BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026123
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S1E|A Chain A, Crystal Structure Of Kv Channel-Interacting Protein 1
(Kchip-1)
Length = 224
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 20/100 (20%)
Query: 92 EEAQPEWEDFMNAEDYLNDEEKFNVTDRLVLLFPKIDVNPADGYINEDELTDWNMQQAER 151
+ ++EDF+ A L + V ++L F D+N DGYIN++E+ D + +A
Sbjct: 102 QTGSVKFEDFVTALSIL---LRGTVHEKLRWTFNLYDINK-DGYINKEEMMD--IVKAIY 155
Query: 152 DVMHR---------TQRE-----METHDKNKDGFVSFAEY 177
D+M + T R+ + DKNKDG V+ E+
Sbjct: 156 DMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEF 195
>pdb|2NZ0|A Chain A, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|C Chain C, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 180
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 20/100 (20%)
Query: 92 EEAQPEWEDFMNAEDYLNDEEKFNVTDRLVLLFPKIDVNPADGYINEDELTDWNMQQAER 151
+ ++EDF+ A L + V ++L F D+N DGYIN++E+ D + +A
Sbjct: 66 QTGSVKFEDFVTALSIL---LRGTVHEKLRWTFNLYDINK-DGYINKEEMMD--IVKAIY 119
Query: 152 DVMHR---------TQRE-----METHDKNKDGFVSFAEY 177
D+M + T R+ + DKNKDG V+ E+
Sbjct: 120 DMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEF 159
>pdb|1S6C|A Chain A, Crystal Structure Of The Complex Between Kchip1 And Kv4.2
N1-30
Length = 183
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 20/100 (20%)
Query: 92 EEAQPEWEDFMNAEDYLNDEEKFNVTDRLVLLFPKIDVNPADGYINEDELTDWNMQQAER 151
+ ++EDF+ A L + V ++L F D+N DGYIN++E+ D + +A
Sbjct: 69 QTGSVKFEDFVTALSIL---LRGTVHEKLRWTFNLYDINK-DGYINKEEMMD--IVKAIY 122
Query: 152 DVMHR---------TQRE-----METHDKNKDGFVSFAEY 177
D+M + T R+ + DKNKDG V+ E+
Sbjct: 123 DMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEF 162
>pdb|1NUB|A Chain A, Helix C Deletion Mutant Of Bm-40 Fs-Ec Domain Pair
pdb|1NUB|B Chain B, Helix C Deletion Mutant Of Bm-40 Fs-Ec Domain Pair
Length = 229
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 124 FPKIDVNPADGYINEDELTDWNMQQAERDVMHRTQREMETHDKNKDGFVSFAEYEPPTWV 183
F ++D +P DGY++ EL ++ + H T R ET D + D +++ E+ +
Sbjct: 161 FGQLDQHPIDGYLSHTELAP--LRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGI 218
Query: 184 RNSD 187
+ D
Sbjct: 219 KQKD 222
>pdb|2I2R|E Chain E, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|F Chain F, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|G Chain G, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|H Chain H, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|M Chain M, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|N Chain N, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|O Chain O, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|P Chain P, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 180
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 20/100 (20%)
Query: 92 EEAQPEWEDFMNAEDYLNDEEKFNVTDRLVLLFPKIDVNPADGYINEDELTDWNMQQAER 151
+ ++EDF+ A L + V ++L F D+N DGYIN++E+ D + +A
Sbjct: 66 QTGSVKFEDFVTALSIL---LRGTVHEKLRWTFNLYDINK-DGYINKEEMMD--IVKAIY 119
Query: 152 DVMHR---------TQRE-----METHDKNKDGFVSFAEY 177
D+M T R+ + DKNKDG V+ E+
Sbjct: 120 DMMGAYTYPVLAEDTPRQHVDVFFQKMDKNKDGIVTLDEF 159
>pdb|1BMO|A Chain A, Bm-40, FsEC DOMAIN PAIR
pdb|1BMO|B Chain B, Bm-40, FsEC DOMAIN PAIR
Length = 233
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 124 FPKIDVNPADGYINEDELTDWNMQQAERDVMHRTQREMETHDKNKDGFVSFAEYEPPTWV 183
F ++D +P DGY++ EL ++ + H T R ET D + D +++ E+ +
Sbjct: 165 FGQLDQHPIDGYLSHTELAP--LRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGI 222
Query: 184 RNSD 187
+ D
Sbjct: 223 KQKD 226
>pdb|2V53|A Chain A, Crystal Structure Of A Sparc-Collagen Complex
Length = 230
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 124 FPKIDVNPADGYINEDELTDWNMQQAERDVMHRTQREMETHDKNKDGFVSFAEYEPPTWV 183
F ++D +P DGY++ EL ++ + H T R ET D + D +++ E+ +
Sbjct: 162 FGQLDQHPIDGYLSHTELAP--LRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGI 219
Query: 184 RNSD 187
+ D
Sbjct: 220 KQKD 223
>pdb|2BWM|A Chain A, 1.8a Crystal Structure Of Of Psathyrella Velutina Lectin
In Complex With Methyl
2-Acetamido-1,2-Dideoxy-1-Seleno-Beta- D-Glucopyranoside
pdb|2BWR|A Chain A, Crystal Structure Of Psathyrella Velutina Lectin At 1.5a
Resolution
pdb|2BWR|B Chain B, Crystal Structure Of Psathyrella Velutina Lectin At 1.5a
Resolution
pdb|2C25|A Chain A, 1.8a Crystal Structure Of Psathyrella Velutina Lectin In
Complex With N-Acetylneuraminic Acid
pdb|2C25|B Chain B, 1.8a Crystal Structure Of Psathyrella Velutina Lectin In
Complex With N-Acetylneuraminic Acid
pdb|2C4D|A Chain A, 2.6a Crystal Structure Of Psathyrella Velutina Lectin In
Complex With N-Acetylglucosamine
Length = 401
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 189 NSFGYDMGWWKEEHFN-ASDADGDGLLNLTEFND 221
N+FGY GW + H +D GDGLL++ F +
Sbjct: 158 NNFGYAQGWRLDRHLRFLADVTGDGLLDVVGFGE 191
>pdb|1SRA|A Chain A, Structure Of A Novel Extracellular Ca2+-Binding Module In
Bm-40(Slash)sparc(Slash)osteonectin
Length = 151
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 124 FPKIDVNPADGYINEDELTDWNMQQAERDVMHRTQREMETHDKNKDGFVSFAEYEPPTWV 183
F ++D +P DGY++ EL ++ + H T R ET D + D +++ E+ +
Sbjct: 83 FGQLDQHPIDGYLSHTELA--PLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGI 140
Query: 184 RNSD 187
+ D
Sbjct: 141 KQKD 144
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 120 LVLLFPKIDVNPADGYINEDELTDWNMQQAERDVMHRTQREMET----HDKNKDGFVSFA 175
L LF D N ADGYI+ +EL + E H T E+E+ DKN DG + F
Sbjct: 95 LAELFRIFDRN-ADGYIDAEELAEIFRASGE----HVTDEEIESLMKDGDKNNDGRIDFD 149
Query: 176 EY 177
E+
Sbjct: 150 EF 151
>pdb|2GGZ|A Chain A, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
pdb|2GGZ|B Chain B, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
Length = 211
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 163 THDKNKDGFVSFAEYEPPTWVRNSDNNSFGYDMGWWKEEHFNASDADGDGLLNLTEFNDF 222
T D NKDGFV F E+ + + + W+ F DADG+G ++ E D
Sbjct: 65 TFDTNKDGFVDFLEFIAAVNLIMQEKME--QKLKWY----FKLYDADGNGSIDKNELLDM 118
Query: 223 LHPADTKNPKLIL 235
N + L
Sbjct: 119 FMAVQALNGQQTL 131
>pdb|2OPO|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|C Chain C, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|D Chain D, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
Length = 86
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 123 LFPKIDVNPADGYINEDELTDW--NMQQAERDVMHRTQREMETHDKNKDGFVSFAEY 177
+F + D N DG I+ EL D + D + R E++T + DGF+SF E+
Sbjct: 16 IFKRFDTN-GDGKISSSELGDALKTLGSVTPDEVRRMMAEIDT---DGDGFISFDEF 68
>pdb|3DD4|A Chain A, Structural Basis Of Kchip4a Modulation Of Kv4.3 Slow
Inactivation
Length = 229
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 20/94 (21%)
Query: 98 WEDFMNAEDYLNDEEKFNVTDRLVLLFPKIDVNPADGYINEDELTDWNMQQAERDVMHRT 157
+EDF+ L + V ++L F D+N DGYI ++E+ D + +A D+M +
Sbjct: 121 FEDFIKGLSILL---RGTVQEKLNWAFNLYDINK-DGYITKEEMLD--IMKAIYDMMGKC 174
Query: 158 ----------QREMETH----DKNKDGFVSFAEY 177
++ +ET DKNKDG V+ E+
Sbjct: 175 TYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEF 208
>pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue (1-47) Fragment Of
Troponin I
Length = 159
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 132 ADGYINEDELTDWNMQQAERDVMHRTQREMET----HDKNKDGFVSFAEY 177
ADGYI+ +EL + E H T E+E+ DKN DG + F E+
Sbjct: 106 ADGYIDAEELAEIFRASGE----HVTDEEIESLMKDGDKNNDGRIDFDEF 151
>pdb|2JTZ|A Chain A, Solution Structure And Chemical Shift Assignments Of The
F104-To-5-Flurotryptophan Mutant Of Cardiac Troponin C
Length = 161
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 108 LNDEEKFNVTDRLVLLFPKIDVNPADGYINEDELTDWNMQQAERDVMHRTQREMETHDKN 167
+ D+ K + L LF D N ADGYI+ DEL E + M+ DKN
Sbjct: 85 MKDDSKGKSEEELSDLFRMXDKN-ADGYIDLDELKIMLQATGETITEDDIEELMKDGDKN 143
Query: 168 KDGFVSFAEY 177
DG + + E+
Sbjct: 144 NDGRIDYDEF 153
>pdb|3CTN|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 30
Structures
Length = 76
Score = 28.5 bits (62), Expect = 3.5, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 110 DEEKFNVTDRLVLLFPKIDVNPADGYINEDELTDWNMQQAERDVMHRTQREMETHDKNKD 169
D+ K + L LF D N ADGYI+ +EL E + M+ DKN D
Sbjct: 2 DDSKGKTEEELSDLFRMFDKN-ADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNND 60
Query: 170 GFVSFAEY 177
G + + E+
Sbjct: 61 GRIDYDEF 68
>pdb|2SAS|A Chain A, Structure Of A Sarcoplasmic Calcium-Binding Protein From
Amphioxus Refined At 2.4 Angstroms Resolution
Length = 185
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 165 DKNKDGFVSFAEYEPPTWVRNSDNNSFGYDMGWWKEEH----FNASDADGDGLLNLTEFN 220
D NKD VS+ EY W + D+ W + F D GDG+++L EF
Sbjct: 70 DINKDDVVSWEEY-LAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQ 128
Query: 221 DFL 223
++
Sbjct: 129 NYC 131
>pdb|2KDH|A Chain A, The Solution Structure Of Human Cardiac Troponin C In
Complex With The Green Tea Polyphenol; (-)-
Epigallocatechin-3-Gallate
pdb|2L98|A Chain A, Structure Of Trans-Resveratrol In Complex With The Cardiac
Regulatory Protein Troponin C
Length = 72
Score = 28.1 bits (61), Expect = 5.1, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 118 DRLVLLFPKIDVNPADGYINEDELTDWNMQQAERDVMHRTQREMETHDKNKDGFVSFAEY 177
+ L LF D N ADGYI+ DEL E + M+ DKN DG + + E+
Sbjct: 6 EELSDLFRMFDKN-ADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEF 64
>pdb|1AJ4|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 108 LNDEEKFNVTDRLVLLFPKIDVNPADGYINEDELTDWNMQQAERDVMHRTQREMETHDKN 167
+ D+ K + L LF D N ADGYI+ +EL E + M+ DKN
Sbjct: 85 MKDDSKGKTEEELSDLFRMFDKN-ADGYIDLEELKIMLQATGETITEDDIEELMKDGDKN 143
Query: 168 KDGFVSFAEY 177
DG + + E+
Sbjct: 144 NDGRIDYDEF 153
>pdb|2R2I|A Chain A, Myristoylated Guanylate Cyclase Activating Protein-1 With
Calcium Bound
Length = 198
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 157 TQREMETHDKNKDGFVSFAEYEPPTWVRNSDNNSFGYDMGWWKEEHFNASDADGDGLLNL 216
++ ET D NKDG++ F EY + + W+ F D DG+G ++
Sbjct: 54 VEQMFETFDFNKDGYIDFMEYVAALSL--VLKGKVDQKLRWY----FKLYDVDGNGCIDR 107
Query: 217 TEFNDFLHPADTKN 230
E + + N
Sbjct: 108 GELLNIIKAIRAIN 121
>pdb|1FI5|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin
C Bound To The N Terminal Domain Of Cardiac Troponin I.
pdb|1SBJ|A Chain A, Nmr Structure Of The Mg2+-Loaded C Terminal Domain Of
Cardiac Troponin C Bound To The N Terminal Domain Of
Cardiac Troponin I
pdb|1SCV|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin
C Bound To The N Terminal Domain Of Cardiac Troponin I
Length = 81
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 108 LNDEEKFNVTDRLVLLFPKIDVNPADGYINEDELTDWNMQQAERDVMHRTQREMETHDKN 167
+ D+ K + L LF D N ADGYI+ +EL E + M+ DKN
Sbjct: 5 MKDDSKGKTEEELSDLFRMFDKN-ADGYIDLEELKIMLQATGETITEDDIEELMKDGDKN 63
Query: 168 KDGFVSFAEY 177
DG + + E+
Sbjct: 64 NDGRIDYDEF 73
>pdb|1LA0|A Chain A, Solution Structure Of Calcium Saturated Cardiac Troponin C
In The Troponin C-Troponin I Complex
Length = 161
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 108 LNDEEKFNVTDRLVLLFPKIDVNPADGYINEDELTDWNMQQAERDVMHRTQREMETHDKN 167
+ D+ K + L LF D N ADGYI+ +EL E + M+ DKN
Sbjct: 85 MKDDSKGKTEEELSDLFRMFDKN-ADGYIDLEELKIMLQATGETITEDDIEELMKDGDKN 143
Query: 168 KDGFVSFAEY 177
DG + + E+
Sbjct: 144 NDGRIDYDEF 153
>pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces
Cerevisiae
Length = 497
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 199 KEEHFNASDADGDGLLNLTEFNDFLHPADTKNPKLILWLSK 239
K +HF A++A G ++ T DF+ + K P+ ++ L K
Sbjct: 45 KVDHFLANEAKGKSIIGATSIEDFI--SKLKRPRKVMLLVK 83
>pdb|1JC2|A Chain A, Complex Of The C-Domain Of Troponin C With Residues 1-40
Of Troponin I
Length = 76
Score = 26.9 bits (58), Expect = 9.1, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 132 ADGYINEDELTDWNMQQAERDVMHRTQREMETHDKNKDGFVSFAEY 177
ADG+I+ +EL + E + + M+ DKN DG + F E+
Sbjct: 23 ADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEF 68
>pdb|2JT0|A Chain A, Solution Structure Of F104w Cardiac Troponin C
Length = 161
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 108 LNDEEKFNVTDRLVLLFPKIDVNPADGYINEDELTDWNMQQAERDVMHRTQREMETHDKN 167
+ D+ K + L LF D N ADGYI+ DEL E + M+ DKN
Sbjct: 85 MKDDSKGKSEEELSDLFRMWDKN-ADGYIDLDELKIMLQATGETITEDDIEELMKDGDKN 143
Query: 168 KDGFVSFAEY 177
DG + + E+
Sbjct: 144 NDGRIDYDEF 153
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer
Bepridil At 2.15 A Resolution
pdb|1J1D|A Chain A, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|D Chain D, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|A Chain A, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|D Chain D, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 161
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 108 LNDEEKFNVTDRLVLLFPKIDVNPADGYINEDELTDWNMQQAERDVMHRTQREMETHDKN 167
+ D+ K + L LF D N ADGYI+ +EL E + M+ DKN
Sbjct: 85 MKDDSKGKSEEELSDLFRMFDKN-ADGYIDLEELKIMLQATGETITEDDIEELMKDGDKN 143
Query: 168 KDGFVSFAEY 177
DG + + E+
Sbjct: 144 NDGRIDYDEF 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,512,870
Number of Sequences: 62578
Number of extensions: 380564
Number of successful extensions: 1146
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1106
Number of HSP's gapped (non-prelim): 58
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)