned_cols=76 Identities=17% Similarity=0.043 Sum_probs=47.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ 146 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~ 146 (243)
+.+||=+|+ +|.+|..+++.. .+.+|++++.++.......+..... ..+.++.+|+.+..... ...+.
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEADVQRAVDAIVAAFGG 82 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 578898885 666666666543 3679999999886555444433322 34788888876532100 00136
Q ss_pred ceEEEEcC
Q 026122 147 YDVAVARA 154 (243)
Q Consensus 147 fD~I~~~~ 154 (243)
.|.|+.++
T Consensus 83 ~d~vi~~a 90 (237)
T PRK07326 83 LDVLIANA 90 (237)
T ss_pred CCEEEECC
Confidence 89888653
No 418
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=84.75 E-value=3.6 Score=32.01 Aligned_cols=94 Identities=18% Similarity=0.203 Sum_probs=57.5
Q ss_pred EEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC------CEEEEEccccccccCCcCCCCceEEE
Q 026122 79 LVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-LL------NVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 79 VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~------~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
|.=+|+|++..++.......+.+|+....+++.++..++.-.... +. ++.+ ..|+++.. ...|+|+
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~------~~ad~Ii 74 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL------EDADIII 74 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH------TT-SEEE
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh------CcccEEE
Confidence 455777777655444444456799999999987776665433111 11 3432 44554432 4579888
Q ss_pred EcC-cccHHHHHHHHccCcccCeEEEEEe
Q 026122 152 ARA-VAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 152 ~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
..- ....+.+++.+...++++-.++...
T Consensus 75 iavPs~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 75 IAVPSQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp E-S-GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred ecccHHHHHHHHHHHhhccCCCCEEEEec
Confidence 754 3357899999999998876655433
No 419
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=84.66 E-value=4.1 Score=36.00 Aligned_cols=97 Identities=18% Similarity=0.140 Sum_probs=54.3
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc----cccCCcCCCCce
Q 026122 74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----LGKDVSFREQYD 148 (243)
Q Consensus 74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~~~~fD 148 (243)
.++.+||=.|+| .|..++.+|+..+...|++++.+++..+.++ ..+.. .++..+-.+ +... .....+|
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~----~~g~~--~v~~~~~~~~~~~l~~~-~~~~~~d 258 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAK----ELGAT--HTVNAAKEDAVAAIREI-TGGRGVD 258 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HhCCc--eEecCCcccHHHHHHHH-hCCCCCC
Confidence 346777766654 3334455566654334999999887655543 34442 222221111 1100 0014599
Q ss_pred EEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 149 VAVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+|+...... ..++.+.+.|+++|.++...
T Consensus 259 ~vld~vg~~--~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 259 VVVEALGKP--ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EEEEeCCCH--HHHHHHHHHHhcCCEEEEEc
Confidence 999643221 35677788999999987653
No 420
>PRK08324 short chain dehydrogenase; Validated
Probab=84.62 E-value=11 Score=36.65 Aligned_cols=102 Identities=13% Similarity=-0.023 Sum_probs=60.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ 146 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~ 146 (243)
+++||=.|++. .+|..+++.. .+.+|+++|.++...+.+....... .++.++.+|+.+..... ...+.
T Consensus 422 gk~vLVTGasg-gIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~ 498 (681)
T PRK08324 422 GKVALVTGAAG-GIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFGG 498 (681)
T ss_pred CCEEEEecCCC-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 57888888754 4555555432 3679999999987665544433222 35778888876532100 00146
Q ss_pred ceEEEEcCcc-----------------------cHHHHHHHHccCccc---CeEEEEEeC
Q 026122 147 YDVAVARAVA-----------------------EMRILAEYCLPLVRV---GGLFVAAKG 180 (243)
Q Consensus 147 fD~I~~~~~~-----------------------~~~~~l~~~~~~Lkp---gG~l~~~~~ 180 (243)
.|+|+.++.. ....+++.+.+.+++ +|.+++..+
T Consensus 499 iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 499 VDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 8999986520 023445566666665 678776653
No 421
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=84.51 E-value=8.6 Score=33.26 Aligned_cols=111 Identities=13% Similarity=0.079 Sum_probs=61.3
Q ss_pred eEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 78 KLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 78 ~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
+|-=||+|. .+..++.. ..+.+|++.|.+++.++.+++ .+.. . ..+..++... ....|+|+..-
T Consensus 2 ~Ig~IGlG~--mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~----~g~~---~-~~s~~~~~~~---~~~~dvIi~~vp 68 (298)
T TIGR00872 2 QLGLIGLGR--MGANIVRRLAKRGHDCVGYDHDQDAVKAMKE----DRTT---G-VANLRELSQR---LSAPRVVWVMVP 68 (298)
T ss_pred EEEEEcchH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cCCc---c-cCCHHHHHhh---cCCCCEEEEEcC
Confidence 345567654 44444432 346799999999976554432 2321 1 1233332211 03469888743
Q ss_pred cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeee
Q 026122 155 VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLL 202 (243)
Q Consensus 155 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~ 202 (243)
......+++.+...|++|-. ++..+........+..+.++..|...+
T Consensus 69 ~~~~~~v~~~l~~~l~~g~i-vid~st~~~~~t~~~~~~~~~~g~~~v 115 (298)
T TIGR00872 69 HGIVDAVLEELAPTLEKGDI-VIDGGNSYYKDSLRRYKLLKEKGIHLL 115 (298)
T ss_pred chHHHHHHHHHHhhCCCCCE-EEECCCCCcccHHHHHHHHHhcCCeEE
Confidence 22567778888888888744 444443333344445556667776543
No 422
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=84.45 E-value=6 Score=34.37 Aligned_cols=96 Identities=8% Similarity=0.037 Sum_probs=54.5
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-CcCCCCceEEE
Q 026122 74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-VSFREQYDVAV 151 (243)
Q Consensus 74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~fD~I~ 151 (243)
.++.+||=.||| .|..++.+|+.. +.+|+.++.+++..+.++ ++|.+. ++...-.++... ... ..+|+++
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~~----~~g~~~--~i~~~~~~~~~~~~~~-~~~d~vi 233 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKM-GFRTVAISRGSDKADLAR----KLGAHH--YIDTSKEDVAEALQEL-GGAKLIL 233 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHH----HcCCcE--EecCCCccHHHHHHhc-CCCCEEE
Confidence 347788888854 233344556554 568999999987655553 345422 222111111100 001 3489998
Q ss_pred EcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 152 ARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
..... ...+..+.+.|+++|.++...
T Consensus 234 ~~~g~--~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 234 ATAPN--AKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred ECCCc--hHHHHHHHHHcccCCEEEEEe
Confidence 64211 345666778899999977643
No 423
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.37 E-value=12 Score=32.16 Aligned_cols=103 Identities=11% Similarity=0.104 Sum_probs=58.6
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-------C-C---------CCEEEEEcccccccc
Q 026122 77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-------Q-L---------LNVQIVRGRAETLGK 139 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~-~---------~~v~~~~~d~~~~~~ 139 (243)
.+|-=||+|+=..++.......+.+|+.+|.+++.++.+++.+++. | + .+++ ...|.+.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~~-- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGDF-- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHHh--
Confidence 3777888874222233333345789999999999988766554321 1 1 1121 22333222
Q ss_pred CCcCCCCceEEEEcCccc---HHHHHHHHccCc-ccCeEEEEEeCCCcHHHH
Q 026122 140 DVSFREQYDVAVARAVAE---MRILAEYCLPLV-RVGGLFVAAKGHDPQEEV 187 (243)
Q Consensus 140 ~~~~~~~fD~I~~~~~~~---~~~~l~~~~~~L-kpgG~l~~~~~~~~~~~~ 187 (243)
...|+|+-....+ -..++..+.+.+ +|+..+.-.++.....++
T Consensus 83 -----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~l 129 (286)
T PRK07819 83 -----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKL 129 (286)
T ss_pred -----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence 4589999754333 356777777777 667554443343343433
No 424
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.24 E-value=4.1 Score=38.57 Aligned_cols=93 Identities=14% Similarity=0.026 Sum_probs=53.9
Q ss_pred CeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-CCCCceEEEEc
Q 026122 77 LKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-FREQYDVAVAR 153 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~I~~~ 153 (243)
.+|+=+||| ..+..+++.. .+.+|+.+|.+++.++.+++ . +...+.+|..+...... .-+++|.+++.
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~---g~~~i~GD~~~~~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R---GIRAVLGNAANEEIMQLAHLDCARWLLLT 488 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C---CCeEEEcCCCCHHHHHhcCccccCEEEEE
Confidence 456665555 5566666543 35789999999987666643 2 46799999887432110 01578977653
Q ss_pred CcccHH--HHHHHHccCcccCeEEEEEe
Q 026122 154 AVAEMR--ILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 154 ~~~~~~--~~l~~~~~~LkpgG~l~~~~ 179 (243)
...+.+ .+... .+...|+-.++...
T Consensus 489 ~~~~~~~~~iv~~-~~~~~~~~~iiar~ 515 (558)
T PRK10669 489 IPNGYEAGEIVAS-AREKRPDIEIIARA 515 (558)
T ss_pred cCChHHHHHHHHH-HHHHCCCCeEEEEE
Confidence 222211 23333 34446766666543
No 425
>PRK07454 short chain dehydrogenase; Provisional
Probab=84.06 E-value=8.7 Score=31.48 Aligned_cols=77 Identities=14% Similarity=0.072 Sum_probs=48.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-------CCCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FREQ 146 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-------~~~~ 146 (243)
.+++|=.|+ +|.++..+++.. .+.+|++++.+++..+...+..+..+ .++.++.+|+.+...... ..++
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 567888885 566666666543 46799999999876655444444333 257888898876431100 0135
Q ss_pred ceEEEEcC
Q 026122 147 YDVAVARA 154 (243)
Q Consensus 147 fD~I~~~~ 154 (243)
.|.++.++
T Consensus 84 id~lv~~a 91 (241)
T PRK07454 84 PDVLINNA 91 (241)
T ss_pred CCEEEECC
Confidence 79998754
No 426
>PRK09291 short chain dehydrogenase; Provisional
Probab=83.64 E-value=6 Score=32.72 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=48.3
Q ss_pred CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-cCCCCceEEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVA 152 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~fD~I~~ 152 (243)
+.+||=.|++.| ++..+++. ..+++|++++.++...+..+......+. ++.++.+|+.+..... ......|+|+.
T Consensus 2 ~~~vlVtGasg~-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 2 SKTILITGAGSG-FGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 357888887554 55555543 2468999999987766555554444443 4788888887642110 01137899998
Q ss_pred cC
Q 026122 153 RA 154 (243)
Q Consensus 153 ~~ 154 (243)
++
T Consensus 80 ~a 81 (257)
T PRK09291 80 NA 81 (257)
T ss_pred CC
Confidence 64
No 427
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=83.58 E-value=5.2 Score=34.61 Aligned_cols=94 Identities=13% Similarity=0.010 Sum_probs=50.5
Q ss_pred CCeEEEE--cCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc---cCCcCCCCceE
Q 026122 76 NLKLVDV--GTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG---KDVSFREQYDV 149 (243)
Q Consensus 76 ~~~VLDi--GcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~~~fD~ 149 (243)
+.+++=+ |+| .|..++.+|+.. +.+|++++.+++..+.+++ +|.+. ++..+-.++. ........+|+
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~-G~~vi~~~~~~~~~~~~~~----~g~~~--~i~~~~~~~~~~v~~~~~~~~~d~ 215 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKAD-GIKVINIVRRKEQVDLLKK----IGAEY--VLNSSDPDFLEDLKELIAKLNATI 215 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCcE--EEECCCccHHHHHHHHhCCCCCcE
Confidence 4455544 332 444455566664 6789999999876666543 55432 2222111110 00000135899
Q ss_pred EEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 150 AVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
++-.... .......+.++++|+++...
T Consensus 216 vid~~g~---~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 216 FFDAVGG---GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred EEECCCc---HHHHHHHHhhCCCCEEEEEE
Confidence 9864322 12234567789999987654
No 428
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=83.53 E-value=4.9 Score=35.46 Aligned_cols=98 Identities=13% Similarity=0.119 Sum_probs=56.8
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc----cccCCcCCCCc
Q 026122 73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----LGKDVSFREQY 147 (243)
Q Consensus 73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~~~~f 147 (243)
+.++.+||-.|+| .|..++.+++..+..+|++++.++...+.++ ..+.. .++..+-.+ +... .....+
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~----~~g~~--~vv~~~~~~~~~~l~~~-~~~~~v 252 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELAR----RFGAT--HTVNASEDDAVEAVRDL-TDGRGA 252 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH----HhCCe--EEeCCCCccHHHHHHHH-cCCCCC
Confidence 3457888888775 3555566776654335999999887655543 34442 222221111 1100 001469
Q ss_pred eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
|+++..... ...+..+.+.|+++|+++...
T Consensus 253 d~vld~~~~--~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 253 DYAFEAVGR--AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred CEEEEcCCC--hHHHHHHHHHhhcCCeEEEEe
Confidence 999864322 245667788899999987653
No 429
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=83.40 E-value=3.1 Score=31.42 Aligned_cols=87 Identities=16% Similarity=0.082 Sum_probs=42.6
Q ss_pred CCeEEEEcCCCCh-HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc-
Q 026122 76 NLKLVDVGTGAGL-PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR- 153 (243)
Q Consensus 76 ~~~VLDiGcG~G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~- 153 (243)
..+|+++|-|.=. .+..|+.. +..|+++|+++. ++. .| +.++..|+.+-... .-...|+|.|-
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~-------~a~-~g---~~~v~DDif~P~l~--iY~~a~lIYSiR 78 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR-------KAP-EG---VNFVVDDIFNPNLE--IYEGADLIYSIR 78 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S------------S---TTEE---SSS--HH--HHTTEEEEEEES
T ss_pred CCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc-------ccc-cC---cceeeecccCCCHH--HhcCCcEEEEeC
Confidence 4599999999755 44455544 589999999985 222 33 56888898874321 12468999984
Q ss_pred CcccHHHHHHHHccCcccCeEEEEEe
Q 026122 154 AVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 154 ~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
...++...+-.+.+.+ |.-+++..
T Consensus 79 PP~El~~~il~lA~~v--~adlii~p 102 (127)
T PF03686_consen 79 PPPELQPPILELAKKV--GADLIIRP 102 (127)
T ss_dssp --TTSHHHHHHHHHHH--T-EEEEE-
T ss_pred CChHHhHHHHHHHHHh--CCCEEEEC
Confidence 3334443333344333 44555543
No 430
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=83.04 E-value=17 Score=34.05 Aligned_cols=119 Identities=10% Similarity=0.051 Sum_probs=68.5
Q ss_pred eEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122 78 KLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 154 (243)
Q Consensus 78 ~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~- 154 (243)
+|==||. |..+..+|+. ..+.+|+..|.+++.++...+.....|..++ ....+..++.... ...|+|++.-
T Consensus 8 ~IG~IGL--G~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~-~~a~s~~e~v~~l---~~~dvIi~~v~ 81 (493)
T PLN02350 8 RIGLAGL--AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPL-YGFKDPEDFVLSI---QKPRSVIILVK 81 (493)
T ss_pred CEEEEee--HHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCccc-ccCCCHHHHHhcC---CCCCEEEEECC
Confidence 3444444 4555555543 2468999999998876654432211232111 1233455543211 3479888742
Q ss_pred -cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeE
Q 026122 155 -VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ 203 (243)
Q Consensus 155 -~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 203 (243)
....+.+++.+...|++|- +++-.+....+...+..+.++..|...+.
T Consensus 82 ~~~aV~~Vi~gl~~~l~~G~-iiID~sT~~~~~t~~~~~~l~~~Gi~fld 130 (493)
T PLN02350 82 AGAPVDQTIKALSEYMEPGD-CIIDGGNEWYENTERRIKEAAEKGLLYLG 130 (493)
T ss_pred CcHHHHHHHHHHHhhcCCCC-EEEECCCCCHHHHHHHHHHHHHcCCeEEe
Confidence 3345667777778888864 45555555556666667777888876554
No 431
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=82.98 E-value=11 Score=31.88 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=52.6
Q ss_pred CCCCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEE
Q 026122 73 CNSNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA 150 (243)
Q Consensus 73 ~~~~~~VLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I 150 (243)
+.++.+|+-.|+. .|...+.+|+.. +++|++++.+ ...+. ++..+... ++..+-.++.......+.+|+|
T Consensus 141 ~~~g~~vli~g~~g~~g~~~~~la~~~-g~~v~~~~~~-~~~~~----~~~~g~~~--~~~~~~~~~~~~~~~~~~~d~v 212 (319)
T cd08267 141 VKPGQRVLINGASGGVGTFAVQIAKAL-GAHVTGVCST-RNAEL----VRSLGADE--VIDYTTEDFVALTAGGEKYDVI 212 (319)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEeCH-HHHHH----HHHcCCCE--eecCCCCCcchhccCCCCCcEE
Confidence 3458899999973 455666677665 5799998854 43333 34455421 1111111110000112469999
Q ss_pred EEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 151 VARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+.............+. .++++|.++...
T Consensus 213 i~~~~~~~~~~~~~~~-~l~~~g~~i~~g 240 (319)
T cd08267 213 FDAVGNSPFSLYRASL-ALKPGGRYVSVG 240 (319)
T ss_pred EECCCchHHHHHHhhh-ccCCCCEEEEec
Confidence 9754322233333333 389999977653
No 432
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=82.92 E-value=7.8 Score=32.73 Aligned_cols=95 Identities=17% Similarity=0.121 Sum_probs=54.2
Q ss_pred CCCCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccc----ccCCcCCCC
Q 026122 73 CNSNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL----GKDVSFREQ 146 (243)
Q Consensus 73 ~~~~~~VLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~~ 146 (243)
+.++.+|+-.||. .|...+.+++.. +++|+.++.+++..+.++ ..+... ++..+-.++ ... .....
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~----~~g~~~--~~~~~~~~~~~~i~~~-~~~~~ 208 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKAL-GARVIAAASSEEKLALAR----ALGADH--VIDYRDPDLRERVKAL-TGGRG 208 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHh-CCEEEEEeCCHHHHHHHH----HcCCce--eeecCCccHHHHHHHH-cCCCC
Confidence 3457899999983 344444555553 678999999987666553 334422 121111111 000 00135
Q ss_pred ceEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122 147 YDVAVARAVAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 147 fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
+|+++..... ..+..+.+.++++|.++..
T Consensus 209 ~d~v~~~~g~---~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 209 VDVVYDPVGG---DVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred cEEEEECccH---HHHHHHHHhhccCCEEEEE
Confidence 8998865322 3445667788999987654
No 433
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=82.87 E-value=4.5 Score=35.00 Aligned_cols=78 Identities=9% Similarity=0.026 Sum_probs=46.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVA 152 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 152 (243)
+++||=.| |+|.+|..+++.. .+.+|+++..++.............+. .+++++.+|+.+.......-...|+|+.
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 67888888 5778877777643 467888887765433222221111122 3588899998875321111135798887
Q ss_pred cC
Q 026122 153 RA 154 (243)
Q Consensus 153 ~~ 154 (243)
.+
T Consensus 84 ~A 85 (325)
T PLN02989 84 TA 85 (325)
T ss_pred eC
Confidence 54
No 434
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=82.85 E-value=26 Score=32.57 Aligned_cols=120 Identities=14% Similarity=0.133 Sum_probs=66.9
Q ss_pred eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc--Cc
Q 026122 78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR--AV 155 (243)
Q Consensus 78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~--~~ 155 (243)
+|-=||.|.-.-++.......+.+|++.|.+++.++...+.....+. +++ ...++.++.... ...|+|+.. ..
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~-~i~-~~~s~~e~v~~l---~~~d~Iil~v~~~ 77 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNT-RVK-GYHTLEELVNSL---KKPRKVILLIKAG 77 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCC-cce-ecCCHHHHHhcC---CCCCEEEEEeCCh
Confidence 34556666433222222233467999999999887766554332232 122 233444443211 246866653 23
Q ss_pred ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeE
Q 026122 156 AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ 203 (243)
Q Consensus 156 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 203 (243)
...+.+++.+.+.|++|-. ++-.+......-....+.+...|...+.
T Consensus 78 ~~v~~vi~~l~~~L~~g~i-IID~gn~~~~dt~~r~~~l~~~Gi~fld 124 (470)
T PTZ00142 78 EAVDETIDNLLPLLEKGDI-IIDGGNEWYLNTERRIKRCEEKGILYLG 124 (470)
T ss_pred HHHHHHHHHHHhhCCCCCE-EEECCCCCHHHHHHHHHHHHHcCCeEEc
Confidence 3567788888888988755 4444444444444555667777875543
No 435
>PRK08703 short chain dehydrogenase; Provisional
Probab=82.76 E-value=6.9 Score=32.06 Aligned_cols=59 Identities=15% Similarity=0.022 Sum_probs=38.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAE 135 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~ 135 (243)
+++|+=.||+ |.+|..+++.+ .+.+|++++.++...+.....+...+-..+.++..|+.
T Consensus 6 ~k~vlItG~s-ggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~ 66 (239)
T PRK08703 6 DKTILVTGAS-QGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLM 66 (239)
T ss_pred CCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeec
Confidence 6789999964 55555666543 46899999999876665555544433223555666654
No 436
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=82.74 E-value=1.4 Score=41.77 Aligned_cols=93 Identities=13% Similarity=0.045 Sum_probs=57.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccc----ccCCc-CCCC
Q 026122 73 CNSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL----GKDVS-FREQ 146 (243)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~-~~~~ 146 (243)
+.++..|||+||.+|......++..| +.-|+|||+-+- ..+.++..++.||..- +.... ..-+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-----------kp~~~c~t~v~dIttd~cr~~l~k~l~t~~ 110 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-----------KPIPNCDTLVEDITTDECRSKLRKILKTWK 110 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-----------ccCCccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 35578999999999998766666665 568999998762 1223444444555431 10000 0135
Q ss_pred ceEEEEcCccc---------------HHHHHHHHccCcccCeEEE
Q 026122 147 YDVAVARAVAE---------------MRILAEYCLPLVRVGGLFV 176 (243)
Q Consensus 147 fD~I~~~~~~~---------------~~~~l~~~~~~LkpgG~l~ 176 (243)
.|+|+..+.++ -...++.+...|+.||.++
T Consensus 111 advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 111 ADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred CcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 69998853111 1344566778889999954
No 437
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=82.74 E-value=42 Score=31.40 Aligned_cols=104 Identities=13% Similarity=0.013 Sum_probs=64.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHC--C--CCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccccCCcCCCCce
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIAC--P--DWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVSFREQYD 148 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~--~--~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~fD 148 (243)
+++.|.|..||+|...+...... + ...++|-|....+..+++.+..-++.. ......+|...-+.. ....+||
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~-~~~~~~D 295 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEW-ENENGFE 295 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccc-cccccCC
Confidence 46799999999998765433321 1 256999999999999998887655542 233333433221110 0114689
Q ss_pred EEEEcC-----c-----c-------------------cHHHHHHHHccCcccCeEEEEEe
Q 026122 149 VAVARA-----V-----A-------------------EMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 149 ~I~~~~-----~-----~-------------------~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
.|+++. + + .=..++..+...|++||+..++.
T Consensus 296 ~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 296 VVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred EEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 888752 0 0 01345566778899999866554
No 438
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.66 E-value=8.9 Score=34.34 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=44.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEE---EeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTL---LESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK 139 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~---vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 139 (243)
+..++++|||-|.++.+++...+...++. +|........=+...+++.. .++=+..|++++..
T Consensus 183 ~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~~-vi~R~riDI~dLkL 248 (420)
T KOG2811|consen 183 SSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNSL-VIKRIRIDIEDLKL 248 (420)
T ss_pred cceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccCcc-hhheeEeeHHhcCc
Confidence 46899999999999999999888777766 88776555444443333322 25566678887654
No 439
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=82.66 E-value=8 Score=31.79 Aligned_cols=75 Identities=15% Similarity=0.040 Sum_probs=46.5
Q ss_pred eEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc-------cCCcCCCCce
Q 026122 78 KLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG-------KDVSFREQYD 148 (243)
Q Consensus 78 ~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~~~~fD 148 (243)
++|=.| |+|.++..+++.. .+.+|++++.++...+.+....+..+ .++.++.+|+.+.. .........|
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 80 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG-GSVIYLVADVTKEDEIADMIAAAAAEFGGLD 80 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 566666 4566676776543 46799999999876555544444333 25888888887643 1000014579
Q ss_pred EEEEcC
Q 026122 149 VAVARA 154 (243)
Q Consensus 149 ~I~~~~ 154 (243)
.|+.++
T Consensus 81 ~vi~~a 86 (255)
T TIGR01963 81 ILVNNA 86 (255)
T ss_pred EEEECC
Confidence 988754
No 440
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=82.53 E-value=6.5 Score=34.22 Aligned_cols=98 Identities=13% Similarity=0.139 Sum_probs=54.4
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEccccc-cccCCcCCCCceEEE
Q 026122 75 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAET-LGKDVSFREQYDVAV 151 (243)
Q Consensus 75 ~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~-~~~~~~~~~~fD~I~ 151 (243)
++.+|+-.|+|. |..++.+|+..+..+|++++.+++..+.++ .+|.+.+ .....+..+ +... .....+|+|+
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~----~lg~~~~~~~~~~~~~~~~~~~-~~~~~~d~v~ 237 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELAR----KMGATRAVNVAKEDLRDVMAEL-GMTEGFDVGL 237 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HhCCcEEecCccccHHHHHHHh-cCCCCCCEEE
Confidence 367777777653 445556676654337888988887655544 3444321 111111111 1000 0124689998
Q ss_pred EcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 152 ARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
..... ...+..+.+.|+++|.++...
T Consensus 238 d~~g~--~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 238 EMSGA--PSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred ECCCC--HHHHHHHHHHHhcCCEEEEEe
Confidence 73322 335566777899999988764
No 441
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=82.45 E-value=9.6 Score=31.52 Aligned_cols=77 Identities=10% Similarity=-0.069 Sum_probs=48.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-------CcCCCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFREQ 146 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~~~ 146 (243)
++++|=.|++. .++..+++.+ .+++|+.++.+++.++.....++..+. ++.++.+|+.+.... ....++
T Consensus 11 ~k~ilItGas~-~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 88 (256)
T PRK06124 11 GQVALVTGSAR-GLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEEAVAAAFARIDAEHGR 88 (256)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 77899888654 4555666543 468999999998766655555544443 477888887663210 000146
Q ss_pred ceEEEEcC
Q 026122 147 YDVAVARA 154 (243)
Q Consensus 147 fD~I~~~~ 154 (243)
.|.++.++
T Consensus 89 id~vi~~a 96 (256)
T PRK06124 89 LDILVNNV 96 (256)
T ss_pred CCEEEECC
Confidence 79898753
No 442
>PRK08339 short chain dehydrogenase; Provisional
Probab=82.41 E-value=10 Score=31.87 Aligned_cols=78 Identities=10% Similarity=0.027 Sum_probs=49.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc------CCCCc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS------FREQY 147 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~f 147 (243)
++++|=.|++.|. +..+++.+ .+++|+.++.+++.++.+.+..+...-.++.++.+|+.+...... ..+..
T Consensus 8 ~k~~lItGas~gI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i 86 (263)
T PRK08339 8 GKLAFTTASSKGI-GFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP 86 (263)
T ss_pred CCEEEEeCCCCcH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence 6788989988775 34444432 468999999998776655554443222357888888876421100 01468
Q ss_pred eEEEEcC
Q 026122 148 DVAVARA 154 (243)
Q Consensus 148 D~I~~~~ 154 (243)
|+++.++
T Consensus 87 D~lv~na 93 (263)
T PRK08339 87 DIFFFST 93 (263)
T ss_pred cEEEECC
Confidence 9888764
No 443
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=82.15 E-value=17 Score=33.38 Aligned_cols=39 Identities=28% Similarity=0.400 Sum_probs=27.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHH
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLE 116 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~ 116 (243)
..+|-=||. |.+|+.+|... .+.+|+++|++++.++..+
T Consensus 6 ~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 6 EVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELK 45 (425)
T ss_pred CCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 356666655 56666666543 2479999999999887765
No 444
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=81.94 E-value=8.3 Score=39.38 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=40.7
Q ss_pred CCeEEEEcCC-CChHHHHHHHHCCCCE-------------EEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC
Q 026122 76 NLKLVDVGTG-AGLPGLVLAIACPDWK-------------VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV 141 (243)
Q Consensus 76 ~~~VLDiGcG-~G~~~~~la~~~~~~~-------------v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 141 (243)
..+|+=|||| .|...+......++.+ |+..|++.+.. ++.++.. .+++.+..|+.+.....
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a---~~la~~~--~~~~~v~lDv~D~e~L~ 643 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDA---KETVEGI--ENAEAVQLDVSDSESLL 643 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHH---HHHHHhc--CCCceEEeecCCHHHHH
Confidence 5689999997 3554333333345544 88899997643 3333332 23445555544432111
Q ss_pred cCCCCceEEEEcC
Q 026122 142 SFREQYDVAVARA 154 (243)
Q Consensus 142 ~~~~~fD~I~~~~ 154 (243)
..-...|+|++-.
T Consensus 644 ~~v~~~DaVIsal 656 (1042)
T PLN02819 644 KYVSQVDVVISLL 656 (1042)
T ss_pred HhhcCCCEEEECC
Confidence 1013599999853
No 445
>PRK06949 short chain dehydrogenase; Provisional
Probab=81.85 E-value=10 Score=31.27 Aligned_cols=77 Identities=14% Similarity=0.023 Sum_probs=48.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ 146 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~ 146 (243)
+++||=.| |+|.++..+++.+ .+.+|++++.+++.++......+..+. ++.++.+|+.+..... ...++
T Consensus 9 ~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 86 (258)
T PRK06949 9 GKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTDYQSIKAAVAHAETEAGT 86 (258)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 67888888 5555666666543 467999999998876655554443332 4778888876532100 00135
Q ss_pred ceEEEEcC
Q 026122 147 YDVAVARA 154 (243)
Q Consensus 147 fD~I~~~~ 154 (243)
.|+++.++
T Consensus 87 ~d~li~~a 94 (258)
T PRK06949 87 IDILVNNS 94 (258)
T ss_pred CCEEEECC
Confidence 79988864
No 446
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=81.76 E-value=11 Score=32.71 Aligned_cols=96 Identities=13% Similarity=0.111 Sum_probs=53.4
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccc---cccccCCcCCCCceE
Q 026122 74 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA---ETLGKDVSFREQYDV 149 (243)
Q Consensus 74 ~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~~fD~ 149 (243)
.++.+||=.|+|+ |...+.+|+..++.+|++++.+++..+.+ +..+.+. ++..+- .++... .....+|+
T Consensus 166 ~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~----~~~g~~~--~~~~~~~~~~~i~~~-~~~~~~dv 238 (340)
T cd05284 166 DPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLA----ERLGADH--VLNASDDVVEEVREL-TGGRGADA 238 (340)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHH----HHhCCcE--EEcCCccHHHHHHHH-hCCCCCCE
Confidence 4478888888553 22233445554437899999988755544 3455421 221111 111100 00135999
Q ss_pred EEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122 150 AVARAVAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
|+..... ...++.+.+.|+++|+++..
T Consensus 239 vld~~g~--~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 239 VIDFVGS--DETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred EEEcCCC--HHHHHHHHHHhhcCCEEEEE
Confidence 9964322 34566777888999998754
No 447
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=81.63 E-value=8.5 Score=33.59 Aligned_cols=90 Identities=16% Similarity=0.078 Sum_probs=47.1
Q ss_pred CCeEEEEcCCCChHHHHHHH---HCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEE-ccccccccCCcCCCCceEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAI---ACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR-GRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~---~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~fD~I~ 151 (243)
+.+|+=+|+| ..+..+++ .....+|+.+|.+++.. ++.++.++. .... .+..+.. ..+|+|+
T Consensus 178 ~~~V~ViGaG--~iG~~~a~~L~~~g~~~V~v~~r~~~ra---~~la~~~g~---~~~~~~~~~~~l------~~aDvVi 243 (311)
T cd05213 178 GKKVLVIGAG--EMGELAAKHLAAKGVAEITIANRTYERA---EELAKELGG---NAVPLDELLELL------NEADVVI 243 (311)
T ss_pred CCEEEEECcH--HHHHHHHHHHHHcCCCEEEEEeCCHHHH---HHHHHHcCC---eEEeHHHHHHHH------hcCCEEE
Confidence 7899999885 44433333 22346899999997643 333444443 2221 1222211 4589999
Q ss_pred EcCc-ccHHHHHHHHccCcccCeEEEEEe
Q 026122 152 ARAV-AEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 152 ~~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+... ......++.+.+....+|.+++-.
T Consensus 244 ~at~~~~~~~~~~~~~~~~~~~~~~viDl 272 (311)
T cd05213 244 SATGAPHYAKIVERAMKKRSGKPRLIVDL 272 (311)
T ss_pred ECCCCCchHHHHHHHHhhCCCCCeEEEEe
Confidence 8543 233344444433332245655533
No 448
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.42 E-value=19 Score=31.77 Aligned_cols=92 Identities=15% Similarity=0.095 Sum_probs=53.4
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-------cCC------CCEEEEEccccccccCCcC
Q 026122 77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL-------TQL------LNVQIVRGRAETLGKDVSF 143 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~------~~v~~~~~d~~~~~~~~~~ 143 (243)
.+|-=||+|+=..++.......+.+|+..|.+++.++.++..++. .++ .++++. .++++.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~a------ 80 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEAC------ 80 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHH------
Confidence 577788887322222222223578999999999887765553321 221 112222 122221
Q ss_pred CCCceEEEEcCccc---HHHHHHHHccCcccCeEE
Q 026122 144 REQYDVAVARAVAE---MRILAEYCLPLVRVGGLF 175 (243)
Q Consensus 144 ~~~fD~I~~~~~~~---~~~~l~~~~~~LkpgG~l 175 (243)
-...|+|+-....+ -..+++.+.+.++|+..+
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIl 115 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAII 115 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEE
Confidence 14579999865443 357778888888888643
No 449
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=81.42 E-value=10 Score=31.41 Aligned_cols=77 Identities=13% Similarity=0.007 Sum_probs=49.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-------CcCCCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFREQ 146 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~~~ 146 (243)
+++||=.|+ +|.++..+++.. .+++|++++.++...+.....++..+. ++.++.+|+.+.... ....+.
T Consensus 10 ~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (255)
T PRK07523 10 GRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAVRAAIDAFEAEIGP 87 (255)
T ss_pred CCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 678998885 566676776543 468999999998776655555544432 477788888663210 000145
Q ss_pred ceEEEEcC
Q 026122 147 YDVAVARA 154 (243)
Q Consensus 147 fD~I~~~~ 154 (243)
.|.++.++
T Consensus 88 ~d~li~~a 95 (255)
T PRK07523 88 IDILVNNA 95 (255)
T ss_pred CCEEEECC
Confidence 89998864
No 450
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=81.40 E-value=9.9 Score=36.65 Aligned_cols=94 Identities=13% Similarity=0.053 Sum_probs=54.1
Q ss_pred CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-CCCCceEEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-FREQYDVAVA 152 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~I~~ 152 (243)
..+|+=+||| ..+..+++. ..+.+++.+|.|++.++.+++ . +..++.+|..+...... .-++.|++++
T Consensus 400 ~~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~---g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 400 QPRVIIAGFG--RFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----F---GMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred cCcEEEEecC--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----c---CCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 3577777776 444445543 235789999999998777654 2 35789999887542210 0147888886
Q ss_pred cCcc-cHHHHHHHHccCcccCeEEEEE
Q 026122 153 RAVA-EMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 153 ~~~~-~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
.... +....+-...+.+.|+-.++..
T Consensus 471 ~~~d~~~n~~i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 471 AIDDPQTSLQLVELVKEHFPHLQIIAR 497 (621)
T ss_pred EeCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4322 2222222233344566555543
No 451
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=81.38 E-value=7 Score=27.81 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=41.3
Q ss_pred EcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCcccHHHH
Q 026122 82 VGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRIL 161 (243)
Q Consensus 82 iGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~ 161 (243)
+-||+|.-+-.++. ..++.++++|++ +++...++.+.... ...+|+|+.. +.....
T Consensus 4 ~~Cg~G~sTS~~~~------------------ki~~~~~~~~~~-~~v~~~~~~~~~~~---~~~~Diil~~--Pqv~~~ 59 (96)
T cd05564 4 LVCSAGMSTSILVK------------------KMKKAAEKRGID-AEIEAVPESELEEY---IDDADVVLLG--PQVRYM 59 (96)
T ss_pred EEcCCCchHHHHHH------------------HHHHHHHHCCCc-eEEEEecHHHHHHh---cCCCCEEEEC--hhHHHH
Confidence 56888875543332 357777788875 88888888776432 2579999986 333444
Q ss_pred HHHHccCccc
Q 026122 162 AEYCLPLVRV 171 (243)
Q Consensus 162 l~~~~~~Lkp 171 (243)
++.+.+...+
T Consensus 60 ~~~i~~~~~~ 69 (96)
T cd05564 60 LDEVKKKAAE 69 (96)
T ss_pred HHHHHHHhcc
Confidence 4555543333
No 452
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=81.10 E-value=8.5 Score=31.44 Aligned_cols=100 Identities=13% Similarity=0.164 Sum_probs=61.1
Q ss_pred CCeEEEEcCCCChHHHHHHHH---C-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC---cCCCCce
Q 026122 76 NLKLVDVGTGAGLPGLVLAIA---C-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV---SFREQYD 148 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~---~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~~~fD 148 (243)
+..|+++|+-.|..++..|.. . ...+|+++|++-....-+ +. ..++|.+++++..+..... ...+.+-
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~---a~--e~p~i~f~egss~dpai~eqi~~~~~~y~ 144 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPA---AR--EVPDILFIEGSSTDPAIAEQIRRLKNEYP 144 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChh---hh--cCCCeEEEeCCCCCHHHHHHHHHHhcCCC
Confidence 679999999999887777743 2 237999999986532211 11 1457999999876643210 0112233
Q ss_pred EEEE--cCccc---HHHHHHHHccCcccCeEEEEEeC
Q 026122 149 VAVA--RAVAE---MRILAEYCLPLVRVGGLFVAAKG 180 (243)
Q Consensus 149 ~I~~--~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 180 (243)
-|+. .+... .-.-++...++|.-|-++++..+
T Consensus 145 kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs 181 (237)
T COG3510 145 KIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDS 181 (237)
T ss_pred cEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecc
Confidence 3333 33333 33444556688888888887653
No 453
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=81.09 E-value=11 Score=31.24 Aligned_cols=77 Identities=14% Similarity=0.064 Sum_probs=50.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-------CcCCCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFREQ 146 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~~~ 146 (243)
++++|=.| |+|.++..+++.. .+.+|+.++.+....+......+..+. ++.++.+|+.+.... ....++
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~~~ 89 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERFGH 89 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 67888888 4666777777543 367999999998776665555544332 477888888763211 000136
Q ss_pred ceEEEEcC
Q 026122 147 YDVAVARA 154 (243)
Q Consensus 147 fD~I~~~~ 154 (243)
.|.|+.++
T Consensus 90 id~vi~~a 97 (259)
T PRK08213 90 VDILVNNA 97 (259)
T ss_pred CCEEEECC
Confidence 89998764
No 454
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=81.08 E-value=17 Score=33.86 Aligned_cols=85 Identities=16% Similarity=0.087 Sum_probs=51.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
+++|+=+|+|. +|..+|+.. -+++|+.+|.++.....+ ...|. ++. ++.++. ...|+|+..
T Consensus 254 GKtVgVIG~G~--IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A----~~~G~---~~~--~leell------~~ADIVI~a 316 (476)
T PTZ00075 254 GKTVVVCGYGD--VGKGCAQALRGFGARVVVTEIDPICALQA----AMEGY---QVV--TLEDVV------ETADIFVTA 316 (476)
T ss_pred CCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchhHHHH----HhcCc---eec--cHHHHH------hcCCEEEEC
Confidence 88999999995 444444322 357999999987543222 11232 222 333331 468999985
Q ss_pred CcccHHHHH-HHHccCcccCeEEEEEe
Q 026122 154 AVAEMRILA-EYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 154 ~~~~~~~~l-~~~~~~LkpgG~l~~~~ 179 (243)
. .. ..++ ......+|||++++-..
T Consensus 317 t-Gt-~~iI~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 317 T-GN-KDIITLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred C-Cc-ccccCHHHHhccCCCcEEEEcC
Confidence 4 22 2233 46778899999966543
No 455
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=81.02 E-value=26 Score=29.98 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=50.3
Q ss_pred eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc-------ccccccCCcCCCCceEE
Q 026122 78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-------AETLGKDVSFREQYDVA 150 (243)
Q Consensus 78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-------~~~~~~~~~~~~~fD~I 150 (243)
+|+=+|+|.-...+.......+.+|+.++. ++.++..+ ..++. ++-..++ ..+... ....+|+|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~----~~g~~-~~~~~~~~~~~~~~~~~~~~---~~~~~d~v 72 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALR----ERGLV-IRSDHGDAVVPGPVITDPEE---LTGPFDLV 72 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHH----hCCeE-EEeCCCeEEecceeecCHHH---ccCCCCEE
Confidence 466778876544333322333578999998 55444332 33321 1111001 111110 11568988
Q ss_pred EEcC-cccHHHHHHHHccCcccCeEEEEEe
Q 026122 151 VARA-VAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 151 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+... ....+.+++.+...+.++..++...
T Consensus 73 ilavk~~~~~~~~~~l~~~~~~~~~ii~~~ 102 (305)
T PRK12921 73 ILAVKAYQLDAAIPDLKPLVGEDTVIIPLQ 102 (305)
T ss_pred EEEecccCHHHHHHHHHhhcCCCCEEEEee
Confidence 8643 3457888888888888877666554
No 456
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=80.97 E-value=19 Score=31.07 Aligned_cols=105 Identities=14% Similarity=0.087 Sum_probs=58.3
Q ss_pred CCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc-c-cHHH
Q 026122 85 GAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV-A-EMRI 160 (243)
Q Consensus 85 G~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~-~-~~~~ 160 (243)
|.|..+..++.. ..+.+|+..|.+++..+.++ ..+. + ...+.++..... +..|+|+.... . ..+.
T Consensus 7 GlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~----~~g~---~-~~~s~~~~~~~~---~~advVi~~vp~~~~~~~ 75 (299)
T PRK12490 7 GLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG----KLGI---T-ARHSLEELVSKL---EAPRTIWVMVPAGEVTES 75 (299)
T ss_pred cccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH----HCCC---e-ecCCHHHHHHhC---CCCCEEEEEecCchHHHH
Confidence 445555555543 24578999999987554432 2332 2 122333332110 22577776432 2 4567
Q ss_pred HHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCee
Q 026122 161 LAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASL 201 (243)
Q Consensus 161 ~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~ 201 (243)
+++.+...+++|-. ++..+........++.+.+...|...
T Consensus 76 v~~~i~~~l~~g~i-vid~st~~~~~~~~~~~~~~~~g~~~ 115 (299)
T PRK12490 76 VIKDLYPLLSPGDI-VVDGGNSRYKDDLRRAEELAERGIHY 115 (299)
T ss_pred HHHHHhccCCCCCE-EEECCCCCchhHHHHHHHHHHcCCeE
Confidence 77778888877754 44444444445555666677777643
No 457
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=80.87 E-value=9.1 Score=33.87 Aligned_cols=99 Identities=13% Similarity=0.023 Sum_probs=54.4
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEc--cccc-cccCCcCCCCc
Q 026122 73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRG--RAET-LGKDVSFREQY 147 (243)
Q Consensus 73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~--d~~~-~~~~~~~~~~f 147 (243)
+.++.+||=.|+| .|..++.+|+..+...|++++.+++..+.++ ++|... +..... +..+ +... ..+.+
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~~~l~~~--~~~~~ 254 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAK----QLGATECINPRDQDKPIVEVLTEM--TDGGV 254 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HhCCCeecccccccchHHHHHHHH--hCCCC
Confidence 3457788888764 2333445566654346899998887665553 345431 111111 1111 1000 02469
Q ss_pred eEEEEcCcccHHHHHHHHccCcc-cCeEEEEEe
Q 026122 148 DVAVARAVAEMRILAEYCLPLVR-VGGLFVAAK 179 (243)
Q Consensus 148 D~I~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~ 179 (243)
|+|+...- . ...+..+.+.|+ ++|.++...
T Consensus 255 d~vid~~g-~-~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 255 DYAFEVIG-S-ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred cEEEECCC-C-HHHHHHHHHHhccCCCEEEEEe
Confidence 99996432 1 345566777888 999987653
No 458
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.87 E-value=22 Score=32.40 Aligned_cols=70 Identities=19% Similarity=0.102 Sum_probs=40.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCH-HHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMN-KRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~-~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
+++|+=+|+|....++.......+++|+++|.+. ..++...+...+.+ ++++.++..+-. .+.+|+|+.+
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~-----~~~~d~vv~~ 75 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELG---IELVLGEYPEEF-----LEGVDLVVVS 75 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC---CEEEeCCcchhH-----hhcCCEEEEC
Confidence 6789999887733333333334578999999985 22222122233333 556666665521 1569988875
No 459
>PRK06128 oxidoreductase; Provisional
Probab=80.85 E-value=23 Score=30.30 Aligned_cols=102 Identities=16% Similarity=0.091 Sum_probs=57.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHH--HHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNK--RCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFR 144 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~ 144 (243)
+++||=.|++.| ++..+++.+ .+.+|+.+..+.+ ..+...+.++..+. ++.++.+|+.+..... ...
T Consensus 55 ~k~vlITGas~g-IG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~ 132 (300)
T PRK06128 55 GRKALITGADSG-IGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGR-KAVALPGDLKDEAFCRQLVERAVKEL 132 (300)
T ss_pred CCEEEEecCCCc-HHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 578898886544 555666543 4678887766543 22223333333332 4678888887632100 001
Q ss_pred CCceEEEEcCcc-------------c-----------HHHHHHHHccCcccCeEEEEEe
Q 026122 145 EQYDVAVARAVA-------------E-----------MRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 145 ~~fD~I~~~~~~-------------~-----------~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+..|+++.++.. + ...+++.+.+.++++|.++...
T Consensus 133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~s 191 (300)
T PRK06128 133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTG 191 (300)
T ss_pred CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEEC
Confidence 468999986410 0 1235556667777888877654
No 460
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=80.79 E-value=10 Score=32.76 Aligned_cols=95 Identities=20% Similarity=0.178 Sum_probs=54.9
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccc-cc----cccCCcCCCCc
Q 026122 74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA-ET----LGKDVSFREQY 147 (243)
Q Consensus 74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~----~~~~~~~~~~f 147 (243)
.++.+||=.|+| .|..++.+|+...+.+|++++.+++..+.++ +.|.+. ++...- .+ +... .+.+
T Consensus 161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~----~~g~~~--v~~~~~~~~~~~~v~~~---~~~~ 231 (338)
T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAK----EVGADL--TINSKRVEDVAKIIQEK---TGGA 231 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHH----HcCCcE--EecccccccHHHHHHHh---cCCC
Confidence 457888888864 2344455665533679999999998666663 345432 221110 11 1111 1347
Q ss_pred eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
|.++..... ...++.+.+.|+++|.++...
T Consensus 232 d~vi~~~~~--~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 232 HAAVVTAVA--KAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred cEEEEeCCC--HHHHHHHHHhccCCCEEEEEe
Confidence 844433222 345677888999999987653
No 461
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=80.69 E-value=13 Score=31.55 Aligned_cols=94 Identities=22% Similarity=0.189 Sum_probs=56.8
Q ss_pred CCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc-cccCCcCCCCceEE
Q 026122 74 NSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDVA 150 (243)
Q Consensus 74 ~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~fD~I 150 (243)
.++.+||=.|+ +.|..++.+|+.. +++|+++..+++..+.+ +..|...+-....+..+ +... ...+|++
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~i~~~---~~~~d~v 212 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKAL-GATVTATTRSPERAALL----KELGADEVVIDDGAIAEQLRAA---PGGFDKV 212 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHH----HhcCCcEEEecCccHHHHHHHh---CCCceEE
Confidence 45788888886 3555666677665 57899999988755444 33554322111111111 1111 2569999
Q ss_pred EEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122 151 VARAVAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
+..... ..+..+.+.|+++|+++..
T Consensus 213 l~~~~~---~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 213 LELVGT---ATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred EECCCh---HHHHHHHHHhccCCEEEEE
Confidence 964332 3567778899999997654
No 462
>PRK07814 short chain dehydrogenase; Provisional
Probab=80.33 E-value=12 Score=31.18 Aligned_cols=77 Identities=12% Similarity=0.082 Sum_probs=49.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ 146 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~ 146 (243)
++++|=.|+ +|.++..+++.. .+++|++++.+++..+...+..+..+ .++.++.+|+.+..... ..-++
T Consensus 10 ~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (263)
T PRK07814 10 DQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG-RRAHVVAADLAHPEATAGLAGQAVEAFGR 87 (263)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 678888886 555666666532 46899999999876665555444333 24778888877643210 00136
Q ss_pred ceEEEEcC
Q 026122 147 YDVAVARA 154 (243)
Q Consensus 147 fD~I~~~~ 154 (243)
.|+|+.++
T Consensus 88 id~vi~~A 95 (263)
T PRK07814 88 LDIVVNNV 95 (263)
T ss_pred CCEEEECC
Confidence 89999754
No 463
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=80.31 E-value=31 Score=31.24 Aligned_cols=92 Identities=20% Similarity=0.112 Sum_probs=48.0
Q ss_pred EEEEcCCCChHHHHHHH--HCCCCEEEEEeCCHHHHHHHHHHH------------HH-cCCCCEEEEEccccccccCCcC
Q 026122 79 LVDVGTGAGLPGLVLAI--ACPDWKVTLLESMNKRCVFLEHAV------------SL-TQLLNVQIVRGRAETLGKDVSF 143 (243)
Q Consensus 79 VLDiGcG~G~~~~~la~--~~~~~~v~~vD~s~~~~~~a~~~~------------~~-~~~~~v~~~~~d~~~~~~~~~~ 143 (243)
|-=||+|. +|..+|. ...+.+|+++|.+++.++..++.. .+ ....++++. .+..+..
T Consensus 3 I~vIGlG~--~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~-~~~~~~~----- 74 (411)
T TIGR03026 3 IAVIGLGY--VGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRAT-TDYEDAI----- 74 (411)
T ss_pred EEEECCCc--hhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEE-CCHHHHH-----
Confidence 44566664 3333433 234679999999998776543210 00 000112221 2222211
Q ss_pred CCCceEEEEcCc-----------ccHHHHHHHHccCcccCeEEEEEe
Q 026122 144 REQYDVAVARAV-----------AEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 144 ~~~fD~I~~~~~-----------~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
...|+|+..-. .......+.+.+.+++|-.++..+
T Consensus 75 -~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 75 -RDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred -hhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 35788886321 125666677777888776655443
No 464
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=79.85 E-value=45 Score=30.40 Aligned_cols=38 Identities=13% Similarity=-0.066 Sum_probs=24.5
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHH
Q 026122 77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVF 114 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~ 114 (243)
.+|.=||.|.-...+..+....+.+|+++|++++.++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~ 41 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDT 41 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 46667777754333333323346899999999987765
No 465
>PLN02702 L-idonate 5-dehydrogenase
Probab=79.56 E-value=15 Score=32.33 Aligned_cols=100 Identities=15% Similarity=0.166 Sum_probs=55.7
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEE---ccccc-cc-cCCcCCCCc
Q 026122 74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR---GRAET-LG-KDVSFREQY 147 (243)
Q Consensus 74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~---~d~~~-~~-~~~~~~~~f 147 (243)
.++.+||=+|+| .|..++.+|+..+...|+++|.++...+.+ +.++...+.... .+..+ +. ........+
T Consensus 180 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (364)
T PLN02702 180 GPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVA----KQLGADEIVLVSTNIEDVESEVEEIQKAMGGGI 255 (364)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH----HHhCCCEEEecCcccccHHHHHHHHhhhcCCCC
Confidence 347788888764 344456667665444689999987655544 344543221111 11111 00 000011468
Q ss_pred eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
|+|+..... ...+..+.+.|+++|+++...
T Consensus 256 d~vid~~g~--~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 256 DVSFDCVGF--NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CEEEECCCC--HHHHHHHHHHHhcCCEEEEEc
Confidence 999874321 234677788999999976543
No 466
>PRK10083 putative oxidoreductase; Provisional
Probab=79.43 E-value=13 Score=32.15 Aligned_cols=98 Identities=11% Similarity=0.025 Sum_probs=52.0
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEccccccccCCcCCCCceEE
Q 026122 74 NSNLKLVDVGTG-AGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYDVA 150 (243)
Q Consensus 74 ~~~~~VLDiGcG-~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~fD~I 150 (243)
.++.+|+=.|+| .|..++.+|+. .+...++++|.+++..+.++ .+|.+.+ .....++.+.... ....+|+|
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~----~~Ga~~~i~~~~~~~~~~~~~--~g~~~d~v 232 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAK----ESGADWVINNAQEPLGEALEE--KGIKPTLI 232 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH----HhCCcEEecCccccHHHHHhc--CCCCCCEE
Confidence 447888888854 12233344443 34346899999987665554 3454321 1111111111110 01235677
Q ss_pred EEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 151 VARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+..... ...+..+.+.|+++|+++.+.
T Consensus 233 id~~g~--~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 233 IDAACH--PSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred EECCCC--HHHHHHHHHHhhcCCEEEEEc
Confidence 753321 234566778999999987654
No 467
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=78.73 E-value=11 Score=32.64 Aligned_cols=89 Identities=15% Similarity=0.118 Sum_probs=51.2
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
+.+|+=+|+|. |...+..++.. +++|+.+|.++...+. ++..+. +++ +..++... -..+|+|+...
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~~----~~~~G~---~~~--~~~~l~~~---l~~aDiVI~t~ 218 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKSAHLAR----ITEMGL---SPF--HLSELAEE---VGKIDIIFNTI 218 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHH----HHHcCC---eee--cHHHHHHH---hCCCCEEEECC
Confidence 78999999974 22333333333 5799999999864333 334443 222 11222111 14699999853
Q ss_pred cccHHHHHHHHccCcccCeEEEEEe
Q 026122 155 VAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 155 ~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
.. ..+-+...+.++||+.++-..
T Consensus 219 p~--~~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 219 PA--LVLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred Ch--hhhhHHHHHcCCCCcEEEEEc
Confidence 22 223455667788988766433
No 468
>PRK06701 short chain dehydrogenase; Provisional
Probab=78.64 E-value=18 Score=30.95 Aligned_cols=102 Identities=12% Similarity=0.114 Sum_probs=57.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHH-HHHHHHHHHHHcCCCCEEEEEccccccccCCc-------CCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNK-RCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FRE 145 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~-~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-------~~~ 145 (243)
++++|=.|++.| ++..++..+ .+.+|+.++.++. ..+......+..+ .++.++.+|+.+...... ..+
T Consensus 46 ~k~iLItGasgg-IG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~i~~~~~ 123 (290)
T PRK06701 46 GKVALITGGDSG-IGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG-VKCLLIPGDVSDEAFCKDAVEETVRELG 123 (290)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 678888887555 455555443 3689999988753 2233333333333 247788888865321100 013
Q ss_pred CceEEEEcCcc------------------------cHHHHHHHHccCcccCeEEEEEe
Q 026122 146 QYDVAVARAVA------------------------EMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 146 ~fD~I~~~~~~------------------------~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+.|+++.++.. ....+++.+.+.++++|.+++..
T Consensus 124 ~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 124 RLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 57988865310 12334445555566778877655
No 469
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=78.44 E-value=3.6 Score=38.01 Aligned_cols=90 Identities=19% Similarity=0.254 Sum_probs=54.3
Q ss_pred CCeEEEEcCCCChHHHHHHH--HCCCCEEE------EEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCc
Q 026122 76 NLKLVDVGTGAGLPGLVLAI--ACPDWKVT------LLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQY 147 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~--~~~~~~v~------~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~f 147 (243)
+++|+=||||+= +...|. +..+.+|+ +||.+.... ..+...|+. + .++.+.. ...
T Consensus 36 gKtIaIIGyGSq--G~AqAlNLrdSGvnVvvglr~~~id~~~~s~----~kA~~dGF~---v--~~~~Ea~------~~A 98 (487)
T PRK05225 36 GKKIVIVGCGAQ--GLNQGLNMRDSGLDISYALRKEAIAEKRASW----RKATENGFK---V--GTYEELI------PQA 98 (487)
T ss_pred CCEEEEEccCHH--HHHHhCCCccccceeEEeccccccccccchH----HHHHhcCCc---c--CCHHHHH------HhC
Confidence 889999999863 322332 12244555 444444432 333333542 1 3444432 468
Q ss_pred eEEEEcCcc-cHHHHHHHHccCcccCeEEEEEeCCC
Q 026122 148 DVAVARAVA-EMRILAEYCLPLVRVGGLFVAAKGHD 182 (243)
Q Consensus 148 D~I~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~ 182 (243)
|+|++-... ....+.+.+.+.||||..|.+.+|.+
T Consensus 99 DvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFn 134 (487)
T PRK05225 99 DLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFN 134 (487)
T ss_pred CEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCce
Confidence 999985422 35666789999999999999977643
No 470
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.01 E-value=16 Score=29.74 Aligned_cols=77 Identities=17% Similarity=0.119 Sum_probs=48.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ 146 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~ 146 (243)
+.+++=.|+ +|.++..+++.. .+.+|++++.++...+.........+ .++.++.+|+.+..... ...+.
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG-VKVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 567888885 666776766542 46799999999876554444443333 24788888876542100 00136
Q ss_pred ceEEEEcC
Q 026122 147 YDVAVARA 154 (243)
Q Consensus 147 fD~I~~~~ 154 (243)
.|+|+.++
T Consensus 85 id~vi~~a 92 (239)
T PRK07666 85 IDILINNA 92 (239)
T ss_pred ccEEEEcC
Confidence 89999764
No 471
>PRK05867 short chain dehydrogenase; Provisional
Probab=77.98 E-value=15 Score=30.37 Aligned_cols=77 Identities=17% Similarity=0.116 Sum_probs=49.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ 146 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~ 146 (243)
++++|=.|+++|. +..+++.. .+.+|++++.+++.++...+..+..+ .++.++.+|+.+..... ...++
T Consensus 9 ~k~vlVtGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T PRK05867 9 GKRALITGASTGI-GKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTAELGG 86 (253)
T ss_pred CCEEEEECCCchH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 6789999987664 44555432 46799999999887766655555444 34777888876532100 00146
Q ss_pred ceEEEEcC
Q 026122 147 YDVAVARA 154 (243)
Q Consensus 147 fD~I~~~~ 154 (243)
.|.++.++
T Consensus 87 id~lv~~a 94 (253)
T PRK05867 87 IDIAVCNA 94 (253)
T ss_pred CCEEEECC
Confidence 89998763
No 472
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=77.90 E-value=28 Score=30.09 Aligned_cols=88 Identities=15% Similarity=0.050 Sum_probs=50.3
Q ss_pred CCeEEEEcCCCChHHHHHHHH--CCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIA--CPD--WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 151 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~--~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 151 (243)
..+|.=||+|. +|..++.. ..+ .+|+++|.+++..+.++ ..+.. .. ...+..+. -...|+|+
T Consensus 6 ~~~I~IIG~G~--mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~----~~g~~-~~-~~~~~~~~------~~~aDvVi 71 (307)
T PRK07502 6 FDRVALIGIGL--IGSSLARAIRRLGLAGEIVGADRSAETRARAR----ELGLG-DR-VTTSAAEA------VKGADLVI 71 (307)
T ss_pred CcEEEEEeeCH--HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH----hCCCC-ce-ecCCHHHH------hcCCCEEE
Confidence 35788888775 33233322 222 48999999987655443 34432 11 11222221 14589999
Q ss_pred EcCc-ccHHHHHHHHccCcccCeEEEE
Q 026122 152 ARAV-AEMRILAEYCLPLVRVGGLFVA 177 (243)
Q Consensus 152 ~~~~-~~~~~~l~~~~~~LkpgG~l~~ 177 (243)
.... .....+++.+...+++|..++.
T Consensus 72 iavp~~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 72 LCVPVGASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred ECCCHHHHHHHHHHHHhhCCCCCEEEe
Confidence 7653 3346677777788888876543
No 473
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=77.86 E-value=12 Score=32.68 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=54.6
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc----cccCCcCCCCceE
Q 026122 75 SNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----LGKDVSFREQYDV 149 (243)
Q Consensus 75 ~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~~~~fD~ 149 (243)
++.+||-.|+| .|..++.+|+..+..+|++++.+++..+.++ +.|.. .++..+-.+ +... ..+.+|+
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~----~~g~~--~~~~~~~~~~~~~~~~~--~~~~~d~ 246 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAK----AAGAD--VVVNGSDPDAAKRIIKA--AGGGVDA 246 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HhCCc--EEecCCCccHHHHHHHH--hCCCCcE
Confidence 47788888764 3444455666653338999999887665553 34542 222221111 1111 0136899
Q ss_pred EEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122 150 AVARAVAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
++..... ...+..+.+.|+++|.++..
T Consensus 247 vid~~g~--~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 247 VIDFVNN--SATASLAFDILAKGGKLVLV 273 (350)
T ss_pred EEECCCC--HHHHHHHHHHhhcCCeEEEE
Confidence 9964322 23567778889999997754
No 474
>PRK06139 short chain dehydrogenase; Provisional
Probab=77.85 E-value=11 Score=33.24 Aligned_cols=77 Identities=18% Similarity=0.127 Sum_probs=50.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ 146 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~ 146 (243)
+++||=.|+++| ++..+++.+ .+++|+.++.+++.++...+.++..+. ++.++..|+.+...-. ...+.
T Consensus 7 ~k~vlITGAs~G-IG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 84 (330)
T PRK06139 7 GAVVVITGASSG-IGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTDADQVKALATQAASFGGR 84 (330)
T ss_pred CCEEEEcCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 678888888655 444555432 468999999999887766666665553 4677778876532100 00146
Q ss_pred ceEEEEcC
Q 026122 147 YDVAVARA 154 (243)
Q Consensus 147 fD~I~~~~ 154 (243)
.|+++.++
T Consensus 85 iD~lVnnA 92 (330)
T PRK06139 85 IDVWVNNV 92 (330)
T ss_pred CCEEEECC
Confidence 89999864
No 475
>PRK07576 short chain dehydrogenase; Provisional
Probab=77.79 E-value=16 Score=30.50 Aligned_cols=77 Identities=16% Similarity=-0.000 Sum_probs=46.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ 146 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~ 146 (243)
++++|=.|. +|.++..+++.+ .+++|++++.+++.++...+.....+. ++.++..|+.+..... ...++
T Consensus 9 ~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~i~~~~~~~~~~~~~ 86 (264)
T PRK07576 9 GKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVRDYAAVEAAFAQIADEFGP 86 (264)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 678888885 555555555432 468999999988765544444433332 4677788876532100 00135
Q ss_pred ceEEEEcC
Q 026122 147 YDVAVARA 154 (243)
Q Consensus 147 fD~I~~~~ 154 (243)
.|+++.++
T Consensus 87 iD~vi~~a 94 (264)
T PRK07576 87 IDVLVSGA 94 (264)
T ss_pred CCEEEECC
Confidence 79998753
No 476
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=77.53 E-value=7.4 Score=29.41 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=39.9
Q ss_pred CCeEEEEcCCCC-hHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAG-LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G-~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
+.+|+=+|+|-- ...+......+..+|+.+..+.+.. ++.++..+-.+++++ ++.++... ...+|+|++..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra---~~l~~~~~~~~~~~~--~~~~~~~~---~~~~DivI~aT 83 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERA---EALAEEFGGVNIEAI--PLEDLEEA---LQEADIVINAT 83 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHH---HHHHHHHTGCSEEEE--EGGGHCHH---HHTESEEEE-S
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHH---HHHHHHcCcccccee--eHHHHHHH---HhhCCeEEEec
Confidence 789999999732 2222222233345699999998644 444444433335554 33443311 15799999854
No 477
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=77.31 E-value=15 Score=31.85 Aligned_cols=97 Identities=18% Similarity=0.132 Sum_probs=53.3
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc---c-cccccCCcCCCCce
Q 026122 74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR---A-ETLGKDVSFREQYD 148 (243)
Q Consensus 74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d---~-~~~~~~~~~~~~fD 148 (243)
.++.+|+=.||| .|..++.+|+..+...+++++.++...+.+ +.+|.. .++..+ . .++... .....+|
T Consensus 167 ~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~----~~~ga~--~v~~~~~~~~~~~i~~~-~~~~~~d 239 (345)
T cd08287 167 RPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALA----REFGAT--DIVAERGEEAVARVREL-TGGVGAD 239 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH----HHcCCc--eEecCCcccHHHHHHHh-cCCCCCC
Confidence 346676667764 333445566665433599999887544433 345542 222211 1 111100 0013589
Q ss_pred EEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 149 VAVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+++..... ...+..+.+.++++|.++...
T Consensus 240 ~il~~~g~--~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 240 AVLECVGT--QESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred EEEECCCC--HHHHHHHHHhhccCCEEEEec
Confidence 99864322 346677788899999987653
No 478
>PRK06125 short chain dehydrogenase; Provisional
Probab=77.31 E-value=18 Score=29.96 Aligned_cols=78 Identities=14% Similarity=0.103 Sum_probs=48.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC---CcCCCCceEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD---VSFREQYDVA 150 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~~~fD~I 150 (243)
++++|=.|++.| ++..+++.+ .+++|++++.+++..+.+...++...-.++.++..|+.+.... ....++.|.+
T Consensus 7 ~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~l 85 (259)
T PRK06125 7 GKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDIL 85 (259)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCEE
Confidence 678888897655 555555432 4679999999987766555555443223477888887653210 0001468998
Q ss_pred EEcC
Q 026122 151 VARA 154 (243)
Q Consensus 151 ~~~~ 154 (243)
+.++
T Consensus 86 v~~a 89 (259)
T PRK06125 86 VNNA 89 (259)
T ss_pred EECC
Confidence 8753
No 479
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=77.23 E-value=10 Score=26.98 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=36.0
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122 77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
.+|| +-||+|.-+-.++. ..++.+++.|++ +++...++.++.... ..+|+|+..
T Consensus 4 ~~IL-l~C~~G~sSS~l~~------------------k~~~~~~~~gi~-~~v~a~~~~~~~~~~---~~~Dvill~ 57 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVN------------------KMNKAAEEYGVP-VKIAAGSYGAAGEKL---DDADVVLLA 57 (95)
T ss_pred cEEE-EECCCchhHHHHHH------------------HHHHHHHHCCCc-EEEEEecHHHHHhhc---CCCCEEEEC
Confidence 4555 78999976544442 246667777774 788888877764322 568999986
No 480
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=77.22 E-value=7.4 Score=28.04 Aligned_cols=72 Identities=14% Similarity=0.071 Sum_probs=45.8
Q ss_pred EcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCcccHHHH
Q 026122 82 VGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRIL 161 (243)
Q Consensus 82 iGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~ 161 (243)
+.||+|.-+-.++. ..++.+++.|++ +++......++.... +.+|+|+.. +...-.
T Consensus 5 l~C~~GaSSs~la~------------------km~~~a~~~gi~-~~i~a~~~~e~~~~~---~~~Dvill~--PQv~~~ 60 (99)
T cd05565 5 VLCAGGGTSGLLAN------------------ALNKGAKERGVP-LEAAAGAYGSHYDMI---PDYDLVILA--PQMASY 60 (99)
T ss_pred EECCCCCCHHHHHH------------------HHHHHHHHCCCc-EEEEEeeHHHHHHhc---cCCCEEEEc--ChHHHH
Confidence 66788865544442 356777778874 778887777765432 579999986 334444
Q ss_pred HHHHccCcccCeEEEE
Q 026122 162 AEYCLPLVRVGGLFVA 177 (243)
Q Consensus 162 l~~~~~~LkpgG~l~~ 177 (243)
++.+.+...+-|.-+.
T Consensus 61 ~~~i~~~~~~~~ipv~ 76 (99)
T cd05565 61 YDELKKDTDRLGIKLV 76 (99)
T ss_pred HHHHHHHhhhcCCCEE
Confidence 5556666666665343
No 481
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=77.20 E-value=24 Score=30.20 Aligned_cols=104 Identities=14% Similarity=0.097 Sum_probs=59.5
Q ss_pred CCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc--ccHHH
Q 026122 85 GAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV--AEMRI 160 (243)
Q Consensus 85 G~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~--~~~~~ 160 (243)
|.|..+..++... .+.+|++.|.+++.++.+.+ .+. .. ..+..+.. ...|+|+..-. .....
T Consensus 3 GlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~----~g~---~~-~~s~~~~~------~~advVil~vp~~~~~~~ 68 (288)
T TIGR01692 3 GLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVA----AGA---QA-AASPAEAA------EGADRVITMLPAGQHVIS 68 (288)
T ss_pred cccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----cCC---ee-cCCHHHHH------hcCCEEEEeCCChHHHHH
Confidence 5566665565542 45799999999876554332 232 11 22222221 45798887532 23455
Q ss_pred HH---HHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeE
Q 026122 161 LA---EYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ 203 (243)
Q Consensus 161 ~l---~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 203 (243)
++ +.+...+++| .+++..+.......+++.+.+.+.|...++
T Consensus 69 v~~g~~~l~~~~~~g-~~vid~st~~p~~~~~~~~~~~~~g~~~vd 113 (288)
T TIGR01692 69 VYSGDEGILPKVAKG-SLLIDCSTIDPDSARKLAELAAAHGAVFMD 113 (288)
T ss_pred HHcCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 55 4566667666 445555555555666677777778876543
No 482
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=76.93 E-value=15 Score=31.83 Aligned_cols=94 Identities=14% Similarity=0.103 Sum_probs=51.6
Q ss_pred CCCCeEEEEcCCCChHH---HHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccc----ccCCcCCCC
Q 026122 74 NSNLKLVDVGTGAGLPG---LVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL----GKDVSFREQ 146 (243)
Q Consensus 74 ~~~~~VLDiGcG~G~~~---~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~~ 146 (243)
.++.+||=.|+ |.++ +.+|+.....+|++++.+++..+.++ ++|.. .+..+-.++ ... .....
T Consensus 166 ~~~~~vlI~g~--g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~----~~g~~---~~~~~~~~~~~~l~~~-~~~~~ 235 (344)
T cd08284 166 RPGDTVAVIGC--GPVGLCAVLSAQVLGAARVFAVDPVPERLERAA----ALGAE---PINFEDAEPVERVREA-TEGRG 235 (344)
T ss_pred ccCCEEEEECC--cHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH----HhCCe---EEecCCcCHHHHHHHH-hCCCC
Confidence 34777777765 4444 44555543238999988876554433 34532 122111111 100 00146
Q ss_pred ceEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 147 YDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 147 fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+|+++..... ...+..+.+.++++|+++.+.
T Consensus 236 ~dvvid~~~~--~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 236 ADVVLEAVGG--AAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred CCEEEECCCC--HHHHHHHHHhcccCCEEEEEC
Confidence 9999864322 235667778889999977553
No 483
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=76.77 E-value=34 Score=32.84 Aligned_cols=57 Identities=9% Similarity=0.145 Sum_probs=42.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 154 (243)
..+|| +-||+|.-+-.+.+. ..++.++++|++ +++.++++.+.+... +.+|+|++..
T Consensus 506 ~mKIL-vaCGsGiGTStmva~-----------------kIkk~Lke~GI~-veV~~~~Vsev~s~~---~~aDIIVtt~ 562 (602)
T PRK09548 506 PVRIL-AVCGQGQGSSMMMKM-----------------KIKKYLDKRGIP-IIMDSCAVNDYKGKL---ETIDIIVCSK 562 (602)
T ss_pred ccEEE-EECCCCchHHHHHHH-----------------HHHHHHHHcCCC-eEEEEechHhCcccC---CCCCEEEEcc
Confidence 45666 789999876555433 367888889985 789999998876532 5689999864
No 484
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=76.68 E-value=13 Score=32.28 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=42.2
Q ss_pred CEEEEEeCCHHHHH-HHHHHHHHcCC--CCEEEEEccccccccCCcCCCCceEEEEcCcc-----------------cHH
Q 026122 100 WKVTLLESMNKRCV-FLEHAVSLTQL--LNVQIVRGRAETLGKDVSFREQYDVAVARAVA-----------------EMR 159 (243)
Q Consensus 100 ~~v~~vD~s~~~~~-~a~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~-----------------~~~ 159 (243)
.++..+|++++.++ .+......... .++++..+|.+++ ...|+|+..+-. -+.
T Consensus 22 ~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~-------~daDivVitag~~rk~g~~R~dll~~N~~i~~ 94 (299)
T TIGR01771 22 DEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDC-------KDADLVVITAGAPQKPGETRLELVGRNVRIMK 94 (299)
T ss_pred CEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHH-------CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHH
Confidence 47999999876432 22222222111 2355655555554 457999874311 134
Q ss_pred HHHHHHccCcccCeEEEEEeCC
Q 026122 160 ILAEYCLPLVRVGGLFVAAKGH 181 (243)
Q Consensus 160 ~~l~~~~~~LkpgG~l~~~~~~ 181 (243)
++.+.+.+. .|.|++++..++
T Consensus 95 ~~~~~i~~~-~p~~~vivvsNP 115 (299)
T TIGR01771 95 SIVPEVVKS-GFDGIFLVATNP 115 (299)
T ss_pred HHHHHHHHh-CCCeEEEEeCCH
Confidence 555555554 689998876653
No 485
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=76.61 E-value=16 Score=30.67 Aligned_cols=96 Identities=17% Similarity=0.029 Sum_probs=56.8
Q ss_pred CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccc----ccCCcCCCC
Q 026122 73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL----GKDVSFREQ 146 (243)
Q Consensus 73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~~ 146 (243)
+.++.+||=.|+ +.|..++.+++.. +.+|++++.+++..+.++ ..+... ++..+-..+ ... .....
T Consensus 134 ~~~g~~vlI~g~~g~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~----~~g~~~--~~~~~~~~~~~~~~~~-~~~~~ 205 (320)
T cd05286 134 VKPGDTVLVHAAAGGVGLLLTQWAKAL-GATVIGTVSSEEKAELAR----AAGADH--VINYRDEDFVERVREI-TGGRG 205 (320)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHH----HCCCCE--EEeCCchhHHHHHHHH-cCCCC
Confidence 345788888885 3555566667665 678999998887655543 345432 222111111 000 00146
Q ss_pred ceEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122 147 YDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 147 fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
+|+++..... ..+..+.+.++++|.++...
T Consensus 206 ~d~vl~~~~~---~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 206 VDVVYDGVGK---DTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred eeEEEECCCc---HhHHHHHHhhccCcEEEEEe
Confidence 9999964322 35566778899999977553
No 486
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=76.60 E-value=13 Score=32.40 Aligned_cols=94 Identities=14% Similarity=0.093 Sum_probs=54.7
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc----cccc-cccCCcCCCCc
Q 026122 74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG----RAET-LGKDVSFREQY 147 (243)
Q Consensus 74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~----d~~~-~~~~~~~~~~f 147 (243)
.++.+||=.||| .|...+.+|+.. +.+|++++.+++..+.++ ..|.. +++.. +..+ +... ..+.+
T Consensus 164 ~~~~~vlV~g~g~vg~~~~~~a~~~-G~~vi~~~~~~~~~~~~~----~~g~~--~~i~~~~~~~~~~~~~~~--~~~~~ 234 (345)
T cd08260 164 KPGEWVAVHGCGGVGLSAVMIASAL-GARVIAVDIDDDKLELAR----ELGAV--ATVNASEVEDVAAAVRDL--TGGGA 234 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHH----HhCCC--EEEccccchhHHHHHHHH--hCCCC
Confidence 447788888864 233345555554 679999999987665553 34553 22221 1111 1100 01369
Q ss_pred eEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122 148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
|+++..... ...+..+.+.|+++|.++.+
T Consensus 235 d~vi~~~g~--~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 235 HVSVDALGI--PETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred CEEEEcCCC--HHHHHHHHHHhhcCCEEEEe
Confidence 999975321 33456677889999997754
No 487
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=76.60 E-value=8 Score=30.41 Aligned_cols=86 Identities=16% Similarity=0.132 Sum_probs=46.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCC--C--CEEEEEccccccccCCcCCCCceEE
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQL--L--NVQIVRGRAETLGKDVSFREQYDVA 150 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~--~v~~~~~d~~~~~~~~~~~~~fD~I 150 (243)
+.+|.=.|+|+...++.-..-. +..-...+|.++. +.|. + .+.++.-+ ++.. ...|+|
T Consensus 68 gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~----------K~G~~~PGt~ipI~~p~--~l~~-----~~pd~v 130 (160)
T PF08484_consen 68 GKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPL----------KQGKYLPGTHIPIVSPE--ELKE-----RKPDYV 130 (160)
T ss_dssp T--EEEE---SHHHHHHHHHT--TTTS--EEES-GG----------GTTEE-TTT--EEEEGG--G--S-----S--SEE
T ss_pred CCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChh----------hcCcccCCCCCeECCHH--HHhh-----CCCCEE
Confidence 7899999999987753333221 3334677899874 2221 2 24444322 3321 457999
Q ss_pred EEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122 151 VARAVAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
+..++.-.+++++.+...++.||++++.
T Consensus 131 ivlaw~y~~EI~~~~~~~~~~gg~fi~p 158 (160)
T PF08484_consen 131 IVLAWNYKDEIIEKLREYLERGGKFIVP 158 (160)
T ss_dssp EES-GGGHHHHHHHTHHHHHTT-EEEE-
T ss_pred EEcChhhHHHHHHHHHHHHhcCCEEEEe
Confidence 9888888899999999999999998873
No 488
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=76.56 E-value=30 Score=30.32 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=53.5
Q ss_pred CCeEEEEcCCCChHHHHHHH----HCCCCEEEEEeCCHHHHH-HHHHHHHHcCCCC-EEEEE-ccccccccCCcCCCCce
Q 026122 76 NLKLVDVGTGAGLPGLVLAI----ACPDWKVTLLESMNKRCV-FLEHAVSLTQLLN-VQIVR-GRAETLGKDVSFREQYD 148 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~----~~~~~~v~~vD~s~~~~~-~a~~~~~~~~~~~-v~~~~-~d~~~~~~~~~~~~~fD 148 (243)
..+|.=||| |.++..+|. ..-..++..+|++++.++ .+........+.+ ..+.. +|.+++ ...|
T Consensus 3 ~~Ki~IiGa--G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~-------~~ad 73 (312)
T cd05293 3 RNKVTVVGV--GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT-------ANSK 73 (312)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh-------CCCC
Confidence 568899998 454433332 222357999999876442 3333322222211 24443 566654 4579
Q ss_pred EEEEcC-c-----c-----------cHHHHHHHHccCcccCeEEEEEeCC
Q 026122 149 VAVARA-V-----A-----------EMRILAEYCLPLVRVGGLFVAAKGH 181 (243)
Q Consensus 149 ~I~~~~-~-----~-----------~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (243)
+|+..+ . . -+.++.+.+.+. .|+|++++..++
T Consensus 74 ivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 122 (312)
T cd05293 74 VVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNP 122 (312)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccCh
Confidence 988742 1 0 134455555555 689998876653
No 489
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=76.54 E-value=18 Score=29.96 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=46.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHH-cCCCCEEEEEccccccccCC-------cCCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSL-TQLLNVQIVRGRAETLGKDV-------SFRE 145 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~v~~~~~d~~~~~~~~-------~~~~ 145 (243)
+++||=.|++ |.++..+++.+ .+++|+.+|.+....+........ .+-.++.++.+|+.+..... ...+
T Consensus 2 ~k~ilItG~~-~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGGG-QTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4578888854 55555565433 468999999988765544333322 22234788888877532100 0014
Q ss_pred CceEEEEcC
Q 026122 146 QYDVAVARA 154 (243)
Q Consensus 146 ~fD~I~~~~ 154 (243)
+.|.|+.++
T Consensus 81 ~id~vv~~a 89 (259)
T PRK12384 81 RVDLLVYNA 89 (259)
T ss_pred CCCEEEECC
Confidence 679888754
No 490
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=76.50 E-value=7.2 Score=34.94 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=38.0
Q ss_pred EEEEcCCCChHHHHHHHH---CCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122 79 LVDVGTGAGLPGLVLAIA---CPDW-KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 153 (243)
Q Consensus 79 VLDiGcG~G~~~~~la~~---~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 153 (243)
|+=+|| |..+...++. .+.. +|+..|.+.+.++.. ++.....+++.+..|+.+.......-...|+|+..
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~---~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERL---AEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHH---HT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHH---HhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 456788 6665444432 2333 899999999754433 33223346889998887743211111467999974
No 491
>PRK07677 short chain dehydrogenase; Provisional
Probab=76.44 E-value=19 Score=29.74 Aligned_cols=76 Identities=12% Similarity=0.015 Sum_probs=46.3
Q ss_pred CeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCCc
Q 026122 77 LKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQY 147 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~f 147 (243)
+++|=.|++.| ++..+++. ..+++|++++.++...+.+.+.++..+ .++.++.+|+.+..... ...++.
T Consensus 2 k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 57888888666 44444433 246799999999876655554444333 35788888876532110 001367
Q ss_pred eEEEEcC
Q 026122 148 DVAVARA 154 (243)
Q Consensus 148 D~I~~~~ 154 (243)
|.++.++
T Consensus 80 d~lI~~a 86 (252)
T PRK07677 80 DALINNA 86 (252)
T ss_pred cEEEECC
Confidence 9988754
No 492
>PF13487 HD_5: HD domain; PDB: 3TMD_A 3TM8_B 3TMC_A 3TMB_B.
Probab=76.42 E-value=1.1 Score=29.38 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=6.8
Q ss_pred CcCCCCCCccchH
Q 026122 3 FFNGTGYPFSVFM 15 (243)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (243)
.+||+|||.++.-
T Consensus 42 r~DGsGyP~gl~g 54 (64)
T PF13487_consen 42 RWDGSGYPRGLKG 54 (64)
T ss_dssp -TBS-S-TT--BG
T ss_pred CCcCCCCCCCCCH
Confidence 4799999998765
No 493
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=76.20 E-value=14 Score=32.85 Aligned_cols=99 Identities=18% Similarity=0.149 Sum_probs=53.9
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccc-cccccCCcCCCCceEEE
Q 026122 74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA-ETLGKDVSFREQYDVAV 151 (243)
Q Consensus 74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~fD~I~ 151 (243)
.++.+||=.|+| .|..++.+|+..+..+|+++|.++...+.++ +.|..-+.....+. ..+.... ...+|+++
T Consensus 175 ~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~i~~~~--~~~~d~v~ 248 (375)
T cd08282 175 QPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAE----SIGAIPIDFSDGDPVEQILGLE--PGGVDRAV 248 (375)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HcCCeEeccCcccHHHHHHHhh--CCCCCEEE
Confidence 447788777775 3445556666654348999999987655544 34431011111111 1111100 13589988
Q ss_pred EcCccc---------HHHHHHHHccCcccCeEEEEE
Q 026122 152 ARAVAE---------MRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 152 ~~~~~~---------~~~~l~~~~~~LkpgG~l~~~ 178 (243)
...... ....+..+.+.|+++|.+...
T Consensus 249 d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 284 (375)
T cd08282 249 DCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIV 284 (375)
T ss_pred ECCCCcccccccccchHHHHHHHHHHhhcCcEEEEE
Confidence 643211 123466778899999997543
No 494
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=76.17 E-value=2.5 Score=33.42 Aligned_cols=95 Identities=17% Similarity=0.124 Sum_probs=56.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc-CCcCCCCceEEEEcC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK-DVSFREQYDVAVARA 154 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~fD~I~~~~ 154 (243)
+.+|+=|||=+-...+.- ...++.+++..|.+...-. .+- + +++.=|..+... .....++||+|++.-
T Consensus 26 ~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~--------~~~-~-~F~fyD~~~p~~~~~~l~~~~d~vv~DP 94 (162)
T PF10237_consen 26 DTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQ--------FGG-D-EFVFYDYNEPEELPEELKGKFDVVVIDP 94 (162)
T ss_pred CCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHh--------cCC-c-ceEECCCCChhhhhhhcCCCceEEEECC
Confidence 579999999665543222 1236789999999975322 221 2 233334433211 112237899999964
Q ss_pred c----ccHHHHHHHHccCcccCeEEEEEeCC
Q 026122 155 V----AEMRILAEYCLPLVRVGGLFVAAKGH 181 (243)
Q Consensus 155 ~----~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (243)
. .-+....+.+.-++++++.+++..|.
T Consensus 95 PFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~ 125 (162)
T PF10237_consen 95 PFLSEECLTKTAETIRLLLKPGGKIILCTGE 125 (162)
T ss_pred CCCCHHHHHHHHHHHHHHhCccceEEEecHH
Confidence 1 12344556666777889998887774
No 495
>PRK06181 short chain dehydrogenase; Provisional
Probab=76.16 E-value=19 Score=29.92 Aligned_cols=76 Identities=14% Similarity=0.042 Sum_probs=45.9
Q ss_pred CeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-------CCCCc
Q 026122 77 LKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FREQY 147 (243)
Q Consensus 77 ~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-------~~~~f 147 (243)
.+||=.|+ +|.++..+++. ..+.+|++++.++...+...+..+..+ .++.++.+|+.+...... ..+..
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG-GEALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 35776665 45566666543 246899999999876655444444433 257788888866421100 01357
Q ss_pred eEEEEcC
Q 026122 148 DVAVARA 154 (243)
Q Consensus 148 D~I~~~~ 154 (243)
|.|+.++
T Consensus 80 d~vi~~a 86 (263)
T PRK06181 80 DILVNNA 86 (263)
T ss_pred CEEEECC
Confidence 9998764
No 496
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=75.83 E-value=17 Score=25.47 Aligned_cols=85 Identities=12% Similarity=0.069 Sum_probs=52.8
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC---cccHHHHHHHHccCcccCeEEEEE
Q 026122 102 VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA---VAEMRILAEYCLPLVRVGGLFVAA 178 (243)
Q Consensus 102 v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~---~~~~~~~l~~~~~~LkpgG~l~~~ 178 (243)
|.-+|-++...+..++..+..++..+. ...+..+..... ....+|+|+... ..+..++++.+++.- ++..++++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~-~~~~~~~~~~~~-~~~~~d~iiid~~~~~~~~~~~~~~i~~~~-~~~~ii~~ 77 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVT-TASSGEEALELL-KKHPPDLIIIDLELPDGDGLELLEQIRQIN-PSIPIIVV 77 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEE-EESSHHHHHHHH-HHSTESEEEEESSSSSSBHHHHHHHHHHHT-TTSEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEE-EECCHHHHHHHh-cccCceEEEEEeeecccccccccccccccc-ccccEEEe
Confidence 466899999888888888877663343 233333322110 115699999863 235567777775544 77787877
Q ss_pred eCCCcHHHHHH
Q 026122 179 KGHDPQEEVKN 189 (243)
Q Consensus 179 ~~~~~~~~~~~ 189 (243)
..........+
T Consensus 78 t~~~~~~~~~~ 88 (112)
T PF00072_consen 78 TDEDDSDEVQE 88 (112)
T ss_dssp ESSTSHHHHHH
T ss_pred cCCCCHHHHHH
Confidence 76555444433
No 497
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=75.76 E-value=13 Score=31.71 Aligned_cols=46 Identities=11% Similarity=0.025 Sum_probs=37.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc
Q 026122 75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT 122 (243)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 122 (243)
++..|||--+|+|..++...+. +-+++|+|++++.++.+.+.....
T Consensus 222 ~~diVlDpf~GsGtt~~aa~~~--~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 222 PGDIVLDPFAGSGTTGIAAKNL--GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCEEeecCCCCChHHHHHHHc--CCceEEEecCHHHHHHHHHHHHhh
Confidence 3889999999999887444433 568999999999999988887654
No 498
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=75.69 E-value=2.3 Score=38.44 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=17.7
Q ss_pred cHHHHHHHHccCcccCeEEEEEe
Q 026122 157 EMRILAEYCLPLVRVGGLFVAAK 179 (243)
Q Consensus 157 ~~~~~l~~~~~~LkpgG~l~~~~ 179 (243)
++..+++.=.+-|.|||++++..
T Consensus 215 D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 215 DLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred HHHHHHHHHHHHhccCcEEEEEE
Confidence 35667776677899999998775
No 499
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=75.69 E-value=18 Score=29.51 Aligned_cols=77 Identities=13% Similarity=0.019 Sum_probs=47.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-------CCCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FREQ 146 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-------~~~~ 146 (243)
+.+||=.|+ +|.++..+++.. .+.+|++++.++..........+..+ .++.++.+|+.+...... ..++
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG-GKARARQVDVRDRAALKAAVAAGVEDFGR 83 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 568887776 455666665432 36799999999765554444444333 248888888876321000 0136
Q ss_pred ceEEEEcC
Q 026122 147 YDVAVARA 154 (243)
Q Consensus 147 fD~I~~~~ 154 (243)
+|.|+.++
T Consensus 84 ~d~vi~~a 91 (251)
T PRK12826 84 LDILVANA 91 (251)
T ss_pred CCEEEECC
Confidence 89888764
No 500
>PRK09135 pteridine reductase; Provisional
Probab=75.68 E-value=20 Score=29.20 Aligned_cols=78 Identities=10% Similarity=-0.011 Sum_probs=46.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCC-HHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-------CCC
Q 026122 76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESM-NKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FRE 145 (243)
Q Consensus 76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s-~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-------~~~ 145 (243)
+.+||=.|++ |.++..+++.. .+.+|++++.+ +...+......+...-.++.++.+|+.+...... .-+
T Consensus 6 ~~~vlItGa~-g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (249)
T PRK09135 6 AKVALITGGA-RRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFG 84 (249)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5789999964 56666666543 46899999975 3333333333333322347888888876431100 013
Q ss_pred CceEEEEcC
Q 026122 146 QYDVAVARA 154 (243)
Q Consensus 146 ~fD~I~~~~ 154 (243)
..|.|+.++
T Consensus 85 ~~d~vi~~a 93 (249)
T PRK09135 85 RLDALVNNA 93 (249)
T ss_pred CCCEEEECC
Confidence 579888754
Done!