BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026124
         (243 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WFP|A Chain A, Crystal Structure Of Mannose 6-Phosphate Isomerase (Apo
           Form) From Salmonella Typhimurium
          Length = 394

 Score = 29.3 bits (64), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 57  CDICQEKAAFIFCVEDRALFCKDCDEPIHSPG 88
             I Q  AA +FCVE  A+  KD    +  PG
Sbjct: 336 TSIGQHSAAILFCVEGEAVLRKDEQRLVLKPG 367


>pdb|3H1M|A Chain A, Crystal Structure Of Mannose 6-Phosphate Isomerase (Holo;
           Zinc Bound)
 pdb|3H1W|A Chain A, Crystal Structure Of Mannose 6-Phosphate Isomerase Bound
           With Zinc And Yttrium
 pdb|3H1Y|A Chain A, Crystal Structure Of Mannose 6-Phosphate Isomerase From
           Salmonella Typhimurium Bound To Substrate (F6p)and Metal
           Atom (Zn)
          Length = 393

 Score = 29.3 bits (64), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 57  CDICQEKAAFIFCVEDRALFCKDCDEPIHSPG 88
             I Q  AA +FCVE  A+  KD    +  PG
Sbjct: 335 TSIGQHSAAILFCVEGEAVLRKDEQRLVLKPG 366


>pdb|2OOL|A Chain A, Crystal Structure Of The Chromophore-Binding Domain Of An
           Unusual Bacteriophytochrome Rpbphp3 From R. Palustris
 pdb|2OOL|B Chain B, Crystal Structure Of The Chromophore-Binding Domain Of An
           Unusual Bacteriophytochrome Rpbphp3 From R. Palustris
          Length = 337

 Score = 28.9 bits (63), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)

Query: 74  ALFCKDCD-EPIHSPGSLSANHQRFLA--TGIRVALSSSCSKDAERNISEPP 122
           AL   +CD EPIH PG++  +   F+   T +R+A   S S + E  + +PP
Sbjct: 22  ALDLTECDREPIHIPGAIQPHGYLFVVSETDLRIA---SVSANVEDLLRQPP 70


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.132    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,398,156
Number of Sequences: 62578
Number of extensions: 218378
Number of successful extensions: 447
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 445
Number of HSP's gapped (non-prelim): 5
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)