Query 026125
Match_columns 243
No_of_seqs 187 out of 1232
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 04:04:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026125.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026125hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02548 Pantoate_transf: Keto 100.0 5.3E-68 1.2E-72 478.9 14.6 165 77-242 1-165 (261)
2 PLN02424 ketopantoate hydroxym 100.0 7.7E-65 1.7E-69 470.5 20.3 185 58-242 1-185 (332)
3 COG0413 PanB Ketopantoate hydr 100.0 4.8E-65 1.1E-69 458.1 15.8 164 78-242 1-164 (268)
4 KOG2949 Ketopantoate hydroxyme 100.0 1E-59 2.2E-64 419.8 14.2 171 72-242 18-188 (306)
5 TIGR00222 panB 3-methyl-2-oxob 100.0 8.1E-59 1.7E-63 419.9 17.6 163 78-242 1-163 (263)
6 PRK00311 panB 3-methyl-2-oxobu 100.0 1.1E-55 2.4E-60 399.3 17.3 164 78-242 1-164 (264)
7 cd06557 KPHMT-like Ketopantoat 100.0 2.1E-53 4.6E-58 382.6 15.9 161 81-242 1-161 (254)
8 cd06556 ICL_KPHMT Members of t 100.0 3E-42 6.4E-47 307.8 15.6 158 82-242 2-159 (240)
9 cd00377 ICL_PEPM Members of th 99.9 1.9E-23 4.1E-28 186.1 12.1 107 84-194 1-107 (243)
10 PF13714 PEP_mutase: Phosphoen 99.7 1.8E-17 3.8E-22 148.3 12.0 106 84-193 1-107 (238)
11 PRK11320 prpB 2-methylisocitra 99.7 2.7E-17 5.9E-22 151.3 12.5 109 82-194 7-116 (292)
12 TIGR02319 CPEP_Pphonmut carbox 99.7 3.5E-17 7.6E-22 150.8 12.6 109 82-194 6-115 (294)
13 TIGR02317 prpB methylisocitrat 99.7 9.1E-17 2E-21 147.4 13.0 107 83-194 4-111 (285)
14 TIGR02321 Pphn_pyruv_hyd phosp 99.7 1.9E-16 4E-21 145.6 12.4 108 82-194 5-113 (290)
15 COG2513 PrpB PEP phosphonomuta 99.7 7.8E-16 1.7E-20 141.4 11.7 108 82-194 8-116 (289)
16 TIGR02320 PEP_mutase phosphoen 99.6 1.3E-15 2.9E-20 139.6 12.7 104 84-193 1-114 (285)
17 PRK15063 isocitrate lyase; Pro 99.4 4.3E-12 9.2E-17 122.3 11.1 111 79-193 50-183 (428)
18 TIGR01346 isocit_lyase isocitr 98.1 1.8E-05 3.9E-10 78.6 9.3 105 84-193 51-187 (527)
19 TIGR02321 Pphn_pyruv_hyd phosp 97.8 0.00031 6.8E-09 65.1 13.0 123 104-230 95-231 (290)
20 TIGR02320 PEP_mutase phosphoen 97.4 0.003 6.6E-08 58.4 12.7 107 105-215 98-218 (285)
21 cd00377 ICL_PEPM Members of th 97.4 0.002 4.2E-08 57.9 11.1 106 105-214 90-202 (243)
22 TIGR02317 prpB methylisocitrat 97.4 0.0042 9E-08 57.6 13.2 102 105-212 94-201 (285)
23 cd00945 Aldolase_Class_I Class 97.3 0.012 2.6E-07 48.5 13.6 81 103-193 69-151 (201)
24 COG2513 PrpB PEP phosphonomuta 97.2 0.0025 5.5E-08 59.4 10.1 101 103-207 97-200 (289)
25 TIGR02319 CPEP_Pphonmut carbox 97.1 0.01 2.3E-07 55.3 12.9 101 105-211 98-204 (294)
26 PF13714 PEP_mutase: Phosphoen 97.1 0.0032 6.9E-08 56.8 8.8 107 102-215 88-198 (238)
27 cd06556 ICL_KPHMT Members of t 97.0 0.007 1.5E-07 54.7 10.4 87 105-213 95-196 (240)
28 PRK00311 panB 3-methyl-2-oxobu 97.0 0.008 1.7E-07 55.2 10.7 96 104-221 99-208 (264)
29 PRK11320 prpB 2-methylisocitra 97.0 0.016 3.4E-07 54.0 12.7 103 105-213 99-207 (292)
30 COG3010 NanE Putative N-acetyl 96.9 0.017 3.7E-07 52.2 11.7 97 80-193 115-211 (229)
31 KOG1260 Isocitrate lyase [Ener 96.9 0.004 8.6E-08 61.2 8.4 106 84-193 57-185 (492)
32 COG2224 AceA Isocitrate lyase 96.9 0.0025 5.4E-08 62.0 6.8 107 84-193 54-189 (433)
33 cd06557 KPHMT-like Ketopantoat 96.7 0.014 3.1E-07 53.3 9.8 88 105-213 97-198 (254)
34 PF04481 DUF561: Protein of un 96.6 0.02 4.3E-07 52.1 10.3 121 91-222 61-200 (242)
35 cd00408 DHDPS-like Dihydrodipi 96.3 0.038 8.3E-07 49.5 10.1 78 104-194 84-162 (281)
36 TIGR00674 dapA dihydrodipicoli 96.2 0.035 7.6E-07 50.3 9.6 77 104-193 85-162 (285)
37 cd00950 DHDPS Dihydrodipicolin 96.1 0.047 1E-06 49.1 9.5 78 104-194 87-165 (284)
38 PF04131 NanE: Putative N-acet 96.0 0.082 1.8E-06 46.9 10.5 97 78-193 78-174 (192)
39 cd00954 NAL N-Acetylneuraminic 96.0 0.059 1.3E-06 49.0 10.0 79 103-194 87-167 (288)
40 PLN02274 inosine-5'-monophosph 95.9 0.082 1.8E-06 52.6 11.0 101 82-193 278-381 (505)
41 PRK03170 dihydrodipicolinate s 95.9 0.077 1.7E-06 48.1 10.0 78 104-194 88-166 (292)
42 PLN02424 ketopantoate hydroxym 95.8 0.12 2.5E-06 49.4 11.3 124 77-221 76-229 (332)
43 TIGR02313 HpaI-NOT-DapA 2,4-di 95.8 0.088 1.9E-06 48.3 10.3 78 104-194 87-167 (294)
44 cd02810 DHOD_DHPD_FMN Dihydroo 95.7 0.47 1E-05 42.6 14.5 96 91-193 98-198 (289)
45 TIGR00683 nanA N-acetylneurami 95.6 0.095 2E-06 48.0 9.7 78 104-194 88-167 (290)
46 cd04728 ThiG Thiazole synthase 95.6 0.22 4.8E-06 45.8 11.8 93 80-193 112-206 (248)
47 cd02809 alpha_hydroxyacid_oxid 95.6 0.16 3.5E-06 46.6 11.1 97 79-191 159-256 (299)
48 PRK15063 isocitrate lyase; Pro 95.5 0.17 3.6E-06 49.8 11.2 114 104-221 166-317 (428)
49 PF09370 TIM-br_sig_trns: TIM- 95.4 0.074 1.6E-06 49.3 8.2 100 81-189 4-113 (268)
50 PRK00208 thiG thiazole synthas 95.4 0.28 6E-06 45.2 11.8 93 80-193 112-206 (250)
51 cd00381 IMPDH IMPDH: The catal 95.2 0.28 6.1E-06 46.0 11.5 129 82-224 124-260 (325)
52 PLN02892 isocitrate lyase 95.2 0.13 2.8E-06 52.1 9.7 108 83-194 69-207 (570)
53 cd00952 CHBPH_aldolase Trans-o 95.1 0.14 3E-06 47.4 9.0 116 90-219 75-199 (309)
54 PF00701 DHDPS: Dihydrodipicol 95.0 0.056 1.2E-06 48.9 6.1 79 103-194 87-166 (289)
55 PLN02417 dihydrodipicolinate s 95.0 0.24 5.1E-06 45.1 10.0 90 104-212 88-178 (280)
56 PRK05458 guanosine 5'-monophos 94.9 0.31 6.7E-06 46.2 11.1 90 93-192 141-231 (326)
57 PRK04147 N-acetylneuraminate l 94.9 0.14 3.1E-06 46.6 8.5 78 104-194 91-169 (293)
58 TIGR00222 panB 3-methyl-2-oxob 94.9 0.24 5.3E-06 45.7 10.0 122 78-221 57-207 (263)
59 PRK06843 inosine 5-monophospha 94.7 0.5 1.1E-05 46.1 12.1 88 92-190 195-284 (404)
60 TIGR00737 nifR3_yhdG putative 94.7 1.2 2.5E-05 41.2 13.9 126 89-217 60-201 (319)
61 PRK14042 pyruvate carboxylase 94.6 0.66 1.4E-05 47.4 13.2 119 81-215 66-204 (596)
62 cd00945 Aldolase_Class_I Class 94.5 0.53 1.1E-05 38.7 10.2 89 105-214 19-119 (201)
63 TIGR00262 trpA tryptophan synt 94.5 0.54 1.2E-05 42.7 11.1 115 92-212 11-144 (256)
64 PRK06806 fructose-bisphosphate 94.5 0.36 7.8E-06 44.6 10.1 119 89-224 72-218 (281)
65 PRK05567 inosine 5'-monophosph 94.4 0.62 1.3E-05 45.8 12.2 90 91-190 269-359 (486)
66 cd04740 DHOD_1B_like Dihydroor 94.3 1.9 4.2E-05 39.0 14.2 90 93-190 92-185 (296)
67 PRK01130 N-acetylmannosamine-6 94.3 0.74 1.6E-05 40.0 11.1 97 79-191 105-202 (221)
68 TIGR01302 IMP_dehydrog inosine 94.2 0.78 1.7E-05 44.7 12.2 98 83-190 255-355 (450)
69 cd02801 DUS_like_FMN Dihydrour 94.2 1.5 3.3E-05 37.7 12.7 132 88-223 51-199 (231)
70 TIGR00735 hisF imidazoleglycer 94.1 1.4 3E-05 39.4 12.9 90 103-211 159-253 (254)
71 cd02930 DCR_FMN 2,4-dienoyl-Co 94.0 1.2 2.5E-05 41.9 12.6 104 77-193 125-246 (353)
72 PRK02083 imidazole glycerol ph 93.9 2 4.4E-05 38.2 13.4 88 103-211 157-251 (253)
73 cd04729 NanE N-acetylmannosami 93.8 1.9 4.1E-05 37.5 12.8 113 91-224 60-194 (219)
74 cd02932 OYE_YqiM_FMN Old yello 93.8 1.6 3.5E-05 40.6 13.0 127 77-214 142-296 (336)
75 PRK08649 inosine 5-monophospha 93.7 1 2.3E-05 43.2 11.8 103 81-193 176-286 (368)
76 cd00951 KDGDH 5-dehydro-4-deox 93.6 0.79 1.7E-05 41.9 10.4 76 104-194 86-162 (289)
77 PRK11815 tRNA-dihydrouridine s 93.5 0.97 2.1E-05 42.4 11.0 122 94-217 68-214 (333)
78 cd00956 Transaldolase_FSA Tran 93.4 2.1 4.5E-05 37.9 12.5 100 81-206 91-194 (211)
79 cd07944 DRE_TIM_HOA_like 4-hyd 93.4 2 4.4E-05 39.0 12.6 117 81-214 61-189 (266)
80 PTZ00314 inosine-5'-monophosph 93.4 0.97 2.1E-05 44.9 11.3 101 81-191 270-373 (495)
81 cd04729 NanE N-acetylmannosami 93.3 0.8 1.7E-05 39.8 9.6 96 80-191 110-206 (219)
82 PRK12330 oxaloacetate decarbox 93.2 2.1 4.5E-05 43.0 13.4 119 81-215 67-207 (499)
83 TIGR01305 GMP_reduct_1 guanosi 93.0 1.7 3.6E-05 41.9 11.9 89 92-190 150-240 (343)
84 PF05690 ThiG: Thiazole biosyn 93.0 0.98 2.1E-05 41.6 9.9 93 80-191 112-204 (247)
85 cd07937 DRE_TIM_PC_TC_5S Pyruv 92.9 1.3 2.7E-05 40.4 10.6 95 106-214 98-198 (275)
86 COG0329 DapA Dihydrodipicolina 92.9 0.73 1.6E-05 42.7 9.1 87 95-194 78-169 (299)
87 TIGR00742 yjbN tRNA dihydrouri 92.8 1.6 3.4E-05 41.0 11.3 118 95-214 59-201 (318)
88 COG0826 Collagenase and relate 92.7 2.2 4.9E-05 40.7 12.4 109 93-212 7-117 (347)
89 PRK08610 fructose-bisphosphate 92.7 5.7 0.00012 37.1 14.8 146 79-241 4-164 (286)
90 PTZ00314 inosine-5'-monophosph 92.6 1.4 3.1E-05 43.7 11.3 70 100-191 241-310 (495)
91 TIGR03249 KdgD 5-dehydro-4-deo 92.6 1.3 2.9E-05 40.4 10.4 76 104-194 91-167 (296)
92 PRK09875 putative hydrolase; P 92.5 5.2 0.00011 37.2 14.3 137 80-220 36-192 (292)
93 PRK03620 5-dehydro-4-deoxygluc 92.5 1.3 2.8E-05 40.8 10.3 76 104-194 93-169 (303)
94 PRK12656 fructose-6-phosphate 92.5 3.3 7.1E-05 37.3 12.4 102 80-205 94-197 (222)
95 TIGR00612 ispG_gcpE 1-hydroxy- 92.4 1.1 2.3E-05 43.1 9.7 79 107-211 42-124 (346)
96 PLN02274 inosine-5'-monophosph 92.4 2.5 5.4E-05 42.2 12.7 69 100-191 248-317 (505)
97 CHL00162 thiG thiamin biosynth 92.4 1.6 3.4E-05 40.7 10.5 94 80-193 126-220 (267)
98 PRK13523 NADPH dehydrogenase N 92.3 1.8 3.8E-05 40.9 11.0 128 77-217 130-284 (337)
99 TIGR01303 IMP_DH_rel_1 IMP deh 92.3 3 6.5E-05 41.4 13.0 96 100-217 225-337 (475)
100 cd04735 OYE_like_4_FMN Old yel 92.2 1.4 3E-05 41.5 10.2 133 77-222 132-299 (353)
101 cd04734 OYE_like_3_FMN Old yel 92.2 1.8 3.8E-05 40.8 10.9 106 77-193 129-251 (343)
102 TIGR01037 pyrD_sub1_fam dihydr 92.2 7.8 0.00017 35.2 14.8 104 80-191 78-189 (300)
103 cd02803 OYE_like_FMN_family Ol 92.1 2.2 4.7E-05 39.0 11.2 128 77-221 129-295 (327)
104 cd00381 IMPDH IMPDH: The catal 92.1 1.6 3.4E-05 41.0 10.4 96 101-218 95-207 (325)
105 PRK07807 inosine 5-monophospha 92.0 1.9 4.1E-05 42.9 11.3 88 92-190 268-358 (479)
106 TIGR01302 IMP_dehydrog inosine 91.9 1.4 3E-05 43.1 10.1 71 99-191 223-293 (450)
107 TIGR00343 pyridoxal 5'-phospha 91.8 1.2 2.6E-05 41.9 9.1 90 80-196 55-148 (287)
108 TIGR01859 fruc_bis_ald_ fructo 91.8 8.2 0.00018 35.7 14.6 120 84-219 8-139 (282)
109 PRK08185 hypothetical protein; 91.8 5.7 0.00012 37.0 13.5 120 84-221 5-135 (283)
110 cd00953 KDG_aldolase KDG (2-ke 91.7 1.6 3.5E-05 39.7 9.8 90 91-194 66-161 (279)
111 cd04733 OYE_like_2_FMN Old yel 91.7 3.2 6.9E-05 38.7 11.9 104 77-193 137-258 (338)
112 cd04737 LOX_like_FMN L-Lactate 91.6 2 4.4E-05 41.0 10.7 98 78-191 207-305 (351)
113 PRK08649 inosine 5-monophospha 91.6 3.5 7.6E-05 39.7 12.3 76 100-193 142-217 (368)
114 PRK07259 dihydroorotate dehydr 91.5 3.1 6.8E-05 37.9 11.5 88 94-190 95-188 (301)
115 PRK05692 hydroxymethylglutaryl 91.5 2.9 6.3E-05 38.6 11.3 119 91-214 72-205 (287)
116 PRK00278 trpC indole-3-glycero 91.5 1.4 3.1E-05 39.9 9.2 70 102-194 73-143 (260)
117 PRK07998 gatY putative fructos 91.4 9.6 0.00021 35.6 14.7 145 79-241 4-161 (283)
118 TIGR01306 GMP_reduct_2 guanosi 91.4 2.5 5.5E-05 40.1 11.0 84 91-191 136-227 (321)
119 PRK10550 tRNA-dihydrouridine s 91.4 2.8 6E-05 39.2 11.1 127 93-223 65-210 (312)
120 TIGR00167 cbbA ketose-bisphosp 91.4 9.6 0.00021 35.6 14.6 126 79-220 4-143 (288)
121 PRK06801 hypothetical protein; 91.3 8.1 0.00018 36.0 14.0 126 79-222 4-142 (286)
122 TIGR01859 fruc_bis_ald_ fructo 91.3 2.7 5.8E-05 38.8 10.8 115 92-223 75-217 (282)
123 cd00947 TBP_aldolase_IIB Tagat 91.2 10 0.00023 35.2 14.6 140 84-241 5-156 (276)
124 cd03332 LMO_FMN L-Lactate 2-mo 91.1 3.3 7.2E-05 40.2 11.7 97 78-190 239-336 (383)
125 TIGR01304 IMP_DH_rel_2 IMP deh 91.1 3.8 8.3E-05 39.5 12.0 91 90-190 187-283 (369)
126 cd02931 ER_like_FMN Enoate red 91.0 3.7 7.9E-05 39.3 11.8 107 77-194 138-275 (382)
127 PF09370 TIM-br_sig_trns: TIM- 91.0 3.7 8E-05 38.3 11.4 106 80-196 139-251 (268)
128 PRK00366 ispG 4-hydroxy-3-meth 91.0 1.8 3.8E-05 41.9 9.6 80 106-211 49-133 (360)
129 PLN02535 glycolate oxidase 90.9 3.8 8.2E-05 39.5 11.8 98 78-191 209-307 (364)
130 PRK12857 fructose-1,6-bisphosp 90.9 7.8 0.00017 36.1 13.5 123 79-219 4-139 (284)
131 PRK10558 alpha-dehydro-beta-de 90.9 12 0.00026 34.0 14.5 115 83-220 9-126 (256)
132 cd04736 MDH_FMN Mandelate dehy 90.9 2.8 6E-05 40.4 10.8 96 78-191 222-318 (361)
133 PRK10128 2-keto-3-deoxy-L-rham 90.8 10 0.00022 35.0 14.1 115 83-220 8-125 (267)
134 cd08205 RuBisCO_IV_RLP Ribulos 90.8 5.1 0.00011 38.4 12.5 125 78-217 115-256 (367)
135 PF00478 IMPDH: IMP dehydrogen 90.8 2.1 4.5E-05 41.2 9.8 101 96-218 102-221 (352)
136 PF00463 ICL: Isocitrate lyase 90.6 0.75 1.6E-05 46.4 6.9 102 89-194 55-187 (526)
137 TIGR00875 fsa_talC_mipB fructo 90.5 6.4 0.00014 35.1 12.1 100 81-205 91-193 (213)
138 cd04738 DHOD_2_like Dihydrooro 90.4 9.3 0.0002 35.6 13.6 104 81-192 118-237 (327)
139 TIGR01303 IMP_DH_rel_1 IMP deh 90.3 4.2 9.1E-05 40.4 11.9 88 93-191 267-357 (475)
140 PRK01362 putative translaldola 90.3 7.4 0.00016 34.8 12.4 101 81-206 91-194 (214)
141 PRK08195 4-hyroxy-2-oxovalerat 90.3 7.3 0.00016 36.8 12.9 109 90-214 76-195 (337)
142 CHL00200 trpA tryptophan synth 90.1 7.7 0.00017 35.6 12.7 117 92-214 16-150 (263)
143 PRK05567 inosine 5'-monophosph 90.1 3.1 6.8E-05 41.0 10.7 72 100-193 228-299 (486)
144 cd00408 DHDPS-like Dihydrodipi 90.0 5 0.00011 35.9 11.2 95 107-213 26-128 (281)
145 PRK05458 guanosine 5'-monophos 90.0 7.7 0.00017 36.9 12.9 95 100-217 97-210 (326)
146 PRK08185 hypothetical protein; 90.0 5.4 0.00012 37.1 11.7 111 90-217 67-207 (283)
147 TIGR03151 enACPred_II putative 89.9 3.6 7.7E-05 38.3 10.5 88 83-190 101-189 (307)
148 PRK13111 trpA tryptophan synth 89.8 10 0.00022 34.7 13.1 123 84-212 3-146 (258)
149 PRK12331 oxaloacetate decarbox 89.8 4.2 9.2E-05 40.1 11.3 96 105-214 102-203 (448)
150 PRK01130 N-acetylmannosamine-6 89.6 4.2 9E-05 35.3 10.1 84 104-213 28-124 (221)
151 PRK12581 oxaloacetate decarbox 89.5 7.5 0.00016 38.8 12.9 116 81-214 75-212 (468)
152 cd00959 DeoC 2-deoxyribose-5-p 89.5 7.7 0.00017 33.6 11.6 78 105-194 75-154 (203)
153 PRK07709 fructose-bisphosphate 89.4 16 0.00034 34.2 14.2 147 79-241 4-164 (285)
154 TIGR01305 GMP_reduct_1 guanosi 89.4 2.3 4.9E-05 40.9 8.9 70 100-191 107-178 (343)
155 TIGR02660 nifV_homocitr homoci 89.4 8.5 0.00018 36.5 12.7 115 92-214 65-191 (365)
156 cd02922 FCB2_FMN Flavocytochro 89.3 7.5 0.00016 37.0 12.3 100 79-191 200-300 (344)
157 cd01572 QPRTase Quinolinate ph 89.3 5.1 0.00011 36.8 10.8 83 80-190 171-253 (268)
158 TIGR02708 L_lactate_ox L-lacta 89.2 5.2 0.00011 38.7 11.2 98 78-191 214-312 (367)
159 TIGR00736 nifR3_rel_arch TIM-b 89.2 17 0.00036 32.9 14.0 127 83-216 60-199 (231)
160 TIGR01108 oadA oxaloacetate de 89.1 7.5 0.00016 39.6 12.8 117 81-214 61-198 (582)
161 PRK07315 fructose-bisphosphate 89.1 18 0.0004 33.7 14.4 122 79-218 4-140 (293)
162 PRK12653 fructose-6-phosphate 89.1 10 0.00022 34.0 12.3 101 81-206 93-196 (220)
163 PRK11858 aksA trans-homoaconit 89.0 6.6 0.00014 37.5 11.7 117 94-214 70-194 (378)
164 PRK10605 N-ethylmaleimide redu 88.9 6 0.00013 37.6 11.4 137 77-224 147-308 (362)
165 cd07940 DRE_TIM_IPMS 2-isoprop 88.9 3.4 7.4E-05 37.2 9.3 88 105-208 149-245 (268)
166 PF02126 PTE: Phosphotriestera 88.8 3.1 6.8E-05 39.0 9.2 140 79-221 39-197 (308)
167 COG0821 gcpE 1-hydroxy-2-methy 88.7 3.4 7.3E-05 40.0 9.4 60 141-211 63-126 (361)
168 TIGR03239 GarL 2-dehydro-3-deo 88.7 18 0.0004 32.8 14.0 114 84-220 3-119 (249)
169 COG2022 ThiG Uncharacterized e 88.7 3.6 7.8E-05 38.1 9.3 92 80-191 119-211 (262)
170 PRK08318 dihydropyrimidine deh 88.6 7.3 0.00016 37.3 11.9 91 92-189 100-198 (420)
171 PLN02417 dihydrodipicolinate s 88.5 10 0.00022 34.5 12.2 104 108-224 31-148 (280)
172 cd01568 QPRTase_NadC Quinolina 88.5 7.3 0.00016 35.7 11.3 84 81-190 171-254 (269)
173 cd02940 DHPD_FMN Dihydropyrimi 88.5 20 0.00043 32.9 14.5 80 103-189 117-198 (299)
174 PRK06806 fructose-bisphosphate 88.4 16 0.00035 33.8 13.5 125 79-221 4-141 (281)
175 cd00537 MTHFR Methylenetetrahy 88.3 14 0.00031 33.2 12.9 127 90-220 58-198 (274)
176 PF00290 Trp_syntA: Tryptophan 88.3 4 8.6E-05 37.6 9.4 128 84-217 1-149 (259)
177 PRK07807 inosine 5-monophospha 88.3 4.4 9.5E-05 40.3 10.3 68 100-190 227-295 (479)
178 TIGR02311 HpaI 2,4-dihydroxyhe 88.2 5.8 0.00013 35.8 10.3 114 84-220 3-119 (249)
179 cd07939 DRE_TIM_NifV Streptomy 88.1 13 0.00029 33.2 12.5 118 91-214 61-188 (259)
180 PF04131 NanE: Putative N-acet 87.9 4.2 9E-05 36.3 8.9 92 103-216 3-100 (192)
181 cd03174 DRE_TIM_metallolyase D 87.9 4.9 0.00011 35.1 9.4 110 84-209 121-247 (265)
182 cd00958 DhnA Class I fructose- 87.9 7 0.00015 34.1 10.3 66 105-191 149-214 (235)
183 TIGR01858 tag_bisphos_ald clas 87.8 19 0.0004 33.6 13.5 118 84-219 8-137 (282)
184 PRK05718 keto-hydroxyglutarate 87.8 7.3 0.00016 34.7 10.5 93 80-205 56-150 (212)
185 cd02803 OYE_like_FMN_family Ol 87.8 6.3 0.00014 36.0 10.4 79 104-193 233-313 (327)
186 PRK12655 fructose-6-phosphate 87.8 13 0.00028 33.4 12.1 101 81-206 93-196 (220)
187 PRK09250 fructose-bisphosphate 87.7 1.5 3.3E-05 42.2 6.5 83 103-190 221-317 (348)
188 cd01573 modD_like ModD; Quinol 87.7 7.9 0.00017 35.6 11.0 83 80-188 173-255 (272)
189 cd00453 FTBP_aldolase_II Fruct 87.7 19 0.00042 34.7 13.9 131 83-220 4-164 (340)
190 cd04722 TIM_phosphate_binding 87.6 8 0.00017 31.0 9.9 102 102-216 15-122 (200)
191 TIGR03217 4OH_2_O_val_ald 4-hy 87.6 8.2 0.00018 36.5 11.3 108 91-214 76-194 (333)
192 PRK08255 salicylyl-CoA 5-hydro 87.5 6.2 0.00013 41.0 11.3 128 77-217 539-696 (765)
193 PLN02591 tryptophan synthase 87.5 8.7 0.00019 35.1 11.0 105 105-215 22-138 (250)
194 PRK05286 dihydroorotate dehydr 87.4 18 0.0004 34.0 13.5 83 103-193 158-247 (344)
195 TIGR00078 nadC nicotinate-nucl 87.4 8.3 0.00018 35.4 10.9 83 80-190 167-249 (265)
196 cd07943 DRE_TIM_HOA 4-hydroxy- 87.4 11 0.00025 33.7 11.7 116 81-214 65-191 (263)
197 PRK07535 methyltetrahydrofolat 87.4 7.7 0.00017 35.4 10.7 115 80-221 11-132 (261)
198 PRK10415 tRNA-dihydrouridine s 87.4 2.4 5.2E-05 39.6 7.5 73 103-193 153-226 (321)
199 PRK06801 hypothetical protein; 87.2 10 0.00022 35.4 11.5 111 89-216 72-211 (286)
200 cd00950 DHDPS Dihydrodipicolin 87.1 8.5 0.00018 34.6 10.7 94 107-212 29-130 (284)
201 TIGR01949 AroFGH_arch predicte 86.9 5.5 0.00012 35.7 9.4 99 105-218 96-202 (258)
202 PRK01222 N-(5'-phosphoribosyl) 86.8 13 0.00027 32.8 11.4 104 94-217 5-109 (210)
203 PRK09282 pyruvate carboxylase 86.8 5.9 0.00013 40.4 10.5 117 81-214 66-203 (592)
204 cd07943 DRE_TIM_HOA 4-hydroxy- 86.7 1.9 4E-05 38.8 6.2 70 105-190 147-216 (263)
205 cd00953 KDG_aldolase KDG (2-ke 86.7 10 0.00022 34.5 11.1 104 107-225 28-145 (279)
206 cd02809 alpha_hydroxyacid_oxid 86.5 16 0.00036 33.4 12.4 116 78-217 104-236 (299)
207 PRK08227 autoinducer 2 aldolas 86.5 1.7 3.7E-05 40.1 6.0 81 87-191 136-226 (264)
208 cd02933 OYE_like_FMN Old yello 86.5 10 0.00023 35.7 11.3 134 77-221 140-298 (338)
209 PRK14041 oxaloacetate decarbox 86.4 7.1 0.00015 38.9 10.6 94 105-214 101-202 (467)
210 TIGR00683 nanA N-acetylneurami 86.4 11 0.00025 34.5 11.2 106 108-225 30-152 (290)
211 cd00331 IGPS Indole-3-glycerol 86.3 3 6.4E-05 36.1 7.0 66 103-190 35-100 (217)
212 PF00478 IMPDH: IMP dehydrogen 86.1 5.5 0.00012 38.4 9.3 94 80-190 139-239 (352)
213 PRK10415 tRNA-dihydrouridine s 85.6 13 0.00029 34.6 11.5 119 95-217 69-203 (321)
214 PRK10550 tRNA-dihydrouridine s 85.4 3.3 7.2E-05 38.7 7.4 96 92-204 134-237 (312)
215 cd04730 NPD_like 2-Nitropropan 85.3 13 0.00029 32.0 10.6 110 83-209 94-209 (236)
216 TIGR02990 ectoine_eutA ectoine 85.2 7.3 0.00016 35.2 9.2 88 90-213 119-211 (239)
217 PRK02227 hypothetical protein; 85.0 6.8 0.00015 35.9 9.0 79 96-191 4-87 (238)
218 TIGR01037 pyrD_sub1_fam dihydr 85.0 5.8 0.00013 36.0 8.6 81 103-193 173-265 (300)
219 PRK07534 methionine synthase I 84.9 6.1 0.00013 37.4 9.0 123 110-240 56-196 (336)
220 TIGR03572 WbuZ glycosyl amidat 84.9 15 0.00034 31.9 11.0 70 102-190 156-226 (232)
221 cd00954 NAL N-Acetylneuraminic 84.9 12 0.00025 34.1 10.5 105 108-224 30-151 (288)
222 PRK07107 inosine 5-monophospha 84.8 10 0.00022 38.0 10.8 87 94-190 287-380 (502)
223 cd07944 DRE_TIM_HOA_like 4-hyd 84.7 2.9 6.2E-05 38.1 6.5 72 104-190 143-214 (266)
224 PRK09195 gatY tagatose-bisphos 84.7 29 0.00063 32.4 13.2 145 79-241 4-163 (284)
225 PRK09197 fructose-bisphosphate 84.5 30 0.00066 33.4 13.5 135 84-220 13-171 (350)
226 PRK11197 lldD L-lactate dehydr 84.4 12 0.00025 36.5 10.7 97 78-190 231-328 (381)
227 TIGR00737 nifR3_yhdG putative 84.4 5.1 0.00011 37.0 8.0 73 103-193 151-224 (319)
228 PRK14040 oxaloacetate decarbox 84.3 16 0.00035 37.3 12.2 116 81-214 67-204 (593)
229 TIGR00126 deoC deoxyribose-pho 84.0 20 0.00042 32.0 11.3 79 105-193 76-154 (211)
230 TIGR00874 talAB transaldolase. 84.0 30 0.00066 32.9 13.1 112 81-215 138-261 (317)
231 cd00952 CHBPH_aldolase Trans-o 83.9 11 0.00024 34.9 10.1 94 108-213 38-140 (309)
232 PRK13753 dihydropteroate synth 83.8 17 0.00036 34.0 11.2 92 107-215 33-127 (279)
233 COG0352 ThiE Thiamine monophos 83.8 13 0.00029 33.2 10.2 94 79-190 92-185 (211)
234 PRK11840 bifunctional sulfur c 83.6 15 0.00032 35.3 10.9 94 80-193 186-280 (326)
235 PRK05096 guanosine 5'-monophos 83.6 2.6 5.5E-05 40.7 5.8 96 100-217 108-222 (346)
236 TIGR01769 GGGP geranylgeranylg 83.5 2.4 5.3E-05 37.7 5.3 43 104-157 16-58 (205)
237 PRK12738 kbaY tagatose-bisphos 83.5 34 0.00074 32.0 13.1 124 79-220 4-140 (286)
238 cd07941 DRE_TIM_LeuA3 Desulfob 83.3 7 0.00015 35.5 8.3 69 105-189 157-225 (273)
239 cd07938 DRE_TIM_HMGL 3-hydroxy 83.2 20 0.00043 32.8 11.3 115 91-214 66-199 (274)
240 TIGR00736 nifR3_rel_arch TIM-b 83.1 6.8 0.00015 35.4 8.1 85 87-191 130-220 (231)
241 cd04730 NPD_like 2-Nitropropan 83.1 19 0.00042 31.0 10.7 96 99-214 13-108 (236)
242 PRK07259 dihydroorotate dehydr 83.0 30 0.00065 31.5 12.4 111 102-218 26-167 (301)
243 PRK05269 transaldolase B; Prov 82.7 34 0.00073 32.5 12.9 116 81-216 140-264 (318)
244 cd04724 Tryptophan_synthase_al 82.4 13 0.00029 33.2 9.7 101 105-211 20-132 (242)
245 PRK01033 imidazole glycerol ph 82.4 32 0.0007 31.0 12.2 90 103-211 156-258 (258)
246 TIGR03217 4OH_2_O_val_ald 4-hy 82.3 3.3 7.2E-05 39.1 6.1 72 103-189 147-218 (333)
247 PF00682 HMGL-like: HMGL-like 82.3 2.1 4.6E-05 37.2 4.5 71 104-190 142-212 (237)
248 PRK07695 transcriptional regul 82.3 26 0.00056 30.0 11.1 95 80-193 85-179 (201)
249 cd02931 ER_like_FMN Enoate red 82.3 12 0.00026 35.8 9.9 94 103-206 256-350 (382)
250 TIGR01520 FruBisAldo_II_A fruc 82.3 50 0.0011 32.1 14.0 136 85-221 20-179 (357)
251 cd07948 DRE_TIM_HCS Saccharomy 82.2 24 0.00053 32.1 11.4 115 92-214 64-190 (262)
252 cd04740 DHOD_1B_like Dihydroor 82.1 37 0.00079 30.7 12.5 75 136-216 73-162 (296)
253 PRK06498 isocitrate lyase; Pro 82.1 2.2 4.7E-05 43.1 4.9 112 80-194 49-216 (531)
254 cd02911 arch_FMN Archeal FMN-b 82.0 18 0.00039 32.4 10.3 125 84-217 65-200 (233)
255 cd04727 pdxS PdxS is a subunit 82.0 28 0.0006 32.9 11.8 89 92-193 112-227 (283)
256 PRK05718 keto-hydroxyglutarate 81.9 37 0.00079 30.3 12.2 110 82-221 6-120 (212)
257 PRK04180 pyridoxal biosynthesi 81.9 6.6 0.00014 37.1 7.7 114 84-219 12-132 (293)
258 COG3836 HpcH 2,4-dihydroxyhept 81.9 18 0.0004 33.6 10.4 101 83-206 7-109 (255)
259 COG0159 TrpA Tryptophan syntha 81.9 36 0.00079 31.7 12.5 122 84-211 8-150 (265)
260 TIGR03151 enACPred_II putative 81.8 32 0.00069 32.1 12.2 110 85-216 5-117 (307)
261 cd07939 DRE_TIM_NifV Streptomy 81.7 3.5 7.7E-05 36.9 5.8 89 105-210 145-241 (259)
262 PRK07455 keto-hydroxyglutarate 81.7 16 0.00035 31.5 9.6 73 94-191 107-180 (187)
263 cd03315 MLE_like Muconate lact 81.7 14 0.00031 32.9 9.5 91 99-214 139-237 (265)
264 PRK08645 bifunctional homocyst 81.7 4.8 0.0001 40.9 7.3 124 110-240 54-191 (612)
265 cd00951 KDGDH 5-dehydro-4-deox 81.6 14 0.00031 33.7 9.8 95 107-214 29-131 (289)
266 PRK07084 fructose-bisphosphate 81.4 51 0.0011 31.5 13.8 149 78-241 9-172 (321)
267 PRK03620 5-dehydro-4-deoxygluc 81.4 14 0.00029 34.1 9.6 107 106-225 35-153 (303)
268 cd07940 DRE_TIM_IPMS 2-isoprop 81.3 28 0.00061 31.3 11.4 119 90-214 60-195 (268)
269 TIGR02151 IPP_isom_2 isopenten 81.1 23 0.0005 33.2 11.2 95 83-190 170-282 (333)
270 cd04726 KGPDC_HPS 3-Keto-L-gul 81.0 27 0.00057 29.4 10.6 87 86-191 98-186 (202)
271 cd07937 DRE_TIM_PC_TC_5S Pyruv 81.0 15 0.00032 33.5 9.6 110 103-218 25-141 (275)
272 cd03319 L-Ala-DL-Glu_epimerase 80.8 10 0.00022 34.7 8.5 64 142-214 218-285 (316)
273 PRK05096 guanosine 5'-monophos 80.7 21 0.00046 34.5 10.8 99 81-190 142-241 (346)
274 TIGR03128 RuMP_HxlA 3-hexulose 80.7 8.6 0.00019 32.7 7.5 84 110-213 22-107 (206)
275 cd00958 DhnA Class I fructose- 80.6 23 0.00049 30.9 10.3 94 105-212 82-183 (235)
276 cd07945 DRE_TIM_CMS Leptospira 80.6 17 0.00037 33.4 9.9 91 105-211 153-251 (280)
277 PRK08195 4-hyroxy-2-oxovalerat 80.5 4.4 9.6E-05 38.3 6.2 93 103-210 148-247 (337)
278 PRK07226 fructose-bisphosphate 80.5 26 0.00057 31.6 11.0 103 105-220 99-208 (267)
279 cd06320 PBP1_allose_binding Pe 80.5 14 0.0003 31.6 8.8 76 135-214 12-88 (275)
280 PRK06843 inosine 5-monophospha 80.5 18 0.0004 35.5 10.5 66 102-190 155-221 (404)
281 TIGR02090 LEU1_arch isopropylm 80.4 13 0.00028 35.4 9.3 114 91-214 63-190 (363)
282 COG0042 tRNA-dihydrouridine sy 80.2 9.3 0.0002 35.9 8.2 99 84-199 127-236 (323)
283 TIGR00674 dapA dihydrodipicoli 80.2 28 0.0006 31.6 11.1 93 108-212 28-128 (285)
284 PRK05437 isopentenyl pyrophosp 80.1 27 0.00059 33.2 11.4 95 83-191 177-290 (352)
285 TIGR03849 arch_ComA phosphosul 80.0 23 0.0005 32.5 10.4 86 107-206 79-181 (237)
286 PRK07428 nicotinate-nucleotide 79.9 28 0.00061 32.5 11.2 76 92-191 196-271 (288)
287 COG0646 MetH Methionine syntha 79.8 6.2 0.00013 37.6 6.8 154 78-239 31-213 (311)
288 PF00682 HMGL-like: HMGL-like 79.8 22 0.00048 30.9 10.0 120 80-206 45-177 (237)
289 PRK07315 fructose-bisphosphate 79.7 26 0.00057 32.6 10.9 112 93-223 79-219 (293)
290 cd02811 IDI-2_FMN Isopentenyl- 79.6 35 0.00075 32.0 11.8 95 82-191 168-284 (326)
291 PRK12737 gatY tagatose-bisphos 79.6 54 0.0012 30.6 13.4 123 79-219 4-139 (284)
292 PF03060 NMO: Nitronate monoox 79.4 17 0.00036 34.0 9.6 104 84-207 129-241 (330)
293 PF00701 DHDPS: Dihydrodipicol 79.1 15 0.00032 33.2 8.9 96 106-213 29-132 (289)
294 cd00452 KDPG_aldolase KDPG and 79.1 39 0.00085 28.8 11.1 102 92-224 56-159 (190)
295 PRK05835 fructose-bisphosphate 79.0 60 0.0013 30.8 15.0 125 79-220 3-140 (307)
296 cd04727 pdxS PdxS is a subunit 78.8 21 0.00047 33.6 10.0 114 84-216 3-120 (283)
297 TIGR01496 DHPS dihydropteroate 78.4 7.7 0.00017 35.2 6.9 21 198-218 85-105 (257)
298 cd02940 DHPD_FMN Dihydropyrimi 78.4 18 0.00039 33.2 9.3 90 91-193 168-283 (299)
299 PLN02979 glycolate oxidase 78.3 35 0.00076 33.2 11.6 98 77-190 208-306 (366)
300 PRK12999 pyruvate carboxylase; 78.1 32 0.0007 37.9 12.5 119 81-214 597-740 (1146)
301 cd01536 PBP1_ABC_sugar_binding 77.9 19 0.00042 30.0 8.7 74 135-214 12-86 (267)
302 PRK06852 aldolase; Validated 77.8 12 0.00026 35.3 8.2 72 103-190 192-264 (304)
303 PRK07028 bifunctional hexulose 77.8 19 0.00041 34.7 9.7 88 106-213 23-112 (430)
304 PLN02746 hydroxymethylglutaryl 77.7 26 0.00056 33.6 10.5 71 104-190 202-272 (347)
305 PRK13958 N-(5'-phosphoribosyl) 77.7 47 0.001 29.2 11.4 99 94-212 3-103 (207)
306 PTZ00411 transaldolase-like pr 77.6 68 0.0015 30.8 13.2 115 81-216 150-275 (333)
307 PF03102 NeuB: NeuB family; I 77.6 23 0.0005 32.2 9.6 83 83-187 60-142 (241)
308 PLN02363 phosphoribosylanthran 77.4 42 0.00091 30.8 11.4 100 93-213 48-148 (256)
309 PRK12376 putative translaldola 77.3 58 0.0013 29.7 12.7 101 81-206 102-208 (236)
310 PF01207 Dus: Dihydrouridine s 77.1 6.3 0.00014 36.5 6.1 125 91-218 54-193 (309)
311 PRK07998 gatY putative fructos 77.1 21 0.00046 33.4 9.4 108 90-214 73-205 (283)
312 cd06267 PBP1_LacI_sugar_bindin 77.0 28 0.00061 28.8 9.4 76 137-219 14-89 (264)
313 TIGR01306 GMP_reduct_2 guanosi 76.8 29 0.00062 33.1 10.4 68 101-191 95-165 (321)
314 PRK07226 fructose-bisphosphate 76.8 30 0.00066 31.2 10.2 81 89-190 137-230 (267)
315 TIGR01949 AroFGH_arch predicte 76.8 13 0.00028 33.3 7.8 64 105-190 162-226 (258)
316 PRK07565 dihydroorotate dehydr 76.7 21 0.00045 33.3 9.4 93 104-206 182-288 (334)
317 cd04734 OYE_like_3_FMN Old yel 76.7 25 0.00054 33.1 9.9 93 103-205 232-329 (343)
318 PF04476 DUF556: Protein of un 76.6 19 0.00041 33.1 8.7 83 95-190 3-86 (235)
319 PRK14041 oxaloacetate decarbox 76.4 5.3 0.00012 39.7 5.6 90 103-209 157-253 (467)
320 cd04743 NPD_PKS 2-Nitropropane 76.4 35 0.00076 32.5 10.9 99 97-216 11-111 (320)
321 cd01545 PBP1_SalR Ligand-bindi 76.2 24 0.00052 29.8 8.9 78 131-213 8-85 (270)
322 PRK04180 pyridoxal biosynthesi 76.1 14 0.00031 34.9 8.1 90 92-193 121-236 (293)
323 PRK09240 thiH thiamine biosynt 76.1 13 0.00028 35.4 8.0 147 79-241 161-351 (371)
324 PF13407 Peripla_BP_4: Peripla 76.1 15 0.00032 31.2 7.6 72 137-213 13-85 (257)
325 PRK08072 nicotinate-nucleotide 76.0 36 0.00078 31.6 10.6 83 80-190 177-259 (277)
326 PLN02321 2-isopropylmalate syn 76.0 21 0.00046 36.9 9.9 89 88-190 220-318 (632)
327 cd07945 DRE_TIM_CMS Leptospira 76.0 22 0.00047 32.7 9.2 102 104-214 79-197 (280)
328 PRK12309 transaldolase/EF-hand 75.9 67 0.0014 31.4 12.8 112 81-215 144-267 (391)
329 TIGR01521 FruBisAldo_II_B fruc 75.9 79 0.0017 30.6 15.0 121 84-221 8-147 (347)
330 PRK15108 biotin synthase; Prov 75.7 31 0.00067 32.6 10.3 92 105-214 85-190 (345)
331 cd00564 TMP_TenI Thiamine mono 75.5 43 0.00093 27.3 10.5 96 80-193 84-180 (196)
332 COG0800 Eda 2-keto-3-deoxy-6-p 75.5 63 0.0014 29.3 11.7 102 84-213 6-111 (211)
333 PRK08227 autoinducer 2 aldolas 75.4 27 0.00058 32.4 9.6 90 108-212 103-196 (264)
334 cd03174 DRE_TIM_metallolyase D 75.3 55 0.0012 28.5 13.7 130 81-215 54-197 (265)
335 COG0329 DapA Dihydrodipicolina 75.3 30 0.00065 32.1 10.0 75 105-191 31-106 (299)
336 PRK09485 mmuM homocysteine met 75.2 19 0.00041 33.3 8.6 81 154-240 108-207 (304)
337 PF04476 DUF556: Protein of un 75.0 32 0.00069 31.7 9.8 103 78-192 39-152 (235)
338 cd06294 PBP1_ycjW_transcriptio 75.0 19 0.00041 30.5 8.0 73 135-214 17-89 (270)
339 PRK10499 PTS system N,N'-diace 75.0 25 0.00053 27.9 8.1 75 89-185 29-105 (106)
340 PLN02493 probable peroxisomal 74.9 49 0.0011 32.1 11.6 97 78-190 210-307 (367)
341 TIGR00677 fadh2_euk methylenet 74.9 70 0.0015 29.5 13.4 124 91-220 60-199 (281)
342 COG1830 FbaB DhnA-type fructos 74.9 7.3 0.00016 36.3 5.8 63 104-190 171-236 (265)
343 TIGR01108 oadA oxaloacetate de 74.8 13 0.00028 38.0 8.0 90 104-210 154-250 (582)
344 PRK08508 biotin synthase; Prov 74.8 37 0.00079 31.0 10.3 91 107-214 51-156 (279)
345 cd06282 PBP1_GntR_like_2 Ligan 74.7 31 0.00067 29.0 9.2 73 136-214 13-85 (266)
346 cd06312 PBP1_ABC_sugar_binding 74.7 30 0.00065 29.6 9.3 75 134-213 12-87 (271)
347 cd06273 PBP1_GntR_like_1 This 74.6 32 0.0007 29.1 9.3 77 131-214 8-84 (268)
348 PF04551 GcpE: GcpE protein; 74.6 12 0.00026 36.4 7.2 50 150-211 72-134 (359)
349 PRK07709 fructose-bisphosphate 74.4 31 0.00067 32.2 9.8 106 93-215 79-210 (285)
350 cd06324 PBP1_ABC_sugar_binding 74.3 32 0.0007 30.5 9.6 73 136-214 14-88 (305)
351 PRK05437 isopentenyl pyrophosp 74.2 25 0.00054 33.4 9.4 100 102-214 80-192 (352)
352 cd00405 PRAI Phosphoribosylant 74.2 55 0.0012 28.0 10.9 95 98-212 5-100 (203)
353 PRK13585 1-(5-phosphoribosyl)- 74.1 54 0.0012 28.6 10.8 70 102-190 152-221 (241)
354 TIGR00284 dihydropteroate synt 74.1 43 0.00093 33.8 11.3 85 105-213 171-256 (499)
355 PRK11613 folP dihydropteroate 74.0 51 0.0011 30.7 11.1 100 105-222 44-148 (282)
356 TIGR02313 HpaI-NOT-DapA 2,4-di 73.9 22 0.00047 32.7 8.6 94 107-212 29-131 (294)
357 TIGR01927 menC_gamma/gm+ o-suc 73.9 50 0.0011 30.5 11.0 93 104-214 116-212 (307)
358 cd02932 OYE_YqiM_FMN Old yello 73.9 30 0.00066 32.1 9.7 73 104-191 246-320 (336)
359 COG2185 Sbm Methylmalonyl-CoA 73.9 34 0.00074 29.2 9.1 86 103-210 31-117 (143)
360 COG0685 MetF 5,10-methylenetet 73.8 23 0.00051 32.8 8.8 135 78-220 65-213 (291)
361 PRK05848 nicotinate-nucleotide 73.7 53 0.0012 30.5 11.1 75 92-190 182-256 (273)
362 cd02812 PcrB_like PcrB_like pr 73.7 6.4 0.00014 35.4 5.0 40 101-149 14-53 (219)
363 PF03932 CutC: CutC family; I 73.7 31 0.00068 30.7 9.2 109 95-215 3-121 (201)
364 cd04722 TIM_phosphate_binding 73.6 44 0.00096 26.6 10.6 95 105-219 77-181 (200)
365 cd04733 OYE_like_2_FMN Old yel 73.5 52 0.0011 30.7 11.1 81 103-193 240-324 (338)
366 TIGR02134 transald_staph trans 73.5 73 0.0016 29.1 12.6 102 80-206 101-208 (236)
367 PRK09140 2-dehydro-3-deoxy-6-p 73.5 60 0.0013 28.5 11.0 112 81-223 52-166 (206)
368 PRK05692 hydroxymethylglutaryl 73.4 7.1 0.00015 36.0 5.3 91 104-210 160-263 (287)
369 COG1856 Uncharacterized homolo 73.3 24 0.00051 32.9 8.5 98 108-223 51-166 (275)
370 TIGR01163 rpe ribulose-phospha 73.3 44 0.00095 28.1 9.8 91 103-211 15-107 (210)
371 PLN02858 fructose-bisphosphate 73.2 1.1E+02 0.0025 34.4 15.3 148 77-242 1098-1259(1378)
372 COG1646 Predicted phosphate-bi 73.0 7.8 0.00017 35.7 5.4 45 102-157 31-75 (240)
373 PRK00043 thiE thiamine-phospha 73.0 51 0.0011 27.7 10.1 96 81-193 94-190 (212)
374 cd02801 DUS_like_FMN Dihydrour 73.0 31 0.00067 29.6 8.9 73 104-193 143-215 (231)
375 PF02219 MTHFR: Methylenetetra 72.9 38 0.00083 30.9 9.9 126 90-219 70-209 (287)
376 cd06299 PBP1_LacI_like_13 Liga 72.9 41 0.00088 28.4 9.5 74 134-214 11-84 (265)
377 PF01136 Peptidase_U32: Peptid 72.7 39 0.00085 29.2 9.5 72 107-207 10-81 (233)
378 cd06281 PBP1_LacI_like_5 Ligan 72.5 31 0.00068 29.4 8.8 75 134-214 11-85 (269)
379 cd04731 HisF The cyclase subun 72.5 52 0.0011 28.8 10.4 69 103-190 153-222 (243)
380 PRK00278 trpC indole-3-glycero 72.4 38 0.00083 30.7 9.8 92 79-191 147-240 (260)
381 PRK12581 oxaloacetate decarbox 72.3 32 0.00069 34.5 9.9 112 102-219 38-156 (468)
382 cd04747 OYE_like_5_FMN Old yel 72.2 43 0.00094 32.1 10.5 130 77-217 132-289 (361)
383 COG0646 MetH Methionine syntha 72.2 35 0.00076 32.6 9.6 67 137-206 232-307 (311)
384 PRK09140 2-dehydro-3-deoxy-6-p 72.2 35 0.00075 30.1 9.2 78 89-192 101-180 (206)
385 cd06300 PBP1_ABC_sugar_binding 72.1 34 0.00074 29.1 9.0 76 134-215 11-92 (272)
386 cd03329 MR_like_4 Mandelate ra 72.0 86 0.0019 29.5 12.3 74 134-217 223-301 (368)
387 PF02548 Pantoate_transf: Keto 72.0 22 0.00047 33.1 8.1 114 77-213 57-202 (261)
388 PRK04147 N-acetylneuraminate l 71.9 32 0.00069 31.3 9.2 92 111-214 37-136 (293)
389 PRK05742 nicotinate-nucleotide 71.5 63 0.0014 30.1 11.1 81 81-190 180-260 (277)
390 TIGR01182 eda Entner-Doudoroff 71.3 37 0.00079 30.2 9.1 104 80-219 49-153 (204)
391 cd06289 PBP1_MalI_like Ligand- 71.3 42 0.00091 28.2 9.2 74 135-214 12-85 (268)
392 cd00739 DHPS DHPS subgroup of 71.3 35 0.00075 31.1 9.2 99 105-221 30-134 (257)
393 cd06306 PBP1_TorT-like TorT-li 71.3 30 0.00066 29.8 8.5 79 134-216 11-89 (268)
394 TIGR00676 fadh2 5,10-methylene 71.1 63 0.0014 29.4 10.9 123 90-219 58-194 (272)
395 TIGR03569 NeuB_NnaB N-acetylne 71.1 6.9 0.00015 37.2 4.8 37 154-192 1-37 (329)
396 PRK09282 pyruvate carboxylase 71.1 20 0.00042 36.7 8.3 71 103-190 158-228 (592)
397 PRK02615 thiamine-phosphate py 71.0 65 0.0014 30.9 11.3 96 80-193 229-324 (347)
398 PF02581 TMP-TENI: Thiamine mo 70.9 42 0.00091 28.3 9.1 93 79-190 83-176 (180)
399 PRK12595 bifunctional 3-deoxy- 70.8 1E+02 0.0022 29.6 13.8 89 81-191 171-260 (360)
400 PRK12737 gatY tagatose-bisphos 70.8 49 0.0011 30.9 10.2 108 90-214 73-208 (284)
401 PRK12858 tagatose 1,6-diphosph 70.8 30 0.00066 33.0 9.0 86 100-191 107-206 (340)
402 PRK00230 orotidine 5'-phosphat 70.7 68 0.0015 28.5 10.8 94 106-216 74-178 (230)
403 PRK13399 fructose-1,6-bisphosp 70.5 1.1E+02 0.0023 29.7 14.5 123 79-219 4-147 (347)
404 cd06285 PBP1_LacI_like_7 Ligan 70.4 51 0.0011 28.0 9.6 79 130-215 7-85 (265)
405 TIGR03128 RuMP_HxlA 3-hexulose 70.4 66 0.0014 27.3 10.3 89 81-191 91-186 (206)
406 PRK05105 O-succinylbenzoate sy 70.4 35 0.00077 31.7 9.2 77 136-216 140-217 (322)
407 PRK13125 trpA tryptophan synth 70.4 59 0.0013 29.0 10.3 112 93-212 6-133 (244)
408 cd06322 PBP1_ABC_sugar_binding 70.3 36 0.00078 28.9 8.6 79 130-214 7-86 (267)
409 TIGR00343 pyridoxal 5'-phospha 70.2 43 0.00093 31.7 9.7 90 92-193 114-230 (287)
410 cd01537 PBP1_Repressors_Sugar_ 70.1 53 0.0011 27.0 9.4 79 136-220 13-91 (264)
411 cd01822 Lysophospholipase_L1_l 69.8 55 0.0012 26.1 10.7 91 114-212 2-105 (177)
412 cd06310 PBP1_ABC_sugar_binding 69.7 43 0.00094 28.5 9.0 74 137-214 14-88 (273)
413 PRK07114 keto-hydroxyglutarate 69.6 40 0.00087 30.4 9.1 109 80-219 56-169 (222)
414 cd06317 PBP1_ABC_sugar_binding 69.5 41 0.00089 28.5 8.8 73 136-214 14-87 (275)
415 PRK03170 dihydrodipicolinate s 69.5 34 0.00073 31.0 8.7 94 107-212 30-131 (292)
416 cd00957 Transaldolase_TalAB Tr 69.4 1.1E+02 0.0023 29.2 13.1 113 81-216 138-262 (313)
417 PRK14040 oxaloacetate decarbox 69.4 43 0.00093 34.4 10.3 110 103-218 31-147 (593)
418 COG0119 LeuA Isopropylmalate/h 69.4 13 0.00028 36.4 6.4 72 104-190 151-222 (409)
419 TIGR03586 PseI pseudaminic aci 69.3 41 0.00088 32.0 9.5 87 84-192 82-169 (327)
420 PLN02746 hydroxymethylglutaryl 69.3 1E+02 0.0022 29.7 12.2 112 91-207 114-238 (347)
421 TIGR03700 mena_SCO4494 putativ 69.3 25 0.00054 33.1 8.0 99 105-217 88-212 (351)
422 PF07302 AroM: AroM protein; 69.2 44 0.00096 30.3 9.3 76 132-212 129-206 (221)
423 cd07938 DRE_TIM_HMGL 3-hydroxy 69.2 29 0.00063 31.7 8.3 70 104-189 154-223 (274)
424 cd06337 PBP1_ABC_ligand_bindin 69.2 12 0.00027 34.1 5.9 58 152-214 42-99 (357)
425 cd01538 PBP1_ABC_xylose_bindin 69.1 39 0.00084 29.5 8.8 78 136-219 13-91 (288)
426 cd07948 DRE_TIM_HCS Saccharomy 69.1 12 0.00027 34.0 5.8 69 105-190 147-215 (262)
427 cd04739 DHOD_like Dihydroorota 69.0 56 0.0012 30.5 10.3 93 104-206 180-286 (325)
428 cd04738 DHOD_2_like Dihydrooro 68.9 14 0.00031 34.4 6.3 77 103-191 220-309 (327)
429 cd02810 DHOD_DHPD_FMN Dihydroo 68.8 88 0.0019 28.0 12.6 75 136-216 81-170 (289)
430 cd08210 RLP_RrRLP Ribulose bis 68.7 64 0.0014 31.1 10.8 123 78-214 111-249 (364)
431 cd07947 DRE_TIM_Re_CS Clostrid 68.7 35 0.00075 31.5 8.7 74 110-190 160-234 (279)
432 PF04909 Amidohydro_2: Amidohy 68.7 21 0.00046 30.3 6.9 61 152-216 69-138 (273)
433 PRK06252 methylcobalamin:coenz 68.7 32 0.0007 31.6 8.6 90 108-215 189-282 (339)
434 PRK04169 geranylgeranylglycery 68.6 10 0.00022 34.4 5.2 40 106-157 26-65 (232)
435 PRK06512 thiamine-phosphate py 68.6 47 0.001 29.6 9.3 95 80-193 99-194 (221)
436 PRK09195 gatY tagatose-bisphos 68.6 60 0.0013 30.3 10.3 108 90-214 73-208 (284)
437 cd06309 PBP1_YtfQ_like Peripla 68.4 45 0.00097 28.5 8.9 74 136-215 13-87 (273)
438 cd00947 TBP_aldolase_IIB Tagat 68.4 43 0.00093 31.1 9.3 107 91-214 69-202 (276)
439 PRK07360 FO synthase subunit 2 68.3 26 0.00056 33.3 8.0 93 105-212 100-218 (371)
440 cd06356 PBP1_Amide_Urea_BP_lik 68.2 71 0.0015 28.8 10.6 135 79-215 54-221 (334)
441 cd01574 PBP1_LacI Ligand-bindi 68.1 37 0.00079 28.7 8.2 78 134-218 11-88 (264)
442 PRK11858 aksA trans-homoaconit 68.0 21 0.00044 34.2 7.3 86 87-190 125-219 (378)
443 PRK05835 fructose-bisphosphate 68.0 63 0.0014 30.7 10.4 108 92-216 75-212 (307)
444 PRK12331 oxaloacetate decarbox 67.9 35 0.00076 33.8 9.0 112 102-219 29-147 (448)
445 TIGR03249 KdgD 5-dehydro-4-deo 67.7 46 0.00099 30.4 9.3 105 108-225 35-151 (296)
446 TIGR01361 DAHP_synth_Bsub phos 67.7 99 0.0021 28.2 12.8 91 80-192 77-168 (260)
447 PF00809 Pterin_bind: Pterin b 67.6 51 0.0011 28.8 9.2 98 105-219 25-128 (210)
448 cd06305 PBP1_methylthioribose_ 67.1 47 0.001 28.2 8.7 74 136-215 13-87 (273)
449 cd06318 PBP1_ABC_sugar_binding 66.9 47 0.001 28.4 8.8 75 134-214 11-86 (282)
450 PF02574 S-methyl_trans: Homoc 66.9 31 0.00068 31.5 8.1 100 110-213 52-180 (305)
451 PRK09196 fructose-1,6-bisphosp 66.8 1.3E+02 0.0028 29.2 14.4 124 79-220 4-148 (347)
452 PRK08610 fructose-bisphosphate 66.6 61 0.0013 30.3 10.0 106 93-215 79-210 (286)
453 cd01541 PBP1_AraR Ligand-bindi 66.6 55 0.0012 27.9 9.1 79 130-214 7-89 (273)
454 PRK08999 hypothetical protein; 66.6 76 0.0016 28.8 10.4 84 90-190 224-307 (312)
455 COG0413 PanB Ketopantoate hydr 66.5 32 0.00068 32.3 7.9 112 78-213 57-201 (268)
456 PF01116 F_bP_aldolase: Fructo 66.4 76 0.0016 29.6 10.5 119 84-220 9-139 (287)
457 PLN03228 methylthioalkylmalate 66.3 22 0.00047 35.9 7.3 71 135-207 202-280 (503)
458 TIGR01496 DHPS dihydropteroate 66.2 39 0.00084 30.7 8.4 98 105-221 29-132 (257)
459 PF00532 Peripla_BP_1: Peripla 66.1 38 0.00083 30.3 8.3 70 137-214 16-85 (279)
460 cd01575 PBP1_GntR Ligand-bindi 66.1 55 0.0012 27.5 8.9 75 133-214 10-84 (268)
461 cd00959 DeoC 2-deoxyribose-5-p 66.0 70 0.0015 27.6 9.7 64 128-194 60-127 (203)
462 TIGR02417 fruct_sucro_rep D-fr 66.0 60 0.0013 28.8 9.5 71 136-212 74-144 (327)
463 TIGR02660 nifV_homocitr homoci 65.9 15 0.00032 34.9 5.9 106 87-210 122-244 (365)
464 PRK07107 inosine 5-monophospha 65.6 12 0.00027 37.4 5.5 67 102-190 244-311 (502)
465 PRK11572 copper homeostasis pr 65.6 87 0.0019 28.9 10.6 83 94-190 3-92 (248)
466 TIGR01858 tag_bisphos_ald clas 65.4 87 0.0019 29.2 10.7 109 89-214 70-206 (282)
467 COG3473 Maleate cis-trans isom 65.3 26 0.00057 32.2 7.0 123 75-213 40-209 (238)
468 PF01070 FMN_dh: FMN-dependent 65.3 1.2E+02 0.0027 28.9 12.0 98 78-191 211-309 (356)
469 TIGR02090 LEU1_arch isopropylm 65.2 15 0.00033 34.9 5.8 89 105-210 147-243 (363)
470 cd06313 PBP1_ABC_sugar_binding 65.2 53 0.0011 28.4 8.8 73 136-214 13-86 (272)
471 cd02929 TMADH_HD_FMN Trimethyl 65.0 1.3E+02 0.0028 28.7 12.3 128 77-217 138-298 (370)
472 TIGR01702 CO_DH_cata carbon-mo 65.0 80 0.0017 32.9 11.2 152 81-240 419-606 (621)
473 TIGR01768 GGGP-family geranylg 64.6 16 0.00034 33.1 5.5 42 104-157 19-60 (223)
474 PRK00748 1-(5-phosphoribosyl)- 64.5 59 0.0013 28.0 9.0 88 101-207 31-119 (233)
475 TIGR03569 NeuB_NnaB N-acetylne 64.3 60 0.0013 30.9 9.6 82 83-186 80-161 (329)
476 cd01299 Met_dep_hydrolase_A Me 64.2 17 0.00037 32.9 5.7 15 201-215 166-180 (342)
477 PLN02617 imidazole glycerol ph 64.1 60 0.0013 33.0 10.1 89 104-211 443-536 (538)
478 cd06359 PBP1_Nba_like Type I p 64.0 93 0.002 27.8 10.4 151 81-232 54-238 (333)
479 TIGR00693 thiE thiamine-phosph 63.9 87 0.0019 26.2 11.4 97 79-193 84-182 (196)
480 cd07941 DRE_TIM_LeuA3 Desulfob 63.6 1.2E+02 0.0025 27.6 11.7 105 104-214 83-201 (273)
481 cd03316 MR_like Mandelate race 63.6 1E+02 0.0022 28.5 10.8 98 104-213 146-245 (357)
482 PRK06552 keto-hydroxyglutarate 63.6 53 0.0012 29.2 8.6 84 82-191 99-183 (213)
483 PF01791 DeoC: DeoC/LacD famil 63.6 29 0.00063 30.5 7.0 90 107-218 27-134 (236)
484 PF09587 PGA_cap: Bacterial ca 63.6 58 0.0013 28.8 8.9 105 115-243 2-123 (250)
485 cd02933 OYE_like_FMN Old yello 63.4 24 0.00052 33.3 6.7 70 103-193 245-316 (338)
486 COG0042 tRNA-dihydrouridine sy 63.3 78 0.0017 29.8 10.1 115 102-221 82-212 (323)
487 cd07381 MPP_CapA CapA and rela 63.1 57 0.0012 28.5 8.6 78 133-214 20-113 (239)
488 cd04732 HisA HisA. Phosphorib 63.0 99 0.0021 26.6 10.8 124 80-219 61-201 (234)
489 PLN02489 homocysteine S-methyl 63.0 54 0.0012 31.0 9.0 103 79-212 160-271 (335)
490 PRK06256 biotin synthase; Vali 63.0 73 0.0016 29.3 9.7 68 137-214 125-206 (336)
491 cd04823 ALAD_PBGS_aspartate_ri 62.7 78 0.0017 30.5 9.9 106 104-213 147-267 (320)
492 cd01540 PBP1_arabinose_binding 62.7 64 0.0014 27.8 8.8 72 136-214 13-85 (289)
493 COG1879 RbsB ABC-type sugar tr 62.4 71 0.0015 28.6 9.4 52 168-220 76-128 (322)
494 cd02808 GltS_FMN Glutamate syn 62.4 1.4E+02 0.003 28.8 11.8 91 92-191 215-314 (392)
495 PRK10014 DNA-binding transcrip 62.4 69 0.0015 28.5 9.2 71 137-213 79-149 (342)
496 cd04742 NPD_FabD 2-Nitropropan 62.4 67 0.0014 31.8 9.8 104 81-209 152-272 (418)
497 TIGR01769 GGGP geranylgeranylg 62.3 52 0.0011 29.3 8.3 67 103-190 138-204 (205)
498 COG0159 TrpA Tryptophan syntha 62.3 1.4E+02 0.003 28.0 12.2 111 90-226 93-224 (265)
499 PLN02489 homocysteine S-methyl 62.3 53 0.0012 31.0 8.8 81 153-239 132-233 (335)
500 cd02811 IDI-2_FMN Isopentenyl- 62.2 1.4E+02 0.003 28.0 11.7 84 100-193 127-211 (326)
No 1
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=100.00 E-value=5.3e-68 Score=478.89 Aligned_cols=165 Identities=53% Similarity=0.889 Sum_probs=138.4
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
||+|+.+|+++|++|+||+|+|||||++|+++|++|+|+||||||+||++|||+||.+||||||+||+++|+||++++|+
T Consensus 1 kk~t~~~l~~~k~~g~ki~~lTaYD~~~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~v 80 (261)
T PF02548_consen 1 KKVTVSDLRKMKQKGEKIVMLTAYDYPSARIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFV 80 (261)
T ss_dssp ----HHHHHHHHHHT--EEEEE--SHHHHHHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEE
T ss_pred CCccHHHHHHHHhCCCcEEEEecccHHHHHHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCcccccccccCccccccCHH
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVT 236 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvqGkt~~ 236 (243)
++||||+||+.|+++|++||.|++||+|||+||||||.+. .++|++|+++|||||||||||||+++++||||+||||++
T Consensus 81 v~DmPf~sy~~s~e~av~nA~rl~ke~GadaVKlEGg~~~-~~~i~~l~~~GIPV~gHiGLtPQ~~~~~GGyr~qGk~~~ 159 (261)
T PF02548_consen 81 VADMPFGSYQASPEQAVRNAGRLMKEAGADAVKLEGGAEI-AETIKALVDAGIPVMGHIGLTPQSVHQLGGYRVQGKTAE 159 (261)
T ss_dssp EEE--TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBSGGG-HHHHHHHHHTT--EEEEEES-GGGHHHHTSS--CSTSHH
T ss_pred EecCCcccccCCHHHHHHHHHHHHHhcCCCEEEeccchhH-HHHHHHHHHCCCcEEEEecCchhheeccCCceEEecCHH
Confidence 9999999999999999999999999999999999999865 566999999999999999999999999999999999999
Q ss_pred hhcccc
Q 026125 237 SAVKVF 242 (243)
Q Consensus 237 ~A~~ll 242 (243)
+|++|+
T Consensus 160 ~a~~l~ 165 (261)
T PF02548_consen 160 EAEKLL 165 (261)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999886
No 2
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=100.00 E-value=7.7e-65 Score=470.55 Aligned_cols=185 Identities=85% Similarity=1.325 Sum_probs=174.2
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCH
Q 026125 58 MSNIPENSVYGGPKPQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITL 137 (243)
Q Consensus 58 ~s~~~~~~~~~~~~~~~~~~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTl 137 (243)
||+.|+.++|+.+.++.+.+|+|+.+|+++|++|+||+|+|||||++|+++|++|||+||||||++|++|||+||.+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~k~ti~~l~~~k~~g~kivmlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtl 80 (332)
T PLN02424 1 MSNLPEDTVYGGPKPQNPAQRVTLRTLRQKYRRGEPITMVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITL 80 (332)
T ss_pred CCCCCcccccCCCCcccCCCCcCHHHHHHHHhCCCcEEEEecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCH
Confidence 68899999998887655456799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCC
Q 026125 138 EEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGL 217 (243)
Q Consensus 138 deMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGL 217 (243)
|||++|+++|+||++++|+|+|||||||+.|+|++++||.|+|+|+||++||||||......+|++|+++||||||||||
T Consensus 81 d~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~~GIPV~gHiGL 160 (332)
T PLN02424 81 DEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIVEAGIAVMGHVGL 160 (332)
T ss_pred HHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHHHcCCCEEEeecc
Confidence 99999999999999999999999999999899999999999999999999999999323456699999999999999999
Q ss_pred cccccccccCccccccCHHhhcccc
Q 026125 218 TPQAISVLGGFRPQGKNVTSAVKVF 242 (243)
Q Consensus 218 tPQ~~~~~GGykvqGkt~~~A~~ll 242 (243)
|||+++++||||+|||+.++|++|+
T Consensus 161 tPQs~~~lGGykvqGr~~~~a~~li 185 (332)
T PLN02424 161 TPQAISVLGGFRPQGRTAESAVKVV 185 (332)
T ss_pred cceeehhhcCccccCCCHHHHHHHH
Confidence 9999999999999999999988875
No 3
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=4.8e-65 Score=458.09 Aligned_cols=164 Identities=51% Similarity=0.848 Sum_probs=158.8
Q ss_pred CCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 78 ~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
++|+.+|+++|++++||+|+|||||++|++++++|+|+||||||+||+++||++|++||+|||++|+++|+||++++|++
T Consensus 1 ~~t~~~~~~~k~~~~ki~~lTAYD~~~A~~~d~agvd~lLVGDSlgmvv~G~~sTl~Vsl~~mi~ht~aV~Rga~~~~vv 80 (268)
T COG0413 1 KITTRTLIKMKQEGEKIVMLTAYDYPFAKLFDQAGVDVLLVGDSLGMVVLGYDSTLPVTLEDMIYHTKAVRRGAPNAFVV 80 (268)
T ss_pred CccHHHHHHHHhcCCceEEEeccccHHHhhhhhcCCcEEEEeccHHHHHcCCCCcceecHHHHHHHHHHHHhcCCCeeEE
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCcccccccccCccccccCHHh
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTS 237 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvqGkt~~~ 237 (243)
+|||||||+.|++++++||.|+|||+|||+||||||.+. .++|++|+++|||||||||||||+++++||||+|||+.++
T Consensus 81 ~DmPF~sy~~s~~~a~~nA~r~~ke~gA~aVKlEGG~~~-~~~i~~L~~~gIPV~gHiGLtPQ~v~~~GGykvqGr~~~~ 159 (268)
T COG0413 81 ADLPFGSYEVSPEQALKNAARLMKEAGADAVKLEGGEEM-AETIKRLTERGIPVMGHIGLTPQSVNWLGGYKVQGRTEES 159 (268)
T ss_pred eCCCCcccCCCHHHHHHHHHHHHHHhCCCEEEEcCCHHH-HHHHHHHHHcCCceEEEecCChhhhhccCCeeeecCCHHH
Confidence 999999999999999999999999999999999999765 5668999999999999999999999999999999999999
Q ss_pred hcccc
Q 026125 238 AVKVF 242 (243)
Q Consensus 238 A~~ll 242 (243)
|++|+
T Consensus 160 a~~l~ 164 (268)
T COG0413 160 AEKLL 164 (268)
T ss_pred HHHHH
Confidence 99986
No 4
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1e-59 Score=419.79 Aligned_cols=171 Identities=79% Similarity=1.247 Sum_probs=165.8
Q ss_pred CCCCCCCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc
Q 026125 72 PQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA 151 (243)
Q Consensus 72 ~~~~~~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga 151 (243)
|+++.+++|+.+||+++..|+||+|+|||||++|++++++|+|++|||||++|+++||++|+++++|||.|||++|+||+
T Consensus 18 ~~n~~k~~Ti~~lRqk~~~g~p~t~~TAYD~~~a~~~~~ag~dv~LVGDSl~Mt~~GhdtTlpiSl~e~~yH~~sV~Rga 97 (306)
T KOG2949|consen 18 PQNSNKRVTITTLRQKHRAGEPITMVTAYDYPSAVHFDTAGIDVCLVGDSLAMTVHGHDTTLPISLEEMLYHCRSVARGA 97 (306)
T ss_pred cccccceeeHHHHHHHHhcCCceEEEEecccchhhhhhhcCCcEEEeccchhheeeccccceeeeHHHHHHHHHHHHccC
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCcccccccccCcccc
Q 026125 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQ 231 (243)
Q Consensus 152 ~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvq 231 (243)
+++++++|||||+|+.+.+++++||++.||++|+++||+|||.....+++++|+++|||||||+|||||+++.+||||+|
T Consensus 98 ~~~llv~DlPFgtyeS~~sda~knAv~vmk~~g~~~vK~EgGs~~~~~~~~~l~ergipV~gHvGLTPQ~v~~lGGyk~Q 177 (306)
T KOG2949|consen 98 KRPLLVGDLPFGTYESSWSDAVKNAVRVMKEGGMDAVKLEGGSNSRITAAKRLVERGIPVMGHVGLTPQAVSVLGGYKPQ 177 (306)
T ss_pred CCceEEEecCcccccccHHHHHHHHHHHHHhcCCceEEEccCcHHHHHHHHHHHHcCCceeeeccCChhhhhhccCcCcc
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred ccCHHhhcccc
Q 026125 232 GKNVTSAVKVF 242 (243)
Q Consensus 232 Gkt~~~A~~ll 242 (243)
||+..+|.+|+
T Consensus 178 Gr~~~~a~~l~ 188 (306)
T KOG2949|consen 178 GRNIASAVKLV 188 (306)
T ss_pred chhHHHHHHHH
Confidence 99999988875
No 5
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=100.00 E-value=8.1e-59 Score=419.86 Aligned_cols=163 Identities=46% Similarity=0.762 Sum_probs=156.3
Q ss_pred CCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 78 ~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
|.|+.+|+++|++|+||+|+||||++||+++|++|||+||||||++|+++||+||.+||+|||++|+++|+||++++|||
T Consensus 1 ~~t~~~~~~~~~~g~~i~m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv 80 (263)
T TIGR00222 1 KKTTLSLLQKKKQEEKIVAITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIV 80 (263)
T ss_pred CCcHHHHHHHHhCCCcEEEEeccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCcccccccccCccccccCHHh
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTS 237 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvqGkt~~~ 237 (243)
+||||+||+ ++|++++||.|+++|+||++||||||.+. .+.|++|+++|||||||||||||+++++||||+||||.++
T Consensus 81 ~DmPf~sy~-~~e~a~~na~rl~~eaGa~aVkiEgg~~~-~~~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~ 158 (263)
T TIGR00222 81 TDLPFMSYA-TPEQALKNAARVMQETGANAVKLEGGEWL-VETVQMLTERGVPVVGHLGLTPQSVNILGGYKVQGKDEEA 158 (263)
T ss_pred eCCCcCCCC-CHHHHHHHHHHHHHHhCCeEEEEcCcHhH-HHHHHHHHHCCCCEEEecCCCceeEeecCCeeecCCCHHH
Confidence 999999997 79999999999999999999999999765 4558999999999999999999999999999999999999
Q ss_pred hcccc
Q 026125 238 AVKVF 242 (243)
Q Consensus 238 A~~ll 242 (243)
|++++
T Consensus 159 a~~~i 163 (263)
T TIGR00222 159 AKKLL 163 (263)
T ss_pred HHHHH
Confidence 88765
No 6
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=100.00 E-value=1.1e-55 Score=399.34 Aligned_cols=164 Identities=52% Similarity=0.891 Sum_probs=157.2
Q ss_pred CCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 78 ~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
++|+.+|+++|++++||+|+||||++||+++|++|||+|+||||++|+++|||||+++|+|||++|+++|+|++++|||+
T Consensus 1 ~~t~~~lr~~~~~g~~i~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vv 80 (264)
T PRK00311 1 RVTISDLQKMKQEGEKIVMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVV 80 (264)
T ss_pred CCCHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCcccccccccCccccccCHHh
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTS 237 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvqGkt~~~ 237 (243)
+|||||+|+.|++++++|+.|+++++||++||||||.+. ...|++|+++|||||||||||||+.+++|||++||||.++
T Consensus 81 aD~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg~~~-~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~ 159 (264)
T PRK00311 81 ADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGGEEV-AETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEA 159 (264)
T ss_pred EeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCcHHH-HHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHH
Confidence 999999999899999999999999899999999999765 4558999999999999999999999999999999999988
Q ss_pred hcccc
Q 026125 238 AVKVF 242 (243)
Q Consensus 238 A~~ll 242 (243)
+++++
T Consensus 160 a~~~i 164 (264)
T PRK00311 160 AEKLL 164 (264)
T ss_pred HHHHH
Confidence 87764
No 7
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=100.00 E-value=2.1e-53 Score=382.59 Aligned_cols=161 Identities=53% Similarity=0.903 Sum_probs=153.5
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
+.+|+++|++++||+|+||||++||+++|++|||+|+||||++|+++|||||+++|+|||++|+++|+|++++|||++||
T Consensus 1 ~~~lr~l~~~~~~l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~ 80 (254)
T cd06557 1 IPDLQKMKKAGEKIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADM 80 (254)
T ss_pred ChhHHHHHhCCCcEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCcccccccccCccccccCHHhhcc
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVK 240 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvqGkt~~~A~~ 240 (243)
|||+|+.|++++++|+.|+++|+||++||||||.+. ...|++|+++|||||||||||||+.+++|||++||||.+++++
T Consensus 81 ~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~~~~-~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~ 159 (254)
T cd06557 81 PFGSYQTSPEQALRNAARLMKEAGADAVKLEGGAEV-AETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAER 159 (254)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCcHHH-HHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHH
Confidence 999998889999999999999999999999999765 4558999999999999999999999999999999999988776
Q ss_pred cc
Q 026125 241 VF 242 (243)
Q Consensus 241 ll 242 (243)
++
T Consensus 160 ~i 161 (254)
T cd06557 160 LL 161 (254)
T ss_pred HH
Confidence 54
No 8
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=100.00 E-value=3e-42 Score=307.82 Aligned_cols=158 Identities=35% Similarity=0.592 Sum_probs=148.0
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC
Q 026125 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (243)
Q Consensus 82 ~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP 161 (243)
.+|+++|++|+||+++||||++||+++|++|+|+|+||||.+|+.+||||+..+|+|||++|+++|+|++++++|++|||
T Consensus 2 ~~~~~~~~~~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~ 81 (240)
T cd06556 2 WLLQKYKQEKERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLP 81 (240)
T ss_pred HhHHHHHhCCCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCC
Confidence 46888888999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCcccccccccCccccccCHHhhccc
Q 026125 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKV 241 (243)
Q Consensus 162 fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvqGkt~~~A~~l 241 (243)
||+|+ +++++++|+.++++ +||++|||||+.+. ...|+++++++||||||+|++||+.+++||||+|||+.++++++
T Consensus 82 ~G~g~-~~~~~~~~~~~l~~-aGa~gv~iED~~~~-~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~a 158 (240)
T cd06556 82 FGAYG-APTAAFELAKTFMR-AGAAGVKIEGGEWH-IETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQL 158 (240)
T ss_pred CCCCc-CHHHHHHHHHHHHH-cCCcEEEEcCcHHH-HHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHH
Confidence 98885 88999999999996 99999999999765 44589999999999999999999999999999999998877664
Q ss_pred c
Q 026125 242 F 242 (243)
Q Consensus 242 l 242 (243)
+
T Consensus 159 i 159 (240)
T cd06556 159 I 159 (240)
T ss_pred H
Confidence 3
No 9
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=99.90 E-value=1.9e-23 Score=186.13 Aligned_cols=107 Identities=24% Similarity=0.353 Sum_probs=100.8
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg 163 (243)
||+++++++||+++++||+.||+++|++|||+|++||+..++.+|+||+..+|++||++|+++|+++++.| +++|+|+|
T Consensus 1 ~r~l~~~~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~P-v~~D~~~G 79 (243)
T cd00377 1 LRALLESGGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLP-VIADADTG 79 (243)
T ss_pred ChhHHhCCCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCC-EEEEcCCC
Confidence 57888999999999999999999999999999999999999999999999999999999999999999888 89999995
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 164 sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
|+ +++++.+|+.++++ +||++|+|||+.
T Consensus 80 -~g-~~~~~~~~v~~~~~-~G~~gv~iED~~ 107 (243)
T cd00377 80 -YG-NALNVARTVRELEE-AGAAGIHIEDQV 107 (243)
T ss_pred -CC-CHHHHHHHHHHHHH-cCCEEEEEecCC
Confidence 84 88999999888885 999999999984
No 10
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=99.74 E-value=1.8e-17 Score=148.32 Aligned_cols=106 Identities=27% Similarity=0.384 Sum_probs=89.4
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF 162 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf 162 (243)
||++++++++++++++||+.||+++|++|||++. .|.+++.+ +|+||.+.+|++||+.+++.|++.++.| |++|...
T Consensus 1 fr~L~~~~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s-~G~pD~~~lt~~e~~~~~~~I~~~~~iP-v~vD~d~ 78 (238)
T PF13714_consen 1 FRQLHEPGKPLVLPNVWDALSARLAERAGFDAIATSGAGVAAS-LGYPDGGLLTLTEMLAAVRRIARAVSIP-VIVDADT 78 (238)
T ss_dssp HHHHHHSSSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHH-TTS-SSS-S-HHHHHHHHHHHHHHSSSE-EEEE-TT
T ss_pred ChhhhcCCCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHH-cCCCCCCCCCHHHHHHHHHHHHhhhcCc-EEEEccc
Confidence 6888888899999999999999999999999996 55566654 4999999999999999999999999877 7899988
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 163 GTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 163 gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
+|+.++++..+++.++. ++||.+|.|||.
T Consensus 79 -GyG~~~~~v~~tv~~~~-~aG~agi~IEDq 107 (238)
T PF13714_consen 79 -GYGNDPENVARTVRELE-RAGAAGINIEDQ 107 (238)
T ss_dssp -TSSSSHHHHHHHHHHHH-HCT-SEEEEESB
T ss_pred -ccCchhHHHHHHHHHHH-HcCCcEEEeecc
Confidence 78655999999998888 599999999999
No 11
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=99.73 E-value=2.7e-17 Score=151.31 Aligned_cols=109 Identities=18% Similarity=0.297 Sum_probs=99.7
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 82 ~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
..||++++.+++++++++||+.||+++|++||++|. .|.++++..+|+||.+.+|++||+.+++.|++.++.| |++|.
T Consensus 7 ~~lr~ll~~~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iP-viaD~ 85 (292)
T PRK11320 7 ARFRAALAAEKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLP-LLVDI 85 (292)
T ss_pred HHHHHHHcCCCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCC-EEEEC
Confidence 459999999999999999999999999999999995 6667877899999999999999999999999999998 78888
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
.- +|+ ++++..+++.++. ++||.+|.|||..
T Consensus 86 d~-GyG-~~~~v~r~V~~~~-~aGaagi~IEDq~ 116 (292)
T PRK11320 86 DT-GFG-GAFNIARTVKSMI-KAGAAAVHIEDQV 116 (292)
T ss_pred CC-CCC-CHHHHHHHHHHHH-HcCCeEEEEecCC
Confidence 88 786 8999999998888 6999999999963
No 12
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=99.73 E-value=3.5e-17 Score=150.75 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=97.5
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 82 ~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
..||++++++++++++++||+.||+++|++|++++.+ |.+++...+|+||.+.+|++||+.+++.|++.++.| |++|.
T Consensus 6 ~~~r~l~~~~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lP-v~aD~ 84 (294)
T TIGR02319 6 RTFRELMNAPEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVP-VIMDA 84 (294)
T ss_pred HHHHHHhcCCCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCC-EEEEC
Confidence 4699999999999999999999999999999999975 777777889999999999999999999999999988 78888
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
.- +|+ ++.+..+++.++. ++||.+|.|||..
T Consensus 85 dt-GyG-~~~~v~r~V~~~~-~aGaagi~IEDq~ 115 (294)
T TIGR02319 85 DA-GYG-NAMSVWRATREFE-RVGIVGYHLEDQV 115 (294)
T ss_pred CC-CCC-CcHHHHHHHHHHH-HcCCeEEEEECCC
Confidence 87 785 5566778877777 6999999999963
No 13
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=99.71 E-value=9.1e-17 Score=147.35 Aligned_cols=107 Identities=19% Similarity=0.230 Sum_probs=96.5
Q ss_pred HHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC
Q 026125 83 HLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (243)
Q Consensus 83 ~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP 161 (243)
.||++++.++++.++++||+.||++++++||++|. .|.+++. .+|+||.+.+|++||+.+++.|++.++.| |++|..
T Consensus 4 ~lr~l~~~~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~-~lG~pD~g~lt~~e~~~~~~~I~~~~~iP-viaD~d 81 (285)
T TIGR02317 4 AFRAALAKEDILQIPGAINAMAALLAERAGFEAIYLSGAAVAA-SLGLPDLGITTLDEVAEDARRITRVTDLP-LLVDAD 81 (285)
T ss_pred HHHHHHhCCCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHH-hCCCCCCCCCCHHHHHHHHHHHHhccCCC-EEEECC
Confidence 59999999999999999999999999999999996 5555555 89999999999999999999999999988 788888
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 162 fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
- +|+ ++++..+++.++. ++||.+|.|||..
T Consensus 82 ~-GyG-~~~~v~~tv~~~~-~aG~agi~IEDq~ 111 (285)
T TIGR02317 82 T-GFG-EAFNVARTVREME-DAGAAAVHIEDQV 111 (285)
T ss_pred C-CCC-CHHHHHHHHHHHH-HcCCeEEEEecCC
Confidence 8 785 6999999988888 6999999999963
No 14
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=99.69 E-value=1.9e-16 Score=145.58 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=94.8
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeC-cchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVG-DSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 82 ~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVG-DSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
..||++.++++.+.++++||+.||++++++||++|.++ .+++.. +|+||.+.+|++||+.+++.|++.++.| |++|+
T Consensus 5 ~~lr~~l~~~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~s-lG~pD~g~l~~~e~~~~~~~I~~~~~lP-v~aD~ 82 (290)
T TIGR02321 5 QALRAALDSGRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSAS-YAVPDANILSMSTHLEMMRAIASTVSIP-LIADI 82 (290)
T ss_pred HHHHHHHhCCCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHHH-CCCCCcccCCHHHHHHHHHHHHhccCCC-EEEEC
Confidence 46999999999999999999999999999999999655 455544 9999999999999999999999999988 78999
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
.- +|+ ++.+..+++.++. ++||.+|.|||..
T Consensus 83 d~-GyG-~~~~v~~tV~~~~-~aGvagi~IEDq~ 113 (290)
T TIGR02321 83 DT-GFG-NAVNVHYVVPQYE-AAGASAIVMEDKT 113 (290)
T ss_pred CC-CCC-CcHHHHHHHHHHH-HcCCeEEEEeCCC
Confidence 88 785 4557888887777 6999999999973
No 15
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=99.65 E-value=7.8e-16 Score=141.44 Aligned_cols=108 Identities=23% Similarity=0.352 Sum_probs=96.5
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE-EeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 82 ~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI-LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
..||++++++.+++++++||+.+|++++++||+.| +.|.+++. .+|+||....|++|++++++.|.+++..| |++|.
T Consensus 8 ~~fR~l~~~~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~-slG~pD~~~~t~~e~~~~vrrI~~a~~lP-v~vD~ 85 (289)
T COG2513 8 AAFRALHASGDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAA-SLGLPDLGITTLDEVLADARRITDAVDLP-VLVDI 85 (289)
T ss_pred HHHHHHHhCCCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHH-hcCCCccccccHHHHHHHHHHHHhhcCCc-eEEec
Confidence 46999999999999999999999999999999999 57777777 99999999999999999999999999999 56777
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
.- +|+ ++.++.+++.++. ++|+.+|.|||-.
T Consensus 86 dt-GfG-~~~nvartV~~~~-~aG~agi~iEDq~ 116 (289)
T COG2513 86 DT-GFG-EALNVARTVRELE-QAGAAGIHIEDQV 116 (289)
T ss_pred cC-CCC-cHHHHHHHHHHHH-HcCcceeeeeecc
Confidence 66 675 4888888887777 5999999999874
No 16
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=99.65 E-value=1.3e-15 Score=139.60 Aligned_cols=104 Identities=16% Similarity=0.113 Sum_probs=93.5
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHc---------CCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAVHLDSA---------GIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR 153 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~iae~A---------GiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~ 153 (243)
||++.++++++.++++||+.||+++|++ |||+|. .|.+++ ..+|+||...+|++||+.+++.|.+.++.
T Consensus 1 lr~~l~~~~~l~~p~~~D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a-~s~G~pD~~~~~~~e~~~~~~~I~~a~~~ 79 (285)
T TIGR02320 1 LRQLLHSKPLERLMEAHNGLSALIAEEARVEVGGESLGFDGIWSSSLTDS-TSRGVPDIEEASWTQRLDVVEFMFDVTTK 79 (285)
T ss_pred ChHHhcCCCCEEEecCcCHHHHHHHHHhhhcccCcCCCcCEEEechHHHH-HHCCCCCcCcCCHHHHHHHHHHHHhhcCC
Confidence 5677788899999999999999999999 999996 444555 56999999999999999999999999988
Q ss_pred CcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 154 ~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
| |++|...| . ++++..+++.++. ++||.+|.|||.
T Consensus 80 P-v~~D~d~G--g-~~~~v~r~V~~l~-~aGvaGi~iEDq 114 (285)
T TIGR02320 80 P-IILDGDTG--G-NFEHFRRLVRKLE-RRGVSAVCIEDK 114 (285)
T ss_pred C-EEEecCCC--C-CHHHHHHHHHHHH-HcCCeEEEEecc
Confidence 8 79999997 3 8999999998888 599999999995
No 17
>PRK15063 isocitrate lyase; Provisional
Probab=99.36 E-value=4.3e-12 Score=122.29 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=94.4
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE-eCcchhh----hhccCCCCccCCHHHHHHHHHHHHcccC-
Q 026125 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAM----VVHGHDTTLPITLEEMLVHCRAVARGAK- 152 (243)
Q Consensus 79 ~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL-VGDSlgm----v~lG~~dT~~vTldeMi~h~~aV~Rga~- 152 (243)
..-..|+++.+++.++..++|||..+|++++++|+++|. .|-.+++ ..+||||...+++++|...++.|.++..
T Consensus 50 ~~a~kLr~lL~~~~~~~~~Ga~d~~~A~q~~~aGf~AIy~SG~~vAa~~~~s~~g~PD~~l~p~~~v~~~v~~I~~a~~~ 129 (428)
T PRK15063 50 RGAEKLWELLHGEPYVNALGALTGNQAVQQVKAGLKAIYLSGWQVAADANLAGQMYPDQSLYPANSVPAVVKRINNALRR 129 (428)
T ss_pred HHHHHHHHHHhCCCcEEecCCCCHHHHHHHHHhCCCEEEECHHHHhcCcccccCCCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 445678998899999999999999999999999999995 6656666 5799999999999999999999998863
Q ss_pred -----------------CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 153 -----------------RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 153 -----------------~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
.| ||+|..- +|+ ++.++.+++.+++ ++||.+|+|||.
T Consensus 130 ~d~~~~~~~~~~~~d~~~P-IiADaDt-GfG-g~~nv~~~vk~~i-eAGaAGIhiEDQ 183 (428)
T PRK15063 130 ADQIQWSEGDKGYIDYFAP-IVADAEA-GFG-GVLNAFELMKAMI-EAGAAGVHFEDQ 183 (428)
T ss_pred hhhHhhhhcccccccCCCC-eEEECCC-CCC-CcHHHHHHHHHHH-HcCCeEEEEeCC
Confidence 45 7888776 674 5667888877766 799999999997
No 18
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=98.06 E-value=1.8e-05 Score=78.55 Aligned_cols=105 Identities=13% Similarity=0.102 Sum_probs=83.1
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE-eCcchhhhh----ccCCCCccCCHHHHHHHHHHHHcc--------
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAMVV----HGHDTTLPITLEEMLVHCRAVARG-------- 150 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL-VGDSlgmv~----lG~~dT~~vTldeMi~h~~aV~Rg-------- 150 (243)
|++..++|..+..++|+|..+|...+++ +|.|. .|=..+... .++||-...+++.+..-++.|.++
T Consensus 51 l~~~~~~~~~~~tlGAld~~qa~q~~ka-l~aIY~SGwq~Sa~~~~~~e~~PD~s~yp~~tVp~~V~~i~~aq~~hDr~q 129 (527)
T TIGR01346 51 LTQHGDNKTYSNTFGALDPVQASQMAKY-LDAIYLSGWQCSSTANTSNEPGPDLADYPADTVPNKVEHLFNAQLFHDRKQ 129 (527)
T ss_pred HHHhhhcCCceeeccccCHHHHHHHHHH-hhheehhHHHHHhhhcccCCCCCCcccccccccHHHHHHHHHHHHHHHHHH
Confidence 4445567789999999999999999999 99995 454444432 599999999999999888888776
Q ss_pred -------------------cCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 151 -------------------AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 151 -------------------a~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
.-.| |++|..- +|+ +..++.+++.+++ ++||.+|.|||.
T Consensus 130 ~~~~~~~~~~~r~~~~~~D~~iP-IiaD~Dt-GyG-~~~~v~~~vk~~i-eaGAaGI~IEDq 187 (527)
T TIGR01346 130 REARDTSVDNERSKTPYIDYLVP-IVADGDA-GFG-GATAVFKLQKAFI-ERGAAGVHWEDQ 187 (527)
T ss_pred HHhccccchhhhccccccccccc-eEEECCC-CCC-CcHHHHHHHHHHH-HcCCeEEEEEcC
Confidence 2233 7888877 775 4555788888777 699999999996
No 19
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=97.85 E-value=0.00031 Score=65.12 Aligned_cols=123 Identities=16% Similarity=0.147 Sum_probs=84.5
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCC--C-CccCCHHHHHHHHHHHHcccCC-CcEE---eeCCCCCCcCCHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHD--T-TLPITLEEMLVHCRAVARGAKR-PLLV---GDLPFGTYESSTNQAVDTA 176 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~--d-T~~vTldeMi~h~~aV~Rga~~-~fvV---aDmPfgsY~~s~e~Av~nA 176 (243)
+.+-.+++|+-.|.+-|...---.|+- . -..++.|||+...++++.+... .|+| .|--+.+. ..++|++-+
T Consensus 95 tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~--g~deAI~Ra 172 (290)
T TIGR02321 95 VVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGL--GQQEAVRRG 172 (290)
T ss_pred HHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccC--CHHHHHHHH
Confidence 356678999999999997655555553 2 2357999999999999876433 2554 56544333 579999998
Q ss_pred HHHHHHhCCCEEEeCCCCCchHHHHHHHHHc--C-CceeeccCCccc----ccccccCccc
Q 026125 177 VRILKEGGMDAIKLEGGSPSRITAARGIVEA--G-IAVMGHVGLTPQ----AISVLGGFRP 230 (243)
Q Consensus 177 ~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~--G-IPV~GHiGLtPQ----~~~~~GGykv 230 (243)
.... ++|||+|.+|++.....+ +++++++ + +||+-.-|.+|. ....+|+|++
T Consensus 173 ~aY~-eAGAD~ifv~~~~~~~~e-i~~~~~~~~~p~pv~~~~~~~p~~~~~~l~~lg~~~~ 231 (290)
T TIGR02321 173 QAYE-EAGADAILIHSRQKTPDE-ILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGI 231 (290)
T ss_pred HHHH-HcCCCEEEecCCCCCHHH-HHHHHHhcCCCCCeEEecCCCCCCCHHHHHHhcCCcE
Confidence 7666 799999999986322333 6677773 3 688644344453 4556776665
No 20
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=97.40 E-value=0.003 Score=58.44 Aligned_cols=107 Identities=12% Similarity=0.098 Sum_probs=72.6
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCC----ccCCHHHHHHHHHHHHccc-CC-CcEEeeCC--CCCCcCCHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTT----LPITLEEMLVHCRAVARGA-KR-PLLVGDLP--FGTYESSTNQAVDTA 176 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT----~~vTldeMi~h~~aV~Rga-~~-~fvVaDmP--fgsY~~s~e~Av~nA 176 (243)
.+..+++|+..|.+-|...--.-||-.. ..++.|||+...++++++. +. -+|++=.. ..+. +.+++++-|
T Consensus 98 V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~--~~~eAi~Ra 175 (285)
T TIGR02320 98 VRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGK--GMEDALKRA 175 (285)
T ss_pred HHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccC--CHHHHHHHH
Confidence 4566789999999999875544443222 4689999999999998763 33 34554433 3233 589999998
Q ss_pred HHHHHHhCCCEEEeCCCCCchHHHHHHHHHc------CCceeecc
Q 026125 177 VRILKEGGMDAIKLEGGSPSRITAARGIVEA------GIAVMGHV 215 (243)
Q Consensus 177 ~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~------GIPV~GHi 215 (243)
.+.. ++|||+|.++++.....+ ++.++++ .+||+..-
T Consensus 176 ~ay~-eAGAD~ifv~~~~~~~~e-i~~~~~~~~~~~p~~pl~~~~ 218 (285)
T TIGR02320 176 EAYA-EAGADGIMIHSRKKDPDE-ILEFARRFRNHYPRTPLVIVP 218 (285)
T ss_pred HHHH-HcCCCEEEecCCCCCHHH-HHHHHHHhhhhCCCCCEEEec
Confidence 7666 799999999975332233 4445543 46887543
No 21
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=97.40 E-value=0.002 Score=57.90 Aligned_cols=106 Identities=21% Similarity=0.284 Sum_probs=76.1
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCC-CccCCHHHHHHHHHHHHcccCC---CcEE--eeCCCCCCcCCHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDT-TLPITLEEMLVHCRAVARGAKR---PLLV--GDLPFGTYESSTNQAVDTAVR 178 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~d-T~~vTldeMi~h~~aV~Rga~~---~fvV--aDmPfgsY~~s~e~Av~nA~R 178 (243)
++...++|++.|.+-|...---.|+-. -..++.||++...++++.+.+. .+|+ .|--..+ ..+.+++++-+..
T Consensus 90 v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~-~~~~~eai~Ra~a 168 (243)
T cd00377 90 VRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAG-EEGLDEAIERAKA 168 (243)
T ss_pred HHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhcc-CCCHHHHHHHHHH
Confidence 445567999999998887543334322 3567999999999999998875 4455 4443322 1368999999977
Q ss_pred HHHHhCCCEEEeCCCCCchHHHHHHHHHc-CCceeec
Q 026125 179 ILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 179 l~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~GH 214 (243)
.. ++|||+|.+++... .+-+++++++ .+||+--
T Consensus 169 y~-~AGAD~v~v~~~~~--~~~~~~~~~~~~~Pl~~~ 202 (243)
T cd00377 169 YA-EAGADGIFVEGLKD--PEEIRAFAEAPDVPLNVN 202 (243)
T ss_pred HH-HcCCCEEEeCCCCC--HHHHHHHHhcCCCCEEEE
Confidence 77 69999999998753 3336777776 5787755
No 22
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=97.37 E-value=0.0042 Score=57.62 Aligned_cols=102 Identities=19% Similarity=0.206 Sum_probs=75.9
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHcccCCC-cEE---eeCCCCCCcCCHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKRP-LLV---GDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga~~~-fvV---aDmPfgsY~~s~e~Av~nA~Rl 179 (243)
.+-.+++|+..|.+-|...----|+... ..++.|||+...++++.+...+ |+| .|--. .. ..++|++-+...
T Consensus 94 v~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~-~~--g~deAI~Ra~ay 170 (285)
T TIGR02317 94 VREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARA-VE--GLDAAIERAKAY 170 (285)
T ss_pred HHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCccc-cc--CHHHHHHHHHHH
Confidence 5678899999999999886555576554 4679999999999999877643 444 45432 22 589999998776
Q ss_pred HHHhCCCEEEeCCCCCchHHHHHHHHHc-CCcee
Q 026125 180 LKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVM 212 (243)
Q Consensus 180 ~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~ 212 (243)
. ++|||+|.+||-.. ..+ +++++++ .+|++
T Consensus 171 ~-~AGAD~vfi~g~~~-~e~-i~~~~~~i~~Pl~ 201 (285)
T TIGR02317 171 V-EAGADMIFPEALTS-LEE-FRQFAKAVKVPLL 201 (285)
T ss_pred H-HcCCCEEEeCCCCC-HHH-HHHHHHhcCCCEE
Confidence 6 69999999998653 333 6777775 46664
No 23
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.27 E-value=0.012 Score=48.49 Aligned_cols=81 Identities=26% Similarity=0.188 Sum_probs=59.0
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc--CCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA--KRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga--~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
..|+.+.++|+|.+++.-.... .++. +.+++..|.++|++.+ +.|+++-+.|..+ .++++..+. .|+.
T Consensus 69 ~~a~~a~~~Gad~i~v~~~~~~----~~~~---~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~--~~~~~~~~~-~~~~ 138 (201)
T cd00945 69 AEVEEAIDLGADEIDVVINIGS----LKEG---DWEEVLEEIAAVVEAADGGLPLKVILETRGL--KTADEIAKA-ARIA 138 (201)
T ss_pred HHHHHHHHcCCCEEEEeccHHH----HhCC---CHHHHHHHHHHHHHHhcCCceEEEEEECCCC--CCHHHHHHH-HHHH
Confidence 5678889999999987533321 1111 4788999999999984 7888888889866 356655444 5556
Q ss_pred HHhCCCEEEeCCC
Q 026125 181 KEGGMDAIKLEGG 193 (243)
Q Consensus 181 keaGAdaVKLEGg 193 (243)
++.|+++||...|
T Consensus 139 ~~~g~~~iK~~~~ 151 (201)
T cd00945 139 AEAGADFIKTSTG 151 (201)
T ss_pred HHhCCCEEEeCCC
Confidence 6899999999876
No 24
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.0025 Score=59.43 Aligned_cols=101 Identities=21% Similarity=0.256 Sum_probs=81.5
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccC-CCCccCCHHHHHHHHHHHHcccC-CCcEE-eeCCCCCCcCCHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGH-DTTLPITLEEMLVHCRAVARGAK-RPLLV-GDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~-~dT~~vTldeMi~h~~aV~Rga~-~~fvV-aDmPfgsY~~s~e~Av~nA~Rl 179 (243)
-+.+.++++|+-.|.+-|.++--..|| ++...++.|||+...++++++.+ ..|+| +=..--.-+ ..++|++-|...
T Consensus 97 rtV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~-~ld~AI~Ra~AY 175 (289)
T COG2513 97 RTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVE-GLDDAIERAQAY 175 (289)
T ss_pred HHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhc-cHHHHHHHHHHH
Confidence 456788999999999999999888899 88899999999999999999886 34544 555443443 479999999766
Q ss_pred HHHhCCCEEEeCCCCCchHHHHHHHHHc
Q 026125 180 LKEGGMDAIKLEGGSPSRITAARGIVEA 207 (243)
Q Consensus 180 ~keaGAdaVKLEGg~~~~~~~i~~L~~~ 207 (243)
. |+|||+|..|+=.. .+-+++++++
T Consensus 176 ~-eAGAD~if~~al~~--~e~i~~f~~a 200 (289)
T COG2513 176 V-EAGADAIFPEALTD--LEEIRAFAEA 200 (289)
T ss_pred H-HcCCcEEccccCCC--HHHHHHHHHh
Confidence 6 79999999998865 3446778774
No 25
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=97.11 E-value=0.01 Score=55.31 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=75.3
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHcccCCC-cEE---eeCCCCCCcCCHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKRP-LLV---GDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga~~~-fvV---aDmPfgsY~~s~e~Av~nA~Rl 179 (243)
.+-.+++|+-.|.+-|...--.-|+-+. ..++.+||+...++++.+...+ |+| .|- +..+ ..+++++-+...
T Consensus 98 V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa-~~~~--g~deaI~Ra~aY 174 (294)
T TIGR02319 98 TREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDA-RESF--GLDEAIRRSREY 174 (294)
T ss_pred HHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecc-cccC--CHHHHHHHHHHH
Confidence 5778899999999999876555666555 4579999999999999876543 444 566 3333 689999998776
Q ss_pred HHHhCCCEEEeCCCCCchHHHHHHHHHc-CCce
Q 026125 180 LKEGGMDAIKLEGGSPSRITAARGIVEA-GIAV 211 (243)
Q Consensus 180 ~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV 211 (243)
. ++|||+|.+||-.. .+-+++++++ ..|+
T Consensus 175 ~-eAGAD~ifi~~~~~--~~ei~~~~~~~~~P~ 204 (294)
T TIGR02319 175 V-AAGADCIFLEAMLD--VEEMKRVRDEIDAPL 204 (294)
T ss_pred H-HhCCCEEEecCCCC--HHHHHHHHHhcCCCe
Confidence 6 69999999998542 3336778776 3465
No 26
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=97.06 E-value=0.0032 Score=56.79 Aligned_cols=107 Identities=20% Similarity=0.183 Sum_probs=72.7
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC--CcEEeeCCCCC-CcCCHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR--PLLVGDLPFGT-YESSTNQAVDTAVR 178 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~--~fvVaDmPfgs-Y~~s~e~Av~nA~R 178 (243)
+-+.+-.+++|+..|.+-|. -.|++....++.|||+...++++++... -||++=..--. .....+++++-+..
T Consensus 88 ~~tv~~~~~aG~agi~IEDq----~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~a 163 (238)
T PF13714_consen 88 ARTVRELERAGAAGINIEDQ----RCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKA 163 (238)
T ss_dssp HHHHHHHHHCT-SEEEEESB----STTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEeecc----ccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHH
Confidence 34667788999999999999 4456778889999999999999987754 45554333211 12367999999877
Q ss_pred HHHHhCCCEEEeCCCCCchHHHHHHHH-HcCCceeecc
Q 026125 179 ILKEGGMDAIKLEGGSPSRITAARGIV-EAGIAVMGHV 215 (243)
Q Consensus 179 l~keaGAdaVKLEGg~~~~~~~i~~L~-~~GIPV~GHi 215 (243)
.. ++|||+|.++|-.. ..+ ++.++ +-+.|++-..
T Consensus 164 Y~-eAGAD~ifi~~~~~-~~~-i~~~~~~~~~Pl~v~~ 198 (238)
T PF13714_consen 164 YA-EAGADMIFIPGLQS-EEE-IERIVKAVDGPLNVNP 198 (238)
T ss_dssp HH-HTT-SEEEETTSSS-HHH-HHHHHHHHSSEEEEET
T ss_pred HH-HcCCCEEEeCCCCC-HHH-HHHHHHhcCCCEEEEc
Confidence 66 69999999999864 233 34444 3467776544
No 27
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=97.00 E-value=0.007 Score=54.72 Aligned_cols=87 Identities=20% Similarity=0.181 Sum_probs=61.3
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE--eeCC------------CCCCcCCHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV--GDLP------------FGTYESSTN 170 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV--aDmP------------fgsY~~s~e 170 (243)
++-+.++|++.|-+-|.. |++...++++++. -+|+ .|+- |+--....+
T Consensus 95 ~~~l~~aGa~gv~iED~~----------------~~~~~i~ai~~a~--i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~ 156 (240)
T cd06556 95 AKTFMRAGAAGVKIEGGE----------------WHIETLQMLTAAA--VPVIAHTGLTPQSVNTSGGDEGQYRGDEAGE 156 (240)
T ss_pred HHHHHHcCCcEEEEcCcH----------------HHHHHHHHHHHcC--CeEEEEeCCchhhhhccCCceeeccCHHHHH
Confidence 555677999999998863 6777778887654 3455 5651 221123467
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc-CCceee
Q 026125 171 QAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMG 213 (243)
Q Consensus 171 ~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~G 213 (243)
++++-|..+. ++|||+|.+|+-. .+.+++++++ .|||.|
T Consensus 157 ~ai~Ra~ay~-~AGAd~i~~e~~~---~e~~~~i~~~~~~P~~~ 196 (240)
T cd06556 157 QLIADALAYA-PAGADLIVMECVP---VELAKQITEALAIPLAG 196 (240)
T ss_pred HHHHHHHHHH-HcCCCEEEEcCCC---HHHHHHHHHhCCCCEEE
Confidence 8888886665 7999999999762 3447788876 789987
No 28
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=96.97 E-value=0.008 Score=55.24 Aligned_cols=96 Identities=22% Similarity=0.334 Sum_probs=66.9
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE-----E--eeCCCCCCc---CC---HH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL-----V--GDLPFGTYE---SS---TN 170 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv-----V--aDmPfgsY~---~s---~e 170 (243)
..++.+++|++.|-+-|+ +||....+++++. ..|++ . .|--+|+|. .+ .+
T Consensus 99 a~r~~~~aGa~aVkiEdg----------------~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~ 161 (264)
T PRK00311 99 AGRLMKEAGAHAVKLEGG----------------EEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAE 161 (264)
T ss_pred HHHHHHHhCCeEEEEcCc----------------HHHHHHHHHHHHC-CCCEeeeecccceeecccCCeeeecCCHHHHH
Confidence 467778899999988875 4788888887753 44532 1 232334441 22 34
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc-CCceeeccCCcccc
Q 026125 171 QAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTPQA 221 (243)
Q Consensus 171 ~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~GHiGLtPQ~ 221 (243)
++++.|..+. ++||++|.+|+-.. .++++++++ .||++| ||=-|..
T Consensus 162 ~~i~ra~a~~-eAGA~~i~lE~v~~---~~~~~i~~~l~iP~ig-iGaG~~~ 208 (264)
T PRK00311 162 KLLEDAKALE-EAGAFALVLECVPA---ELAKEITEALSIPTIG-IGAGPDC 208 (264)
T ss_pred HHHHHHHHHH-HCCCCEEEEcCCCH---HHHHHHHHhCCCCEEE-eccCCCC
Confidence 7888886655 79999999999853 457888776 799999 7766653
No 29
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.97 E-value=0.016 Score=54.04 Aligned_cols=103 Identities=18% Similarity=0.250 Sum_probs=76.1
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHcccCC-CcEE---eeCCCCCCcCCHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKR-PLLV---GDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga~~-~fvV---aDmPfgsY~~s~e~Av~nA~Rl 179 (243)
.+-.+++|+-.|.+-|...----|+... ..++.|||+...++++.+... .|+| .|--. . ...++|++-+.+.
T Consensus 99 V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~-~--~g~deAI~Ra~aY 175 (292)
T PRK11320 99 VKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALA-V--EGLDAAIERAQAY 175 (292)
T ss_pred HHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCccc-c--cCHHHHHHHHHHH
Confidence 5678899999999999886555677644 567999999999999887643 3444 45432 2 2589999998776
Q ss_pred HHHhCCCEEEeCCCCCchHHHHHHHHHc-CCceee
Q 026125 180 LKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMG 213 (243)
Q Consensus 180 ~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~G 213 (243)
. ++|||+|.+||-.. .+.+++++++ ..|++.
T Consensus 176 ~-eAGAD~ifi~~~~~--~~~i~~~~~~~~~Pl~~ 207 (292)
T PRK11320 176 V-EAGADMIFPEAMTE--LEMYRRFADAVKVPILA 207 (292)
T ss_pred H-HcCCCEEEecCCCC--HHHHHHHHHhcCCCEEE
Confidence 6 69999999998653 3336777763 567743
No 30
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=96.90 E-value=0.017 Score=52.18 Aligned_cols=97 Identities=18% Similarity=0.251 Sum_probs=77.7
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
++.+|-+..+....+.|--|-....+..|.++|+|+|- .++.||-+......|.=..+.+.+++ ...+||+-
T Consensus 115 ~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~IG------TTLsGYT~~~~~~~~pDf~lvk~l~~--~~~~vIAE 186 (229)
T COG3010 115 DLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDIIG------TTLSGYTGYTEKPTEPDFQLVKQLSD--AGCRVIAE 186 (229)
T ss_pred hHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEEe------cccccccCCCCCCCCCcHHHHHHHHh--CCCeEEee
Confidence 89999888888899999999999999999999999973 35678888555555555777788877 45668876
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
|-| .||++| .+.+ +.||++|-.-|.
T Consensus 187 ---Gr~-~tP~~A----k~a~-~~Ga~aVvVGsA 211 (229)
T COG3010 187 ---GRY-NTPEQA----KKAI-EIGADAVVVGSA 211 (229)
T ss_pred ---CCC-CCHHHH----HHHH-HhCCeEEEECcc
Confidence 567 589998 6677 689999988444
No 31
>KOG1260 consensus Isocitrate lyase [Energy production and conversion]
Probab=96.89 E-value=0.004 Score=61.24 Aligned_cols=106 Identities=20% Similarity=0.243 Sum_probs=66.6
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE-eCcchhhhhccC--CCCc---cCCHHHHHHHHHHHHcccC-----
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAMVVHGH--DTTL---PITLEEMLVHCRAVARGAK----- 152 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL-VGDSlgmv~lG~--~dT~---~vTldeMi~h~~aV~Rga~----- 152 (243)
|++-+.+|...--++++|+.+|....++|.+.++ .|=-.+.+..|- ||-. --|.-++..+......-.+
T Consensus 57 lr~~~n~gtvs~t~Ga~dpvq~sq~~r~gl~~iyiSG~~cs~~~~~~~~pD~adyP~dtvP~~v~rif~~q~~h~r~q~~ 136 (492)
T KOG1260|consen 57 LREHHNEGTVSDTLGAKDPVQASQMARAGLSAIYISGWQCSATLSGKLGPDRADYPYDTVPESVERIFKSQLIHDRKQIE 136 (492)
T ss_pred HHHhccCCcccccccccCchhHHHHHHhcCCeEEeechhhhhhhccCCCCccccCCCcCCHHHHHHHHHHhhhcchhhhh
Confidence 4555556665558899999999999999999884 554444444444 4422 2233344433332222111
Q ss_pred ------------CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 153 ------------RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 153 ------------~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
.| ||+|-.. +| .++....+.+..++ |+||.+|+|||-
T Consensus 137 ~~~i~~~~~dyl~P-IIaDad~-G~-G~atnv~k~~K~fI-eaGaAGIhleDq 185 (492)
T KOG1260|consen 137 AGSIKAEESDYLIP-IIADADA-GF-GGATNVFKTVKGFI-EAGAAGIHLEDQ 185 (492)
T ss_pred hccccccccccccc-eeecCCC-CC-chHHHHHHHHHHHH-Hcccceeeeehh
Confidence 34 6644333 34 35677788888888 699999999986
No 32
>COG2224 AceA Isocitrate lyase [Energy production and conversion]
Probab=96.87 E-value=0.0025 Score=61.96 Aligned_cols=107 Identities=15% Similarity=0.160 Sum_probs=69.0
Q ss_pred HHHhhhC---CCcEEEEecCCHHHHHHHHHcCCCEEEeCcc-hh--hhhcc--CCCCccCCHHHHHHHHHHHHc------
Q 026125 84 LRQKHKN---GEPITMVTAYDYPSAVHLDSAGIDICLVGDS-AA--MVVHG--HDTTLPITLEEMLVHCRAVAR------ 149 (243)
Q Consensus 84 Lr~~kk~---g~~ItmlTAYD~~sA~iae~AGiDiILVGDS-lg--mv~lG--~~dT~~vTldeMi~h~~aV~R------ 149 (243)
|.++.++ +..+..++|||...|.-..+||++.|.++.+ ++ ...-| |||-..-.++-.-.-++.|-+
T Consensus 54 l~~ll~e~~~~~~~~tlGal~g~qa~Q~~kagl~aiYlSGWqvaa~~n~~~~~~PDqs~Yp~~sVP~~V~rI~~al~~aD 133 (433)
T COG2224 54 LWELLHELFKEKYVNTLGALTGGQAVQMAKAGIKAIYLSGWQVAADANLAGEMYPDQSLYPANSVPDVVKRINNALRRAD 133 (433)
T ss_pred HHHHHHHhccccchhccccCCHHHHHHHHHhhhheEEeccceeeccccccCCCCCCcccCccccccHHHHHHHHHHHHHH
Confidence 4444444 8899999999999999999999999954433 33 23333 555544444333222222221
Q ss_pred ------ccC---------CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 150 ------GAK---------RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 150 ------ga~---------~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
+.. ..+||+|-.- +| .++..+.+-+.+++ |+||.+|++||-
T Consensus 134 ~~q~~~~~~~~~~~~~Dy~~PIiADada-Gf-Gg~~~~~~L~K~~I-EaGaagiH~EDQ 189 (433)
T COG2224 134 QIQWSEGKGPGDRQAVDYFLPIVADAEA-GF-GGPLNAFELMKAMI-EAGAAGVHFEDQ 189 (433)
T ss_pred HHHHHhccccccccccccccceeecccc-CC-CchHHHHHHHHHHH-HhCCceeehhhh
Confidence 111 2357866554 45 36678888888888 799999999976
No 33
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=96.66 E-value=0.014 Score=53.28 Aligned_cols=88 Identities=25% Similarity=0.360 Sum_probs=62.9
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE-----E--eeCCCCCCc---CC---HHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL-----V--GDLPFGTYE---SS---TNQ 171 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv-----V--aDmPfgsY~---~s---~e~ 171 (243)
.++.+++|++.|-+-|+ +||....+++++.- .|++ . .|.-+++|. .+ .++
T Consensus 97 ~r~~~~aGa~aVkiEd~----------------~~~~~~I~al~~ag-ipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~ 159 (254)
T cd06557 97 ARLMKEAGADAVKLEGG----------------AEVAETIRALVDAG-IPVMGHIGLTPQSVNQLGGYKVQGKTEEEAER 159 (254)
T ss_pred HHHHHHhCCeEEEEcCc----------------HHHHHHHHHHHHcC-CCeeccccccceeeeccCCceeccCCHHHHHH
Confidence 57788899999998876 48888888887533 4422 1 343445552 23 367
Q ss_pred HHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc-CCceee
Q 026125 172 AVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMG 213 (243)
Q Consensus 172 Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~G 213 (243)
+++-|..+. ++||++|.+|+=.. ..++.++++ .||++|
T Consensus 160 ~i~ra~a~~-~AGA~~i~lE~v~~---~~~~~i~~~v~iP~ig 198 (254)
T cd06557 160 LLEDALALE-EAGAFALVLECVPA---ELAKEITEALSIPTIG 198 (254)
T ss_pred HHHHHHHHH-HCCCCEEEEcCCCH---HHHHHHHHhCCCCEEE
Confidence 788876665 79999999999853 357888876 799997
No 34
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=96.63 E-value=0.02 Score=52.07 Aligned_cols=121 Identities=26% Similarity=0.287 Sum_probs=95.1
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCCEEEeC--cchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCC
Q 026125 91 GEPITMVTAYDYPSAVHLDSAGIDICLVG--DSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESS 168 (243)
Q Consensus 91 g~~ItmlTAYD~~sA~iae~AGiDiILVG--DSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s 168 (243)
+-| +++.+-|+..=-.+-+||.|+|=+| ||+ |+.....+.+|++.-++..|.-.|+.++.+-.|+ .. .
T Consensus 61 ~lP-ICVSaVep~~f~~aV~AGAdliEIGNfDsF------Y~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPH-iL--~ 130 (242)
T PF04481_consen 61 NLP-ICVSAVEPELFVAAVKAGADLIEIGNFDSF------YAQGRRFSAEEVLALTRETRSLLPDITLSVTVPH-IL--P 130 (242)
T ss_pred CCC-eEeecCCHHHHHHHHHhCCCEEEecchHHH------HhcCCeecHHHHHHHHHHHHHhCCCCceEEecCc-cc--c
Confidence 344 6788889888888889999999998 466 7888889999999999999999999999999999 43 6
Q ss_pred HHHHHHHHHHHHHHhCCCEEEeCCCCCchH------HHHHH----------HH-HcCCceeeccCCccccc
Q 026125 169 TNQAVDTAVRILKEGGMDAIKLEGGSPSRI------TAARG----------IV-EAGIAVMGHVGLTPQAI 222 (243)
Q Consensus 169 ~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~------~~i~~----------L~-~~GIPV~GHiGLtPQ~~ 222 (243)
.++=++-|.+|.+ .|||.|+-|||....+ ..|+. |. .-.|||+.-=||..=++
T Consensus 131 ld~Qv~LA~~L~~-~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT~ 200 (242)
T PF04481_consen 131 LDQQVQLAEDLVK-AGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVTA 200 (242)
T ss_pred HHHHHHHHHHHHH-hCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhhH
Confidence 7888899999885 8999999999943211 11211 11 23589998888875443
No 35
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=96.29 E-value=0.038 Score=49.46 Aligned_cols=78 Identities=24% Similarity=0.279 Sum_probs=60.8
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC-CCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG-TYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg-sY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.++++|+|.+++-- |.....+-++++.|.++|+++++.|+++=|.|.. ++..+++.. .++.+-
T Consensus 84 ~a~~a~~~Gad~v~v~p---------P~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~----~~L~~~ 150 (281)
T cd00408 84 LARHAEEAGADGVLVVP---------PYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETI----ARLAEH 150 (281)
T ss_pred HHHHHHHcCCCEEEECC---------CcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHH----HHHhcC
Confidence 46788999999998752 3344467899999999999999999999999963 465677766 455544
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
-...+||.+.+.
T Consensus 151 ~~v~giK~s~~d 162 (281)
T cd00408 151 PNIVGIKDSSGD 162 (281)
T ss_pred CCEEEEEeCCCC
Confidence 578999998864
No 36
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=96.23 E-value=0.035 Score=50.35 Aligned_cols=77 Identities=22% Similarity=0.219 Sum_probs=58.7
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.++++|+|.+++-- |.....+-++++.|.+.|++.++.|+++-|.|. .++..+++.. .++.+.
T Consensus 85 ~a~~a~~~Gad~v~v~p---------P~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l----~~L~~~ 151 (285)
T TIGR00674 85 LTKFAEDVGADGFLVVT---------PYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETV----KRLAEE 151 (285)
T ss_pred HHHHHHHcCCCEEEEcC---------CcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHH----HHHHcC
Confidence 57888999999998752 334445679999999999999999999999994 4666676655 466654
Q ss_pred hCCCEEEeCCC
Q 026125 183 GGMDAIKLEGG 193 (243)
Q Consensus 183 aGAdaVKLEGg 193 (243)
....+||-..+
T Consensus 152 ~~v~giK~s~~ 162 (285)
T TIGR00674 152 PNIVAIKEATG 162 (285)
T ss_pred CCEEEEEeCCC
Confidence 56778886555
No 37
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=96.06 E-value=0.047 Score=49.14 Aligned_cols=78 Identities=19% Similarity=0.251 Sum_probs=59.9
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.++++|+|.+++. .|...+.+-++++.|.+.|+.+++.|+++-|.|. .++..+++.. .++.+.
T Consensus 87 ~a~~a~~~G~d~v~~~---------~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~----~~L~~~ 153 (284)
T cd00950 87 LTKRAEKAGADAALVV---------TPYYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETV----LRLAEH 153 (284)
T ss_pred HHHHHHHcCCCEEEEc---------ccccCCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHH----HHHhcC
Confidence 4688899999999876 2334455679999999999999999999999995 4555676655 456655
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
-.+.+||...+.
T Consensus 154 p~v~giK~s~~~ 165 (284)
T cd00950 154 PNIVGIKEATGD 165 (284)
T ss_pred CCEEEEEECCCC
Confidence 678899976653
No 38
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.03 E-value=0.082 Score=46.92 Aligned_cols=97 Identities=21% Similarity=0.274 Sum_probs=62.0
Q ss_pred CCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 78 ~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
+.|+.+|-+..+..-.+.|--+.++..|..++++|+|+|.+ .+.||-.-..=.-.+ +...+.+++. +.| ||
T Consensus 78 p~~l~~li~~i~~~~~l~MADist~ee~~~A~~~G~D~I~T------TLsGYT~~t~~~~pD-~~lv~~l~~~-~~p-vI 148 (192)
T PF04131_consen 78 PETLEELIREIKEKYQLVMADISTLEEAINAAELGFDIIGT------TLSGYTPYTKGDGPD-FELVRELVQA-DVP-VI 148 (192)
T ss_dssp SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT-SEEE-------TTTTSSTTSTTSSHH-HHHHHHHHHT-TSE-EE
T ss_pred CcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHcCCCEEEc------ccccCCCCCCCCCCC-HHHHHHHHhC-CCc-Ee
Confidence 37888876654444499999999999999999999999854 355664332222222 4444566653 444 78
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
+. |.| .+||++ .+.+ +.||++|-+ |+
T Consensus 149 aE---Gri-~tpe~a----~~al-~~GA~aVVV-Gs 174 (192)
T PF04131_consen 149 AE---GRI-HTPEQA----AKAL-ELGAHAVVV-GS 174 (192)
T ss_dssp EE---SS---SHHHH----HHHH-HTT-SEEEE--H
T ss_pred ec---CCC-CCHHHH----HHHH-hcCCeEEEE-Cc
Confidence 87 466 489999 6788 599999988 55
No 39
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=96.01 E-value=0.059 Score=49.00 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=59.7
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCC-CCCcCCHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPF-GTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~ 180 (243)
-.|+.++++|+|.+++--. .....+-++++.|.+.|++++ +.|+++-|.|. .++..+++.. .+|.
T Consensus 87 ~~a~~a~~~Gad~v~~~~P---------~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~----~~L~ 153 (288)
T cd00954 87 ELAKHAEELGYDAISAITP---------FYYKFSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQF----LELF 153 (288)
T ss_pred HHHHHHHHcCCCEEEEeCC---------CCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHH----HHHh
Confidence 3567889999999986522 223356799999999999999 79999999994 5665677655 4555
Q ss_pred HHhCCCEEEeCCCC
Q 026125 181 KEGGMDAIKLEGGS 194 (243)
Q Consensus 181 keaGAdaVKLEGg~ 194 (243)
+--...+||-+.+.
T Consensus 154 ~~pnivgiK~s~~d 167 (288)
T cd00954 154 EIPNVIGVKFTATD 167 (288)
T ss_pred cCCCEEEEEeCCCC
Confidence 43467899998774
No 40
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.88 E-value=0.082 Score=52.57 Aligned_cols=101 Identities=16% Similarity=0.164 Sum_probs=63.9
Q ss_pred HHHHHhhhC--CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCc-cCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 82 THLRQKHKN--GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTL-PITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 82 ~~Lr~~kk~--g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~-~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
..++..++. +-+|.+=++-+...|+.+.++|+|+|.||-.-|........+. ......-++.+..+++..+.| ||+
T Consensus 278 ~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vp-VIa 356 (505)
T PLN02274 278 EMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVP-VIA 356 (505)
T ss_pred HHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCe-EEE
Confidence 445554433 3455555899999999999999999998754443333332221 111222355567777766666 889
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
|=. + .++.++ .+.+ +.||++|.+ |+
T Consensus 357 dGG---I-~~~~di----~kAl-a~GA~~V~v-Gs 381 (505)
T PLN02274 357 DGG---I-SNSGHI----VKAL-TLGASTVMM-GS 381 (505)
T ss_pred eCC---C-CCHHHH----HHHH-HcCCCEEEE-ch
Confidence 854 4 366777 4667 489999988 44
No 41
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=95.87 E-value=0.077 Score=48.13 Aligned_cols=78 Identities=21% Similarity=0.225 Sum_probs=58.5
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.++++|+|.+++- -|.....+-++++.|.++|++.++.|+++-|.|. .++..+++.. .++.+-
T Consensus 88 ~a~~a~~~G~d~v~~~---------pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~----~~L~~~ 154 (292)
T PRK03170 88 LTKFAEKAGADGALVV---------TPYYNKPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETV----ARLAEH 154 (292)
T ss_pred HHHHHHHcCCCEEEEC---------CCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHH----HHHHcC
Confidence 4688899999999875 2333445679999999999999999999999994 4555666544 455543
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
....++|-..+.
T Consensus 155 p~v~giK~s~~d 166 (292)
T PRK03170 155 PNIVGIKEATGD 166 (292)
T ss_pred CCEEEEEECCCC
Confidence 568899976663
No 42
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=95.81 E-value=0.12 Score=49.40 Aligned_cols=124 Identities=22% Similarity=0.348 Sum_probs=76.6
Q ss_pred CCCCHHHHHHh---hhCC--CcEEE----EecC--CHHH-----HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHH
Q 026125 77 QRVTLTHLRQK---HKNG--EPITM----VTAY--DYPS-----AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEM 140 (243)
Q Consensus 77 ~~~tv~~Lr~~---kk~g--~~Itm----lTAY--D~~s-----A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeM 140 (243)
..+|+.++... ..++ .++++ ...| +... +++..++|+|++-+-|+. .++
T Consensus 76 ~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~---------------~~~ 140 (332)
T PLN02424 76 LPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGS---------------PSR 140 (332)
T ss_pred CCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCc---------------HHH
Confidence 35788776542 2455 45444 1235 3333 356688999999655442 356
Q ss_pred HHHHHHHHcccCCCcE----E---eeCCCCCCcC---C---HHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc
Q 026125 141 LVHCRAVARGAKRPLL----V---GDLPFGTYES---S---TNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA 207 (243)
Q Consensus 141 i~h~~aV~Rga~~~fv----V---aDmPfgsY~~---s---~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~ 207 (243)
+...+++. ....|++ + .+.-+|+|.. + .++.++.|.. ++++||.+|-||+-.. .+++.|+++
T Consensus 141 ~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~a-le~AGAf~ivLE~Vp~---~la~~It~~ 215 (332)
T PLN02424 141 VTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALA-LQEAGCFAVVLECVPA---PVAAAITSA 215 (332)
T ss_pred HHHHHHHH-HcCCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHHH-HHHcCCcEEEEcCCcH---HHHHHHHHh
Confidence 66677776 4455644 1 4455677632 2 3355666654 4579999999999864 246667654
Q ss_pred -CCceeeccCCcccc
Q 026125 208 -GIAVMGHVGLTPQA 221 (243)
Q Consensus 208 -GIPV~GHiGLtPQ~ 221 (243)
.||++| ||=-|..
T Consensus 216 l~IPtIG-IGAG~~c 229 (332)
T PLN02424 216 LQIPTIG-IGAGPFC 229 (332)
T ss_pred CCCCEEe-ecCCCCC
Confidence 799999 7765543
No 43
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.81 E-value=0.088 Score=48.31 Aligned_cols=78 Identities=18% Similarity=0.179 Sum_probs=60.0
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCC-CCCcCCHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPF-GTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~k 181 (243)
-|+.++++|+|.+++.= |--.+.+-++++.|.++|++++ +.|+++=|.|. -++..+++.. .|+.+
T Consensus 87 ~a~~A~~~Gad~v~v~p---------P~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l----~~L~~ 153 (294)
T TIGR02313 87 LTKFAEEAGADAAMVIV---------PYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTM----ARLRK 153 (294)
T ss_pred HHHHHHHcCCCEEEEcC---------ccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHH----HHHHh
Confidence 45888999999998763 3334457799999999999999 89999999995 3565666655 45654
Q ss_pred H-hCCCEEEeCCCC
Q 026125 182 E-GGMDAIKLEGGS 194 (243)
Q Consensus 182 e-aGAdaVKLEGg~ 194 (243)
+ -...+||-..|.
T Consensus 154 ~~pnv~giK~ss~d 167 (294)
T TIGR02313 154 DCPNIVGAKESNKD 167 (294)
T ss_pred hCCCEEEEEeCCCC
Confidence 3 578999998774
No 44
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.73 E-value=0.47 Score=42.64 Aligned_cols=96 Identities=22% Similarity=0.209 Sum_probs=57.9
Q ss_pred CCcEEE-EecCCH----HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCC
Q 026125 91 GEPITM-VTAYDY----PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTY 165 (243)
Q Consensus 91 g~~Itm-lTAYD~----~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY 165 (243)
+.|+.. +...|. ..|+.++++|+|+|=+--|--....|. ...-..+.+.+-+++|++.++.| |.+-++. +
T Consensus 98 ~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~--~~~~~~~~~~eiv~~vr~~~~~p-v~vKl~~--~ 172 (289)
T cd02810 98 GQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGR--QLGQDPEAVANLLKAVKAAVDIP-LLVKLSP--Y 172 (289)
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCc--ccccCHHHHHHHHHHHHHccCCC-EEEEeCC--C
Confidence 455443 555544 347788888999994332211111111 12234566667778888877666 5666664 2
Q ss_pred cCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 166 ESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 166 ~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
.+.++..+.|..+. ++|||+|.+-++
T Consensus 173 -~~~~~~~~~a~~l~-~~Gad~i~~~~~ 198 (289)
T cd02810 173 -FDLEDIVELAKAAE-RAGADGLTAINT 198 (289)
T ss_pred -CCHHHHHHHHHHHH-HcCCCEEEEEcc
Confidence 35677777766555 799999998654
No 45
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=95.64 E-value=0.095 Score=48.03 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=59.2
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCC-CCCcCCHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPF-GTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~k 181 (243)
-|+.++++|+|.+++. -|.-.+.+-++++.|.+.|++.+ +.|+++=|.|. .++..+++.. .++.+
T Consensus 88 la~~a~~~Gad~v~v~---------~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i----~~L~~ 154 (290)
T TIGR00683 88 LGKYATELGYDCLSAV---------TPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQF----GELYK 154 (290)
T ss_pred HHHHHHHhCCCEEEEe---------CCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHH----HHHhc
Confidence 4578899999999874 23344567899999999999887 79999999994 4565666655 45554
Q ss_pred HhCCCEEEeCCCC
Q 026125 182 EGGMDAIKLEGGS 194 (243)
Q Consensus 182 eaGAdaVKLEGg~ 194 (243)
.-...+||-..|.
T Consensus 155 ~pnv~giK~s~~d 167 (290)
T TIGR00683 155 NPKVLGVKFTAGD 167 (290)
T ss_pred CCCEEEEEeCCCC
Confidence 4568899988774
No 46
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=95.59 E-value=0.22 Score=45.77 Aligned_cols=93 Identities=23% Similarity=0.222 Sum_probs=64.4
Q ss_pred CHHHHHHhhhCCCcEEE-EecCCHHHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 80 TLTHLRQKHKNGEPITM-VTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 80 tv~~Lr~~kk~g~~Itm-lTAYD~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
|+..-+.+.++| -.++ +++-|...|+.++++|+|++.. |.-+|.- .|..+ .|.+. .|++..+.| |+
T Consensus 112 tv~aa~~L~~~G-f~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg-~Gi~~------~~~I~---~I~e~~~vp-VI 179 (248)
T cd04728 112 TLKAAEILVKEG-FTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSG-QGLLN------PYNLR---IIIERADVP-VI 179 (248)
T ss_pred HHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCC-CCCCC------HHHHH---HHHHhCCCc-EE
Confidence 566666666555 5566 7889999999999999999964 4444422 33322 55554 555555555 78
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
+| |+. .+++++ .+.+ |.|||+|-+-.+
T Consensus 180 ~e---gGI-~tpeda----~~Am-elGAdgVlV~SA 206 (248)
T cd04728 180 VD---AGI-GTPSDA----AQAM-ELGADAVLLNTA 206 (248)
T ss_pred Ee---CCC-CCHHHH----HHHH-HcCCCEEEEChH
Confidence 88 566 488998 5677 699999988655
No 47
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=95.58 E-value=0.16 Score=46.58 Aligned_cols=97 Identities=18% Similarity=0.168 Sum_probs=63.7
Q ss_pred CCHHHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 79 VTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 79 ~tv~~Lr~~kk~-g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
.....+++.++. +.|+++=.+-+...|+.++++|+|.|.|+..-|.. .+..+.+++-+..-.+++.. +.| |+
T Consensus 159 ~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~----~~~g~~~~~~l~~i~~~~~~--~ip-vi 231 (299)
T cd02809 159 LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQ----LDGAPATIDALPEIVAAVGG--RIE-VL 231 (299)
T ss_pred CCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCC----CCCCcCHHHHHHHHHHHhcC--CCe-EE
Confidence 345666666554 57888888888999999999999999876544432 13445556554443333321 234 77
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
+|= +. .+.+++ .+.+ ..|||+|.+-
T Consensus 232 a~G---GI-~~~~d~----~kal-~lGAd~V~ig 256 (299)
T cd02809 232 LDG---GI-RRGTDV----LKAL-ALGADAVLIG 256 (299)
T ss_pred EeC---CC-CCHHHH----HHHH-HcCCCEEEEc
Confidence 774 44 367777 4566 4899999983
No 48
>PRK15063 isocitrate lyase; Provisional
Probab=95.47 E-value=0.17 Score=49.85 Aligned_cols=114 Identities=23% Similarity=0.205 Sum_probs=79.1
Q ss_pred HHHHHHHcCCCEEEeCcchhh-hhccCCCC-ccCCHHHHHHHHHHHHcccC---CCcEE---eeC---------------
Q 026125 104 SAVHLDSAGIDICLVGDSAAM-VVHGHDTT-LPITLEEMLVHCRAVARGAK---RPLLV---GDL--------------- 160 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgm-v~lG~~dT-~~vTldeMi~h~~aV~Rga~---~~fvV---aDm--------------- 160 (243)
..+..+++|+-.|-+-|.+.. --.|+-+. ..|+.+||+...++++.+.+ .+|+| .|-
T Consensus 166 ~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~~d~rD~ 245 (428)
T PRK15063 166 LMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSDVDERDR 245 (428)
T ss_pred HHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCcccccccccccccccc
Confidence 367788999999999999752 33466655 48999999999999987653 23444 354
Q ss_pred CCC----------CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc---CCc--eeeccCCcccc
Q 026125 161 PFG----------TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA---GIA--VMGHVGLTPQA 221 (243)
Q Consensus 161 Pfg----------sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~---GIP--V~GHiGLtPQ~ 221 (243)
||. -|....++|++-+.... + |||+|.+|.+...... ++.++++ -+| ++.. |.+|..
T Consensus 246 ~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa-~-GAD~iw~Et~~~d~ee-~~~fa~~v~~~~P~~~lay-n~sPsf 317 (428)
T PRK15063 246 PFITGERTAEGFYRVKAGIEQAIARGLAYA-P-YADLIWCETSTPDLEE-ARRFAEAIHAKFPGKLLAY-NCSPSF 317 (428)
T ss_pred ccccCCCccccccccccCHHHHHHHHHHHh-c-CCCEEEeCCCCCCHHH-HHHHHHhhcccCccceeec-CCCCCc
Confidence 121 11235899999998766 5 9999999977554444 5666653 126 5555 888864
No 49
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=95.43 E-value=0.074 Score=49.34 Aligned_cols=100 Identities=22% Similarity=0.261 Sum_probs=61.4
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcc---------hhhhhccCCCCccCCHHHHHHHHHHHHccc
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDS---------AAMVVHGHDTTLPITLEEMLVHCRAVARGA 151 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDS---------lgmv~lG~~dT~~vTldeMi~h~~aV~Rga 151 (243)
+..|+++.++++||+-..+=.-.+|+.+|+.|+|+|++-.| .-..+|-|-|...+++|. .+.|.-.+
T Consensus 4 l~~l~~~i~~~~pIig~gaGtGlsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em----~~eiLp~v 79 (268)
T PF09370_consen 4 LDRLRAQIKAGKPIIGAGAGTGLSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEM----AREILPVV 79 (268)
T ss_dssp HHHHHHHHHTT--EEEEEESSHHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHH----HHHHGGG-
T ss_pred HHHHHHHHhCCCceEEEeeccchhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHH----HHhhhhhc
Confidence 56799999999999999999999999999999999987432 223455666666666643 35555555
Q ss_pred CCCcEEeeC-CCCCCcCCHHHHHHHHHHHHHHhCCCEEE
Q 026125 152 KRPLLVGDL-PFGTYESSTNQAVDTAVRILKEGGMDAIK 189 (243)
Q Consensus 152 ~~~fvVaDm-PfgsY~~s~e~Av~nA~Rl~keaGAdaVK 189 (243)
++..|++.+ ..--| .+.++- .+-+++.|..+|.
T Consensus 80 ~~tPViaGv~atDP~-~~~~~f----l~~lk~~Gf~GV~ 113 (268)
T PF09370_consen 80 KDTPVIAGVCATDPF-RDMDRF----LDELKELGFSGVQ 113 (268)
T ss_dssp SSS-EEEEE-TT-TT---HHHH----HHHHHHHT-SEEE
T ss_pred cCCCEEEEecCcCCC-CcHHHH----HHHHHHhCCceEE
Confidence 544466433 12122 244444 3445677888875
No 50
>PRK00208 thiG thiazole synthase; Reviewed
Probab=95.40 E-value=0.28 Score=45.22 Aligned_cols=93 Identities=24% Similarity=0.244 Sum_probs=63.6
Q ss_pred CHHHHHHhhhCCCcEEE-EecCCHHHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 80 TLTHLRQKHKNGEPITM-VTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 80 tv~~Lr~~kk~g~~Itm-lTAYD~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
|+..-+.+.++| -.++ +++-|...|+.++++|+|+|.. |.-+|.- .|..+ .|++ +.|++..+.| |+
T Consensus 112 tv~aa~~L~~~G-f~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg-~gi~~------~~~i---~~i~e~~~vp-VI 179 (250)
T PRK00208 112 TLKAAEILVKEG-FVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSG-LGLLN------PYNL---RIIIEQADVP-VI 179 (250)
T ss_pred HHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCC-CCCCC------HHHH---HHHHHhcCCe-EE
Confidence 566666665444 5677 8889999999999999999964 3344421 33322 4444 4555544455 77
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
+| ++. .+++++ .+.| |.|||+|-+-.+
T Consensus 180 ve---aGI-~tpeda----~~Am-elGAdgVlV~SA 206 (250)
T PRK00208 180 VD---AGI-GTPSDA----AQAM-ELGADAVLLNTA 206 (250)
T ss_pred Ee---CCC-CCHHHH----HHHH-HcCCCEEEEChH
Confidence 87 566 488998 5667 699999988666
No 51
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.21 E-value=0.28 Score=45.95 Aligned_cols=129 Identities=19% Similarity=0.133 Sum_probs=72.1
Q ss_pred HHHHHhhhCC--CcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCC--CCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 82 THLRQKHKNG--EPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHD--TTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 82 ~~Lr~~kk~g--~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~--dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
..+++.++.. -++.+-++-+...|+.+.++|+|+|.||-+-|....+.. ....-+++ .+..+..+++..+.| |+
T Consensus 124 ~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~-~i~~v~~~~~~~~vp-VI 201 (325)
T cd00381 124 EMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQAT-AVADVAAAARDYGVP-VI 201 (325)
T ss_pred HHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHH-HHHHHHHHHhhcCCc-EE
Confidence 3344444433 344444889999999999999999988533222221111 11112333 344444444444455 67
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC----CchHHHHHHHHHcCCceeeccCCccccccc
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS----PSRITAARGIVEAGIAVMGHVGLTPQAISV 224 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~----~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~ 224 (243)
+| |+. .++.++ .+.+ +.||++|.+ |.. ++.+. ..+...|-..--|.|.-......
T Consensus 202 A~---GGI-~~~~di----~kAl-a~GA~~Vmi-Gt~fa~t~Es~g--~~~~~~g~~~~~~~g~~s~~~~~ 260 (325)
T cd00381 202 AD---GGI-RTSGDI----VKAL-AAGADAVML-GSLLAGTDESPG--EYIEINGKRYKEYRGMGSLGAMK 260 (325)
T ss_pred ec---CCC-CCHHHH----HHHH-HcCCCEEEe-cchhcccccCCC--cEEEECCeeeeeEecccchhhhh
Confidence 76 566 467777 4566 489999999 221 11110 12335677777777766555444
No 52
>PLN02892 isocitrate lyase
Probab=95.19 E-value=0.13 Score=52.07 Aligned_cols=108 Identities=13% Similarity=0.145 Sum_probs=71.1
Q ss_pred HHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhh-----hhccCCCCccCCHHHHHHHHHHH----------
Q 026125 83 HLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAM-----VVHGHDTTLPITLEEMLVHCRAV---------- 147 (243)
Q Consensus 83 ~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgm-----v~lG~~dT~~vTldeMi~h~~aV---------- 147 (243)
-|++..++|.++.-++|.|...|.-..+ |.|.|.|..+.-. +--=+||-..-.++-+-..++.|
T Consensus 69 lL~~~~~~~~~~~t~Galdp~Q~~Qm~k-~l~~iYvSGWq~ss~a~t~~e~~PD~adYP~~tVP~~V~ri~~Aq~~hDr~ 147 (570)
T PLN02892 69 TLKTHQANGTASRTFGALDPVQVAQMAK-HLDTIYVSGWQCSSTATSTNEPGPDLADYPMDTVPNKVEHLFFAQLYHDRK 147 (570)
T ss_pred HHHHhhccCCceeeccCCcHHHHHHHHc-cCceEEechhhhcCccccCCCCCCCcccCccccccHHHHHHHHHHHHHHHH
Confidence 3555556778999999999999998877 9999976553222 22234554444433322222222
Q ss_pred ------------HcccCC----CcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 148 ------------ARGAKR----PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 148 ------------~Rga~~----~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
+.+.+. ..|++|..- +|+ ++.++++++.+++ ++||.+|+|||..
T Consensus 148 q~~~r~~~~~~~r~~~~~~Dyl~PIiADaEt-GyG-~~~~~~~~vk~~i-eaGAaGIhIEDQ~ 207 (570)
T PLN02892 148 QREARMSMSREERARTPYVDYLKPIIADGDT-GFG-GTTATVKLCKLFV-ERGAAGVHIEDQS 207 (570)
T ss_pred HHHHHhccCHHHhcCCCccccccceeeecCC-CCC-ccHHHHHHHHHHH-HcCCeEEEEECCC
Confidence 113331 257899887 785 5666678888888 6999999999963
No 53
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.08 E-value=0.14 Score=47.38 Aligned_cols=116 Identities=15% Similarity=0.141 Sum_probs=74.4
Q ss_pred CCCcEEEEec--CCH----HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCC
Q 026125 90 NGEPITMVTA--YDY----PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPF 162 (243)
Q Consensus 90 ~g~~ItmlTA--YD~----~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPf 162 (243)
+|+.-++.++ .+. -.|+.++++|+|.+++-- |.-.+.+-++++.|.++|++++ +.|+++=|.|-
T Consensus 75 ~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~---------P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~ 145 (309)
T cd00952 75 AGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGR---------PMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPE 145 (309)
T ss_pred CCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECC---------CcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCch
Confidence 4444344544 444 346888999999998752 2234457799999999999999 59999999994
Q ss_pred -CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCcee-eccCCcc
Q 026125 163 -GTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVM-GHVGLTP 219 (243)
Q Consensus 163 -gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~-GHiGLtP 219 (243)
.++..+++.. .+|.+--+..+||-.+........++ ..+.++.|+ |+=.+.|
T Consensus 146 ~tg~~l~~~~l----~~L~~~pnivgiKdssd~~~~~~~i~-~~~~~~~v~~g~d~~l~ 199 (309)
T cd00952 146 AFKFDFPRAAW----AELAQIPQVVAAKYLGDIGALLSDLA-AVKGRMRLLPLEDDYYA 199 (309)
T ss_pred hcCCCCCHHHH----HHHhcCCCEEEEEecCChHHHHHHHH-HcCCCeEEeecchhHHH
Confidence 3555566554 45654457899999873222222222 223477776 4444444
No 54
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=95.01 E-value=0.056 Score=48.89 Aligned_cols=79 Identities=25% Similarity=0.262 Sum_probs=59.8
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC-CCCCcCCHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP-FGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP-fgsY~~s~e~Av~nA~Rl~k 181 (243)
-.|+.++++|+|.+++.- |-....|-++++.|.+.|+..++.|+++=|.| ..++..+++.. .++.+
T Consensus 87 ~~a~~a~~~Gad~v~v~~---------P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l----~~L~~ 153 (289)
T PF00701_consen 87 ELARHAQDAGADAVLVIP---------PYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETL----ARLAK 153 (289)
T ss_dssp HHHHHHHHTT-SEEEEEE---------STSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHH----HHHHT
T ss_pred HHHHHHhhcCceEEEEec---------cccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHH----HHHhc
Confidence 357889999999887652 33446789999999999999999999999999 44555566654 55665
Q ss_pred HhCCCEEEeCCCC
Q 026125 182 EGGMDAIKLEGGS 194 (243)
Q Consensus 182 eaGAdaVKLEGg~ 194 (243)
--...++|.+.+.
T Consensus 154 ~~nv~giK~s~~~ 166 (289)
T PF00701_consen 154 IPNVVGIKDSSGD 166 (289)
T ss_dssp STTEEEEEESSSB
T ss_pred CCcEEEEEcCchh
Confidence 4568899987774
No 55
>PLN02417 dihydrodipicolinate synthase
Probab=94.95 E-value=0.24 Score=45.15 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=63.4
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.++++|+|.+++--. .-...+-++++.|-+.|++.+ |+++-|.|. .++..+++.. .++.+.
T Consensus 88 ~a~~a~~~Gadav~~~~P---------~y~~~~~~~i~~~f~~va~~~--pi~lYn~P~~tg~~l~~~~l----~~l~~~ 152 (280)
T PLN02417 88 ATEQGFAVGMHAALHINP---------YYGKTSQEGLIKHFETVLDMG--PTIIYNVPGRTGQDIPPEVI----FKIAQH 152 (280)
T ss_pred HHHHHHHcCCCEEEEcCC---------ccCCCCHHHHHHHHHHHHhhC--CEEEEEChhHhCcCCCHHHH----HHHhcC
Confidence 356788999999887522 233456799999999999975 988999994 4566676655 455554
Q ss_pred hCCCEEEeCCCCCchHHHHHHHHHcCCcee
Q 026125 183 GGMDAIKLEGGSPSRITAARGIVEAGIAVM 212 (243)
Q Consensus 183 aGAdaVKLEGg~~~~~~~i~~L~~~GIPV~ 212 (243)
-...+||-..|. .. +..+...++.|+
T Consensus 153 pni~giKdss~~---~~-~~~~~~~~~~v~ 178 (280)
T PLN02417 153 PNFAGVKECTGN---DR-VKQYTEKGILLW 178 (280)
T ss_pred CCEEEEEeCCCc---HH-HHHHhcCCeEEE
Confidence 568899987775 23 233555677765
No 56
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.95 E-value=0.31 Score=46.19 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=54.7
Q ss_pred cEEEE-ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHH
Q 026125 93 PITMV-TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQ 171 (243)
Q Consensus 93 ~Itml-TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~ 171 (243)
+++|. ++=++..|+.+.++|+|++.||-.-|....--..+..-.-+-.+...+.+++..+.| |++|= +. .++.+
T Consensus 141 ~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ip-VIAdG---GI-~~~~D 215 (326)
T PRK05458 141 TFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKP-IIADG---GI-RTHGD 215 (326)
T ss_pred CeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCC-EEEeC---CC-CCHHH
Confidence 55666 688999999999999999999855543311100000000000222334444445555 78884 55 47788
Q ss_pred HHHHHHHHHHHhCCCEEEeCC
Q 026125 172 AVDTAVRILKEGGMDAIKLEG 192 (243)
Q Consensus 172 Av~nA~Rl~keaGAdaVKLEG 192 (243)
+ .+.+ +.||++|-+-+
T Consensus 216 i----~KaL-a~GA~aV~vG~ 231 (326)
T PRK05458 216 I----AKSI-RFGATMVMIGS 231 (326)
T ss_pred H----HHHH-HhCCCEEEech
Confidence 7 4667 47999998843
No 57
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=94.91 E-value=0.14 Score=46.62 Aligned_cols=78 Identities=19% Similarity=0.206 Sum_probs=59.3
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.++++|+|.+++-= |.-...+-++++.|.+.|+++++.|+++-|.|. .++..+++.. .+|.+.
T Consensus 91 ~a~~a~~~Gad~v~v~~---------P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l----~~L~~~ 157 (293)
T PRK04147 91 LAKYATELGYDAISAVT---------PFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQF----NELFTL 157 (293)
T ss_pred HHHHHHHcCCCEEEEeC---------CcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHH----HHHhcC
Confidence 46888999999997652 222344679999999999999999999999995 4565676655 355544
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
-...+||.+.+.
T Consensus 158 pnvvgiK~s~~d 169 (293)
T PRK04147 158 PKVIGVKQTAGD 169 (293)
T ss_pred CCEEEEEeCCCC
Confidence 578999998774
No 58
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=94.91 E-value=0.24 Score=45.73 Aligned_cols=122 Identities=17% Similarity=0.210 Sum_probs=73.4
Q ss_pred CCCHHHHHH---hhhC--CCcEEE----EecC-CHHH-----HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHH
Q 026125 78 RVTLTHLRQ---KHKN--GEPITM----VTAY-DYPS-----AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLV 142 (243)
Q Consensus 78 ~~tv~~Lr~---~kk~--g~~Itm----lTAY-D~~s-----A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~ 142 (243)
.+|+.++.. ...+ +.++++ .+.| |... .++.+++|+|.+-+-|+ ++++.
T Consensus 57 ~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~~~e~a~~na~rl~~eaGa~aVkiEgg----------------~~~~~ 120 (263)
T TIGR00222 57 PVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYATPEQALKNAARVMQETGANAVKLEGG----------------EWLVE 120 (263)
T ss_pred CcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCCCHHHHHHHHHHHHHHhCCeEEEEcCc----------------HhHHH
Confidence 577766543 1223 355555 2456 4333 36788899999977764 44555
Q ss_pred HHHHHHcccCCCcE---------E-eeCCCCCCcCC---HHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH-cC
Q 026125 143 HCRAVARGAKRPLL---------V-GDLPFGTYESS---TNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE-AG 208 (243)
Q Consensus 143 h~~aV~Rga~~~fv---------V-aDmPfgsY~~s---~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~-~G 208 (243)
..+++.+ ...|++ + .|-.|.--+.+ .+++++-|..+. ++||+++.+|+-.. ++++.|++ -.
T Consensus 121 ~i~~l~~-~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e-~AGA~~ivlE~vp~---~~a~~It~~l~ 195 (263)
T TIGR00222 121 TVQMLTE-RGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALE-EAGAQLLVLECVPV---ELAAKITEALA 195 (263)
T ss_pred HHHHHHH-CCCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHH-HcCCCEEEEcCCcH---HHHHHHHHhCC
Confidence 5566554 334544 2 22223211223 346777776555 79999999999863 44666754 47
Q ss_pred CceeeccCCcccc
Q 026125 209 IAVMGHVGLTPQA 221 (243)
Q Consensus 209 IPV~GHiGLtPQ~ 221 (243)
||+.| ||=-|..
T Consensus 196 iP~iG-IGaG~~~ 207 (263)
T TIGR00222 196 IPVIG-IGAGNVC 207 (263)
T ss_pred CCEEe-eccCCCC
Confidence 99999 7766543
No 59
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.71 E-value=0.5 Score=46.12 Aligned_cols=88 Identities=14% Similarity=0.145 Sum_probs=58.8
Q ss_pred CcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCC--ccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCH
Q 026125 92 EPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT--LPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST 169 (243)
Q Consensus 92 ~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT--~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~ 169 (243)
-+|.+-.+-++..|+.+.++|+|+|.||-.-|..+-+..-+ +.-+++. +..++.+++..+.| ||+|= ++ .++
T Consensus 195 ~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~lta-i~~v~~~~~~~~vp-VIAdG---GI-~~~ 268 (404)
T PRK06843 195 LDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITA-ICDVYEVCKNTNIC-IIADG---GI-RFS 268 (404)
T ss_pred CcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHH-HHHHHHHHhhcCCe-EEEeC---CC-CCH
Confidence 45667799999999999999999999886554432222111 1113443 44455566666666 78984 55 467
Q ss_pred HHHHHHHHHHHHHhCCCEEEe
Q 026125 170 NQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 170 e~Av~nA~Rl~keaGAdaVKL 190 (243)
+++ .+.+ +.||++|.+
T Consensus 269 ~Di----~KAL-alGA~aVmv 284 (404)
T PRK06843 269 GDV----VKAI-AAGADSVMI 284 (404)
T ss_pred HHH----HHHH-HcCCCEEEE
Confidence 888 4667 589999988
No 60
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=94.68 E-value=1.2 Score=41.21 Aligned_cols=126 Identities=18% Similarity=0.273 Sum_probs=70.3
Q ss_pred hCCCcE-EEEecCCH----HHHHHHHHcCCCEE-E-eCcchhhhhccC-CCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 89 KNGEPI-TMVTAYDY----PSAVHLDSAGIDIC-L-VGDSAAMVVHGH-DTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 89 k~g~~I-tmlTAYD~----~sA~iae~AGiDiI-L-VGDSlgmv~lG~-~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
..+.|+ +.+...|. -.|+.++++|+|.| + .|-....+.-.+ -+...-..+-+..-+++|++.++.|+.+ -+
T Consensus 60 ~~~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~v-Ki 138 (319)
T TIGR00737 60 EDETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTV-KI 138 (319)
T ss_pred CccceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEE-EE
Confidence 445565 67777776 34566778999999 4 453321111111 1111224566777788898888877544 33
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC-------CchHHHHHHHHH-cCCceeeccCC
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-------PSRITAARGIVE-AGIAVMGHVGL 217 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~-------~~~~~~i~~L~~-~GIPV~GHiGL 217 (243)
.- ++..+..+.++.+.+ ++++|+|++-+-+.. ....+.++.+.+ .+|||++==|+
T Consensus 139 r~-g~~~~~~~~~~~a~~-l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI 201 (319)
T TIGR00737 139 RI-GWDDAHINAVEAARI-AEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDI 201 (319)
T ss_pred Ec-ccCCCcchHHHHHHH-HHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCC
Confidence 21 222222344555544 457999999875431 112334555555 36898874443
No 61
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=94.64 E-value=0.66 Score=47.35 Aligned_cols=119 Identities=19% Similarity=0.255 Sum_probs=82.2
Q ss_pred HHHHHHhhhCCCcEEEEe-------cCCHH------HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHH
Q 026125 81 LTHLRQKHKNGEPITMVT-------AYDYP------SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlT-------AYD~~------sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV 147 (243)
+..||+.. .+.++.|+. -.-|+ +.+.+.+.|+|++-|.|++ -.++-|..+.+++
T Consensus 66 l~~~r~~~-pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~l------------nd~~n~~~~i~~~ 132 (596)
T PRK14042 66 LRQLRQAL-PNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDAL------------NDARNLKVAIDAI 132 (596)
T ss_pred HHHHHHhC-CCCceEEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEcccC------------cchHHHHHHHHHH
Confidence 56666664 568888887 23344 7888889999999999988 3567788889999
Q ss_pred HcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-CCceeecc
Q 026125 148 ARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGHV 215 (243)
Q Consensus 148 ~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GHi 215 (243)
++.-.. +.+-+=| +|+--+++..++.|.++. +.|||.|.|-|-.. .+..++++|.++ +|||--|.
T Consensus 133 k~~G~~--~~~~i~yt~sp~~t~e~~~~~ak~l~-~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~H~ 204 (596)
T PRK14042 133 KSHKKH--AQGAICYTTSPVHTLDNFLELGKKLA-EMGCDSIAIKDMAGLLTPTVTVELYAGLKQATGLPVHLHS 204 (596)
T ss_pred HHcCCE--EEEEEEecCCCCCCHHHHHHHHHHHH-HcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcCCEEEEEe
Confidence 874332 2222111 133347888888887766 69999999998743 234556666654 68876663
No 62
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=94.53 E-value=0.53 Score=38.69 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=55.2
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC-CCcCCHHHHHHHHHHHHHHh
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG-TYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg-sY~~s~e~Av~nA~Rl~kea 183 (243)
++.+.+.|+|.|.+.- +++..+.....+.+.+ +++-.... ++ ...+++++.+.+.. +.
T Consensus 19 ~~~~~~~gv~gi~~~g------------------~~i~~~~~~~~~~~~~-v~~~v~~~~~~-~~~~~~~~~a~~a~-~~ 77 (201)
T cd00945 19 CDEAIEYGFAAVCVNP------------------GYVRLAADALAGSDVP-VIVVVGFPTGL-TTTEVKVAEVEEAI-DL 77 (201)
T ss_pred HHHHHHhCCcEEEECH------------------HHHHHHHHHhCCCCCe-EEEEecCCCCC-CcHHHHHHHHHHHH-Hc
Confidence 3455668999987762 5566555444442344 44333332 22 34788988887776 68
Q ss_pred CCCEEEeCCCC--------CchHHHHHHHHHc---CCceeec
Q 026125 184 GMDAIKLEGGS--------PSRITAARGIVEA---GIAVMGH 214 (243)
Q Consensus 184 GAdaVKLEGg~--------~~~~~~i~~L~~~---GIPV~GH 214 (243)
|||+|.+.... +.....++.+.++ ++||+--
T Consensus 78 Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy 119 (201)
T cd00945 78 GADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVI 119 (201)
T ss_pred CCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEE
Confidence 99999986332 1223445677776 9999854
No 63
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=94.51 E-value=0.54 Score=42.69 Aligned_cols=115 Identities=20% Similarity=0.165 Sum_probs=67.4
Q ss_pred CcEEEEecCCH------HHHHHHHHcCCCEEEeCcchhh-hhcc-------CCC-CccCCHHHHHHHHHHHHcc-cCCCc
Q 026125 92 EPITMVTAYDY------PSAVHLDSAGIDICLVGDSAAM-VVHG-------HDT-TLPITLEEMLVHCRAVARG-AKRPL 155 (243)
Q Consensus 92 ~~ItmlTAYD~------~sA~iae~AGiDiILVGDSlgm-v~lG-------~~d-T~~vTldeMi~h~~aV~Rg-a~~~f 155 (243)
-.|.-+|+=|. ..++..+++|+|+|=+|-..+- +.-| ... ...+|+++.+..+++|++- .+.|+
T Consensus 11 ~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~pl 90 (256)
T TIGR00262 11 AFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPI 90 (256)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCE
Confidence 34666677542 2256678899999976632210 0000 000 3467899999999999865 55663
Q ss_pred EEeeCCCCCCcCCH--HHHHHHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHHcCCcee
Q 026125 156 LVGDLPFGTYESST--NQAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVM 212 (243)
Q Consensus 156 vVaDmPfgsY~~s~--e~Av~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~~GIPV~ 212 (243)
+ .++| .|+ .-.+++-.+.++++|+++|-+-|-. ++...+++++.+.|+..+
T Consensus 91 -v----~m~Y-~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i 144 (256)
T TIGR00262 91 -G----LLTY-YNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPI 144 (256)
T ss_pred -E----EEEe-ccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEE
Confidence 2 3355 355 1122222445568999998887754 234455667777786543
No 64
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=94.51 E-value=0.36 Score=44.64 Aligned_cols=119 Identities=18% Similarity=0.279 Sum_probs=81.1
Q ss_pred hCCCcEEEE--ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCC--cEEeeCCCC-
Q 026125 89 KNGEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP--LLVGDLPFG- 163 (243)
Q Consensus 89 k~g~~Itml--TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~--fvVaDmPfg- 163 (243)
+..-|+++= -+.|+.....+=++|++.+..-+|- .+.+|.+..++.|++-+... .+=+|....
T Consensus 72 ~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~------------~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG 139 (281)
T PRK06806 72 QAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSH------------LPLEENIQKTKEIVELAKQYGATVEAEIGRVG 139 (281)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCC------------CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeEC
Confidence 344565543 5678888888889999999887663 47899999999887744321 122332221
Q ss_pred -----------CCcCCHHHHHHHHHHHHHHhCCCEEEe---------CCCCCchHHHHHHHHHc-CCceeecc--CCccc
Q 026125 164 -----------TYESSTNQAVDTAVRILKEGGMDAIKL---------EGGSPSRITAARGIVEA-GIAVMGHV--GLTPQ 220 (243)
Q Consensus 164 -----------sY~~s~e~Av~nA~Rl~keaGAdaVKL---------EGg~~~~~~~i~~L~~~-GIPV~GHi--GLtPQ 220 (243)
+| .+++++ .+++++.|+|.+=+ .+....-.+.++.|.+. +||++.|= |+++.
T Consensus 140 ~~d~~~~~~g~s~-t~~eea----~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e 214 (281)
T PRK06806 140 GSEDGSEDIEMLL-TSTTEA----KRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPE 214 (281)
T ss_pred CccCCccccccee-CCHHHH----HHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHH
Confidence 36 588888 56777789999888 22222334556667654 79999998 89987
Q ss_pred cccc
Q 026125 221 AISV 224 (243)
Q Consensus 221 ~~~~ 224 (243)
....
T Consensus 215 ~~~~ 218 (281)
T PRK06806 215 DFKK 218 (281)
T ss_pred HHHH
Confidence 7643
No 65
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=94.44 E-value=0.62 Score=45.85 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=58.5
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCC-CccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCH
Q 026125 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDT-TLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST 169 (243)
Q Consensus 91 g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~d-T~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~ 169 (243)
+-++.+=++-++..|+.+.++|+|+|-||-+-+....+..- ...++--+.+..+...++..+.+ ||+| |++ .++
T Consensus 269 ~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~-viad---GGi-~~~ 343 (486)
T PRK05567 269 DVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIP-VIAD---GGI-RYS 343 (486)
T ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCe-EEEc---CCC-CCH
Confidence 45888889999999999999999999887544322222211 11123334455455444433444 7888 455 477
Q ss_pred HHHHHHHHHHHHHhCCCEEEe
Q 026125 170 NQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 170 e~Av~nA~Rl~keaGAdaVKL 190 (243)
.++ .+.+ +.|||+|.+
T Consensus 344 ~di----~kAl-a~GA~~v~~ 359 (486)
T PRK05567 344 GDI----AKAL-AAGASAVML 359 (486)
T ss_pred HHH----HHHH-HhCCCEEEE
Confidence 888 4566 589999987
No 66
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.28 E-value=1.9 Score=38.98 Aligned_cols=90 Identities=22% Similarity=0.238 Sum_probs=52.5
Q ss_pred cEEEEecCC----HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCC
Q 026125 93 PITMVTAYD----YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESS 168 (243)
Q Consensus 93 ~ItmlTAYD----~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s 168 (243)
.++-+...| ...|+.++++|+|.|=+--+--+.- +..+...-+.+.+.+.+++|++.++.| |.+-+.. +
T Consensus 92 ~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~-~~g~~~~~~~~~~~eiv~~vr~~~~~P-v~vKl~~-----~ 164 (296)
T cd04740 92 VIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVK-GGGMAFGTDPEAVAEIVKAVKKATDVP-VIVKLTP-----N 164 (296)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCC-CCcccccCCHHHHHHHHHHHHhccCCC-EEEEeCC-----C
Confidence 345555555 3457778889999994421111111 111222245577778888998887666 4555542 1
Q ss_pred HHHHHHHHHHHHHHhCCCEEEe
Q 026125 169 TNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 169 ~e~Av~nA~Rl~keaGAdaVKL 190 (243)
.++..+.|..+. ++|||+|.+
T Consensus 165 ~~~~~~~a~~~~-~~G~d~i~~ 185 (296)
T cd04740 165 VTDIVEIARAAE-EAGADGLTL 185 (296)
T ss_pred chhHHHHHHHHH-HcCCCEEEE
Confidence 234555554444 799999976
No 67
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=94.27 E-value=0.74 Score=40.00 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=58.9
Q ss_pred CCHHHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 79 VTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 79 ~tv~~Lr~~kk~-g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
.++.++.+..++ ....+++.+.+...+..++++|+|+|.++ + .|+...........+..++.++...+.| ++
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d~i~~~-~-----~g~t~~~~~~~~~~~~~i~~i~~~~~iP-vi 177 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFDFIGTT-L-----SGYTEETKKPEEPDFALLKELLKAVGCP-VI 177 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEEcC-C-----ceeecCCCCCCCcCHHHHHHHHHhCCCC-EE
Confidence 456666655444 45556778889999999999999998653 1 1221111011111234556676666666 45
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
+.- +. .+++++ .+++ +.|||+|-+=
T Consensus 178 a~G---GI-~t~~~~----~~~l-~~GadgV~iG 202 (221)
T PRK01130 178 AEG---RI-NTPEQA----KKAL-ELGAHAVVVG 202 (221)
T ss_pred EEC---CC-CCHHHH----HHHH-HCCCCEEEEc
Confidence 542 44 367776 5666 5899999874
No 68
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=94.18 E-value=0.78 Score=44.74 Aligned_cols=98 Identities=19% Similarity=0.201 Sum_probs=60.5
Q ss_pred HHHHhhhC--CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 83 HLRQKHKN--GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 83 ~Lr~~kk~--g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
.+++.++. .-+|.+=++-++..|+.+.++|+|+|-||=+-|.......-+ ..++--+.+..+..+++..+.| |++|
T Consensus 255 ~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vp-viad 333 (450)
T TIGR01302 255 SIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIP-VIAD 333 (450)
T ss_pred HHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCe-EEEe
Confidence 34444333 345555599999999999999999998874333222111100 1111223455566666555555 7888
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
|++ .++.++ .+.+ +.||++|.+
T Consensus 334 ---GGi-~~~~di----~kAl-a~GA~~V~~ 355 (450)
T TIGR01302 334 ---GGI-RYSGDI----VKAL-AAGADAVML 355 (450)
T ss_pred ---CCC-CCHHHH----HHHH-HcCCCEEEE
Confidence 455 367777 4667 589999988
No 69
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=94.15 E-value=1.5 Score=37.70 Aligned_cols=132 Identities=18% Similarity=0.262 Sum_probs=76.0
Q ss_pred hhCCCcE-EEEecCCHH----HHHHHHHcCCCEE-E-eCcchhhhh-ccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 88 HKNGEPI-TMVTAYDYP----SAVHLDSAGIDIC-L-VGDSAAMVV-HGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 88 kk~g~~I-tmlTAYD~~----sA~iae~AGiDiI-L-VGDSlgmv~-lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
...+.|+ ..+...|.. .|+.+.++|+|.| + +|-...+.. -+|-....-..+.+.+.+++|++..+.+ +.++
T Consensus 51 ~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~-v~vk 129 (231)
T cd02801 51 NPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIP-VTVK 129 (231)
T ss_pred CccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCC-EEEE
Confidence 3444444 446667665 7788889999999 3 332211111 1122222335566777888888877755 5666
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------chHHHHHHHHHc-CCceeeccCC-cccccc
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVEA-GIAVMGHVGL-TPQAIS 223 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-------~~~~~i~~L~~~-GIPV~GHiGL-tPQ~~~ 223 (243)
+.. ++... +++.+.+.++ .+.|+|.+.+-+... ...+.++.+.+. .|||++-=|+ +|+.+.
T Consensus 130 ~r~-~~~~~-~~~~~~~~~l-~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~ 199 (231)
T cd02801 130 IRL-GWDDE-EETLELAKAL-EDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDAL 199 (231)
T ss_pred Eee-ccCCc-hHHHHHHHHH-HHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHH
Confidence 655 34222 4666655554 468999997654311 122334556553 7999997666 455443
No 70
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=94.14 E-value=1.4 Score=39.44 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=57.2
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
..++.++++|+|.|++-| + ...|+.. ...+ ...+.+++.++.|++.+ |+. .+++++ .++++.
T Consensus 159 ~~~~~l~~~G~~~iivt~-i--~~~g~~~--g~~~----~~~~~i~~~~~ipvia~----GGi-~s~~di----~~~~~~ 220 (254)
T TIGR00735 159 EWAKEVEKLGAGEILLTS-M--DKDGTKS--GYDL----ELTKAVSEAVKIPVIAS----GGA-GKPEHF----YEAFTK 220 (254)
T ss_pred HHHHHHHHcCCCEEEEeC-c--CcccCCC--CCCH----HHHHHHHHhCCCCEEEe----CCC-CCHHHH----HHHHHc
Confidence 456888999999887744 1 1123321 1223 23456777777775443 245 477777 466765
Q ss_pred hCCCEEEe-----CCCCCchHHHHHHHHHcCCce
Q 026125 183 GGMDAIKL-----EGGSPSRITAARGIVEAGIAV 211 (243)
Q Consensus 183 aGAdaVKL-----EGg~~~~~~~i~~L~~~GIPV 211 (243)
+||++|-+ ||.- ....+.+.|.+.||||
T Consensus 221 g~~dgv~~g~a~~~~~~-~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 221 GKADAALAASVFHYREI-TIGEVKEYLAERGIPV 253 (254)
T ss_pred CCcceeeEhHHHhCCCC-CHHHHHHHHHHCCCcc
Confidence 66999766 5554 3556678899999997
No 71
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=94.00 E-value=1.2 Score=41.93 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=64.9
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe-Cc----------chhhh-hccCCCCccCCHHHHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GD----------SAAMV-VHGHDTTLPITLEEMLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV-GD----------Slgmv-~lG~~dT~~vTldeMi~h~ 144 (243)
+.+|..++.+..+.= ...|+.+.+||||.|-+ |. +..+. --.|-....-.+...++.+
T Consensus 125 ~~mt~~eI~~i~~~f----------~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv 194 (353)
T cd02930 125 RELSEEEIEQTIEDF----------ARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIV 194 (353)
T ss_pred CCCCHHHHHHHHHHH----------HHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHH
Confidence 458888888765421 13677888999999944 31 11110 0001111122255567888
Q ss_pred HHHHcccCCCcEEe------eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 145 RAVARGAKRPLLVG------DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 145 ~aV~Rga~~~fvVa------DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
++|++..+..|.+. |.--+++ +.+++++.+.+|- +.|+|.|.+..|
T Consensus 195 ~aIR~~vG~d~~v~iRi~~~D~~~~g~--~~~e~~~i~~~Le-~~G~d~i~vs~g 246 (353)
T cd02930 195 RAVRAAVGEDFIIIYRLSMLDLVEGGS--TWEEVVALAKALE-AAGADILNTGIG 246 (353)
T ss_pred HHHHHHcCCCceEEEEecccccCCCCC--CHHHHHHHHHHHH-HcCCCEEEeCCC
Confidence 99999887776553 4333344 7899998887765 789999999544
No 72
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=93.91 E-value=2 Score=38.16 Aligned_cols=88 Identities=24% Similarity=0.246 Sum_probs=56.3
Q ss_pred HHHHHHHHcCCCEEEeCc--chhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGD--SAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGD--Slgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
..+..++++|+|.|++-| .-| ...|++ +...+.+++.++.|+ ++-- +. .|.++. .+++
T Consensus 157 ~~~~~~~~~g~~~ii~~~i~~~g-~~~g~d----------~~~i~~~~~~~~ipv-ia~G---Gv-~s~~d~----~~~~ 216 (253)
T PRK02083 157 EWAKEVEELGAGEILLTSMDRDG-TKNGYD----------LELTRAVSDAVNVPV-IASG---GA-GNLEHF----VEAF 216 (253)
T ss_pred HHHHHHHHcCCCEEEEcCCcCCC-CCCCcC----------HHHHHHHHhhCCCCE-EEEC---CC-CCHHHH----HHHH
Confidence 455778889999887643 222 334542 334456667677784 4433 34 367777 3566
Q ss_pred HHhCCCEEEe-----CCCCCchHHHHHHHHHcCCce
Q 026125 181 KEGGMDAIKL-----EGGSPSRITAARGIVEAGIAV 211 (243)
Q Consensus 181 keaGAdaVKL-----EGg~~~~~~~i~~L~~~GIPV 211 (243)
+..||++|-+ ||.-. ...+.+.|.+.||+|
T Consensus 217 ~~~G~~gvivg~al~~~~~~-~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 217 TEGGADAALAASIFHFGEIT-IGELKAYLAEQGIPV 251 (253)
T ss_pred HhCCccEEeEhHHHHcCCCC-HHHHHHHHHHCCCcc
Confidence 5569999987 55543 455567888899997
No 73
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=93.81 E-value=1.9 Score=37.47 Aligned_cols=113 Identities=22% Similarity=0.295 Sum_probs=66.9
Q ss_pred CCcEEEEecCCH-----------HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 91 GEPITMVTAYDY-----------PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 91 g~~ItmlTAYD~-----------~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
+.|+..+..+|+ ..+..+.++|+|+|++..+. +..|+ ..++++++..++. .+ +.+ ++++
T Consensus 60 ~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~----~~~p~--~~~~~~~i~~~~~--~g-~~~-iiv~ 129 (219)
T cd04729 60 DLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATD----RPRPD--GETLAELIKRIHE--EY-NCL-LMAD 129 (219)
T ss_pred CCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCC----CCCCC--CcCHHHHHHHHHH--Hh-CCe-EEEE
Confidence 557665555554 27788889999998875332 11121 1367777765543 23 444 3443
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC-C--------CCchHHHHHHHHHc-CCceeeccCC-ccccccc
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG-G--------SPSRITAARGIVEA-GIAVMGHVGL-TPQAISV 224 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEG-g--------~~~~~~~i~~L~~~-GIPV~GHiGL-tPQ~~~~ 224 (243)
. .|++++ .+.. +.|+|.+.++- | .......++.+.+. +|||++=-|+ +|+.+..
T Consensus 130 v------~t~~ea----~~a~-~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~ 194 (219)
T cd04729 130 I------STLEEA----LNAA-KLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAK 194 (219)
T ss_pred C------CCHHHH----HHHH-HcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHH
Confidence 2 267776 3444 58999998751 1 01112446666653 7999998888 6766554
No 74
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=93.81 E-value=1.6 Score=40.57 Aligned_cols=127 Identities=18% Similarity=0.163 Sum_probs=74.3
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe--Cc---------chhhhh-ccCCCCccCCHHHHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV--GD---------SAAMVV-HGHDTTLPITLEEMLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV--GD---------Slgmv~-lG~~dT~~vTldeMi~h~ 144 (243)
+.+|..++++..+. | ...|+.+.++|+|.|-+ |. ...+.- -.|-....-.++..++.+
T Consensus 142 ~~mt~~eI~~ii~~---------~-~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv 211 (336)
T cd02932 142 RELTREEIAEVVDA---------F-VAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVV 211 (336)
T ss_pred CcCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHH
Confidence 56888888877542 1 24677888999999943 21 111110 011122233445567888
Q ss_pred HHHHcccCCCc-EEeeCCCC---CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC-----------CchHHHHHHHHH-cC
Q 026125 145 RAVARGAKRPL-LVGDLPFG---TYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----------PSRITAARGIVE-AG 208 (243)
Q Consensus 145 ~aV~Rga~~~f-vVaDmPfg---sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~-----------~~~~~~i~~L~~-~G 208 (243)
++|++.++.-| |..++.-. ..+.+.+++++-+.++- +.|+|.|.+-.|. .......+.|.+ -.
T Consensus 212 ~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le-~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~ 290 (336)
T cd02932 212 DAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALK-ELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAG 290 (336)
T ss_pred HHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHH-HcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCC
Confidence 99999885433 55776521 11226888988877665 6899999875431 111233344544 37
Q ss_pred Cceeec
Q 026125 209 IAVMGH 214 (243)
Q Consensus 209 IPV~GH 214 (243)
|||++=
T Consensus 291 iPVi~~ 296 (336)
T cd02932 291 IPVIAV 296 (336)
T ss_pred CCEEEe
Confidence 898864
No 75
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.69 E-value=1 Score=43.24 Aligned_cols=103 Identities=18% Similarity=0.283 Sum_probs=57.7
Q ss_pred HHHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCc-cCCHHHHHHHHHHHHc------ccC
Q 026125 81 LTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTL-PITLEEMLVHCRAVAR------GAK 152 (243)
Q Consensus 81 v~~Lr~~kk~-g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~-~vTldeMi~h~~aV~R------ga~ 152 (243)
..++.+.+++ +-|+..=++.++..|+-+.++|+|.|.+|-.-|...-+...+. .+..-..+..+..+++ +-.
T Consensus 176 ~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~ 255 (368)
T PRK08649 176 PLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGR 255 (368)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCC
Confidence 4445544333 4555443789999999898999999999854443221111110 1232223333333322 111
Q ss_pred CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 153 ~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
...||+|=.+ .+..+. .+.+ ..|||+|.+ |+
T Consensus 256 ~vpVIAdGGI----~~~~di----akAl-alGAd~Vm~-Gs 286 (368)
T PRK08649 256 YVHVIADGGI----GTSGDI----AKAI-ACGADAVML-GS 286 (368)
T ss_pred CCeEEEeCCC----CCHHHH----HHHH-HcCCCeecc-cc
Confidence 2348898544 355666 3556 489999998 44
No 76
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=93.57 E-value=0.79 Score=41.86 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=55.6
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH-H
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK-E 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k-e 182 (243)
.|+.++++|+|.+++-=. .-...+-++++.|.+.|.++++.|+++=|.| ++..+++.. .++.+ -
T Consensus 86 ~a~~a~~~Gad~v~~~pP---------~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~--g~~l~~~~l----~~L~~~~ 150 (289)
T cd00951 86 YAQAAEKAGADGILLLPP---------YLTEAPQEGLYAHVEAVCKSTDLGVIVYNRA--NAVLTADSL----ARLAERC 150 (289)
T ss_pred HHHHHHHhCCCEEEECCC---------CCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHH----HHHHhcC
Confidence 357789999999976311 1223477999999999999999999888844 344566655 46665 2
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
-...+||-..+.
T Consensus 151 pnivgiKds~~d 162 (289)
T cd00951 151 PNLVGFKDGVGD 162 (289)
T ss_pred CCEEEEEeCCCC
Confidence 467899988774
No 77
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=93.46 E-value=0.97 Score=42.39 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=72.1
Q ss_pred EEEEecCCHH----HHHHHHHcCCCEE-E-eCcchhhhh-ccCCCCccCCHHHHHHHHHHHHcccCCCcEE-eeCCCCCC
Q 026125 94 ITMVTAYDYP----SAVHLDSAGIDIC-L-VGDSAAMVV-HGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGTY 165 (243)
Q Consensus 94 ItmlTAYD~~----sA~iae~AGiDiI-L-VGDSlgmv~-lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV-aDmPfgsY 165 (243)
++.+..-|.. .|+.++++|+|.| + .|-....+. -||-+...-..+-+...+++|++.++.|+.+ .=+.+-..
T Consensus 68 ~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~ 147 (333)
T PRK11815 68 ALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQ 147 (333)
T ss_pred EEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCC
Confidence 3455555544 4677788999999 4 443333322 2333344445566777788888877777544 11222222
Q ss_pred cCCHHHHHHHHHHHHHHhCCCEEEeCCCCC---------------chHHHHHHHHHc--CCceeeccCC
Q 026125 166 ESSTNQAVDTAVRILKEGGMDAIKLEGGSP---------------SRITAARGIVEA--GIAVMGHVGL 217 (243)
Q Consensus 166 ~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~---------------~~~~~i~~L~~~--GIPV~GHiGL 217 (243)
.+.+++++.+..+ +++|++++-+-+... ...+.++.+.++ .|||+|==|+
T Consensus 148 -~t~~~~~~~~~~l-~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI 214 (333)
T PRK11815 148 -DSYEFLCDFVDTV-AEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGI 214 (333)
T ss_pred -cCHHHHHHHHHHH-HHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCc
Confidence 2455666666554 479999999875421 113446777775 6999875444
No 78
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=93.43 E-value=2.1 Score=37.87 Aligned_cols=100 Identities=17% Similarity=0.283 Sum_probs=66.1
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE--EeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc--CCCcE
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC--LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA--KRPLL 156 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI--LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga--~~~fv 156 (243)
+.-++++.+.|-++.+-++|+...|.++-+||.|.| .+| .+ --+|.+ .+ +++..+..+.+.. +..++
T Consensus 91 l~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vg-R~--~~~g~d-----g~-~~i~~i~~~~~~~~~~tkil 161 (211)
T cd00956 91 LKAIKKLSEEGIKTNVTAIFSAAQALLAAKAGATYVSPFVG-RI--DDLGGD-----GM-ELIREIRTIFDNYGFDTKIL 161 (211)
T ss_pred HHHHHHHHHcCCceeeEEecCHHHHHHHHHcCCCEEEEecC-hH--hhcCCC-----HH-HHHHHHHHHHHHcCCCceEE
Confidence 667788888899999999999999999999999987 355 21 112332 22 3333334444433 33333
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE 206 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~ 206 (243)
++ |+ .|+.+.+ +.+ ++|||.|++- +++.+.|.+
T Consensus 162 ~A-----s~-r~~~ei~----~a~-~~Gad~vTv~------~~vl~~l~~ 194 (211)
T cd00956 162 AA-----SI-RNPQHVI----EAA-LAGADAITLP------PDVLEQLLK 194 (211)
T ss_pred ec-----cc-CCHHHHH----HHH-HcCCCEEEeC------HHHHHHHhc
Confidence 33 66 5888884 455 4899999996 444565654
No 79
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=93.38 E-value=2 Score=39.03 Aligned_cols=117 Identities=15% Similarity=0.048 Sum_probs=74.3
Q ss_pred HHHHHHhhhCCCcEEEEec---CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHc-ccCCCcE
Q 026125 81 LTHLRQKHKNGEPITMVTA---YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR-GAKRPLL 156 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTA---YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R-ga~~~fv 156 (243)
+..+.+..+.+.++.++.- +|...-..+.++|+|+|-+.+.. -.++++...++.++. |.. +
T Consensus 61 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~~~~------------~~~~~~~~~i~~ak~~G~~---v 125 (266)
T cd07944 61 LRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDMIRVAFHK------------HEFDEALPLIKAIKEKGYE---V 125 (266)
T ss_pred HHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCcCEEEEeccc------------ccHHHHHHHHHHHHHCCCe---E
Confidence 4445444333456655543 34555667788999998777533 257888888777763 332 4
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-C--Cceeec
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-G--IAVMGH 214 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-G--IPV~GH 214 (243)
.+.+.+ ++..+++..++.+.++. +.|++.|.|-|... ....++++|.++ + ||+--|
T Consensus 126 ~~~~~~-a~~~~~~~~~~~~~~~~-~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H 189 (266)
T cd07944 126 FFNLMA-ISGYSDEELLELLELVN-EIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFH 189 (266)
T ss_pred EEEEEe-ecCCCHHHHHHHHHHHH-hCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 455555 33357888877776665 68999999998732 344556666553 3 776655
No 80
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=93.35 E-value=0.97 Score=44.92 Aligned_cols=101 Identities=18% Similarity=0.211 Sum_probs=60.9
Q ss_pred HHHHHHhhhC--CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 81 LTHLRQKHKN--GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 81 v~~Lr~~kk~--g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
+..+++.++. +-+|..=++-+...|+.+.+||+|.|.||=+-|.......-+ ..+.--..+..+..+++..+.| ++
T Consensus 270 ~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~-vI 348 (495)
T PTZ00314 270 IDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVP-CI 348 (495)
T ss_pred HHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCe-EE
Confidence 3455555443 234444488999999999999999998864433222111000 0111123455566666655555 67
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
+| |++ .++.++ .+.+ +.||++|.+=
T Consensus 349 ad---GGi-~~~~di----~kAl-a~GA~~Vm~G 373 (495)
T PTZ00314 349 AD---GGI-KNSGDI----CKAL-ALGADCVMLG 373 (495)
T ss_pred ec---CCC-CCHHHH----HHHH-HcCCCEEEEC
Confidence 77 566 477887 4566 4899999983
No 81
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=93.30 E-value=0.8 Score=39.80 Aligned_cols=96 Identities=20% Similarity=0.201 Sum_probs=58.2
Q ss_pred CHHHHH-HhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 80 TLTHLR-QKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 80 tv~~Lr-~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
++.++. +.++.+....++.+.+...+..+.++|+|.|.+. ..|..-... .+...+ +...+.+++..+.| +++
T Consensus 110 ~~~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~~-~~g~t~~~~-~~~~~~----~~~l~~i~~~~~ip-via 182 (219)
T cd04729 110 TLAELIKRIHEEYNCLLMADISTLEEALNAAKLGFDIIGTT-LSGYTEETA-KTEDPD----FELLKELRKALGIP-VIA 182 (219)
T ss_pred CHHHHHHHHHHHhCCeEEEECCCHHHHHHHHHcCCCEEEcc-Ccccccccc-CCCCCC----HHHHHHHHHhcCCC-EEE
Confidence 455544 4555555677889999999999999999998553 111110000 112222 34566677666666 454
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
.- +. .+++++ .+++ +.|||+|-+=
T Consensus 183 ~G---GI-~~~~~~----~~~l-~~GadgV~vG 206 (219)
T cd04729 183 EG---RI-NSPEQA----AKAL-ELGADAVVVG 206 (219)
T ss_pred eC---CC-CCHHHH----HHHH-HCCCCEEEEc
Confidence 42 34 356666 5666 4789999873
No 82
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=93.23 E-value=2.1 Score=42.98 Aligned_cols=119 Identities=20% Similarity=0.243 Sum_probs=81.8
Q ss_pred HHHHHHhhhCCCcEEEEec---------CC----HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHH
Q 026125 81 LTHLRQKHKNGEPITMVTA---------YD----YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTA---------YD----~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV 147 (243)
+..|++.. .+.+|.|+.= |. -.+-+.+-++|+|++-+.|++.- ++-|....++|
T Consensus 67 lr~lr~~~-~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lnd------------v~nl~~ai~~v 133 (499)
T PRK12330 67 LRTFRKLM-PNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALND------------PRNLEHAMKAV 133 (499)
T ss_pred HHHHHHhC-CCCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCCh------------HHHHHHHHHHH
Confidence 56666654 5578888872 33 23566777889999999998843 36778888888
Q ss_pred HcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc---CCceeecc
Q 026125 148 ARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA---GIAVMGHV 215 (243)
Q Consensus 148 ~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~---GIPV~GHi 215 (243)
++.-... .+.+-| +|..-+++..++.|.++. +.|||.|.|-|-.. .+..++++|.++ +||+--|.
T Consensus 134 k~ag~~~--~~~i~yt~sp~~t~e~~~~~a~~l~-~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~ 207 (499)
T PRK12330 134 KKVGKHA--QGTICYTVSPIHTVEGFVEQAKRLL-DMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHC 207 (499)
T ss_pred HHhCCeE--EEEEEEecCCCCCHHHHHHHHHHHH-HcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 8765533 122211 122348888888888877 69999999998743 244667788776 58887774
No 83
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=93.05 E-value=1.7 Score=41.87 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=60.7
Q ss_pred CcEEEEe-cCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCH
Q 026125 92 EPITMVT-AYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST 169 (243)
Q Consensus 92 ~~ItmlT-AYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~ 169 (243)
.+.++-+ .-++.-|+.+.++|+|.|.||=.-|.++-+..-+ ..+..=..+..|...+++...| |++|=.+ . +.
T Consensus 150 ~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~-VIaDGGI---r-~~ 224 (343)
T TIGR01305 150 EHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGH-IISDGGC---T-CP 224 (343)
T ss_pred CCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCe-EEEcCCc---C-ch
Confidence 4555555 9999999999999999999986666665555444 3334445566666666655555 8899665 2 33
Q ss_pred HHHHHHHHHHHHHhCCCEEEe
Q 026125 170 NQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 170 e~Av~nA~Rl~keaGAdaVKL 190 (243)
-+. .+.+ ..|||+|.+
T Consensus 225 gDI----~KAL-A~GAd~VMl 240 (343)
T TIGR01305 225 GDV----AKAF-GAGADFVML 240 (343)
T ss_pred hHH----HHHH-HcCCCEEEE
Confidence 444 3455 489999988
No 84
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=93.00 E-value=0.98 Score=41.61 Aligned_cols=93 Identities=22% Similarity=0.190 Sum_probs=58.0
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
|+.-=+.+.++|=.+.-.+.-|...|+-.+++||.++.--.|--.+-+|..+. +..+.+++-.+.| ||+|
T Consensus 112 tl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~---------~~l~~i~~~~~vP-vIvD 181 (247)
T PF05690_consen 112 TLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGRGIQNP---------YNLRIIIERADVP-VIVD 181 (247)
T ss_dssp HHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT---SSTH---------HHHHHHHHHGSSS-BEEE
T ss_pred HHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEEecccccccCcCCCCH---------HHHHHHHHhcCCc-EEEe
Confidence 45555567666644444466789999999999999998555555556777763 4556677666777 6778
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
=.. .++.+| ...| |.|||+|-+-
T Consensus 182 AGi----G~pSda----a~AM-ElG~daVLvN 204 (247)
T PF05690_consen 182 AGI----GTPSDA----AQAM-ELGADAVLVN 204 (247)
T ss_dssp S-------SHHHH----HHHH-HTT-SEEEES
T ss_pred CCC----CCHHHH----HHHH-HcCCceeehh
Confidence 755 356777 4567 6999999885
No 85
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=92.89 E-value=1.3 Score=40.43 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=61.1
Q ss_pred HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 026125 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (243)
Q Consensus 106 ~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGA 185 (243)
+.+.++|+|+|-+.+++.- ++.+...++.++..-....+-.++.+.+. .+++..++.+.++. +.||
T Consensus 98 ~~~~~~g~~~iri~~~~~~------------~~~~~~~i~~ak~~G~~v~~~i~~~~~~~-~~~~~~~~~~~~~~-~~Ga 163 (275)
T cd07937 98 EKAAKNGIDIFRIFDALND------------VRNLEVAIKAVKKAGKHVEGAICYTGSPV-HTLEYYVKLAKELE-DMGA 163 (275)
T ss_pred HHHHHcCCCEEEEeecCCh------------HHHHHHHHHHHHHCCCeEEEEEEecCCCC-CCHHHHHHHHHHHH-HcCC
Confidence 3566889999988766633 56677666666432211111246677654 57888877776665 6999
Q ss_pred CEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 186 DAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 186 daVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
+.|.|-|... ....++++|.++ ++|+--|
T Consensus 164 ~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H 198 (275)
T cd07937 164 DSICIKDMAGLLTPYAAYELVKALKKEVGLPIHLH 198 (275)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 9999998743 244556666554 5666655
No 86
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.87 E-value=0.73 Score=42.69 Aligned_cols=87 Identities=21% Similarity=0.221 Sum_probs=62.7
Q ss_pred EEEecCCH----HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCC-cCCH
Q 026125 95 TMVTAYDY----PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTY-ESST 169 (243)
Q Consensus 95 tmlTAYD~----~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY-~~s~ 169 (243)
+-+++.+. .-|+.+++.|+|.|++- =|.-..-+-+++..|-++|+++++.|+++=+-|.-+- ..++
T Consensus 78 aG~g~~~t~eai~lak~a~~~Gad~il~v---------~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~ 148 (299)
T COG0329 78 AGVGSNSTAEAIELAKHAEKLGADGILVV---------PPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSP 148 (299)
T ss_pred EecCCCcHHHHHHHHHHHHhcCCCEEEEe---------CCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCH
Confidence 33555544 34688999999998754 1334455689999999999999999999999996432 2344
Q ss_pred HHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 170 NQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 170 e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
|.. .++.+-....+||-..|.
T Consensus 149 e~i----~~la~~~nivgiKd~~gd 169 (299)
T COG0329 149 ETI----ARLAEHPNIVGVKDSSGD 169 (299)
T ss_pred HHH----HHHhcCCCEEEEEeCCcC
Confidence 444 566653578899998885
No 87
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=92.77 E-value=1.6 Score=41.01 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=71.8
Q ss_pred EEEecCCHH----HHHHHHHcCCCEE-E-eCcchhhhh-ccCCCCccCCHHHHHHHHHHHHcccCCCcEE-eeCCCCCCc
Q 026125 95 TMVTAYDYP----SAVHLDSAGIDIC-L-VGDSAAMVV-HGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGTYE 166 (243)
Q Consensus 95 tmlTAYD~~----sA~iae~AGiDiI-L-VGDSlgmv~-lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV-aDmPfgsY~ 166 (243)
+.+..-|.. .|+.++++|+|.| + .|=....+. -|+-+-+.-..+.+...+++|++..+.|+.+ .-+.+-..
T Consensus 59 vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~- 137 (318)
T TIGR00742 59 LQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPL- 137 (318)
T ss_pred EEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCc-
Confidence 445555543 3666778899998 3 554444322 2334444456666777788898888888544 44444222
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------c--------hHHHHHHHHHc--CCceeec
Q 026125 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSP-------S--------RITAARGIVEA--GIAVMGH 214 (243)
Q Consensus 167 ~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-------~--------~~~~i~~L~~~--GIPV~GH 214 (243)
.+.+++++.+.. ++++|+++|-+.|... . .-..|+.+.++ .|||+|=
T Consensus 138 ~~~~~~~~~~~~-l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~N 201 (318)
T TIGR00742 138 DSYEFLCDFVEI-VSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEIN 201 (318)
T ss_pred chHHHHHHHHHH-HHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEE
Confidence 234666666654 4579999999988742 0 12335666663 6999884
No 88
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=2.2 Score=40.70 Aligned_cols=109 Identities=15% Similarity=0.184 Sum_probs=74.4
Q ss_pred cEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHH
Q 026125 93 PITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQA 172 (243)
Q Consensus 93 ~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~A 172 (243)
+...-.+=+....+.+-++|+|.|.+|-. .-..-+.. ...|.+|+...++-....-...+|..++-. . .+..+.
T Consensus 7 ~ell~pag~l~~l~~ai~~GADaVY~G~~-~~~~R~~a--~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~--~-~~~~~~ 80 (347)
T COG0826 7 PELLAPAGNLEDLKAAIAAGADAVYIGEK-EFGLRRRA--LNFSVEDLAEAVELAHSAGKKVYVAVNTLL--H-NDELET 80 (347)
T ss_pred ceeecCCCCHHHHHHHHHcCCCEEEeCCc-cccccccc--ccCCHHHHHHHHHHHHHcCCeEEEEecccc--c-cchhhH
Confidence 33444555556666777889999999976 22223333 567888887777766555555666677755 2 344555
Q ss_pred HHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcC--Ccee
Q 026125 173 VDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAG--IAVM 212 (243)
Q Consensus 173 v~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~G--IPV~ 212 (243)
+....+.+.+.|+|+|-+-|- -+|..+.+.| +|+.
T Consensus 81 ~~~~l~~l~e~GvDaviv~Dp-----g~i~l~~e~~p~l~ih 117 (347)
T COG0826 81 LERYLDRLVELGVDAVIVADP-----GLIMLARERGPDLPIH 117 (347)
T ss_pred HHHHHHHHHHcCCCEEEEcCH-----HHHHHHHHhCCCCcEE
Confidence 677777777999999998754 3467788888 8874
No 89
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=92.72 E-value=5.7 Score=37.11 Aligned_cols=146 Identities=11% Similarity=0.134 Sum_probs=91.7
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 026125 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 79 ~tv~~-Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~ 152 (243)
++..+ |++.++++--+-..++||+.+++ .||+.+.++|| +..+. .-..| .++.+...+++.++.++
T Consensus 4 v~~k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~-~~~~~-------~~~~~~~~~~~~A~~~~ 75 (286)
T PRK08610 4 VSMKEMLIDAKENGYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGA-ARYMS-------GFYTVVKMVEGLMHDLN 75 (286)
T ss_pred CcHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccH-HhhcC-------cHHHHHHHHHHHHHHcC
Confidence 45555 45566777889999999999985 57888999997 43222 11111 24556666677766665
Q ss_pred --CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCcccccc
Q 026125 153 --RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQAIS 223 (243)
Q Consensus 153 --~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ~~~ 223 (243)
-| |+.-+..|. +.|.. .+.+ ++|...|.+.|+... +..+++.--..||+|=|=||-++..-.
T Consensus 76 ~~vP-V~lHLDHg~---~~e~i----~~ai-~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed 146 (286)
T PRK08610 76 ITIP-VAIHLDHGS---SFEKC----KEAI-DAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQED 146 (286)
T ss_pred CCCC-EEEECCCCC---CHHHH----HHHH-HcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccC
Confidence 35 778887742 44555 4566 489999999888432 234456566799999877777763321
Q ss_pred cccCccccccCHHhhccc
Q 026125 224 VLGGFRPQGKNVTSAVKV 241 (243)
Q Consensus 224 ~~GGykvqGkt~~~A~~l 241 (243)
-..+-...-.+.|+|+++
T Consensus 147 ~~~~~~~~yT~peea~~F 164 (286)
T PRK08610 147 DVVADGIIYADPKECQEL 164 (286)
T ss_pred CCCCcccccCCHHHHHHH
Confidence 100001122567777764
No 90
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=92.59 E-value=1.4 Score=43.71 Aligned_cols=70 Identities=20% Similarity=0.363 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHH
Q 026125 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 100 YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl 179 (243)
.+...|..+-++|+|+|.+- +. +|+... .+...+.+++..+...|++ |+- .|.+++ ..+
T Consensus 241 ~~~~~~~~l~~ag~d~i~id-~a----~G~s~~-------~~~~i~~ik~~~~~~~v~a----G~V-~t~~~a----~~~ 299 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVD-SS----QGNSIY-------QIDMIKKLKSNYPHVDIIA----GNV-VTADQA----KNL 299 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEe-cC----CCCchH-------HHHHHHHHHhhCCCceEEE----CCc-CCHHHH----HHH
Confidence 45678888889999999763 21 333322 2445566777666555666 445 577777 445
Q ss_pred HHHhCCCEEEeC
Q 026125 180 LKEGGMDAIKLE 191 (243)
Q Consensus 180 ~keaGAdaVKLE 191 (243)
+ ++|||+|++-
T Consensus 300 ~-~aGad~I~vg 310 (495)
T PTZ00314 300 I-DAGADGLRIG 310 (495)
T ss_pred H-HcCCCEEEEC
Confidence 5 6999999973
No 91
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=92.56 E-value=1.3 Score=40.42 Aligned_cols=76 Identities=17% Similarity=0.082 Sum_probs=55.6
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH-H
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK-E 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k-e 182 (243)
.|+.++++|+|.+++--. .-...+-++++.|.+.|+.+++.|+++-+.+ ++..+++.. .+|.+ -
T Consensus 91 ~a~~a~~~Gadav~~~pP---------~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~--g~~l~~~~~----~~La~~~ 155 (296)
T TIGR03249 91 IARLAEKAGADGYLLLPP---------YLINGEQEGLYAHVEAVCESTDLGVIVYQRD--NAVLNADTL----ERLADRC 155 (296)
T ss_pred HHHHHHHhCCCEEEECCC---------CCCCCCHHHHHHHHHHHHhccCCCEEEEeCC--CCCCCHHHH----HHHHhhC
Confidence 578889999999876422 2233467999999999999999998887732 444576655 45664 2
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
-...+||-..+.
T Consensus 156 ~nvvgiKds~~d 167 (296)
T TIGR03249 156 PNLVGFKDGIGD 167 (296)
T ss_pred CCEEEEEeCCCC
Confidence 478999987664
No 92
>PRK09875 putative hydrolase; Provisional
Probab=92.54 E-value=5.2 Score=37.24 Aligned_cols=137 Identities=9% Similarity=0.086 Sum_probs=92.1
Q ss_pred CHHHHHHhhh-CCCcEEEEecCCH-----HHHHHHHHcCCCEEE-eCcchhhhhccCCC-CccCCHHHHH-HHHHHHHcc
Q 026125 80 TLTHLRQKHK-NGEPITMVTAYDY-----PSAVHLDSAGIDICL-VGDSAAMVVHGHDT-TLPITLEEML-VHCRAVARG 150 (243)
Q Consensus 80 tv~~Lr~~kk-~g~~ItmlTAYD~-----~sA~iae~AGiDiIL-VGDSlgmv~lG~~d-T~~vTldeMi-~h~~aV~Rg 150 (243)
.+.+|++.++ +++-|+=+|++++ .-++++++.|+.+|. +|.-..-. +|+ ....+.|++. ...+.|..|
T Consensus 36 ~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv~~TG~y~~~~---~p~~~~~~~~e~la~~~i~ei~~G 112 (292)
T PRK09875 36 ICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQDAF---FPEHVATRSVQELAQEMVDEIEQG 112 (292)
T ss_pred HHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEEEcCcCCCCcc---CCHHHhcCCHHHHHHHHHHHHHHh
Confidence 3445555433 5688899999886 468999999999995 77443221 222 2346778875 455677777
Q ss_pred cC----CCcEE--eeCCCCCCcCCHHHHHHHHHHHHHHhCCCE-EEeCCCCCchHHHHHHHHHcCC----ceeeccCCcc
Q 026125 151 AK----RPLLV--GDLPFGTYESSTNQAVDTAVRILKEGGMDA-IKLEGGSPSRITAARGIVEAGI----AVMGHVGLTP 219 (243)
Q Consensus 151 a~----~~fvV--aDmPfgsY~~s~e~Av~nA~Rl~keaGAda-VKLEGg~~~~~~~i~~L~~~GI----PV~GHiGLtP 219 (243)
.. ++=+| .-..++......+.+++.|.+.-++.|+-. ++.+.+. ....+++.|.+.|+ -|+||....+
T Consensus 113 i~gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~~-~g~e~l~il~e~Gvd~~rvvi~H~d~~~ 191 (292)
T PRK09875 113 IDGTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFST-MGLEQLALLQAHGVDLSRVTVGHCDLKD 191 (292)
T ss_pred hccCCCcccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCcEEEcCCCcc-chHHHHHHHHHcCcCcceEEEeCCCCCC
Confidence 65 44344 444444344456679999999999999743 3566554 34556889999999 5889998765
Q ss_pred c
Q 026125 220 Q 220 (243)
Q Consensus 220 Q 220 (243)
.
T Consensus 192 d 192 (292)
T PRK09875 192 N 192 (292)
T ss_pred C
Confidence 4
No 93
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=92.53 E-value=1.3 Score=40.79 Aligned_cols=76 Identities=17% Similarity=0.122 Sum_probs=55.6
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHH-HH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL-KE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~-ke 182 (243)
.|+.++++|+|.+++--. .-...+-++++.|-++|++.++.|+++=|.| ++..+++.. .++. +-
T Consensus 93 ~~~~a~~~Gadav~~~pP---------~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~--g~~l~~~~l----~~L~~~~ 157 (303)
T PRK03620 93 YAQAAERAGADGILLLPP---------YLTEAPQEGLAAHVEAVCKSTDLGVIVYNRD--NAVLTADTL----ARLAERC 157 (303)
T ss_pred HHHHHHHhCCCEEEECCC---------CCCCCCHHHHHHHHHHHHHhCCCCEEEEcCC--CCCCCHHHH----HHHHhhC
Confidence 457788999999977422 1223467899999999999999999888854 455576655 4565 33
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
-...+||-+.+.
T Consensus 158 pni~giK~s~~d 169 (303)
T PRK03620 158 PNLVGFKDGVGD 169 (303)
T ss_pred CCEEEEEeCCCC
Confidence 468899988764
No 94
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=92.46 E-value=3.3 Score=37.35 Aligned_cols=102 Identities=14% Similarity=0.131 Sum_probs=69.9
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE--EeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC--LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI--LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
-+.-++++.++|-++.+-.+|+...|.+|.++|+|.| .+| .+. -.|.+ .++.+...++.+.+-...+=|+
T Consensus 94 Gl~Ai~~L~~~Gi~vn~T~ifs~~Qa~~Aa~aGa~yvsPyvg-Ri~--d~g~D-----~~~~i~~i~~~~~~~~~~tkIL 165 (222)
T PRK12656 94 GLAAIKTLKAEGYHITATAIYTVFQGLLAIEAGADYLAPYYN-RME--NLNID-----SNAVIGQLAEAIDRENSDSKIL 165 (222)
T ss_pred HHHHHHHHHHCCCceEEeeeCCHHHHHHHHHCCCCEEecccc-hhh--hcCCC-----HHHHHHHHHHHHHhcCCCCEEE
Confidence 4777888889999999999999999999999999988 477 221 12333 3444445456665533334344
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHH
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIV 205 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~ 205 (243)
+- |+ .++++. .+.. ++|||.+-+- +++++.|.
T Consensus 166 aA----S~-r~~~~v----~~a~-~~G~d~vTvp------~~vl~~l~ 197 (222)
T PRK12656 166 AA----SF-KNVAQV----NKAF-ALGAQAVTAG------PDVFEAAF 197 (222)
T ss_pred EE----ec-CCHHHH----HHHH-HcCCCEEecC------HHHHHHHh
Confidence 33 77 588888 4555 4899999885 45556663
No 95
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=92.42 E-value=1.1 Score=43.14 Aligned_cols=79 Identities=25% Similarity=0.399 Sum_probs=56.0
Q ss_pred HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 107 iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
-.++||+|++-+- |.=.+-....+.|+++.+.| +|+|.=| .|. .| ...+ +.|+|
T Consensus 42 ~L~~aGceiVRva---------------vp~~~~A~al~~I~~~~~iP-lVADIHF-d~~----lA----l~a~-~~g~d 95 (346)
T TIGR00612 42 ALEEAGCDIVRVT---------------VPDRESAAAFEAIKEGTNVP-LVADIHF-DYR----LA----ALAM-AKGVA 95 (346)
T ss_pred HHHHcCCCEEEEc---------------CCCHHHHHhHHHHHhCCCCC-EEEeeCC-CcH----HH----HHHH-HhccC
Confidence 3567888888542 11112255567899999988 7999988 562 23 4455 57999
Q ss_pred EEEeCCC----CCchHHHHHHHHHcCCce
Q 026125 187 AIKLEGG----SPSRITAARGIVEAGIAV 211 (243)
Q Consensus 187 aVKLEGg----~~~~~~~i~~L~~~GIPV 211 (243)
.+.|--| .+....+++...+.|||+
T Consensus 96 kiRINPGNig~~e~v~~vv~~ak~~~ipI 124 (346)
T TIGR00612 96 KVRINPGNIGFRERVRDVVEKARDHGKAM 124 (346)
T ss_pred eEEECCCCCCCHHHHHHHHHHHHHCCCCE
Confidence 9999876 445667788888999997
No 96
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=92.40 E-value=2.5 Score=42.25 Aligned_cols=69 Identities=20% Similarity=0.372 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE-eeCCCCCCcCCHHHHHHHHHH
Q 026125 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGTYESSTNQAVDTAVR 178 (243)
Q Consensus 100 YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV-aDmPfgsY~~s~e~Av~nA~R 178 (243)
.|...+..+-+||+|+|.+- +. +|+.. .++...+.|++-.|..+|+ +|. .+.++| .+
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD-~~----~g~~~-------~~~~~i~~ik~~~p~~~vi~g~v------~t~e~a----~~ 305 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLD-SS----QGDSI-------YQLEMIKYIKKTYPELDVIGGNV------VTMYQA----QN 305 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEe-CC----CCCcH-------HHHHHHHHHHHhCCCCcEEEecC------CCHHHH----HH
Confidence 56788999999999999873 31 33322 3455567787777766665 564 467777 55
Q ss_pred HHHHhCCCEEEeC
Q 026125 179 ILKEGGMDAIKLE 191 (243)
Q Consensus 179 l~keaGAdaVKLE 191 (243)
++ ++|||+|++-
T Consensus 306 a~-~aGaD~i~vg 317 (505)
T PLN02274 306 LI-QAGVDGLRVG 317 (505)
T ss_pred HH-HcCcCEEEEC
Confidence 66 6999999984
No 97
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=92.39 E-value=1.6 Score=40.68 Aligned_cols=94 Identities=21% Similarity=0.208 Sum_probs=66.2
Q ss_pred CHHHHHHhhhCCCcEEEE-ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 80 TLTHLRQKHKNGEPITMV-TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 80 tv~~Lr~~kk~g~~Itml-TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
|+.-=+.+.++| ..+++ +.-|...|+-.+++||.++.--.|--.+-+|..+ -+..+.|+.-.+.| |+.
T Consensus 126 tl~Aae~Lv~eG-F~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n---------~~~l~~i~e~~~vp-Viv 194 (267)
T CHL00162 126 TLKAAEFLVKKG-FTVLPYINADPMLAKHLEDIGCATVMPLGSPIGSGQGLQN---------LLNLQIIIENAKIP-VII 194 (267)
T ss_pred HHHHHHHHHHCC-CEEeecCCCCHHHHHHHHHcCCeEEeeccCcccCCCCCCC---------HHHHHHHHHcCCCc-EEE
Confidence 455555666665 44555 6678999999999999999754444445667776 36667777776666 777
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
|= +- .+++++ .+.| |.|||+|-+--+
T Consensus 195 dA---GI-gt~sDa----~~Am-ElGaDgVL~nSa 220 (267)
T CHL00162 195 DA---GI-GTPSEA----SQAM-ELGASGVLLNTA 220 (267)
T ss_pred eC---Cc-CCHHHH----HHHH-HcCCCEEeecce
Confidence 74 44 367787 4667 699999988655
No 98
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=92.32 E-value=1.8 Score=40.92 Aligned_cols=128 Identities=20% Similarity=0.188 Sum_probs=74.7
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe--Cc--chhhhhcc----CCCCccCCHH----HHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV--GD--SAAMVVHG----HDTTLPITLE----EMLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV--GD--Slgmv~lG----~~dT~~vTld----eMi~h~ 144 (243)
+.+|..++.+..+. | ...|+.+.+||||.|-+ |. =+...+-- -.|--.=++| -.++..
T Consensus 130 ~~mt~eeI~~ii~~---------f-~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii 199 (337)
T PRK13523 130 VEMTKEQIKETVLA---------F-KQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREII 199 (337)
T ss_pred CcCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHH
Confidence 46888888887542 1 24678889999999943 31 11111000 0111111343 345667
Q ss_pred HHHHcccCCCcEE----eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc----------hHHHHHHHHHc-CC
Q 026125 145 RAVARGAKRPLLV----GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS----------RITAARGIVEA-GI 209 (243)
Q Consensus 145 ~aV~Rga~~~fvV----aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~----------~~~~i~~L~~~-GI 209 (243)
++|++.++.++.+ .|.-.+++ +++++++.+.++- +.|+|.|.+-+|... ....++.+.+. +|
T Consensus 200 ~~ir~~~~~~v~vRis~~d~~~~G~--~~~e~~~i~~~l~-~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~i 276 (337)
T PRK13523 200 DAVKEVWDGPLFVRISASDYHPGGL--TVQDYVQYAKWMK-EQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANI 276 (337)
T ss_pred HHHHHhcCCCeEEEecccccCCCCC--CHHHHHHHHHHHH-HcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCC
Confidence 7888877666444 23333344 6899999887775 689999999887411 12334444443 68
Q ss_pred ceeeccCC
Q 026125 210 AVMGHVGL 217 (243)
Q Consensus 210 PV~GHiGL 217 (243)
||++==++
T Consensus 277 pVi~~G~i 284 (337)
T PRK13523 277 ATGAVGLI 284 (337)
T ss_pred cEEEeCCC
Confidence 98864343
No 99
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=92.27 E-value=3 Score=41.40 Aligned_cols=96 Identities=25% Similarity=0.292 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHH
Q 026125 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 100 YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl 179 (243)
-+...+...-++|+|+|.+ |+. +|++ ..+ +...+.|+...+..+|++| +-.+.|.+ ..+
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~-D~a----~g~~----~~~---~~~i~~i~~~~~~~~vi~g-----~~~t~~~~----~~l 283 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVI-DTA----HGHQ----VKM---ISAIKAVRALDLGVPIVAG-----NVVSAEGV----RDL 283 (475)
T ss_pred cHHHHHHHHHHhCCCEEEE-eCC----CCCc----HHH---HHHHHHHHHHCCCCeEEEe-----ccCCHHHH----HHH
Confidence 4445666677789999877 333 4665 234 4444667666666778883 22566776 456
Q ss_pred HHHhCCCEEEeCCCCCc-----------------hHHHHHHHHHcCCceeeccCC
Q 026125 180 LKEGGMDAIKLEGGSPS-----------------RITAARGIVEAGIAVMGHVGL 217 (243)
Q Consensus 180 ~keaGAdaVKLEGg~~~-----------------~~~~i~~L~~~GIPV~GHiGL 217 (243)
+ ++|||+||+-+|... ..+..+++.+.|+||++.=|+
T Consensus 284 ~-~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi 337 (475)
T TIGR01303 284 L-EAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGV 337 (475)
T ss_pred H-HhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCC
Confidence 6 699999996555211 113344456678999887444
No 100
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=92.24 E-value=1.4 Score=41.54 Aligned_cols=133 Identities=11% Similarity=0.109 Sum_probs=75.4
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeC--c--chhhhhcc----CCCCccCCHH----HHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVG--D--SAAMVVHG----HDTTLPITLE----EMLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVG--D--Slgmv~lG----~~dT~~vTld----eMi~h~ 144 (243)
+.+|..++++..++ | ...|+.|.+||||.|-+- . =+...+-- ..|--.=++| -.++..
T Consensus 132 ~~mt~~eI~~ii~~---------f-~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii 201 (353)
T cd04735 132 RELTHEEIEDIIDA---------F-GEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVV 201 (353)
T ss_pred ccCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHH
Confidence 56888888876542 1 246788999999999432 1 11111000 0111111233 245667
Q ss_pred HHHHcccC----CCcEE-eeCC-----CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCch---------HHH---HH
Q 026125 145 RAVARGAK----RPLLV-GDLP-----FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSR---------ITA---AR 202 (243)
Q Consensus 145 ~aV~Rga~----~~fvV-aDmP-----fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~---------~~~---i~ 202 (243)
++|++.++ ..|.| .-+. .++ .+.++.++.+..+. +.|+|.|.+-+|.... ... ++
T Consensus 202 ~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g--~~~ee~~~i~~~L~-~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik 278 (353)
T cd04735 202 KAVQEVIDKHADKDFILGYRFSPEEPEEPG--IRMEDTLALVDKLA-DKGLDYLHISLWDFDRKSRRGRDDNQTIMELVK 278 (353)
T ss_pred HHHHHHhccccCCCceEEEEECcccccCCC--CCHHHHHHHHHHHH-HcCCCEEEeccCccccccccCCcchHHHHHHHH
Confidence 78888775 44444 3222 233 36788888776655 7899999997652110 122 33
Q ss_pred HHHHcCCceeeccCC-ccccc
Q 026125 203 GIVEAGIAVMGHVGL-TPQAI 222 (243)
Q Consensus 203 ~L~~~GIPV~GHiGL-tPQ~~ 222 (243)
..+..+|||++-=|+ +|+..
T Consensus 279 ~~~~~~iPVi~~Ggi~t~e~a 299 (353)
T cd04735 279 ERIAGRLPLIAVGSINTPDDA 299 (353)
T ss_pred HHhCCCCCEEEECCCCCHHHH
Confidence 333347999987776 56554
No 101
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=92.24 E-value=1.8 Score=40.80 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=63.3
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe----Ccc-------hhhhh-ccCCCCccCCHHHHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV----GDS-------AAMVV-HGHDTTLPITLEEMLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV----GDS-------lgmv~-lG~~dT~~vTldeMi~h~ 144 (243)
+.+|..+|++..+. | ...|+.|.+||+|.|-+ |.= ..+.- -+|-....-.+.-.++..
T Consensus 129 ~~mt~~eI~~ii~~---------f-~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv 198 (343)
T cd04734 129 KAMEEEDIEEIIAA---------F-ADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVL 198 (343)
T ss_pred CcCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHH
Confidence 46899998887542 1 24677788999999943 211 11110 111111222334456778
Q ss_pred HHHHcccCCCcEE-eeCCCCCC---cCCHHHHHHHHHHHHHHhC-CCEEEeCCC
Q 026125 145 RAVARGAKRPLLV-GDLPFGTY---ESSTNQAVDTAVRILKEGG-MDAIKLEGG 193 (243)
Q Consensus 145 ~aV~Rga~~~fvV-aDmPfgsY---~~s~e~Av~nA~Rl~keaG-AdaVKLEGg 193 (243)
++|++.++..|.+ .=+..-.| +.+.+++++.+.++- +.| +|.|.+.+|
T Consensus 199 ~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~-~~G~vd~i~vs~g 251 (343)
T cd04734 199 AAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLA-AEGLIDYVNVSAG 251 (343)
T ss_pred HHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHH-hcCCCCEEEeCCC
Confidence 8999988777644 33332111 136889988876665 577 899999655
No 102
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=92.19 E-value=7.8 Score=35.18 Aligned_cols=104 Identities=20% Similarity=0.191 Sum_probs=61.3
Q ss_pred CHHHHHHhhhC-CC-cEEEEecCCHH----HHHHHHHcC--CCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc
Q 026125 80 TLTHLRQKHKN-GE-PITMVTAYDYP----SAVHLDSAG--IDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA 151 (243)
Q Consensus 80 tv~~Lr~~kk~-g~-~ItmlTAYD~~----sA~iae~AG--iDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga 151 (243)
.+..++..++. +. .++-+...|.. .|+.+++++ +|.|-+-=|--+. -|+.+...-..+.+.+.+++|++..
T Consensus 78 ~~~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~-~~~g~~l~~~~~~~~eiv~~vr~~~ 156 (300)
T TIGR01037 78 FLEELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHV-KGGGIAIGQDPELSADVVKAVKDKT 156 (300)
T ss_pred HHHHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCC-CCCccccccCHHHHHHHHHHHHHhc
Confidence 34555543322 22 34555566633 366666663 8988543221111 2444444456677788889999887
Q ss_pred CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 152 ~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
+.| |.+-++- +.++..+.|.++ +++|+|+|.+-
T Consensus 157 ~~p-v~vKi~~-----~~~~~~~~a~~l-~~~G~d~i~v~ 189 (300)
T TIGR01037 157 DVP-VFAKLSP-----NVTDITEIAKAA-EEAGADGLTLI 189 (300)
T ss_pred CCC-EEEECCC-----ChhhHHHHHHHH-HHcCCCEEEEE
Confidence 666 6777752 335666666554 47999999874
No 103
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=92.15 E-value=2.2 Score=39.02 Aligned_cols=128 Identities=23% Similarity=0.294 Sum_probs=76.6
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE-EeCcchhhhhccC-------------CC----CccCCHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC-LVGDSAAMVVHGH-------------DT----TLPITLE 138 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI-LVGDSlgmv~lG~-------------~d----T~~vTld 138 (243)
+.+|..++.+..+.= ...|+.+.++|+|.| +-+. +|| .| ...-.+.
T Consensus 129 ~~mt~~ei~~~i~~~----------~~aA~~a~~aGfDgveih~~------~gyL~~qFlsp~~n~R~d~yGgs~enr~r 192 (327)
T cd02803 129 REMTKEEIEQIIEDF----------AAAARRAKEAGFDGVEIHGA------HGYLLSQFLSPYTNKRTDEYGGSLENRAR 192 (327)
T ss_pred CcCCHHHHHHHHHHH----------HHHHHHHHHcCCCEEEEcch------hhhHHHHhcCccccCCCcccCCCHHHHHH
Confidence 568999998875421 246778899999998 4321 222 11 1111233
Q ss_pred HHHHHHHHHHcccCCCc-EEeeCCCCCC---cCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc---------------hHH
Q 026125 139 EMLVHCRAVARGAKRPL-LVGDLPFGTY---ESSTNQAVDTAVRILKEGGMDAIKLEGGSPS---------------RIT 199 (243)
Q Consensus 139 eMi~h~~aV~Rga~~~f-vVaDmPfgsY---~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~---------------~~~ 199 (243)
.+++.+++|++..+.-| |.+++.-..+ ..+.+++++.+.++. +.|+|.|.+-++... ...
T Consensus 193 ~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~-~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 271 (327)
T cd02803 193 FLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALE-EAGVDALHVSGGSYESPPPIIPPPYVPEGYFLE 271 (327)
T ss_pred HHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHH-HcCCCEEEeCCCCCcccccccCCCCCCcchhHH
Confidence 35677888888874332 4466653221 136888888887766 689999987555321 112
Q ss_pred HHHHHHHc-CCceeeccCCc-ccc
Q 026125 200 AARGIVEA-GIAVMGHVGLT-PQA 221 (243)
Q Consensus 200 ~i~~L~~~-GIPV~GHiGLt-PQ~ 221 (243)
.++.+.+. +|||++-=|+. |..
T Consensus 272 ~~~~ir~~~~iPVi~~Ggi~t~~~ 295 (327)
T cd02803 272 LAEKIKKAVKIPVIAVGGIRDPEV 295 (327)
T ss_pred HHHHHHHHCCCCEEEeCCCCCHHH
Confidence 33444443 79999876654 443
No 104
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=92.13 E-value=1.6 Score=41.01 Aligned_cols=96 Identities=21% Similarity=0.384 Sum_probs=56.3
Q ss_pred CHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 101 DYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 101 D~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
+...+..+-++|+|+|.+--+ +|.+ +..+...+.+++..|...|++ |+- .+.++| .+++
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~-----~G~~-------~~~~~~i~~ik~~~p~v~Vi~----G~v-~t~~~A----~~l~ 153 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSA-----HGHS-------VYVIEMIKFIKKKYPNVDVIA----GNV-VTAEAA----RDLI 153 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECC-----CCCc-------HHHHHHHHHHHHHCCCceEEE----CCC-CCHHHH----HHHH
Confidence 356677777899999865321 2333 334455566766555445555 344 467777 4555
Q ss_pred HHhCCCEEEeCCCC--------------Cc---hHHHHHHHHHcCCceeeccCCc
Q 026125 181 KEGGMDAIKLEGGS--------------PS---RITAARGIVEAGIAVMGHVGLT 218 (243)
Q Consensus 181 keaGAdaVKLEGg~--------------~~---~~~~i~~L~~~GIPV~GHiGLt 218 (243)
++|||+|++.+|. .. ...+.++..+.+|||++-=|+.
T Consensus 154 -~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~ 207 (325)
T cd00381 154 -DAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIR 207 (325)
T ss_pred -hcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCC
Confidence 6999999984331 00 1233333444589999765554
No 105
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.04 E-value=1.9 Score=42.86 Aligned_cols=88 Identities=17% Similarity=0.158 Sum_probs=57.3
Q ss_pred CcEEEE-ecCCHHHHHHHHHcCCCEEEeCcchhhh--hccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCC
Q 026125 92 EPITMV-TAYDYPSAVHLDSAGIDICLVGDSAAMV--VHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESS 168 (243)
Q Consensus 92 ~~Itml-TAYD~~sA~iae~AGiDiILVGDSlgmv--~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s 168 (243)
...+|. ++=++..|+-+.+||+|+|.||=.-|.. ..++-.-+ +..=+.++.|...++..+.| +|+| |++ .+
T Consensus 268 ~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~-~p~~~av~~~~~~~~~~~~~-via~---ggi-~~ 341 (479)
T PRK07807 268 GVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVG-RPQFSAVLECAAAARELGAH-VWAD---GGV-RH 341 (479)
T ss_pred CCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCc-hhHHHHHHHHHHHHHhcCCc-EEec---CCC-CC
Confidence 345566 8999999999999999999977544332 22322211 12223455555555555555 7888 455 36
Q ss_pred HHHHHHHHHHHHHHhCCCEEEe
Q 026125 169 TNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 169 ~e~Av~nA~Rl~keaGAdaVKL 190 (243)
+.++ .+.+ +.||++|.+
T Consensus 342 ~~~~----~~al-~~ga~~v~~ 358 (479)
T PRK07807 342 PRDV----ALAL-AAGASNVMI 358 (479)
T ss_pred HHHH----HHHH-HcCCCeeec
Confidence 7777 4667 489999987
No 106
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=91.90 E-value=1.4 Score=43.09 Aligned_cols=71 Identities=21% Similarity=0.424 Sum_probs=47.4
Q ss_pred cCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHH
Q 026125 99 AYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVR 178 (243)
Q Consensus 99 AYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~R 178 (243)
..|+..|..+-++|+|+|.|- + .+|+. +.++...+.+++-.+..+|++ |+- .+.+++ ..
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd-~----a~g~~-------~~~~~~i~~i~~~~~~~~vi~----G~v-~t~~~a----~~ 281 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVID-S----SHGHS-------IYVIDSIKEIKKTYPDLDIIA----GNV-ATAEQA----KA 281 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEE-C----CCCcH-------hHHHHHHHHHHHhCCCCCEEE----EeC-CCHHHH----HH
Confidence 367788899999999999873 2 23322 234455566766655555665 344 577877 45
Q ss_pred HHHHhCCCEEEeC
Q 026125 179 ILKEGGMDAIKLE 191 (243)
Q Consensus 179 l~keaGAdaVKLE 191 (243)
++ ++|||+|++-
T Consensus 282 l~-~aGad~i~vg 293 (450)
T TIGR01302 282 LI-DAGADGLRVG 293 (450)
T ss_pred HH-HhCCCEEEEC
Confidence 56 6999999974
No 107
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=91.82 E-value=1.2 Score=41.90 Aligned_cols=90 Identities=18% Similarity=0.253 Sum_probs=55.0
Q ss_pred CHHHHHHhhhC-CCcEEEEecCC-HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 80 TLTHLRQKHKN-GEPITMVTAYD-YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 80 tv~~Lr~~kk~-g~~ItmlTAYD-~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
++.++++-++. .-|+.-..=-+ +-.|.+++++|+|+| | .+..+-..||.++..| +--+.| ++
T Consensus 55 ~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiI---D---------eTe~lrPade~~~~~K---~~f~vp-fm 118 (287)
T TIGR00343 55 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYI---D---------ESEVLTPADWTFHIDK---KKFKVP-FV 118 (287)
T ss_pred CHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEE---E---------ccCCCCcHHHHHHHHH---HHcCCC-EE
Confidence 55555554322 34544443333 889999999999999 4 2333444788776444 333333 56
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEE--EeCCCCCc
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAI--KLEGGSPS 196 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaV--KLEGg~~~ 196 (243)
+|- .|.++|+ |-+ +.|||.| |+|||...
T Consensus 119 ad~------~~l~EAl----rai-~~GadmI~Tt~e~gTg~ 148 (287)
T TIGR00343 119 CGA------RDLGEAL----RRI-NEGAAMIRTKGEAGTGN 148 (287)
T ss_pred ccC------CCHHHHH----HHH-HCCCCEEeccccCCCcc
Confidence 662 4778884 455 4689998 67777653
No 108
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=91.81 E-value=8.2 Score=35.68 Aligned_cols=120 Identities=12% Similarity=0.204 Sum_probs=79.8
Q ss_pred HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEe
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVG 158 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVa 158 (243)
|+..++++--+...++||+.+++ +||+.+.++|+--..-..-..| .++.+...++++++.++ .| |+.
T Consensus 8 l~~A~~~~yav~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~~vp-v~l 79 (282)
T TIGR01859 8 LQKAKKEGYAVGAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMG-------GYKMAVAMVKTLIERMSIVP-VAL 79 (282)
T ss_pred HHHHHHCCceEEEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccC-------cHHHHHHHHHHHHHHCCCCe-EEE
Confidence 55667788899999999999986 4688899999843211111111 14667788888888887 56 667
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCch-------HHHHHHHHHcCCceeeccCCcc
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSR-------ITAARGIVEAGIAVMGHVGLTP 219 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~-------~~~i~~L~~~GIPV~GHiGLtP 219 (243)
-+..+. +.+.. .+.+ ++|.+.|.+.+..... ..+++.....|++|-+=||-.+
T Consensus 80 hlDH~~---~~e~i----~~ai-~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~g 139 (282)
T TIGR01859 80 HLDHGS---SYESC----IKAI-KAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLG 139 (282)
T ss_pred ECCCCC---CHHHH----HHHH-HcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCc
Confidence 776643 23322 4456 4899999998874322 2333334567999997777765
No 109
>PRK08185 hypothetical protein; Provisional
Probab=91.77 E-value=5.7 Score=37.03 Aligned_cols=120 Identities=13% Similarity=0.214 Sum_probs=82.1
Q ss_pred HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
|++.++++--+-..++||..+++ .||+.+.++|+--..-..-..| .++...++.+++-++-| |+.-
T Consensus 5 L~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~---------~~~~~~~~~~a~~~~vP-V~lH 74 (283)
T PRK08185 5 LKVAKEHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLG---------DNFFAYVRERAKRSPVP-FVIH 74 (283)
T ss_pred HHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhcc---------HHHHHHHHHHHHHCCCC-EEEE
Confidence 56667888899999999999986 5788899999743222111122 23667777777777777 6788
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCcccc
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQA 221 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ~ 221 (243)
|..|. +.+.. .+.+ ++|.+.|.+.|.... +..+++..-..||+|-+=||.++..
T Consensus 75 LDHg~---~~e~i----~~ai-~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~ 135 (283)
T PRK08185 75 LDHGA---TIEDV----MRAI-RCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNT 135 (283)
T ss_pred CCCCC---CHHHH----HHHH-HcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCc
Confidence 88842 44444 3455 489999999887432 2233343456799999999887753
No 110
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=91.73 E-value=1.6 Score=39.73 Aligned_cols=90 Identities=18% Similarity=0.115 Sum_probs=62.3
Q ss_pred CCcEEEEecCCHH----HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC-CC
Q 026125 91 GEPITMVTAYDYP----SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG-TY 165 (243)
Q Consensus 91 g~~ItmlTAYD~~----sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg-sY 165 (243)
++.|+-+++.+.. .|+.++++|+|.+++-=.. | ..+.+-+++..|.+.|.+ +.|+++=|.|.. ++
T Consensus 66 ~~vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~------y--~~~~~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~ 135 (279)
T cd00953 66 DKVIFQVGSLNLEESIELARAAKSFGIYAIASLPPY------Y--FPGIPEEWLIKYFTDISS--PYPTFIYNYPKATGY 135 (279)
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCc------C--CCCCCHHHHHHHHHHHHh--cCCEEEEeCccccCC
Confidence 3445555555443 5788999999999865222 1 112356889999999999 899999999963 35
Q ss_pred cCCHHHHHHHHHHHHHH-hCCCEEEeCCCC
Q 026125 166 ESSTNQAVDTAVRILKE-GGMDAIKLEGGS 194 (243)
Q Consensus 166 ~~s~e~Av~nA~Rl~ke-aGAdaVKLEGg~ 194 (243)
..+++.. .|+.++ -...+||-..+.
T Consensus 136 ~l~~~~l----~~L~~~~p~vvgiK~s~~d 161 (279)
T cd00953 136 DINARMA----KEIKKAGGDIIGVKDTNED 161 (279)
T ss_pred CCCHHHH----HHHHhcCCCEEEEEeCccC
Confidence 5676654 567654 478899988774
No 111
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=91.70 E-value=3.2 Score=38.70 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=65.1
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe--Cc---------chhhhh-ccCCCCccCCHHHHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV--GD---------SAAMVV-HGHDTTLPITLEEMLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV--GD---------Slgmv~-lG~~dT~~vTldeMi~h~ 144 (243)
+.+|..+|++..+. | ...|+.+.+||+|.|-+ |- ...+.- --|-....=-+.-.++..
T Consensus 137 ~~mt~~eI~~~i~~---------~-~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI 206 (338)
T cd04733 137 RAMTEEEIEDVIDR---------F-AHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIY 206 (338)
T ss_pred CcCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHH
Confidence 45888888887542 1 24678899999999933 31 111110 001011222344467888
Q ss_pred HHHHcccCCCc-EEeeCCC-----CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 145 RAVARGAKRPL-LVGDLPF-----GTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 145 ~aV~Rga~~~f-vVaDmPf-----gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
++|+++++.-| |..|+.- +++ +.+++++-+.+|- +.|+|.|.+-+|
T Consensus 207 ~aIR~avG~d~~v~vris~~~~~~~g~--~~eea~~ia~~Le-~~Gvd~iev~~g 258 (338)
T cd04733 207 DAIRAAVGPGFPVGIKLNSADFQRGGF--TEEDALEVVEALE-EAGVDLVELSGG 258 (338)
T ss_pred HHHHHHcCCCCeEEEEEcHHHcCCCCC--CHHHHHHHHHHHH-HcCCCEEEecCC
Confidence 99999886543 4577741 344 6888888776655 689999987666
No 112
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=91.64 E-value=2 Score=41.03 Aligned_cols=98 Identities=17% Similarity=0.195 Sum_probs=64.5
Q ss_pred CCCHHHHHHhhh-CCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 78 RVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 78 ~~tv~~Lr~~kk-~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
.+|..+|..+++ -+.||++=..-+...|+.+.++|+|.|.|.+.-|... |..+.+++-+.+-.+++. ++..|
T Consensus 207 ~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~l----d~~~~~~~~l~~i~~a~~---~~i~v 279 (351)
T cd04737 207 KLSPADIEFIAKISGLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQL----DGGPASFDSLPEIAEAVN---HRVPI 279 (351)
T ss_pred CCCHHHHHHHHHHhCCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCccC----CCCchHHHHHHHHHHHhC---CCCeE
Confidence 357777776643 3568777777888999999999999998765555443 344556654333333331 23447
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
++|=.+ .+..++ .+.+ ..||++|.+-
T Consensus 280 i~dGGI----r~g~Di----~kaL-alGA~~V~iG 305 (351)
T cd04737 280 IFDSGV----RRGEHV----FKAL-ASGADAVAVG 305 (351)
T ss_pred EEECCC----CCHHHH----HHHH-HcCCCEEEEC
Confidence 888544 366777 4566 4899999984
No 113
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.61 E-value=3.5 Score=39.68 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHH
Q 026125 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 100 YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl 179 (243)
.....+..+.++|+|+|.+--......++++.. .++++....+. .+.|++.+| - .+.+.+ .++
T Consensus 142 ~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~---~~~~i~~~ik~----~~ipVIaG~-----V-~t~e~A----~~l 204 (368)
T PRK08649 142 RAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEG---EPLNLKEFIYE----LDVPVIVGG-----C-VTYTTA----LHL 204 (368)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCcC---CHHHHHHHHHH----CCCCEEEeC-----C-CCHHHH----HHH
Confidence 345778899999999998743332333443332 24444443333 455643334 2 356666 566
Q ss_pred HHHhCCCEEEeCCC
Q 026125 180 LKEGGMDAIKLEGG 193 (243)
Q Consensus 180 ~keaGAdaVKLEGg 193 (243)
+ ++|||+|++-.|
T Consensus 205 ~-~aGAD~V~VG~G 217 (368)
T PRK08649 205 M-RTGAAGVLVGIG 217 (368)
T ss_pred H-HcCCCEEEECCC
Confidence 6 599999998533
No 114
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=91.53 E-value=3.1 Score=37.86 Aligned_cols=88 Identities=25% Similarity=0.237 Sum_probs=51.2
Q ss_pred EEEEecCCH----HHHHHHHHcC-CCEEEeCcchhhhhc-cCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcC
Q 026125 94 ITMVTAYDY----PSAVHLDSAG-IDICLVGDSAAMVVH-GHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYES 167 (243)
Q Consensus 94 ItmlTAYD~----~sA~iae~AG-iDiILVGDSlgmv~l-G~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~ 167 (243)
|+-+..+|. ..|+.++++| +|.|=+-=|.-+... |+. ..-..+.+.+.+++|++.++.| |.+-+.-
T Consensus 95 i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~--~~~~~~~~~eiv~~vr~~~~~p-v~vKl~~----- 166 (301)
T PRK07259 95 IANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMA--FGTDPELAYEVVKAVKEVVKVP-VIVKLTP----- 166 (301)
T ss_pred EEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccc--cccCHHHHHHHHHHHHHhcCCC-EEEEcCC-----
Confidence 455556653 2466778889 999932111111112 111 1224567778888998887666 5677653
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEe
Q 026125 168 STNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 168 s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
+.++..+.|.++ +++|+|+|-+
T Consensus 167 ~~~~~~~~a~~l-~~~G~d~i~~ 188 (301)
T PRK07259 167 NVTDIVEIAKAA-EEAGADGLSL 188 (301)
T ss_pred CchhHHHHHHHH-HHcCCCEEEE
Confidence 234555555554 4799999865
No 115
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=91.53 E-value=2.9 Score=38.57 Aligned_cols=119 Identities=19% Similarity=0.186 Sum_probs=71.0
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC-Cc-EE------eeCCC
Q 026125 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR-PL-LV------GDLPF 162 (243)
Q Consensus 91 g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~-~f-vV------aDmPf 162 (243)
+.++.++. ....--..+-++|+|.+-+-+|++-... ..-...|.+|.+...+.+.+.++. -+ +. ..-||
T Consensus 72 ~~~~~~l~-~~~~~ie~A~~~g~~~v~i~~~~s~~~~--~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~ 148 (287)
T PRK05692 72 GVTYAALT-PNLKGLEAALAAGADEVAVFASASEAFS--QKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY 148 (287)
T ss_pred CCeEEEEe-cCHHHHHHHHHcCCCEEEEEEecCHHHH--HHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC
Confidence 45666654 3555556677899999876666643311 111235677755554444333321 11 21 35688
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc--CCceeec
Q 026125 163 GTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA--GIAVMGH 214 (243)
Q Consensus 163 gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~--GIPV~GH 214 (243)
.+. .+++..++.+.++. +.|||.|.|.|... ....+++.|.++ ++|+--|
T Consensus 149 ~~~-~~~~~~~~~~~~~~-~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H 205 (287)
T PRK05692 149 EGE-VPPEAVADVAERLF-ALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGH 205 (287)
T ss_pred CCC-CCHHHHHHHHHHHH-HcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 665 67888777777666 69999999998732 344566777654 2555444
No 116
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=91.52 E-value=1.4 Score=39.94 Aligned_cols=70 Identities=24% Similarity=0.186 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 102 ~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
.-.|+..+++|+|+|.| -|. +--.=+ +.+.++|++.++.|++.-| | -.++.|+ ...
T Consensus 73 ~~~A~~~~~~GA~aisvlte~---------~~f~g~----~~~l~~v~~~v~iPvl~kd--f---i~~~~qi-----~~a 129 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDE---------RFFQGS----LEYLRAARAAVSLPVLRKD--F---IIDPYQI-----YEA 129 (260)
T ss_pred HHHHHHHHhCCCeEEEEeccc---------ccCCCC----HHHHHHHHHhcCCCEEeee--e---cCCHHHH-----HHH
Confidence 34678889999999976 110 000001 3455678888888977655 3 3455554 233
Q ss_pred HHhCCCEEEeCCCC
Q 026125 181 KEGGMDAIKLEGGS 194 (243)
Q Consensus 181 keaGAdaVKLEGg~ 194 (243)
.++|||+|-|-+..
T Consensus 130 ~~~GAD~VlLi~~~ 143 (260)
T PRK00278 130 RAAGADAILLIVAA 143 (260)
T ss_pred HHcCCCEEEEEecc
Confidence 47899999998764
No 117
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=91.44 E-value=9.6 Score=35.59 Aligned_cols=145 Identities=9% Similarity=0.076 Sum_probs=90.0
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC
Q 026125 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR 153 (243)
Q Consensus 79 ~tv~~-Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~ 153 (243)
+|..+ |++.++++--+-..++|+..+++ .||+.+.++||-......- ...++.+...++..++.++-
T Consensus 4 v~~k~ll~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~--------~~g~~~~~~~~~~~A~~~~v 75 (283)
T PRK07998 4 VNGRILLDRIQEKHVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQ--------LSGYDYIYEIVKRHADKMDV 75 (283)
T ss_pred CcHHHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHh--------hCCHHHHHHHHHHHHHHCCC
Confidence 45555 44566777888999999999885 5788899999854222111 13356666777888887877
Q ss_pred CcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCch-------HHHHHHHHHcCCceeeccCCcccccc-cc
Q 026125 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSR-------ITAARGIVEAGIAVMGHVGLTPQAIS-VL 225 (243)
Q Consensus 154 ~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~-------~~~i~~L~~~GIPV~GHiGLtPQ~~~-~~ 225 (243)
| |+.-+..+ .+.|.. .+.+ ++|.++|.+.|+.... ..+++..-..|++|=|=||-+...-. ..
T Consensus 76 P-V~lHLDH~---~~~e~i----~~Ai-~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~ 146 (283)
T PRK07998 76 P-VSLHLDHG---KTFEDV----KQAV-RAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHV 146 (283)
T ss_pred C-EEEECcCC---CCHHHH----HHHH-HcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCcccccc
Confidence 7 66777663 244444 3445 4799999997764322 23455566789999555555443211 01
Q ss_pred cCccccccCHHhhccc
Q 026125 226 GGFRPQGKNVTSAVKV 241 (243)
Q Consensus 226 GGykvqGkt~~~A~~l 241 (243)
++ ...-.+.++|.++
T Consensus 147 ~~-~~~~T~pe~a~~F 161 (283)
T PRK07998 147 SE-ADCKTEPEKVKDF 161 (283)
T ss_pred cc-ccccCCHHHHHHH
Confidence 11 2233567777664
No 118
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=91.44 E-value=2.5 Score=40.10 Aligned_cols=84 Identities=18% Similarity=0.255 Sum_probs=53.3
Q ss_pred CCcEEEEe-cCCHHHHHHHHHcCCCEEEeCcchhhhh-------ccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC
Q 026125 91 GEPITMVT-AYDYPSAVHLDSAGIDICLVGDSAAMVV-------HGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF 162 (243)
Q Consensus 91 g~~ItmlT-AYD~~sA~iae~AGiDiILVGDSlgmv~-------lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf 162 (243)
..++++.. +-++..|+.+.++|+|.|.||-.-|..+ .|+++- .+.....++.+.+.| |++|=..
T Consensus 136 p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~-------~l~ai~ev~~a~~~p-VIadGGI 207 (321)
T TIGR01306 136 PDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGW-------QLAALRWCAKAARKP-IIADGGI 207 (321)
T ss_pred CCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCch-------HHHHHHHHHHhcCCe-EEEECCc
Confidence 34655555 7899999999999999999884333332 233321 123333444455444 8899655
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 163 GTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 163 gsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
. +..++ .+.+ ..|||+|.+-
T Consensus 208 ---r-~~~Di----~KAL-a~GAd~Vmig 227 (321)
T TIGR01306 208 ---R-THGDI----AKSI-RFGASMVMIG 227 (321)
T ss_pred ---C-cHHHH----HHHH-HcCCCEEeec
Confidence 2 44566 4566 4799999873
No 119
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=91.36 E-value=2.8 Score=39.24 Aligned_cols=127 Identities=16% Similarity=0.133 Sum_probs=75.2
Q ss_pred cEEEEecCCH----HHHHHHHHcCCCEE-E-eCcchhhh-hccCCCCccCCHHHHHHHHHHHHcccC--CCcEEeeCCCC
Q 026125 93 PITMVTAYDY----PSAVHLDSAGIDIC-L-VGDSAAMV-VHGHDTTLPITLEEMLVHCRAVARGAK--RPLLVGDLPFG 163 (243)
Q Consensus 93 ~ItmlTAYD~----~sA~iae~AGiDiI-L-VGDSlgmv-~lG~~dT~~vTldeMi~h~~aV~Rga~--~~fvVaDmPfg 163 (243)
.++.+..-|. ..|+.++++|+|.| + .|=....+ -.|.-+...-..+-+...+++|++.++ .| |.+=+.-
T Consensus 65 ~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~p-VsvKiR~- 142 (312)
T PRK10550 65 VRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLP-VTVKVRL- 142 (312)
T ss_pred EEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcc-eEEEEEC-
Confidence 3455666663 24677889999999 3 44332222 233333344455667777888988875 45 4555444
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc--------hHHHHHHHHHc-CCceeeccCC-cccccc
Q 026125 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS--------RITAARGIVEA-GIAVMGHVGL-TPQAIS 223 (243)
Q Consensus 164 sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~--------~~~~i~~L~~~-GIPV~GHiGL-tPQ~~~ 223 (243)
++. +.+++++.|.. ++++|+|++.+-+.... ..+.|+.+.++ +|||+|==|+ +|+.+.
T Consensus 143 g~~-~~~~~~~~a~~-l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~ 210 (312)
T PRK10550 143 GWD-SGERKFEIADA-VQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQ 210 (312)
T ss_pred CCC-CchHHHHHHHH-HHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHH
Confidence 332 44556666654 55799999999765210 12335555553 6999986555 454443
No 120
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=91.35 E-value=9.6 Score=35.55 Aligned_cols=126 Identities=13% Similarity=0.200 Sum_probs=83.5
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc--
Q 026125 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-- 151 (243)
Q Consensus 79 ~tv~~-Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-- 151 (243)
++..+ |+..++++--+-..++||+.+++ .||+.+.++|+--.....-. ...++.+...+++.++.+
T Consensus 4 v~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~-------~~g~~~~~~~~~~~a~~~~~ 76 (288)
T TIGR00167 4 VDVKELLQDAKEEGYAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNGAAKY-------IAGLGAISAMVKAMSEAYPY 76 (288)
T ss_pred ccHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcchhhc-------cCCHHHHHHHHHHHHHhccC
Confidence 45555 44566777889999999999984 57888999997432211111 022677777777777767
Q ss_pred CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCccc
Q 026125 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQ 220 (243)
Q Consensus 152 ~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ 220 (243)
+-| |+.-|..+. +.|.. .+.+ +.|...|.+.|+..- +..+++.--..||+|=|=||-++.
T Consensus 77 ~VP-V~lHLDHg~---~~e~i----~~ai-~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg 143 (288)
T TIGR00167 77 GVP-VALHLDHGA---SEEDC----AQAV-KAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGG 143 (288)
T ss_pred CCc-EEEECCCCC---CHHHH----HHHH-HcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccC
Confidence 556 677887732 44443 4456 489999999888432 223445455689999777777753
No 121
>PRK06801 hypothetical protein; Provisional
Probab=91.28 E-value=8.1 Score=36.00 Aligned_cols=126 Identities=17% Similarity=0.232 Sum_probs=88.0
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 026125 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 79 ~tv~~-Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~ 152 (243)
+++.+ |+..++++--+-..++||+.+++ .||+.+.++|+ ++.+.. ....++.+...++..++.++
T Consensus 4 v~~~~~l~~A~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~---------~~~~~~~~~~~~~~~a~~~~ 74 (286)
T PRK06801 4 ISLANGLAHARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHF---------KYISLESLVEAVKFEAARHD 74 (286)
T ss_pred CcHHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchh---------hcCCHHHHHHHHHHHHHHCC
Confidence 45555 44566788889999999999986 56888999887 443321 12568889999999999888
Q ss_pred CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCccccc
Q 026125 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQAI 222 (243)
Q Consensus 153 ~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ~~ 222 (243)
-| |+.-+..+. +.+. + .+.+ ++|+++|.+.|.... ...+++..-..|++|-+=+|-+.|.-
T Consensus 75 vp-V~lHlDH~~---~~e~-i---~~Ai-~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e 142 (286)
T PRK06801 75 IP-VVLNLDHGL---HFEA-V---VRAL-RLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDE 142 (286)
T ss_pred CC-EEEECCCCC---CHHH-H---HHHH-HhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCC
Confidence 87 678888843 3333 3 3446 489999999776432 22334445588999987777776643
No 122
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=91.26 E-value=2.7 Score=38.85 Aligned_cols=115 Identities=21% Similarity=0.296 Sum_probs=72.7
Q ss_pred CcEEEEe--cCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC--CcEEeeCCC-----
Q 026125 92 EPITMVT--AYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR--PLLVGDLPF----- 162 (243)
Q Consensus 92 ~~ItmlT--AYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~--~fvVaDmPf----- 162 (243)
-|+..=. +.|+...+.+=++||+.|..-.|- .+++|.+..++.|++-+.. .-|-+-+..
T Consensus 75 vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~------------l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~e 142 (282)
T TIGR01859 75 VPVALHLDHGSSYESCIKAIKAGFSSVMIDGSH------------LPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIE 142 (282)
T ss_pred CeEEEECCCCCCHHHHHHHHHcCCCEEEECCCC------------CCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcc
Confidence 4544432 235667777778899988776443 4899999999998853321 112222211
Q ss_pred -------CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC---------CCchHHHHHHHHHc-CCceeecc--CCcccccc
Q 026125 163 -------GTYESSTNQAVDTAVRILKEGGMDAIKLEGG---------SPSRITAARGIVEA-GIAVMGHV--GLTPQAIS 223 (243)
Q Consensus 163 -------gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg---------~~~~~~~i~~L~~~-GIPV~GHi--GLtPQ~~~ 223 (243)
.+| .++|++ .+++++.|+|.+=+.=| ...-.+.++.|.++ +||++.|= |+.+....
T Consensus 143 d~~~g~~~~~-t~~eea----~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~ 217 (282)
T TIGR01859 143 DGVDEKEAEL-ADPDEA----EQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIK 217 (282)
T ss_pred cccccccccc-CCHHHH----HHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHH
Confidence 356 589998 56776689999875411 11234556667665 79999998 77766543
No 123
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=91.23 E-value=10 Score=35.16 Aligned_cols=140 Identities=16% Similarity=0.187 Sum_probs=91.1
Q ss_pred HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
|+..++++--+-..++||+.+++ .||+.+.++|+ +..+. .. ...++.+...++..++.++-| |..
T Consensus 5 L~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~-~~--------~~~~~~~~~~~~~~a~~~~VP-V~l 74 (276)
T cd00947 5 LKKAREGGYAVGAFNINNLETLKAILEAAEETRSPVILQISEGA-IK--------YAGLELLVAMVKAAAERASVP-VAL 74 (276)
T ss_pred HHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcch-hh--------hCCHHHHHHHHHHHHHHCCCC-EEE
Confidence 55667788899999999999986 57888999887 43322 11 233777888888888888777 677
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCcccccccccCcccc
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQ 231 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvq 231 (243)
-+..+ .+.+.. .+.+ ++|.+.|.+.|+... +..+++..-..||+|=|=||-++-.-....+-...
T Consensus 75 HLDH~---~~~~~i----~~ai-~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~ 146 (276)
T cd00947 75 HLDHG---SSFELI----KRAI-RAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGL 146 (276)
T ss_pred ECCCC---CCHHHH----HHHH-HhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccccccc
Confidence 77774 244554 3456 489999999888432 23445666678999977666665322111111112
Q ss_pred ccCHHhhccc
Q 026125 232 GKNVTSAVKV 241 (243)
Q Consensus 232 Gkt~~~A~~l 241 (243)
--+.++|++.
T Consensus 147 ~T~pe~a~~F 156 (276)
T cd00947 147 LTDPEEAEEF 156 (276)
T ss_pred CCCHHHHHHH
Confidence 2456666653
No 124
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=91.14 E-value=3.3 Score=40.15 Aligned_cols=97 Identities=18% Similarity=0.136 Sum_probs=67.2
Q ss_pred CCCHHHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 78 RVTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 78 ~~tv~~Lr~~kk~-g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
.+|..+|+..++. +-||++=++-+...|+.+.++|+|.|.|+..-|-. .|+.+-|++-+.+-.+++. ++..|
T Consensus 239 ~~tW~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~----~d~~~~t~~~L~ei~~~~~---~~~~v 311 (383)
T cd03332 239 SLTWEDLAFLREWTDLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQ----VDGSIAALDALPEIVEAVG---DRLTV 311 (383)
T ss_pred CCCHHHHHHHHHhcCCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcC----CCCCcCHHHHHHHHHHHhc---CCCeE
Confidence 4788888777554 57888889999999999999999999887554422 3555556665555444442 12337
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
++|=.+ . +..+. .+.+ ..||++|-+
T Consensus 312 i~dGGI---r-~G~Dv----~KAL-aLGA~~v~i 336 (383)
T cd03332 312 LFDSGV---R-TGADI----MKAL-ALGAKAVLI 336 (383)
T ss_pred EEeCCc---C-cHHHH----HHHH-HcCCCEEEE
Confidence 788544 3 45565 3455 479999988
No 125
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=91.08 E-value=3.8 Score=39.53 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=55.5
Q ss_pred CCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcc----c--CCCcEEeeCCCC
Q 026125 90 NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARG----A--KRPLLVGDLPFG 163 (243)
Q Consensus 90 ~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rg----a--~~~fvVaDmPfg 163 (243)
-+-|+.+=.+.++..|+.+.++|+|.|++|-..+...-+.. ...+++.+.+..+.+.++- . ..-.||+|=.+
T Consensus 187 ~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~~l-g~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI- 264 (369)
T TIGR01304 187 LDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVL-GIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGI- 264 (369)
T ss_pred CCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCccccccc-CCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCC-
Confidence 34565543789999999888999999986643322111111 1235555555555554431 1 12348898544
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 164 TYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 164 sY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
.+..+. .+.+ ..|||+|.+
T Consensus 265 ---~tg~di----~kAl-AlGAdaV~i 283 (369)
T TIGR01304 265 ---ETSGDL----VKAI-ACGADAVVL 283 (369)
T ss_pred ---CCHHHH----HHHH-HcCCCEeee
Confidence 366776 4566 489999988
No 126
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=91.03 E-value=3.7 Score=39.29 Aligned_cols=107 Identities=18% Similarity=0.166 Sum_probs=62.2
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE-EeCcc---hhhhhcc-----CCCCccCCHH----HHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC-LVGDS---AAMVVHG-----HDTTLPITLE----EMLVH 143 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI-LVGDS---lgmv~lG-----~~dT~~vTld----eMi~h 143 (243)
+.+|..++.+..+. | ...|+.|.+||||.| +=+.. |-.-.|- -.|--.=++| -.++.
T Consensus 138 ~~mt~~eI~~ii~~---------f-~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~ei 207 (382)
T cd02931 138 RELTTEEVETFVGK---------F-GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEI 207 (382)
T ss_pred CcCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHH
Confidence 56888888876542 1 246788999999999 42311 1111100 0111112344 35677
Q ss_pred HHHHHcccCCCcEE-e--eC------------C---CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 144 CRAVARGAKRPLLV-G--DL------------P---FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 144 ~~aV~Rga~~~fvV-a--Dm------------P---fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
.++|++.++.-|.| . .. | |..-+.+.+++++-+.++. +.|+|.|.+.+|.
T Consensus 208 i~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~-~~gvD~l~vs~g~ 275 (382)
T cd02931 208 VEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILE-EAGYDALDVDAGS 275 (382)
T ss_pred HHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHH-HhCCCEEEeCCCC
Confidence 78888888655443 2 10 0 1111236889888876665 6899999998764
No 127
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=91.02 E-value=3.7 Score=38.32 Aligned_cols=106 Identities=17% Similarity=0.229 Sum_probs=60.2
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHccc----CC
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA----KR 153 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga----~~ 153 (243)
-+.-|+..+ +..-+++.-++|...|+...+||.|+|. +|=..+ -..|.++ ..|+||.+..++++.+++ |+
T Consensus 139 EVemi~~A~-~~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~g-G~~Ga~~--~~sl~~a~~~~~~i~~aa~~v~~d 214 (268)
T PF09370_consen 139 EVEMIRKAH-EKGLFTTAYVFNEEQARAMAEAGADIIVAHMGLTTG-GSIGAKT--ALSLEEAAERIQEIFDAARAVNPD 214 (268)
T ss_dssp HHHHHHHHH-HTT-EE--EE-SHHHHHHHHHHT-SEEEEE-SS-------------S--HHHHHHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHH-HCCCeeeeeecCHHHHHHHHHcCCCEEEecCCccCC-CCcCccc--cCCHHHHHHHHHHHHHHHHHhCCC
Confidence 345566664 4568999999999999999999999996 332221 2344443 569999998888877644 55
Q ss_pred CcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC-CCEEEeCCCCCc
Q 026125 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGG-MDAIKLEGGSPS 196 (243)
Q Consensus 154 ~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG-AdaVKLEGg~~~ 196 (243)
.++++. |+--.+|+++ -.++++.. +++..-.-.-|+
T Consensus 215 ii~l~h---GGPI~~p~D~----~~~l~~t~~~~Gf~G~Ss~ER 251 (268)
T PF09370_consen 215 IIVLCH---GGPIATPEDA----QYVLRNTKGIHGFIGASSMER 251 (268)
T ss_dssp -EEEEE---CTTB-SHHHH----HHHHHH-TTEEEEEESTTTTH
T ss_pred eEEEEe---CCCCCCHHHH----HHHHhcCCCCCEEecccchhh
Confidence 655554 4444689998 55666665 788755444443
No 128
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=91.00 E-value=1.8 Score=41.91 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=55.5
Q ss_pred HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 026125 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (243)
Q Consensus 106 ~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGA 185 (243)
.-.++||+|++-+- |.=.+-....+.|++..+.| +|+|.=| .| .-| ...+ +.|+
T Consensus 49 ~~L~~aGceiVRva---------------v~~~~~a~al~~I~~~~~iP-lvADIHF-d~----~lA----l~a~-~~G~ 102 (360)
T PRK00366 49 KRLARAGCEIVRVA---------------VPDMEAAAALPEIKKQLPVP-LVADIHF-DY----RLA----LAAA-EAGA 102 (360)
T ss_pred HHHHHcCCCEEEEc---------------cCCHHHHHhHHHHHHcCCCC-EEEecCC-CH----HHH----HHHH-HhCC
Confidence 34678888888543 11112245567788889888 7999988 55 344 4455 5899
Q ss_pred CEEEeCCCC-----CchHHHHHHHHHcCCce
Q 026125 186 DAIKLEGGS-----PSRITAARGIVEAGIAV 211 (243)
Q Consensus 186 daVKLEGg~-----~~~~~~i~~L~~~GIPV 211 (243)
|++.|--|. +....++++.-+.|||+
T Consensus 103 ~~iRINPGNig~~~~~v~~vv~~ak~~~ipI 133 (360)
T PRK00366 103 DALRINPGNIGKRDERVREVVEAAKDYGIPI 133 (360)
T ss_pred CEEEECCCCCCchHHHHHHHHHHHHHCCCCE
Confidence 999998773 23456778888899997
No 129
>PLN02535 glycolate oxidase
Probab=90.93 E-value=3.8 Score=39.50 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=66.2
Q ss_pred CCCHHHHHHhhh-CCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 78 RVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 78 ~~tv~~Lr~~kk-~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
..|+.+++..++ -+.||.+=.+-+...|+.+.++|+|.|.|...-|. ..|..+.|++-+.+-.+++.. ..+ |
T Consensus 209 ~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr----~~d~~~~t~~~L~ev~~av~~--~ip-V 281 (364)
T PLN02535 209 SLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGAR----QLDYSPATISVLEEVVQAVGG--RVP-V 281 (364)
T ss_pred CCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcC----CCCCChHHHHHHHHHHHHHhc--CCC-E
Confidence 578888877643 24688887888899999999999999977655443 234455566555554444421 234 7
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
++|= +. .+..++ .+.+ ..||++|-+-
T Consensus 282 i~dG---GI-r~g~Dv----~KAL-alGA~aV~vG 307 (364)
T PLN02535 282 LLDG---GV-RRGTDV----FKAL-ALGAQAVLVG 307 (364)
T ss_pred EeeC---CC-CCHHHH----HHHH-HcCCCEEEEC
Confidence 7874 45 366777 4566 4899999884
No 130
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=90.90 E-value=7.8 Score=36.10 Aligned_cols=123 Identities=16% Similarity=0.262 Sum_probs=84.7
Q ss_pred CCHHHH-HHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 026125 79 VTLTHL-RQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 79 ~tv~~L-r~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~ 152 (243)
+++.++ +..++++--+-..++||+.+++ .||+.+.++|+ +..+. .-. ..++.+...++..++.++
T Consensus 4 v~~k~iL~~A~~~~yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~-~~~--------~g~~~~~~~~~~~A~~~~ 74 (284)
T PRK12857 4 VTVAELLKKAEKGGYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGA-IKY--------AGIEYISAMVRTAAEKAS 74 (284)
T ss_pred CcHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhH-hhh--------CCHHHHHHHHHHHHHHCC
Confidence 455554 4456677789999999999984 57888999987 43222 111 236667777888888887
Q ss_pred CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCcc
Q 026125 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTP 219 (243)
Q Consensus 153 ~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtP 219 (243)
-| |+.-+..+. +.|.. .+.+ ++|...|.+.|+..- +..+++..-..||+|=|=||-++
T Consensus 75 VP-ValHLDH~~---~~e~i----~~ai-~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vg 139 (284)
T PRK12857 75 VP-VALHLDHGT---DFEQV----MKCI-RNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIG 139 (284)
T ss_pred CC-EEEECCCCC---CHHHH----HHHH-HcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecC
Confidence 77 677887742 44443 4555 479999999888432 23445555579999987777766
No 131
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=90.89 E-value=12 Score=34.05 Aligned_cols=115 Identities=13% Similarity=0.084 Sum_probs=77.8
Q ss_pred HHHHhhhCCCcEEE--EecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 83 HLRQKHKNGEPITM--VTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 83 ~Lr~~kk~g~~Itm--lTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
.|+++.++|++..- ++..+...+.++..+|+|.+.+=- -.++.+++++..+++++.. .+.+ .++=.
T Consensus 9 ~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~G~D~v~iD~----------EHg~~~~~~~~~~i~a~~~-~g~~-~lVRv 76 (256)
T PRK10558 9 KFKAALAAKQVQIGCWSALANPITTEVLGLAGFDWLVLDG----------EHAPNDVSTFIPQLMALKG-SASA-PVVRV 76 (256)
T ss_pred HHHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEEcc----------ccCCCCHHHHHHHHHHHhh-cCCC-cEEEC
Confidence 37888888888654 456889999999999999998751 1246788888888887754 4333 34555
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHH-HHcCCceeeccCCccc
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGI-VEAGIAVMGHVGLTPQ 220 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L-~~~GIPV~GHiGLtPQ 220 (243)
|... +... .|.+ +.||++|-+--=. ..++ ++.+ ...--|=.|.=|+-|-
T Consensus 77 p~~~----~~~i----~r~L-D~Ga~giivP~v~-tae~-a~~~v~a~kypP~G~Rg~~~~ 126 (256)
T PRK10558 77 PTNE----PVII----KRLL-DIGFYNFLIPFVE-TAEE-ARRAVASTRYPPEGIRGVSVS 126 (256)
T ss_pred CCCC----HHHH----HHHh-CCCCCeeeecCcC-CHHH-HHHHHHHcCCCCCCcCCCCcc
Confidence 6533 3333 5677 6899999876443 3444 3444 3455677788777663
No 132
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=90.87 E-value=2.8 Score=40.40 Aligned_cols=96 Identities=14% Similarity=0.129 Sum_probs=63.3
Q ss_pred CCCHHHHHHhhh-CCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 78 RVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 78 ~~tv~~Lr~~kk-~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
..++.+++..++ -+.|+++=.+-+...|+.+.++|+|.|.|+..-|-.. |..+-+++-+.. +++..+.+ |
T Consensus 222 ~~~w~~i~~ir~~~~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrql----d~~~~~~~~L~e----i~~~~~~~-v 292 (361)
T cd04736 222 SFNWQDLRWLRDLWPHKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQL----DDAIAPIEALAE----IVAATYKP-V 292 (361)
T ss_pred cCCHHHHHHHHHhCCCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCCC----cCCccHHHHHHH----HHHHhCCe-E
Confidence 356666655432 2468888899999999999999999998875444332 222334544443 44444444 7
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
++|= ++. +..++ .+.+ ..||++|-+-
T Consensus 293 i~dG---GIr-~g~Dv----~KAL-aLGA~aV~iG 318 (361)
T cd04736 293 LIDS---GIR-RGSDI----VKAL-ALGANAVLLG 318 (361)
T ss_pred EEeC---CCC-CHHHH----HHHH-HcCCCEEEEC
Confidence 8884 553 66777 3566 4899999883
No 133
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=90.85 E-value=10 Score=35.03 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=79.3
Q ss_pred HHHHhhhCCCcEEE--EecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 83 HLRQKHKNGEPITM--VTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 83 ~Lr~~kk~g~~Itm--lTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
.|+++.++|++..- ++-.+...+.++..+|+|.+++=- -..+.+++++...+++++. ...+ .++=.
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~----------EHg~~~~~~l~~~i~a~~~-~g~~-~lVRv 75 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDG----------EHAPNTIQDLYHQLQAIAP-YASQ-PVIRP 75 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEcc----------ccCCCCHHHHHHHHHHHHh-cCCC-eEEEC
Confidence 47888888888654 566889999999999999998751 2247889998888888864 4333 35566
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHH-HcCCceeeccCCccc
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIV-EAGIAVMGHVGLTPQ 220 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~-~~GIPV~GHiGLtPQ 220 (243)
|..++ ... .|.+ +.||++|-+--=. ..++ ++.++ ..--|-.|.=|+-|.
T Consensus 76 p~~~~----~~i----~r~L-D~GA~GIivP~V~-saee-A~~~V~a~rYpP~G~Rg~g~~ 125 (267)
T PRK10128 76 VEGSK----PLI----KQVL-DIGAQTLLIPMVD-TAEQ-ARQVVSATRYPPYGERGVGAS 125 (267)
T ss_pred CCCCH----HHH----HHHh-CCCCCeeEecCcC-CHHH-HHHHHHhcCCCCCCCCCCCCc
Confidence 76443 333 5777 6999999886543 3344 34444 445788888777654
No 134
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=90.77 E-value=5.1 Score=38.39 Aligned_cols=125 Identities=19% Similarity=0.235 Sum_probs=76.7
Q ss_pred CCCHHHHHHhh-hCCCcEEEEecCCH-------HHHHHHH---HcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHH
Q 026125 78 RVTLTHLRQKH-KNGEPITMVTAYDY-------PSAVHLD---SAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRA 146 (243)
Q Consensus 78 ~~tv~~Lr~~k-k~g~~ItmlTAYD~-------~sA~iae---~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~a 146 (243)
+.-+.-+|++. ..++|++ .|..+. ..|++++ ++|+|.|..--+++. --..+++|=+..++.
T Consensus 115 ~fGi~g~R~~~gv~~rPli-~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge-------~~~~~~eER~~~v~~ 186 (367)
T cd08205 115 RFGIEGLRRLLGVHDRPLL-GTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLAD-------QPYAPFEERVRACME 186 (367)
T ss_pred CCCchhHHHHhCCCCCCee-eeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccC-------cccCCHHHHHHHHHH
Confidence 35566666653 3357764 444332 3455555 459999965444433 335688997766665
Q ss_pred HHcccC-----CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHH-HcCCceeeccCC
Q 026125 147 VARGAK-----RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIV-EAGIAVMGHVGL 217 (243)
Q Consensus 147 V~Rga~-----~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~-~~GIPV~GHiGL 217 (243)
+++.++ .++++++.- .+.++.+++|.... +.|||+|.+--...-... .+.|. +.++|+++|--.
T Consensus 187 av~~a~~~TG~~~~y~~nit-----~~~~e~i~~a~~a~-~~Gad~vmv~~~~~g~~~-~~~l~~~~~lpi~~H~a~ 256 (367)
T cd08205 187 AVRRANEETGRKTLYAPNIT-----GDPDELRRRADRAV-EAGANALLINPNLVGLDA-LRALAEDPDLPIMAHPAF 256 (367)
T ss_pred HHHHHHHhhCCcceEEEEcC-----CCHHHHHHHHHHHH-HcCCCEEEEecccccccH-HHHHHhcCCCeEEEccCc
Confidence 554433 466667652 24589999997665 699999998755332111 23333 458999999765
No 135
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=90.75 E-value=2.1 Score=41.19 Aligned_cols=101 Identities=20% Similarity=0.350 Sum_probs=63.3
Q ss_pred EEecCC--HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHH
Q 026125 96 MVTAYD--YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAV 173 (243)
Q Consensus 96 mlTAYD--~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av 173 (243)
.+...| +..+..+-+||+|+|++--+ +| ..+.++..++.+++.-|+.+||+. .- .+.|.+
T Consensus 102 avg~~~~~~er~~~L~~agvD~ivID~a-----~g-------~s~~~~~~ik~ik~~~~~~~viaG----NV-~T~e~a- 163 (352)
T PF00478_consen 102 AVGTRDDDFERAEALVEAGVDVIVIDSA-----HG-------HSEHVIDMIKKIKKKFPDVPVIAG----NV-VTYEGA- 163 (352)
T ss_dssp EEESSTCHHHHHHHHHHTT-SEEEEE-S-----ST-------TSHHHHHHHHHHHHHSTTSEEEEE----EE--SHHHH-
T ss_pred EecCCHHHHHHHHHHHHcCCCEEEcccc-----Cc-------cHHHHHHHHHHHHHhCCCceEEec----cc-CCHHHH-
Confidence 345555 77888888899999987411 22 234567778899999987667743 33 466666
Q ss_pred HHHHHHHHHhCCCEEEeCCCCCc-----------------hHHHHHHHHHcCCceeeccCCc
Q 026125 174 DTAVRILKEGGMDAIKLEGGSPS-----------------RITAARGIVEAGIAVMGHVGLT 218 (243)
Q Consensus 174 ~nA~Rl~keaGAdaVKLEGg~~~-----------------~~~~i~~L~~~GIPV~GHiGLt 218 (243)
..|+ ++|||+||+==|... +.++.++..+.||||++.=|+.
T Consensus 164 ---~~L~-~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~ 221 (352)
T PF00478_consen 164 ---KDLI-DAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIR 221 (352)
T ss_dssp ---HHHH-HTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-S
T ss_pred ---HHHH-HcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcC
Confidence 4577 599999999633211 1233455556789998875553
No 136
>PF00463 ICL: Isocitrate lyase family; InterPro: IPR000918 Isocitrate lyase (4.1.3.1 from EC) [, ] is an enzyme that catalyzes the conversion of isocitrate to succinate and glyoxylate. This is the first step in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. A cysteine, a histidine and a glutamate or aspartate have been found to be important for the enzyme's catalytic activity. Only one cysteine residue is conserved between the sequences of the fungal, plant and bacterial enzymes; it is located in the middle of a conserved hexapeptide. Other enzymes also belong to this family including carboxyvinyl-carboxyphosphonate phosphorylmutase (2.7.8.23 from EC) which catalyses the conversion of 1-carboxyvinyl carboxyphosphonate to 3-(hydrohydroxyphosphoryl) pyruvate carbon dioxide, and phosphoenolpyruvate mutase (5.4.2.9 from EC), which is involved in the biosynthesis of phosphinothricin tripeptide antiobiotics. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1IGW_D 3P0X_B 3EOL_B 3E5B_B 3OQ8_D 3LG3_A 3I4E_D 1F8I_B 1F8M_D 1F61_A ....
Probab=90.61 E-value=0.75 Score=46.36 Aligned_cols=102 Identities=13% Similarity=0.113 Sum_probs=57.3
Q ss_pred hCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhh-----hhccCCCCccCCHHHHHHHHHHHHccc------------
Q 026125 89 KNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAM-----VVHGHDTTLPITLEEMLVHCRAVARGA------------ 151 (243)
Q Consensus 89 k~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgm-----v~lG~~dT~~vTldeMi~h~~aV~Rga------------ 151 (243)
+++.+....++.|......+. +|.+.|.|..+.-. +--=+||-..-..+-+-..++.|-++-
T Consensus 55 ~~~~~~~t~g~~~p~~~~q~~-~~l~~iYvSGWq~ss~~s~~~e~~PD~s~YP~~tVP~~V~ri~~aq~~~D~~q~~~~~ 133 (526)
T PF00463_consen 55 KNGYVSHTGGATDPQQVQQMA-KGLEAIYVSGWQCSSDASTSNEPYPDQSDYPYDTVPNKVERIFNAQLRHDRKQWEERL 133 (526)
T ss_dssp SSSSEEEEBBSSHHHHHHHHH-CT-SSEEE-HHHHHHHS-TT-S--SSSS-S-TTHHHHHHHHHHHHHHHHHHHHHHCTC
T ss_pred hcCCcceecccccHHHHHHHH-hcCCeEEeeceeeecccccCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 346777777888887777665 69999976554322 123356655555544433333332210
Q ss_pred ---C-----------CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 152 ---K-----------RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 152 ---~-----------~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
+ ...||+|-.- +| .++..+++-+..++ |+||.+|++||-.
T Consensus 134 ~~~~~~r~~~~~~Dyl~PIIADad~-Gf-GG~~~v~kL~K~fi-EaGaAgiH~EDQ~ 187 (526)
T PF00463_consen 134 SMTKEERAKTPYIDYLRPIIADADA-GF-GGLTAVMKLTKLFI-EAGAAGIHFEDQL 187 (526)
T ss_dssp STTSTTHTTS--S-SS--EEEE-TT-TS-SSHHHHHHHHHHHH-HHT-SEEEEESB-
T ss_pred cccchhhcccCcccceeeeeecccc-CC-CCHHHHHHHHHHHH-hcCCceechhhcc
Confidence 0 1357866655 55 36788888887777 7999999999874
No 137
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=90.51 E-value=6.4 Score=35.12 Aligned_cols=100 Identities=12% Similarity=0.158 Sum_probs=67.2
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE--EeCcchhhhhccCCCCccCCHHHHHHHHHHHHc-ccCCCcEE
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC--LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR-GAKRPLLV 157 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI--LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R-ga~~~fvV 157 (243)
+.-++.+.+.|-++.+-.+|+...|.+|.++|+|.| .|| .+ --+|.+ .++.+....+.++. +.+..++.
T Consensus 91 l~A~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvg-Ri--~d~g~d-----g~~~v~~~~~~~~~~~~~tkIla 162 (213)
T TIGR00875 91 LKAVKILKKEGIKTNVTLVFSAAQALLAAKAGATYVSPFVG-RL--DDIGGD-----GMKLIEEVKTIFENHAPDTEVIA 162 (213)
T ss_pred HHHHHHHHHCCCceeEEEecCHHHHHHHHHcCCCEEEeecc-hH--HHcCCC-----HHHHHHHHHHHHHHcCCCCEEEE
Confidence 666778888999999999999999999999999988 477 22 122332 23333333333333 34555444
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHH
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIV 205 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~ 205 (243)
+ |+ .|+++. .++. .+|+|.|-+- +++++.|.
T Consensus 163 A-----S~-r~~~~v----~~~~-~~G~d~vTip------~~vl~~l~ 193 (213)
T TIGR00875 163 A-----SV-RHPRHV----LEAA-LIGADIATMP------LDVMQQLF 193 (213)
T ss_pred e-----cc-CCHHHH----HHHH-HcCCCEEEcC------HHHHHHHH
Confidence 4 67 588888 4455 4899999885 45566664
No 138
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=90.41 E-value=9.3 Score=35.64 Aligned_cols=104 Identities=19% Similarity=0.150 Sum_probs=57.9
Q ss_pred HHHHHHhhhCCCc-EEEEecCC--------HHHHHHHHHcC--CCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHc
Q 026125 81 LTHLRQKHKNGEP-ITMVTAYD--------YPSAVHLDSAG--IDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR 149 (243)
Q Consensus 81 v~~Lr~~kk~g~~-ItmlTAYD--------~~sA~iae~AG--iDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R 149 (243)
+.++++.+..+.| |+-+...+ --.+..+++++ +|.|-+--|--++. |... .-..+.+.+.+++|++
T Consensus 118 ~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~-g~~~--~~~~~~~~~iv~av~~ 194 (327)
T cd04738 118 AKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTP-GLRD--LQGKEALRELLTAVKE 194 (327)
T ss_pred HHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCC-cccc--ccCHHHHHHHHHHHHH
Confidence 3445443322333 34455555 33666677766 89885543333321 2111 2344556667788887
Q ss_pred ccC-----CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 026125 150 GAK-----RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (243)
Q Consensus 150 ga~-----~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEG 192 (243)
.++ .| |.+=++. + .+.++..+-|.. +.++|||+|.+-+
T Consensus 195 ~~~~~~~~~P-v~vKl~~--~-~~~~~~~~ia~~-l~~aGad~I~~~n 237 (327)
T cd04738 195 ERNKLGKKVP-LLVKIAP--D-LSDEELEDIADV-ALEHGVDGIIATN 237 (327)
T ss_pred HHhhcccCCC-eEEEeCC--C-CCHHHHHHHHHH-HHHcCCcEEEEEC
Confidence 765 56 4555553 2 245566555544 5579999999765
No 139
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=90.34 E-value=4.2 Score=40.39 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=55.8
Q ss_pred cEEEEe-cCCHHHHHHHHHcCCCEEEeCcchhhhh--ccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCH
Q 026125 93 PITMVT-AYDYPSAVHLDSAGIDICLVGDSAAMVV--HGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST 169 (243)
Q Consensus 93 ~ItmlT-AYD~~sA~iae~AGiDiILVGDSlgmv~--lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~ 169 (243)
..+|.. +-++..|+.+.++|+|.|-||-.-|..+ -++.+-+.-++.- +..|...++..+.+ +|+|= ++ .++
T Consensus 267 ~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a-~~~~~~~~~~~~~~-viadG---gi-~~~ 340 (475)
T TIGR01303 267 VPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSA-VLECAAEARKLGGH-VWADG---GV-RHP 340 (475)
T ss_pred CeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHH-HHHHHHHHHHcCCc-EEEeC---CC-CCH
Confidence 345555 9999999999999999998886655533 2222222223333 33343333444444 89984 55 367
Q ss_pred HHHHHHHHHHHHHhCCCEEEeC
Q 026125 170 NQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 170 e~Av~nA~Rl~keaGAdaVKLE 191 (243)
.+. .+.+ .+||++|.+-
T Consensus 341 ~di----~kal-a~GA~~vm~g 357 (475)
T TIGR01303 341 RDV----ALAL-AAGASNVMVG 357 (475)
T ss_pred HHH----HHHH-HcCCCEEeec
Confidence 777 4566 4899999873
No 140
>PRK01362 putative translaldolase; Provisional
Probab=90.34 E-value=7.4 Score=34.77 Aligned_cols=101 Identities=14% Similarity=0.187 Sum_probs=66.0
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE--EeCcchhhhhccCCCCccCCHHHHHHHHHHHHc-ccCCCcEE
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC--LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR-GAKRPLLV 157 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI--LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R-ga~~~fvV 157 (243)
+.-++.++++|-++.+-.+|+...|.+|.++|+|.| .+| .+.. .|.+ .++.+....+.+++ +.+..++.
T Consensus 91 ~~a~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvg-Ri~d--~g~d-----g~~~i~~~~~~~~~~~~~tkila 162 (214)
T PRK01362 91 LKAVKALSKEGIKTNVTLIFSANQALLAAKAGATYVSPFVG-RLDD--IGTD-----GMELIEDIREIYDNYGFDTEIIA 162 (214)
T ss_pred HHHHHHHHHCCCceEEeeecCHHHHHHHHhcCCcEEEeecc-hHhh--cCCC-----HHHHHHHHHHHHHHcCCCcEEEE
Confidence 666778888999999999999999999999999988 477 2211 2222 33333333333333 32333333
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE 206 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~ 206 (243)
+ |+ .|+++. .++. .+|||.+-+- +++.+.|.+
T Consensus 163 A-----S~-r~~~~v----~~~~-~~G~d~iTi~------~~vl~~l~~ 194 (214)
T PRK01362 163 A-----SV-RHPMHV----LEAA-LAGADIATIP------YKVIKQLFK 194 (214)
T ss_pred e-----ec-CCHHHH----HHHH-HcCCCEEecC------HHHHHHHHc
Confidence 4 67 588888 4555 4899999875 445566654
No 141
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=90.26 E-value=7.3 Score=36.83 Aligned_cols=109 Identities=13% Similarity=0.041 Sum_probs=69.4
Q ss_pred CCCcEEEEec---CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCc
Q 026125 90 NGEPITMVTA---YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYE 166 (243)
Q Consensus 90 ~g~~ItmlTA---YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~ 166 (243)
.+.++.++.. ++......+.++|+|.|-+.+...- .+....+++.+++.--. +.+.+-. ++.
T Consensus 76 ~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e------------~~~~~~~i~~ak~~G~~--v~~~l~~-a~~ 140 (337)
T PRK08195 76 KQAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATHCTE------------ADVSEQHIGLARELGMD--TVGFLMM-SHM 140 (337)
T ss_pred CCCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEecch------------HHHHHHHHHHHHHCCCe--EEEEEEe-ccC
Confidence 4467766433 3667778888999999977653311 24556777776643211 2333333 344
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc---CCceeec
Q 026125 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA---GIAVMGH 214 (243)
Q Consensus 167 ~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~---GIPV~GH 214 (243)
.+++..++.+.++. +.||+.|.|-|... ....++++|.++ +||+--|
T Consensus 141 ~~~e~l~~~a~~~~-~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 195 (337)
T PRK08195 141 APPEKLAEQAKLME-SYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFH 195 (337)
T ss_pred CCHHHHHHHHHHHH-hCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 57888888776655 79999999999832 344566777665 5776555
No 142
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=90.15 E-value=7.7 Score=35.59 Aligned_cols=117 Identities=18% Similarity=0.191 Sum_probs=72.4
Q ss_pred CcEEEEecCCH------HHHHHHHHcCCCEEEeCcchhh-hhcc-------CCC-CccCCHHHHHHHHHHHHcccCCCcE
Q 026125 92 EPITMVTAYDY------PSAVHLDSAGIDICLVGDSAAM-VVHG-------HDT-TLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 92 ~~ItmlTAYD~------~sA~iae~AGiDiILVGDSlgm-v~lG-------~~d-T~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
.-|.-+|+=|. ..++..+++|+|+|=+|-..+- +.-| ... -..+|+++.+..++.+++-.+.|++
T Consensus 16 ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~v 95 (263)
T CHL00200 16 ALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIV 95 (263)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEE
Confidence 45667777552 2366678899999965532211 0000 000 2356888999999999876555633
Q ss_pred EeeCCCCCCcCCHH-H-HHHHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHHcCCceeec
Q 026125 157 VGDLPFGTYESSTN-Q-AVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 157 VaDmPfgsY~~s~e-~-Av~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~~GIPV~GH 214 (243)
+++| .|+- + .+++-.+..+++|+|+|-+-|=. ++...+++.+.+.||..+-=
T Consensus 96 -----lm~Y-~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~l 150 (263)
T CHL00200 96 -----IFTY-YNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILL 150 (263)
T ss_pred -----EEec-ccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3455 3442 2 34444666678999999998753 33456667778888765543
No 143
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=90.07 E-value=3.1 Score=40.95 Aligned_cols=72 Identities=29% Similarity=0.451 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHH
Q 026125 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 100 YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl 179 (243)
.++..+...-++|+|+|.+- +. +|+. +.++...+.+++-.+...|++ |+- .+.+++ .++
T Consensus 228 ~~~e~a~~L~~agvdvivvD-~a----~g~~-------~~vl~~i~~i~~~~p~~~vi~----g~v-~t~e~a----~~l 286 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVD-TA----HGHS-------EGVLDRVREIKAKYPDVQIIA----GNV-ATAEAA----RAL 286 (486)
T ss_pred chHHHHHHHHHhCCCEEEEE-CC----CCcc-------hhHHHHHHHHHhhCCCCCEEE----ecc-CCHHHH----HHH
Confidence 45677888889999977542 22 2332 345666677777664444444 333 577777 456
Q ss_pred HHHhCCCEEEeCCC
Q 026125 180 LKEGGMDAIKLEGG 193 (243)
Q Consensus 180 ~keaGAdaVKLEGg 193 (243)
+ ++|||+|++-+|
T Consensus 287 ~-~aGad~i~vg~g 299 (486)
T PRK05567 287 I-EAGADAVKVGIG 299 (486)
T ss_pred H-HcCCCEEEECCC
Confidence 6 699999998433
No 144
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=90.04 E-value=5 Score=35.87 Aligned_cols=95 Identities=20% Similarity=0.218 Sum_probs=62.6
Q ss_pred HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 026125 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (243)
Q Consensus 107 iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGA 185 (243)
...+.|+|.|++..+.|= -..+|.+|-..-++.+++.++ +..|++.... .+.+++++.|... ++.||
T Consensus 26 ~l~~~Gv~gi~~~GstGE-------~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~----~~~~~~i~~a~~a-~~~Ga 93 (281)
T cd00408 26 FLIEAGVDGLVVLGTTGE-------APTLTDEERKEVIEAVVEAVAGRVPVIAGVGA----NSTREAIELARHA-EEAGA 93 (281)
T ss_pred HHHHcCCCEEEECCCCcc-------cccCCHHHHHHHHHHHHHHhCCCCeEEEecCC----ccHHHHHHHHHHH-HHcCC
Confidence 345569999987766643 236788998877777777654 3345655432 3678898888655 47999
Q ss_pred CEEEeCCCC------CchHHHHHHHHH-cCCceee
Q 026125 186 DAIKLEGGS------PSRITAARGIVE-AGIAVMG 213 (243)
Q Consensus 186 daVKLEGg~------~~~~~~i~~L~~-~GIPV~G 213 (243)
|+|-+---. +......+.+.+ .++||+=
T Consensus 94 d~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~i 128 (281)
T cd00408 94 DGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVIL 128 (281)
T ss_pred CEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 999885431 122333455666 4799984
No 145
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=90.02 E-value=7.7 Score=36.89 Aligned_cols=95 Identities=15% Similarity=0.297 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHcCC--CEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe-eCCCCCCcCCHHHHHHHH
Q 026125 100 YDYPSAVHLDSAGI--DICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG-DLPFGTYESSTNQAVDTA 176 (243)
Q Consensus 100 YD~~sA~iae~AGi--DiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa-DmPfgsY~~s~e~Av~nA 176 (243)
-|+..+...-+||+ |+|.+--+. |+. +.+.+..+.|++-.|..+|++ |.- |.|++
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~a~-----gh~-------~~~~e~I~~ir~~~p~~~vi~g~V~------t~e~a---- 154 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDIAH-----GHS-------DSVINMIQHIKKHLPETFVIAGNVG------TPEAV---- 154 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCC-----Cch-------HHHHHHHHHHHhhCCCCeEEEEecC------CHHHH----
Confidence 56678888888865 999872111 222 223444567888888666775 642 66776
Q ss_pred HHHHHHhCCCEEEeCCCCCc---------------hHHHHHHHHH-cCCceeeccCC
Q 026125 177 VRILKEGGMDAIKLEGGSPS---------------RITAARGIVE-AGIAVMGHVGL 217 (243)
Q Consensus 177 ~Rl~keaGAdaVKLEGg~~~---------------~~~~i~~L~~-~GIPV~GHiGL 217 (243)
.+++ ++|||++++-++... ....++.+.+ ..|||++-=|+
T Consensus 155 ~~l~-~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI 210 (326)
T PRK05458 155 RELE-NAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGI 210 (326)
T ss_pred HHHH-HcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCC
Confidence 5566 699999996533221 1223455554 36888876554
No 146
>PRK08185 hypothetical protein; Provisional
Probab=89.99 E-value=5.4 Score=37.15 Aligned_cols=111 Identities=16% Similarity=0.238 Sum_probs=72.8
Q ss_pred CCCcEEEE--ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc---CCCc--EEeeCCC
Q 026125 90 NGEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA---KRPL--LVGDLPF 162 (243)
Q Consensus 90 ~g~~Itml--TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga---~~~f--vVaDmPf 162 (243)
..-|+++= -+.|+...+-+=++||+-+.+-.| ..+++|-+..++.|++-+ .-++ =++-++.
T Consensus 67 ~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S------------~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~ 134 (283)
T PRK08185 67 SPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGS------------LLPYEENVALTKEVVELAHKVGVSVEGELGTIGN 134 (283)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCC------------CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccC
Confidence 44564443 456777788888889998877644 358999999999988422 2221 1122221
Q ss_pred ---C-----C---CcCCHHHHHHHHHHHHHHhCCCEEEe---------CCC--CCchHHHHHHHHHc-CCceeeccCC
Q 026125 163 ---G-----T---YESSTNQAVDTAVRILKEGGMDAIKL---------EGG--SPSRITAARGIVEA-GIAVMGHVGL 217 (243)
Q Consensus 163 ---g-----s---Y~~s~e~Av~nA~Rl~keaGAdaVKL---------EGg--~~~~~~~i~~L~~~-GIPV~GHiGL 217 (243)
+ + | .++++| .+++++.|+|++=+ +++ .....+.++.|.++ +||++-|=|-
T Consensus 135 ~e~~~~~~~~~~~~-t~peea----~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgs 207 (283)
T PRK08185 135 TGTSIEGGVSEIIY-TDPEQA----EDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGS 207 (283)
T ss_pred cccccccccccccC-CCHHHH----HHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCC
Confidence 1 1 5 488888 68888889999888 332 22345567777766 8999999554
No 147
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=89.94 E-value=3.6 Score=38.32 Aligned_cols=88 Identities=16% Similarity=0.236 Sum_probs=54.2
Q ss_pred HHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC
Q 026125 83 HLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (243)
Q Consensus 83 ~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP 161 (243)
.++..|+.|. .++..+.+...|+.++++|+|+|.+ |--. -||... .+. +...+.|++..+.| |+++=
T Consensus 101 ~i~~lk~~g~-~v~~~v~s~~~a~~a~~~GaD~Ivv~g~ea----gGh~g~--~~~---~~ll~~v~~~~~iP-viaaG- 168 (307)
T TIGR03151 101 YIPRLKENGV-KVIPVVASVALAKRMEKAGADAVIAEGMES----GGHIGE--LTT---MALVPQVVDAVSIP-VIAAG- 168 (307)
T ss_pred HHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEEECccc----CCCCCC--CcH---HHHHHHHHHHhCCC-EEEEC-
Confidence 3445555554 4677889999999999999998864 5322 233211 111 33445566666667 55553
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 162 FGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 162 fgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
+. .+.+++ ...+. .|||+|.+
T Consensus 169 --GI-~~~~~~----~~al~-~GA~gV~i 189 (307)
T TIGR03151 169 --GI-ADGRGM----AAAFA-LGAEAVQM 189 (307)
T ss_pred --CC-CCHHHH----HHHHH-cCCCEeec
Confidence 44 355655 44553 79999987
No 148
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=89.83 E-value=10 Score=34.66 Aligned_cols=123 Identities=19% Similarity=0.216 Sum_probs=69.6
Q ss_pred HHHhhhCCC--cEEEEecCC--HH----HHHHHHHcCCCEEEeCcchhh---------hhccCCCCccCCHHHHHHHHHH
Q 026125 84 LRQKHKNGE--PITMVTAYD--YP----SAVHLDSAGIDICLVGDSAAM---------VVHGHDTTLPITLEEMLVHCRA 146 (243)
Q Consensus 84 Lr~~kk~g~--~ItmlTAYD--~~----sA~iae~AGiDiILVGDSlgm---------v~lG~~dT~~vTldeMi~h~~a 146 (243)
|++.+++++ .|.-+|+=| .. .+...++.|+|+|=+|-..+- -..-..=-..+++++.+...+.
T Consensus 3 ~~~~~~~~~~~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~ 82 (258)
T PRK13111 3 FAALKAEGRKALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVRE 82 (258)
T ss_pred hHHHHhcCCccEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344444444 455556633 22 255677899999976643311 0000000123588888999999
Q ss_pred HH-cccCCCcEEeeCCCCCCcCCH-HH-HHHHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHHcCCcee
Q 026125 147 VA-RGAKRPLLVGDLPFGTYESST-NQ-AVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVM 212 (243)
Q Consensus 147 V~-Rga~~~fvVaDmPfgsY~~s~-e~-Av~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~~GIPV~ 212 (243)
++ +..+.|++ +++|- |+ .+ .++.-.+.++++|+|++-+-|=. ++....++++.+.|+..+
T Consensus 83 ~r~~~~~~p~v-----lm~Y~-N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I 146 (258)
T PRK13111 83 IREKDPTIPIV-----LMTYY-NPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLI 146 (258)
T ss_pred HHhcCCCCCEE-----EEecc-cHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEE
Confidence 98 54555643 22442 32 12 34444667778999999997743 223455566667776665
No 149
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=89.79 E-value=4.2 Score=40.11 Aligned_cols=96 Identities=20% Similarity=0.168 Sum_probs=58.8
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
-..+-++|+|++-+-|++.-+- .++++ ++.+++.-...-+....-++.+ .+++..++.|.++. +.|
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~---------n~~~~---v~~ak~~G~~v~~~i~~t~~p~-~~~~~~~~~a~~l~-~~G 167 (448)
T PRK12331 102 VQKSVENGIDIIRIFDALNDVR---------NLETA---VKATKKAGGHAQVAISYTTSPV-HTIDYFVKLAKEMQ-EMG 167 (448)
T ss_pred HHHHHHCCCCEEEEEEecCcHH---------HHHHH---HHHHHHcCCeEEEEEEeecCCC-CCHHHHHHHHHHHH-HcC
Confidence 3556788999999998885541 14443 3444332111111122223344 47888888888776 699
Q ss_pred CCEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 185 MDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 185 AdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
||.|.|-|-.. .+..+|++|.++ ++|+--|
T Consensus 168 ad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~H 203 (448)
T PRK12331 168 ADSICIKDMAGILTPYVAYELVKRIKEAVTVPLEVH 203 (448)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 99999998743 244556666553 6777666
No 150
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=89.65 E-value=4.2 Score=35.32 Aligned_cols=84 Identities=17% Similarity=0.151 Sum_probs=43.7
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE---ee---CCCCCCcCCHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV---GD---LPFGTYESSTNQAVDTAV 177 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV---aD---mPfgsY~~s~e~Av~nA~ 177 (243)
.|+.++++|+..+.++ ++ ...++|++.++.||+. -| .||--| .+.+++
T Consensus 28 ~a~a~~~~G~~~~~~~----------------~~----~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~-~~~~~v----- 81 (221)
T PRK01130 28 MALAAVQGGAVGIRAN----------------GV----EDIKAIRAVVDVPIIGIIKRDYPDSEVYIT-PTLKEV----- 81 (221)
T ss_pred HHHHHHHCCCeEEEcC----------------CH----HHHHHHHHhCCCCEEEEEecCCCCCCceEC-CCHHHH-----
Confidence 4566777777766653 11 2334555556666541 13 234233 133333
Q ss_pred HHHHHhCCCEEEeCCCC------CchHHHHHHHHH-cCCceee
Q 026125 178 RILKEGGMDAIKLEGGS------PSRITAARGIVE-AGIAVMG 213 (243)
Q Consensus 178 Rl~keaGAdaVKLEGg~------~~~~~~i~~L~~-~GIPV~G 213 (243)
+..+++|||.|-+-... +....+++++.+ .|+|++.
T Consensus 82 ~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~ 124 (221)
T PRK01130 82 DALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMA 124 (221)
T ss_pred HHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEE
Confidence 33346777777663321 234455666666 6777663
No 151
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=89.54 E-value=7.5 Score=38.80 Aligned_cols=116 Identities=20% Similarity=0.242 Sum_probs=74.2
Q ss_pred HHHHHHhhhCCCcEEEEec---------C--C--HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHH
Q 026125 81 LTHLRQKHKNGEPITMVTA---------Y--D--YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTA---------Y--D--~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV 147 (243)
+..+++.. .+.+|.|+.- | | ..+-+.+.+.|+|++-|.|++ -.++-|..+++++
T Consensus 75 lr~~r~~~-~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~l------------nd~~n~~~ai~~a 141 (468)
T PRK12581 75 LRTLKKGL-PNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDAL------------NDPRNIQQALRAV 141 (468)
T ss_pred HHHHHHhC-CCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccC------------CCHHHHHHHHHHH
Confidence 55666654 4567777743 2 3 123677788999999999977 2567788888888
Q ss_pred HcccCCC-cEE--eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 148 ARGAKRP-LLV--GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 148 ~Rga~~~-fvV--aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
++.-... +.+ .+-| . -+.+-.++.|.++. +.|||.|.|-|-.. .+..++++|.+. ++|+--|
T Consensus 142 k~~G~~~~~~i~yt~sp---~-~t~~y~~~~a~~l~-~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~H 212 (468)
T PRK12581 142 KKTGKEAQLCIAYTTSP---V-HTLNYYLSLVKELV-EMGADSICIKDMAGILTPKAAKELVSGIKAMTNLPLIVH 212 (468)
T ss_pred HHcCCEEEEEEEEEeCC---c-CcHHHHHHHHHHHH-HcCCCEEEECCCCCCcCHHHHHHHHHHHHhccCCeEEEE
Confidence 7633221 111 2222 1 24555777777666 69999999998733 244566777654 4777666
No 152
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=89.51 E-value=7.7 Score=33.59 Aligned_cols=78 Identities=23% Similarity=0.205 Sum_probs=45.6
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEE-eeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLV-GDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvV-aDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
+.-|-+.|+|.|-+-=..|...-| ..+++.....+|++.+. .|+.+ ..++. . + ++-+..|.|+..|
T Consensus 75 ve~A~~~GAdevdvv~~~g~~~~~-------~~~~~~~ei~~v~~~~~g~~lkvI~e~~~--l--~-~~~i~~a~ria~e 142 (203)
T cd00959 75 AREAIADGADEIDMVINIGALKSG-------DYEAVYEEIAAVVEACGGAPLKVILETGL--L--T-DEEIIKACEIAIE 142 (203)
T ss_pred HHHHHHcCCCEEEEeecHHHHhCC-------CHHHHHHHHHHHHHhcCCCeEEEEEecCC--C--C-HHHHHHHHHHHHH
Confidence 455667799988432222221111 33556666666766654 33322 34333 2 4 3457777888889
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
+|||.||..-|.
T Consensus 143 ~GaD~IKTsTG~ 154 (203)
T cd00959 143 AGADFIKTSTGF 154 (203)
T ss_pred hCCCEEEcCCCC
Confidence 999999998553
No 153
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=89.44 E-value=16 Score=34.18 Aligned_cols=147 Identities=8% Similarity=0.073 Sum_probs=90.1
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-
Q 026125 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK- 152 (243)
Q Consensus 79 ~tv~~-Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~- 152 (243)
+++.+ |+..++++--+-..++||..+++ .||+.+.++|+--..-..-. - ..++.+...+++.++..+
T Consensus 4 v~~~~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~---~----~~~~~~~~~~~~~a~~~~~ 76 (285)
T PRK07709 4 VSMKEMLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARH---M----TGFKTVVAMVKALIEEMNI 76 (285)
T ss_pred CcHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchhhh---c----CCHHHHHHHHHHHHHHcCC
Confidence 45555 45567788889999999999985 57888999987331111111 0 235556666677766554
Q ss_pred -CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCccccccc
Q 026125 153 -RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQAISV 224 (243)
Q Consensus 153 -~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ~~~~ 224 (243)
-| |+.-+..+. +.+.+ .+.+ ++|.+.|.+.|+..- +-.+++..-..||+|=|=||-++..-.-
T Consensus 77 ~VP-V~lHLDHg~---~~e~i----~~ai-~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~ 147 (285)
T PRK07709 77 TVP-VAIHLDHGS---SFEKC----KEAI-DAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDD 147 (285)
T ss_pred CCc-EEEECCCCC---CHHHH----HHHH-HcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCC
Confidence 35 678887732 44554 4667 489999999888432 2234555556799998777777643211
Q ss_pred ccCccccccCHHhhccc
Q 026125 225 LGGFRPQGKNVTSAVKV 241 (243)
Q Consensus 225 ~GGykvqGkt~~~A~~l 241 (243)
..+-..--.+.|+|+++
T Consensus 148 ~~~~~~~yT~peeA~~F 164 (285)
T PRK07709 148 VIAEGVIYADPAECKHL 164 (285)
T ss_pred cccccccCCCHHHHHHH
Confidence 00001112567777664
No 154
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=89.42 E-value=2.3 Score=40.94 Aligned_cols=70 Identities=11% Similarity=0.193 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHc--CCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHH
Q 026125 100 YDYPSAVHLDSA--GIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAV 177 (243)
Q Consensus 100 YD~~sA~iae~A--GiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~ 177 (243)
-|+..+...-++ |+|.|.+- +.+||.. -++...+.|++-.|.++|++. .- .++|+| .
T Consensus 107 ~d~er~~~L~~a~~~~d~iviD-----~AhGhs~-------~~i~~ik~ir~~~p~~~viaG----NV-~T~e~a----~ 165 (343)
T TIGR01305 107 NDLEKMTSILEAVPQLKFICLD-----VANGYSE-------HFVEFVKLVREAFPEHTIMAG----NV-VTGEMV----E 165 (343)
T ss_pred HHHHHHHHHHhcCCCCCEEEEE-----CCCCcHH-------HHHHHHHHHHhhCCCCeEEEe----cc-cCHHHH----H
Confidence 566677766677 59999874 2355544 356677788888888888864 34 577887 5
Q ss_pred HHHHHhCCCEEEeC
Q 026125 178 RILKEGGMDAIKLE 191 (243)
Q Consensus 178 Rl~keaGAdaVKLE 191 (243)
+++ ++|||+||+-
T Consensus 166 ~Li-~aGAD~ikVg 178 (343)
T TIGR01305 166 ELI-LSGADIVKVG 178 (343)
T ss_pred HHH-HcCCCEEEEc
Confidence 666 6999999975
No 155
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=89.42 E-value=8.5 Score=36.49 Aligned_cols=115 Identities=12% Similarity=0.043 Sum_probs=69.2
Q ss_pred CcEEEEecCCHHHHHHHHHcCCCEEEeCcchhh----hhccCCCCccCCHHHHHHHHHH-HHcccCC-CcEEeeCCCCCC
Q 026125 92 EPITMVTAYDYPSAVHLDSAGIDICLVGDSAAM----VVHGHDTTLPITLEEMLVHCRA-VARGAKR-PLLVGDLPFGTY 165 (243)
Q Consensus 92 ~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgm----v~lG~~dT~~vTldeMi~h~~a-V~Rga~~-~fvVaDmPfgsY 165 (243)
.+++++.-.+..-...+.++|+|.|-+-.+.+- ..+| .|.+|++..+.. |..+... ..+..+.++.+.
T Consensus 65 ~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~------~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r 138 (365)
T TIGR02660 65 ARLMAWCRARDADIEAAARCGVDAVHISIPVSDLQIEAKLR------KDRAWVLERLARLVSFARDRGLFVSVGGEDASR 138 (365)
T ss_pred cEEEEEcCCCHHHHHHHHcCCcCEEEEEEccCHHHHHHHhC------cCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCC
Confidence 455665545666677788899998855544431 2222 345665543322 2211111 124577888655
Q ss_pred cCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 166 ESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 166 ~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
.+++..++.+.++. +.||+.|.|-|-.. ....+++.|.+. ++|+--|
T Consensus 139 -~~~~~l~~~~~~~~-~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~v~l~~H 191 (365)
T TIGR02660 139 -ADPDFLVELAEVAA-EAGADRFRFADTVGILDPFSTYELVRALRQAVDLPLEMH 191 (365)
T ss_pred -CCHHHHHHHHHHHH-HcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 68888888777665 69999999998632 344556777654 5665444
No 156
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=89.31 E-value=7.5 Score=37.02 Aligned_cols=100 Identities=17% Similarity=0.157 Sum_probs=62.6
Q ss_pred CCHHHHHHhhh-CCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 79 VTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 79 ~tv~~Lr~~kk-~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
.+..+++..++ -+.||.+=++-+...|+.+.++|+|.|.|...-|+.. |...-|++-+..-.+.+....+.-.|+
T Consensus 200 ~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~----d~~~~~~~~L~~i~~~~~~~~~~~~vi 275 (344)
T cd02922 200 LTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQL----DTAPAPIEVLLEIRKHCPEVFDKIEVY 275 (344)
T ss_pred CCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccC----CCCCCHHHHHHHHHHHHHHhCCCceEE
Confidence 56677776654 3468888899999999999999999998776666653 222334332222212121111223377
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
+|= +. .+..++ .+.+ ..||++|-+-
T Consensus 276 ~~G---GI-r~G~Dv----~kal-aLGA~aV~iG 300 (344)
T cd02922 276 VDG---GV-RRGTDV----LKAL-CLGAKAVGLG 300 (344)
T ss_pred EeC---CC-CCHHHH----HHHH-HcCCCEEEEC
Confidence 874 44 356777 4566 4899999884
No 157
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=89.27 E-value=5.1 Score=36.77 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=53.7
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
.+..+|+.. ..+++.-+.+++...|.-+.++|+|.|+.| +++.|++-.-++.+.. +.|++..
T Consensus 171 ~v~~~r~~~-~~~~~Igvev~s~eea~~A~~~gaDyI~ld--------------~~~~e~l~~~~~~~~~--~ipi~Ai- 232 (268)
T cd01572 171 AVRRARAAA-PFTLKIEVEVETLEQLKEALEAGADIIMLD--------------NMSPEELREAVALLKG--RVLLEAS- 232 (268)
T ss_pred HHHHHHHhC-CCCCeEEEEECCHHHHHHHHHcCCCEEEEC--------------CcCHHHHHHHHHHcCC--CCcEEEE-
Confidence 455666653 335678999999999999999999999997 3456665443333321 2343222
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
|+ .|++++ ..+. ++|+|+|-+
T Consensus 233 ---GG--I~~~ni----~~~a-~~Gvd~Iav 253 (268)
T cd01572 233 ---GG--ITLENI----RAYA-ETGVDYISV 253 (268)
T ss_pred ---CC--CCHHHH----HHHH-HcCCCEEEE
Confidence 22 355554 5555 589999865
No 158
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=89.23 E-value=5.2 Score=38.68 Aligned_cols=98 Identities=17% Similarity=0.161 Sum_probs=65.8
Q ss_pred CCCHHHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 78 RVTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 78 ~~tv~~Lr~~kk~-g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
.+|..+|+.+++. +-||++=..-+...|..+.++|+|.|.|+-.-|... |..+.+++.+..-.+++. +...|
T Consensus 214 ~~~w~~i~~l~~~~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGrq~----~~~~a~~~~L~ei~~av~---~~i~v 286 (367)
T TIGR02708 214 KLSPRDIEEIAGYSGLPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQL----DGGPAAFDSLQEVAEAVD---KRVPI 286 (367)
T ss_pred CCCHHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCccCC----CCCCcHHHHHHHHHHHhC---CCCcE
Confidence 4677888776543 568888888889999999999999987765555333 334556665544333331 22337
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
++|=.. .+..++ .+.+. .||++|-+-
T Consensus 287 i~dGGI----r~g~Dv----~KaLa-lGAd~V~ig 312 (367)
T TIGR02708 287 VFDSGV----RRGQHV----FKALA-SGADLVALG 312 (367)
T ss_pred EeeCCc----CCHHHH----HHHHH-cCCCEEEEc
Confidence 888544 356777 45663 899999873
No 159
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=89.20 E-value=17 Score=32.94 Aligned_cols=127 Identities=12% Similarity=0.167 Sum_probs=72.2
Q ss_pred HHHHhhhCCCcEEEEecCCHHH---H-HHHHHcCCCEE-E-eCcchh-hhhccCCCCccCCHHHHHHHHHHHHcccCCCc
Q 026125 83 HLRQKHKNGEPITMVTAYDYPS---A-VHLDSAGIDIC-L-VGDSAA-MVVHGHDTTLPITLEEMLVHCRAVARGAKRPL 155 (243)
Q Consensus 83 ~Lr~~kk~g~~ItmlTAYD~~s---A-~iae~AGiDiI-L-VGDSlg-mv~lG~~dT~~vTldeMi~h~~aV~Rga~~~f 155 (243)
.+.+.++....++-+..-|... + ..+++ ++|+| + +|=... ++-.|+-..+.-..+-+...+++|+. .+.|
T Consensus 60 e~~~~~~~~~vivnv~~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~P- 136 (231)
T TIGR00736 60 QIKKAESRALVSVNVRFVDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKP- 136 (231)
T ss_pred HHHHHhhcCCEEEEEecCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCc-
Confidence 3445543444444444434433 2 33433 78888 3 443332 12223333334455666777778874 4556
Q ss_pred EEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc----hHHHHHHHHHc--CCceeeccC
Q 026125 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS----RITAARGIVEA--GIAVMGHVG 216 (243)
Q Consensus 156 vVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~----~~~~i~~L~~~--GIPV~GHiG 216 (243)
|.+=+.-+ + +.++.++.|.++. ++|||+|.++..... ....|+.+.++ .|||+|==|
T Consensus 137 VsvKiR~~-~--~~~~~~~~a~~l~-~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGg 199 (231)
T TIGR00736 137 IFVKIRGN-C--IPLDELIDALNLV-DDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNS 199 (231)
T ss_pred EEEEeCCC-C--CcchHHHHHHHHH-HcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECC
Confidence 55555542 2 3355666666555 799999999866531 34668888887 499998533
No 160
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=89.09 E-value=7.5 Score=39.64 Aligned_cols=117 Identities=18% Similarity=0.239 Sum_probs=72.3
Q ss_pred HHHHHHhhhCCCcEEEEec------C-----C--HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHH
Q 026125 81 LTHLRQKHKNGEPITMVTA------Y-----D--YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTA------Y-----D--~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV 147 (243)
+..|++.. .+.++.|+.= | | ..+-+.+-++|+|++-+-|++.-+ +.|....+.+
T Consensus 61 l~~l~~~~-~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~------------~n~~~~i~~a 127 (582)
T TIGR01108 61 LRELKKAL-PNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALNDP------------RNLQAAIQAA 127 (582)
T ss_pred HHHHHHhC-CCCEEEEEEccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHH
Confidence 44454432 4578888731 2 2 123466778899999999888542 4566666666
Q ss_pred HcccCCCcEEe--eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 148 ARGAKRPLLVG--DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 148 ~Rga~~~fvVa--DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
+..- .- +.+ .+-|..| .+++..++.+.++. ++|||.|.|-|-.. .+..++++|.+. ++|+--|
T Consensus 128 k~~G-~~-v~~~i~~t~~p~-~~~~~~~~~~~~~~-~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi~~H 198 (582)
T TIGR01108 128 KKHG-AH-AQGTISYTTSPV-HTLETYLDLAEELL-EMGVDSICIKDMAGILTPKAAYELVSALKKRFGLPVHLH 198 (582)
T ss_pred HHcC-CE-EEEEEEeccCCC-CCHHHHHHHHHHHH-HcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCCCceEEE
Confidence 5422 21 222 2223334 37788888887776 69999999998732 344566777654 5776555
No 161
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=89.09 E-value=18 Score=33.67 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=78.9
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-
Q 026125 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA- 151 (243)
Q Consensus 79 ~tv~~-Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga- 151 (243)
++..+ |++.++++--+-..++|++.+++ .||+.+.++|| +..+. .-.+| .++.+...++.+.+..
T Consensus 4 v~~~~~l~~A~~~~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~-~~~~~-------~~~~~~~~~~~~a~~~~ 75 (293)
T PRK07315 4 VSAEKFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGA-AKYMG-------GYKVCKNLIENLVESMG 75 (293)
T ss_pred CcHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccH-HhhcC-------cHHHHHHHHHHHHHHcC
Confidence 45555 45566777789999999999984 57888999997 43322 11112 1445566666666655
Q ss_pred -CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCc
Q 026125 152 -KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLT 218 (243)
Q Consensus 152 -~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLt 218 (243)
+-| |+.-+..+++ +.. .+.+ ++|.+.|.+.+.... +..+++..-..|++|-+=+|-+
T Consensus 76 ~~vP-V~lHLDH~~~----~~i----~~ai-~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i 140 (293)
T PRK07315 76 ITVP-VAIHLDHGHY----EDA----LECI-EVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTI 140 (293)
T ss_pred CCCc-EEEECCCCCH----HHH----HHHH-HcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcc
Confidence 345 6788888643 322 3456 489999999887432 2233333445899999988844
No 162
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=89.07 E-value=10 Score=34.05 Aligned_cols=101 Identities=16% Similarity=0.276 Sum_probs=66.4
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHc-ccCCCcEE
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR-GAKRPLLV 157 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R-ga~~~fvV 157 (243)
+.-++.+.++|-++.+-.+|+...|.+|.++|+|.|. || .+. -+|.+ .++.+....+.+++ +.+..++.
T Consensus 93 l~A~~~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvg-R~~--~~g~d-----g~~~i~~i~~~~~~~~~~tkILa 164 (220)
T PRK12653 93 LAAIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAPYVN-RID--AQGGS-----GIQTVTDLQQLLKMHAPQAKVLA 164 (220)
T ss_pred HHHHHHHHHcCCCeeEEEecCHHHHHHHHhcCCcEEEeecC-hHh--hcCCC-----hHHHHHHHHHHHHhcCCCcEEEE
Confidence 6667788889999999999999999999999999984 66 221 12222 33333333333433 33434333
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE 206 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~ 206 (243)
+ |+ .|+++.+ +.+ ..|+|.+-+- +++++.|.+
T Consensus 165 A-----S~-r~~~~v~----~~~-~~G~d~vTip------~~vl~~l~~ 196 (220)
T PRK12653 165 A-----SF-KTPRQAL----DCL-LAGCESITLP------LDVAQQMIS 196 (220)
T ss_pred E-----ec-CCHHHHH----HHH-HcCCCEEECC------HHHHHHHHc
Confidence 3 67 5889985 445 3899999885 445666654
No 163
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=89.00 E-value=6.6 Score=37.51 Aligned_cols=117 Identities=16% Similarity=0.083 Sum_probs=68.1
Q ss_pred EEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-C-CcEEeeCCCCCCcCCHHH
Q 026125 94 ITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-R-PLLVGDLPFGTYESSTNQ 171 (243)
Q Consensus 94 ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~-~fvVaDmPfgsY~~s~e~ 171 (243)
+.+++-........+-++|+|.|-+..+.+-..+ ..-...|.+|.+..+....+-+. . ..+..+.++.+. .+++.
T Consensus 70 i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~--~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r-~~~~~ 146 (378)
T PRK11858 70 ILALNRAVKSDIDASIDCGVDAVHIFIATSDIHI--KHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASR-TDLDF 146 (378)
T ss_pred EEEEcccCHHHHHHHHhCCcCEEEEEEcCCHHHH--HHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCC-CCHHH
Confidence 3444433355566777899998865555433211 01123456776654443333211 1 225577888665 68888
Q ss_pred HHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 172 AVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 172 Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
.++-+.++. +.||+.|.|-|-.. ....+++.|.++ ++|+--|
T Consensus 147 l~~~~~~~~-~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H 194 (378)
T PRK11858 147 LIEFAKAAE-EAGADRVRFCDTVGILDPFTMYELVKELVEAVDIPIEVH 194 (378)
T ss_pred HHHHHHHHH-hCCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 887776655 79999999988632 244556666654 5665444
No 164
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=88.91 E-value=6 Score=37.65 Aligned_cols=137 Identities=8% Similarity=0.019 Sum_probs=76.1
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchh----hhhccC----CCCccCCHHH----HHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAA----MVVHGH----DTTLPITLEE----MLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlg----mv~lG~----~dT~~vTlde----Mi~h~ 144 (243)
+.+|..++.+..++ | ...|+.|.+||||.|-+--.-| ..+--+ .|-=.=++|. .++..
T Consensus 147 ~~mt~~eI~~ii~~---------f-~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv 216 (362)
T PRK10605 147 RALELEEIPGIVND---------F-RQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVV 216 (362)
T ss_pred ccCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHH
Confidence 46888888877542 1 3468889999999995421111 111111 1111124442 35666
Q ss_pred HHHHcccCCCcEEeeC------CCCCCcCCHHH-HHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHH-cCCce
Q 026125 145 RAVARGAKRPLLVGDL------PFGTYESSTNQ-AVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVE-AGIAV 211 (243)
Q Consensus 145 ~aV~Rga~~~fvVaDm------PfgsY~~s~e~-Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~-~GIPV 211 (243)
++|++.++.-+|..=| ++..-+.+.++ +++-+..|. +.|.|.|.+..+.. ......+.+.+ -++||
T Consensus 217 ~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~-~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv 295 (362)
T PRK10605 217 DAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLG-KRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHGVI 295 (362)
T ss_pred HHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHH-HcCCCEEEeccccccCCccccHHHHHHHHHHCCCCE
Confidence 7788777654444322 11111236677 787776665 68999999987521 11222233322 36788
Q ss_pred eeccCCccccccc
Q 026125 212 MGHVGLTPQAISV 224 (243)
Q Consensus 212 ~GHiGLtPQ~~~~ 224 (243)
++-=+++|+....
T Consensus 296 ~~~G~~~~~~ae~ 308 (362)
T PRK10605 296 IGAGAYTAEKAET 308 (362)
T ss_pred EEeCCCCHHHHHH
Confidence 8776677765443
No 165
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=88.91 E-value=3.4 Score=37.17 Aligned_cols=88 Identities=15% Similarity=0.166 Sum_probs=61.2
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC--CCCCcCCHHHHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP--FGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP--fgsY~~s~e~Av~nA~Rl~ke 182 (243)
++.+.++|+|.|.+.|++|. .+-+++-...+.+++..+.+ |.| |- .+.+..-|+.|+...+ +
T Consensus 149 ~~~~~~~G~~~i~l~DT~G~----------~~P~~v~~lv~~l~~~~~~~----~i~l~~H-~Hn~~GlA~An~laAi-~ 212 (268)
T cd07940 149 VEAAIEAGATTINIPDTVGY----------LTPEEFGELIKKLKENVPNI----KVPISVH-CHNDLGLAVANSLAAV-E 212 (268)
T ss_pred HHHHHHcCCCEEEECCCCCC----------CCHHHHHHHHHHHHHhCCCC----ceeEEEE-ecCCcchHHHHHHHHH-H
Confidence 45567789999999999876 56778888888888877642 233 42 3468889999999999 5
Q ss_pred hCCCEEEeC--C-----CCCchHHHHHHHHHcC
Q 026125 183 GGMDAIKLE--G-----GSPSRITAARGIVEAG 208 (243)
Q Consensus 183 aGAdaVKLE--G-----g~~~~~~~i~~L~~~G 208 (243)
+||+.|-.. | |..-.+.++..|...|
T Consensus 213 aG~~~iD~s~~GlG~~aGN~~tE~lv~~L~~~~ 245 (268)
T cd07940 213 AGARQVECTINGIGERAGNAALEEVVMALKTRY 245 (268)
T ss_pred hCCCEEEEEeeccccccccccHHHHHHHHHhcc
Confidence 899987542 1 1112455566666654
No 166
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=88.78 E-value=3.1 Score=38.99 Aligned_cols=140 Identities=16% Similarity=0.209 Sum_probs=89.7
Q ss_pred CCHHHHHHhhhCC-CcEEEEecCCH-----HHHHHHHHcCCCEEE-eCcchhhhhccCCCC-ccCCHHHHH-HHHHHHHc
Q 026125 79 VTLTHLRQKHKNG-EPITMVTAYDY-----PSAVHLDSAGIDICL-VGDSAAMVVHGHDTT-LPITLEEML-VHCRAVAR 149 (243)
Q Consensus 79 ~tv~~Lr~~kk~g-~~ItmlTAYD~-----~sA~iae~AGiDiIL-VGDSlgmv~lG~~dT-~~vTldeMi-~h~~aV~R 149 (243)
..+.+|+..|+.| +-|+=+|+.++ .-.+++++.|+.+|. +|.=.... +|+- ...+.||+. ...+.+..
T Consensus 39 ~~~~El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~II~~TG~y~~~~---~p~~~~~~s~e~la~~~i~Ei~~ 115 (308)
T PF02126_consen 39 AAVAELKEFKAAGGRTIVDATPIGLGRDVEALREISRRTGVNIIASTGFYKEPF---YPEWVREASVEELADLFIREIEE 115 (308)
T ss_dssp HHHHHHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHHHT-EEEEEEEE-SGGC---SCHHHHTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHHhCCeEEEeCCCCcccc---CChhhhcCCHHHHHHHHHHHHHh
Confidence 3455666665554 77888898775 468899999999995 88644322 2322 456677765 45677888
Q ss_pred ccCCC-----cEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC-EEEeCCCCCchHHHHHHHHHcCCc----eeeccCCcc
Q 026125 150 GAKRP-----LLVGDLPFGTYESSTNQAVDTAVRILKEGGMD-AIKLEGGSPSRITAARGIVEAGIA----VMGHVGLTP 219 (243)
Q Consensus 150 ga~~~-----fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd-aVKLEGg~~~~~~~i~~L~~~GIP----V~GHiGLtP 219 (243)
|.+.+ +|=.-..+.......+..++.|.|.-++.||- .++.+.|......+++-|.++|++ |+||+...|
T Consensus 116 GidgT~ikaG~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~~~~~e~~~il~e~Gv~~~rvvigH~D~~~ 195 (308)
T PF02126_consen 116 GIDGTGIKAGIIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRGTRMGLEQLDILEEEGVDPSRVVIGHMDRNP 195 (308)
T ss_dssp -STTSSB-ESEEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTTGTCHHHHHHHHHHTT--GGGEEETSGGGST
T ss_pred cCCCCccchhheeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCCCcCHHHHHHHHHHcCCChhHeEEeCCCCCC
Confidence 77643 22221122334335567999999999999965 467888864567778999999998 899999888
Q ss_pred cc
Q 026125 220 QA 221 (243)
Q Consensus 220 Q~ 221 (243)
..
T Consensus 196 D~ 197 (308)
T PF02126_consen 196 DL 197 (308)
T ss_dssp -H
T ss_pred CH
Confidence 73
No 167
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=88.75 E-value=3.4 Score=39.95 Aligned_cols=60 Identities=22% Similarity=0.419 Sum_probs=43.7
Q ss_pred HHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC----CchHHHHHHHHHcCCce
Q 026125 141 LVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS----PSRITAARGIVEAGIAV 211 (243)
Q Consensus 141 i~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~----~~~~~~i~~L~~~GIPV 211 (243)
..-.+.|++-.+.| +|+|.=|- | .- |.+.+ +.|+|.+.|--|. +....++++..+.|||+
T Consensus 63 A~A~~~Ik~~~~vP-LVaDiHf~-~----rl----a~~~~-~~g~~k~RINPGNig~~~~v~~vVe~Ak~~g~pi 126 (361)
T COG0821 63 AEALKEIKQRLNVP-LVADIHFD-Y----RL----ALEAA-ECGVDKVRINPGNIGFKDRVREVVEAAKDKGIPI 126 (361)
T ss_pred HHHHHHHHHhCCCC-EEEEeecc-H----HH----HHHhh-hcCcceEEECCcccCcHHHHHHHHHHHHHcCCCE
Confidence 34446677777777 79999883 5 22 34555 5889999998772 34567788889999998
No 168
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=88.73 E-value=18 Score=32.78 Aligned_cols=114 Identities=19% Similarity=0.150 Sum_probs=77.3
Q ss_pred HHHhhhCCCcEEE--EecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC
Q 026125 84 LRQKHKNGEPITM--VTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (243)
Q Consensus 84 Lr~~kk~g~~Itm--lTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP 161 (243)
|+++.++|++..- ++-.+...+.++..+|+|.+++=- -.++.+++++..+++++..+--.+ ++=.|
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~G~D~v~iD~----------EHg~~~~~~~~~~~~a~~~~g~~~--~VRvp 70 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGLAGFDWLLLDG----------EHAPNDVLTFIPQLMALKGSASAP--VVRPP 70 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEEec----------ccCCCCHHHHHHHHHHHhhcCCCc--EEECC
Confidence 6777788887543 566888999999999999998741 234778899888888876433233 44556
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHH-HcCCceeeccCCccc
Q 026125 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIV-EAGIAVMGHVGLTPQ 220 (243)
Q Consensus 162 fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~-~~GIPV~GHiGLtPQ 220 (243)
.. ++... .|.+ +.||++|.+--=. ..++ +++++ ..--|=.|.=|+-|-
T Consensus 71 ~~----~~~~i----~r~L-D~Ga~gIivP~v~-taee-a~~~v~a~kypP~G~Rg~~~~ 119 (249)
T TIGR03239 71 WN----EPVII----KRLL-DIGFYNFLIPFVE-SAEE-AERAVAATRYPPEGIRGVSVS 119 (249)
T ss_pred CC----CHHHH----HHHh-cCCCCEEEecCcC-CHHH-HHHHHHHcCCCCCCcCCCCcc
Confidence 63 33444 6777 6999999876543 3444 34444 455677777777663
No 169
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=88.71 E-value=3.6 Score=38.10 Aligned_cols=92 Identities=25% Similarity=0.253 Sum_probs=62.1
Q ss_pred CHHHHHHhhhCCCcEEEE-ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 80 TLTHLRQKHKNGEPITMV-TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 80 tv~~Lr~~kk~g~~Itml-TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
|+.--..+.++| ..+++ |--|..-|+-.+++||-.+.=..+--.+-+|..+. +..+-++..++-| ||+
T Consensus 119 tl~Aae~Lv~eG-F~VlPY~~dD~v~arrLee~GcaavMPl~aPIGSg~G~~n~---------~~l~iiie~a~VP-viV 187 (262)
T COG2022 119 TLKAAEQLVKEG-FVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGSGLGLQNP---------YNLEIIIEEADVP-VIV 187 (262)
T ss_pred HHHHHHHHHhCC-CEEeeccCCCHHHHHHHHhcCceEeccccccccCCcCcCCH---------HHHHHHHHhCCCC-EEE
Confidence 455555566665 55666 55678899999999999997322333344566653 4556677777777 788
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
|-..|+ +.+| ...| |-|+|+|-+-
T Consensus 188 DAGiG~----pSdA----a~aM-ElG~DaVL~N 211 (262)
T COG2022 188 DAGIGT----PSDA----AQAM-ELGADAVLLN 211 (262)
T ss_pred eCCCCC----hhHH----HHHH-hcccceeehh
Confidence 987754 4555 3567 6999999875
No 170
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=88.65 E-value=7.3 Score=37.34 Aligned_cols=91 Identities=22% Similarity=0.276 Sum_probs=50.8
Q ss_pred Cc-EEEEecC-C----HHHHHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC
Q 026125 92 EP-ITMVTAY-D----YPSAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (243)
Q Consensus 92 ~~-ItmlTAY-D----~~sA~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg 163 (243)
.| |+-+... | .-.|+.++++|+|+|= +|-......-|.-....-.-+.+..-+++|++.++.| |.+=|+-
T Consensus 100 ~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~P-v~vKl~p- 177 (420)
T PRK08318 100 RALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLP-VIVKLTP- 177 (420)
T ss_pred ceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCc-EEEEcCC-
Confidence 44 4444555 4 2346777889999994 3322111111222222234566777788888887777 4555543
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEE
Q 026125 164 TYESSTNQAVDTAVRILKEGGMDAIK 189 (243)
Q Consensus 164 sY~~s~e~Av~nA~Rl~keaGAdaVK 189 (243)
.+ .+..+. .+.++++|||+|-
T Consensus 178 ~~-~~~~~~----a~~~~~~Gadgi~ 198 (420)
T PRK08318 178 NI-TDIREP----ARAAKRGGADAVS 198 (420)
T ss_pred Cc-ccHHHH----HHHHHHCCCCEEE
Confidence 22 232222 3455579999998
No 171
>PLN02417 dihydrodipicolinate synthase
Probab=88.55 E-value=10 Score=34.50 Aligned_cols=104 Identities=14% Similarity=0.163 Sum_probs=67.2
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
.-+.|+|-|+++.|.|- .-.+|.||-..-.+.+++.++ +..|++...- .|.+++++.+...- +.|||
T Consensus 31 l~~~Gv~Gi~~~GstGE-------~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~----~~t~~~i~~a~~a~-~~Gad 98 (280)
T PLN02417 31 QIENGAEGLIVGGTTGE-------GQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGS----NSTREAIHATEQGF-AVGMH 98 (280)
T ss_pred HHHcCCCEEEECccCcc-------hhhCCHHHHHHHHHHHHHHhCCCCcEEEECCC----ccHHHHHHHHHHHH-HcCCC
Confidence 34579999988767653 235788887666665555443 3446666532 37899999886654 79999
Q ss_pred EEEeCCC------CCchHHHHHHHHHcCCcee-------eccCCccccccc
Q 026125 187 AIKLEGG------SPSRITAARGIVEAGIAVM-------GHVGLTPQAISV 224 (243)
Q Consensus 187 aVKLEGg------~~~~~~~i~~L~~~GIPV~-------GHiGLtPQ~~~~ 224 (243)
+|-+--- .+......+.+.++. ||+ .++-|.|+....
T Consensus 99 av~~~~P~y~~~~~~~i~~~f~~va~~~-pi~lYn~P~~tg~~l~~~~l~~ 148 (280)
T PLN02417 99 AALHINPYYGKTSQEGLIKHFETVLDMG-PTIIYNVPGRTGQDIPPEVIFK 148 (280)
T ss_pred EEEEcCCccCCCCHHHHHHHHHHHHhhC-CEEEEEChhHhCcCCCHHHHHH
Confidence 9988643 122333456678888 986 345566665443
No 172
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=88.54 E-value=7.3 Score=35.65 Aligned_cols=84 Identities=21% Similarity=0.181 Sum_probs=56.0
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
+..+|+.. ..++...+.+.+...|..+.++|+|+|++| +++.+++-.-.+.++.. ++..+.+.
T Consensus 171 v~~~r~~~-~~~~~I~vev~t~eea~~A~~~gaD~I~ld--------------~~~~e~l~~~v~~i~~~-~~i~i~as- 233 (269)
T cd01568 171 VKRARAAA-PFEKKIEVEVETLEEAEEALEAGADIIMLD--------------NMSPEELKEAVKLLKGL-PRVLLEAS- 233 (269)
T ss_pred HHHHHHhC-CCCCeEEEecCCHHHHHHHHHcCCCEEEEC--------------CCCHHHHHHHHHHhccC-CCeEEEEE-
Confidence 45555542 225779999999999999999999999997 34556665544444332 33334454
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
|+ .|++++ ..+. ++|||+|-+
T Consensus 234 --GG--It~~ni----~~~a-~~Gad~Isv 254 (269)
T cd01568 234 --GG--ITLENI----RAYA-ETGVDVIST 254 (269)
T ss_pred --CC--CCHHHH----HHHH-HcCCCEEEE
Confidence 22 355554 5666 589999976
No 173
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=88.50 E-value=20 Score=32.91 Aligned_cols=80 Identities=24% Similarity=0.265 Sum_probs=43.4
Q ss_pred HHHHHHHHcCCCEEEeCcchhhh--hccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMV--VHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv--~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
..|+.++++|+|+|=+-=|--+. .-|+-....-..|.+..-+++|++.++.|+. +=++- .+ ++..+- .+.+
T Consensus 117 ~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~-vKl~~-~~----~~~~~~-a~~~ 189 (299)
T cd02940 117 ELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVI-AKLTP-NI----TDIREI-ARAA 189 (299)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeE-EECCC-Cc----hhHHHH-HHHH
Confidence 34667788899988432121111 1111111223345667777888888877754 44432 12 233333 3444
Q ss_pred HHhCCCEEE
Q 026125 181 KEGGMDAIK 189 (243)
Q Consensus 181 keaGAdaVK 189 (243)
+++|||+|-
T Consensus 190 ~~~Gadgi~ 198 (299)
T cd02940 190 KEGGADGVS 198 (299)
T ss_pred HHcCCCEEE
Confidence 579999996
No 174
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=88.39 E-value=16 Score=33.80 Aligned_cols=125 Identities=15% Similarity=0.198 Sum_probs=81.6
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 026125 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 79 ~tv~~-Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~ 152 (243)
+|..+ |+..++++--+-..++||+.+++ .||+.+.++|+ +..+. .-| ..++.+...++..++.++
T Consensus 4 v~~~~~l~~A~~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~----~~~-----~~~~~~~~~~~~~a~~~~ 74 (281)
T PRK06806 4 VQMKELLKKANQENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVR----LNH-----SPLHLIGPLMVAAAKQAK 74 (281)
T ss_pred CcHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcch----hcc-----CChHHHHHHHHHHHHHCC
Confidence 45555 44556788889999999999986 57888999887 43222 111 345555555566667776
Q ss_pred CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCcccc
Q 026125 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQA 221 (243)
Q Consensus 153 ~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ~ 221 (243)
-| |..-|..+ . +.+.+ .+.+ ++|++.|.+-+.... ...+++..-+.|+||-+-+|=++|.
T Consensus 75 vp-v~lHlDH~-~--~~e~i----~~Al-~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~ 141 (281)
T PRK06806 75 VP-VAVHFDHG-M--TFEKI----KEAL-EIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGS 141 (281)
T ss_pred CC-EEEECCCC-C--CHHHH----HHHH-HcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCc
Confidence 67 67888884 2 44433 4556 589999999887432 2244455567899998555544443
No 175
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=88.32 E-value=14 Score=33.15 Aligned_cols=127 Identities=21% Similarity=0.170 Sum_probs=78.7
Q ss_pred CCCcEEEEecCCHHHHHHHH------HcCCC--EEEeCcchhhhhccCCCC---ccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 90 NGEPITMVTAYDYPSAVHLD------SAGID--ICLVGDSAAMVVHGHDTT---LPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 90 ~g~~ItmlTAYD~~sA~iae------~AGiD--iILVGDSlgmv~lG~~dT---~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
+-++|.-+||.|.....+.+ ++|++ +++.||..... .++++ ....--|++...+... +.....-++
T Consensus 58 g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~--~~~~~~~~~~~~a~~Li~~i~~~~-~~~~~igva 134 (274)
T cd00537 58 GIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKGG--DQPGAKPVGFVYAVDLVELIRKEN-GGGFSIGVA 134 (274)
T ss_pred CCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHHhc-CCCCccccc
Confidence 35789999999998776654 78999 33569976432 12222 3344556666555442 233333346
Q ss_pred eCCCCCCcC-CHHHHHHHHHHHHHHhCCCEEEeCCCCC--chHHHHHHHHHcCCceeeccCCccc
Q 026125 159 DLPFGTYES-STNQAVDTAVRILKEGGMDAIKLEGGSP--SRITAARGIVEAGIAVMGHVGLTPQ 220 (243)
Q Consensus 159 DmPfgsY~~-s~e~Av~nA~Rl~keaGAdaVKLEGg~~--~~~~~i~~L~~~GIPV~GHiGLtPQ 220 (243)
--|.+..+. |.+.-++.-.+=+ ++||+-+-..=..+ .....++.+.++||.|-=+.|+.|=
T Consensus 135 ~yPe~hp~~~~~~~~~~~L~~Ki-~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~vPIi~GI~p~ 198 (274)
T cd00537 135 AYPEGHPEAPSLEEDIKRLKRKV-DAGADFIITQLFFDNDAFLRFVDRCRAAGITVPIIPGIMPL 198 (274)
T ss_pred cCCCcCCCCCCHHHHHHHHHHHH-HCCCCEEeecccccHHHHHHHHHHHHHcCCCCCEEeecccc
Confidence 666655443 3566666655555 58999887665532 2344566677889766667898885
No 176
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=88.29 E-value=4 Score=37.59 Aligned_cols=128 Identities=19% Similarity=0.245 Sum_probs=75.1
Q ss_pred HHHhhhCCCcEEE--EecCCH------HHHHHHHHcCCCEEEeCcchhh-hhccC----CC----CccCCHHHHHHHHHH
Q 026125 84 LRQKHKNGEPITM--VTAYDY------PSAVHLDSAGIDICLVGDSAAM-VVHGH----DT----TLPITLEEMLVHCRA 146 (243)
Q Consensus 84 Lr~~kk~g~~Itm--lTAYD~------~sA~iae~AGiDiILVGDSlgm-v~lG~----~d----T~~vTldeMi~h~~a 146 (243)
|+++++++++..+ +|+=|. ..+...+++|+|+|=+|-..+- +.-|- .+ -..+++++.+..++.
T Consensus 1 f~~lk~~~~~~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ 80 (259)
T PF00290_consen 1 FAELKKEGRKALIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKE 80 (259)
T ss_dssp HHHHHHTTBTEEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred ChhHHhCCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4556666666544 466443 2356677899999966533221 11110 00 134689999999999
Q ss_pred HH-cccCCCcEEeeCCCCCCcCCHH--HHHHHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHHcCCceeeccCC
Q 026125 147 VA-RGAKRPLLVGDLPFGTYESSTN--QAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVMGHVGL 217 (243)
Q Consensus 147 V~-Rga~~~fvVaDmPfgsY~~s~e--~Av~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~~GIPV~GHiGL 217 (243)
++ +..+.|+++ ++|- |+- ..++.=.+..+++|+|++-+-|=. ++...+.+.+.+.||..+-=+--
T Consensus 81 ir~~~~~~pivl-----m~Y~-N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p 149 (259)
T PF00290_consen 81 IRKKEPDIPIVL-----MTYY-NPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAP 149 (259)
T ss_dssp HHHHCTSSEEEE-----EE-H-HHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEET
T ss_pred HhccCCCCCEEE-----Eeec-cHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECC
Confidence 99 666666543 3563 432 234444666778999999999864 34456566677889987765544
No 177
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=88.27 E-value=4.4 Score=40.31 Aligned_cols=68 Identities=31% Similarity=0.407 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe-eCCCCCCcCCHHHHHHHHHH
Q 026125 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG-DLPFGTYESSTNQAVDTAVR 178 (243)
Q Consensus 100 YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa-DmPfgsY~~s~e~Av~nA~R 178 (243)
-+...+...-++|+|+|.+ |+. +|+ ...+.||+ +.|++..|+.+|++ |. .+.|++ ..
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~-D~a----~~~----~~~~~~~i---~~ik~~~p~~~v~agnv------~t~~~a----~~ 284 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVV-DTA----HGH----QEKMLEAL---RAVRALDPGVPIVAGNV------VTAEGT----RD 284 (479)
T ss_pred hHHHHHHHHHHhCCCEEEE-ecc----CCc----cHHHHHHH---HHHHHHCCCCeEEeecc------CCHHHH----HH
Confidence 3445566666789999876 332 444 33444444 56777777777776 64 355666 55
Q ss_pred HHHHhCCCEEEe
Q 026125 179 ILKEGGMDAIKL 190 (243)
Q Consensus 179 l~keaGAdaVKL 190 (243)
++ ++|||+||+
T Consensus 285 l~-~aGad~v~v 295 (479)
T PRK07807 285 LV-EAGADIVKV 295 (479)
T ss_pred HH-HcCCCEEEE
Confidence 66 599999994
No 178
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=88.16 E-value=5.8 Score=35.82 Aligned_cols=114 Identities=20% Similarity=0.182 Sum_probs=71.9
Q ss_pred HHHhhhCCCcEE--EEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC
Q 026125 84 LRQKHKNGEPIT--MVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (243)
Q Consensus 84 Lr~~kk~g~~It--mlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP 161 (243)
|+++.++|+++. .++-.+...+.++..+|+|.+.+= .+++. .+++++...+++... .+.. +++=.|
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~g~D~v~iD---------lEH~~-~~~~~~~~~~~a~~~-~g~~-~~VRv~ 70 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAGAGFDWLLID---------GEHAP-NDVRTILSQLQALAP-YPSS-PVVRPA 70 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHhcCCCEEEEe---------ccCCC-CCHHHHHHHHHHHHh-cCCC-cEEECC
Confidence 777778898864 356688889999999999988754 23332 488888887777743 2223 455666
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc-CCceeeccCCccc
Q 026125 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTPQ 220 (243)
Q Consensus 162 fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~GHiGLtPQ 220 (243)
..++ .. ..+.+ ++||++|-+---. ..++ ++.++++ --|=.|+=|+-|.
T Consensus 71 ~~~~----~~----i~~~L-d~Ga~gIivP~v~-s~e~-a~~~v~~~~y~P~G~Rg~~~~ 119 (249)
T TIGR02311 71 IGDP----VL----IKQLL-DIGAQTLLVPMIE-TAEQ-AEAAVAATRYPPMGIRGVGSA 119 (249)
T ss_pred CCCH----HH----HHHHh-CCCCCEEEecCcC-CHHH-HHHHHHHcCCCCCCcCCCCCc
Confidence 6433 32 35677 6999999775432 2233 3444432 2455666565543
No 179
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=88.14 E-value=13 Score=33.21 Aligned_cols=118 Identities=8% Similarity=0.029 Sum_probs=67.4
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhh----hccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCc
Q 026125 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMV----VHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYE 166 (243)
Q Consensus 91 g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv----~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~ 166 (243)
+.++.++.-.+.--...+.++|+|.|-+..+.+-. .+| .+..-.++.+...++..+. ... .+....|+.+.
T Consensus 61 ~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~--~~~~~~~~~~~~~i~~a~~-~G~-~v~~~~~~~~~- 135 (259)
T cd07939 61 PARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDIHLAHKLG--KDRAWVLDQLRRLVGRAKD-RGL-FVSVGAEDASR- 135 (259)
T ss_pred CCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhC--CCHHHHHHHHHHHHHHHHH-CCC-eEEEeeccCCC-
Confidence 45566665455556667788999998655444332 222 2222223333333333332 122 34577788555
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 167 ~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
.+++..++.+.++. +.|++.|.|-|... ....+++.+.+. ++|+--|
T Consensus 136 ~~~~~~~~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H 188 (259)
T cd07939 136 ADPDFLIEFAEVAQ-EAGADRLRFADTVGILDPFTTYELIRRLRAATDLPLEFH 188 (259)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 58888888887776 68999999998632 233445555543 3554333
No 180
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=87.93 E-value=4.2 Score=36.28 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE-eeCCCCCCcCCHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 103 ~sA~iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV-aDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
-.|+.+++.|.-.|- -| ..+.++|+..++.|.+- .--.|..++.-..-.++.+..++
T Consensus 3 ~mA~Aa~~gGA~giR~~~---------------------~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~ 61 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIRANG---------------------VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALA 61 (192)
T ss_dssp HHHHHHHHCT-SEEEEES---------------------HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHH
T ss_pred HHHHHHHHCCceEEEcCC---------------------HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHH
Confidence 468899999999885 44 67789999999888443 12223333333334556667778
Q ss_pred HHhCCCEEEeCCCCCc----hHHHHHHHHHcCCceeeccC
Q 026125 181 KEGGMDAIKLEGGSPS----RITAARGIVEAGIAVMGHVG 216 (243)
Q Consensus 181 keaGAdaVKLEGg~~~----~~~~i~~L~~~GIPV~GHiG 216 (243)
++|||.|-|.+-... ..++++.+-+.+.++|+-+.
T Consensus 62 -~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADis 100 (192)
T PF04131_consen 62 -EAGADIIALDATDRPRPETLEELIREIKEKYQLVMADIS 100 (192)
T ss_dssp -HCT-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-S
T ss_pred -HcCCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecC
Confidence 599999999776433 56788999999999998763
No 181
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=87.86 E-value=4.9 Score=35.08 Aligned_cols=110 Identities=20% Similarity=0.242 Sum_probs=71.1
Q ss_pred HHHhhhCCCcEEEE--ecCC--------HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC
Q 026125 84 LRQKHKNGEPITMV--TAYD--------YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR 153 (243)
Q Consensus 84 Lr~~kk~g~~Itml--TAYD--------~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~ 153 (243)
++..++.|-.+..- +++. ...++.+.++|+|.|.+-|+.|. .+-+++....+.+++..+.
T Consensus 121 i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~----------~~P~~v~~li~~l~~~~~~ 190 (265)
T cd03174 121 IEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGL----------ATPEEVAELVKALREALPD 190 (265)
T ss_pred HHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCC----------cCHHHHHHHHHHHHHhCCC
Confidence 34445556444332 4566 56788889999999999988643 5667777777778777764
Q ss_pred CcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC-------CCCchHHHHHHHHHcCC
Q 026125 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG-------GSPSRITAARGIVEAGI 209 (243)
Q Consensus 154 ~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEG-------g~~~~~~~i~~L~~~GI 209 (243)
. -+.|- .+.+..-++.|+...+ ++||+.|-.-= |.--.+.++..|.+.|+
T Consensus 191 ~----~~~~H-~Hn~~gla~an~laA~-~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~~~~~ 247 (265)
T cd03174 191 V----PLGLH-THNTLGLAVANSLAAL-EAGADRVDGSVNGLGERAGNAATEDLVAALEGLGI 247 (265)
T ss_pred C----eEEEE-eCCCCChHHHHHHHHH-HcCCCEEEeccccccccccCccHHHHHHHHHhcCC
Confidence 1 22232 3467788999999999 58998875421 11124455666666653
No 182
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=87.85 E-value=7 Score=34.08 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=46.5
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
++++.++|.|.|-++.. . .+ ...+.+++..+.|+++..=+ +- .|++++++|+.+++ +.|
T Consensus 149 ~~~a~~~GaD~Ik~~~~---------~----~~----~~~~~i~~~~~~pvv~~GG~--~~-~~~~~~l~~~~~~~-~~G 207 (235)
T cd00958 149 ARIGAELGADIVKTKYT---------G----DA----ESFKEVVEGCPVPVVIAGGP--KK-DSEEEFLKMVYDAM-EAG 207 (235)
T ss_pred HHHHHHHCCCEEEecCC---------C----CH----HHHHHHHhcCCCCEEEeCCC--CC-CCHHHHHHHHHHHH-HcC
Confidence 77788999999988521 1 23 33456777888886654211 22 38899999999998 599
Q ss_pred CCEEEeC
Q 026125 185 MDAIKLE 191 (243)
Q Consensus 185 AdaVKLE 191 (243)
|++|-+=
T Consensus 208 a~gv~vg 214 (235)
T cd00958 208 AAGVAVG 214 (235)
T ss_pred CcEEEec
Confidence 9999663
No 183
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=87.80 E-value=19 Score=33.64 Aligned_cols=118 Identities=13% Similarity=0.131 Sum_probs=83.9
Q ss_pred HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
|+..++++--+-..++||+.+++ .||+.+.++|+ +.-+. ..| ..++.+...++.+++.++-| |..
T Consensus 8 l~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~----~~~-----~~~~~~~~~~~~~a~~~~VP-Val 77 (282)
T TIGR01858 8 LQDAQAGGYAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGT----FKH-----AGTEYIVALCSAASTTYNMP-LAL 77 (282)
T ss_pred HHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccH----Hhh-----CCHHHHHHHHHHHHHHCCCC-EEE
Confidence 45567788889999999999986 57888999997 33221 222 24677788888888888777 677
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCcc
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTP 219 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtP 219 (243)
-|..+. +.|.. .+.+ ++|...|.+.|+..- +..+++..-..||+|=|=||-++
T Consensus 78 HLDHg~---~~e~i----~~ai-~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vg 137 (282)
T TIGR01858 78 HLDHHE---SLDDI----RQKV-HAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLG 137 (282)
T ss_pred ECCCCC---CHHHH----HHHH-HcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecC
Confidence 887732 44444 5666 489999999888432 23445556678999977776665
No 184
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.79 E-value=7.3 Score=34.70 Aligned_cols=93 Identities=13% Similarity=0.147 Sum_probs=58.5
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
.+..|++.+ .+-.|-.=|.-|...|+.+-++|.|.+.+-. .-+|++..|+. .+
T Consensus 56 ~I~~l~~~~-p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~---------------~~~~vi~~a~~-----------~~ 108 (212)
T PRK05718 56 AIRLIAKEV-PEALIGAGTVLNPEQLAQAIEAGAQFIVSPG---------------LTPPLLKAAQE-----------GP 108 (212)
T ss_pred HHHHHHHHC-CCCEEEEeeccCHHHHHHHHHcCCCEEECCC---------------CCHHHHHHHHH-----------cC
Confidence 355555543 2334455588999999999999999998752 22356665554 44
Q ss_pred CCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-hHHHHHHHH
Q 026125 160 LPFG-TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-RITAARGIV 205 (243)
Q Consensus 160 mPfg-sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-~~~~i~~L~ 205 (243)
+|+. +- .|+.|+ .+.+ +.|++.||+=..... -+..++.|.
T Consensus 109 i~~iPG~-~TptEi----~~a~-~~Ga~~vKlFPa~~~gg~~~lk~l~ 150 (212)
T PRK05718 109 IPLIPGV-STPSEL----MLGM-ELGLRTFKFFPAEASGGVKMLKALA 150 (212)
T ss_pred CCEeCCC-CCHHHH----HHHH-HCCCCEEEEccchhccCHHHHHHHh
Confidence 5554 44 478885 3445 589999999654321 134456665
No 185
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=87.77 E-value=6.3 Score=35.96 Aligned_cols=79 Identities=22% Similarity=0.231 Sum_probs=46.3
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCc--cCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTL--PITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~--~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
.++.++++|+|.|-+....... ...... ...-...+..++.|++..+.|+ ++. |++ .+++++ .++++
T Consensus 233 la~~l~~~G~d~i~vs~g~~~~--~~~~~~~~~~~~~~~~~~~~~ir~~~~iPV-i~~---Ggi-~t~~~a----~~~l~ 301 (327)
T cd02803 233 IAKALEEAGVDALHVSGGSYES--PPPIIPPPYVPEGYFLELAEKIKKAVKIPV-IAV---GGI-RDPEVA----EEILA 301 (327)
T ss_pred HHHHHHHcCCCEEEeCCCCCcc--cccccCCCCCCcchhHHHHHHHHHHCCCCE-EEe---CCC-CCHHHH----HHHHH
Confidence 3778899999999654322110 000000 0111223556677888777774 444 456 367776 56787
Q ss_pred HhCCCEEEeCCC
Q 026125 182 EGGMDAIKLEGG 193 (243)
Q Consensus 182 eaGAdaVKLEGg 193 (243)
++|||.|-+--+
T Consensus 302 ~g~aD~V~igR~ 313 (327)
T cd02803 302 EGKADLVALGRA 313 (327)
T ss_pred CCCCCeeeecHH
Confidence 678999988433
No 186
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=87.77 E-value=13 Score=33.45 Aligned_cols=101 Identities=19% Similarity=0.300 Sum_probs=66.2
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHc-ccCCCcEE
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR-GAKRPLLV 157 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R-ga~~~fvV 157 (243)
+.-++.+.++|-++.+-.+|+...|.++.++|+|.|. +| .+- -.|.+ .++.+....+.++. +.+..++.
T Consensus 93 l~Ai~~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvg-R~~--~~g~d-----g~~~i~~~~~~~~~~~~~tkILa 164 (220)
T PRK12655 93 LAAIKKLKKEGIPTLGTAVYSAAQGLLAALAGAKYVAPYVN-RVD--AQGGD-----GIRMVQELQTLLEMHAPESMVLA 164 (220)
T ss_pred HHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCeEEEeecc-hHh--HcCCC-----HHHHHHHHHHHHHhcCCCcEEEE
Confidence 6677788889999999999999999999999999884 66 221 22332 23333333333332 34444333
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE 206 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~ 206 (243)
+ |+ .|+++.++ .+ .+|||.+-+- +++++.|.+
T Consensus 165 A-----S~-r~~~~v~~----~~-~~G~d~vTip------~~vl~~l~~ 196 (220)
T PRK12655 165 A-----SF-KTPRQALD----CL-LAGCQSITLP------LDVAQQMLN 196 (220)
T ss_pred E-----ec-CCHHHHHH----HH-HcCCCEEECC------HHHHHHHHc
Confidence 4 67 58888854 44 3899999885 445566644
No 187
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=87.74 E-value=1.5 Score=42.19 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=59.7
Q ss_pred HHHHHHHHcCCCEE---EeCc--chhhhhccCCCC---ccCCHHHHHHHHHHHHccc---CCCcEEeeCCCCCCcCCHHH
Q 026125 103 PSAVHLDSAGIDIC---LVGD--SAAMVVHGHDTT---LPITLEEMLVHCRAVARGA---KRPLLVGDLPFGTYESSTNQ 171 (243)
Q Consensus 103 ~sA~iae~AGiDiI---LVGD--Slgmv~lG~~dT---~~vTldeMi~h~~aV~Rga---~~~fvVaDmPfgsY~~s~e~ 171 (243)
.-|+++.+.|.|+| +.|| ++..+-+|..+. ...+.+.....++-|.+++ +.|+|++.=|= .+.++
T Consensus 221 ~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k----~~~~e 296 (348)
T PRK09250 221 QANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGAS----KGEDD 296 (348)
T ss_pred HHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCC----CCHHH
Confidence 35899999999999 4665 444454555443 3455566677778888887 88988877554 36678
Q ss_pred HHHHHHHH---HHHhCCCEEEe
Q 026125 172 AVDTAVRI---LKEGGMDAIKL 190 (243)
Q Consensus 172 Av~nA~Rl---~keaGAdaVKL 190 (243)
.++.+... + ++||.+|-+
T Consensus 297 ~L~~v~~a~~~i-~aGa~Gv~i 317 (348)
T PRK09250 297 LLDAVRTAVINK-RAGGMGLII 317 (348)
T ss_pred HHHHHHHHHHhh-hcCCcchhh
Confidence 88888777 7 489999866
No 188
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=87.72 E-value=7.9 Score=35.60 Aligned_cols=83 Identities=23% Similarity=0.229 Sum_probs=52.1
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
.+..+|+.. ++++.-+.+++...|..+.++|+|.|.+| ++..+++-...+.+++..++..+++
T Consensus 173 av~~~R~~~--~~~~IgVev~t~eea~~A~~~gaD~I~ld--------------~~~p~~l~~~~~~~~~~~~~i~i~A- 235 (272)
T cd01573 173 ALARLRATA--PEKKIVVEVDSLEEALAAAEAGADILQLD--------------KFSPEELAELVPKLRSLAPPVLLAA- 235 (272)
T ss_pred HHHHHHHhC--CCCeEEEEcCCHHHHHHHHHcCCCEEEEC--------------CCCHHHHHHHHHHHhccCCCceEEE-
Confidence 345555543 34567999999999999999999999998 2333455444555544322222222
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEE
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAI 188 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaV 188 (243)
-|+ .++++. ..+. +.|||+|
T Consensus 236 --sGG--I~~~ni----~~~~-~~Gvd~I 255 (272)
T cd01573 236 --AGG--INIENA----AAYA-AAGADIL 255 (272)
T ss_pred --ECC--CCHHHH----HHHH-HcCCcEE
Confidence 122 355444 6666 5899999
No 189
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=87.71 E-value=19 Score=34.69 Aligned_cols=131 Identities=11% Similarity=0.075 Sum_probs=88.6
Q ss_pred HHHHhhhCCCcEEEEecCCHHHH----HHHHHcCCCEEE-eCcchhhhhccC------CCCc-cCCHHHHHHHHHHHHcc
Q 026125 83 HLRQKHKNGEPITMVTAYDYPSA----VHLDSAGIDICL-VGDSAAMVVHGH------DTTL-PITLEEMLVHCRAVARG 150 (243)
Q Consensus 83 ~Lr~~kk~g~~ItmlTAYD~~sA----~iae~AGiDiIL-VGDSlgmv~lG~------~dT~-~vTldeMi~h~~aV~Rg 150 (243)
-|+..++++--+-..++|+..++ ..||+.+.++|+ +..+-..-..|- ++.. -..++.+...++..++.
T Consensus 4 ll~~A~~~~yAV~AfN~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 83 (340)
T cd00453 4 VFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEH 83 (340)
T ss_pred HHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHH
Confidence 36667788889999999999998 457888999987 332122222331 1111 11266778888888888
Q ss_pred cCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC-----------CCEEEeCCCCCc-------hHHHHHHHHHcCCcee
Q 026125 151 AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG-----------MDAIKLEGGSPS-------RITAARGIVEAGIAVM 212 (243)
Q Consensus 151 a~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG-----------AdaVKLEGg~~~-------~~~~i~~L~~~GIPV~ 212 (243)
++-| |+.-|..+. ..+.+.. .+.+ ++| .+.|.+.|+... +..+++..-..||.|=
T Consensus 84 ~~VP-V~lHLDH~~-~~~~e~i----~~ai-~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VE 156 (340)
T cd00453 84 YGVP-VILHTDHCA-KKLLPWI----DGLL-DAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLE 156 (340)
T ss_pred CCCC-EEEEcCCCC-CCCHHHH----HHHH-HcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 8777 778888854 2244443 5667 589 999999888532 2344555667899998
Q ss_pred eccCCccc
Q 026125 213 GHVGLTPQ 220 (243)
Q Consensus 213 GHiGLtPQ 220 (243)
|=||-+.-
T Consensus 157 aElG~igG 164 (340)
T cd00453 157 IELGCTGG 164 (340)
T ss_pred EEEEecCC
Confidence 77777653
No 190
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=87.62 E-value=8 Score=30.96 Aligned_cols=102 Identities=22% Similarity=0.234 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
...++.+.+.|+|++-++...... .+. ..... ...+.+++..+.+ +++++-... ..+.+.-+.+.++
T Consensus 15 ~~~~~~~~~~G~~~v~~~~~~~~~-~~~---~~~~~----~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~a~~~~ 81 (200)
T cd04722 15 VELAKAAAEAGADAIIVGTRSSDP-EEA---ETDDK----EVLKEVAAETDLP-LGVQLAIND----AAAAVDIAAAAAR 81 (200)
T ss_pred HHHHHHHHcCCCCEEEEeeEEECc-ccC---CCccc----cHHHHHHhhcCCc-EEEEEccCC----chhhhhHHHHHHH
Confidence 345666778899999887533221 000 00100 1233455555566 455543322 2233222235566
Q ss_pred HhCCCEEEeCCCCCc----hHHHHHHHHHc--CCceeeccC
Q 026125 182 EGGMDAIKLEGGSPS----RITAARGIVEA--GIAVMGHVG 216 (243)
Q Consensus 182 eaGAdaVKLEGg~~~----~~~~i~~L~~~--GIPV~GHiG 216 (243)
++|+|+|.+-++... ...+++.+.+. ++||.-=+.
T Consensus 82 ~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~ 122 (200)
T cd04722 82 AAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLS 122 (200)
T ss_pred HcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 899999999877632 45567778877 888776543
No 191
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=87.56 E-value=8.2 Score=36.47 Aligned_cols=108 Identities=12% Similarity=0.024 Sum_probs=66.3
Q ss_pred CCcEEEEec---CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcC
Q 026125 91 GEPITMVTA---YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYES 167 (243)
Q Consensus 91 g~~ItmlTA---YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~ 167 (243)
+.+++++.. ++....+.+.++|+|.|-+.+...- .+....|++.+++- .. .+.+.+-. ++..
T Consensus 76 ~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e------------~d~~~~~i~~ak~~-G~-~v~~~l~~-s~~~ 140 (333)
T TIGR03217 76 RAKVAVLLLPGIGTVHDLKAAYDAGARTVRVATHCTE------------ADVSEQHIGMAREL-GM-DTVGFLMM-SHMT 140 (333)
T ss_pred CCEEEEEeccCccCHHHHHHHHHCCCCEEEEEeccch------------HHHHHHHHHHHHHc-CC-eEEEEEEc-ccCC
Confidence 356664432 4677788889999999987754311 23456666666542 11 23333333 4445
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc---CCceeec
Q 026125 168 STNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA---GIAVMGH 214 (243)
Q Consensus 168 s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~---GIPV~GH 214 (243)
+++..++.+.++ .+.||+.|.|-|... .....+++|.++ .||+-=|
T Consensus 141 ~~e~l~~~a~~~-~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 194 (333)
T TIGR03217 141 PPEKLAEQAKLM-ESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFH 194 (333)
T ss_pred CHHHHHHHHHHH-HhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEE
Confidence 788777777654 579999999999832 234456666554 3666544
No 192
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=87.47 E-value=6.2 Score=40.96 Aligned_cols=128 Identities=21% Similarity=0.194 Sum_probs=72.1
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe--C---------cchhhhh-ccCCCCccCCHHHHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV--G---------DSAAMVV-HGHDTTLPITLEEMLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV--G---------DSlgmv~-lG~~dT~~vTldeMi~h~ 144 (243)
+.+|..++.+..+. | .-.|+.+.+||+|.|=+ | ..+.+.- -.|-....--+.-.++..
T Consensus 539 ~~mt~~eI~~~i~~---------f-~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv 608 (765)
T PRK08255 539 REMTRADMDRVRDD---------F-VAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVF 608 (765)
T ss_pred CcCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHH
Confidence 56888888887542 1 24677889999999943 3 1121110 011111111233456677
Q ss_pred HHHHcccCCCcEE------eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-----------hHHHHHHHHH-
Q 026125 145 RAVARGAKRPLLV------GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-----------RITAARGIVE- 206 (243)
Q Consensus 145 ~aV~Rga~~~fvV------aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-----------~~~~i~~L~~- 206 (243)
++|+...+.-|.| .|.--++ .+.+++++-|..+. +.|+|.|.+.+|... .....+.+.+
T Consensus 609 ~~ir~~~~~~~~v~~ri~~~~~~~~g--~~~~~~~~~~~~l~-~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~ 685 (765)
T PRK08255 609 RAVRAVWPAEKPMSVRISAHDWVEGG--NTPDDAVEIARAFK-AAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNE 685 (765)
T ss_pred HHHHHhcCCCCeeEEEEccccccCCC--CCHHHHHHHHHHHH-hcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHH
Confidence 7888876543322 1322223 36889988887665 689999999865311 1122233333
Q ss_pred cCCceeeccCC
Q 026125 207 AGIAVMGHVGL 217 (243)
Q Consensus 207 ~GIPV~GHiGL 217 (243)
-+|||++-=++
T Consensus 686 ~~~pv~~~G~i 696 (765)
T PRK08255 686 AGIATIAVGAI 696 (765)
T ss_pred cCCEEEEeCCC
Confidence 27999886444
No 193
>PLN02591 tryptophan synthase
Probab=87.45 E-value=8.7 Score=35.08 Aligned_cols=105 Identities=17% Similarity=0.224 Sum_probs=67.5
Q ss_pred HHHHHHcCCCEEEeCcchhh---------hhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCH--HHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAM---------VVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST--NQAV 173 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgm---------v~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~--e~Av 173 (243)
++..+++|+|+|=+|-..+- -..-..-...+|+++.+..++.+++-.+.|++ +++| .|+ ...+
T Consensus 22 ~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~i-----lm~Y-~N~i~~~G~ 95 (250)
T PLN02591 22 LRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIV-----LFTY-YNPILKRGI 95 (250)
T ss_pred HHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEE-----EEec-ccHHHHhHH
Confidence 45567789999855532211 00000112346888889999999876666643 4466 344 2356
Q ss_pred HHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHHcCCceeecc
Q 026125 174 DTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVMGHV 215 (243)
Q Consensus 174 ~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~~GIPV~GHi 215 (243)
++-.+.++++|+|+|-+-|=. ++...+++++-+.||..+==+
T Consensus 96 ~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 96 DKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 666777789999999998864 335566778888898776544
No 194
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=87.43 E-value=18 Score=33.99 Aligned_cols=83 Identities=18% Similarity=0.062 Sum_probs=50.5
Q ss_pred HHHHHHHHcC--CCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-----CCcEEeeCCCCCCcCCHHHHHHH
Q 026125 103 PSAVHLDSAG--IDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-----RPLLVGDLPFGTYESSTNQAVDT 175 (243)
Q Consensus 103 ~sA~iae~AG--iDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-----~~fvVaDmPfgsY~~s~e~Av~n 175 (243)
-.+..+++++ +|+|-+--|--++- |..+ .-.-+.+.+.+++|++.++ .| |.+=|+. . .+.++..+.
T Consensus 158 d~~~~~~~~~~~ad~lelN~scP~~~-g~~~--~~~~~~~~eiv~aVr~~~~~~~~~~P-V~vKlsp-~--~~~~~~~~i 230 (344)
T PRK05286 158 DYLICLEKLYPYADYFTVNISSPNTP-GLRD--LQYGEALDELLAALKEAQAELHGYVP-LLVKIAP-D--LSDEELDDI 230 (344)
T ss_pred HHHHHHHHHHhhCCEEEEEccCCCCC-Cccc--ccCHHHHHHHHHHHHHHHhccccCCc-eEEEeCC-C--CCHHHHHHH
Confidence 4566777777 99987654443332 2211 2233445566778888776 56 5555553 2 345566555
Q ss_pred HHHHHHHhCCCEEEeCCC
Q 026125 176 AVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 176 A~Rl~keaGAdaVKLEGg 193 (243)
|.. ++++|||+|.+-++
T Consensus 231 a~~-l~~~Gadgi~~~nt 247 (344)
T PRK05286 231 ADL-ALEHGIDGVIATNT 247 (344)
T ss_pred HHH-HHHhCCcEEEEeCC
Confidence 554 45799999999875
No 195
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=87.42 E-value=8.3 Score=35.37 Aligned_cols=83 Identities=18% Similarity=0.132 Sum_probs=56.1
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
.+..+|+.. ..+++.-+.+.+...|..+.++|+|.|+.| +++.+++-..++.+... .| +++
T Consensus 167 av~~~r~~~-~~~~~Igvev~t~eea~~A~~~gaDyI~ld--------------~~~~e~lk~~v~~~~~~--ip-i~A- 227 (265)
T TIGR00078 167 AVKRARAAA-PFALKIEVEVESLEEAEEAAEAGADIIMLD--------------NMKPEEIKEAVQLLKGR--VL-LEA- 227 (265)
T ss_pred HHHHHHHhC-CCCCeEEEEeCCHHHHHHHHHcCCCEEEEC--------------CCCHHHHHHHHHHhcCC--Cc-EEE-
Confidence 355566643 335778999999999999999999999886 45667766655544221 33 333
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
-|+ .+++++ ..+. ++|||+|-+
T Consensus 228 --sGG--I~~~ni----~~~a-~~Gvd~Isv 249 (265)
T TIGR00078 228 --SGG--ITLDNL----EEYA-ETGVDVISS 249 (265)
T ss_pred --ECC--CCHHHH----HHHH-HcCCCEEEe
Confidence 123 355555 5566 699999988
No 196
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=87.42 E-value=11 Score=33.71 Aligned_cols=116 Identities=14% Similarity=0.087 Sum_probs=66.5
Q ss_pred HHHHHHhhhCCCcEEEEe---cCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHc-ccCCCcE
Q 026125 81 LTHLRQKHKNGEPITMVT---AYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR-GAKRPLL 156 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlT---AYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R-ga~~~fv 156 (243)
+..+++.. .+.+++++. ..+.-.-..+.++|+|.+-+.++..-. +.+...++.+++ |....+-
T Consensus 65 i~~~~~~~-~~~~~~~~~~~~~~~~~~i~~a~~~g~~~iri~~~~s~~------------~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 65 LEAAAEAL-KQAKLGVLLLPGIGTVDDLKMAADLGVDVVRVATHCTEA------------DVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred HHHHHHhc-cCCEEEEEecCCccCHHHHHHHHHcCCCEEEEEechhhH------------HHHHHHHHHHHHCCCeEEEE
Confidence 34444332 457887774 334555667778899999777666422 234444444433 3322222
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-C-Cceeec
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-G-IAVMGH 214 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-G-IPV~GH 214 (243)
+.| ++..+++..++.+.++. +.|+|.|.|-|... ....+++.+.++ + ||+--|
T Consensus 132 ~~~----~~~~~~~~~~~~~~~~~-~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H 191 (263)
T cd07943 132 LMM----SHMASPEELAEQAKLME-SYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFH 191 (263)
T ss_pred EEe----ccCCCHHHHHHHHHHHH-HcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEE
Confidence 233 34457888777776655 79999999998732 233445555443 3 355555
No 197
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=87.41 E-value=7.7 Score=35.41 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=69.6
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHH--HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPS--AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~s--A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
|.+.|++..+++. ||..- |+-..++|.|+|=||-.. +..-..+.|....+.|+...+.| |.
T Consensus 11 ~~~~~~~~~~~~d-------~~~i~~~A~~~~~~GAdiIDVg~~~---------~~~eE~~r~~~~v~~l~~~~~~p-ls 73 (261)
T PRK07535 11 TRKSIAEAIEAKD-------AAFIQKLALKQAEAGADYLDVNAGT---------AVEEEPETMEWLVETVQEVVDVP-LC 73 (261)
T ss_pred hhHHHHHHHHcCC-------HHHHHHHHHHHHHCCCCEEEECCCC---------CchhHHHHHHHHHHHHHHhCCCC-EE
Confidence 4566777666553 23333 334457899999887431 22334666777888887666655 57
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC-CCchHHHHHHHHHcCCceee-cc---CCcccc
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG-SPSRITAARGIVEAGIAVMG-HV---GLTPQA 221 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg-~~~~~~~i~~L~~~GIPV~G-Hi---GLtPQ~ 221 (243)
.|. |. .++++.|.+.++ |++.|+==.+ .+..+.+++.+.+.|.||+. |. | +|++
T Consensus 74 IDT----~~---~~v~eaaL~~~~--G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g-~P~t 132 (261)
T PRK07535 74 IDS----PN---PAAIEAGLKVAK--GPPLINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTG-IPKD 132 (261)
T ss_pred EeC----CC---HHHHHHHHHhCC--CCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCC-CCCC
Confidence 773 42 445555555553 8888874333 22234556667788999996 54 4 5654
No 198
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=87.38 E-value=2.4 Score=39.57 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCCEEEeC-cchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVG-DSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 103 ~sA~iae~AGiDiILVG-DSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
..|+.++++|+|.|.+- -.-....-| +..+ ...+.|++.++.| |++. |+- .|++++ .++++
T Consensus 153 ~~a~~le~~G~d~i~vh~rt~~~~~~G-----~a~~----~~i~~ik~~~~iP-VI~n---GgI-~s~~da----~~~l~ 214 (321)
T PRK10415 153 EIAQLAEDCGIQALTIHGRTRACLFNG-----EAEY----DSIRAVKQKVSIP-VIAN---GDI-TDPLKA----RAVLD 214 (321)
T ss_pred HHHHHHHHhCCCEEEEecCccccccCC-----CcCh----HHHHHHHHhcCCc-EEEe---CCC-CCHHHH----HHHHh
Confidence 46788999999988543 221111222 2233 3456777777777 4543 233 367777 56777
Q ss_pred HhCCCEEEeCCC
Q 026125 182 EGGMDAIKLEGG 193 (243)
Q Consensus 182 eaGAdaVKLEGg 193 (243)
++|||+|.+--|
T Consensus 215 ~~gadgVmiGR~ 226 (321)
T PRK10415 215 YTGADALMIGRA 226 (321)
T ss_pred ccCCCEEEEChH
Confidence 789999999633
No 199
>PRK06801 hypothetical protein; Provisional
Probab=87.23 E-value=10 Score=35.36 Aligned_cols=111 Identities=15% Similarity=0.253 Sum_probs=71.0
Q ss_pred hCCCcEEEE--ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC---CC------cEE
Q 026125 89 KNGEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK---RP------LLV 157 (243)
Q Consensus 89 k~g~~Itml--TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~---~~------fvV 157 (243)
+..-|+++= -+.|......|=++|++.+.+-.| ..+++|-+..++.|++-+. -+ .|-
T Consensus 72 ~~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S------------~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vg 139 (286)
T PRK06801 72 RHDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGS------------TLEYEENVRQTREVVKMCHAVGVSVEAELGAVG 139 (286)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCC------------CCCHHHHHHHHHHHHHHHHHcCCeEEeecCccc
Confidence 344564443 467888888888999998877433 3478999999998865331 11 110
Q ss_pred -eeCC----C-C--CCcCCHHHHHHHHHHHHHHhCCCEEEeCC--------C-CCchHHHHHHHHHc-CCceeeccC
Q 026125 158 -GDLP----F-G--TYESSTNQAVDTAVRILKEGGMDAIKLEG--------G-SPSRITAARGIVEA-GIAVMGHVG 216 (243)
Q Consensus 158 -aDmP----f-g--sY~~s~e~Av~nA~Rl~keaGAdaVKLEG--------g-~~~~~~~i~~L~~~-GIPV~GHiG 216 (243)
.|.+ . + .| .+++++ .+++++.|+|.+.+-= + .....+.++.+.+. +||++-|=|
T Consensus 140 g~e~~v~~~~~~~~~~-T~pe~a----~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGG 211 (286)
T PRK06801 140 GDEGGALYGEADSAKF-TDPQLA----RDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGG 211 (286)
T ss_pred CCCCCcccCCcccccC-CCHHHH----HHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECC
Confidence 1111 0 1 25 578888 6788889999998811 1 12334456666654 699999966
No 200
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=87.13 E-value=8.5 Score=34.62 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=61.0
Q ss_pred HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 026125 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (243)
Q Consensus 107 iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGA 185 (243)
..-++|+|-+++..|.|=. -..|.||-..-.+.+++.+. +..|++-.. ..|.+++++.|... ++.||
T Consensus 29 ~l~~~Gv~gl~v~GstGE~-------~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~----~~~~~~~~~~a~~a-~~~G~ 96 (284)
T cd00950 29 FQIENGTDGLVVCGTTGES-------PTLSDEEHEAVIEAVVEAVNGRVPVIAGTG----SNNTAEAIELTKRA-EKAGA 96 (284)
T ss_pred HHHHcCCCEEEECCCCcch-------hhCCHHHHHHHHHHHHHHhCCCCcEEeccC----CccHHHHHHHHHHH-HHcCC
Confidence 3446899999877665432 35788997777776666554 233444432 24778999988655 57999
Q ss_pred CEEEeCCCC------CchHHHHHHHHH-cCCcee
Q 026125 186 DAIKLEGGS------PSRITAARGIVE-AGIAVM 212 (243)
Q Consensus 186 daVKLEGg~------~~~~~~i~~L~~-~GIPV~ 212 (243)
|+|-+---. +......+.+.+ .++||+
T Consensus 97 d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~ 130 (284)
T cd00950 97 DAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVI 130 (284)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 999886331 123344556666 478888
No 201
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=86.93 E-value=5.5 Score=35.70 Aligned_cols=99 Identities=22% Similarity=0.154 Sum_probs=57.9
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHc---ccCCCcEE-eeCCCC---CCcCCHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR---GAKRPLLV-GDLPFG---TYESSTNQAVDTAV 177 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R---ga~~~fvV-aDmPfg---sY~~s~e~Av~nA~ 177 (243)
+..+-+.|+|.+-+-+..+. + +-.|++..+++|++ ..+.||++ .. +.| ++ .++ +.+..+.
T Consensus 96 v~~al~~Ga~~v~~~~~~g~------~----~~~~~~~~~~~i~~~~~~~g~~liv~~~-~~Gvh~~~-~~~-~~~~~~~ 162 (258)
T TIGR01949 96 VEDAIRMGADAVSIHVNVGS------D----TEWEQIRDLGMIAEICDDWGVPLLAMMY-PRGPHIDD-RDP-ELVAHAA 162 (258)
T ss_pred HHHHHHCCCCEEEEEEecCC------c----hHHHHHHHHHHHHHHHHHcCCCEEEEEe-ccCccccc-ccH-HHHHHHH
Confidence 55566889998866655431 1 22344555555554 34567666 22 221 22 233 3444544
Q ss_pred HHHHHhCCCEEEeCCCCCchHHHHHHHHH-cCCceeeccCCc
Q 026125 178 RILKEGGMDAIKLEGGSPSRITAARGIVE-AGIAVMGHVGLT 218 (243)
Q Consensus 178 Rl~keaGAdaVKLEGg~~~~~~~i~~L~~-~GIPV~GHiGLt 218 (243)
+...+.|||-||+.... -...++.+++ ..+||..==|.+
T Consensus 163 ~~a~~~GADyikt~~~~--~~~~l~~~~~~~~iPVva~GGi~ 202 (258)
T TIGR01949 163 RLGAELGADIVKTPYTG--DIDSFRDVVKGCPAPVVVAGGPK 202 (258)
T ss_pred HHHHHHCCCEEeccCCC--CHHHHHHHHHhCCCcEEEecCCC
Confidence 56667999999997553 2345677876 579998744455
No 202
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=86.83 E-value=13 Score=32.84 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=64.4
Q ss_pred EEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHH
Q 026125 94 ITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAV 173 (243)
Q Consensus 94 ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av 173 (243)
|-+.+-.+...|..+.++|+|++-+ .+--.+--.|+.++.-.-++.+.... . .|+= | ...++++.
T Consensus 5 vKICGi~~~eda~~~~~~Gad~iGf-------I~~~~S~R~V~~~~a~~i~~~~~~~i--~-~VgV--f--~~~~~~~i- 69 (210)
T PRK01222 5 VKICGITTPEDAEAAAELGADAIGF-------VFYPKSPRYVSPEQAAELAAALPPFV--K-VVGV--F--VNASDEEI- 69 (210)
T ss_pred EEECCCCcHHHHHHHHHcCCCEEEE-------ccCCCCCCcCCHHHHHHHHHhCCCCC--C-EEEE--E--eCCCHHHH-
Confidence 5566778889999999999999843 12233556788887554444332111 1 1210 1 12355665
Q ss_pred HHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc-CCceeeccCC
Q 026125 174 DTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGL 217 (243)
Q Consensus 174 ~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~GHiGL 217 (243)
.+++++.+-|.|+|.|... ...++.|.+. +++|+==+..
T Consensus 70 ---~~~~~~~~~d~vQLHg~e~--~~~~~~l~~~~~~~iik~i~v 109 (210)
T PRK01222 70 ---DEIVETVPLDLLQLHGDET--PEFCRQLKRRYGLPVIKALRV 109 (210)
T ss_pred ---HHHHHhcCCCEEEECCCCC--HHHHHHHHhhcCCcEEEEEec
Confidence 5677889999999998753 4446777763 5776544433
No 203
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=86.81 E-value=5.9 Score=40.41 Aligned_cols=117 Identities=21% Similarity=0.259 Sum_probs=72.7
Q ss_pred HHHHHHhhhCCCcEEEEec------CC-------HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHH
Q 026125 81 LTHLRQKHKNGEPITMVTA------YD-------YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTA------YD-------~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV 147 (243)
+..|++.. .+.++.|+.= |. -.+...+.++|+|++-+-|++.-+ +.|...++.+
T Consensus 66 l~~l~~~~-~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~i~~a 132 (592)
T PRK09282 66 LRKLKKAL-PNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDV------------RNMEVAIKAA 132 (592)
T ss_pred HHHHHHhC-CCCEEEEEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecChH------------HHHHHHHHHH
Confidence 44555543 4578888721 22 124667778999999999988543 4566666666
Q ss_pred HcccCCCcEEe--eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 148 ARGAKRPLLVG--DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 148 ~Rga~~~fvVa--DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
++.- . .+.+ .+-+..+ .+++..++.+.++. ++|||.|.|-|-.. .+..++++|.++ ++|+-=|
T Consensus 133 k~~G-~-~v~~~i~~t~~p~-~t~~~~~~~a~~l~-~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~pi~~H 203 (592)
T PRK09282 133 KKAG-A-HVQGTISYTTSPV-HTIEKYVELAKELE-EMGCDSICIKDMAGLLTPYAAYELVKALKEEVDLPVQLH 203 (592)
T ss_pred HHcC-C-EEEEEEEeccCCC-CCHHHHHHHHHHHH-HcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCCCeEEEE
Confidence 5422 1 1222 2222334 37888999888887 69999999998732 344556776654 5666544
No 204
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=86.73 E-value=1.9 Score=38.78 Aligned_cols=70 Identities=23% Similarity=0.271 Sum_probs=52.4
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
++.+.++|+|.|.+.|++|. .+-+++-..++.+++..+. ..+.|-. +.+..-|+.|+...+ ++|
T Consensus 147 ~~~~~~~G~d~i~l~DT~G~----------~~P~~v~~lv~~l~~~~~~----~~l~~H~-Hn~~GlA~AN~laAi-~aG 210 (263)
T cd07943 147 AKLMESYGADCVYVTDSAGA----------MLPDDVRERVRALREALDP----TPVGFHG-HNNLGLAVANSLAAV-EAG 210 (263)
T ss_pred HHHHHHcCCCEEEEcCCCCC----------cCHHHHHHHHHHHHHhCCC----ceEEEEe-cCCcchHHHHHHHHH-HhC
Confidence 45667889999999999874 4666777777888877664 1234433 468889999999999 589
Q ss_pred CCEEEe
Q 026125 185 MDAIKL 190 (243)
Q Consensus 185 AdaVKL 190 (243)
|+.|--
T Consensus 211 a~~vd~ 216 (263)
T cd07943 211 ATRIDG 216 (263)
T ss_pred CCEEEe
Confidence 997653
No 205
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=86.71 E-value=10 Score=34.52 Aligned_cols=104 Identities=15% Similarity=0.126 Sum_probs=67.9
Q ss_pred HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 107 iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
..-+.|+|-|++..|.|= ...+|.+|=..-++.+++.+. . +++... + .|.+++++.|... ++.|||
T Consensus 28 ~l~~~Gv~Gl~~~GstGE-------~~~Lt~eEr~~l~~~~~~~~~-~-vi~gvg--~--~~~~~ai~~a~~a-~~~Gad 93 (279)
T cd00953 28 NLISKGIDYVFVAGTTGL-------GPSLSFQEKLELLKAYSDITD-K-VIFQVG--S--LNLEESIELARAA-KSFGIY 93 (279)
T ss_pred HHHHcCCcEEEEcccCCC-------cccCCHHHHHHHHHHHHHHcC-C-EEEEeC--c--CCHHHHHHHHHHH-HHcCCC
Confidence 345689999987656543 245788997777777777664 3 555543 2 4789999988665 479999
Q ss_pred EEEeCCC-------CCchHHHHHHHHHcCCceeec-------cCCcccccccc
Q 026125 187 AIKLEGG-------SPSRITAARGIVEAGIAVMGH-------VGLTPQAISVL 225 (243)
Q Consensus 187 aVKLEGg-------~~~~~~~i~~L~~~GIPV~GH-------iGLtPQ~~~~~ 225 (243)
+|-+=-- .+......+.+.+ ++||+=. +-|.|+....+
T Consensus 94 ~v~v~~P~y~~~~~~~~i~~yf~~v~~-~lpv~iYn~P~~tg~~l~~~~l~~L 145 (279)
T cd00953 94 AIASLPPYYFPGIPEEWLIKYFTDISS-PYPTFIYNYPKATGYDINARMAKEI 145 (279)
T ss_pred EEEEeCCcCCCCCCHHHHHHHHHHHHh-cCCEEEEeCccccCCCCCHHHHHHH
Confidence 9987222 1122233566788 9999843 33566555544
No 206
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=86.53 E-value=16 Score=33.44 Aligned_cols=116 Identities=21% Similarity=0.292 Sum_probs=63.2
Q ss_pred CCCHHHHHHhhhCCCc-EEEE-ecCCHH----HHHHHHHcCCCEEEeC-cchhhhhccCCCCccCCHHHHHHHHHHHHcc
Q 026125 78 RVTLTHLRQKHKNGEP-ITMV-TAYDYP----SAVHLDSAGIDICLVG-DSAAMVVHGHDTTLPITLEEMLVHCRAVARG 150 (243)
Q Consensus 78 ~~tv~~Lr~~kk~g~~-Itml-TAYD~~----sA~iae~AGiDiILVG-DSlgmv~lG~~dT~~vTldeMi~h~~aV~Rg 150 (243)
..+..++++... .| ..-+ ..+|.. .+..+++.|+|+|.+. |... .|. . ..+ ...+.+++.
T Consensus 104 ~~~~~~i~~~~~--~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~---~~~--~--~~~----~~i~~l~~~ 170 (299)
T cd02809 104 TTSLEEVAAAAP--GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPV---LGR--R--LTW----DDLAWLRSQ 170 (299)
T ss_pred cCCHHHHHHhcC--CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC---CCC--C--CCH----HHHHHHHHh
Confidence 457777876532 33 2222 223543 3445577899988542 2221 111 1 122 345678888
Q ss_pred cCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC--CCC-----chHHHHHHHHH---cCCceeeccCC
Q 026125 151 AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG--GSP-----SRITAARGIVE---AGIAVMGHVGL 217 (243)
Q Consensus 151 a~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEG--g~~-----~~~~~i~~L~~---~GIPV~GHiGL 217 (243)
++.|+++-.. .+++++ .++. ++|||+|-+.+ |.. .....+..+.+ ..|||++-=|+
T Consensus 171 ~~~pvivK~v------~s~~~a----~~a~-~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI 236 (299)
T cd02809 171 WKGPLILKGI------LTPEDA----LRAV-DAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGI 236 (299)
T ss_pred cCCCEEEeec------CCHHHH----HHHH-HCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCC
Confidence 8888777643 355554 4555 69999999954 221 12233444433 25888876444
No 207
>PRK08227 autoinducer 2 aldolase; Validated
Probab=86.51 E-value=1.7 Score=40.12 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=57.7
Q ss_pred hhhCCCcEEEEecCC----------HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 87 KHKNGEPITMVTAYD----------YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 87 ~kk~g~~ItmlTAYD----------~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
..+-|-|+..+.+.- +.-|+++.|.|.|+|=|-.+ . |. -+.|.++++.|.|
T Consensus 136 a~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~---------~------~~----f~~vv~a~~vPVv 196 (264)
T PRK08227 136 GLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYV---------E------EG----FERITAGCPVPIV 196 (264)
T ss_pred HHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCC---------H------HH----HHHHHHcCCCcEE
Confidence 456677877654321 23489999999999977632 0 11 1346668999999
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
++.=|= .+.++.++.+...++ +||.+|-+=
T Consensus 197 iaGG~k----~~~~~~L~~v~~ai~-aGa~Gv~~G 226 (264)
T PRK08227 197 IAGGKK----LPERDALEMCYQAID-EGASGVDMG 226 (264)
T ss_pred EeCCCC----CCHHHHHHHHHHHHH-cCCceeeec
Confidence 887654 367889999999995 999999773
No 208
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=86.50 E-value=10 Score=35.65 Aligned_cols=134 Identities=10% Similarity=-0.004 Sum_probs=74.0
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe--Cc--chhhhhccCC----CC----ccCCHHHHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV--GD--SAAMVVHGHD----TT----LPITLEEMLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV--GD--Slgmv~lG~~----dT----~~vTldeMi~h~ 144 (243)
+.+|..++.+..+. | .-.|+.+.+||+|.|-+ |. =+...+--+- |- ..--+.-+++..
T Consensus 140 ~~mt~~eI~~ii~~---------f-~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii 209 (338)
T cd02933 140 RALTTEEIPGIVAD---------F-RQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVV 209 (338)
T ss_pred CCCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHH
Confidence 46888888876532 1 24788899999999944 21 1111111100 10 111233356777
Q ss_pred HHHHcccCCCcEEeeCC------CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc------hHHHHHHHHH-cCCce
Q 026125 145 RAVARGAKRPLLVGDLP------FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS------RITAARGIVE-AGIAV 211 (243)
Q Consensus 145 ~aV~Rga~~~fvVaDmP------fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~------~~~~i~~L~~-~GIPV 211 (243)
++|++.++.-+|..=+. -+.++.+.|+.++.+..+. +.|+|.|.+.+|... ....++.+.+ -+|||
T Consensus 210 ~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~-~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipv 288 (338)
T cd02933 210 DAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELN-KRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPL 288 (338)
T ss_pred HHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHH-HcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCE
Confidence 88888765423443231 1123447889888877665 689999999666321 1122222222 26899
Q ss_pred eeccCCcccc
Q 026125 212 MGHVGLTPQA 221 (243)
Q Consensus 212 ~GHiGLtPQ~ 221 (243)
++==|++|+.
T Consensus 289 i~~G~i~~~~ 298 (338)
T cd02933 289 IAAGGYDAES 298 (338)
T ss_pred EEECCCCHHH
Confidence 8754444443
No 209
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=86.43 E-value=7.1 Score=38.86 Aligned_cols=94 Identities=12% Similarity=0.161 Sum_probs=60.2
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE--eeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV--GDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV--aDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
-+.+-++|+|++-+-|++.- ++.|...++.+++.- . .+. .+.-|+.. .+++..++.|.++. +
T Consensus 101 v~~A~~~Gvd~irif~~lnd------------~~n~~~~i~~ak~~G-~-~v~~~i~~t~~p~-~t~e~~~~~a~~l~-~ 164 (467)
T PRK14041 101 VKKVAEYGLDIIRIFDALND------------IRNLEKSIEVAKKHG-A-HVQGAISYTVSPV-HTLEYYLEFARELV-D 164 (467)
T ss_pred HHHHHHCCcCEEEEEEeCCH------------HHHHHHHHHHHHHCC-C-EEEEEEEeccCCC-CCHHHHHHHHHHHH-H
Confidence 36677889999999988854 345555555554322 1 233 23333333 36788888887776 6
Q ss_pred hCCCEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 183 GGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 183 aGAdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
.|||.|.|-|-.. .+..++++|.++ ++|+-=|
T Consensus 165 ~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H 202 (467)
T PRK14041 165 MGVDSICIKDMAGLLTPKRAYELVKALKKKFGVPVEVH 202 (467)
T ss_pred cCCCEEEECCccCCcCHHHHHHHHHHHHHhcCCceEEE
Confidence 9999999998733 244556666654 6776555
No 210
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=86.36 E-value=11 Score=34.46 Aligned_cols=106 Identities=19% Similarity=0.157 Sum_probs=67.6
Q ss_pred HHHcC-CCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 026125 108 LDSAG-IDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (243)
Q Consensus 108 ae~AG-iDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGA 185 (243)
.-++| +|.|+++.|.|= ...+|.||-..-++.+++.++ +..|++.... .+.+++++.+... ++.||
T Consensus 30 ~i~~G~v~gi~~~GstGE-------~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~----~~t~~~i~la~~a-~~~Ga 97 (290)
T TIGR00683 30 NIDKMKVDGLYVGGSTGE-------NFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS----VNLKEAVELGKYA-TELGY 97 (290)
T ss_pred HHhCCCcCEEEECCcccc-------cccCCHHHHHHHHHHHHHHhCCCCcEEEecCC----CCHHHHHHHHHHH-HHhCC
Confidence 45678 999988766643 235788987777776665443 3335655433 4678998888664 57999
Q ss_pred CEEEeCCC------CCchHHHHHHHHHc--CCcee-------eccCCcccccccc
Q 026125 186 DAIKLEGG------SPSRITAARGIVEA--GIAVM-------GHVGLTPQAISVL 225 (243)
Q Consensus 186 daVKLEGg------~~~~~~~i~~L~~~--GIPV~-------GHiGLtPQ~~~~~ 225 (243)
|+|-+--- .+......+.+.++ ++||+ .+..|.|+....+
T Consensus 98 d~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L 152 (290)
T TIGR00683 98 DCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGEL 152 (290)
T ss_pred CEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHH
Confidence 99988322 12233334556553 68885 5666766655544
No 211
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=86.26 E-value=3 Score=36.06 Aligned_cols=66 Identities=24% Similarity=0.238 Sum_probs=39.6
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
-.|+..+++|+|.|-+=|--+. +..-....+.|++..+.|+++.| |-.+++++ +.+.+
T Consensus 35 ~~A~~~~~~GA~~l~v~~~~~~------------~~g~~~~~~~i~~~v~iPi~~~~-----~i~~~~~v-----~~~~~ 92 (217)
T cd00331 35 EIAKAYEKAGAAAISVLTEPKY------------FQGSLEDLRAVREAVSLPVLRKD-----FIIDPYQI-----YEARA 92 (217)
T ss_pred HHHHHHHHcCCCEEEEEeCccc------------cCCCHHHHHHHHHhcCCCEEECC-----eecCHHHH-----HHHHH
Confidence 3577889999999955332111 11112455667776677866543 33455544 44457
Q ss_pred hCCCEEEe
Q 026125 183 GGMDAIKL 190 (243)
Q Consensus 183 aGAdaVKL 190 (243)
+|||+|.+
T Consensus 93 ~Gad~v~l 100 (217)
T cd00331 93 AGADAVLL 100 (217)
T ss_pred cCCCEEEE
Confidence 99999985
No 212
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=86.13 E-value=5.5 Score=38.37 Aligned_cols=94 Identities=23% Similarity=0.362 Sum_probs=61.6
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhh-------ccCCCCccCCHHHHHHHHHHHHcccC
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVV-------HGHDTTLPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~-------lG~~dT~~vTldeMi~h~~aV~Rga~ 152 (243)
.+..|++.+- .-+|..=++=++..|.-..++|+|.|.||=.-|.++ .|+| .---++.|..+++...
T Consensus 139 ~ik~ik~~~~-~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~P------Q~tAv~~~a~~a~~~~ 211 (352)
T PF00478_consen 139 MIKKIKKKFP-DVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVP------QLTAVYECAEAARDYG 211 (352)
T ss_dssp HHHHHHHHST-TSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCT------HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhCC-CceEEecccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCc------HHHHHHHHHHHhhhcc
Confidence 3455555432 356677789999999999999999999996555544 2444 3334677777777665
Q ss_pred CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 153 ~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
-| ||+|=.. . +.-+. .+.+ .+|||+|.+
T Consensus 212 v~-iIADGGi---~-~sGDi----~KAl-a~GAd~VMl 239 (352)
T PF00478_consen 212 VP-IIADGGI---R-TSGDI----VKAL-AAGADAVML 239 (352)
T ss_dssp SE-EEEESS----S-SHHHH----HHHH-HTT-SEEEE
T ss_pred Cc-eeecCCc---C-cccce----eeee-eecccceee
Confidence 44 8999655 2 34555 3455 589999998
No 213
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=85.59 E-value=13 Score=34.64 Aligned_cols=119 Identities=14% Similarity=0.151 Sum_probs=69.2
Q ss_pred EEEecCCHHH----HHHHHHcCCCEEE--eCcchhh-hhccCCCCccCCHHHHHHHHHHHHcccCCCcEE-eeCCCCCCc
Q 026125 95 TMVTAYDYPS----AVHLDSAGIDICL--VGDSAAM-VVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGTYE 166 (243)
Q Consensus 95 tmlTAYD~~s----A~iae~AGiDiIL--VGDSlgm-v~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV-aDmPfgsY~ 166 (243)
+.+...|... |+++++.|+|.|= .|=.... +-.|.-+...-..+-+...+++|+.+.+.|+.+ .-.+| .
T Consensus 69 vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~---~ 145 (321)
T PRK10415 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGW---A 145 (321)
T ss_pred EEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccc---c
Confidence 4455555443 6667788999993 4433322 223333333444566677778888887666443 33333 2
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------chHHHHHHHHH-cCCceeeccCC
Q 026125 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVE-AGIAVMGHVGL 217 (243)
Q Consensus 167 ~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-------~~~~~i~~L~~-~GIPV~GHiGL 217 (243)
.+.+++++.|.++ +++|+|++-+.|... -..+.|+.+.+ -+|||+|==|+
T Consensus 146 ~~~~~~~~~a~~l-e~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI 203 (321)
T PRK10415 146 PEHRNCVEIAQLA-EDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDI 203 (321)
T ss_pred CCcchHHHHHHHH-HHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCC
Confidence 3445666666554 478999998876521 11234555555 47999986555
No 214
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=85.39 E-value=3.3 Score=38.69 Aligned_cols=96 Identities=19% Similarity=0.270 Sum_probs=58.4
Q ss_pred CcEEEEe--cCC-----HHHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC
Q 026125 92 EPITMVT--AYD-----YPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (243)
Q Consensus 92 ~~ItmlT--AYD-----~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg 163 (243)
-|+++=. -|| ...|++++++|+|+|-| |-. ...||.-. ++.+ ...+.|++..+.| |++. |
T Consensus 134 ~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt---~~~~y~g~-~~~~----~~i~~ik~~~~iP-Vi~n---G 201 (312)
T PRK10550 134 LPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRT---KEDGYRAE-HINW----QAIGEIRQRLTIP-VIAN---G 201 (312)
T ss_pred cceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCC---CccCCCCC-cccH----HHHHHHHhhcCCc-EEEe---C
Confidence 5777653 243 25778899999999966 322 23344321 2234 3455677777777 4543 2
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHH
Q 026125 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGI 204 (243)
Q Consensus 164 sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L 204 (243)
+- .|++++ .++++++|||+|.+--|.-..+.+.+.+
T Consensus 202 dI-~t~~da----~~~l~~~g~DgVmiGRg~l~nP~lf~~~ 237 (312)
T PRK10550 202 EI-WDWQSA----QQCMAITGCDAVMIGRGALNIPNLSRVV 237 (312)
T ss_pred Cc-CCHHHH----HHHHhccCCCEEEEcHHhHhCcHHHHHh
Confidence 33 477888 5677789999999966633334444433
No 215
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=85.26 E-value=13 Score=32.00 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=60.7
Q ss_pred HHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC
Q 026125 83 HLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF 162 (243)
Q Consensus 83 ~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf 162 (243)
.+++.++.+.+ .++.+++...++.++++|+|.|.+... . .-|+.........+ ..+.+++..+.| +++.-
T Consensus 94 ~~~~~~~~~i~-~i~~v~~~~~~~~~~~~gad~i~~~~~-~--~~G~~~~~~~~~~~---~i~~i~~~~~~P-vi~~G-- 163 (236)
T cd04730 94 VVERLKAAGIK-VIPTVTSVEEARKAEAAGADALVAQGA-E--AGGHRGTFDIGTFA---LVPEVRDAVDIP-VIAAG-- 163 (236)
T ss_pred HHHHHHHcCCE-EEEeCCCHHHHHHHHHcCCCEEEEeCc-C--CCCCCCccccCHHH---HHHHHHHHhCCC-EEEEC--
Confidence 34444444444 566778888899999999998875322 1 12333322222233 334555555666 45543
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC------CCchHHHHHHHHHcCC
Q 026125 163 GTYESSTNQAVDTAVRILKEGGMDAIKLEGG------SPSRITAARGIVEAGI 209 (243)
Q Consensus 163 gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg------~~~~~~~i~~L~~~GI 209 (243)
+. .+++++ .+++ +.|||+|-+-.. ......+.+.|.+.+.
T Consensus 164 -GI-~~~~~v----~~~l-~~GadgV~vgS~l~~~~e~~~~~~~~~~~~~~~~ 209 (236)
T cd04730 164 -GI-ADGRGI----AAAL-ALGADGVQMGTRFLATEESGASPAYKQALLAATA 209 (236)
T ss_pred -CC-CCHHHH----HHHH-HcCCcEEEEchhhhcCcccCCCHHHHHHHHcCCC
Confidence 33 234554 5566 489999988433 1112344566666665
No 216
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=85.18 E-value=7.3 Score=35.21 Aligned_cols=88 Identities=20% Similarity=0.196 Sum_probs=58.2
Q ss_pred CCCcEEEEecCCHH----HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCC
Q 026125 90 NGEPITMVTAYDYP----SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTY 165 (243)
Q Consensus 90 ~g~~ItmlTAYD~~----sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY 165 (243)
+=++|.++|.|... .....+++||++.-.+. + |.++. .-|+.
T Consensus 119 g~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~-~-----~~~~~----------------------~~ia~------ 164 (239)
T TIGR02990 119 GVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTC-L-----GLTDD----------------------REMAR------ 164 (239)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeec-c-----CCCCC----------------------ceeee------
Confidence 33899999999764 45567889999986541 2 22211 01111
Q ss_pred cCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHH-HHcCCceee
Q 026125 166 ESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGI-VEAGIAVMG 213 (243)
Q Consensus 166 ~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L-~~~GIPV~G 213 (243)
.+++...+.+.++- ..+||+|.+-+..-...++|+.| .+-|+||.-
T Consensus 165 -i~p~~i~~~~~~~~-~~~aDAifisCTnLrt~~vi~~lE~~lGkPVls 211 (239)
T TIGR02990 165 -ISPDCIVEAALAAF-DPDADALFLSCTALRAATCAQRIEQAIGKPVVT 211 (239)
T ss_pred -cCHHHHHHHHHHhc-CCCCCEEEEeCCCchhHHHHHHHHHHHCCCEEE
Confidence 35666655555554 57899999998876677778877 556999963
No 217
>PRK02227 hypothetical protein; Provisional
Probab=85.02 E-value=6.8 Score=35.95 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=50.8
Q ss_pred EEecCCHHHHHHHHHcCCCEEEeCc----chhhhhccCCCCccCCHHHHHHHHHHHHcc-cCCCcEEeeCCCCCCcCCHH
Q 026125 96 MVTAYDYPSAVHLDSAGIDICLVGD----SAAMVVHGHDTTLPITLEEMLVHCRAVARG-AKRPLLVGDLPFGTYESSTN 170 (243)
Q Consensus 96 mlTAYD~~sA~iae~AGiDiILVGD----Slgmv~lG~~dT~~vTldeMi~h~~aV~Rg-a~~~fvVaDmPfgsY~~s~e 170 (243)
.+.+-|..+|..+-++|.|+|=+=| |||. -..+.|....+...+ .+.+-.++|+|+.. .
T Consensus 4 LvSvr~~eEA~~Al~~GaDiIDvK~P~~GaLGA-----------~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p-----~ 67 (238)
T PRK02227 4 LVSVRNLEEALEALAGGADIIDVKNPKEGSLGA-----------NFPWVIREIVAAVPGRKPVSATIGDVPYKP-----G 67 (238)
T ss_pred eeccCCHHHHHHHHhcCCCEEEccCCCCCCCCC-----------CCHHHHHHHHHHhCCCCCceeeccCCCCCc-----h
Confidence 4577889999999999999997654 4433 223344444444443 44455679999833 3
Q ss_pred HHHHHHHHHHHHhCCCEEEeC
Q 026125 171 QAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 171 ~Av~nA~Rl~keaGAdaVKLE 191 (243)
.+...+.... ++|+|-||+=
T Consensus 68 ~~~~aa~~~a-~~GvDyVKvG 87 (238)
T PRK02227 68 TISLAALGAA-ATGADYVKVG 87 (238)
T ss_pred HHHHHHHHHH-hhCCCEEEEc
Confidence 3333344444 6899999983
No 218
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=84.97 E-value=5.8 Score=36.02 Aligned_cols=81 Identities=20% Similarity=0.162 Sum_probs=46.3
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCC--------CccCC----HHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDT--------TLPIT----LEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTN 170 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~d--------T~~vT----ldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e 170 (243)
..|+.++++|+|.|-+..++........+ ++.++ ..--+..++.+++..+.| |++. |+. .|++
T Consensus 173 ~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ip-vi~~---GGI-~s~~ 247 (300)
T TIGR01037 173 EIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIP-IIGV---GGI-TSFE 247 (300)
T ss_pred HHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCC-EEEE---CCC-CCHH
Confidence 45788999999999764333210000000 01111 111245566777777766 4543 345 4788
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCC
Q 026125 171 QAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 171 ~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
++ .+++. .|||+|.+=-+
T Consensus 248 da----~~~l~-~GAd~V~igr~ 265 (300)
T TIGR01037 248 DA----LEFLM-AGASAVQVGTA 265 (300)
T ss_pred HH----HHHHH-cCCCceeecHH
Confidence 88 56774 89999987433
No 219
>PRK07534 methionine synthase I; Validated
Probab=84.93 E-value=6.1 Score=37.40 Aligned_cols=123 Identities=24% Similarity=0.248 Sum_probs=66.3
Q ss_pred HcCCCEEEeCcchhhhh--ccCCCCccCCHHHHHHH----HHHHHccc-CCCcEEeeC-CCCCCc-----CCHHHHH---
Q 026125 110 SAGIDICLVGDSAAMVV--HGHDTTLPITLEEMLVH----CRAVARGA-KRPLLVGDL-PFGTYE-----SSTNQAV--- 173 (243)
Q Consensus 110 ~AGiDiILVGDSlgmv~--lG~~dT~~vTldeMi~h----~~aV~Rga-~~~fvVaDm-PfgsY~-----~s~e~Av--- 173 (243)
+||.|+|++- +.+... ++... ..-.++++... ++.++... ...+|.+++ |+|.|- .+.+++.
T Consensus 56 ~AGAdiI~Tn-Ty~as~~~l~~~~-~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l~~~~~~~~~e~~~~~ 133 (336)
T PRK07534 56 DAGSDIILTN-SFGGTAARLKLHD-AQDRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIMEPMGALTHALAVEAF 133 (336)
T ss_pred HhcCCEEEec-CcccCHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCccccCCCCCCCHHHHHHHH
Confidence 5788888843 444432 22221 11224454433 33333222 246788998 455531 1344433
Q ss_pred HHHHHHHHHhCCCEEEeCCCC--CchHHHHHHHHHcCCceeeccCCcccccccccCccccccCHHhhcc
Q 026125 174 DTAVRILKEGGMDAIKLEGGS--PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVK 240 (243)
Q Consensus 174 ~nA~Rl~keaGAdaVKLEGg~--~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvqGkt~~~A~~ 240 (243)
+--++.+.++|+|.+-+|=-. .+...+++++.+.++||+--+=+ + -+|.-.-|-+.+++..
T Consensus 134 ~~qi~~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~~~~Pv~vSft~--~----~~g~l~~G~~~~~~~~ 196 (336)
T PRK07534 134 HEQAEGLKAGGADVLWVETISAPEEIRAAAEAAKLAGMPWCGTMSF--D----TAGRTMMGLTPADLAD 196 (336)
T ss_pred HHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcCCeEEEEEEE--C----CCCeeCCCCcHHHHHH
Confidence 223445557899999999543 23445567777789999965543 2 2345555666555443
No 220
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=84.92 E-value=15 Score=31.93 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCCEEEeCcc-hhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDS-AAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDS-lgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
...|+.++++|+|.+++.|- -....-|+ . +...+.+++.++.|++.+. +. .|.+++ .+.+
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g~------~----~~~~~~i~~~~~ipvia~G----Gi-~s~~di----~~~l 216 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKGY------D----LELIKTVSDAVSIPVIALG----GA-GSLDDL----VEVA 216 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCCC------C----HHHHHHHHhhCCCCEEEEC----CC-CCHHHH----HHHH
Confidence 36678999999998877651 11111222 2 3334667777777855432 33 367777 4545
Q ss_pred HHhCCCEEEe
Q 026125 181 KEGGMDAIKL 190 (243)
Q Consensus 181 keaGAdaVKL 190 (243)
++.||++|-+
T Consensus 217 ~~~gadgV~v 226 (232)
T TIGR03572 217 LEAGASAVAA 226 (232)
T ss_pred HHcCCCEEEE
Confidence 5789999976
No 221
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=84.92 E-value=12 Score=34.12 Aligned_cols=105 Identities=23% Similarity=0.190 Sum_probs=65.0
Q ss_pred HHHc-CCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 026125 108 LDSA-GIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (243)
Q Consensus 108 ae~A-GiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGA 185 (243)
.-++ |+|-|+++.|.|-. ..+|.+|-..-++.+++.+. +..|++...- .|.+++++.|... ++.||
T Consensus 30 l~~~~Gv~gi~~~GstGE~-------~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~----~~~~~ai~~a~~a-~~~Ga 97 (288)
T cd00954 30 LIEKQGVDGLYVNGSTGEG-------FLLSVEERKQIAEIVAEAAKGKVTLIAHVGS----LNLKESQELAKHA-EELGY 97 (288)
T ss_pred HHhcCCCCEEEECcCCcCc-------ccCCHHHHHHHHHHHHHHhCCCCeEEeccCC----CCHHHHHHHHHHH-HHcCC
Confidence 3346 99999887666442 35788887777776665544 3345665432 4778999988655 57999
Q ss_pred CEEEeCCC------CCchHHHHHHHHHc--CCcee-------eccCCccccccc
Q 026125 186 DAIKLEGG------SPSRITAARGIVEA--GIAVM-------GHVGLTPQAISV 224 (243)
Q Consensus 186 daVKLEGg------~~~~~~~i~~L~~~--GIPV~-------GHiGLtPQ~~~~ 224 (243)
|+|-+--- .+......+.+.++ ++||+ .++.|.|+....
T Consensus 98 d~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~ 151 (288)
T cd00954 98 DAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLE 151 (288)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHH
Confidence 99975221 11223334556664 68887 455566654433
No 222
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=84.85 E-value=10 Score=37.99 Aligned_cols=87 Identities=18% Similarity=0.171 Sum_probs=51.0
Q ss_pred EEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCC-ccC-CHHHHHHHHHHHHc-----ccCCCcEEeeCCCCCCc
Q 026125 94 ITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPI-TLEEMLVHCRAVAR-----GAKRPLLVGDLPFGTYE 166 (243)
Q Consensus 94 ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT-~~v-TldeMi~h~~aV~R-----ga~~~fvVaDmPfgsY~ 166 (243)
|..=|+.++.-|+.+-+||+|.|.||=.-|..+-=..-+ ..+ +++-+...++++++ |...| ||+|=.+ -
T Consensus 287 V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~-viadgGi-r-- 362 (502)
T PRK07107 287 VGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIP-ICSDGGI-V-- 362 (502)
T ss_pred EEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcce-EEEcCCC-C--
Confidence 333369999999999999999999875555222112111 112 33333333333322 32234 8899665 2
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 167 SSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 167 ~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
+.-+. .+.+ .+|||+|.+
T Consensus 363 -~~gdi----~KAl-a~GA~~vm~ 380 (502)
T PRK07107 363 -YDYHM----TLAL-AMGADFIML 380 (502)
T ss_pred -chhHH----HHHH-HcCCCeeee
Confidence 33444 3455 489999988
No 223
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=84.73 E-value=2.9 Score=38.06 Aligned_cols=72 Identities=14% Similarity=0.177 Sum_probs=52.7
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHh
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~kea 183 (243)
.++.+.++|+|.|.+.|++|. .+-+++-...+++++..+... .+.|-+ +.+..-|+.|+...+ ++
T Consensus 143 ~~~~~~~~g~~~i~l~DT~G~----------~~P~~v~~lv~~l~~~~~~~~---~i~~H~-Hn~~Gla~AN~laA~-~a 207 (266)
T cd07944 143 LLELVNEIKPDVFYIVDSFGS----------MYPEDIKRIISLLRSNLDKDI---KLGFHA-HNNLQLALANTLEAI-EL 207 (266)
T ss_pred HHHHHHhCCCCEEEEecCCCC----------CCHHHHHHHHHHHHHhcCCCc---eEEEEe-CCCccHHHHHHHHHH-Hc
Confidence 455677889999999999874 567778888888887665200 123433 368889999999999 58
Q ss_pred CCCEEEe
Q 026125 184 GMDAIKL 190 (243)
Q Consensus 184 GAdaVKL 190 (243)
||+.|-.
T Consensus 208 Ga~~vd~ 214 (266)
T cd07944 208 GVEIIDA 214 (266)
T ss_pred CCCEEEE
Confidence 9988754
No 224
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=84.66 E-value=29 Score=32.37 Aligned_cols=145 Identities=10% Similarity=0.088 Sum_probs=93.5
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 026125 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 79 ~tv~~-Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~ 152 (243)
+|..+ |+..++++--+-..++|++.+++ .||+.+.++|+ +..+. ..| ..++.+...++..++.++
T Consensus 4 v~~k~il~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~----~~~-----~g~~~~~~~~~~~A~~~~ 74 (284)
T PRK09195 4 VSTKQMLNNAQRGGYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGT----FSY-----AGTEYLLAIVSAAAKQYH 74 (284)
T ss_pred CcHHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhH----Hhh-----CCHHHHHHHHHHHHHHCC
Confidence 45555 45567777889999999999986 57888999887 43322 222 335667777888888887
Q ss_pred CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCccccccc-
Q 026125 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQAISV- 224 (243)
Q Consensus 153 ~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ~~~~- 224 (243)
-| |+.-+..+. +.|.. .+.+ ++|.+.|.+.|+..- +..+++.--..||+|=|=||-++-.-.-
T Consensus 75 VP-V~lHLDHg~---~~e~i----~~Ai-~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~ 145 (284)
T PRK09195 75 HP-LALHLDHHE---KFDDI----AQKV-RSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDL 145 (284)
T ss_pred CC-EEEECCCCC---CHHHH----HHHH-HcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCc
Confidence 77 677777742 44443 5666 489999999888422 2344555667899997766666522111
Q ss_pred -ccCccccccCHHhhccc
Q 026125 225 -LGGFRPQGKNVTSAVKV 241 (243)
Q Consensus 225 -~GGykvqGkt~~~A~~l 241 (243)
.++....-.+.|+|+++
T Consensus 146 ~~~~~~~~~T~peea~~F 163 (284)
T PRK09195 146 QVDEADALYTDPAQAREF 163 (284)
T ss_pred ccccccccCCCHHHHHHH
Confidence 01112233567777764
No 225
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=84.52 E-value=30 Score=33.44 Aligned_cols=135 Identities=11% Similarity=0.062 Sum_probs=84.5
Q ss_pred HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhcc---CCCC----ccCCHHHHHHHHHHHHccc
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHG---HDTT----LPITLEEMLVHCRAVARGA 151 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG---~~dT----~~vTldeMi~h~~aV~Rga 151 (243)
|++.++++--+-..++|++.+++ .||+...++|| +..+... .+| +++. .-....++...++..++.+
T Consensus 13 L~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~ 91 (350)
T PRK09197 13 FDRAKENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGAA-FIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHY 91 (350)
T ss_pred HHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhHh-hcCCccccccchhhhhhhHHHHHHHHHHHHHHC
Confidence 45567788899999999999986 46888999887 4433322 223 2220 0111222666777788888
Q ss_pred CCCcEEeeCCCCCC--cCCHHHHHHHHHHHHHH---hCCCEEEeCCCCCch-------HHHHHHHHHcCCceeeccCCcc
Q 026125 152 KRPLLVGDLPFGTY--ESSTNQAVDTAVRILKE---GGMDAIKLEGGSPSR-------ITAARGIVEAGIAVMGHVGLTP 219 (243)
Q Consensus 152 ~~~fvVaDmPfgsY--~~s~e~Av~nA~Rl~ke---aGAdaVKLEGg~~~~-------~~~i~~L~~~GIPV~GHiGLtP 219 (243)
+-| |+.-+..+.- -....++++...+.+++ .|.+.|.+.|+..-. ..+++..-..||+|=|=||-++
T Consensus 92 ~VP-ValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVEaELG~Ig 170 (350)
T PRK09197 92 GVP-VILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTLEIELGVTG 170 (350)
T ss_pred CCC-EEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccC
Confidence 777 6778878522 11344555554444432 359999998885332 2344555567999988777776
Q ss_pred c
Q 026125 220 Q 220 (243)
Q Consensus 220 Q 220 (243)
.
T Consensus 171 g 171 (350)
T PRK09197 171 G 171 (350)
T ss_pred C
Confidence 4
No 226
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=84.39 E-value=12 Score=36.49 Aligned_cols=97 Identities=15% Similarity=0.145 Sum_probs=63.1
Q ss_pred CCCHHHHHHhhh-CCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 78 RVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 78 ~~tv~~Lr~~kk-~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
..|..||....+ -+-|+++=++-+...|+.+.++|+|.|.|+..-|-.. |..+-|++-+....+++. +...|
T Consensus 231 ~ltW~di~~lr~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~----d~~~~t~~~L~~i~~a~~---~~~~v 303 (381)
T PRK11197 231 SISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQL----DGVLSSARALPAIADAVK---GDITI 303 (381)
T ss_pred CCCHHHHHHHHHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCC----CCcccHHHHHHHHHHHhc---CCCeE
Confidence 467777766432 3569999999999999999999999998875433322 233445544444334442 23337
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
++|=. . .+..+. .+.+ ..||++|-+
T Consensus 304 i~dGG---I-r~g~Di----~KAL-aLGA~~V~i 328 (381)
T PRK11197 304 LADSG---I-RNGLDV----VRMI-ALGADTVLL 328 (381)
T ss_pred EeeCC---c-CcHHHH----HHHH-HcCcCceeE
Confidence 88854 4 355666 3455 479999987
No 227
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=84.36 E-value=5.1 Score=37.00 Aligned_cols=73 Identities=19% Similarity=0.302 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCCEEEeC-cchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVG-DSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 103 ~sA~iae~AGiDiILVG-DSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
..|..++++|+|.|.+. -.. ..||+. +.. +..++.|++..+.|+ ++. |+. .+++++ .++++
T Consensus 151 ~~a~~l~~~G~d~i~vh~r~~---~~~~~~--~~~----~~~i~~i~~~~~ipv-i~n---GgI-~~~~da----~~~l~ 212 (319)
T TIGR00737 151 EAARIAEDAGAQAVTLHGRTR---AQGYSG--EAN----WDIIARVKQAVRIPV-IGN---GDI-FSPEDA----KAMLE 212 (319)
T ss_pred HHHHHHHHhCCCEEEEEcccc---cccCCC--chh----HHHHHHHHHcCCCcE-EEe---CCC-CCHHHH----HHHHH
Confidence 45778899999999653 221 223432 222 455677888888774 443 344 467777 56776
Q ss_pred HhCCCEEEeCCC
Q 026125 182 EGGMDAIKLEGG 193 (243)
Q Consensus 182 eaGAdaVKLEGg 193 (243)
++|||+|.+--+
T Consensus 213 ~~gad~VmigR~ 224 (319)
T TIGR00737 213 TTGCDGVMIGRG 224 (319)
T ss_pred hhCCCEEEEChh
Confidence 789999999433
No 228
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=84.29 E-value=16 Score=37.35 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=69.9
Q ss_pred HHHHHHhhhCCCcEEEEec------CCH-------HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHH
Q 026125 81 LTHLRQKHKNGEPITMVTA------YDY-------PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTA------YD~-------~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV 147 (243)
+..|++.. .+.+|.|+.- |.- .+-..+.++|+|++-+.|++.- ++.|....+.+
T Consensus 67 lr~l~~~~-~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd------------~~~~~~ai~~a 133 (593)
T PRK14040 67 LRELKKAM-PNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMND------------PRNLETALKAV 133 (593)
T ss_pred HHHHHHhC-CCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCc------------HHHHHHHHHHH
Confidence 55566653 4577776543 221 2355677889999999997743 35566666666
Q ss_pred HcccCCCc-EE--eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 148 ARGAKRPL-LV--GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 148 ~Rga~~~f-vV--aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
++.-.... .+ .+-|. | +.+..++.+..+. +.|||.|.|-|-.. .+..++++|.++ ++|+--|
T Consensus 134 k~~G~~~~~~i~yt~~p~--~--~~~~~~~~a~~l~-~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H 204 (593)
T PRK14040 134 RKVGAHAQGTLSYTTSPV--H--TLQTWVDLAKQLE-DMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVDVPLHLH 204 (593)
T ss_pred HHcCCeEEEEEEEeeCCc--c--CHHHHHHHHHHHH-HcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcCCeEEEE
Confidence 64222210 12 23332 2 5666666666555 79999999998732 344566777654 5776666
No 229
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=84.04 E-value=20 Score=32.01 Aligned_cols=79 Identities=19% Similarity=0.138 Sum_probs=44.6
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
+..+-+.|.|-|=+-=.++...-| .++++....++|++.+....+-+=++. +| .+.++ +..|.|+..++|
T Consensus 76 ~~~Av~~GAdEiDvv~n~g~l~~g-------~~~~v~~ei~~i~~~~~g~~lKvIlE~-~~-L~~~e-i~~a~~ia~eaG 145 (211)
T TIGR00126 76 TKEAIKYGADEVDMVINIGALKDG-------NEEVVYDDIRAVVEACAGVLLKVIIET-GL-LTDEE-IRKACEICIDAG 145 (211)
T ss_pred HHHHHHcCCCEEEeecchHhhhCC-------cHHHHHHHHHHHHHHcCCCeEEEEEec-CC-CCHHH-HHHHHHHHHHhC
Confidence 344456788866322122221111 345566666677765542222233444 44 35555 447778888999
Q ss_pred CCEEEeCCC
Q 026125 185 MDAIKLEGG 193 (243)
Q Consensus 185 AdaVKLEGg 193 (243)
||-||..-|
T Consensus 146 ADfvKTsTG 154 (211)
T TIGR00126 146 ADFVKTSTG 154 (211)
T ss_pred CCEEEeCCC
Confidence 999999855
No 230
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=84.04 E-value=30 Score=32.89 Aligned_cols=112 Identities=13% Similarity=0.228 Sum_probs=74.0
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE--EeC---cchhhhhcc---CC---CCccCCHHHHHHHHHHHHc
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC--LVG---DSAAMVVHG---HD---TTLPITLEEMLVHCRAVAR 149 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI--LVG---DSlgmv~lG---~~---dT~~vTldeMi~h~~aV~R 149 (243)
+.-.+.+.+.|-++-+-..|+...|.+|.+||++.| .|| |+.-.. .| |+ +.+-..+.++. +..++
T Consensus 138 i~A~~~L~~~GI~vN~TliFS~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~-~g~~~~~~~~d~Gv~~v~~i~---~~~k~ 213 (317)
T TIGR00874 138 IRAAEELEKEGIHCNLTLLFSFVQAIACAEAKVTLISPFVGRILDWYKAA-TGKKEYSIEEDPGVASVKKIY---NYYKK 213 (317)
T ss_pred HHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEeecchHhHhhhhc-cCccccccccCchHHHHHHHH---HHHHH
Confidence 556677888999999999999999999999999999 588 321110 12 11 22222233332 22333
Q ss_pred -ccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeecc
Q 026125 150 -GAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHV 215 (243)
Q Consensus 150 -ga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHi 215 (243)
+.+.- |++- || .|.++..+ -+|||.+-+- +.+.+.|.+.+-||.-++
T Consensus 214 ~g~~T~-Im~A----Sf-Rn~~qv~~-------laG~d~~Ti~------p~ll~~L~~~~~~~~~~l 261 (317)
T TIGR00874 214 HGYPTE-VMGA----SF-RNKEEILA-------LAGCDRLTIS------PALLDELKESTGPVERKL 261 (317)
T ss_pred cCCCcE-EEee----cc-CCHHHHHH-------HHCCCeEeCC------HHHHHHHHhCCCCcCccC
Confidence 44433 3322 67 48888853 3699999774 566789999999998776
No 231
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=83.89 E-value=11 Score=34.90 Aligned_cols=94 Identities=19% Similarity=0.163 Sum_probs=61.6
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
.-++|+|-|++..|.|=. ..+|.||-..-++.++..++ +..|++... ..+.+++++.|... ++.|||
T Consensus 38 li~~Gv~Gi~v~GstGE~-------~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~----~~~t~~ai~~a~~A-~~~Gad 105 (309)
T cd00952 38 LIAAGVDGILTMGTFGEC-------ATLTWEEKQAFVATVVETVAGRVPVFVGAT----TLNTRDTIARTRAL-LDLGAD 105 (309)
T ss_pred HHHcCCCEEEECcccccc-------hhCCHHHHHHHHHHHHHHhCCCCCEEEEec----cCCHHHHHHHHHHH-HHhCCC
Confidence 335799999887666542 35799998877777665444 344565542 23678999988654 479999
Q ss_pred EEEeCCC------CCchHHHHHHHHHc--CCceee
Q 026125 187 AIKLEGG------SPSRITAARGIVEA--GIAVMG 213 (243)
Q Consensus 187 aVKLEGg------~~~~~~~i~~L~~~--GIPV~G 213 (243)
+|-+--- .+......+.+.++ ++||+=
T Consensus 106 ~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~i 140 (309)
T cd00952 106 GTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAI 140 (309)
T ss_pred EEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEE
Confidence 9987633 12233445667775 488873
No 232
>PRK13753 dihydropteroate synthase; Provisional
Probab=83.84 E-value=17 Score=34.02 Aligned_cols=92 Identities=17% Similarity=0.220 Sum_probs=56.3
Q ss_pred HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC--CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK--RPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 107 iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~--~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
..-+.|.|+|=+|.-. ..|+..+|+.+|=+..+.-|.+... ...|..| +|. ++.+ ...+ ++|
T Consensus 33 ~m~~~GAdIIDIGgeS-----TrPga~~vs~eeE~~Rv~pvI~~l~~~~~~ISID----T~~--~~va----~~al-~aG 96 (279)
T PRK13753 33 EMLRVGSDVVDVGPAA-----SHPDARPVSPADEIRRIAPLLDALSDQMHRVSID----SFQ--PETQ----RYAL-KRG 96 (279)
T ss_pred HHHHCCCcEEEECCCC-----CCCCCCcCCHHHHHHHHHHHHHHHHhCCCcEEEE----CCC--HHHH----HHHH-HcC
Confidence 3457799999888422 2456678888886653333333221 2346688 563 4444 3345 479
Q ss_pred CCEEEeCCCCCchHHHHHHHHHcCCceee-cc
Q 026125 185 MDAIKLEGGSPSRITAARGIVEAGIAVMG-HV 215 (243)
Q Consensus 185 AdaVKLEGg~~~~~~~i~~L~~~GIPV~G-Hi 215 (243)
||.|+==.|.. .+...+.+.+.|.|||= |.
T Consensus 97 adiINDVsg~~-d~~~~~vva~~~~~vVlmH~ 127 (279)
T PRK13753 97 VGYLNDIQGFP-DPALYPDIAEADCRLVVMHS 127 (279)
T ss_pred CCEEEeCCCCC-chHHHHHHHHcCCCEEEEec
Confidence 99998544433 35555667788888764 64
No 233
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=83.77 E-value=13 Score=33.19 Aligned_cols=94 Identities=19% Similarity=0.268 Sum_probs=60.7
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 79 ~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
..+.+.++.. ..+.|.-++++|...|.-+++.|.|-|.+|-=..... .++..+..++- .+.+++..+.|++..
T Consensus 92 ~~~~~ar~~~-~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~t--K~~~~~~G~~~----l~~~~~~~~iP~vAI 164 (211)
T COG0352 92 MPLAEARELL-GPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTST--KPDAPPLGLEG----LREIRELVNIPVVAI 164 (211)
T ss_pred cchHHHHHhc-CCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCC--CCCCCccCHHH----HHHHHHhCCCCEEEE
Confidence 4466677764 6677999999999999999999999999993222211 12223444443 334666666774442
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
|+- |++++ .+++ ++||++|=.
T Consensus 165 ----GGi--~~~nv----~~v~-~~Ga~gVAv 185 (211)
T COG0352 165 ----GGI--NLENV----PEVL-EAGADGVAV 185 (211)
T ss_pred ----cCC--CHHHH----HHHH-HhCCCeEEe
Confidence 233 55555 5566 699998865
No 234
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=83.63 E-value=15 Score=35.26 Aligned_cols=94 Identities=22% Similarity=0.258 Sum_probs=61.1
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
|+..-+.+.++|=....+++-|...|+.++++|+-++.- |.-+| .-.| ++-.+.+ +.+++..+.| |++
T Consensus 186 ~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIG-sg~g------v~~p~~i---~~~~e~~~vp-Viv 254 (326)
T PRK11840 186 TLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIG-SGLG------IQNPYTI---RLIVEGATVP-VLV 254 (326)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeecccccc-CCCC------CCCHHHH---HHHHHcCCCc-EEE
Confidence 555556665555444477889999999999999966654 54444 2233 3323333 4454555555 778
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
|=.- .+++++ .+.| |.|||+|-+--+
T Consensus 255 dAGI----g~~sda----~~Am-elGadgVL~nSa 280 (326)
T PRK11840 255 DAGV----GTASDA----AVAM-ELGCDGVLMNTA 280 (326)
T ss_pred eCCC----CCHHHH----HHHH-HcCCCEEEEcce
Confidence 8544 367777 5567 699999988655
No 235
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=83.55 E-value=2.6 Score=40.66 Aligned_cols=96 Identities=13% Similarity=0.185 Sum_probs=59.2
Q ss_pred CCHHHHHHHHH--cCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHH
Q 026125 100 YDYPSAVHLDS--AGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAV 177 (243)
Q Consensus 100 YD~~sA~iae~--AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~ 177 (243)
-|+..+...-+ +|+|.|.+- +.+||.. -++...+.|++..|+.+||+. .- .++|.+ .
T Consensus 108 ~d~er~~~L~~~~~g~D~iviD-----~AhGhs~-------~~i~~ik~ik~~~P~~~vIaG----NV-~T~e~a----~ 166 (346)
T PRK05096 108 ADFEKTKQILALSPALNFICID-----VANGYSE-------HFVQFVAKAREAWPDKTICAG----NV-VTGEMV----E 166 (346)
T ss_pred HHHHHHHHHHhcCCCCCEEEEE-----CCCCcHH-------HHHHHHHHHHHhCCCCcEEEe----cc-cCHHHH----H
Confidence 34444444444 799999874 2355543 456667788888888888753 44 566766 4
Q ss_pred HHHHHhCCCEEEeCCCCCc-----------------hHHHHHHHHHcCCceeeccCC
Q 026125 178 RILKEGGMDAIKLEGGSPS-----------------RITAARGIVEAGIAVMGHVGL 217 (243)
Q Consensus 178 Rl~keaGAdaVKLEGg~~~-----------------~~~~i~~L~~~GIPV~GHiGL 217 (243)
.|+ ++|||+||+==|... +.+..++..+.|+||++-=|.
T Consensus 167 ~Li-~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi 222 (346)
T PRK05096 167 ELI-LSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGC 222 (346)
T ss_pred HHH-HcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCc
Confidence 566 699999996433211 112234445668888876554
No 236
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=83.52 E-value=2.4 Score=37.68 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=34.1
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
.|+.+.++|.|.|+||.|. .+|.+.|..-++++++.++.|.++
T Consensus 16 ia~~v~~~gtDaI~VGGS~-----------gvt~~~~~~~v~~ik~~~~lPvil 58 (205)
T TIGR01769 16 IAKNAKDAGTDAIMVGGSL-----------GIVESNLDQTVKKIKKITNLPVIL 58 (205)
T ss_pred HHHHHHhcCCCEEEEcCcC-----------CCCHHHHHHHHHHHHhhcCCCEEE
Confidence 4567889999999999664 458888888889999877777543
No 237
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=83.48 E-value=34 Score=32.00 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=84.6
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 026125 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 79 ~tv~~-Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~ 152 (243)
+|..+ |++.++++--+-..++||+.+++ .||+.+.++||- ..+. . ....++.+...++..++.++
T Consensus 4 v~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~-~--------~~~~~~~~~~~~~~~a~~~~ 74 (286)
T PRK12738 4 ISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGT-F--------KHIALEEIYALCSAYSTTYN 74 (286)
T ss_pred CcHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcch-h--------hhCCHHHHHHHHHHHHHHCC
Confidence 34444 45567788899999999999986 468889999973 2211 1 12446667777788888887
Q ss_pred CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCccc
Q 026125 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQ 220 (243)
Q Consensus 153 ~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ 220 (243)
-| |..-|..+. +.+.+ .+.+ ++|...|.+.|+..- +..+++..-..||+|=|=||-++.
T Consensus 75 VP-ValHLDHg~---~~e~i----~~ai-~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg 140 (286)
T PRK12738 75 MP-LALHLDHHE---SLDDI----RRKV-HAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGG 140 (286)
T ss_pred CC-EEEECCCCC---CHHHH----HHHH-HcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCC
Confidence 77 677887732 44544 4556 489999999888432 234455555679999776666653
No 238
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=83.30 E-value=7 Score=35.53 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=51.0
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
++.+.++|+|.|.+.|++|. .+-+++-...+++++..+.. .+.| -++.+.--++.|+...+ ++|
T Consensus 157 ~~~~~~~g~~~i~l~DT~G~----------~~P~~v~~lv~~l~~~~~~~----~l~~-H~Hnd~Gla~An~laA~-~aG 220 (273)
T cd07941 157 LKAAAEAGADWLVLCDTNGG----------TLPHEIAEIVKEVRERLPGV----PLGI-HAHNDSGLAVANSLAAV-EAG 220 (273)
T ss_pred HHHHHhCCCCEEEEecCCCC----------CCHHHHHHHHHHHHHhCCCC----eeEE-EecCCCCcHHHHHHHHH-HcC
Confidence 34557889999999999874 46677777778888876631 1233 23467788999999999 489
Q ss_pred CCEEE
Q 026125 185 MDAIK 189 (243)
Q Consensus 185 AdaVK 189 (243)
|+-|-
T Consensus 221 a~~id 225 (273)
T cd07941 221 ATQVQ 225 (273)
T ss_pred CCEEE
Confidence 99876
No 239
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=83.22 E-value=20 Score=32.78 Aligned_cols=115 Identities=22% Similarity=0.171 Sum_probs=68.9
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhh----hhccCCCCccCCHHHHHHHHHHHHcccC-CCc-E------Ee
Q 026125 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAM----VVHGHDTTLPITLEEMLVHCRAVARGAK-RPL-L------VG 158 (243)
Q Consensus 91 g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgm----v~lG~~dT~~vTldeMi~h~~aV~Rga~-~~f-v------Va 158 (243)
+-+++.+. -..--...+-++|+|.|-+.++++- ..++ .+.++.+..+....+.++ .-+ + ..
T Consensus 66 ~~~~~~~~-~~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~------~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f 138 (274)
T cd07938 66 GVRYSALV-PNLRGAERALAAGVDEVAVFVSASETFSQKNIN------CSIAESLERFEPVAELAKAAGLRVRGYVSTAF 138 (274)
T ss_pred CCEEEEEC-CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHcC------CCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEe
Confidence 45566664 3555577788899998866655542 2222 344554444333222221 111 2 25
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc--CCceeec
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA--GIAVMGH 214 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~--GIPV~GH 214 (243)
+-||.+. .+++..++.+.++. +.||+.|.|.|... ....+++.|.+. ++|+-=|
T Consensus 139 ~~~~~~~-~~~~~~~~~~~~~~-~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H 199 (274)
T cd07938 139 GCPYEGE-VPPERVAEVAERLL-DLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALH 199 (274)
T ss_pred cCCCCCC-CCHHHHHHHHHHHH-HcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 6677666 57888887777766 69999999998733 344566777665 3665555
No 240
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=83.12 E-value=6.8 Score=35.44 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=52.8
Q ss_pred hhhCCCcEEEE-ec-CC----HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 87 KHKNGEPITMV-TA-YD----YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 87 ~kk~g~~Itml-TA-YD----~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
.++.+.|+++= .. ++ ...|+.++++|+|.|-| | .+|+....+. +...+.|++..+..+||+.
T Consensus 130 v~~~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~V-d------~~~~g~~~a~----~~~I~~i~~~~~~ipIIgN- 197 (231)
T TIGR00736 130 MKELNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHV-D------AMYPGKPYAD----MDLLKILSEEFNDKIIIGN- 197 (231)
T ss_pred HHcCCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEE-e------eCCCCCchhh----HHHHHHHHHhcCCCcEEEE-
Confidence 33345676653 33 32 27889999999999977 3 1343322233 3445667777653346765
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
|+- .|.+++ .++++ .|||+|.+-
T Consensus 198 --GgI-~s~eda----~e~l~-~GAd~Vmvg 220 (231)
T TIGR00736 198 --NSI-DDIESA----KEMLK-AGADFVSVA 220 (231)
T ss_pred --CCc-CCHHHH----HHHHH-hCCCeEEEc
Confidence 344 477888 56774 899999884
No 241
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=83.10 E-value=19 Score=31.00 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=60.2
Q ss_pred cCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHH
Q 026125 99 AYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVR 178 (243)
Q Consensus 99 AYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~R 178 (243)
.-|...|..+.++|. +|+=++..++.++.....+.+++-.+.++ .+.+-+...+...++- .+
T Consensus 13 ~~~~~~~~~~~~~G~-------------ig~i~~~~~~~~~~~~~~~~i~~~~~~~~-~v~~i~~~~~~~~~~~----~~ 74 (236)
T cd04730 13 VSTPELAAAVSNAGG-------------LGFIGAGYLTPEALRAEIRKIRALTDKPF-GVNLLVPSSNPDFEAL----LE 74 (236)
T ss_pred CCCHHHHHHHHhCCC-------------ccccCCCCCCHHHHHHHHHHHHHhcCCCe-EEeEecCCCCcCHHHH----HH
Confidence 358888888888872 12224556688888888888876443342 2333222110123333 34
Q ss_pred HHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeec
Q 026125 179 ILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 179 l~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GH 214 (243)
.+++.|+|+|.+-++. ...+++.+.+.++++..-
T Consensus 75 ~~~~~g~d~v~l~~~~--~~~~~~~~~~~~i~~i~~ 108 (236)
T cd04730 75 VALEEGVPVVSFSFGP--PAEVVERLKAAGIKVIPT 108 (236)
T ss_pred HHHhCCCCEEEEcCCC--CHHHHHHHHHcCCEEEEe
Confidence 4557899999997773 356678888889998653
No 242
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=83.02 E-value=30 Score=31.49 Aligned_cols=111 Identities=13% Similarity=0.165 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCC---------------CccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCc
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDT---------------TLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYE 166 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~d---------------T~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~ 166 (243)
...++.++++|+.++.+|--.----.|+|. .....+|+.+.+.+...+..+.| +++.+ + ++
T Consensus 26 ~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~p-~i~si-~-g~- 101 (301)
T PRK07259 26 GEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLEEFDTP-IIANV-A-GS- 101 (301)
T ss_pred HHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHhccCCc-EEEEe-c-cC-
Confidence 345555677888888777321112233332 11234566666555544444555 56665 1 23
Q ss_pred CCHHHHHHHHHHHHHHhC-CCEEEe-------CC-CC------CchHHHHHHHHHc-CCceeeccCCc
Q 026125 167 SSTNQAVDTAVRILKEGG-MDAIKL-------EG-GS------PSRITAARGIVEA-GIAVMGHVGLT 218 (243)
Q Consensus 167 ~s~e~Av~nA~Rl~keaG-AdaVKL-------EG-g~------~~~~~~i~~L~~~-GIPV~GHiGLt 218 (243)
++++-.+.|.++ +++| +|+|-| ++ |. +...++++++.++ .+||.-.++.+
T Consensus 102 -~~~~~~~~a~~~-~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~ 167 (301)
T PRK07259 102 -TEEEYAEVAEKL-SKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPN 167 (301)
T ss_pred -CHHHHHHHHHHH-hccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 678887777765 5688 999977 44 31 2245667777776 79999888754
No 243
>PRK05269 transaldolase B; Provisional
Probab=82.71 E-value=34 Score=32.46 Aligned_cols=116 Identities=12% Similarity=0.144 Sum_probs=73.0
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE--EeCcchhhhh------ccCCCCccCCHHHHHHHHHHHHc-cc
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC--LVGDSAAMVV------HGHDTTLPITLEEMLVHCRAVAR-GA 151 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI--LVGDSlgmv~------lG~~dT~~vTldeMi~h~~aV~R-ga 151 (243)
+.-.+.+.++|-++-+-.+|+...|.++.+||++.| .|| -+--.. .+++......+.-+....+..++ +.
T Consensus 140 i~A~~~L~~~GI~vn~TlvFs~~Qa~~aa~AGa~~ISPfVg-Ri~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~ 218 (318)
T PRK05269 140 IRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFVG-RILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGY 218 (318)
T ss_pred HHHHHHHHHcCCceeEeEecCHHHHHHHHHcCCCEEEeecc-HHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCC
Confidence 556677888999999999999999999999999998 477 221110 11211111222222222222322 45
Q ss_pred CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccC
Q 026125 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG 216 (243)
Q Consensus 152 ~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiG 216 (243)
+..++.+ || .|+++..+ -+|+|.+-+- +.+.+.|.+.+-||--++.
T Consensus 219 ~t~im~A-----Sf-rn~~~v~~-------laG~d~vTi~------p~ll~~l~~~~~~~~~~l~ 264 (318)
T PRK05269 219 KTVVMGA-----SF-RNTGQILE-------LAGCDRLTIS------PALLEELAASEGELERKLS 264 (318)
T ss_pred CceEEee-----cc-CCHHHHHH-------HhCCCeEECC------HHHHHHHHhcCCCccccCC
Confidence 5553333 78 48888753 3699999664 5667889988888865553
No 244
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=82.45 E-value=13 Score=33.19 Aligned_cols=101 Identities=23% Similarity=0.324 Sum_probs=54.6
Q ss_pred HHHHHHcCCCEEEeC----cchhh--hhc--c-CCCCccCCHHHHHHHHHHHHcccCCCcEE-ee-CCCCCCcCCHHHHH
Q 026125 105 AVHLDSAGIDICLVG----DSAAM--VVH--G-HDTTLPITLEEMLVHCRAVARGAKRPLLV-GD-LPFGTYESSTNQAV 173 (243)
Q Consensus 105 A~iae~AGiDiILVG----DSlgm--v~l--G-~~dT~~vTldeMi~h~~aV~Rga~~~fvV-aD-mPfgsY~~s~e~Av 173 (243)
++..+++|+|+|=+| |.++= ++. . ..=-..++++.....++.|++-.+.|+++ +- =|+-+| ..++-
T Consensus 20 ~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~--G~~~f- 96 (242)
T cd04724 20 LKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY--GLERF- 96 (242)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh--CHHHH-
Confidence 556777888888776 22110 000 0 00012244567777888888766666322 11 111112 12444
Q ss_pred HHHHHHHHHhCCCEEEeCCC-CCchHHHHHHHHHcCCce
Q 026125 174 DTAVRILKEGGMDAIKLEGG-SPSRITAARGIVEAGIAV 211 (243)
Q Consensus 174 ~nA~Rl~keaGAdaVKLEGg-~~~~~~~i~~L~~~GIPV 211 (243)
.+.++++|+++|-+-|= .++...+++.+.+.|+..
T Consensus 97 ---i~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~ 132 (242)
T cd04724 97 ---LRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDL 132 (242)
T ss_pred ---HHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcE
Confidence 45566899999988442 223446677788888744
No 245
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=82.38 E-value=32 Score=30.96 Aligned_cols=90 Identities=20% Similarity=0.193 Sum_probs=53.7
Q ss_pred HHHHHHHHcCCCEEEeCc-chhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGD-SAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGD-Slgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
..+..+++.|++.+++-| +--....|+ | +...+.+++..+.|++. - |+. .|.++. .++++
T Consensus 156 e~~~~~~~~g~~~ii~~~i~~~G~~~G~-d---------~~~i~~~~~~~~ipvIa-s---GGv-~s~eD~----~~l~~ 216 (258)
T PRK01033 156 ELAKEYEALGAGEILLNSIDRDGTMKGY-D---------LELLKSFRNALKIPLIA-L---GGA-GSLDDI----VEAIL 216 (258)
T ss_pred HHHHHHHHcCCCEEEEEccCCCCCcCCC-C---------HHHHHHHHhhCCCCEEE-e---CCC-CCHHHH----HHHHH
Confidence 456778899999776543 322334553 2 33445677777778544 3 345 477777 45665
Q ss_pred HhCCCEEEeCCCCC------------chHHHHHHHHHcCCce
Q 026125 182 EGGMDAIKLEGGSP------------SRITAARGIVEAGIAV 211 (243)
Q Consensus 182 eaGAdaVKLEGg~~------------~~~~~i~~L~~~GIPV 211 (243)
+.|+++|-+--.-. ....+-..|.+.||||
T Consensus 217 ~~GvdgVivg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (258)
T PRK01033 217 NLGADAAAAGSLFVFKGVYKAVLINYPNGDEKEELLKAGIPV 258 (258)
T ss_pred HCCCCEEEEcceeeeCcccccccccccHHHHHHHHHHcCCCC
Confidence 68999886522211 1234456677788775
No 246
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=82.35 E-value=3.3 Score=39.08 Aligned_cols=72 Identities=22% Similarity=0.266 Sum_probs=54.5
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
..|+.++++|+|.|.+-||.|. .+-+++-...+++++..+.. ..+.|-+. .|.--++.|+...+ +
T Consensus 147 ~~a~~~~~~Ga~~i~i~DT~G~----------~~P~~v~~~v~~l~~~l~~~---i~ig~H~H-nnlGla~ANslaAi-~ 211 (333)
T TIGR03217 147 EQAKLMESYGADCVYIVDSAGA----------MLPDDVRDRVRALKAVLKPE---TQVGFHAH-HNLSLAVANSIAAI-E 211 (333)
T ss_pred HHHHHHHhcCCCEEEEccCCCC----------CCHHHHHHHHHHHHHhCCCC---ceEEEEeC-CCCchHHHHHHHHH-H
Confidence 3456778899999999999865 67788888888998877521 12345344 68888999999999 5
Q ss_pred hCCCEEE
Q 026125 183 GGMDAIK 189 (243)
Q Consensus 183 aGAdaVK 189 (243)
+||+-|-
T Consensus 212 aGa~~iD 218 (333)
T TIGR03217 212 AGATRID 218 (333)
T ss_pred hCCCEEE
Confidence 8999754
No 247
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=82.34 E-value=2.1 Score=37.22 Aligned_cols=71 Identities=30% Similarity=0.345 Sum_probs=47.2
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHh
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~kea 183 (243)
.++.+.++|+|.|.+-|++|. .+-+++-+..+.+++..+.. .+.|-. +.+.--|+.|+...+ ++
T Consensus 142 ~~~~~~~~g~~~i~l~Dt~G~----------~~P~~v~~lv~~~~~~~~~~----~l~~H~-Hnd~Gla~An~laA~-~a 205 (237)
T PF00682_consen 142 LAEALAEAGADIIYLADTVGI----------MTPEDVAELVRALREALPDI----PLGFHA-HNDLGLAVANALAAL-EA 205 (237)
T ss_dssp HHHHHHHHT-SEEEEEETTS-----------S-HHHHHHHHHHHHHHSTTS----EEEEEE-BBTTS-HHHHHHHHH-HT
T ss_pred HHHHHHHcCCeEEEeeCccCC----------cCHHHHHHHHHHHHHhccCC----eEEEEe-cCCccchhHHHHHHH-Hc
Confidence 466777889999999988866 45667777778888887752 223322 356667888888888 48
Q ss_pred CCCEEEe
Q 026125 184 GMDAIKL 190 (243)
Q Consensus 184 GAdaVKL 190 (243)
||+-|-.
T Consensus 206 Ga~~id~ 212 (237)
T PF00682_consen 206 GADRIDG 212 (237)
T ss_dssp T-SEEEE
T ss_pred CCCEEEc
Confidence 9998744
No 248
>PRK07695 transcriptional regulator TenI; Provisional
Probab=82.32 E-value=26 Score=29.99 Aligned_cols=95 Identities=18% Similarity=0.253 Sum_probs=56.8
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
.+.++++.. +..++.+++++...+..++++|+|.|..|--..... .+...+..++. .+.+++..+.|++..
T Consensus 85 ~~~~~r~~~--~~~~ig~s~~s~e~a~~a~~~Gadyi~~g~v~~t~~--k~~~~~~g~~~----l~~~~~~~~ipvia~- 155 (201)
T PRK07695 85 SVRSVREKF--PYLHVGYSVHSLEEAIQAEKNGADYVVYGHVFPTDC--KKGVPARGLEE----LSDIARALSIPVIAI- 155 (201)
T ss_pred CHHHHHHhC--CCCEEEEeCCCHHHHHHHHHcCCCEEEECCCCCCCC--CCCCCCCCHHH----HHHHHHhCCCCEEEE-
Confidence 455666643 345677799999999999999999997663111110 11112233332 345555566775543
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
|+- +++++ ..++ +.|+++|-+-++
T Consensus 156 ---GGI--~~~~~----~~~~-~~Ga~gvav~s~ 179 (201)
T PRK07695 156 ---GGI--TPENT----RDVL-AAGVSGIAVMSG 179 (201)
T ss_pred ---cCC--CHHHH----HHHH-HcCCCEEEEEHH
Confidence 344 55554 5566 489999976443
No 249
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=82.30 E-value=12 Score=35.79 Aligned_cols=94 Identities=21% Similarity=0.195 Sum_probs=52.7
Q ss_pred HHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 103 ~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
..|+.++++|+|.|-| +.+.......++.. ...-......++.|++..+.|+++. |.+ .+++++ -+.++
T Consensus 256 ~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~-~~~~~~~~~~~~~ik~~~~~pvi~~----G~i-~~~~~~----~~~l~ 325 (382)
T cd02931 256 KAAKILEEAGYDALDVDAGSYDAWYWNHPPM-YQKKGMYLPYCKALKEVVDVPVIMA----GRM-EDPELA----SEAIN 325 (382)
T ss_pred HHHHHHHHhCCCEEEeCCCCCcccccccCCc-cCCcchhHHHHHHHHHHCCCCEEEe----CCC-CCHHHH----HHHHH
Confidence 3567888999999954 32221111111211 0010112456677888887775542 244 366666 66787
Q ss_pred HhCCCEEEeCCCCCchHHHHHHHHH
Q 026125 182 EGGMDAIKLEGGSPSRITAARGIVE 206 (243)
Q Consensus 182 eaGAdaVKLEGg~~~~~~~i~~L~~ 206 (243)
+++||.|-+--+.-..+++++.+.+
T Consensus 326 ~g~~D~V~~gR~~ladP~l~~k~~~ 350 (382)
T cd02931 326 EGIADMISLGRPLLADPDVVNKIRR 350 (382)
T ss_pred cCCCCeeeechHhHhCccHHHHHHc
Confidence 7889999885543333455565544
No 250
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=82.28 E-value=50 Score=32.11 Aligned_cols=136 Identities=9% Similarity=0.075 Sum_probs=83.9
Q ss_pred HHhhhCCCcEEEEecCCHHHHHH----HHHcCCCEEE-eCcchhhhhcc--CCC----C-ccCCHHHHHHHHHHHHcccC
Q 026125 85 RQKHKNGEPITMVTAYDYPSAVH----LDSAGIDICL-VGDSAAMVVHG--HDT----T-LPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 85 r~~kk~g~~ItmlTAYD~~sA~i----ae~AGiDiIL-VGDSlgmv~lG--~~d----T-~~vTldeMi~h~~aV~Rga~ 152 (243)
+..++++--+-..++|+..+++. ||+...++|| +.......+-| +++ . .-+....+...++.+++-++
T Consensus 20 ~~A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~ 99 (357)
T TIGR01520 20 QYAKENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYG 99 (357)
T ss_pred HHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCC
Confidence 34567888899999999999874 6888999887 43322111122 333 1 12334446677777877777
Q ss_pred CCcEEeeCCCC-CCc-CCHHHHHHHHHHHHHHhC---CCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCccc
Q 026125 153 RPLLVGDLPFG-TYE-SSTNQAVDTAVRILKEGG---MDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQ 220 (243)
Q Consensus 153 ~~fvVaDmPfg-sY~-~s~e~Av~nA~Rl~keaG---AdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ 220 (243)
-| |+.-|..+ +|+ .-.+++++.....+.++| ...|.+.|+..- +..+++..-..||.|=|=||-++.
T Consensus 100 VP-ValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG 178 (357)
T TIGR01520 100 VP-VVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLEIEIGITGG 178 (357)
T ss_pred CC-EEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 67 77888885 331 013444444333333455 999999888432 223344455569999888887764
Q ss_pred c
Q 026125 221 A 221 (243)
Q Consensus 221 ~ 221 (243)
.
T Consensus 179 ~ 179 (357)
T TIGR01520 179 E 179 (357)
T ss_pred c
Confidence 3
No 251
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=82.16 E-value=24 Score=32.12 Aligned_cols=115 Identities=10% Similarity=0.018 Sum_probs=65.1
Q ss_pred CcEEEEecCCHHHHHHHHHcCCCEEEeCcchh----hhhccCCCCccCCHHHHHHHHHHHHccc-CC-CcEEeeCCCCCC
Q 026125 92 EPITMVTAYDYPSAVHLDSAGIDICLVGDSAA----MVVHGHDTTLPITLEEMLVHCRAVARGA-KR-PLLVGDLPFGTY 165 (243)
Q Consensus 92 ~~ItmlTAYD~~sA~iae~AGiDiILVGDSlg----mv~lG~~dT~~vTldeMi~h~~aV~Rga-~~-~fvVaDmPfgsY 165 (243)
..+......+..-...+.++|+|.|-+-.+++ -..+| -+.+|.+..++.+.+-+ .. -.+...+.- ++
T Consensus 64 ~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~------~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed-a~ 136 (262)
T cd07948 64 AKILTHIRCHMDDARIAVETGVDGVDLVFGTSPFLREASHG------KSITEIIESAVEVIEFVKSKGIEVRFSSED-SF 136 (262)
T ss_pred CcEEEEecCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhC------CCHHHHHHHHHHHHHHHHHCCCeEEEEEEe-eC
Confidence 44555556677778888999999885433332 12222 45666554443322221 11 123344443 45
Q ss_pred cCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 166 ESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 166 ~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
..+++..++.+.++. +.|++.|.|-|... .+..+++.|.+. ++|+--|
T Consensus 137 r~~~~~l~~~~~~~~-~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~i~~H 190 (262)
T cd07948 137 RSDLVDLLRVYRAVD-KLGVNRVGIADTVGIATPRQVYELVRTLRGVVSCDIEFH 190 (262)
T ss_pred CCCHHHHHHHHHHHH-HcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 456677666655554 78999999998732 234455655553 4665544
No 252
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=82.10 E-value=37 Score=30.72 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC--------------CCCchHHHH
Q 026125 136 TLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG--------------GSPSRITAA 201 (243)
Q Consensus 136 TldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEG--------------g~~~~~~~i 201 (243)
.+++.+.+.+..++-.+.| +++.+ + ..++++..+.|.++ +++|+|+|-|-- ..+....++
T Consensus 73 g~~~~~~~~~~~~~~~~~p-~ivsi-~---g~~~~~~~~~a~~~-~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv 146 (296)
T cd04740 73 GVEAFLEELLPWLREFGTP-VIASI-A---GSTVEEFVEVAEKL-ADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIV 146 (296)
T ss_pred CHHHHHHHHHHHhhcCCCc-EEEEE-e---cCCHHHHHHHHHHH-HHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHH
Confidence 4577777666655544455 55555 1 13567776666555 578999997721 112244567
Q ss_pred HHHHHc-CCceeeccC
Q 026125 202 RGIVEA-GIAVMGHVG 216 (243)
Q Consensus 202 ~~L~~~-GIPV~GHiG 216 (243)
+++.++ ++||.--++
T Consensus 147 ~~vr~~~~~Pv~vKl~ 162 (296)
T cd04740 147 KAVKKATDVPVIVKLT 162 (296)
T ss_pred HHHHhccCCCEEEEeC
Confidence 888877 899986654
No 253
>PRK06498 isocitrate lyase; Provisional
Probab=82.06 E-value=2.2 Score=43.07 Aligned_cols=112 Identities=18% Similarity=0.196 Sum_probs=67.5
Q ss_pred CHHHHHHhhhC-----CCcEEEEecCCHHHHHHHHHc---CC-----CEE-EeCcchhhhh--cc-CCCC-------ccC
Q 026125 80 TLTHLRQKHKN-----GEPITMVTAYDYPSAVHLDSA---GI-----DIC-LVGDSAAMVV--HG-HDTT-------LPI 135 (243)
Q Consensus 80 tv~~Lr~~kk~-----g~~ItmlTAYD~~sA~iae~A---Gi-----DiI-LVGDSlgmv~--lG-~~dT-------~~v 135 (243)
+-..+++.... ....--++||+...|.---.+ |+ ..| |.|=-++... .| |||- .|-
T Consensus 49 ~a~~~~~~m~~yd~d~~~y~~slGa~~g~~a~Q~~~a~k~~~~~t~~~~iYlSGW~vAa~~n~~g~~PDqS~yp~~sVP~ 128 (531)
T PRK06498 49 TAKIMRADMAAYDADSSKYTQSLGCWHGFIAQQKMISIKKHFGTTKRRYLYLSGWMVAALRSEFGPLPDQSMHEKTSVPA 128 (531)
T ss_pred HHHHHHHHHHhhcccchhhhhhhcCCcHHHHHHHHHHHHhccCCCccceEEehhhHHHhhhhccCCCCCcccCccccHHH
Confidence 44446665555 456778899999999888888 88 877 5554333311 22 4543 222
Q ss_pred CHHHHHHH---HHHH-----------Hc--cc-----------C-----CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHh
Q 026125 136 TLEEMLVH---CRAV-----------AR--GA-----------K-----RPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 136 TldeMi~h---~~aV-----------~R--ga-----------~-----~~fvVaDmPfgsY~~s~e~Av~nA~Rl~kea 183 (243)
-.+++-.. +-+| .+ |. + ...||+|..- +| .++..+.+.+.+++ ++
T Consensus 129 lv~~i~~~l~~AD~~~~~~lf~~~~~a~~~g~~~~~~~~~~~~d~~~~~~iPIIADaDt-Gf-G~~~nv~r~vk~~i-eA 205 (531)
T PRK06498 129 LIEELYTFLRQADARELNDLFRELDAAREAGDKAKEAAIQAKIDNFETHVVPIIADIDA-GF-GNEEATYLLAKKMI-EA 205 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhhccccccccccceEEEcCC-CC-CcHHHHHHHHHHHH-Hh
Confidence 23332111 0000 11 21 1 1246777766 67 47888888887776 69
Q ss_pred CCCEEEeCCCC
Q 026125 184 GMDAIKLEGGS 194 (243)
Q Consensus 184 GAdaVKLEGg~ 194 (243)
||.+|.|||-.
T Consensus 206 GAAgIhIEDQv 216 (531)
T PRK06498 206 GACCIQIENQV 216 (531)
T ss_pred CCeEEEEecCC
Confidence 99999999963
No 254
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=82.03 E-value=18 Score=32.35 Aligned_cols=125 Identities=14% Similarity=0.164 Sum_probs=69.1
Q ss_pred HHHhhhCCCc-EEEEecCCHHH----HHHHHHcCCCEE-E-eCcchhh-hhccCCCCccCCHHHHHHHHHHHHcccCCCc
Q 026125 84 LRQKHKNGEP-ITMVTAYDYPS----AVHLDSAGIDIC-L-VGDSAAM-VVHGHDTTLPITLEEMLVHCRAVARGAKRPL 155 (243)
Q Consensus 84 Lr~~kk~g~~-ItmlTAYD~~s----A~iae~AGiDiI-L-VGDSlgm-v~lG~~dT~~vTldeMi~h~~aV~Rga~~~f 155 (243)
++.+++.+.| ++-+...|... |+.+++ ++|+| + .|=.... +-.|.-..+.-..|.+.+.+++|++ ++.|
T Consensus 65 ~~~~~~~~~p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~p- 141 (233)
T cd02911 65 IKALKDSNVLVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVP- 141 (233)
T ss_pred HHHhhccCCeEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCC-
Confidence 3334333434 34445555543 344445 45877 3 4533322 2334444444456777788888887 5666
Q ss_pred EEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc---hHHHHHHHHHcCCceeeccCC
Q 026125 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS---RITAARGIVEAGIAVMGHVGL 217 (243)
Q Consensus 156 vVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~---~~~~i~~L~~~GIPV~GHiGL 217 (243)
|.+=+.- ++ + ++.++.|.+ ++++|+|++++..+... ....|+.+. .+|||+|==|+
T Consensus 142 VsvKir~-g~--~-~~~~~la~~-l~~aG~d~ihv~~~~~g~~ad~~~I~~i~-~~ipVIgnGgI 200 (233)
T cd02911 142 VSVKIRA-GV--D-VDDEELARL-IEKAGADIIHVDAMDPGNHADLKKIRDIS-TELFIIGNNSV 200 (233)
T ss_pred EEEEEcC-Cc--C-cCHHHHHHH-HHHhCCCEEEECcCCCCCCCcHHHHHHhc-CCCEEEEECCc
Confidence 4444433 23 2 455555544 55799999999876431 224455554 57999985443
No 255
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=82.02 E-value=28 Score=32.86 Aligned_cols=89 Identities=15% Similarity=0.197 Sum_probs=58.0
Q ss_pred CcEEEEecCCHHHHHHHHHcCCCEEEe-C--cchh---------------hhhccCCCCc--------cCCHHHHHHHHH
Q 026125 92 EPITMVTAYDYPSAVHLDSAGIDICLV-G--DSAA---------------MVVHGHDTTL--------PITLEEMLVHCR 145 (243)
Q Consensus 92 ~~ItmlTAYD~~sA~iae~AGiDiILV-G--DSlg---------------mv~lG~~dT~--------~vTldeMi~h~~ 145 (243)
..+.|--|-+...|..+.++|+|+|-+ + ..=. -...||.+.. ...++. .+
T Consensus 112 ~~l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~el----Lk 187 (283)
T cd04727 112 KVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYEL----VK 187 (283)
T ss_pred CCcEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHH----HH
Confidence 688999999999999999999999942 2 1111 0235553332 244443 34
Q ss_pred HHHcccCCCcE-EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 146 AVARGAKRPLL-VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 146 aV~Rga~~~fv-VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
.+++..+.|++ ++. |+. .+++++ .+++ +.||++|-+=.+
T Consensus 188 ~l~~~~~iPVV~iAe---GGI-~Tpena----~~v~-e~GAdgVaVGSA 227 (283)
T cd04727 188 ETAKLGRLPVVNFAA---GGV-ATPADA----ALMM-QLGADGVFVGSG 227 (283)
T ss_pred HHHHhcCCCeEEEEe---CCC-CCHHHH----HHHH-HcCCCEEEEcHH
Confidence 45555667754 354 345 378887 5666 589999988554
No 256
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=81.91 E-value=37 Score=30.25 Aligned_cols=110 Identities=19% Similarity=0.243 Sum_probs=73.9
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHH----HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 82 THLRQKHKNGEPITMVTAYDYPSA----VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 82 ~~Lr~~kk~g~~ItmlTAYD~~sA----~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
..+.++..+..-+.++...|...| +.+.+.|+++|=++-. .+ +=+...+.+++..|+..|-
T Consensus 6 ~~~~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~-----------~~----~~~~~I~~l~~~~p~~~IG 70 (212)
T PRK05718 6 TSIEEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLR-----------TP----AALEAIRLIAKEVPEALIG 70 (212)
T ss_pred HHHHHHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecC-----------Cc----cHHHHHHHHHHHCCCCEEE
Confidence 345555567778889999887765 4556779999966611 11 2233445566666776666
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCcee-eccCCcccc
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVM-GHVGLTPQA 221 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~-GHiGLtPQ~ 221 (243)
+|+ - .+++++ .+.+ ++||+-+---+-. +++++...+.|||.+ |- +||..
T Consensus 71 AGT----V-l~~~~a----~~a~-~aGA~FivsP~~~---~~vi~~a~~~~i~~iPG~--~TptE 120 (212)
T PRK05718 71 AGT----V-LNPEQL----AQAI-EAGAQFIVSPGLT---PPLLKAAQEGPIPLIPGV--STPSE 120 (212)
T ss_pred Eee----c-cCHHHH----HHHH-HcCCCEEECCCCC---HHHHHHHHHcCCCEeCCC--CCHHH
Confidence 775 3 366665 3444 7999999877664 467899999999999 74 56643
No 257
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=81.91 E-value=6.6 Score=37.12 Aligned_cols=114 Identities=14% Similarity=0.074 Sum_probs=66.2
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE--EeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE-eeC
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC--LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDL 160 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI--LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV-aDm 160 (243)
|.+|.|+| +++-+-+...|+++|++|+|.+ ++|=..--+--| +-.-+.+ ..+.++|++.++.|.+. .=.
T Consensus 12 ~a~m~kgg---vimdv~~~~~a~iae~~g~~~v~~~~~~psd~~~~g----g~~Rm~~-p~~I~aIk~~V~iPVigk~Ri 83 (293)
T PRK04180 12 FAEMLKGG---VIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAG----GVARMAD-PKMIEEIMDAVSIPVMAKARI 83 (293)
T ss_pred HHHHhcCC---eEEEeCCHHHHHHHHHhChHHHHHccCCCchHhhcC----CeeecCC-HHHHHHHHHhCCCCeEEeehh
Confidence 67787777 6677788999999999999965 454222222223 1111111 34456888888888433 232
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc---hHHHHHHHHHc-CCceeeccCCcc
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS---RITAARGIVEA-GIAVMGHVGLTP 219 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~---~~~~i~~L~~~-GIPV~GHiGLtP 219 (243)
.| +..| +.+.+.|+|.| |..+. ..+++..+-.. ++|+|+-+.=..
T Consensus 84 gh----------~~Ea-~~L~~~GvDiI---D~Te~lrpad~~~~~~K~~f~~~fmad~~~l~ 132 (293)
T PRK04180 84 GH----------FVEA-QILEALGVDYI---DESEVLTPADEEYHIDKWDFTVPFVCGARNLG 132 (293)
T ss_pred hH----------HHHH-HHHHHcCCCEE---eccCCCCchHHHHHHHHHHcCCCEEccCCCHH
Confidence 22 2333 34557999999 33221 22334444443 899988654433
No 258
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=81.86 E-value=18 Score=33.56 Aligned_cols=101 Identities=25% Similarity=0.266 Sum_probs=69.6
Q ss_pred HHHHhhhCCCcEEEE--ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 83 HLRQKHKNGEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 83 ~Lr~~kk~g~~Itml--TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
.||+..++|++..-+ .--|..++.++..+|+|.+++-.- ..+.+.+.+++..+++.-....| |+=.
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~aGfDwl~iD~E----------Hapnd~~sl~~qL~a~~~~~~~p--vVR~ 74 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILATAGFDWLLIDGE----------HAPNDLQSLLHQLQAVAAYASPP--VVRP 74 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHHhcCCCEEEeccc----------ccCccHHHHHHHHHHhhccCCCC--eeeC
Confidence 477777888875433 446899999999999999987522 24667888889999997666666 4556
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE 206 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~ 206 (243)
|.|. +..+ .|++ ..||+.+-+-=-. ..++ .+.++.
T Consensus 75 p~g~----~~~I----kq~L-D~GAqtlliPmV~-s~eq-Ar~~V~ 109 (255)
T COG3836 75 PVGD----PVMI----KQLL-DIGAQTLLIPMVD-TAEQ-ARQAVA 109 (255)
T ss_pred CCCC----HHHH----HHHH-ccccceeeeeccC-CHHH-HHHHHH
Confidence 6633 3455 6788 6899999775332 2233 455554
No 259
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=81.85 E-value=36 Score=31.73 Aligned_cols=122 Identities=27% Similarity=0.322 Sum_probs=70.7
Q ss_pred HHHhhhC--CCcEEEEecCCH------HHHHHHHHcCCCEEEeCcchhhhhccCCC---------CccCCHHHHHHHHHH
Q 026125 84 LRQKHKN--GEPITMVTAYDY------PSAVHLDSAGIDICLVGDSAAMVVHGHDT---------TLPITLEEMLVHCRA 146 (243)
Q Consensus 84 Lr~~kk~--g~~ItmlTAYD~------~sA~iae~AGiDiILVGDSlgmv~lG~~d---------T~~vTldeMi~h~~a 146 (243)
|.+++.+ +-.|.-+|+=|. ..++.+.++|+|+|=.|-..+-=+.=-|. ...+|+++.++..+.
T Consensus 8 F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~ 87 (265)
T COG0159 8 FAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEE 87 (265)
T ss_pred HHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4444433 457888888662 23445579999999655332210000000 135789999999999
Q ss_pred HHc-ccCCCcEEeeCCCCCCcCCH--HHHHHHHHHHHHHhCCCEEEeCCCCC-chHHHHHHHHHcCCce
Q 026125 147 VAR-GAKRPLLVGDLPFGTYESST--NQAVDTAVRILKEGGMDAIKLEGGSP-SRITAARGIVEAGIAV 211 (243)
Q Consensus 147 V~R-ga~~~fvVaDmPfgsY~~s~--e~Av~nA~Rl~keaGAdaVKLEGg~~-~~~~~i~~L~~~GIPV 211 (243)
++. +.+.|+++ | +| .|+ ...++.=.+..+++|+|++-+-|=.. +...+.+...+.||-.
T Consensus 88 ~r~~~~~~Pivl--m---~Y-~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~ 150 (265)
T COG0159 88 IRAKGVKVPIVL--M---TY-YNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDP 150 (265)
T ss_pred HHhcCCCCCEEE--E---Ee-ccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcE
Confidence 984 45556433 2 33 233 23344435566789999999988753 3344455555566543
No 260
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=81.83 E-value=32 Score=32.06 Aligned_cols=110 Identities=17% Similarity=0.143 Sum_probs=68.7
Q ss_pred HHhhhCCCcEE---EEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC
Q 026125 85 RQKHKNGEPIT---MVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (243)
Q Consensus 85 r~~kk~g~~It---mlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP 161 (243)
.++..=.-||. |-.+-|...|..+-++|.=-++ | .| ..+.|++-...+.++..++.|| -+++.
T Consensus 5 ~~~lgi~~Pii~apM~~~s~~~la~avs~aGglG~l-~-------~~-----~~~~~~l~~~i~~~~~~t~~pf-gvn~~ 70 (307)
T TIGR03151 5 CDLLGIEYPIFQGGMAWVATGSLAAAVSNAGGLGII-G-------AG-----NAPPDVVRKEIRKVKELTDKPF-GVNIM 70 (307)
T ss_pred hHHhCCCCCEEcCCCCCCCCHHHHHHHHhCCCccee-c-------cc-----cCCHHHHHHHHHHHHHhcCCCc-EEeee
Confidence 33333445666 4467788888888888832111 1 11 1356777666677776666664 45544
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccC
Q 026125 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG 216 (243)
Q Consensus 162 fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiG 216 (243)
+.. ...++. .+++.+.|++.|-+-+|.. ..+++.|.+.|+.|+..++
T Consensus 71 ~~~--~~~~~~----~~~~~~~~v~~v~~~~g~p--~~~i~~lk~~g~~v~~~v~ 117 (307)
T TIGR03151 71 LLS--PFVDEL----VDLVIEEKVPVVTTGAGNP--GKYIPRLKENGVKVIPVVA 117 (307)
T ss_pred cCC--CCHHHH----HHHHHhCCCCEEEEcCCCc--HHHHHHHHHcCCEEEEEcC
Confidence 421 122332 4555578999999987754 3468999999999997764
No 261
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=81.74 E-value=3.5 Score=36.90 Aligned_cols=89 Identities=12% Similarity=0.119 Sum_probs=60.4
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
++.+.++|+|.|.+.|++|. .+-+++-...+.+++..+. .+.|-. +.+.--++.|+...+ ++|
T Consensus 145 ~~~~~~~G~~~i~l~DT~G~----------~~P~~v~~lv~~l~~~~~~-----~l~~H~-Hn~~Gla~An~laAi-~aG 207 (259)
T cd07939 145 AEVAQEAGADRLRFADTVGI----------LDPFTTYELIRRLRAATDL-----PLEFHA-HNDLGLATANTLAAV-RAG 207 (259)
T ss_pred HHHHHHCCCCEEEeCCCCCC----------CCHHHHHHHHHHHHHhcCC-----eEEEEe-cCCCChHHHHHHHHH-HhC
Confidence 45566889999999998874 4667777777888877652 234533 467888999999999 589
Q ss_pred CCEEEeCC----C---CCchHHHHHHHHHc-CCc
Q 026125 185 MDAIKLEG----G---SPSRITAARGIVEA-GIA 210 (243)
Q Consensus 185 AdaVKLEG----g---~~~~~~~i~~L~~~-GIP 210 (243)
|+.|---= + .--.+.++..|-+. |+.
T Consensus 208 ~~~vd~s~~G~G~~aGN~~tE~lv~~l~~~~g~~ 241 (259)
T cd07939 208 ATHVSVTVNGLGERAGNAALEEVVMALKHLYGRD 241 (259)
T ss_pred CCEEEEecccccccccCcCHHHHHHHHHHhcCCC
Confidence 99764321 0 11244556666665 664
No 262
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=81.74 E-value=16 Score=31.51 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=49.2
Q ss_pred EEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHH
Q 026125 94 ITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQA 172 (243)
Q Consensus 94 ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~A 172 (243)
-.+++|++...+..+.+.|+|.+-+ ||+.....++ ..+++++-.+ .|++ |-|+- +++++
T Consensus 107 ~~i~G~~t~~e~~~A~~~Gadyv~~----------Fpt~~~~G~~----~l~~~~~~~~~ipvv----aiGGI--~~~n~ 166 (187)
T PRK07455 107 PIIPGALTPTEIVTAWQAGASCVKV----------FPVQAVGGAD----YIKSLQGPLGHIPLI----PTGGV--TLENA 166 (187)
T ss_pred CEEcCcCCHHHHHHHHHCCCCEEEE----------CcCCcccCHH----HHHHHHhhCCCCcEE----EeCCC--CHHHH
Confidence 4678899999999999999999965 5543222333 3566776664 5542 33444 55444
Q ss_pred HHHHHHHHHHhCCCEEEeC
Q 026125 173 VDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 173 v~nA~Rl~keaGAdaVKLE 191 (243)
..++ ++||++|=+-
T Consensus 167 ----~~~l-~aGa~~vav~ 180 (187)
T PRK07455 167 ----QAFI-QAGAIAVGLS 180 (187)
T ss_pred ----HHHH-HCCCeEEEEe
Confidence 7777 5899998663
No 263
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=81.68 E-value=14 Score=32.85 Aligned_cols=91 Identities=24% Similarity=0.357 Sum_probs=58.3
Q ss_pred cCCHHHH----HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHH
Q 026125 99 AYDYPSA----VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVD 174 (243)
Q Consensus 99 AYD~~sA----~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~ 174 (243)
.||...| +.+++.|++.|= + |+..++ +...+.+++..+.| |.+|- +. .++++.
T Consensus 139 ~~~~~~a~~~~~~l~~~~i~~iE--e-------------P~~~~d-~~~~~~l~~~~~ip-ia~dE---~~-~~~~~~-- 195 (265)
T cd03315 139 GWTPKQAIRALRALEDLGLDYVE--Q-------------PLPADD-LEGRAALARATDTP-IMADE---SA-FTPHDA-- 195 (265)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEE--C-------------CCCccc-HHHHHHHHhhCCCC-EEECC---CC-CCHHHH--
Confidence 3776655 445666776662 1 222222 23345677777777 66774 34 366665
Q ss_pred HHHHHHHHhCCCEEEeC----CCCCchHHHHHHHHHcCCceeec
Q 026125 175 TAVRILKEGGMDAIKLE----GGSPSRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 175 nA~Rl~keaGAdaVKLE----Gg~~~~~~~i~~L~~~GIPV~GH 214 (243)
.+++++..+|.|.+. ||-.....+++.....||+++-|
T Consensus 196 --~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~ 237 (265)
T cd03315 196 --FRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVG 237 (265)
T ss_pred --HHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEec
Confidence 567777779999886 78544556566668899999988
No 264
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=81.66 E-value=4.8 Score=40.94 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=69.1
Q ss_pred HcCCCEEEeCcchhhhhccCCCCc-cCCHHHHHHHHHHHHccc--CCCcEEeeC-CCCCC---c-CCHHHHHH---HHHH
Q 026125 110 SAGIDICLVGDSAAMVVHGHDTTL-PITLEEMLVHCRAVARGA--KRPLLVGDL-PFGTY---E-SSTNQAVD---TAVR 178 (243)
Q Consensus 110 ~AGiDiILVGDSlgmv~lG~~dT~-~vTldeMi~h~~aV~Rga--~~~fvVaDm-PfgsY---~-~s~e~Av~---nA~R 178 (243)
+||.|+|.+- +.+.+..++...+ .-..+++...+-.++|.+ ...+|.+++ |+|.| . .+.+++.+ .-.+
T Consensus 54 ~AGAdvi~Tn-Ty~as~~~l~~~g~~~~~~~l~~~av~lAr~a~~~~~~VagsiGP~g~~~~~~~~~~~~~~~~~~~~~~ 132 (612)
T PRK08645 54 EAGADVIQTN-TFGANRIKLKRYGLEDKVKEINRAAVRLAREAAGDDVYVAGTIGPIGGRGPLGDISLEEIRREFREQID 132 (612)
T ss_pred HhCCCEEecC-cccccHHHHHhcCchHHHHHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 5788877543 3333222222211 123566655444444433 347788999 67665 1 24454433 2345
Q ss_pred HHHHhCCCEEEeCCCCC--chHHHHHHHHHcC-CceeeccCCcccccccccCccccccCHHhhcc
Q 026125 179 ILKEGGMDAIKLEGGSP--SRITAARGIVEAG-IAVMGHVGLTPQAISVLGGFRPQGKNVTSAVK 240 (243)
Q Consensus 179 l~keaGAdaVKLEGg~~--~~~~~i~~L~~~G-IPV~GHiGLtPQ~~~~~GGykvqGkt~~~A~~ 240 (243)
.+.++|+|.+-+|--.. +...+++++.+.+ +||+ +.++... +|.-.-|.+.+++..
T Consensus 133 ~l~~~gvD~l~~ET~~~~~Ea~a~~~a~~~~~~~p~~--~Sf~~~~----~g~l~~G~~~~~~~~ 191 (612)
T PRK08645 133 ALLEEGVDGLLLETFYDLEELLLALEAAREKTDLPII--AQVAFHE----DGVTQNGTSLEEALK 191 (612)
T ss_pred HHHhcCCCEEEEEccCCHHHHHHHHHHHHHhCCCcEE--EEEEECC----CCeeCCCCCHHHHHH
Confidence 55579999999996642 2334566676676 8996 5566543 344456666666544
No 265
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=81.57 E-value=14 Score=33.65 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=61.7
Q ss_pred HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 026125 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (243)
Q Consensus 107 iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGA 185 (243)
...+.|+|-|++..|.|- ...+|.||-..-.+.+++.+ ++..|++... . +.+++++.+.+. ++.||
T Consensus 29 ~l~~~Gv~gi~v~GstGE-------~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~----~-~t~~~i~~a~~a-~~~Ga 95 (289)
T cd00951 29 WLLSYGAAALFAAGGTGE-------FFSLTPDEYAQVVRAAVEETAGRVPVLAGAG----Y-GTATAIAYAQAA-EKAGA 95 (289)
T ss_pred HHHHcCCCEEEECcCCcC-------cccCCHHHHHHHHHHHHHHhCCCCCEEEecC----C-CHHHHHHHHHHH-HHhCC
Confidence 345689999987766644 24678898777777666654 3344666552 2 568888887655 57999
Q ss_pred CEEEeCCCCC------chHHHHHHHHH-cCCceeec
Q 026125 186 DAIKLEGGSP------SRITAARGIVE-AGIAVMGH 214 (243)
Q Consensus 186 daVKLEGg~~------~~~~~i~~L~~-~GIPV~GH 214 (243)
|++-+--... ......+.+.+ .++||+--
T Consensus 96 d~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lY 131 (289)
T cd00951 96 DGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVY 131 (289)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 9997753321 12233455655 57998754
No 266
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=81.39 E-value=51 Score=31.49 Aligned_cols=149 Identities=13% Similarity=0.113 Sum_probs=90.8
Q ss_pred CCCHHHH-HHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHccc
Q 026125 78 RVTLTHL-RQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA 151 (243)
Q Consensus 78 ~~tv~~L-r~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga 151 (243)
-+++.++ ++.++++--+-..++|+..+++ .||+.+.++|+ +..+. .-..|.+ .++.|...++..++-+
T Consensus 9 lv~~k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~-~~~~g~~-----~~~~~~~~~~~~a~~a 82 (321)
T PRK07084 9 LVNTREMFAKAVKGGYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGA-RKYANAT-----LLRYMAQGAVEYAKEL 82 (321)
T ss_pred ccCHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhH-HhhCCch-----HHHHHHHHHHHHHHHc
Confidence 3566664 4556777888999999999986 46888999887 44332 2112211 1444555555555433
Q ss_pred --CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCccccc
Q 026125 152 --KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQAI 222 (243)
Q Consensus 152 --~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ~~ 222 (243)
+-| |+.-+..+ .+.|.. .+.+ ++|...|.+.|+... +..+++..-..|++|=|=||-++..-
T Consensus 83 ~~~VP-V~lHLDHg---~~~e~i----~~ai-~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~e 153 (321)
T PRK07084 83 GCPIP-IVLHLDHG---DSFELC----KDCI-DSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVE 153 (321)
T ss_pred CCCCc-EEEECCCC---CCHHHH----HHHH-HcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCcc
Confidence 345 67777773 245544 5666 589999999888432 23456666788999988777776332
Q ss_pred ccccCccccccCHHhhccc
Q 026125 223 SVLGGFRPQGKNVTSAVKV 241 (243)
Q Consensus 223 ~~~GGykvqGkt~~~A~~l 241 (243)
.-..+-...=.+.++|.++
T Consensus 154 d~~~~~~~~~T~peeA~~F 172 (321)
T PRK07084 154 DEVSAEHHTYTQPEEVEDF 172 (321)
T ss_pred CCccCcccccCCHHHHHHH
Confidence 2111111222456777664
No 267
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=81.36 E-value=14 Score=34.12 Aligned_cols=107 Identities=18% Similarity=0.186 Sum_probs=67.5
Q ss_pred HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 106 ~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
....+.|+|-|++..|.|= ...+|.||=..-.+.+++.+ ++..|++.. + . |.+++++.+.+. ++.|
T Consensus 35 ~~l~~~Gv~Gi~~~GstGE-------~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv---~-~-~t~~~i~~~~~a-~~~G 101 (303)
T PRK03620 35 EWLAPYGAAALFAAGGTGE-------FFSLTPDEYSQVVRAAVETTAGRVPVIAGA---G-G-GTAQAIEYAQAA-ERAG 101 (303)
T ss_pred HHHHHcCCCEEEECcCCcC-------cccCCHHHHHHHHHHHHHHhCCCCcEEEec---C-C-CHHHHHHHHHHH-HHhC
Confidence 3455679999988766543 24578888777777666544 334466655 2 2 678999988665 4799
Q ss_pred CCEEEeCCCCC------chHHHHHHHHHc-CCceee----ccCCcccccccc
Q 026125 185 MDAIKLEGGSP------SRITAARGIVEA-GIAVMG----HVGLTPQAISVL 225 (243)
Q Consensus 185 AdaVKLEGg~~------~~~~~i~~L~~~-GIPV~G----HiGLtPQ~~~~~ 225 (243)
||+|-+--... ......+.+.++ ++||+- .+.|.|+....+
T Consensus 102 adav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L 153 (303)
T PRK03620 102 ADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARL 153 (303)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHH
Confidence 99997754421 123334556664 799883 245555544433
No 268
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=81.26 E-value=28 Score=31.28 Aligned_cols=119 Identities=10% Similarity=-0.052 Sum_probs=68.3
Q ss_pred CCCcEEEEecCCHHHHHHHHHcC----CCEEEeCcchhhh----hccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC
Q 026125 90 NGEPITMVTAYDYPSAVHLDSAG----IDICLVGDSAAMV----VHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (243)
Q Consensus 90 ~g~~ItmlTAYD~~sA~iae~AG----iDiILVGDSlgmv----~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP 161 (243)
.+.++.+++-........+.++| +|.|-+-++++=. .+|. +..=.++++...++.+++ ... -+....|
T Consensus 60 ~~~~~~~l~r~~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~--~~~~~~~~~~~~i~~a~~-~G~-~v~~~~~ 135 (268)
T cd07940 60 LNAEICGLARAVKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKK--TREEVLERAVEAVEYAKS-HGL-DVEFSAE 135 (268)
T ss_pred CCCEEEEEccCCHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCC--CHHHHHHHHHHHHHHHHH-cCC-eEEEeee
Confidence 35677777634444455566778 9998766555322 1221 111112333333333332 122 2457778
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-C---Cceeec
Q 026125 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-G---IAVMGH 214 (243)
Q Consensus 162 fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-G---IPV~GH 214 (243)
+.+. .+++..++.+.++. +.|++.|.|-|... ....+++.|.+. + ||+--|
T Consensus 136 ~~~~-~~~~~~~~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H 195 (268)
T cd07940 136 DATR-TDLDFLIEVVEAAI-EAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVH 195 (268)
T ss_pred cCCC-CCHHHHHHHHHHHH-HcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEE
Confidence 8555 57888888777776 68999999998732 344556666664 2 665555
No 269
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=81.12 E-value=23 Score=33.23 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=51.6
Q ss_pred HHHHhhhC-CCcEEE---EecCCHHHHHHHHHcCCCEEEeCcchhhhhc-------------cCCCCccCCHHHHHHHHH
Q 026125 83 HLRQKHKN-GEPITM---VTAYDYPSAVHLDSAGIDICLVGDSAAMVVH-------------GHDTTLPITLEEMLVHCR 145 (243)
Q Consensus 83 ~Lr~~kk~-g~~Itm---lTAYD~~sA~iae~AGiDiILVGDSlgmv~l-------------G~~dT~~vTldeMi~h~~ 145 (243)
.++...+. +-|+.+ -+..+...|+.++++|+|+|-|+..-|.... .+...-.++.-+.+ .
T Consensus 170 ~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l---~ 246 (333)
T TIGR02151 170 KIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASL---L 246 (333)
T ss_pred HHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHH---H
Confidence 34444333 567765 2336788899999999999977632221100 00000011111222 2
Q ss_pred HHHc-ccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 146 AVAR-GAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 146 aV~R-ga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
.+++ ..+.| |+++= +. .+.+++ .+.+. .|||+|-+
T Consensus 247 ~~~~~~~~ip-VIasG---GI-~~~~di----~kaLa-lGAd~V~i 282 (333)
T TIGR02151 247 EVRSDAPDAP-IIASG---GL-RTGLDV----AKAIA-LGADAVGM 282 (333)
T ss_pred HHHhcCCCCe-EEEEC---CC-CCHHHH----HHHHH-hCCCeehh
Confidence 2333 33444 67774 45 367777 45663 68999988
No 270
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=81.01 E-value=27 Score=29.39 Aligned_cols=87 Identities=13% Similarity=0.067 Sum_probs=50.8
Q ss_pred HhhhCCCcEEE--EecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC
Q 026125 86 QKHKNGEPITM--VTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (243)
Q Consensus 86 ~~kk~g~~Itm--lTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg 163 (243)
..++.|-++.+ +++.+...+..+...|+|.++++=+......| .+ ......+.+++.. +.++++|-
T Consensus 98 ~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~~----~~----~~~~~i~~~~~~~-~~~i~~~G--- 165 (202)
T cd04726 98 AAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAG----GW----WPEDDLKKVKKLL-GVKVAVAG--- 165 (202)
T ss_pred HHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcccccccC----CC----CCHHHHHHHHhhc-CCCEEEEC---
Confidence 33445666553 89999999988888899998874111001111 11 2234445565443 34456663
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 164 TYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 164 sY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
+ .|+++ +.+++ ++|||++-+-
T Consensus 166 G--I~~~~----i~~~~-~~Gad~vvvG 186 (202)
T cd04726 166 G--ITPDT----LPEFK-KAGADIVIVG 186 (202)
T ss_pred C--cCHHH----HHHHH-hcCCCEEEEe
Confidence 2 35554 35666 5899998774
No 271
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=80.96 E-value=15 Score=33.50 Aligned_cols=110 Identities=23% Similarity=0.225 Sum_probs=63.9
Q ss_pred HHHHHHHHcCCCEEEeCcchhh-hhccCCCCccCCHHHHHHHHHHHHcccCC-CcEEeeC--CCCCCcCCHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAM-VVHGHDTTLPITLEEMLVHCRAVARGAKR-PLLVGDL--PFGTYESSTNQAVDTAVR 178 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgm-v~lG~~dT~~vTldeMi~h~~aV~Rga~~-~fvVaDm--PfgsY~~s~e~Av~nA~R 178 (243)
.-|...+++|||.|=+|..... +.+++-+..+ ++ .++.+++..++ .+..--. .+-+|..-|.++.+.-++
T Consensus 25 ~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~--~e----~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~ 98 (275)
T cd07937 25 PIAEALDEAGFFSLEVWGGATFDVCMRFLNEDP--WE----RLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVE 98 (275)
T ss_pred HHHHHHHHcCCCEEEccCCcchhhhccccCCCH--HH----HHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHH
Confidence 3588899999999988853321 3344443322 22 22344443332 2221111 111233334556666667
Q ss_pred HHHHhCCCEEEeCCCCCc---hHHHHHHHHHcCCceeeccCCc
Q 026125 179 ILKEGGMDAIKLEGGSPS---RITAARGIVEAGIAVMGHVGLT 218 (243)
Q Consensus 179 l~keaGAdaVKLEGg~~~---~~~~i~~L~~~GIPV~GHiGLt 218 (243)
...+.|++.|.+-..... ....++...+.|.-|+.+++++
T Consensus 99 ~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~ 141 (275)
T cd07937 99 KAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYT 141 (275)
T ss_pred HHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 777899999999766432 3445677788999999888654
No 272
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=80.79 E-value=10 Score=34.67 Aligned_cols=64 Identities=23% Similarity=0.289 Sum_probs=45.8
Q ss_pred HHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC----CCCCchHHHHHHHHHcCCceeec
Q 026125 142 VHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE----GGSPSRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 142 ~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE----Gg~~~~~~~i~~L~~~GIPV~GH 214 (243)
...+.+++..+.| |.+|= +. .++++. .+++++.++|.|.+. ||-.....++....+.||+|+-|
T Consensus 218 ~~~~~L~~~~~ip-Ia~~E---~~-~~~~~~----~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~ 285 (316)
T cd03319 218 DGLAYLRDKSPLP-IMADE---SC-FSAADA----ARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVG 285 (316)
T ss_pred HHHHHHHhcCCCC-EEEeC---CC-CCHHHH----HHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3345688877777 56663 33 366665 578877899999987 77655566666667889999987
No 273
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=80.68 E-value=21 Score=34.50 Aligned_cols=99 Identities=20% Similarity=0.228 Sum_probs=63.2
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
+..+|+.. -+..|..=++=++..|+-..+||+|++-||=.-|.++-=..-| ..+..-.-++.|..+++...-| ||+|
T Consensus 142 ik~ik~~~-P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvp-iIAD 219 (346)
T PRK05096 142 VAKAREAW-PDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQ-IVSD 219 (346)
T ss_pred HHHHHHhC-CCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCC-EEec
Confidence 44455433 2355666688999999999999999998886655544222111 1122333467777777777666 8999
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
=.. .| .-+. .+.+ .+|||+|.+
T Consensus 220 GGi-~~---sGDI----~KAl-aaGAd~VMl 241 (346)
T PRK05096 220 GGC-TV---PGDV----AKAF-GGGADFVML 241 (346)
T ss_pred CCc-cc---ccHH----HHHH-HcCCCEEEe
Confidence 655 22 2344 2445 489999988
No 274
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=80.67 E-value=8.6 Score=32.71 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=50.3
Q ss_pred HcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEE
Q 026125 110 SAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIK 189 (243)
Q Consensus 110 ~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVK 189 (243)
+.|+|+|=+|-++ +...=+...+.+++-.+...+++|+.+. +++.. ..+.+.++|||.|-
T Consensus 22 ~~~v~~iev~~~l-------------~~~~g~~~i~~l~~~~~~~~i~~d~k~~----d~~~~---~~~~~~~~Gad~i~ 81 (206)
T TIGR03128 22 ADYVDIIEIGTPL-------------IKNEGIEAVKEMKEAFPDRKVLADLKTM----DAGEY---EAEQAFAAGADIVT 81 (206)
T ss_pred ccCeeEEEeCCHH-------------HHHhCHHHHHHHHHHCCCCEEEEEEeec----cchHH---HHHHHHHcCCCEEE
Confidence 4577777676333 1111134556676665555678999874 23321 12334479999986
Q ss_pred eCCCC--CchHHHHHHHHHcCCceee
Q 026125 190 LEGGS--PSRITAARGIVEAGIAVMG 213 (243)
Q Consensus 190 LEGg~--~~~~~~i~~L~~~GIPV~G 213 (243)
+-.-. .....+++.+.+.|++++.
T Consensus 82 vh~~~~~~~~~~~i~~~~~~g~~~~~ 107 (206)
T TIGR03128 82 VLGVADDATIKGAVKAAKKHGKEVQV 107 (206)
T ss_pred EeccCCHHHHHHHHHHHHHcCCEEEE
Confidence 54332 2235678888999999985
No 275
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=80.61 E-value=23 Score=30.87 Aligned_cols=94 Identities=21% Similarity=0.116 Sum_probs=51.3
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHH---cccCCCcEEeeCCCCCCc----CCHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVA---RGAKRPLLVGDLPFGTYE----SSTNQAVDTAV 177 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~---Rga~~~fvVaDmPfgsY~----~s~e~Av~nA~ 177 (243)
+..+-++|+|.+.+-...+. ...++++..+++++ +....++++ |....+.+ .+. +.++.+.
T Consensus 82 v~~a~~~Ga~~v~~~~~~~~----------~~~~~~~~~i~~v~~~~~~~g~~~ii-e~~~~g~~~~~~~~~-~~i~~~~ 149 (235)
T cd00958 82 VEDAVRLGADAVGVTVYVGS----------EEEREMLEELARVAAEAHKYGLPLIA-WMYPRGPAVKNEKDP-DLIAYAA 149 (235)
T ss_pred HHHHHHCCCCEEEEEEecCC----------chHHHHHHHHHHHHHHHHHcCCCEEE-EEeccCCcccCccCH-HHHHHHH
Confidence 44466889997755433321 11345555555544 456677665 43221221 133 4455545
Q ss_pred HHHHHhCCCEEEeCCCCCchHHHHHHHHHcC-Ccee
Q 026125 178 RILKEGGMDAIKLEGGSPSRITAARGIVEAG-IAVM 212 (243)
Q Consensus 178 Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~G-IPV~ 212 (243)
|...+.|||.||+.... -.+.++.+++.. +||+
T Consensus 150 ~~a~~~GaD~Ik~~~~~--~~~~~~~i~~~~~~pvv 183 (235)
T cd00958 150 RIGAELGADIVKTKYTG--DAESFKEVVEGCPVPVV 183 (235)
T ss_pred HHHHHHCCCEEEecCCC--CHHHHHHHHhcCCCCEE
Confidence 56667999999996432 133467777544 6664
No 276
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=80.57 E-value=17 Score=33.41 Aligned_cols=91 Identities=10% Similarity=0.137 Sum_probs=59.7
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
++.+.++|+|.|.+.|++|. .+-+++....+.+++..+.. .+.| -.+.+.--|+.|+...+ ++|
T Consensus 153 ~~~~~~~G~~~i~l~DT~G~----------~~P~~v~~l~~~l~~~~~~~----~i~~-H~Hnd~Gla~AN~laA~-~aG 216 (280)
T cd07945 153 VDFLSDLPIKRIMLPDTLGI----------LSPFETYTYISDMVKRYPNL----HFDF-HAHNDYDLAVANVLAAV-KAG 216 (280)
T ss_pred HHHHHHcCCCEEEecCCCCC----------CCHHHHHHHHHHHHhhCCCC----eEEE-EeCCCCCHHHHHHHHHH-HhC
Confidence 56677889999999998866 34556667777777655432 1223 23467788999999999 589
Q ss_pred CCEEEe--CCCC-----CchHHHHHHHH-HcCCce
Q 026125 185 MDAIKL--EGGS-----PSRITAARGIV-EAGIAV 211 (243)
Q Consensus 185 AdaVKL--EGg~-----~~~~~~i~~L~-~~GIPV 211 (243)
|+.|.. -|=. --.++++..|. ..|+.+
T Consensus 217 a~~vd~s~~GlGe~aGN~~~E~~v~~L~~~~g~~t 251 (280)
T cd07945 217 IKGLHTTVNGLGERAGNAPLASVIAVLKDKLKVKT 251 (280)
T ss_pred CCEEEEecccccccccCccHHHHHHHHHHhcCCCc
Confidence 998773 2211 12455566673 356653
No 277
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=80.52 E-value=4.4 Score=38.28 Aligned_cols=93 Identities=19% Similarity=0.187 Sum_probs=62.9
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
..|+.++++|+|.|.+-||.|. .+-+++....+++++..+.. ..+.|-+. .|..-++.|+...+ +
T Consensus 148 ~~a~~~~~~Ga~~i~i~DT~G~----------~~P~~v~~~v~~l~~~l~~~---i~ig~H~H-nnlGla~ANslaAi-~ 212 (337)
T PRK08195 148 EQAKLMESYGAQCVYVVDSAGA----------LLPEDVRDRVRALRAALKPD---TQVGFHGH-NNLGLGVANSLAAV-E 212 (337)
T ss_pred HHHHHHHhCCCCEEEeCCCCCC----------CCHHHHHHHHHHHHHhcCCC---CeEEEEeC-CCcchHHHHHHHHH-H
Confidence 4467788899999999999864 67788888888998876311 12345344 68889999999999 5
Q ss_pred hCCCEEEeC----CC---CCchHHHHHHHHHcCCc
Q 026125 183 GGMDAIKLE----GG---SPSRITAARGIVEAGIA 210 (243)
Q Consensus 183 aGAdaVKLE----Gg---~~~~~~~i~~L~~~GIP 210 (243)
+||+-|--- |+ .--.+.++..|.+.|+.
T Consensus 213 aGa~~iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~~ 247 (337)
T PRK08195 213 AGATRIDGSLAGLGAGAGNTPLEVLVAVLDRMGWE 247 (337)
T ss_pred hCCCEEEecChhhcccccCccHHHHHHHHHhcCCC
Confidence 899965321 00 11134455556565654
No 278
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=80.50 E-value=26 Score=31.62 Aligned_cols=103 Identities=25% Similarity=0.165 Sum_probs=58.5
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHc---ccCCCcEEeeCCCCCCc---CCHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR---GAKRPLLVGDLPFGTYE---SSTNQAVDTAVR 178 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R---ga~~~fvVaDmPfgsY~---~s~e~Av~nA~R 178 (243)
+.-+-+.|+|.+-+-.-.+. ...+++....++|++ ..+.||++-+.|.|-.- .++++ +..+.+
T Consensus 99 ve~A~~~Gad~v~~~~~~g~----------~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~-i~~a~~ 167 (267)
T PRK07226 99 VEEAIKLGADAVSVHVNVGS----------ETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEV-VAHAAR 167 (267)
T ss_pred HHHHHHcCCCEEEEEEecCC----------hhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHH-HHHHHH
Confidence 55566779887643322211 113444545555544 34678777554433210 13444 445556
Q ss_pred HHHHhCCCEEEeCCCCCchHHHHHHHHH-cCCceeeccCCccc
Q 026125 179 ILKEGGMDAIKLEGGSPSRITAARGIVE-AGIAVMGHVGLTPQ 220 (243)
Q Consensus 179 l~keaGAdaVKLEGg~~~~~~~i~~L~~-~GIPV~GHiGLtPQ 220 (243)
...|.|||-||.+-.. ....++.+++ ..|||..==|....
T Consensus 168 ~a~e~GAD~vKt~~~~--~~~~l~~~~~~~~ipV~a~GGi~~~ 208 (267)
T PRK07226 168 VAAELGADIVKTNYTG--DPESFREVVEGCPVPVVIAGGPKTD 208 (267)
T ss_pred HHHHHCCCEEeeCCCC--CHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 6668999999997432 1344677776 47998876666654
No 279
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=80.49 E-value=14 Score=31.61 Aligned_cols=76 Identities=12% Similarity=0.093 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-chHHHHHHHHHcCCceee
Q 026125 135 ITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-SRITAARGIVEAGIAVMG 213 (243)
Q Consensus 135 vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-~~~~~i~~L~~~GIPV~G 213 (243)
--+.+++..++...+..+..+++.+.+. . .+++.-.+..-+++ +-++|++-+..... .....++.+.+.||||+.
T Consensus 12 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~--~-~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~ 87 (275)
T cd06320 12 EFWRSLKEGYENEAKKLGVSVDIQAAPS--E-GDQQGQLSIAENMI-NKGYKGLLFSPISDVNLVPAVERAKKKGIPVVN 87 (275)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEccCC--C-CCHHHHHHHHHHHH-HhCCCEEEECCCChHHhHHHHHHHHHCCCeEEE
Confidence 3467778878887777777777766654 2 24443333333344 56899988865432 123446888999999996
Q ss_pred c
Q 026125 214 H 214 (243)
Q Consensus 214 H 214 (243)
.
T Consensus 88 ~ 88 (275)
T cd06320 88 V 88 (275)
T ss_pred E
Confidence 5
No 280
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=80.49 E-value=18 Score=35.46 Aligned_cols=66 Identities=24% Similarity=0.424 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE-eeCCCCCCcCCHHHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV-aDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
.-.+..+-++|+|+|.+ |+.. |+ +.++.+++ +.+++-.|+.+|+ +|. .|.+++ .+++
T Consensus 155 ~~~v~~lv~aGvDvI~i-D~a~----g~----~~~~~~~v---~~ik~~~p~~~vi~g~V------~T~e~a----~~l~ 212 (404)
T PRK06843 155 IERVEELVKAHVDILVI-DSAH----GH----STRIIELV---KKIKTKYPNLDLIAGNI------VTKEAA----LDLI 212 (404)
T ss_pred HHHHHHHHhcCCCEEEE-ECCC----CC----ChhHHHHH---HHHHhhCCCCcEEEEec------CCHHHH----HHHH
Confidence 46788888999999986 3331 33 23444544 5666666655454 564 356777 5566
Q ss_pred HHhCCCEEEe
Q 026125 181 KEGGMDAIKL 190 (243)
Q Consensus 181 keaGAdaVKL 190 (243)
++|||+|+.
T Consensus 213 -~aGaD~I~v 221 (404)
T PRK06843 213 -SVGADCLKV 221 (404)
T ss_pred -HcCCCEEEE
Confidence 589999996
No 281
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=80.38 E-value=13 Score=35.39 Aligned_cols=114 Identities=11% Similarity=0.002 Sum_probs=64.9
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhh----hccCCCCccCCHHHHHH----HHHHHHcccCCCcEEeeCCC
Q 026125 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMV----VHGHDTTLPITLEEMLV----HCRAVARGAKRPLLVGDLPF 162 (243)
Q Consensus 91 g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv----~lG~~dT~~vTldeMi~----h~~aV~Rga~~~fvVaDmPf 162 (243)
..++...+-........+.++|+|.|-+-.+++-. .+| .+.+|.+. ..+..++ .... +...+..
T Consensus 63 ~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~------~~~~~~~~~~~~~i~~ak~-~G~~-v~~~~ed 134 (363)
T TIGR02090 63 NAEICSLARALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLK------KSRDEVLEKAVEAVEYAKE-HGLI-VEFSAED 134 (363)
T ss_pred CcEEEEEcccCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC------CCHHHHHHHHHHHHHHHHH-cCCE-EEEEEee
Confidence 35666665566666777889999988654443221 222 34444443 3332221 1111 2344333
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC-----CchHHHHHHHHHc-CCceeec
Q 026125 163 GTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 163 gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~-----~~~~~~i~~L~~~-GIPV~GH 214 (243)
. +..+++..++.+.++. +.|++.|.|-|-. +....+++.|.++ ++|+--|
T Consensus 135 a-~r~~~~~l~~~~~~~~-~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~~~l~~H 190 (363)
T TIGR02090 135 A-TRTDIDFLIKVFKRAE-EAGADRINIADTVGVLTPQKMEELIKKLKENVKLPISVH 190 (363)
T ss_pred c-CCCCHHHHHHHHHHHH-hCCCCEEEEeCCCCccCHHHHHHHHHHHhcccCceEEEE
Confidence 2 3357788877776665 6999999998873 2344556666553 4665544
No 282
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=80.25 E-value=9.3 Score=35.95 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=60.6
Q ss_pred HHHhhhCC--CcEEEE--ecCCHH------HHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 026125 84 LRQKHKNG--EPITMV--TAYDYP------SAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 84 Lr~~kk~g--~~Itml--TAYD~~------sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~ 152 (243)
++++++.- .|+++= .-||-. -|++++++|+|++-| |..- .++|... ..+|. .+.|++..+
T Consensus 127 v~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr---~~~y~~~--ad~~~----I~~vk~~~~ 197 (323)
T COG0042 127 VKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTR---AQGYLGP--ADWDY----IKELKEAVP 197 (323)
T ss_pred HHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccH---HhcCCCc--cCHHH----HHHHHHhCC
Confidence 33444444 466543 336444 699999999999954 4443 3344433 44444 455777777
Q ss_pred CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHH
Q 026125 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRIT 199 (243)
Q Consensus 153 ~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~ 199 (243)
.-+|+++= +- .|++++ .+.++..|+|+|.+=-|....+-
T Consensus 198 ~ipvi~NG---dI-~s~~~a----~~~l~~tg~DgVMigRga~~nP~ 236 (323)
T COG0042 198 SIPVIANG---DI-KSLEDA----KEMLEYTGADGVMIGRGALGNPW 236 (323)
T ss_pred CCeEEeCC---Cc-CCHHHH----HHHHHhhCCCEEEEcHHHccCCc
Confidence 33356542 22 367777 78888999999999666433333
No 283
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=80.15 E-value=28 Score=31.55 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=58.4
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
.-++|+|-|++..|.|= -..+|.||=..-.+.+++.+ ++..|++.... .|.+++++.|... ++.|||
T Consensus 28 l~~~Gv~Gi~~~GstGE-------~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~----~s~~~~i~~a~~a-~~~Gad 95 (285)
T TIGR00674 28 QIENGTDAIVVVGTTGE-------SPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGS----NATEEAISLTKFA-EDVGAD 95 (285)
T ss_pred HHHcCCCEEEECccCcc-------cccCCHHHHHHHHHHHHHHhCCCCeEEEeCCC----ccHHHHHHHHHHH-HHcCCC
Confidence 33589999987656543 23578888666666555533 33335655422 3778999988655 479999
Q ss_pred EEEeCCC------CCchHHHHHHHHH-cCCcee
Q 026125 187 AIKLEGG------SPSRITAARGIVE-AGIAVM 212 (243)
Q Consensus 187 aVKLEGg------~~~~~~~i~~L~~-~GIPV~ 212 (243)
+|-+--- .+......+.+.+ .++||+
T Consensus 96 ~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~ 128 (285)
T TIGR00674 96 GFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPII 128 (285)
T ss_pred EEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 9988632 2223333455665 468887
No 284
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=80.10 E-value=27 Score=33.18 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=54.4
Q ss_pred HHHHhhhC-CCcEEE---EecCCHHHHHHHHHcCCCEEEeCcchhhh-------------hcc-CCCCccCCHHHHHHHH
Q 026125 83 HLRQKHKN-GEPITM---VTAYDYPSAVHLDSAGIDICLVGDSAAMV-------------VHG-HDTTLPITLEEMLVHC 144 (243)
Q Consensus 83 ~Lr~~kk~-g~~Itm---lTAYD~~sA~iae~AGiDiILVGDSlgmv-------------~lG-~~dT~~vTldeMi~h~ 144 (243)
.+++..+. +-|+.+ -+..+...|+.++++|+|.|-|+..-|.. ... ..+.+.-|.+.+..
T Consensus 177 ~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~-- 254 (352)
T PRK05437 177 NIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLE-- 254 (352)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHH--
Confidence 44444433 567775 23477899999999999999876442211 001 12222223333322
Q ss_pred HHHHcc-cCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 145 RAVARG-AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 145 ~aV~Rg-a~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
+++. .+.| |+++= +. .|..++ .+.+ ..|||+|.+-
T Consensus 255 --i~~~~~~ip-via~G---GI-~~~~dv----~k~l-~~GAd~v~ig 290 (352)
T PRK05437 255 --ARSLLPDLP-IIASG---GI-RNGLDI----AKAL-ALGADAVGMA 290 (352)
T ss_pred --HHHhcCCCe-EEEEC---CC-CCHHHH----HHHH-HcCCCEEEEh
Confidence 3333 2344 67764 44 366777 4566 4799999884
No 285
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=80.00 E-value=23 Score=32.50 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=55.9
Q ss_pred HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE---eeCCCC--CCcCCHHHHHHHHHHHHH
Q 026125 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV---GDLPFG--TYESSTNQAVDTAVRILK 181 (243)
Q Consensus 107 iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV---aDmPfg--sY~~s~e~Av~nA~Rl~k 181 (243)
.+.+.|||.|=+.|. +..++.|+-+...+.+.+ .-|.+ ..--|. ....++++-++.+.+.+
T Consensus 79 ~~k~lGf~~IEiS~G----------~~~i~~~~~~rlI~~~~~---~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~L- 144 (237)
T TIGR03849 79 ECDELGFEAVEISDG----------SMEISLEERCNLIERAKD---NGFMVLSEVGKKSPEKDSELTPDDRIKLINKDL- 144 (237)
T ss_pred HHHHcCCCEEEEcCC----------ccCCCHHHHHHHHHHHHh---CCCeEeccccccCCcccccCCHHHHHHHHHHHH-
Confidence 467889999966543 346788887766666553 22222 111111 22357899999999999
Q ss_pred HhCCCEEEeCC-------C-----CCchHHHHHHHHH
Q 026125 182 EGGMDAIKLEG-------G-----SPSRITAARGIVE 206 (243)
Q Consensus 182 eaGAdaVKLEG-------g-----~~~~~~~i~~L~~ 206 (243)
++||+.|.+|+ | .+...+++..|++
T Consensus 145 eAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~ 181 (237)
T TIGR03849 145 EAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAE 181 (237)
T ss_pred HCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHh
Confidence 69999999999 2 1234556677776
No 286
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.90 E-value=28 Score=32.55 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=54.6
Q ss_pred CcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHH
Q 026125 92 EPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQ 171 (243)
Q Consensus 92 ~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~ 171 (243)
++...+.+-+...|..+-++|+|+|+.+ .++.|++-..++.++...++..+.+- |+ .|.++
T Consensus 196 ~~~I~VEv~tleea~eA~~~GaD~I~LD--------------n~~~e~l~~av~~~~~~~~~i~leAs---GG--It~~n 256 (288)
T PRK07428 196 PLTIEVETETLEQVQEALEYGADIIMLD--------------NMPVDLMQQAVQLIRQQNPRVKIEAS---GN--ITLET 256 (288)
T ss_pred CCEEEEECCCHHHHHHHHHcCCCEEEEC--------------CCCHHHHHHHHHHHHhcCCCeEEEEE---CC--CCHHH
Confidence 5779999999999999999999999998 66778877766666543444433332 22 35554
Q ss_pred HHHHHHHHHHHhCCCEEEeC
Q 026125 172 AVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 172 Av~nA~Rl~keaGAdaVKLE 191 (243)
. ..+. +.|+|.|-+-
T Consensus 257 i----~~ya-~tGvD~Isvg 271 (288)
T PRK07428 257 I----RAVA-ETGVDYISSS 271 (288)
T ss_pred H----HHHH-HcCCCEEEEc
Confidence 4 5555 5899998773
No 287
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=79.85 E-value=6.2 Score=37.59 Aligned_cols=154 Identities=19% Similarity=0.143 Sum_probs=85.4
Q ss_pred CCCHHHHHHhhhCCCcEEEEecCCHHHHHH--HHHcCCCEEEeCcchhhhhccCCCCccC-CHHHHHHHH----HHHHcc
Q 026125 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVH--LDSAGIDICLVGDSAAMVVHGHDTTLPI-TLEEMLVHC----RAVARG 150 (243)
Q Consensus 78 ~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~i--ae~AGiDiILVGDSlgmv~lG~~dT~~v-TldeMi~h~----~aV~Rg 150 (243)
..+-.||+-+ |+..-+.-+|.-|...+.. --+||.|+|.+- +.+....-+.|-..- -..+|-..+ |+++..
T Consensus 31 ~l~~~df~g~-~g~nE~LnlT~Pd~I~~IH~aY~eAGADiIeTN-TFgat~i~lady~led~v~~in~~aa~iAR~aA~~ 108 (311)
T COG0646 31 GLDEADFRGL-KGNNELLNLTKPDVIEAIHRAYIEAGADIIETN-TFGATTIKLADYGLEDKVYEINQKAARIARRAADE 108 (311)
T ss_pred CCcHHhhccc-cCChHHHhcCCcHHHHHHHHHHHhccCcEEEec-CCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhh
Confidence 4566667664 3444555666666665533 348899999864 444433333322100 233443333 333333
Q ss_pred cC---CCcEEeeCCCCC--------CcCC---HHHHHHHHHHHHHHhCCCEEEeCCCCCc--hHHHHHHHHHcC------
Q 026125 151 AK---RPLLVGDLPFGT--------YESS---TNQAVDTAVRILKEGGMDAIKLEGGSPS--RITAARGIVEAG------ 208 (243)
Q Consensus 151 a~---~~fvVaDmPfgs--------Y~~s---~e~Av~nA~Rl~keaGAdaVKLEGg~~~--~~~~i~~L~~~G------ 208 (243)
.+ ..||.++|.=.+ |..+ .-++.+-.++.+.++|||++-+|=-... .-..+.++.+..
T Consensus 109 ~~~~k~rfVaGsiGPt~k~~~~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~ 188 (311)
T COG0646 109 AGDPKPRFVAGSIGPTNKTLSISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVR 188 (311)
T ss_pred cCCCCceEEEEeccCcCCcCCcCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCc
Confidence 22 456667763211 1122 3345566677777899999999966432 112233344444
Q ss_pred CceeeccCCcccccccccCccccccCHHhhc
Q 026125 209 IAVMGHVGLTPQAISVLGGFRPQGKNVTSAV 239 (243)
Q Consensus 209 IPV~GHiGLtPQ~~~~~GGykvqGkt~~~A~ 239 (243)
+|||-|.=.+. -|+-.-|.+.+++.
T Consensus 189 LPv~~s~Ti~~------sG~tl~Gq~~~a~~ 213 (311)
T COG0646 189 LPVMISGTITD------SGRTLSGQTIEAFL 213 (311)
T ss_pred ccEEEEEEEec------CceecCCCcHHHHH
Confidence 99999976655 36667788877654
No 288
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=79.85 E-value=22 Score=30.88 Aligned_cols=120 Identities=16% Similarity=0.105 Sum_probs=67.4
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHH----HHHcCCCEEEeCcchhh----hhccCCCCccCCHHHHHHHHHHHHccc
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVH----LDSAGIDICLVGDSAAM----VVHGHDTTLPITLEEMLVHCRAVARGA 151 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~i----ae~AGiDiILVGDSlgm----v~lG~~dT~~vTldeMi~h~~aV~Rga 151 (243)
.+.++.+...+ .++.+++-++...-.. +.++|+|.+-+-++++- ..++. +..-.++++...++..+. .
T Consensus 45 ~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~--~~~~~~~~~~~~v~~ak~-~ 120 (237)
T PF00682_consen 45 QVRRLREALPN-ARLQALCRANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNK--SREEALERIEEAVKYAKE-L 120 (237)
T ss_dssp HHHHHHHHHHS-SEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCS--HHHHHHHHHHHHHHHHHH-T
T ss_pred Hhhhhhhhhcc-cccceeeeehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcC--CHHHHHHHHHHHHHHHHh-c
Confidence 56667776555 6777777766655444 34599999976665543 22221 111113333333333322 1
Q ss_pred CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHH
Q 026125 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVE 206 (243)
Q Consensus 152 ~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~ 206 (243)
... +...++..+. .+++..++.+.++. +.|++.|.|-|... ...++++.+.+
T Consensus 121 g~~-v~~~~~~~~~-~~~~~~~~~~~~~~-~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~ 177 (237)
T PF00682_consen 121 GYE-VAFGCEDASR-TDPEELLELAEALA-EAGADIIYLADTVGIMTPEDVAELVRALRE 177 (237)
T ss_dssp TSE-EEEEETTTGG-SSHHHHHHHHHHHH-HHT-SEEEEEETTS-S-HHHHHHHHHHHHH
T ss_pred CCc-eEeCcccccc-ccHHHHHHHHHHHH-HcCCeEEEeeCccCCcCHHHHHHHHHHHHH
Confidence 222 3455555444 58888877776665 68999999998732 23455665655
No 289
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=79.67 E-value=26 Score=32.65 Aligned_cols=112 Identities=21% Similarity=0.330 Sum_probs=71.9
Q ss_pred cEEEE--ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC---CCc------EEe--e
Q 026125 93 PITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK---RPL------LVG--D 159 (243)
Q Consensus 93 ~Itml--TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~---~~f------vVa--D 159 (243)
|+++= -+ |+...+.+-++||+.+.+-.| ..+++|.+..++.|++-+. -+| +.+ |
T Consensus 79 PV~lHLDH~-~~~~i~~ai~~GftSVm~d~S------------~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed 145 (293)
T PRK07315 79 PVAIHLDHG-HYEDALECIEVGYTSIMFDGS------------HLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEED 145 (293)
T ss_pred cEEEECCCC-CHHHHHHHHHcCCCEEEEcCC------------CCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCc
Confidence 54443 35 666777788889998877644 3689999999999887332 111 111 2
Q ss_pred CCCC--CCcCCHHHHHHHHHHHHHHhCCCEEEeCCC----------CCchHHHHHHHHHc--CCceeeccC--Ccccccc
Q 026125 160 LPFG--TYESSTNQAVDTAVRILKEGGMDAIKLEGG----------SPSRITAARGIVEA--GIAVMGHVG--LTPQAIS 223 (243)
Q Consensus 160 mPfg--sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg----------~~~~~~~i~~L~~~--GIPV~GHiG--LtPQ~~~ 223 (243)
.-.+ .| .++|+| .++. +.|+|.+=+-=| ...-.+.++.|.+. +||++.|=| +.+....
T Consensus 146 ~~~g~s~~-t~peea----~~f~-~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~ 219 (293)
T PRK07315 146 GIIGKGEL-APIEDA----KAMV-ETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQ 219 (293)
T ss_pred cccCccCC-CCHHHH----HHHH-HcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCCHHHHH
Confidence 1111 25 589998 4566 589998876511 22334556777775 599999977 6665443
No 290
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=79.61 E-value=35 Score=31.97 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=53.8
Q ss_pred HHHHHhhhC-CCcEEEE---ecCCHHHHHHHHHcCCCEEEeCcchhhhh-------cc----------CCCCccCCHHHH
Q 026125 82 THLRQKHKN-GEPITMV---TAYDYPSAVHLDSAGIDICLVGDSAAMVV-------HG----------HDTTLPITLEEM 140 (243)
Q Consensus 82 ~~Lr~~kk~-g~~Itml---TAYD~~sA~iae~AGiDiILVGDSlgmv~-------lG----------~~dT~~vTldeM 140 (243)
..++...+. +-|+.+= +..+...|+.++++|+|.|-|+.. |... -+ +.+. .++.-+.
T Consensus 168 ~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~-GGt~~~~ie~~r~~~~~~~~~~~~~~~-g~~t~~~ 245 (326)
T cd02811 168 ERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGA-GGTSWARVENYRAKDSDQRLAEYFADW-GIPTAAS 245 (326)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCC-CCCcccccccccccccccccccccccc-cccHHHH
Confidence 445555544 5677762 337789999999999999987533 2211 01 0111 1222222
Q ss_pred HHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 141 LVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 141 i~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
+. .+++.. +.| |+++= +. .+.+++ .+.+. .|||+|-+-
T Consensus 246 l~---~~~~~~~~ip-IiasG---GI-r~~~dv----~kal~-lGAd~V~i~ 284 (326)
T cd02811 246 LL---EVRSALPDLP-LIASG---GI-RNGLDI----AKALA-LGADLVGMA 284 (326)
T ss_pred HH---HHHHHcCCCc-EEEEC---CC-CCHHHH----HHHHH-hCCCEEEEc
Confidence 22 233333 344 77875 44 366777 45663 689999884
No 291
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=79.58 E-value=54 Score=30.61 Aligned_cols=123 Identities=11% Similarity=0.124 Sum_probs=82.6
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 026125 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 79 ~tv~~-Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~ 152 (243)
++..+ |+..++++--+-..++||+.+++ +||+.+.++|+ +.-+. .-. ..++.+...++..++.++
T Consensus 4 v~~~~~l~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~-~~~--------~g~~~~~~~~~~~a~~~~ 74 (284)
T PRK12737 4 ISTKNMLKKAQAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGT-FSY--------AGTDYIVAIAEVAARKYN 74 (284)
T ss_pred CcHHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccH-Hhh--------CCHHHHHHHHHHHHHHCC
Confidence 45555 45566777889999999999986 57888999987 33222 111 234556666777887777
Q ss_pred CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCcc
Q 026125 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTP 219 (243)
Q Consensus 153 ~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtP 219 (243)
-| |..-|..+. +.|.. .+.+ +.|...|.+.|+..- +..+++..-..||.|=|=||-++
T Consensus 75 VP-ValHLDH~~---~~e~i----~~ai-~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~ig 139 (284)
T PRK12737 75 IP-LALHLDHHE---DLDDI----KKKV-RAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLG 139 (284)
T ss_pred CC-EEEECCCCC---CHHHH----HHHH-HcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecc
Confidence 77 677777733 34444 5666 489999999888432 22445556678999976666654
No 292
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=79.38 E-value=17 Score=33.98 Aligned_cols=104 Identities=18% Similarity=0.273 Sum_probs=55.2
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF 162 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf 162 (243)
++.+++.| ..++.++-+.-.|+.++++|+|+|. .|--.| ||.. ..+. ....-...|++..+.|++.+.
T Consensus 129 i~~l~~~g-i~v~~~v~s~~~A~~a~~~G~D~iv~qG~eAG----GH~g-~~~~--~~~~L~~~v~~~~~iPViaAG--- 197 (330)
T PF03060_consen 129 IERLHAAG-IKVIPQVTSVREARKAAKAGADAIVAQGPEAG----GHRG-FEVG--STFSLLPQVRDAVDIPVIAAG--- 197 (330)
T ss_dssp HHHHHHTT--EEEEEESSHHHHHHHHHTT-SEEEEE-TTSS----EE----SSG---HHHHHHHHHHH-SS-EEEES---
T ss_pred HHHHHHcC-CccccccCCHHHHHHhhhcCCCEEEEeccccC----CCCC-cccc--ceeeHHHHHhhhcCCcEEEec---
Confidence 44554444 5688899999999999999999875 554332 2322 1111 223334566666767755543
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCCCEEEe--------CCCCCchHHHHHHHHHc
Q 026125 163 GTYESSTNQAVDTAVRILKEGGMDAIKL--------EGGSPSRITAARGIVEA 207 (243)
Q Consensus 163 gsY~~s~e~Av~nA~Rl~keaGAdaVKL--------EGg~~~~~~~i~~L~~~ 207 (243)
+. .+.++. . ..+ ..|||+|.+ |.+. .+..-++|+++
T Consensus 198 -GI-~dg~~i-a---aal-~lGA~gV~~GTrFl~t~Es~~--~~~~K~~l~~a 241 (330)
T PF03060_consen 198 -GI-ADGRGI-A---AAL-ALGADGVQMGTRFLATEESGA--SDAYKQALVDA 241 (330)
T ss_dssp -S---SHHHH-H---HHH-HCT-SEEEESHHHHTSTTS-S---HHHHHHHHHG
T ss_pred -Cc-CCHHHH-H---HHH-HcCCCEeecCCeEEecccccC--hHHHHHHHHhC
Confidence 44 344544 2 334 479999997 3332 23445667776
No 293
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=79.11 E-value=15 Score=33.20 Aligned_cols=96 Identities=24% Similarity=0.219 Sum_probs=61.0
Q ss_pred HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 106 ~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
...-++|+|-++++.+.|= .-.+|.+|-..-.+.+++.++ +..|++...- .|.+++++.+... ++.|
T Consensus 29 ~~l~~~Gv~gl~~~GstGE-------~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~----~st~~~i~~a~~a-~~~G 96 (289)
T PF00701_consen 29 DFLIEAGVDGLVVLGSTGE-------FYSLTDEERKELLEIVVEAAAGRVPVIAGVGA----NSTEEAIELARHA-QDAG 96 (289)
T ss_dssp HHHHHTTSSEEEESSTTTT-------GGGS-HHHHHHHHHHHHHHHTTSSEEEEEEES----SSHHHHHHHHHHH-HHTT
T ss_pred HHHHHcCCCEEEECCCCcc-------cccCCHHHHHHHHHHHHHHccCceEEEecCcc----hhHHHHHHHHHHH-hhcC
Confidence 3455789999998766542 346789998888888777554 4446666533 3789999998665 5799
Q ss_pred CCEEEeCCC------CCchHHHHHHHHHcC-Cceee
Q 026125 185 MDAIKLEGG------SPSRITAARGIVEAG-IAVMG 213 (243)
Q Consensus 185 AdaVKLEGg------~~~~~~~i~~L~~~G-IPV~G 213 (243)
||+|-+--- .+......+.+.++- +|++=
T Consensus 97 ad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~i 132 (289)
T PF00701_consen 97 ADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIII 132 (289)
T ss_dssp -SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEE
T ss_pred ceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEE
Confidence 999986532 112233345555543 77763
No 294
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=79.08 E-value=39 Score=28.76 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=65.3
Q ss_pred CcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHH
Q 026125 92 EPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQ 171 (243)
Q Consensus 92 ~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~ 171 (243)
-+|-.-|..|...+..+.++|.|.+..|.+. .+.+..++. .+.+ ++. +. .|++|
T Consensus 56 ~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~~---------------~~~~~~~~~----~~~~-~i~-----gv-~t~~e 109 (190)
T cd00452 56 ALIGAGTVLTPEQADAAIAAGAQFIVSPGLD---------------PEVVKAANR----AGIP-LLP-----GV-ATPTE 109 (190)
T ss_pred CEEEEEeCCCHHHHHHHHHcCCCEEEcCCCC---------------HHHHHHHHH----cCCc-EEC-----Cc-CCHHH
Confidence 3445557899999999999999999765332 344443332 2333 332 34 27788
Q ss_pred HHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc--CCceeeccCCccccccc
Q 026125 172 AVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA--GIAVMGHVGLTPQAISV 224 (243)
Q Consensus 172 Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~--GIPV~GHiGLtPQ~~~~ 224 (243)
+ .+.+ +.|||.|++--....-...++.+.+. .+|++.==|.+|.....
T Consensus 110 ~----~~A~-~~Gad~i~~~p~~~~g~~~~~~l~~~~~~~p~~a~GGI~~~n~~~ 159 (190)
T cd00452 110 I----MQAL-ELGADIVKLFPAEAVGPAYIKALKGPFPQVRFMPTGGVSLDNAAE 159 (190)
T ss_pred H----HHHH-HCCCCEEEEcCCcccCHHHHHHHHhhCCCCeEEEeCCCCHHHHHH
Confidence 7 3444 58999999954433345567777653 48888777778876543
No 295
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=79.00 E-value=60 Score=30.81 Aligned_cols=125 Identities=12% Similarity=0.187 Sum_probs=84.5
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-
Q 026125 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK- 152 (243)
Q Consensus 79 ~tv~~-Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~- 152 (243)
+|..+ |++.++++--+-..++||..+++ .||+.+.++|+--..-..-. ..++.+...++..++-++
T Consensus 3 v~~k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~--------~g~~~~~~~~~~~a~~~~~ 74 (307)
T PRK05835 3 VKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKY--------MGIDMAVGMVKIMCERYPH 74 (307)
T ss_pred CCHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhh--------CChHHHHHHHHHHHHhcCC
Confidence 34444 45567788889999999999886 57888999997432222221 335566677777777665
Q ss_pred CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCccc
Q 026125 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQ 220 (243)
Q Consensus 153 ~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ 220 (243)
-| |..-+..+. +.|.. .+.+ ++|.+.|.+.|+..- +..+++..-..||+|=|=||-++.
T Consensus 75 VP-ValHLDHg~---~~e~i----~~ai-~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg 140 (307)
T PRK05835 75 IP-VALHLDHGT---TFESC----EKAV-KAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMG 140 (307)
T ss_pred Ce-EEEECCCCC---CHHHH----HHHH-HcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 45 778887732 44444 4556 489999999888421 234556666799999888887764
No 296
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=78.78 E-value=21 Score=33.58 Aligned_cols=114 Identities=11% Similarity=0.030 Sum_probs=66.6
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg 163 (243)
|-+|.|+| +.+-+-+...|++||+||.=.+.+=|-+..-+ ...+.|---.=..+.++|++.++.| ||+=-=-
T Consensus 3 ~~~~~~~g---~~~~v~~~~qa~~ae~aga~~v~~~~~~~~~~---~~~~~v~R~~~~~~I~~Ik~~V~iP-VIGi~K~- 74 (283)
T cd04727 3 FAQMLKGG---VIMDVTNAEQARIAEEAGAVAVMALERVPADI---RAAGGVARMADPKMIKEIMDAVSIP-VMAKVRI- 74 (283)
T ss_pred HHHHhcCC---eEEEeCCHHHHHHHHHcCceEEeeeccCchhh---hhcCCeeecCCHHHHHHHHHhCCCC-eEEeeeh-
Confidence 55677666 66778899999999999988877733332211 0001111111145567888888777 3421111
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc---hHHHHHHHHHc-CCceeeccC
Q 026125 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS---RITAARGIVEA-GIAVMGHVG 216 (243)
Q Consensus 164 sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~---~~~~i~~L~~~-GIPV~GHiG 216 (243)
.| ++.|..+. ++|||.| |..++ ..++++.+-.. ++|+|+-+.
T Consensus 75 ~~-------~~Ea~~L~-eaGvDiI---DaT~r~rP~~~~~~~iK~~~~~l~MAD~s 120 (283)
T cd04727 75 GH-------FVEAQILE-ALGVDMI---DESEVLTPADEEHHIDKHKFKVPFVCGAR 120 (283)
T ss_pred hH-------HHHHHHHH-HcCCCEE---eccCCCCcHHHHHHHHHHHcCCcEEccCC
Confidence 12 44445555 7999999 33221 23556666554 899987654
No 297
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=78.39 E-value=7.7 Score=35.25 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=12.0
Q ss_pred HHHHHHHHHcCCceeeccCCc
Q 026125 198 ITAARGIVEAGIAVMGHVGLT 218 (243)
Q Consensus 198 ~~~i~~L~~~GIPV~GHiGLt 218 (243)
+.++++-.++|.+.+=|+...
T Consensus 85 ~~vi~~al~~G~~iINsis~~ 105 (257)
T TIGR01496 85 AEVARAALEAGADIINDVSGG 105 (257)
T ss_pred HHHHHHHHHcCCCEEEECCCC
Confidence 344555556666666666554
No 298
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=78.37 E-value=18 Score=33.18 Aligned_cols=90 Identities=17% Similarity=0.117 Sum_probs=50.9
Q ss_pred CCcEEEEecCCH----HHHHHHHHcCCCEEEeCcchhh-------------------hhccCCCC--ccCCHHHHHHHHH
Q 026125 91 GEPITMVTAYDY----PSAVHLDSAGIDICLVGDSAAM-------------------VVHGHDTT--LPITLEEMLVHCR 145 (243)
Q Consensus 91 g~~ItmlTAYD~----~sA~iae~AGiDiILVGDSlgm-------------------v~lG~~dT--~~vTldeMi~h~~ 145 (243)
+.|+++=-.-|. ..|+.++++|+|.|.+-.++.. ..-||... .+++++ ..+
T Consensus 168 ~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~----~v~ 243 (299)
T cd02940 168 KIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALR----AVS 243 (299)
T ss_pred CCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHH----HHH
Confidence 356555444444 6888899999998865443322 01122211 122343 344
Q ss_pred HHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 146 AVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 146 aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
.+++..+ ...|+++= +- .|.+++ .+++ .+||++|.+=-+
T Consensus 244 ~~~~~~~~~ipIig~G---GI-~~~~da----~~~l-~aGA~~V~i~ta 283 (299)
T cd02940 244 QIARAPEPGLPISGIG---GI-ESWEDA----AEFL-LLGASVVQVCTA 283 (299)
T ss_pred HHHHhcCCCCcEEEEC---CC-CCHHHH----HHHH-HcCCChheEcee
Confidence 4555551 33367764 44 367888 5677 499999987433
No 299
>PLN02979 glycolate oxidase
Probab=78.33 E-value=35 Score=33.22 Aligned_cols=98 Identities=15% Similarity=0.103 Sum_probs=65.0
Q ss_pred CCCCHHHHHHhhh-CCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCc
Q 026125 77 QRVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL 155 (243)
Q Consensus 77 ~~~tv~~Lr~~kk-~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~f 155 (243)
..+|..+|..+.+ -+-|+.+=.+-+...|..+.++|+|.|.|+..-|- ..|..+-|++-+.+..+++. ++..
T Consensus 208 ~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGr----qld~~p~t~~~L~ei~~~~~---~~~~ 280 (366)
T PLN02979 208 RTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGAR----QLDYVPATISALEEVVKATQ---GRIP 280 (366)
T ss_pred CCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcC----CCCCchhHHHHHHHHHHHhC---CCCe
Confidence 3568888766533 34688888889999999999999999987755442 23555555555444434432 2344
Q ss_pred EEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 156 vVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
|++|=.+ . +..+. .+.+ ..||++|-+
T Consensus 281 Vi~dGGI---r-~G~Di----~KAL-ALGAdaV~i 306 (366)
T PLN02979 281 VFLDGGV---R-RGTDV----FKAL-ALGASGIFI 306 (366)
T ss_pred EEEeCCc---C-cHHHH----HHHH-HcCCCEEEE
Confidence 7888555 2 44555 3455 479999987
No 300
>PRK12999 pyruvate carboxylase; Reviewed
Probab=78.09 E-value=32 Score=37.92 Aligned_cols=119 Identities=22% Similarity=0.259 Sum_probs=75.4
Q ss_pred HHHHHHhhhCCCcEEEEec------CCH-------HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHH
Q 026125 81 LTHLRQKHKNGEPITMVTA------YDY-------PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTA------YD~-------~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV 147 (243)
+..|++.. .+.++.|+.= |.. .+-+.+.++|+|++-+.|++.- ++.|....++|
T Consensus 597 l~~~r~~~-~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd------------~~~~~~~i~~v 663 (1146)
T PRK12999 597 LAELREAA-PNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNW------------VENMRVAIDAV 663 (1146)
T ss_pred HHHHHHhC-CCCeEEEEecccccccccCCCchHHHHHHHHHHHcCCCEEEEeccCCh------------HHHHHHHHHHH
Confidence 55566654 4577777754 221 1345677889999999987722 56688888888
Q ss_pred HcccCCCcE-E---eeC--CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 148 ARGAKRPLL-V---GDL--PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 148 ~Rga~~~fv-V---aDm--PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
+..-....+ + +|. |+.+. .+++-.++.|.++. +.|||.|.|-|-.. .+..+|++|.++ +||+-=|
T Consensus 664 k~~g~~~~~~i~ytg~~~d~~~~~-~~~~~~~~~a~~l~-~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H 740 (1146)
T PRK12999 664 RETGKIAEAAICYTGDILDPARAK-YDLDYYVDLAKELE-KAGAHILAIKDMAGLLKPAAAYELVSALKEEVDLPIHLH 740 (1146)
T ss_pred HHcCCeEEEEEEEEecCCCCCCCC-CCHHHHHHHHHHHH-HcCCCEEEECCccCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 765221111 1 232 23222 26777777777766 69999999998733 244567777665 6777665
No 301
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=77.90 E-value=19 Score=29.97 Aligned_cols=74 Identities=19% Similarity=0.177 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-hHHHHHHHHHcCCceee
Q 026125 135 ITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-RITAARGIVEAGIAVMG 213 (243)
Q Consensus 135 vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-~~~~i~~L~~~GIPV~G 213 (243)
--+.+++...+...+..+.-+++.|... +++...+...+++. .++|+|-+.+.... ....++.+.+.||||+.
T Consensus 12 ~~~~~~~~~~~~~a~~~g~~~~~~~~~~-----~~~~~~~~~~~l~~-~~vdgvi~~~~~~~~~~~~~~~l~~~~ip~V~ 85 (267)
T cd01536 12 PFWQAMNKGAEAAAKELGVELIVLDAQN-----DVSKQIQQIEDLIA-QGVDGIIISPVDSAALTPALKKANAAGIPVVT 85 (267)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEECCCC-----CHHHHHHHHHHHHH-cCCCEEEEeCCCchhHHHHHHHHHHCCCcEEE
Confidence 3456677777777766666767766543 45655566666664 58999998765322 12356888999999987
Q ss_pred c
Q 026125 214 H 214 (243)
Q Consensus 214 H 214 (243)
=
T Consensus 86 ~ 86 (267)
T cd01536 86 V 86 (267)
T ss_pred e
Confidence 3
No 302
>PRK06852 aldolase; Validated
Probab=77.84 E-value=12 Score=35.35 Aligned_cols=72 Identities=10% Similarity=0.036 Sum_probs=48.3
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
.-|+++.+.|.|+|=|-..-- . +. -..|. .+.|.+++ +.|.|++.=|= .+.++.++.+...++
T Consensus 192 ~aaRiaaELGADIVKv~y~~~---~---~~--g~~e~----f~~vv~~~g~vpVviaGG~k----~~~~e~L~~v~~ai~ 255 (304)
T PRK06852 192 GAAGVAACLGADFVKVNYPKK---E---GA--NPAEL----FKEAVLAAGRTKVVCAGGSS----TDPEEFLKQLYEQIH 255 (304)
T ss_pred HHHHHHHHHcCCEEEecCCCc---C---CC--CCHHH----HHHHHHhCCCCcEEEeCCCC----CCHHHHHHHHHHHHH
Confidence 347999999999996652200 0 00 01122 23356677 88888887554 367889999998997
Q ss_pred HhCCCEEEe
Q 026125 182 EGGMDAIKL 190 (243)
Q Consensus 182 eaGAdaVKL 190 (243)
++||.+|-+
T Consensus 256 ~aGa~Gv~~ 264 (304)
T PRK06852 256 ISGASGNAT 264 (304)
T ss_pred HcCCceeee
Confidence 699999977
No 303
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=77.78 E-value=19 Score=34.71 Aligned_cols=88 Identities=17% Similarity=0.172 Sum_probs=56.8
Q ss_pred HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 026125 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (243)
Q Consensus 106 ~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGA 185 (243)
..+.+.|+|+|=+|.+. ...+-...++++++..+.++++.|+-+... ++.- .++..++||
T Consensus 23 ~~~~~~Gv~~ie~g~p~-------------~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~---g~~~----v~~a~~aGA 82 (430)
T PRK07028 23 KEAVAGGADWIEAGTPL-------------IKSEGMNAIRTLRKNFPDHTIVADMKTMDT---GAIE----VEMAAKAGA 82 (430)
T ss_pred HHHHhcCCcEEEeCCHH-------------HHHhhHHHHHHHHHHCCCCEEEEEeeeccc---hHHH----HHHHHHcCC
Confidence 33445899999654211 123336677888887778899999877544 2332 244457999
Q ss_pred CEEEeCCCCC--chHHHHHHHHHcCCceee
Q 026125 186 DAIKLEGGSP--SRITAARGIVEAGIAVMG 213 (243)
Q Consensus 186 daVKLEGg~~--~~~~~i~~L~~~GIPV~G 213 (243)
|+|.+-|... ....+++...+.|++++-
T Consensus 83 dgV~v~g~~~~~~~~~~i~~a~~~G~~~~~ 112 (430)
T PRK07028 83 DIVCILGLADDSTIEDAVRAARKYGVRLMA 112 (430)
T ss_pred CEEEEecCCChHHHHHHHHHHHHcCCEEEE
Confidence 9999755422 233556777889998863
No 304
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=77.70 E-value=26 Score=33.62 Aligned_cols=71 Identities=18% Similarity=0.158 Sum_probs=51.8
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHh
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~kea 183 (243)
.++.+.++|+|.|.+.|++|+. +-.++-...+++++..+..- +.| -.+.+.--|+.|+...+ ++
T Consensus 202 ~~~~~~~~Gad~I~l~DT~G~a----------~P~~v~~lv~~l~~~~~~~~----i~~-H~Hnd~GlA~AN~lAA~-~a 265 (347)
T PLN02746 202 VAKELYDMGCYEISLGDTIGVG----------TPGTVVPMLEAVMAVVPVDK----LAV-HFHDTYGQALANILVSL-QM 265 (347)
T ss_pred HHHHHHHcCCCEEEecCCcCCc----------CHHHHHHHHHHHHHhCCCCe----EEE-EECCCCChHHHHHHHHH-Hh
Confidence 3677889999999999998773 45566666777877665321 223 23467788999999999 58
Q ss_pred CCCEEEe
Q 026125 184 GMDAIKL 190 (243)
Q Consensus 184 GAdaVKL 190 (243)
||+.|-.
T Consensus 266 Ga~~vd~ 272 (347)
T PLN02746 266 GISTVDS 272 (347)
T ss_pred CCCEEEE
Confidence 9998764
No 305
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=77.69 E-value=47 Score=29.22 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=59.3
Q ss_pred EEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHH
Q 026125 94 ITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAV 173 (243)
Q Consensus 94 ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av 173 (243)
+-+.+--+...|.++.++|+|+|-. ++=-.+.-.|+.++.-.-++.+....+.--|.+ ..++++.
T Consensus 3 vKICGit~~eda~~~~~~GaD~iGf-------If~~~SpR~V~~~~a~~i~~~~~~~~~~VgVf~-------~~~~~~i- 67 (207)
T PRK13958 3 LKFCGFTTIKDVTAASQLPIDAIGF-------IHYEKSKRHQTITQIKKLASAVPNHIDKVCVVV-------NPDLTTI- 67 (207)
T ss_pred EEEcCCCcHHHHHHHHHcCCCEEEE-------ecCCCCcccCCHHHHHHHHHhCCCCCCEEEEEe-------CCCHHHH-
Confidence 3455667888899999999999843 111235566888875443333321111111112 2356666
Q ss_pred HHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc--CCcee
Q 026125 174 DTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA--GIAVM 212 (243)
Q Consensus 174 ~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~--GIPV~ 212 (243)
.+++++.|-|.|+|.|... +..++.|... +++++
T Consensus 68 ---~~~~~~~~~d~vQLHG~e~--~~~~~~l~~~~~~~~ii 103 (207)
T PRK13958 68 ---EHILSNTSINTIQLHGTES--IDFIQEIKKKYSSIKII 103 (207)
T ss_pred ---HHHHHhCCCCEEEECCCCC--HHHHHHHhhcCCCceEE
Confidence 4566678999999998753 4556777653 36654
No 306
>PTZ00411 transaldolase-like protein; Provisional
Probab=77.58 E-value=68 Score=30.77 Aligned_cols=115 Identities=15% Similarity=0.252 Sum_probs=71.7
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE--EeC---cchhh--hhccC---CCCccCCHHHHHHHHHHHHcc
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC--LVG---DSAAM--VVHGH---DTTLPITLEEMLVHCRAVARG 150 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI--LVG---DSlgm--v~lG~---~dT~~vTldeMi~h~~aV~Rg 150 (243)
+.-.+.+.+.|-++-+-.+|+...|.+|.+||++.| .|| |+.-. ...++ .+-+-..+.++....+. .+
T Consensus 150 i~Aa~~L~~eGI~~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~--~g 227 (333)
T PTZ00411 150 IQAAKALEKEGIHCNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKK--HG 227 (333)
T ss_pred HHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHH--cC
Confidence 555667778899999999999999999999999998 588 43110 00011 11111222233222211 14
Q ss_pred cCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcC-CceeeccC
Q 026125 151 AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAG-IAVMGHVG 216 (243)
Q Consensus 151 a~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~G-IPV~GHiG 216 (243)
.+.-++.+ || .|+++..+ + +|||.+-+- +.+.+.|.+.. -||.-++.
T Consensus 228 ~~T~Im~A-----Sf-Rn~~qi~~-----l--aG~D~lTi~------p~ll~~L~~~~~~~~~~~l~ 275 (333)
T PTZ00411 228 YKTIVMGA-----SF-RNTGEILE-----L--AGCDKLTIS------PKLLEELANTEDGPVERKLD 275 (333)
T ss_pred CCeEEEec-----cc-CCHHHHHH-----H--HCCCEEeCC------HHHHHHHHhCCCcccCcccC
Confidence 44333223 67 58888743 2 699999774 56678898888 77777753
No 307
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=77.56 E-value=23 Score=32.23 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=45.6
Q ss_pred HHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC
Q 026125 83 HLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF 162 (243)
Q Consensus 83 ~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf 162 (243)
.|.+.-++.....+.|+||..++..+++.|++.+=|+.. .++--.++.++. + ++.| ||..+..
T Consensus 60 ~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~------------dl~n~~lL~~~A---~-tgkP-vIlSTG~ 122 (241)
T PF03102_consen 60 ELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASG------------DLTNLPLLEYIA---K-TGKP-VILSTGM 122 (241)
T ss_dssp HHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GG------------GTT-HHHHHHHH---T-T-S--EEEE-TT
T ss_pred HHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccc------------cccCHHHHHHHH---H-hCCc-EEEECCC
Confidence 344555566778899999999999999999999977621 234445555433 3 6666 5666555
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCCCE
Q 026125 163 GTYESSTNQAVDTAVRILKEGGMDA 187 (243)
Q Consensus 163 gsY~~s~e~Av~nA~Rl~keaGAda 187 (243)
.+. +=++.|++.+++.|..=
T Consensus 123 stl-----~EI~~Av~~~~~~~~~~ 142 (241)
T PF03102_consen 123 STL-----EEIERAVEVLREAGNED 142 (241)
T ss_dssp --H-----HHHHHHHHHHHHHCT--
T ss_pred CCH-----HHHHHHHHHHHhcCCCC
Confidence 333 33445566774444443
No 308
>PLN02363 phosphoribosylanthranilate isomerase
Probab=77.44 E-value=42 Score=30.78 Aligned_cols=100 Identities=18% Similarity=0.156 Sum_probs=62.9
Q ss_pred cEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHc-ccCCCcEEeeCCCCCCcCCHHH
Q 026125 93 PITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR-GAKRPLLVGDLPFGTYESSTNQ 171 (243)
Q Consensus 93 ~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R-ga~~~fvVaDmPfgsY~~s~e~ 171 (243)
.+-+.+--+...|+++.++|+|+|-+ ++--++.-.||.++.-..++.+.. +...--|..| .++++
T Consensus 48 ~VKICGit~~eda~~a~~~GaD~iGf-------If~~~SpR~Vs~e~a~~I~~~l~~~~~~~VgVfv~-------~~~~~ 113 (256)
T PLN02363 48 LVKMCGITSARDAAMAVEAGADFIGM-------ILWPKSKRSISLSVAKEISQVAREGGAKPVGVFVD-------DDANT 113 (256)
T ss_pred eEEECCCCcHHHHHHHHHcCCCEEEE-------ecCCCCCCcCCHHHHHHHHHhccccCccEEEEEeC-------CCHHH
Confidence 56667778999999999999999843 122235567888876655554432 1111111122 35565
Q ss_pred HHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceee
Q 026125 172 AVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMG 213 (243)
Q Consensus 172 Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~G 213 (243)
. .+++++.|-|.|+|.|... +..++.|. .+++|+-
T Consensus 114 I----~~~~~~~~ld~VQLHG~e~--~~~~~~l~-~~~~iik 148 (256)
T PLN02363 114 I----LRAADSSDLELVQLHGNGS--RAAFSRLV-RERKVIY 148 (256)
T ss_pred H----HHHHHhcCCCEEEECCCCC--HHHHHHhh-cCCcEEE
Confidence 5 5667788999999998753 44466664 3366554
No 309
>PRK12376 putative translaldolase; Provisional
Probab=77.28 E-value=58 Score=29.70 Aligned_cols=101 Identities=11% Similarity=0.068 Sum_probs=63.5
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHc----CCCEE--EeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCC
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSA----GIDIC--LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP 154 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~A----GiDiI--LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~ 154 (243)
+.-++++.++|-++.+-.+|+...|.++-+| |.|.| .|| -+ +|.+.-.++.+....+.+.+..+.-
T Consensus 102 l~Ai~~L~~~GI~vn~T~vfs~~Qa~~a~~A~ag~ga~yispfvg-R~-------dd~g~D~~~~i~~i~~i~~~~~~tk 173 (236)
T PRK12376 102 IPLIKKLSADGVKLNVTAIFTIEQVKEVVDALTPGVPAIVSVFAG-RI-------ADTGVDPVPLMKEALAICHSKPGVE 173 (236)
T ss_pred HHHHHHHHHCCCeEEEeeecCHHHHHHHHHHhcCCCCeEEEEecc-hh-------hhcCCCcHHHHHHHHHHHHhCCCcE
Confidence 6667888899999999999999999855555 57877 466 11 1222223333333333443432233
Q ss_pred cEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH
Q 026125 155 LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE 206 (243)
Q Consensus 155 fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~ 206 (243)
++.+ |+ .++.+.. +.+ .+|||.+-+- +++.+.|.+
T Consensus 174 ILaA-----Si-R~~~~v~----~a~-~~Gad~vTvp------~~v~~~l~~ 208 (236)
T PRK12376 174 LLWA-----SP-REVYNII----QAD-QLGCDIITVT------PDVLKKLPL 208 (236)
T ss_pred EEEE-----ec-CCHHHHH----HHH-HcCCCEEEcC------HHHHHHHHh
Confidence 3333 77 5888884 455 4899999885 455676765
No 310
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=77.14 E-value=6.3 Score=36.54 Aligned_cols=125 Identities=19% Similarity=0.225 Sum_probs=69.0
Q ss_pred CCcEEEEecCCHHH----HHHHHHcCCCEE-E-eCcchhh-hhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC
Q 026125 91 GEPITMVTAYDYPS----AVHLDSAGIDIC-L-VGDSAAM-VVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (243)
Q Consensus 91 g~~ItmlTAYD~~s----A~iae~AGiDiI-L-VGDSlgm-v~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg 163 (243)
+..++.+...|... |.++++.|+|.| | .|=.... +--|+-+.+.-..+.+....++++++++.|+ .+-+=.
T Consensus 54 ~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pv-svKiR~- 131 (309)
T PF01207_consen 54 RPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPV-SVKIRL- 131 (309)
T ss_dssp -TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEE-EEEEES-
T ss_pred cceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccce-EEeccc-
Confidence 34677888888754 455566789988 4 5543333 3345556666677888888999999998884 444433
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------chHHHHHHHHH-cCCceeeccCCc
Q 026125 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVE-AGIAVMGHVGLT 218 (243)
Q Consensus 164 sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-------~~~~~i~~L~~-~GIPV~GHiGLt 218 (243)
++..+.++.++.+.++. ++|+++|-+-|-.. -.-+.|+.+.+ ..|||++.=|+.
T Consensus 132 g~~~~~~~~~~~~~~l~-~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~ 193 (309)
T PF01207_consen 132 GWDDSPEETIEFARILE-DAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIF 193 (309)
T ss_dssp ECT--CHHHHHHHHHHH-HTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--
T ss_pred ccccchhHHHHHHHHhh-hcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccC
Confidence 22235677887776555 69999998866210 01122344443 359999986653
No 311
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=77.10 E-value=21 Score=33.37 Aligned_cols=108 Identities=15% Similarity=0.217 Sum_probs=70.5
Q ss_pred CCCcEEEE--ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC-CcEE-eeCCCC--
Q 026125 90 NGEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR-PLLV-GDLPFG-- 163 (243)
Q Consensus 90 ~g~~Itml--TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~-~fvV-aDmPfg-- 163 (243)
.+-|+++= -+.|+...+-|=++||+-+.+- ....++||-+..++.|++-+.. -.-| +-+..-
T Consensus 73 ~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~D------------gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg 140 (283)
T PRK07998 73 MDVPVSLHLDHGKTFEDVKQAVRAGFTSVMID------------GAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILG 140 (283)
T ss_pred CCCCEEEECcCCCCHHHHHHHHHcCCCEEEEe------------CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCC
Confidence 34454433 4578877777888899977662 2346899999999998774421 1111 211111
Q ss_pred ----------CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC--------CchHHHHHHHHHc-CCceeec
Q 026125 164 ----------TYESSTNQAVDTAVRILKEGGMDAIKLEGGS--------PSRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 164 ----------sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~--------~~~~~~i~~L~~~-GIPV~GH 214 (243)
.| ++|+++ .+|+++.|+|++.+-=|. ....+.++.|.++ +||.+=|
T Consensus 141 ~ed~~~~~~~~~-T~pe~a----~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlH 205 (283)
T PRK07998 141 KEDDHVSEADCK-TEPEKV----KDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIH 205 (283)
T ss_pred cccccccccccc-CCHHHH----HHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEEe
Confidence 15 689988 789999999998886542 1223556777666 7888877
No 312
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=76.96 E-value=28 Score=28.76 Aligned_cols=76 Identities=17% Similarity=0.135 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccC
Q 026125 137 LEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG 216 (243)
Q Consensus 137 ldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiG 216 (243)
+..+..-.+...+..+..+++.|-. .++++......+++ ..++|+|-+-+....... ++.+.++||||+..-.
T Consensus 14 ~~~~~~g~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~d~iii~~~~~~~~~-~~~~~~~~ipvv~~~~ 86 (264)
T cd06267 14 FAELLRGIEEAAREAGYSVLLCNSD-----EDPEKEREALELLL-SRRVDGIILAPSRLDDEL-LEELAALGIPVVLVDR 86 (264)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCC-----CCHHHHHHHHHHHH-HcCcCEEEEecCCcchHH-HHHHHHcCCCEEEecc
Confidence 3444544444444444455555432 24555555555565 568999999777654444 6789999999998765
Q ss_pred Ccc
Q 026125 217 LTP 219 (243)
Q Consensus 217 LtP 219 (243)
..|
T Consensus 87 ~~~ 89 (264)
T cd06267 87 PLD 89 (264)
T ss_pred ccc
Confidence 544
No 313
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=76.85 E-value=29 Score=33.08 Aligned_cols=68 Identities=13% Similarity=0.300 Sum_probs=44.5
Q ss_pred CHHHHHHHHHcC--CCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee-CCCCCCcCCHHHHHHHHH
Q 026125 101 DYPSAVHLDSAG--IDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD-LPFGTYESSTNQAVDTAV 177 (243)
Q Consensus 101 D~~sA~iae~AG--iDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD-mPfgsY~~s~e~Av~nA~ 177 (243)
|.......-++| .|.|.+- + .+||.. .++...+.+++..|.+++++- . .+.+.| .
T Consensus 95 ~~~r~~~lv~a~~~~d~i~~D-~----ahg~s~-------~~~~~i~~i~~~~p~~~vi~GnV------~t~e~a----~ 152 (321)
T TIGR01306 95 EYEFVTQLAEEALTPEYITID-I----AHGHSN-------SVINMIKHIKTHLPDSFVIAGNV------GTPEAV----R 152 (321)
T ss_pred HHHHHHHHHhcCCCCCEEEEe-C----ccCchH-------HHHHHHHHHHHhCCCCEEEEecC------CCHHHH----H
Confidence 334445555667 5887663 2 244443 456667788888898877754 3 255666 5
Q ss_pred HHHHHhCCCEEEeC
Q 026125 178 RILKEGGMDAIKLE 191 (243)
Q Consensus 178 Rl~keaGAdaVKLE 191 (243)
+++ ++|||+|++.
T Consensus 153 ~l~-~aGad~I~V~ 165 (321)
T TIGR01306 153 ELE-NAGADATKVG 165 (321)
T ss_pred HHH-HcCcCEEEEC
Confidence 666 6999999987
No 314
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=76.82 E-value=30 Score=31.22 Aligned_cols=81 Identities=20% Similarity=0.312 Sum_probs=52.3
Q ss_pred hCCCcEEEE---------ecCCHHH----HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCc
Q 026125 89 KNGEPITMV---------TAYDYPS----AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL 155 (243)
Q Consensus 89 k~g~~Itml---------TAYD~~s----A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~f 155 (243)
+.|-|+.++ ++||... ++++.++|+|.|=++.. | . +...+.++++.+.|+
T Consensus 137 ~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~------~-------~----~~~l~~~~~~~~ipV 199 (267)
T PRK07226 137 EWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYT------G-------D----PESFREVVEGCPVPV 199 (267)
T ss_pred HcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCC------C-------C----HHHHHHHHHhCCCCE
Confidence 457777664 6666444 68888999999977621 1 1 233455666667776
Q ss_pred EEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 156 vVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
+...=+- . .|.++++++....+ ++||+++-.
T Consensus 200 ~a~GGi~--~-~~~~~~l~~v~~~~-~aGA~Gis~ 230 (267)
T PRK07226 200 VIAGGPK--T-DTDREFLEMVRDAM-EAGAAGVAV 230 (267)
T ss_pred EEEeCCC--C-CCHHHHHHHHHHHH-HcCCcEEeh
Confidence 5533111 1 26688988888888 589998754
No 315
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=76.81 E-value=13 Score=33.30 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=42.2
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCc-CCHHHHHHHHHHHHHHh
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYE-SSTNQAVDTAVRILKEG 183 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~-~s~e~Av~nA~Rl~kea 183 (243)
++.+.++|+|.|-++.. ..++. .+.+++..+.|++.. |+-. .+.+++++|+-.++ ++
T Consensus 162 ~~~a~~~GADyikt~~~-------------~~~~~----l~~~~~~~~iPVva~----GGi~~~~~~~~~~~i~~~~-~a 219 (258)
T TIGR01949 162 ARLGAELGADIVKTPYT-------------GDIDS----FRDVVKGCPAPVVVA----GGPKTNSDREFLQMIKDAM-EA 219 (258)
T ss_pred HHHHHHHCCCEEeccCC-------------CCHHH----HHHHHHhCCCcEEEe----cCCCCCCHHHHHHHHHHHH-Hc
Confidence 57778889999987521 12332 345666667776553 3442 16788999988888 58
Q ss_pred CCCEEEe
Q 026125 184 GMDAIKL 190 (243)
Q Consensus 184 GAdaVKL 190 (243)
||+++-.
T Consensus 220 Ga~Gia~ 226 (258)
T TIGR01949 220 GAAGVAV 226 (258)
T ss_pred CCcEEeh
Confidence 9998755
No 316
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=76.73 E-value=21 Score=33.32 Aligned_cols=93 Identities=19% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCC---------CccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDT---------TLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVD 174 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~d---------T~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~ 174 (243)
.|+.++++|+|.|.+-.+.-....-.++ .++......+...+.+++..+.|++-. |+. .|.+++
T Consensus 182 ~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~----GGI-~s~~Da-- 254 (334)
T PRK07565 182 MAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAAT----TGV-HDAEDV-- 254 (334)
T ss_pred HHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEE----CCC-CCHHHH--
Q ss_pred HHHHHHHHhCCCEEEeC-----CCCCchHHHHHHHHH
Q 026125 175 TAVRILKEGGMDAIKLE-----GGSPSRITAARGIVE 206 (243)
Q Consensus 175 nA~Rl~keaGAdaVKLE-----Gg~~~~~~~i~~L~~ 206 (243)
.+++ .+||++|.+- .|......+++.|.+
T Consensus 255 --~e~l-~aGA~~V~v~t~~~~~g~~~~~~i~~~L~~ 288 (334)
T PRK07565 255 --IKML-LAGADVVMIASALLRHGPDYIGTILRGLED 288 (334)
T ss_pred --HHHH-HcCCCceeeehHHhhhCcHHHHHHHHHHHH
No 317
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=76.67 E-value=25 Score=33.12 Aligned_cols=93 Identities=16% Similarity=0.162 Sum_probs=51.7
Q ss_pred HHHHHHHHcC-CCEEEe-Ccchhhh---hccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHH
Q 026125 103 PSAVHLDSAG-IDICLV-GDSAAMV---VHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAV 177 (243)
Q Consensus 103 ~sA~iae~AG-iDiILV-GDSlgmv---~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~ 177 (243)
..|+.++++| +|+|-| +.+.... ....++.. ..-.-.+..++.|++..+.|+++. |.+ .+++++ -
T Consensus 232 ~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ik~~~~ipvi~~----G~i-~~~~~~----~ 301 (343)
T cd04734 232 EIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMG-MPPGPFLPLAARIKQAVDLPVFHA----GRI-RDPAEA----E 301 (343)
T ss_pred HHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCC-CCcchhHHHHHHHHHHcCCCEEee----CCC-CCHHHH----H
Confidence 5678889998 899855 3222110 11111110 001112456667777777775442 345 367776 5
Q ss_pred HHHHHhCCCEEEeCCCCCchHHHHHHHH
Q 026125 178 RILKEGGMDAIKLEGGSPSRITAARGIV 205 (243)
Q Consensus 178 Rl~keaGAdaVKLEGg~~~~~~~i~~L~ 205 (243)
+++++++||.|-+--+.-..+++++.+.
T Consensus 302 ~~l~~~~~D~V~~gR~~ladP~l~~k~~ 329 (343)
T cd04734 302 QALAAGHADMVGMTRAHIADPHLVAKAR 329 (343)
T ss_pred HHHHcCCCCeeeecHHhHhCccHHHHHH
Confidence 6777888999998655333344444443
No 318
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=76.56 E-value=19 Score=33.11 Aligned_cols=83 Identities=22% Similarity=0.240 Sum_probs=49.8
Q ss_pred EEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcc-cCCCcEEeeCCCCCCcCCHHHHH
Q 026125 95 TMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARG-AKRPLLVGDLPFGTYESSTNQAV 173 (243)
Q Consensus 95 tmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rg-a~~~fvVaDmPfgsY~~s~e~Av 173 (243)
..+.+-|..+|..+-++|.|+|=+=|.- .-.||- -..+.+....+...+ .+.+-.++|+|+. +..+.
T Consensus 3 lLvSv~~~~EA~~a~~~gaDiID~K~P~-~GaLGA------~~~~vi~~i~~~~~~~~pvSAtiGDlp~~-----p~~~~ 70 (235)
T PF04476_consen 3 LLVSVRNVEEAEEALAGGADIIDLKNPA-EGALGA------LFPWVIREIVAAVPGRKPVSATIGDLPMK-----PGTAS 70 (235)
T ss_pred eeecCCCHHHHHHHHhCCCCEEEccCCC-CCCCCC------CCHHHHHHHHHHcCCCCceEEEecCCCCC-----chHHH
Confidence 3567789999999999999999554311 112222 123444444444432 4445567999983 23333
Q ss_pred HHHHHHHHHhCCCEEEe
Q 026125 174 DTAVRILKEGGMDAIKL 190 (243)
Q Consensus 174 ~nA~Rl~keaGAdaVKL 190 (243)
..+.... .+|+|-||+
T Consensus 71 ~aa~~~a-~~GvdyvKv 86 (235)
T PF04476_consen 71 LAALGAA-ATGVDYVKV 86 (235)
T ss_pred HHHHHHH-hcCCCEEEE
Confidence 3334444 589999998
No 319
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=76.44 E-value=5.3 Score=39.70 Aligned_cols=90 Identities=18% Similarity=0.162 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
..|+.++++|+|.|.+-|++|. .+-+++-..++++++..+.| +.|.+ |.+.--++.|+...+ +
T Consensus 157 ~~a~~l~~~Gad~I~i~Dt~G~----------l~P~~v~~Lv~~lk~~~~vp-----I~~H~-Hnt~GlA~AN~laAi-e 219 (467)
T PRK14041 157 EFARELVDMGVDSICIKDMAGL----------LTPKRAYELVKALKKKFGVP-----VEVHS-HCTTGLASLAYLAAV-E 219 (467)
T ss_pred HHHHHHHHcCCCEEEECCccCC----------cCHHHHHHHHHHHHHhcCCc-----eEEEe-cCCCCcHHHHHHHHH-H
Confidence 3477788999999999999876 35566666777887766533 12323 356678899999999 5
Q ss_pred hCCCEEEeCCC-----CC--chHHHHHHHHHcCC
Q 026125 183 GGMDAIKLEGG-----SP--SRITAARGIVEAGI 209 (243)
Q Consensus 183 aGAdaVKLEGg-----~~--~~~~~i~~L~~~GI 209 (243)
+||+.|-.-=+ .. -.+.++.+|...|+
T Consensus 220 aGad~vD~sv~~~g~gagN~atE~lv~~L~~~g~ 253 (467)
T PRK14041 220 AGADMFDTAISPFSMGTSQPPFESMYYAFRENGK 253 (467)
T ss_pred hCCCEEEeeccccCCCCCChhHHHHHHHHHhcCC
Confidence 89998864321 11 13445566655444
No 320
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=76.36 E-value=35 Score=32.49 Aligned_cols=99 Identities=21% Similarity=0.216 Sum_probs=58.7
Q ss_pred EecCC-HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcc-cCCCcEEeeCCCCCCcCCHHHHHH
Q 026125 97 VTAYD-YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARG-AKRPLLVGDLPFGTYESSTNQAVD 174 (243)
Q Consensus 97 lTAYD-~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rg-a~~~fvVaDmPfgsY~~s~e~Av~ 174 (243)
-.+-| ...|..+-+||. +|.. .....+.|++-...+.++.- ++.||=|-=+.|.... ..++-
T Consensus 11 ~~vs~~~~LaaAVS~AGg--------LG~l-----a~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~-~~~~~-- 74 (320)
T cd04743 11 TRVSDVAEFAVAVAEGGG--------LPFI-----ALALMRGEQVKALLEETAELLGDKPWGVGILGFVDTE-LRAAQ-- 74 (320)
T ss_pred CCCCCcHHHHHHHHhCCc--------cccC-----CCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCc-chHHH--
Confidence 34445 566777777772 2211 12223556665555666663 5677533223342221 12333
Q ss_pred HHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccC
Q 026125 175 TAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG 216 (243)
Q Consensus 175 nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiG 216 (243)
.+.+.|.++..|-+-+|... . ++.|-++||.|+.|++
T Consensus 75 --l~vi~e~~v~~V~~~~G~P~--~-~~~lk~~Gi~v~~~v~ 111 (320)
T cd04743 75 --LAVVRAIKPTFALIAGGRPD--Q-ARALEAIGISTYLHVP 111 (320)
T ss_pred --HHHHHhcCCcEEEEcCCChH--H-HHHHHHCCCEEEEEeC
Confidence 45556789999999988653 3 6889999999998775
No 321
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=76.23 E-value=24 Score=29.83 Aligned_cols=78 Identities=13% Similarity=0.139 Sum_probs=48.0
Q ss_pred CCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCc
Q 026125 131 TTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIA 210 (243)
Q Consensus 131 dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIP 210 (243)
++..--+.+++.-.+...+.....+++.+... +.++..+...+.+...++|++-+..........++.+.+.|||
T Consensus 8 ~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~ip 82 (270)
T cd01545 8 NPSPGYVSEIQLGALDACRDTGYQLVIEPCDS-----GSPDLAERVRALLQRSRVDGVILTPPLSDNPELLDLLDEAGVP 82 (270)
T ss_pred CCCcccHHHHHHHHHHHHHhCCCeEEEEeCCC-----CchHHHHHHHHHHHHCCCCEEEEeCCCCCccHHHHHHHhcCCC
Confidence 34445566777766666666665656654322 1222344556666567899998876542223446788899999
Q ss_pred eee
Q 026125 211 VMG 213 (243)
Q Consensus 211 V~G 213 (243)
|+-
T Consensus 83 vv~ 85 (270)
T cd01545 83 YVR 85 (270)
T ss_pred EEE
Confidence 864
No 322
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=76.11 E-value=14 Score=34.88 Aligned_cols=90 Identities=14% Similarity=0.193 Sum_probs=59.3
Q ss_pred CcEEEEecCCHHHHHHHHHcCCCEEE-eCc-chhh----------------hhccCCCCc--------cCCHHHHHHHHH
Q 026125 92 EPITMVTAYDYPSAVHLDSAGIDICL-VGD-SAAM----------------VVHGHDTTL--------PITLEEMLVHCR 145 (243)
Q Consensus 92 ~~ItmlTAYD~~sA~iae~AGiDiIL-VGD-Slgm----------------v~lG~~dT~--------~vTldeMi~h~~ 145 (243)
+.+.|..|-+...|.-+.++|+|+|- .|. .-|+ .+.||.+-. ...+|- .+
T Consensus 121 ~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~el----L~ 196 (293)
T PRK04180 121 TVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYEL----VK 196 (293)
T ss_pred CCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHH----HH
Confidence 67789999999999999999999996 433 1111 167775432 233333 34
Q ss_pred HHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 146 AVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 146 aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
.+++..+.|++ .+--|+. .+++++ .+++ +.||++|-+=.+
T Consensus 197 ei~~~~~iPVV--~~AeGGI-~TPeda----a~vm-e~GAdgVaVGSa 236 (293)
T PRK04180 197 EVAELGRLPVV--NFAAGGI-ATPADA----ALMM-QLGADGVFVGSG 236 (293)
T ss_pred HHHHhCCCCEE--EEEeCCC-CCHHHH----HHHH-HhCCCEEEEcHH
Confidence 45555566743 1223555 488888 5666 599999988555
No 323
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=76.10 E-value=13 Score=35.39 Aligned_cols=147 Identities=16% Similarity=0.162 Sum_probs=82.2
Q ss_pred CCHHHHHHhhhCCCcEEE--EecCC---------------HH----HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCH
Q 026125 79 VTLTHLRQKHKNGEPITM--VTAYD---------------YP----SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITL 137 (243)
Q Consensus 79 ~tv~~Lr~~kk~g~~Itm--lTAYD---------------~~----sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTl 137 (243)
.|...++.+++.|---.. +-.|| +. +-..+.++|++=+.+| .++|..++ .-..
T Consensus 161 lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g-----~i~Glge~-~~d~ 234 (371)
T PRK09240 161 LSEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLG-----ALLGLSDW-RTDA 234 (371)
T ss_pred CCHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceE-----EEecCCcc-HHHH
Confidence 567777777777733222 12222 21 2344567898733333 34555552 2223
Q ss_pred HHHHHHHHHHHc-------ccCCCcEE--eeCCCC-CCcCCHHHHHHHH--HHHHHHhCCCEEEeCCCCCchHHHHHHHH
Q 026125 138 EEMLVHCRAVAR-------GAKRPLLV--GDLPFG-TYESSTNQAVDTA--VRILKEGGMDAIKLEGGSPSRITAARGIV 205 (243)
Q Consensus 138 deMi~h~~aV~R-------ga~~~fvV--aDmPfg-sY~~s~e~Av~nA--~Rl~keaGAdaVKLEGg~~~~~~~i~~L~ 205 (243)
-+|+.|.+.+.. ..+-+++. .+ ||. .+..++++.++.. .|++- -=..|.+-||++. .|-
T Consensus 235 ~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~~~~~e~l~~ia~~Rl~l--P~~~i~~s~g~~~------~lr 305 (371)
T PRK09240 235 LMTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEPASIVSDKQLVQLICAFRLFL--PDVEISLSTRESP------EFR 305 (371)
T ss_pred HHHHHHHHHHHHhCCCCceeeecCccccCCC-CCCCCCCCCHHHHHHHHHHHHHHC--cccccEEecCCCH------HHH
Confidence 346777777765 34434443 23 553 3446888887763 45663 3468999999752 244
Q ss_pred HcCCceeeccCCcccccccccCcccc-----------ccCHHhhccc
Q 026125 206 EAGIAVMGHVGLTPQAISVLGGFRPQ-----------GKNVTSAVKV 241 (243)
Q Consensus 206 ~~GIPV~GHiGLtPQ~~~~~GGykvq-----------Gkt~~~A~~l 241 (243)
+..|| +|-..+-.-+....|||--- |++.++-.++
T Consensus 306 d~~~~-~~~~~~~ag~~~~~G~y~~~~~~~~qf~~~~~r~~~~~~~~ 351 (371)
T PRK09240 306 DNLIP-LGITKMSAGSSTQPGGYADDHKELEQFEISDDRSVEEVAAA 351 (371)
T ss_pred HHHHh-hcceeeccCccCCCCCcCCCCCCcCCccCCCCCCHHHHHHH
Confidence 55555 33334444467788999543 7877665443
No 324
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=76.06 E-value=15 Score=31.24 Aligned_cols=72 Identities=15% Similarity=0.184 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-chHHHHHHHHHcCCceee
Q 026125 137 LEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-SRITAARGIVEAGIAVMG 213 (243)
Q Consensus 137 ldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-~~~~~i~~L~~~GIPV~G 213 (243)
+..+..-++..++-.+.-+.+. .+ .+.++++-++..-+++. .|+|+|-+..... .....++.+.++||||+.
T Consensus 13 ~~~~~~g~~~~a~~~g~~~~~~--~~--~~~d~~~q~~~i~~~i~-~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYEVEIV--FD--AQNDPEEQIEQIEQAIS-QGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEE--EE--STTTHHHHHHHHHHHHH-TTESEEEEESSSTTTTHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEe--CC--CCCCHHHHHHHHHHHHH-hcCCEEEecCCCHHHHHHHHHHHhhcCceEEE
Confidence 4455655566666555555554 22 22366777777777774 7899999885543 345678999999999997
No 325
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.04 E-value=36 Score=31.61 Aligned_cols=83 Identities=19% Similarity=0.153 Sum_probs=52.9
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
.+...|+.. ..+++.-+++++...|..+.++|+|.|+.. .++.|++-.-++.+ +.+.++.=
T Consensus 177 ~v~~aR~~~-~~~~~Igvsv~tleea~~A~~~gaDyI~lD--------------~~~~e~l~~~~~~~----~~~i~i~A 237 (277)
T PRK08072 177 AVTSVREKL-GHMVKIEVETETEEQVREAVAAGADIIMFD--------------NRTPDEIREFVKLV----PSAIVTEA 237 (277)
T ss_pred HHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHcCCCEEEEC--------------CCCHHHHHHHHHhc----CCCceEEE
Confidence 344555543 336789999999999999999999999772 35666655434332 22222211
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
-|+ .+++++ ..++ +.|+|+|-.
T Consensus 238 --iGG--It~~ni----~~~a-~~Gvd~IAv 259 (277)
T PRK08072 238 --SGG--ITLENL----PAYG-GTGVDYISL 259 (277)
T ss_pred --ECC--CCHHHH----HHHH-HcCCCEEEE
Confidence 122 355555 5666 589999866
No 326
>PLN02321 2-isopropylmalate synthase
Probab=76.03 E-value=21 Score=36.95 Aligned_cols=89 Identities=8% Similarity=0.010 Sum_probs=59.6
Q ss_pred hhCCCcEEEEecCCHH---------HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCC-cEE
Q 026125 88 HKNGEPITMVTAYDYP---------SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP-LLV 157 (243)
Q Consensus 88 kk~g~~ItmlTAYD~~---------sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~-fvV 157 (243)
++.|..-+..++.|+. .+..+.++|+|.|.+.|++|+. +-+++-...+.+++..+.. -+.
T Consensus 220 k~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~----------~P~~v~~li~~l~~~~~~~~~v~ 289 (632)
T PLN02321 220 RSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYT----------LPSEFGQLIADIKANTPGIENVI 289 (632)
T ss_pred HHcCCceEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCC----------CHHHHHHHHHHHHHhcCCCCCce
Confidence 4444445677775543 5677889999999999998762 3456666667777665431 111
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
+.+ -++.+..-|+.|+...+ ++||+-|..
T Consensus 290 --i~v-H~HND~GlAvANslaAv-~AGA~~Vd~ 318 (632)
T PLN02321 290 --IST-HCQNDLGLSTANTLAGA-HAGARQVEV 318 (632)
T ss_pred --EEE-EeCCCCCHHHHHHHHHH-HhCCCEEEE
Confidence 222 23467778999999988 589998754
No 327
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=75.95 E-value=22 Score=32.75 Aligned_cols=102 Identities=17% Similarity=0.120 Sum_probs=58.8
Q ss_pred HHHHHHHcCCCEEEeCcchh----hhhccCCCCccCCHHHHHHHHHHHHc-----ccCCCcEEeeCCCC-CCcCCHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAA----MVVHGHDTTLPITLEEMLVHCRAVAR-----GAKRPLLVGDLPFG-TYESSTNQAV 173 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlg----mv~lG~~dT~~vTldeMi~h~~aV~R-----ga~~~fvVaDmPfg-sY~~s~e~Av 173 (243)
....+-++|+|.|-+.-|.+ -..++ -|.+|.+...+.+.+ |..-.+-+.| |+ .|..+++..+
T Consensus 79 ~~~~A~~~g~~~i~i~~~~S~~h~~~~~~------~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d--~~~~~r~~~~~~~ 150 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKGSLKHCTEQLR------KTPEEHFADIREVIEYAIKNGIEVNIYLED--WSNGMRDSPDYVF 150 (280)
T ss_pred HHHHHHHCCCCEEEEEEeCCHHHHHHHHC------cCHHHHHHHHHHHHHHHHhCCCEEEEEEEe--CCCCCcCCHHHHH
Confidence 45556678999774332222 12222 356666544444333 2222233355 44 4566888888
Q ss_pred HHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc--CCceeec
Q 026125 174 DTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA--GIAVMGH 214 (243)
Q Consensus 174 ~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~--GIPV~GH 214 (243)
+.+.++. +.|++.|.|-|-.. ....+++.|.+. ++|+--|
T Consensus 151 ~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H 197 (280)
T cd07945 151 QLVDFLS-DLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFH 197 (280)
T ss_pred HHHHHHH-HcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEE
Confidence 8877776 68999999998732 344556666654 3555444
No 328
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=75.87 E-value=67 Score=31.37 Aligned_cols=112 Identities=11% Similarity=0.198 Sum_probs=71.7
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE--EeCcchhhh---hcc---CC---CCccCCHHHHHHHHHHHHc
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC--LVGDSAAMV---VHG---HD---TTLPITLEEMLVHCRAVAR 149 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI--LVGDSlgmv---~lG---~~---dT~~vTldeMi~h~~aV~R 149 (243)
+.-.+.+.+.|-++-+..+|+...|.+|.+||++.| .||= +-.. -.| ++ |.+-....+|. +..++
T Consensus 144 i~A~~~L~~~GI~~n~TlvFS~~QA~aaaeAGa~~ISPfVgR-i~dw~~~~~g~~~~~~~~dpGv~~v~~i~---~~~~~ 219 (391)
T PRK12309 144 IKAAEVLEKEGIHCNLTLLFGFHQAIACAEAGVTLISPFVGR-ILDWYKKETGRDSYPGAEDPGVQSVTQIY---NYYKK 219 (391)
T ss_pred HHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEeecch-hhhhhhhccCCCccccccchHHHHHHHHH---HHHHh
Confidence 555667788999999999999999999999999998 5772 1111 022 12 22222222322 22222
Q ss_pred -ccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeecc
Q 026125 150 -GAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHV 215 (243)
Q Consensus 150 -ga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHi 215 (243)
+.+..++.+ || .|+++..+ -+|||.+-+- +.+.+.|.+.+-+|.-.+
T Consensus 220 ~~~~T~Im~A-----Sf-Rn~~~v~~-------laG~d~~Ti~------p~ll~~L~~~~~~~~~~l 267 (391)
T PRK12309 220 FGYKTEVMGA-----SF-RNIGEIIE-------LAGCDLLTIS------PKLLEQLRSTEAELPRKL 267 (391)
T ss_pred cCCCcEEEec-----cc-CCHHHHHH-------HHCCCeeeCC------HHHHHHHHhcCCCcCccc
Confidence 333333223 67 58888853 2699999774 566788998888876664
No 329
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=75.86 E-value=79 Score=30.58 Aligned_cols=121 Identities=14% Similarity=0.114 Sum_probs=83.5
Q ss_pred HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEe
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVG 158 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVa 158 (243)
|++.++++--+-..++|++.+++ +||+.+.++||--.....-. ..++.+...++..++-++ -| |..
T Consensus 8 L~~A~~~~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~--------~g~~~~~~~~~~~ae~~~~VP-Val 78 (347)
T TIGR01521 8 LDHAAEFGYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRGARSY--------AGAPFLRHLILAAIEEYPHIP-VVM 78 (347)
T ss_pred HHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcchhhh--------CCHHHHHHHHHHHHHhCCCCc-EEE
Confidence 55667788899999999999986 56888999987332222222 234566667777777665 45 778
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC--------------chHHHHHHHHHcCCceeeccCCcccc
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP--------------SRITAARGIVEAGIAVMGHVGLTPQA 221 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~--------------~~~~~i~~L~~~GIPV~GHiGLtPQ~ 221 (243)
-|..+ .+.+.. .+.+ ++|...|.+.|+.. .+-.+++.--..||+|=|=||-++..
T Consensus 79 HLDHg---~~~e~i----~~Ai-~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~ 147 (347)
T TIGR01521 79 HQDHG---NSPATC----QRAI-QLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSL 147 (347)
T ss_pred ECCCC---CCHHHH----HHHH-HcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccc
Confidence 88884 245554 4556 48999999988852 12345566667899998888887643
No 330
>PRK15108 biotin synthase; Provisional
Probab=75.70 E-value=31 Score=32.59 Aligned_cols=92 Identities=17% Similarity=0.127 Sum_probs=53.5
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
|+.+.+.|++=+..|- |..+.....++.+..-.+.+++ .... +++- . ++ .+.++. +.++++|
T Consensus 85 a~~~~~~G~~~i~i~~-------~g~~p~~~~~e~i~~~i~~ik~-~~i~-v~~s--~-G~-ls~e~l-----~~LkeAG 146 (345)
T PRK15108 85 ARKAKAAGSTRFCMGA-------AWKNPHERDMPYLEQMVQGVKA-MGLE-TCMT--L-GT-LSESQA-----QRLANAG 146 (345)
T ss_pred HHHHHHcCCCEEEEEe-------cCCCCCcchHHHHHHHHHHHHh-CCCE-EEEe--C-Cc-CCHHHH-----HHHHHcC
Confidence 4556678988664431 1112234567777777777764 2222 2222 3 24 464554 4566899
Q ss_pred CCEEEe--C----CC--------CCchHHHHHHHHHcCCceeec
Q 026125 185 MDAIKL--E----GG--------SPSRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 185 AdaVKL--E----Gg--------~~~~~~~i~~L~~~GIPV~GH 214 (243)
+|.+.+ | .+ .+....+++.+.++|++|+.|
T Consensus 147 ld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg 190 (345)
T PRK15108 147 LDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSG 190 (345)
T ss_pred CCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeE
Confidence 996655 1 11 122456678888899999966
No 331
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=75.49 E-value=43 Score=27.32 Aligned_cols=96 Identities=20% Similarity=0.262 Sum_probs=55.2
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
....+++.+. ...+..+++.+...+..+.+.|+|.|++|-.... ...+.. .+..++.+ +.+++..+.| +++
T Consensus 84 ~~~~~~~~~~-~~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~p-v~a 155 (196)
T cd00564 84 PVAEARALLG-PDLIIGVSTHSLEEALRAEELGADYVGFGPVFPT--PTKPGAGPPLGLELL----REIAELVEIP-VVA 155 (196)
T ss_pred CHHHHHHHcC-CCCEEEeeCCCHHHHHHHhhcCCCEEEECCccCC--CCCCCCCCCCCHHHH----HHHHHhCCCC-EEE
Confidence 4555666543 3456677888988999999999999987621100 001111 23344443 3444444455 455
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
+ |+- +.+ |+.+++ +.|+++|-+-++
T Consensus 156 ~---GGi--~~~----~i~~~~-~~Ga~~i~~g~~ 180 (196)
T cd00564 156 I---GGI--TPE----NAAEVL-AAGADGVAVISA 180 (196)
T ss_pred E---CCC--CHH----HHHHHH-HcCCCEEEEehH
Confidence 5 343 444 345556 589999977543
No 332
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=75.47 E-value=63 Score=29.27 Aligned_cols=102 Identities=23% Similarity=0.231 Sum_probs=67.0
Q ss_pred HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
+..+.++..-|.++..-|...|. .+-+.|++.|=+--.- +. -.+-.+++++-.++.+|-+
T Consensus 6 ~~~~l~~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~s-----------p~----a~e~I~~l~~~~p~~lIGA- 69 (211)
T COG0800 6 ILSKLKAQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRT-----------PA----ALEAIRALAKEFPEALIGA- 69 (211)
T ss_pred HHHHHHHCCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCC-----------CC----HHHHHHHHHHhCcccEEcc-
Confidence 34444566678888888876654 4556799988443111 11 1333467777777665434
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceee
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMG 213 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~G 213 (243)
|+- .|++++ .+.. ++||+-+---|- .++++++..+.|||+|=
T Consensus 70 ---GTV-L~~~q~----~~a~-~aGa~fiVsP~~---~~ev~~~a~~~~ip~~P 111 (211)
T COG0800 70 ---GTV-LNPEQA----RQAI-AAGAQFIVSPGL---NPEVAKAANRYGIPYIP 111 (211)
T ss_pred ---ccc-cCHHHH----HHHH-HcCCCEEECCCC---CHHHHHHHHhCCCcccC
Confidence 456 688888 3444 699999865444 36779999999999874
No 333
>PRK08227 autoinducer 2 aldolase; Validated
Probab=75.42 E-value=27 Score=32.36 Aligned_cols=90 Identities=13% Similarity=0.054 Sum_probs=58.5
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc---CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA---KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga---~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
|-+.|.|.+.+- +.+| .+ .=.+|+.....|++-+ ..|+++ =.|-|..-.+..+.+..|.|+--|-|
T Consensus 103 AvrlGAdAV~~~-----v~~G-s~----~E~~~l~~l~~v~~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELG 171 (264)
T PRK08227 103 AVRLNACAVAAQ-----VFIG-SE----YEHQSIKNIIQLVDAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMG 171 (264)
T ss_pred HHHCCCCEEEEE-----EecC-CH----HHHHHHHHHHHHHHHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHc
Confidence 447788977653 3344 11 2256776666666544 356555 45887765566679999999999999
Q ss_pred CCEEEeCCCCCchHHHHHHHHHcC-Ccee
Q 026125 185 MDAIKLEGGSPSRITAARGIVEAG-IAVM 212 (243)
Q Consensus 185 AdaVKLEGg~~~~~~~i~~L~~~G-IPV~ 212 (243)
||.||..=-. .. .+.+++++ +||.
T Consensus 172 ADiVK~~y~~---~~-f~~vv~a~~vPVv 196 (264)
T PRK08227 172 AQIIKTYYVE---EG-FERITAGCPVPIV 196 (264)
T ss_pred CCEEecCCCH---HH-HHHHHHcCCCcEE
Confidence 9999997432 23 35566544 7765
No 334
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=75.35 E-value=55 Score=28.49 Aligned_cols=130 Identities=18% Similarity=0.089 Sum_probs=72.2
Q ss_pred HHHHHHhhhCC--CcEEEEecCCHHHHHHHHHcCCCEEEeCcchhh----hhccCCCCccCCHHHHHHHHHHHHcccCCC
Q 026125 81 LTHLRQKHKNG--EPITMVTAYDYPSAVHLDSAGIDICLVGDSAAM----VVHGHDTTLPITLEEMLVHCRAVARGAKRP 154 (243)
Q Consensus 81 v~~Lr~~kk~g--~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgm----v~lG~~dT~~vTldeMi~h~~aV~Rga~~~ 154 (243)
...++...+.+ .++++++-.....+..+.++|+|.|.+.++..- ..++ -+..-.+++++...+..++. ...
T Consensus 54 ~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~--~~~~~~~~~~~~~i~~a~~~-G~~ 130 (265)
T cd03174 54 WEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEVRIFDSASETHSRKNLN--KSREEDLENAEEAIEAAKEA-GLE 130 (265)
T ss_pred HHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEEEEEEecCHHHHHHHhC--CCHHHHHHHHHHHHHHHHHC-CCe
Confidence 34455554444 567555555577788899999999977665531 1111 11222455666555555442 333
Q ss_pred cEEeeC-CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHcC--Cceeecc
Q 026125 155 LLVGDL-PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEAG--IAVMGHV 215 (243)
Q Consensus 155 fvVaDm-PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~G--IPV~GHi 215 (243)
+..++ .......++++..+-+.++. +.|++.|.+-|-.. ....+++.+.+.- +|+--|.
T Consensus 131 -v~~~~~~~~~~~~~~~~l~~~~~~~~-~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~ 197 (265)
T cd03174 131 -VEGSLEDAFGCKTDPEYVLEVAKALE-EAGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHT 197 (265)
T ss_pred -EEEEEEeecCCCCCHHHHHHHHHHHH-HcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 34444 23220147777766665555 79999999976522 2334455554432 6666664
No 335
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=75.32 E-value=30 Score=32.08 Aligned_cols=75 Identities=25% Similarity=0.258 Sum_probs=50.8
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC-CcEEeeCCCCCCcCCHHHHHHHHHHHHHHh
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR-PLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~-~fvVaDmPfgsY~~s~e~Av~nA~Rl~kea 183 (243)
.+...+.|+|-|.+..|-|-. -..|.||-..-.+.+++.+.. ..||+.. |+ .|.+++++.|... ++.
T Consensus 31 v~~li~~Gv~gi~~~GttGE~-------~~Ls~eEr~~v~~~~v~~~~grvpviaG~--g~--~~t~eai~lak~a-~~~ 98 (299)
T COG0329 31 VEFLIAAGVDGLVVLGTTGES-------PTLTLEERKEVLEAVVEAVGGRVPVIAGV--GS--NSTAEAIELAKHA-EKL 98 (299)
T ss_pred HHHHHHcCCCEEEECCCCccc-------hhcCHHHHHHHHHHHHHHHCCCCcEEEec--CC--CcHHHHHHHHHHH-Hhc
Confidence 345668899988655455432 357889977666776666642 3366654 33 3789999998654 579
Q ss_pred CCCEEEeC
Q 026125 184 GMDAIKLE 191 (243)
Q Consensus 184 GAdaVKLE 191 (243)
|||++-+=
T Consensus 99 Gad~il~v 106 (299)
T COG0329 99 GADGILVV 106 (299)
T ss_pred CCCEEEEe
Confidence 99999763
No 336
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=75.19 E-value=19 Score=33.32 Aligned_cols=81 Identities=22% Similarity=0.315 Sum_probs=48.1
Q ss_pred CcEEeeCC-CCC-----------CcCCHHHHHHH---HHHHHHHhCCCEEEeCCCCCc--hHHHHHHHHHc--CCceeec
Q 026125 154 PLLVGDLP-FGT-----------YESSTNQAVDT---AVRILKEGGMDAIKLEGGSPS--RITAARGIVEA--GIAVMGH 214 (243)
Q Consensus 154 ~fvVaDmP-fgs-----------Y~~s~e~Av~n---A~Rl~keaGAdaVKLEGg~~~--~~~~i~~L~~~--GIPV~GH 214 (243)
.+|.++++ +|. |..+.++..+. -++.+.++|+|.+-+|--... ...+++++.+. ++||+--
T Consensus 108 ~~VaGsiGP~g~~l~~~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is 187 (304)
T PRK09485 108 PLVAGSVGPYGAYLADGSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLS 187 (304)
T ss_pred ceEEEecCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 67889984 443 33355555433 244555799999999965432 23345555545 8999965
Q ss_pred cCCcccccccccCccccccCHHhhcc
Q 026125 215 VGLTPQAISVLGGFRPQGKNVTSAVK 240 (243)
Q Consensus 215 iGLtPQ~~~~~GGykvqGkt~~~A~~ 240 (243)
+=+.. +|.-.-|.+.+++..
T Consensus 188 ~~~~~------~g~l~~G~~~~~~~~ 207 (304)
T PRK09485 188 FTLRD------GTHISDGTPLAEAAA 207 (304)
T ss_pred EEeCC------CCcCCCCCCHHHHHH
Confidence 54322 344455666666544
No 337
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=75.04 E-value=32 Score=31.66 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=59.5
Q ss_pred CCCHHHHHHhhhCCCcEEEEe---cCCHHHHHHH----HHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcc
Q 026125 78 RVTLTHLRQKHKNGEPITMVT---AYDYPSAVHL----DSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARG 150 (243)
Q Consensus 78 ~~tv~~Lr~~kk~g~~ItmlT---AYD~~sA~ia----e~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rg 150 (243)
..+|..+++...+..|++..- .|+...+..+ ..+|+|.+=||- +|-.+. .-..|.|-.-+++|+.-
T Consensus 39 ~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvGl------~g~~~~-~~a~e~l~~v~~av~~~ 111 (235)
T PF04476_consen 39 PWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYVKVGL------FGCKDY-DEAIEALEAVVRAVKDF 111 (235)
T ss_pred HHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEec------CCCCCH-HHHHHHHHHHHHHHhhh
Confidence 457888888865556766543 3555555442 346999999982 222222 11233343444666655
Q ss_pred cCCCcEEeeCCCCCCc----CCHHHHHHHHHHHHHHhCCCEEEeCC
Q 026125 151 AKRPLLVGDLPFGTYE----SSTNQAVDTAVRILKEGGMDAIKLEG 192 (243)
Q Consensus 151 a~~~fvVaDmPfgsY~----~s~e~Av~nA~Rl~keaGAdaVKLEG 192 (243)
.++..+|+.+ |..|+ .+|.+. ..+.+++|++++.|.=
T Consensus 112 ~~~~~vVAv~-yAD~~r~~~~~p~~l----~~~a~~aG~~gvMlDT 152 (235)
T PF04476_consen 112 DPDKKVVAVG-YADAQRVGSISPLDL----PEIAAEAGFDGVMLDT 152 (235)
T ss_pred CCCcEEEEEE-ecchhhhcCCCHHHH----HHHHHHcCCCEEEEec
Confidence 5566666443 32332 145555 3455689999999853
No 338
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=75.02 E-value=19 Score=30.47 Aligned_cols=73 Identities=11% Similarity=0.046 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeec
Q 026125 135 ITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 135 vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GH 214 (243)
--+.+++..++...+..+..+++.+.. +.++-.+...+++...++|+|-+.+.... ...++.+.++||||+--
T Consensus 17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~~~~~~~~dgiii~~~~~~-~~~~~~~~~~~ipvV~~ 89 (270)
T cd06294 17 PFFIEVLRGISAVANENGYDISLATGK------NEEELLEEVKKMIQQKRVDGFILLYSRED-DPIIDYLKEEKFPFVVI 89 (270)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEecCC------CcHHHHHHHHHHHHHcCcCEEEEecCcCC-cHHHHHHHhcCCCEEEE
Confidence 345677887777777666665554322 12233344455665556999999765322 34478899999998753
No 339
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=75.00 E-value=25 Score=27.92 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=47.4
Q ss_pred hCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEE-eeCCCCCCc
Q 026125 89 KNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLV-GDLPFGTYE 166 (243)
Q Consensus 89 k~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvV-aDmPfgsY~ 166 (243)
+.|-++. +.+|....+.. ..-.+|+||+| -+..++.+.+.+..+ .|+++ -...||.+
T Consensus 29 ~~gi~~~-V~A~~~~~~~~-~~~~~DviLl~------------------Pqi~~~~~~i~~~~~~~pV~~I~~~~Yg~~- 87 (106)
T PRK10499 29 KYEVPVI-IEAFPETLAGE-KGQNADVVLLG------------------PQIAYMLPEIQRLLPNKPVEVIDSLLYGKV- 87 (106)
T ss_pred HCCCCEE-EEEeecchhhc-cccCCCEEEEC------------------HHHHHHHHHHHhhcCCCCEEEEChHhhhcC-
Confidence 4455543 55644333322 23356999988 234555666665544 45444 56678777
Q ss_pred CCHHHHHHHHHHHHHHhCC
Q 026125 167 SSTNQAVDTAVRILKEGGM 185 (243)
Q Consensus 167 ~s~e~Av~nA~Rl~keaGA 185 (243)
+.+..+.-|..+++++|+
T Consensus 88 -dg~~vl~~a~~~~~~~~~ 105 (106)
T PRK10499 88 -DGLGVLKAAVAAIKKAAA 105 (106)
T ss_pred -CHHHHHHHHHHHHHHhcc
Confidence 789999999999998875
No 340
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=74.91 E-value=49 Score=32.12 Aligned_cols=97 Identities=15% Similarity=0.098 Sum_probs=64.4
Q ss_pred CCCHHHHHHhhh-CCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 78 RVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 78 ~~tv~~Lr~~kk-~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
.+|..||..+.+ -+-||.+=.+-+...|+.+.++|+|.|.|+..-|- ..|..+-|++-+.+..++|. ++..|
T Consensus 210 ~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGr----qld~~~~t~~~L~ei~~av~---~~~~v 282 (367)
T PLN02493 210 TLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGAR----QLDYVPATISALEEVVKATQ---GRIPV 282 (367)
T ss_pred CCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCC----CCCCchhHHHHHHHHHHHhC---CCCeE
Confidence 467888766532 34688888889999999999999999987755442 33555555555444444442 23347
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
++|=.+ . +..+. .+.+ ..||++|-+
T Consensus 283 i~dGGI---r-~G~Dv----~KAL-ALGA~aV~i 307 (367)
T PLN02493 283 FLDGGV---R-RGTDV----FKAL-ALGASGIFI 307 (367)
T ss_pred EEeCCc---C-cHHHH----HHHH-HcCCCEEEE
Confidence 888555 2 44566 3445 479999977
No 341
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=74.91 E-value=70 Score=29.49 Aligned_cols=124 Identities=16% Similarity=0.095 Sum_probs=68.5
Q ss_pred CCcEEEEecCCHHHHHHH------HHcCCCEE--EeCcchhhhhccCCCCcc-CCHHHHHHHHHHHHcccCCCcE--Eee
Q 026125 91 GEPITMVTAYDYPSAVHL------DSAGIDIC--LVGDSAAMVVHGHDTTLP-ITLEEMLVHCRAVARGAKRPLL--VGD 159 (243)
Q Consensus 91 g~~ItmlTAYD~~sA~ia------e~AGiDiI--LVGDSlgmv~lG~~dT~~-vTldeMi~h~~aV~Rga~~~fv--VaD 159 (243)
=+++.-+||.|.....+- .++|++=| |.||.....-...+.... -.--++++. +++-.+..|- ++-
T Consensus 60 ~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~---i~~~~~~~f~igva~ 136 (281)
T TIGR00677 60 VETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKY---IRSKYGDYFCIGVAG 136 (281)
T ss_pred CCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHH---HHHhCCCceEEEEEE
Confidence 388999999999865444 46799944 699986421111111111 113445554 4332222233 377
Q ss_pred CCCCCCcC-CHHHHHHHHHHHHHHhCCCEEEeCCCCC--chHHHHHHHHHcC--CceeeccCCccc
Q 026125 160 LPFGTYES-STNQAVDTAVRILKEGGMDAIKLEGGSP--SRITAARGIVEAG--IAVMGHVGLTPQ 220 (243)
Q Consensus 160 mPfgsY~~-s~e~Av~nA~Rl~keaGAdaVKLEGg~~--~~~~~i~~L~~~G--IPV~GHiGLtPQ 220 (243)
-|.+..+. +.+.-++.-.+-+ ++||+-+.-.=.-+ .....++.+.++| +|| ..|++|=
T Consensus 137 ~Pe~Hp~~~~~~~d~~~L~~Ki-~aGA~f~iTQ~~Fd~~~~~~f~~~~~~~gi~~PI--i~GI~pi 199 (281)
T TIGR00677 137 YPEGHPEAESVELDLKYLKEKV-DAGADFIITQLFYDVDNFLKFVNDCRAIGIDCPI--VPGIMPI 199 (281)
T ss_pred CCCCCCCCCCHHHHHHHHHHHH-HcCCCEeeccceecHHHHHHHHHHHHHcCCCCCE--Eeecccc
Confidence 88875543 3333244444444 58999876554432 1234455566664 566 6788884
No 342
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=74.89 E-value=7.3 Score=36.32 Aligned_cols=63 Identities=19% Similarity=0.295 Sum_probs=46.6
Q ss_pred HHHHHHHcCCCEEEe---CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLV---GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 104 sA~iae~AGiDiILV---GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
-||++.+.|.|+|=+ ||- ..-+.|.++++.|+|++.=|= ..+.+++++-....+
T Consensus 171 aaRlaaelGADIiK~~ytg~~--------------------e~F~~vv~~~~vpVviaGG~k---~~~~~~~l~~~~~ai 227 (265)
T COG1830 171 AARLAAELGADIIKTKYTGDP--------------------ESFRRVVAACGVPVVIAGGPK---TETEREFLEMVTAAI 227 (265)
T ss_pred HHHHHHHhcCCeEeecCCCCh--------------------HHHHHHHHhCCCCEEEeCCCC---CCChHHHHHHHHHHH
Confidence 477999999999954 432 222567789999988887655 236788888888888
Q ss_pred HHhCCCEEEe
Q 026125 181 KEGGMDAIKL 190 (243)
Q Consensus 181 keaGAdaVKL 190 (243)
++||.++-+
T Consensus 228 -~aGa~G~~~ 236 (265)
T COG1830 228 -EAGAMGVAV 236 (265)
T ss_pred -HccCcchhh
Confidence 578888755
No 343
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=74.82 E-value=13 Score=38.00 Aligned_cols=90 Identities=20% Similarity=0.246 Sum_probs=61.6
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHh
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~kea 183 (243)
.|+.+.++|+|.|.+-|+.|. .+-.++-..++++++..+.| +.|.+ |.+..-|+.|....+ ++
T Consensus 154 ~~~~~~~~Gad~I~i~Dt~G~----------~~P~~v~~lv~~lk~~~~~p-----i~~H~-Hnt~Gla~An~laAv-ea 216 (582)
T TIGR01108 154 LAEELLEMGVDSICIKDMAGI----------LTPKAAYELVSALKKRFGLP-----VHLHS-HATTGMAEMALLKAI-EA 216 (582)
T ss_pred HHHHHHHcCCCEEEECCCCCC----------cCHHHHHHHHHHHHHhCCCc-----eEEEe-cCCCCcHHHHHHHHH-Hh
Confidence 477788899999999998865 45566667777887766533 12323 357778999999999 59
Q ss_pred CCCEEEeCCC-----C--CchHHHHHHHHHcCCc
Q 026125 184 GMDAIKLEGG-----S--PSRITAARGIVEAGIA 210 (243)
Q Consensus 184 GAdaVKLEGg-----~--~~~~~~i~~L~~~GIP 210 (243)
||+.|-.-=+ . .-...++..|...|+.
T Consensus 217 Ga~~vd~ai~GlG~~tGn~~le~vv~~L~~~g~~ 250 (582)
T TIGR01108 217 GADGIDTAISSMSGGTSHPPTETMVAALRGTGYD 250 (582)
T ss_pred CCCEEEeccccccccccChhHHHHHHHHHhcCCC
Confidence 9998875311 1 1134556667666654
No 344
>PRK08508 biotin synthase; Provisional
Probab=74.80 E-value=37 Score=30.95 Aligned_cols=91 Identities=22% Similarity=0.211 Sum_probs=52.0
Q ss_pred HHHHcCCCEE-EeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 026125 107 HLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (243)
Q Consensus 107 iae~AGiDiI-LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGA 185 (243)
.+.+.|+.-+ ++.+.. |+++ -.+|-+++-++.|++-.+.--+.+-. ++ .+.|+. +.++++|+
T Consensus 51 ~a~~~g~~~~~lv~sg~-----~~~~---~~~e~~~ei~~~ik~~~p~l~i~~s~---G~-~~~e~l-----~~Lk~aGl 113 (279)
T PRK08508 51 MAKANGALGFCLVTSGR-----GLDD---KKLEYVAEAAKAVKKEVPGLHLIACN---GT-ASVEQL-----KELKKAGI 113 (279)
T ss_pred HHHHCCCCEEEEEeccC-----CCCc---ccHHHHHHHHHHHHhhCCCcEEEecC---CC-CCHHHH-----HHHHHcCC
Confidence 3444577654 444333 2333 26777888888887654332233322 44 354544 56668999
Q ss_pred CEEEe--CCCC------------CchHHHHHHHHHcCCceeec
Q 026125 186 DAIKL--EGGS------------PSRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 186 daVKL--EGg~------------~~~~~~i~~L~~~GIPV~GH 214 (243)
|.+.+ |.+. +....+++...+.||+|+.+
T Consensus 114 d~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg 156 (279)
T PRK08508 114 FSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSG 156 (279)
T ss_pred CEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecce
Confidence 99884 2221 11233566788999999774
No 345
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=74.72 E-value=31 Score=28.99 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeec
Q 026125 136 TLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 136 TldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GH 214 (243)
-+.+++......++-.+.-+++.+.. | +++.-.+...+++ +.++|+|-+..+.......++.+.++||||+.-
T Consensus 13 ~~~~~~~~i~~~~~~~g~~~~~~~~~---~--~~~~~~~~~~~l~-~~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~ 85 (266)
T cd06282 13 VFAECVQGIQEEARAAGYSLLLATTD---Y--DAEREADAVETLL-RQRVDGLILTVADAATSPALDLLDAERVPYVLA 85 (266)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEeeCC---C--CHHHHHHHHHHHH-hcCCCEEEEecCCCCchHHHHHHhhCCCCEEEE
Confidence 45567777776666666566666542 2 3344334444444 568999998655332234568889999997543
No 346
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=74.66 E-value=30 Score=29.63 Aligned_cols=75 Identities=13% Similarity=0.054 Sum_probs=48.6
Q ss_pred cCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-hHHHHHHHHHcCCcee
Q 026125 134 PITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-RITAARGIVEAGIAVM 212 (243)
Q Consensus 134 ~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-~~~~i~~L~~~GIPV~ 212 (243)
.--+.+++...+...+..+..+++.+... + +++.-.+...+++ ..++|++-+...... ....++.+.++||||+
T Consensus 12 ~~~~~~~~~g~~~~~~~~g~~v~~~~~~~--~--~~~~~~~~i~~l~-~~~vdgiii~~~~~~~~~~~l~~~~~~~ipvV 86 (271)
T cd06312 12 DPFWTVVKNGAEDAAKDLGVDVEYRGPET--F--DVADMARLIEAAI-AAKPDGIVVTIPDPDALDPAIKRAVAAGIPVI 86 (271)
T ss_pred CcHHHHHHHHHHHHHHHhCCEEEEECCCC--C--CHHHHHHHHHHHH-HhCCCEEEEeCCChHHhHHHHHHHHHCCCeEE
Confidence 34456677777777777777766665432 2 4554444444555 468999999765321 2345688899999998
Q ss_pred e
Q 026125 213 G 213 (243)
Q Consensus 213 G 213 (243)
-
T Consensus 87 ~ 87 (271)
T cd06312 87 S 87 (271)
T ss_pred E
Confidence 6
No 347
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=74.58 E-value=32 Score=29.06 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=46.2
Q ss_pred CCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCc
Q 026125 131 TTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIA 210 (243)
Q Consensus 131 dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIP 210 (243)
+...--+.+++.......+-.+.-+++.|-. .++++..+....++ ..++|+|-+.+... ....++.+.+.|||
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~l~-~~~vdgiii~~~~~-~~~~~~~l~~~~iP 80 (268)
T cd06273 8 TLDNAIFARVIQAFQETLAAHGYTLLVASSG-----YDLDREYAQARKLL-ERGVDGLALIGLDH-SPALLDLLARRGVP 80 (268)
T ss_pred CCCCchHHHHHHHHHHHHHHCCCEEEEecCC-----CCHHHHHHHHHHHH-hcCCCEEEEeCCCC-CHHHHHHHHhCCCC
Confidence 3333445666666665555555555554421 24555555555555 45789988876543 34556778888999
Q ss_pred eeec
Q 026125 211 VMGH 214 (243)
Q Consensus 211 V~GH 214 (243)
|+.-
T Consensus 81 vv~~ 84 (268)
T cd06273 81 YVAT 84 (268)
T ss_pred EEEE
Confidence 8764
No 348
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=74.56 E-value=12 Score=36.39 Aligned_cols=50 Identities=30% Similarity=0.561 Sum_probs=31.3
Q ss_pred ccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC-------------CchHHHHHHHHHcCCce
Q 026125 150 GAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-------------PSRITAARGIVEAGIAV 211 (243)
Q Consensus 150 ga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~-------------~~~~~~i~~L~~~GIPV 211 (243)
|.+.| +|+|.=| .| .-| ...+ +. +|.|.|--|. +....++++..+.|||+
T Consensus 72 g~~iP-lVADIHF-d~----~lA----l~a~-~~-v~kiRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipI 134 (359)
T PF04551_consen 72 GSPIP-LVADIHF-DY----RLA----LEAI-EA-VDKIRINPGNIVDEFQEELGSIREKVKEVVEAAKERGIPI 134 (359)
T ss_dssp T-SS--EEEEEST-TC----HHH----HHHH-HC--SEEEE-TTTSS----SS-SS-HHHHHHHHHHHHHHT-EE
T ss_pred CCCCC-eeeecCC-CH----HHH----HHHH-HH-hCeEEECCCcccccccccccchHHHHHHHHHHHHHCCCCE
Confidence 48877 7999999 67 334 3345 46 9999987553 23456677888899997
No 349
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=74.43 E-value=31 Score=32.22 Aligned_cols=106 Identities=15% Similarity=0.243 Sum_probs=69.4
Q ss_pred cEEEE--ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCC-cEE-eeCCC------
Q 026125 93 PITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP-LLV-GDLPF------ 162 (243)
Q Consensus 93 ~Itml--TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~-fvV-aDmPf------ 162 (243)
|+++= -+.|+...+.+=++||+-+.+-.| ..++||=+..++.|.+-+... .-| +-+..
T Consensus 79 PV~lHLDHg~~~e~i~~ai~~GftSVM~DgS------------~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed 146 (285)
T PRK07709 79 PVAIHLDHGSSFEKCKEAIDAGFTSVMIDAS------------HHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQED 146 (285)
T ss_pred cEEEECCCCCCHHHHHHHHHcCCCEEEEeCC------------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccC
Confidence 65443 467888888888999997776433 468999999999988744321 111 11111
Q ss_pred ------CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC---------CCchHHHHHHHHHc-CCceeecc
Q 026125 163 ------GTYESSTNQAVDTAVRILKEGGMDAIKLEGG---------SPSRITAARGIVEA-GIAVMGHV 215 (243)
Q Consensus 163 ------gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg---------~~~~~~~i~~L~~~-GIPV~GHi 215 (243)
.-| ++||+| .+|+++.|+|++=+.=| .....+.++.|.++ +||.+=|=
T Consensus 147 ~~~~~~~~y-T~peeA----~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHG 210 (285)
T PRK07709 147 DVIAEGVIY-ADPAEC----KHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHG 210 (285)
T ss_pred CcccccccC-CCHHHH----HHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeC
Confidence 116 699999 68999999998765433 22233445555554 89998883
No 350
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=74.35 E-value=32 Score=30.47 Aligned_cols=73 Identities=14% Similarity=-0.008 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHh--CCCEEEeCCCCCchHHHHHHHHHcCCceee
Q 026125 136 TLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG--GMDAIKLEGGSPSRITAARGIVEAGIAVMG 213 (243)
Q Consensus 136 TldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~kea--GAdaVKLEGg~~~~~~~i~~L~~~GIPV~G 213 (243)
-+.+++...+...+...--+++.+.. + +.+.-. +..+.+... ++|+|-+..........++.+.++||||+-
T Consensus 14 ~~~~~~~gi~~~~~~~g~~v~~~~~~---~--~~~~~~-~~i~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~giPvV~ 87 (305)
T cd06324 14 FWNSVARFMQAAADDLGIELEVLYAE---R--DRFLML-QQARTILQRPDKPDALIFTNEKSVAPELLRLAEGAGVKLFL 87 (305)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCC---C--CHHHHH-HHHHHHHHhccCCCEEEEcCCccchHHHHHHHHhCCCeEEE
Confidence 45667776766666555555566532 2 333332 334444456 899999976543344557889999999986
Q ss_pred c
Q 026125 214 H 214 (243)
Q Consensus 214 H 214 (243)
.
T Consensus 88 ~ 88 (305)
T cd06324 88 V 88 (305)
T ss_pred E
Confidence 4
No 351
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=74.21 E-value=25 Score=33.40 Aligned_cols=100 Identities=22% Similarity=0.225 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCC-cCCHHHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTY-ESSTNQAVDTAVRIL 180 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY-~~s~e~Av~nA~Rl~ 180 (243)
..-|++++++|+.+.+ |+ .+ .++.+. +...--+.|++-+|..++++++.-... ..+++++ +.+.+.+
T Consensus 80 ~~La~~a~~~G~~~~~-Gs-~~---~~~~~~------~~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~-~~~~~~~ 147 (352)
T PRK05437 80 RKLAEAAEELGIAMGV-GS-QR---AALKDP------ELADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEA-QRAVEMI 147 (352)
T ss_pred HHHHHHHHHcCCCeEe-cc-cH---hhccCh------hhHHHHHHHHHHCCCceEEeecCccccCCCCHHHH-HHHHHhc
Confidence 5678899999987754 42 11 122222 234445667888877777887644222 2245554 3344555
Q ss_pred HHhCCCEEEe---------CCCCCc--hHHHHHHHHHc-CCceeec
Q 026125 181 KEGGMDAIKL---------EGGSPS--RITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 181 keaGAdaVKL---------EGg~~~--~~~~i~~L~~~-GIPV~GH 214 (243)
++.|..+++ ||.... ..+.++.|.+. ++||+-.
T Consensus 148 -~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK 192 (352)
T PRK05437 148 -EADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVK 192 (352)
T ss_pred -CCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEE
Confidence 344444555 222221 12557888887 9999943
No 352
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=74.20 E-value=55 Score=27.98 Aligned_cols=95 Identities=17% Similarity=0.143 Sum_probs=53.2
Q ss_pred ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHH
Q 026125 98 TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAV 177 (243)
Q Consensus 98 TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~ 177 (243)
+-.+...|..+.++|+|++-.=. --.+...++.++...-.+.+.+......++.| .++++. .
T Consensus 5 Gi~~~ed~~~a~~~Gvd~ig~i~-------~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn-------~~~~~i----~ 66 (203)
T cd00405 5 GITTLEDALAAAEAGADAIGFIF-------APKSPRYVSPEQAREIVAALPPFVKRVGVFVN-------EDLEEI----L 66 (203)
T ss_pred CCCCHHHHHHHHHcCCCEEEEec-------CCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeC-------CCHHHH----H
Confidence 44567788999999999984321 11355666776644433333221111222222 134544 4
Q ss_pred HHHHHhCCCEEEeCCCCCchHHHHHHHHHc-CCcee
Q 026125 178 RILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVM 212 (243)
Q Consensus 178 Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~ 212 (243)
++.++.|+|+|+|.|... ...++.+.+. |++++
T Consensus 67 ~ia~~~~~d~Vqlhg~e~--~~~~~~l~~~~~~~~i 100 (203)
T cd00405 67 EIAEELGLDVVQLHGDES--PEYCAQLRARLGLPVI 100 (203)
T ss_pred HHHHhcCCCEEEECCCCC--HHHHHHHHhhcCCcEE
Confidence 556678999999987742 2335666552 55554
No 353
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=74.12 E-value=54 Score=28.56 Aligned_cols=70 Identities=14% Similarity=0.256 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
...|+.++++|+|.|++-|.-. -|.. ....++ ..+.+++..+.|+++. |+. .|++++ .++ +
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~---~g~~--~g~~~~----~i~~i~~~~~iPvia~----GGI-~~~~di----~~~-~ 212 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDV---EGLL--EGVNTE----PVKELVDSVDIPVIAS----GGV-TTLDDL----RAL-K 212 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecC---CCCc--CCCCHH----HHHHHHHhCCCCEEEe----CCC-CCHHHH----HHH-H
Confidence 3557888899999887654211 1211 122333 2366777777775443 244 367776 344 4
Q ss_pred HhCCCEEEe
Q 026125 182 EGGMDAIKL 190 (243)
Q Consensus 182 eaGAdaVKL 190 (243)
+.||++|-+
T Consensus 213 ~~Ga~gv~v 221 (241)
T PRK13585 213 EAGAAGVVV 221 (241)
T ss_pred HcCCCEEEE
Confidence 689999987
No 354
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=74.09 E-value=43 Score=33.75 Aligned_cols=85 Identities=13% Similarity=0.183 Sum_probs=48.9
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
|.-..++|.|+|=+|-.. |.+ ..++|....+++++..+.| |..|. | +++.+ .+.++ +|
T Consensus 171 A~~~~~~GADIIDIG~~s---------t~p-~~~~v~~~V~~l~~~~~~p-ISIDT----~--~~~v~----eaAL~-aG 228 (499)
T TIGR00284 171 AARMERDGADMVALGTGS---------FDD-DPDVVKEKVKTALDALDSP-VIADT----P--TLDEL----YEALK-AG 228 (499)
T ss_pred HHHHHHCCCCEEEECCCc---------CCC-cHHHHHHHHHHHHhhCCCc-EEEeC----C--CHHHH----HHHHH-cC
Confidence 334447899999888322 222 3446777778887655544 67884 4 33433 23443 58
Q ss_pred CCEEEe-CCCCCchHHHHHHHHHcCCceee
Q 026125 185 MDAIKL-EGGSPSRITAARGIVEAGIAVMG 213 (243)
Q Consensus 185 AdaVKL-EGg~~~~~~~i~~L~~~GIPV~G 213 (243)
|+.|+= +++ ..+.+...+.+.|.||+.
T Consensus 229 AdiINsVs~~--~~d~~~~l~a~~g~~vVl 256 (499)
T TIGR00284 229 ASGVIMPDVE--NAVELASEKKLPEDAFVV 256 (499)
T ss_pred CCEEEECCcc--chhHHHHHHHHcCCeEEE
Confidence 888873 332 223434445556777654
No 355
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=74.01 E-value=51 Score=30.73 Aligned_cols=100 Identities=22% Similarity=0.205 Sum_probs=57.1
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHH----HHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHC----RAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~----~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
|.-.-+.|.|+|=+|.-- ..|+..+|+-+|-+... +++++..+ ..|..| +|. ++.+ .+.+
T Consensus 44 a~~~~~~GAdIIDIGgeS-----TrPg~~~v~~eeE~~Rv~pvI~~l~~~~~-~~ISID----T~~--~~va----~~AL 107 (282)
T PRK11613 44 ANLMINAGATIIDVGGES-----TRPGAAEVSVEEELDRVIPVVEAIAQRFE-VWISVD----TSK--PEVI----RESA 107 (282)
T ss_pred HHHHHHCCCcEEEECCCC-----CCCCCCCCCHHHHHHHHHHHHHHHHhcCC-CeEEEE----CCC--HHHH----HHHH
Confidence 334557799999888322 23455678888765543 44443333 346688 563 3333 3345
Q ss_pred HHhCCCEEEeCCCCCchHHHHHHHHHcCCceee-ccCCccccc
Q 026125 181 KEGGMDAIKLEGGSPSRITAARGIVEAGIAVMG-HVGLTPQAI 222 (243)
Q Consensus 181 keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~G-HiGLtPQ~~ 222 (243)
+ +||+.|+==.|-. .+..++.+.+.|.||+- |..=+|++.
T Consensus 108 ~-~GadiINDI~g~~-d~~~~~~~a~~~~~vVlmh~~g~p~~~ 148 (282)
T PRK11613 108 K-AGAHIINDIRSLS-EPGALEAAAETGLPVCLMHMQGNPKTM 148 (282)
T ss_pred H-cCCCEEEECCCCC-CHHHHHHHHHcCCCEEEEcCCCCCCcc
Confidence 3 6999985433321 13335556788888764 653357653
No 356
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=73.94 E-value=22 Score=32.71 Aligned_cols=94 Identities=14% Similarity=0.082 Sum_probs=62.1
Q ss_pred HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 026125 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (243)
Q Consensus 107 iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGA 185 (243)
...+.|+|-|+++.|.|= ...+|.||=..-.+.+++.+ .+..|++.... .|.+++++.+... ++.||
T Consensus 29 ~~~~~Gv~gi~v~GstGE-------~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~----~~t~~ai~~a~~A-~~~Ga 96 (294)
T TIGR02313 29 FQIEGGSHAISVGGTSGE-------PGSLTLEERKQAIENAIDQIAGRIPFAPGTGA----LNHDETLELTKFA-EEAGA 96 (294)
T ss_pred HHHHcCCCEEEECccCcc-------cccCCHHHHHHHHHHHHHHhCCCCcEEEECCc----chHHHHHHHHHHH-HHcCC
Confidence 344679999988766643 34678999777777665543 33446666533 4778999888665 57999
Q ss_pred CEEEeCCCC------CchHHHHHHHHHc--CCcee
Q 026125 186 DAIKLEGGS------PSRITAARGIVEA--GIAVM 212 (243)
Q Consensus 186 daVKLEGg~------~~~~~~i~~L~~~--GIPV~ 212 (243)
|+|-+---. +....-.+.+.++ ++||+
T Consensus 97 d~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~ 131 (294)
T TIGR02313 97 DAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPII 131 (294)
T ss_pred CEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEE
Confidence 999875441 1223334567766 58887
No 357
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=73.91 E-value=50 Score=30.51 Aligned_cols=93 Identities=17% Similarity=0.028 Sum_probs=60.9
Q ss_pred HHHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC-CcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR-PLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 104 sA~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~-~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
.+.+.++.|+..+= +|. -++++-+.++++|++..+. .-+..|.- ++| |.++|++.+.++-
T Consensus 116 ~~~~~~~~Gf~~~KiKvG~--------------~~~~~d~~~v~~vr~~~g~~~~l~vDaN-~~w--~~~~A~~~~~~l~ 178 (307)
T TIGR01927 116 LLRSAKAEGFRTFKWKVGV--------------GELAREGMLVNLLLEALPDKAELRLDAN-GGL--SPDEAQQFLKALD 178 (307)
T ss_pred HHHHHHhCCCCEEEEEeCC--------------CChHHHHHHHHHHHHHcCCCCeEEEeCC-CCC--CHHHHHHHHHhcc
Confidence 33555577999883 551 1456678999999998765 56779984 678 7899987776553
Q ss_pred HHhCCCEEEeCCCCCchHHHHHHHHHc-CCceeec
Q 026125 181 KEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 181 keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~GH 214 (243)
.+.|.+.-.+|.--..... .+.|.+. +|||+.-
T Consensus 179 ~~~~~~i~~iEqP~~~~~~-~~~l~~~~~~Pia~d 212 (307)
T TIGR01927 179 PNLRGRIAFLEEPLPDADE-MSAFSEATGTAIALD 212 (307)
T ss_pred cccCCCceEEeCCCCCHHH-HHHHHHhCCCCEEeC
Confidence 1123566689976433233 4456444 7999875
No 358
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=73.91 E-value=30 Score=32.14 Aligned_cols=73 Identities=23% Similarity=0.363 Sum_probs=45.1
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCC--ccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTT--LPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT--~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
.++.++++|+|.|=|.. | |+... .++.-...+...+.|++.++.|+ +++ |++ .+++++ .++++
T Consensus 246 ia~~Le~~gvd~iev~~--g----~~~~~~~~~~~~~~~~~~~~~ir~~~~iPV-i~~---G~i-~t~~~a----~~~l~ 310 (336)
T cd02932 246 LAKALKELGVDLIDVSS--G----GNSPAQKIPVGPGYQVPFAERIRQEAGIPV-IAV---GLI-TDPEQA----EAILE 310 (336)
T ss_pred HHHHHHHcCCCEEEECC--C----CCCcccccCCCccccHHHHHHHHhhCCCCE-EEe---CCC-CCHHHH----HHHHH
Confidence 45677889999995431 1 11111 12222334667788988888774 443 345 477777 56787
Q ss_pred HhCCCEEEeC
Q 026125 182 EGGMDAIKLE 191 (243)
Q Consensus 182 eaGAdaVKLE 191 (243)
++.||+|-+-
T Consensus 311 ~g~aD~V~~g 320 (336)
T cd02932 311 SGRADLVALG 320 (336)
T ss_pred cCCCCeehhh
Confidence 6669998774
No 359
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=73.86 E-value=34 Score=29.18 Aligned_cols=86 Identities=28% Similarity=0.285 Sum_probs=55.3
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
..|+++..+|||+|..| ...|-||.+. .||-..+ ....++-+ .+.| .+-+.-.++.++|
T Consensus 31 via~~l~d~GfeVi~~g-------------~~~tp~e~v~--aA~~~dv-~vIgvSsl-~g~h----~~l~~~lve~lre 89 (143)
T COG2185 31 VIARALADAGFEVINLG-------------LFQTPEEAVR--AAVEEDV-DVIGVSSL-DGGH----LTLVPGLVEALRE 89 (143)
T ss_pred HHHHHHHhCCceEEecC-------------CcCCHHHHHH--HHHhcCC-CEEEEEec-cchH----HHHHHHHHHHHHH
Confidence 56888999999999887 2345577665 3343333 44344433 4455 4555566788888
Q ss_pred hCCCEEE-eCCCCCchHHHHHHHHHcCCc
Q 026125 183 GGMDAIK-LEGGSPSRITAARGIVEAGIA 210 (243)
Q Consensus 183 aGAdaVK-LEGg~~~~~~~i~~L~~~GIP 210 (243)
.|++-|. +-||.--..+ +..|-+.|+-
T Consensus 90 ~G~~~i~v~~GGvip~~d-~~~l~~~G~~ 117 (143)
T COG2185 90 AGVEDILVVVGGVIPPGD-YQELKEMGVD 117 (143)
T ss_pred hCCcceEEeecCccCchh-HHHHHHhCcc
Confidence 9999988 6666432333 5678888764
No 360
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=73.76 E-value=23 Score=32.81 Aligned_cols=135 Identities=19% Similarity=0.187 Sum_probs=79.8
Q ss_pred CCCHHHHHHhhhCCC-cEEEEecCCHHHHHH------HHHcCCCEE--EeCcchhhhhccCCCCccCCHHHHHHHHHHHH
Q 026125 78 RVTLTHLRQKHKNGE-PITMVTAYDYPSAVH------LDSAGIDIC--LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVA 148 (243)
Q Consensus 78 ~~tv~~Lr~~kk~g~-~ItmlTAYD~~sA~i------ae~AGiDiI--LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~ 148 (243)
..++..+++. ..+. ++.-+||=|..-..+ +.+.|+.=| |.||.. +-+++.+....-.||+...+.-.
T Consensus 65 ~~~~~~~~~~-~~~~~~i~Hltc~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp---~g~~~~~~~~~s~dLv~lik~~~ 140 (291)
T COG0685 65 SVAAAALLKR-TGGIEPIPHLTCRDRNRIEIISILKGAAALGIRNILALRGDPP---AGDKPGGKDLYSVDLVELIKKMR 140 (291)
T ss_pred HHHHHHHHHh-cCCCccceeecccCCCHHHHHHHHHHHHHhCCceEEEecCCCC---CCCCCCccccCHHHHHHHHHHhc
Confidence 3445555554 3354 999999999865544 346799833 699987 33455444677788888777655
Q ss_pred cccCCCcEE--eeCCCCCCc-CCHHHHHHHHHHHHHHhCCCEEEeCCCC--CchHHHHHHHHHcCCceeeccCCccc
Q 026125 149 RGAKRPLLV--GDLPFGTYE-SSTNQAVDTAVRILKEGGMDAIKLEGGS--PSRITAARGIVEAGIAVMGHVGLTPQ 220 (243)
Q Consensus 149 Rga~~~fvV--aDmPfgsY~-~s~e~Av~nA~Rl~keaGAdaVKLEGg~--~~~~~~i~~L~~~GIPV~GHiGLtPQ 220 (243)
.+. |-| +==|++.-+ .+.+..+.+-.|=+ ++|||-+--.=-. +......+++.++||-+==|.|++|=
T Consensus 141 ~~~---f~i~~A~~Pe~h~~s~~~~~d~~~lkrKv-~aGAd~~iTQ~~fd~e~~~~~~~~~~~~g~~~pI~~Gimpi 213 (291)
T COG0685 141 GGI---FDIGVAAYPEGHPESKDVKEDIKRLKRKV-DAGADFFITQFFFDVEAFERFAERVRAAGIDIPIIPGIMPV 213 (291)
T ss_pred CCe---EEEEEEeCCCCCccchhhHHHHHHHHHHH-hcchHHHHHHHccCHHHHHHHHHHHHhcCCCCCeeeccccc
Confidence 443 223 444553321 22233444444444 4788876433221 12344566778888766668899883
No 361
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=73.73 E-value=53 Score=30.47 Aligned_cols=75 Identities=20% Similarity=0.208 Sum_probs=53.3
Q ss_pred CcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHH
Q 026125 92 EPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQ 171 (243)
Q Consensus 92 ~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~ 171 (243)
++..++=+-+...|..+-++|+|+|+. | ..+.+++...++.+..+.++..+.+- |+ .++++
T Consensus 182 ~~~I~VEv~tleea~~A~~~GaDiI~L-D-------------n~~~e~l~~~v~~~~~~~~~~~ieAs---Gg--It~~n 242 (273)
T PRK05848 182 TAKIEIECESLEEAKNAMNAGADIVMC-D-------------NMSVEEIKEVVAYRNANYPHVLLEAS---GN--ITLEN 242 (273)
T ss_pred CceEEEEeCCHHHHHHHHHcCCCEEEE-C-------------CCCHHHHHHHHHHhhccCCCeEEEEE---CC--CCHHH
Confidence 466888999999999999999999984 2 23778877777655545555544443 22 35666
Q ss_pred HHHHHHHHHHHhCCCEEEe
Q 026125 172 AVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 172 Av~nA~Rl~keaGAdaVKL 190 (243)
+ .++. +.|+|.|-+
T Consensus 243 i----~~ya-~~GvD~Isv 256 (273)
T PRK05848 243 I----NAYA-KSGVDAISS 256 (273)
T ss_pred H----HHHH-HcCCCEEEe
Confidence 5 5555 689999876
No 362
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=73.71 E-value=6.4 Score=35.43 Aligned_cols=40 Identities=25% Similarity=0.342 Sum_probs=29.9
Q ss_pred CHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHc
Q 026125 101 DYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR 149 (243)
Q Consensus 101 D~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R 149 (243)
|-..+++++++|.|.|+||.|.+. . -++|+.+.-.+.+++
T Consensus 14 ~~~~~~~~~~~gtdai~vGGS~~v--------~-~~~~~~~~~ik~~~~ 53 (219)
T cd02812 14 DEEIAKLAEESGTDAIMVGGSDGV--------S-STLDNVVRLIKRIRR 53 (219)
T ss_pred HHHHHHHHHhcCCCEEEECCccch--------h-hhHHHHHHHHHHhcC
Confidence 344678888899999999977633 1 378888877777765
No 363
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=73.65 E-value=31 Score=30.67 Aligned_cols=109 Identities=23% Similarity=0.294 Sum_probs=59.8
Q ss_pred EEEecCCHHHHHHHHHcCCCEE-EeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHH--
Q 026125 95 TMVTAYDYPSAVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTN-- 170 (243)
Q Consensus 95 tmlTAYD~~sA~iae~AGiDiI-LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e-- 170 (243)
.-++++++.+|..|+++|.|=| |+.+ +. . ..+--+++. +. .+++..+.|..+-==|- |+|.-|.+
T Consensus 3 lEvcv~s~~~a~~A~~~GAdRiELc~~-l~--~----GGlTPS~g~-i~---~~~~~~~ipv~vMIRpr~gdF~Ys~~E~ 71 (201)
T PF03932_consen 3 LEVCVESLEDALAAEAGGADRIELCSN-LE--V----GGLTPSLGL-IR---QAREAVDIPVHVMIRPRGGDFVYSDEEI 71 (201)
T ss_dssp EEEEESSHHHHHHHHHTT-SEEEEEBT-GG--G----T-B---HHH-HH---HHHHHTTSEEEEE--SSSS-S---HHHH
T ss_pred EEEEeCCHHHHHHHHHcCCCEEEECCC-cc--C----CCcCcCHHH-HH---HHHhhcCCceEEEECCCCCCccCCHHHH
Confidence 4578999999999999999977 7873 21 1 112233443 33 33335555544411132 22322444
Q ss_pred HHHHHHHHHHHHhCCCEEEe----CCCCCchHHHHHHHHH--cCCceeecc
Q 026125 171 QAVDTAVRILKEGGMDAIKL----EGGSPSRITAARGIVE--AGIAVMGHV 215 (243)
Q Consensus 171 ~Av~nA~Rl~keaGAdaVKL----EGg~~~~~~~i~~L~~--~GIPV~GHi 215 (243)
+.+..-++.+++.|||++-+ ++|. .-....+.|++ .|.||.=|=
T Consensus 72 ~~M~~dI~~~~~~GadG~VfG~L~~dg~-iD~~~~~~Li~~a~~~~~tFHR 121 (201)
T PF03932_consen 72 EIMKEDIRMLRELGADGFVFGALTEDGE-IDEEALEELIEAAGGMPVTFHR 121 (201)
T ss_dssp HHHHHHHHHHHHTT-SEEEE--BETTSS-B-HHHHHHHHHHHTTSEEEE-G
T ss_pred HHHHHHHHHHHHcCCCeeEEEeECCCCC-cCHHHHHHHHHhcCCCeEEEeC
Confidence 57888889999999999876 4553 22233455554 377777773
No 364
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=73.59 E-value=44 Score=26.61 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=55.0
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
|+.+.++|+|.|.++.+.... .++....++++++..+.-.++..+.- +. ..+++ . +.+.|
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~-----------~~~~~~~~~~i~~~~~~~~v~~~~~~--~~-~~~~~-----~-~~~~g 136 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYL-----------AREDLELIRELREAVPDVKVVVKLSP--TG-ELAAA-----A-AEEAG 136 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcH-----------HHHHHHHHHHHHHhcCCceEEEEECC--CC-ccchh-----h-HHHcC
Confidence 568999999999888766432 34445566777776633335555543 11 11222 1 34689
Q ss_pred CCEEEeCCCCCch---------HHHHHH-HHHcCCceeeccCCcc
Q 026125 185 MDAIKLEGGSPSR---------ITAARG-IVEAGIAVMGHVGLTP 219 (243)
Q Consensus 185 AdaVKLEGg~~~~---------~~~i~~-L~~~GIPV~GHiGLtP 219 (243)
+|.|.+.++.... ...++. .-..++||++==|+++
T Consensus 137 ~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~ 181 (200)
T cd04722 137 VDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGIND 181 (200)
T ss_pred CCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCC
Confidence 9999997753211 011221 2345788887656655
No 365
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=73.52 E-value=52 Score=30.69 Aligned_cols=81 Identities=19% Similarity=0.311 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCCEEEeCcch--hhhhccCCCCccCCHH--HHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSA--AMVVHGHDTTLPITLE--EMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVR 178 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSl--gmv~lG~~dT~~vTld--eMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~R 178 (243)
..++.++++|+|+|-|.... .....+.++. +.... -.+..++.|++.++.| |+++ |++ .+++++ .+
T Consensus 240 ~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ik~~v~iP-Vi~~---G~i-~t~~~a----~~ 309 (338)
T cd04733 240 EVVEALEEAGVDLVELSGGTYESPAMAGAKKE-STIAREAYFLEFAEKIRKVTKTP-LMVT---GGF-RTRAAM----EQ 309 (338)
T ss_pred HHHHHHHHcCCCEEEecCCCCCCccccccccC-CccccchhhHHHHHHHHHHcCCC-EEEe---CCC-CCHHHH----HH
Confidence 34677899999999653211 0010000110 00000 1245567788888777 4554 244 467777 67
Q ss_pred HHHHhCCCEEEeCCC
Q 026125 179 ILKEGGMDAIKLEGG 193 (243)
Q Consensus 179 l~keaGAdaVKLEGg 193 (243)
++++++||.|-+--+
T Consensus 310 ~l~~g~aD~V~lgR~ 324 (338)
T cd04733 310 ALASGAVDGIGLARP 324 (338)
T ss_pred HHHcCCCCeeeeChH
Confidence 887778999988543
No 366
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=73.50 E-value=73 Score=29.09 Aligned_cols=102 Identities=14% Similarity=0.028 Sum_probs=66.4
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHH---cC-CCEE--EeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDS---AG-IDIC--LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR 153 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~---AG-iDiI--LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~ 153 (243)
.+.-++++.++|-++.+-.+|+...|.++.+ +| .+.| .+| =.+|.+.-.++.+....+.+.+..+.
T Consensus 101 ~l~ai~~L~~~GI~vn~T~vfs~~Qa~~aa~A~~aG~a~yispfvg--------R~dd~g~D~~~~i~~i~~i~~~~~~t 172 (236)
T TIGR02134 101 TGPLIQKLSADGITLNVTALTTIEQVEKVCQSFTDGVPGIVSVFAG--------RIADTGVDPEPHMREALEIVAQKPGV 172 (236)
T ss_pred HHHHHHHHHHCCCcEEeehcCCHHHHHHHHHHHhCCCCeEEEEecc--------hhhhcCCCcHHHHHHHHHHHHhCCCc
Confidence 3777888989999999999999999998765 79 5877 465 12233333444444444444443333
Q ss_pred CcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH
Q 026125 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE 206 (243)
Q Consensus 154 ~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~ 206 (243)
-++.+ |+ .++.+. .+.. .+|||.+-+- +++.+.|.+
T Consensus 173 kILaA-----S~-R~~~~v----~~a~-~~Gad~vTvp------~~v~~~l~~ 208 (236)
T TIGR02134 173 ELLWA-----SP-RELFNI----IQAD-RIGCDIITCA------HDILAKLPL 208 (236)
T ss_pred EEEEE-----cc-CCHHHH----HHHH-HcCCCEEECC------HHHHHHHHh
Confidence 33333 77 478777 4455 4899999874 455666654
No 367
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=73.46 E-value=60 Score=28.54 Aligned_cols=112 Identities=18% Similarity=0.217 Sum_probs=67.4
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
+..|++.+...-.|=.=|..|.-.+..+-++|.|.+.++-.- .+++.. ++..+.+++.+
T Consensus 52 i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~~---------------~~v~~~----~~~~~~~~~~G-- 110 (206)
T PRK09140 52 IAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNTD---------------PEVIRR----AVALGMVVMPG-- 110 (206)
T ss_pred HHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCCC---------------HHHHHH----HHHCCCcEEcc--
Confidence 444444332222344457899999999999999999887221 233432 33344443333
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc---CCceeeccCCcccccc
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA---GIAVMGHVGLTPQAIS 223 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~---GIPV~GHiGLtPQ~~~ 223 (243)
.+ |++|+ .+.. +.|+|.||+=-....-...++.+.+. .||+|.==|.+|....
T Consensus 111 ---~~--t~~E~----~~A~-~~Gad~vk~Fpa~~~G~~~l~~l~~~~~~~ipvvaiGGI~~~n~~ 166 (206)
T PRK09140 111 ---VA--TPTEA----FAAL-RAGAQALKLFPASQLGPAGIKALRAVLPPDVPVFAVGGVTPENLA 166 (206)
T ss_pred ---cC--CHHHH----HHHH-HcCCCEEEECCCCCCCHHHHHHHHhhcCCCCeEEEECCCCHHHHH
Confidence 23 77887 3344 58999999811111224446767653 4999988889886655
No 368
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=73.39 E-value=7.1 Score=36.04 Aligned_cols=91 Identities=19% Similarity=0.132 Sum_probs=61.2
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHh
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~kea 183 (243)
.++.+.++|+|.|.+-|++|. .+-.++-+.++++++..+.. .+.| -.+.+.--|+.|+...+ ++
T Consensus 160 ~~~~~~~~G~d~i~l~DT~G~----------~~P~~v~~lv~~l~~~~~~~----~i~~-H~Hn~~Gla~AN~laA~-~a 223 (287)
T PRK05692 160 VAERLFALGCYEISLGDTIGV----------GTPGQVRAVLEAVLAEFPAE----RLAG-HFHDTYGQALANIYASL-EE 223 (287)
T ss_pred HHHHHHHcCCcEEEeccccCc----------cCHHHHHHHHHHHHHhCCCC----eEEE-EecCCCCcHHHHHHHHH-Hh
Confidence 466777899999999998866 35566777777888766521 1223 23457778999999999 58
Q ss_pred CCCEEEeC-------------CCCCchHHHHHHHHHcCCc
Q 026125 184 GMDAIKLE-------------GGSPSRITAARGIVEAGIA 210 (243)
Q Consensus 184 GAdaVKLE-------------Gg~~~~~~~i~~L~~~GIP 210 (243)
||+.|-.- -|..-.+.++..|...|+.
T Consensus 224 G~~~id~s~~GlGecpfa~g~aGN~~~E~lv~~L~~~g~~ 263 (287)
T PRK05692 224 GITVFDASVGGLGGCPYAPGASGNVATEDVLYMLHGLGIE 263 (287)
T ss_pred CCCEEEEEccccCCCCCCCCccccccHHHHHHHHHhcCCC
Confidence 99987532 1222345566667666654
No 369
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=73.27 E-value=24 Score=32.90 Aligned_cols=98 Identities=23% Similarity=0.333 Sum_probs=68.8
Q ss_pred HHHcCCC-EEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 108 LDSAGID-ICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 108 ae~AGiD-iILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
++.-|.. +++.| |.++.+.|.++..-.+.+++..-+... +.+-..| .. |+. .+-+++.++|
T Consensus 51 l~kkGy~g~llSG--------Gm~srg~VPl~kf~d~lK~lke~~~l~-inaHvGf----vd-E~~----~eklk~~~vd 112 (275)
T COG1856 51 LEKKGYEGCLLSG--------GMDSRGKVPLWKFKDELKALKERTGLL-INAHVGF----VD-ESD----LEKLKEELVD 112 (275)
T ss_pred HHhcCceeEEEeC--------CcCCCCCccHHHHHHHHHHHHHhhCeE-EEEEeee----cc-HHH----HHHHHHhcCc
Confidence 4455777 44678 778899999999999999999877644 5677766 23 444 3556788999
Q ss_pred EEEeC--CCC-------------CchHHHHHHHHHcCCceeecc--CCcccccc
Q 026125 187 AIKLE--GGS-------------PSRITAARGIVEAGIAVMGHV--GLTPQAIS 223 (243)
Q Consensus 187 aVKLE--Gg~-------------~~~~~~i~~L~~~GIPV~GHi--GLtPQ~~~ 223 (243)
.|-|. |.. +.....++-|.++||.|.-|| ||+--..+
T Consensus 113 vvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~ 166 (275)
T COG1856 113 VVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIH 166 (275)
T ss_pred EEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCccc
Confidence 99774 111 112234677899999999996 77655443
No 370
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=73.27 E-value=44 Score=28.09 Aligned_cols=91 Identities=19% Similarity=0.187 Sum_probs=51.9
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCC-CCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHD-TTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~-dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
..++.++++|+|.|=++ ++-|.- ....++++ .++.+++-.+.+ +.+|+ +.| ++++- .+.+.
T Consensus 15 ~~~~~~~~~g~d~i~~~-----~~Dg~~~~~~~~~~~----~v~~i~~~~~~~-v~v~l--m~~--~~~~~----~~~~~ 76 (210)
T TIGR01163 15 EEVKAVEEAGADWIHVD-----VMDGHFVPNLTFGPP----VLEALRKYTDLP-IDVHL--MVE--NPDRY----IEDFA 76 (210)
T ss_pred HHHHHHHHcCCCEEEEc-----CCCCCCCCCcccCHH----HHHHHHhcCCCc-EEEEe--eeC--CHHHH----HHHHH
Confidence 35677889999999554 111111 12224444 445676544444 44654 235 34444 35555
Q ss_pred HhCCCEEEeCCCC-CchHHHHHHHHHcCCce
Q 026125 182 EGGMDAIKLEGGS-PSRITAARGIVEAGIAV 211 (243)
Q Consensus 182 eaGAdaVKLEGg~-~~~~~~i~~L~~~GIPV 211 (243)
+.|+|+|.+-++. +.....++.+...|+.+
T Consensus 77 ~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~ 107 (210)
T TIGR01163 77 EAGADIITVHPEASEHIHRLLQLIKDLGAKA 107 (210)
T ss_pred HcCCCEEEEccCCchhHHHHHHHHHHcCCcE
Confidence 7999998777663 22344566677778765
No 371
>PLN02858 fructose-bisphosphate aldolase
Probab=73.17 E-value=1.1e+02 Score=34.45 Aligned_cols=148 Identities=18% Similarity=0.258 Sum_probs=91.9
Q ss_pred CCCCHHHHH-HhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc
Q 026125 77 QRVTLTHLR-QKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA 151 (243)
Q Consensus 77 ~~~tv~~Lr-~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga 151 (243)
.+++..++- +.++++--+-..++||+.+++ .||+.+.++|+--.....-..| ++ +...++..++-+
T Consensus 1098 ~~v~~~~~l~~A~~~~yav~afn~~n~e~~~avi~aAe~~~sPvIl~~~~~~~~~~~--------~~-~~~~~~~~a~~~ 1168 (1378)
T PLN02858 1098 ARSSTKELLLNAEKGGYAVGAFNVYNLEGIEAVVAAAEAEKSPAILQVHPGALKQGG--------IP-LVSCCIAAAEQA 1168 (1378)
T ss_pred CCccHHHHHHHHHHCCcEEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcC--------HH-HHHHHHHHHHHC
Confidence 357777754 456677789999999999986 4788899999733222222222 33 455556666666
Q ss_pred CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCccccccc
Q 026125 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQAISV 224 (243)
Q Consensus 152 ~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ~~~~ 224 (243)
+-| |+.-+..|. +.|.. .+.+ +.|.+.|.+.|+..- +..+++.--..||+|=|=||-+.-.-.-
T Consensus 1169 ~vp-V~lHLDHg~---~~~~i----~~ai-~~Gf~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~ 1239 (1378)
T PLN02858 1169 SVP-ITVHFDHGT---SKHEL----LEAL-ELGFDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDG 1239 (1378)
T ss_pred CCC-EEEECCCCC---CHHHH----HHHH-HhCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCC
Confidence 666 678887742 34443 4455 479999999888432 2244555556799997777766532211
Q ss_pred --ccCccccccCHHhhcccc
Q 026125 225 --LGGFRPQGKNVTSAVKVF 242 (243)
Q Consensus 225 --~GGykvqGkt~~~A~~ll 242 (243)
.+.....-.+.++|++.+
T Consensus 1240 ~~~~~~~~~~T~p~~a~~Fv 1259 (1378)
T PLN02858 1240 LTVEEYEAKLTDVDQAKEFI 1259 (1378)
T ss_pred ccccccccCCCCHHHHHHHH
Confidence 011223345677877653
No 372
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=73.04 E-value=7.8 Score=35.68 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
.-.|..+.++|-|.|+||.|. .+|.+.|..-.++|+.-.+.|.+.
T Consensus 31 ~ei~~~~~~~GTDaImIGGS~-----------gvt~~~~~~~v~~ik~~~~lPvil 75 (240)
T COG1646 31 DEIAEAAAEAGTDAIMIGGSD-----------GVTEENVDNVVEAIKERTDLPVIL 75 (240)
T ss_pred HHHHHHHHHcCCCEEEECCcc-----------cccHHHHHHHHHHHHhhcCCCEEE
Confidence 345778889999999999776 568888999999998777777544
No 373
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=72.99 E-value=51 Score=27.74 Aligned_cols=96 Identities=19% Similarity=0.187 Sum_probs=55.1
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCcc-CCHHHHHHHHHHHHcccCCCcEEee
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLP-ITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~-vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
...+++.+ +...+.-+++.+...+..+.+.|+|.|.+|-..... ..++..+ ..++. .+.+++..+...|+++
T Consensus 94 ~~~~~~~~-~~~~~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~~~--~~~~~~~~~g~~~----~~~~~~~~~~~~v~a~ 166 (212)
T PRK00043 94 VADARALL-GPDAIIGLSTHTLEEAAAALAAGADYVGVGPIFPTP--TKKDAKAPQGLEG----LREIRAAVGDIPIVAI 166 (212)
T ss_pred HHHHHHHc-CCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCC--CCCCCCCCCCHHH----HHHHHHhcCCCCEEEE
Confidence 44555553 334566778889999999999999999877211110 0111111 22333 3445555552336666
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
|+- |+++ +.+++ +.||++|-+-+.
T Consensus 167 ---GGI--~~~~----i~~~~-~~Ga~gv~~gs~ 190 (212)
T PRK00043 167 ---GGI--TPEN----APEVL-EAGADGVAVVSA 190 (212)
T ss_pred ---CCc--CHHH----HHHHH-HcCCCEEEEeHH
Confidence 343 4543 45566 589999987443
No 374
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=72.99 E-value=31 Score=29.56 Aligned_cols=73 Identities=19% Similarity=0.265 Sum_probs=44.3
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHh
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~kea 183 (243)
.++.++++|+|.|.+-+...- .++ ..+..++ .++.|++..+.| |+++= +. .+++++ .+++..+
T Consensus 143 ~~~~l~~~Gvd~i~v~~~~~~--~~~--~~~~~~~----~~~~i~~~~~ip-vi~~G---gi-~~~~d~----~~~l~~~ 205 (231)
T cd02801 143 LAKALEDAGASALTVHGRTRE--QRY--SGPADWD----YIAEIKEAVSIP-VIANG---DI-FSLEDA----LRCLEQT 205 (231)
T ss_pred HHHHHHHhCCCEEEECCCCHH--HcC--CCCCCHH----HHHHHHhCCCCe-EEEeC---CC-CCHHHH----HHHHHhc
Confidence 467788999999865322110 112 1233444 346677777666 56653 44 366776 5677666
Q ss_pred CCCEEEeCCC
Q 026125 184 GMDAIKLEGG 193 (243)
Q Consensus 184 GAdaVKLEGg 193 (243)
|||+|.+--+
T Consensus 206 gad~V~igr~ 215 (231)
T cd02801 206 GVDGVMIGRG 215 (231)
T ss_pred CCCEEEEcHH
Confidence 9999998644
No 375
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=72.92 E-value=38 Score=30.87 Aligned_cols=126 Identities=21% Similarity=0.168 Sum_probs=67.8
Q ss_pred CCCcEEEEecCCHHHHHH------HHHcCCCEE--EeCcchhhhhc-cCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 90 NGEPITMVTAYDYPSAVH------LDSAGIDIC--LVGDSAAMVVH-GHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 90 ~g~~ItmlTAYD~~sA~i------ae~AGiDiI--LVGDSlgmv~l-G~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
+-++|.-+||.|.....+ +.++||+=| |.||.....-. ..+........|++...+. ..+-....-++.-
T Consensus 70 g~~~i~Hlt~rd~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~~-~~~~~~~i~va~~ 148 (287)
T PF02219_consen 70 GIEPIPHLTCRDRNREALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFDYALDLIRLIRQ-EYGDDFSIGVAGY 148 (287)
T ss_dssp T--EEEEEESTTSBHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-SSHHHHHHHHHH-HHGGGSEEEEEE-
T ss_pred CCceEEeecccCCCHHHHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhHHHHHHHHHHHH-hcCcccccccccC
Confidence 558999999999765332 457899944 68997644221 1121123346677766554 1122123334667
Q ss_pred CCCCCc-CCHHHHHHHHHHHHHHhCCCEEEeCCCCC--chHHHHHHHHHcCC--ceeeccCCcc
Q 026125 161 PFGTYE-SSTNQAVDTAVRILKEGGMDAIKLEGGSP--SRITAARGIVEAGI--AVMGHVGLTP 219 (243)
Q Consensus 161 PfgsY~-~s~e~Av~nA~Rl~keaGAdaVKLEGg~~--~~~~~i~~L~~~GI--PV~GHiGLtP 219 (243)
|.+..+ .+.+.-++...+-+ ++||+.+...=... .....++.+.+.|| || +.|+.|
T Consensus 149 P~~hp~~~~~~~~~~~l~~Ki-~aGA~f~iTQ~~fd~~~~~~~~~~~~~~g~~~pI--i~GI~p 209 (287)
T PF02219_consen 149 PEGHPEAPDFEAELKRLKKKI-DAGADFIITQPFFDAEAFERFLDRLREAGIDVPI--IPGIMP 209 (287)
T ss_dssp TTHHTTCSSHHHHHHHHHHHH-HTTESEEEEEE-SSHHHHHHHHHHHHHTTHTSEE--EEEEE-
T ss_pred CCCCccccCHHHHHHHHHHHH-HCCCCEEeccccCCHHHHHHHHHHHHHcCCCCcE--EEEEec
Confidence 765332 35566566555655 58999987665432 23345666777887 66 668777
No 376
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=72.86 E-value=41 Score=28.40 Aligned_cols=74 Identities=14% Similarity=0.126 Sum_probs=46.7
Q ss_pred cCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceee
Q 026125 134 PITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMG 213 (243)
Q Consensus 134 ~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~G 213 (243)
.--+.+++.......+-.+..+++.+..+ +++.- ....+.+.+.++|+|-+.+.... ...++.+.+.||||+-
T Consensus 11 ~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-----~~~~~-~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~~~~ipvV~ 83 (265)
T cd06299 11 NPYFASLATAIQDAASAAGYSTIIGNSDE-----NPETE-NRYLDNLLSQRVDGIIVVPHEQS-AEQLEDLLKRGIPVVF 83 (265)
T ss_pred CccHHHHHHHHHHHHHHcCCEEEEEeCCC-----CHHHH-HHHHHHHHhcCCCEEEEcCCCCC-hHHHHHHHhCCCCEEE
Confidence 34567788777776665555555555322 23222 22344444689999999876533 3447889999999975
Q ss_pred c
Q 026125 214 H 214 (243)
Q Consensus 214 H 214 (243)
-
T Consensus 84 ~ 84 (265)
T cd06299 84 V 84 (265)
T ss_pred E
Confidence 3
No 377
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=72.66 E-value=39 Score=29.22 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=49.7
Q ss_pred HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 107 iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
.+.+.|+|.|+|+|-- ..+.+++-.+.--+++|..+.-| |.+.+ +++++-|++
T Consensus 10 ~l~~~g~dgi~v~~~g--------------------~~~~~k~~~~~~~i~~~~~~nv~--N~~s~-----~~~~~~G~~ 62 (233)
T PF01136_consen 10 KLKELGVDGILVSNPG--------------------LLELLKELGPDLKIIADYSLNVF--NSESA-----RFLKELGAS 62 (233)
T ss_pred HHHhCCCCEEEEcCHH--------------------HHHHHHHhCCCCcEEEecCccCC--CHHHH-----HHHHHcCCC
Confidence 3678899999999643 12345554454458999988666 55555 788889999
Q ss_pred EEEeCCCCCchHHHHHHHHHc
Q 026125 187 AIKLEGGSPSRITAARGIVEA 207 (243)
Q Consensus 187 aVKLEGg~~~~~~~i~~L~~~ 207 (243)
.|-+.--- ...-|+.|.+.
T Consensus 63 ~i~ls~EL--~~~ei~~i~~~ 81 (233)
T PF01136_consen 63 RITLSPEL--SLEEIKEIAEN 81 (233)
T ss_pred EEEECccC--CHHHHHHHHHh
Confidence 99986443 33446777765
No 378
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=72.53 E-value=31 Score=29.43 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=45.4
Q ss_pred cCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceee
Q 026125 134 PITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMG 213 (243)
Q Consensus 134 ~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~G 213 (243)
.--+.+++.......+....-+++.+-.. +++.. ..+.+.+.+.++|+|-+-++......+.+.+.++||||+-
T Consensus 11 ~~~~~~~~~~i~~~a~~~g~~~~~~~~~~-----~~~~~-~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~ipvV~ 84 (269)
T cd06281 11 NPLLAQLFSGAEDRLRAAGYSLLIANSLN-----DPERE-LEILRSFEQRRMDGIIIAPGDERDPELVDALASLDLPIVL 84 (269)
T ss_pred cccHHHHHHHHHHHHHHcCCEEEEEeCCC-----ChHHH-HHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHhCCCCEEE
Confidence 34566777777776666655555555321 33322 2334445567899999876543334446677888999865
Q ss_pred c
Q 026125 214 H 214 (243)
Q Consensus 214 H 214 (243)
.
T Consensus 85 i 85 (269)
T cd06281 85 L 85 (269)
T ss_pred E
Confidence 5
No 379
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=72.51 E-value=52 Score=28.82 Aligned_cols=69 Identities=23% Similarity=0.277 Sum_probs=41.4
Q ss_pred HHHHHHHHcCCCEEEeCcchh-hhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAA-MVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlg-mv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
..++.++++|+|.|++.+--. ...-|+ . ....+.+++.++.|++. - |+. .+++++ .++++
T Consensus 153 ~~~~~l~~~G~d~i~v~~i~~~g~~~g~------~----~~~i~~i~~~~~~pvia-~---GGi-~~~~di----~~~l~ 213 (243)
T cd04731 153 EWAKEVEELGAGEILLTSMDRDGTKKGY------D----LELIRAVSSAVNIPVIA-S---GGA-GKPEHF----VEAFE 213 (243)
T ss_pred HHHHHHHHCCCCEEEEeccCCCCCCCCC------C----HHHHHHHHhhCCCCEEE-e---CCC-CCHHHH----HHHHH
Confidence 456788899999887754110 111222 2 23345566667777544 3 244 367776 55666
Q ss_pred HhCCCEEEe
Q 026125 182 EGGMDAIKL 190 (243)
Q Consensus 182 eaGAdaVKL 190 (243)
..|||+|-+
T Consensus 214 ~~g~dgv~v 222 (243)
T cd04731 214 EGGADAALA 222 (243)
T ss_pred hCCCCEEEE
Confidence 569999988
No 380
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=72.39 E-value=38 Score=30.70 Aligned_cols=92 Identities=16% Similarity=0.144 Sum_probs=59.2
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCc-chhhhhccCCCCccCCHHHHHHHHHHHHcccCC-CcE
Q 026125 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGD-SAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR-PLL 156 (243)
Q Consensus 79 ~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGD-Slgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~-~fv 156 (243)
.++.+|.+.-+.-..-+|+-+++...+..+.++|+|+|.++. ++ .|..+.++ .+..+.+..+. .++
T Consensus 147 ~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl--------~~~~~d~~----~~~~l~~~~p~~~~v 214 (260)
T PRK00278 147 EQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNL--------KTFEVDLE----TTERLAPLIPSDRLV 214 (260)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCc--------ccccCCHH----HHHHHHHhCCCCCEE
Confidence 366666665555567789999999999999999999987652 11 12233333 33445554443 234
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
|+= |+. .+++++ .++. +.|||+|-+-
T Consensus 215 Iae---gGI-~t~ed~----~~~~-~~Gad~vlVG 240 (260)
T PRK00278 215 VSE---SGI-FTPEDL----KRLA-KAGADAVLVG 240 (260)
T ss_pred EEE---eCC-CCHHHH----HHHH-HcCCCEEEEC
Confidence 542 344 478887 5555 6899999774
No 381
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=72.31 E-value=32 Score=34.46 Aligned_cols=112 Identities=16% Similarity=0.153 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCCCEEEeCcch-hhhhccCCCCccCCHHHHHHHHHHHHcccCCCc---EEeeCCCCCCcCCHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSA-AMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL---LVGDLPFGTYESSTNQAVDTAV 177 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSl-gmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~f---vVaDmPfgsY~~s~e~Av~nA~ 177 (243)
.+-|...+++|++.|=++.+. =-+++++-...| .+..+++++..|++. +.-..-.-+|..-+++.++..+
T Consensus 38 l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edp------werlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv 111 (468)
T PRK12581 38 LPVLTILDKIGYYSLECWGGATFDACIRFLNEDP------WERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFI 111 (468)
T ss_pred HHHHHHHHhcCCCEEEecCCcchhhhhcccCCCH------HHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHH
Confidence 346788999999999654333 236677766544 233345555555543 2333222245444688888888
Q ss_pred HHHHHhCCCEEEeCCCCCc---hHHHHHHHHHcCCceeeccCCcc
Q 026125 178 RILKEGGMDAIKLEGGSPS---RITAARGIVEAGIAVMGHVGLTP 219 (243)
Q Consensus 178 Rl~keaGAdaVKLEGg~~~---~~~~i~~L~~~GIPV~GHiGLtP 219 (243)
+...+.|.|.+.+=+.... ....|+...+.|.-|.+=|+.|=
T Consensus 112 ~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~ 156 (468)
T PRK12581 112 SLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTT 156 (468)
T ss_pred HHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEe
Confidence 8888899999999887433 33557788889988887777653
No 382
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=72.23 E-value=43 Score=32.09 Aligned_cols=130 Identities=9% Similarity=0.053 Sum_probs=70.6
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE-EeC-c--chhhhhccC----CCCccCCHH----HHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC-LVG-D--SAAMVVHGH----DTTLPITLE----EMLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI-LVG-D--Slgmv~lG~----~dT~~vTld----eMi~h~ 144 (243)
+.+|..++.+..+.= .-.|+.|.+||+|.| +=+ . =+...+--. .|--.=+++ -.++..
T Consensus 132 ~~mt~~eI~~ii~~f----------~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii 201 (361)
T cd04747 132 REMTEADIDDVIAAF----------ARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVV 201 (361)
T ss_pred ccCCHHHHHHHHHHH----------HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 568888888875421 246888999999999 322 1 111111001 111111333 345666
Q ss_pred HHHHcccCCCcEE-eeC------CCC-CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHH-cC
Q 026125 145 RAVARGAKRPLLV-GDL------PFG-TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVE-AG 208 (243)
Q Consensus 145 ~aV~Rga~~~fvV-aDm------Pfg-sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~-~G 208 (243)
++|+..++.-|.| .=+ +|+ ..+.++++.++-+..+. +.|+|.|.+-.|... ....++.+.+ -+
T Consensus 202 ~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~-~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~ 280 (361)
T cd04747 202 KAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLV-DAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTG 280 (361)
T ss_pred HHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHH-HcCCCEEEecCCCccCCCcCccchhHHHHHHHHcC
Confidence 7888877544322 222 121 11247888888776655 689999999776210 0112222222 26
Q ss_pred CceeeccCC
Q 026125 209 IAVMGHVGL 217 (243)
Q Consensus 209 IPV~GHiGL 217 (243)
|||++-=|+
T Consensus 281 ~pv~~~G~i 289 (361)
T cd04747 281 LPTITVGSV 289 (361)
T ss_pred CCEEEECCc
Confidence 899886554
No 383
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=72.19 E-value=35 Score=32.60 Aligned_cols=67 Identities=30% Similarity=0.487 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcccCCCcEE---eeCC--CCC---CcCCHHHHHHHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHH
Q 026125 137 LEEMLVHCRAVARGAKRPLLV---GDLP--FGT---YESSTNQAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVE 206 (243)
Q Consensus 137 ldeMi~h~~aV~Rga~~~fvV---aDmP--fgs---Y~~s~e~Av~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~ 206 (243)
-|+|..|.+.+.+-++..+.+ +.+| ||+ |..+|++--.....+.+++|+ +|=||. ...++-|++|.+
T Consensus 232 p~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g~~~~Y~~~p~~~a~~~~~f~~~g~v---nIvGGCCGTTPeHIraia~ 307 (311)
T COG0646 232 PDEMRPHLRELSRIADAFVSVYPNAGLPNAFGERAVYDLTPEYMAEALAEFAEEGGV---NIVGGCCGTTPEHIRAIAE 307 (311)
T ss_pred HHHHHHHHHHHHhccCceEEEeCCCCCCcccCCccccCCCHHHHHHHHHHHHHhCCc---eeeccccCCCHHHHHHHHH
Confidence 489999999998866544333 5666 667 988998877777778876554 555772 345666788876
No 384
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=72.18 E-value=35 Score=30.05 Aligned_cols=78 Identities=13% Similarity=0.073 Sum_probs=50.7
Q ss_pred hCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC--CCcEEeeCCCCCCc
Q 026125 89 KNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK--RPLLVGDLPFGTYE 166 (243)
Q Consensus 89 k~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~--~~fvVaDmPfgsY~ 166 (243)
+.......++|++...+..+.++|+|.+-+ ||+ ..+.++. .+.+++..+ .|+ +|-|+-
T Consensus 101 ~~~~~~~~~G~~t~~E~~~A~~~Gad~vk~----------Fpa-~~~G~~~----l~~l~~~~~~~ipv----vaiGGI- 160 (206)
T PRK09140 101 VALGMVVMPGVATPTEAFAALRAGAQALKL----------FPA-SQLGPAG----IKALRAVLPPDVPV----FAVGGV- 160 (206)
T ss_pred HHCCCcEEcccCCHHHHHHHHHcCCCEEEE----------CCC-CCCCHHH----HHHHHhhcCCCCeE----EEECCC-
Confidence 455677889999999999999999999864 342 2344443 345655553 443 233343
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCC
Q 026125 167 SSTNQAVDTAVRILKEGGMDAIKLEG 192 (243)
Q Consensus 167 ~s~e~Av~nA~Rl~keaGAdaVKLEG 192 (243)
|++ |+..+++ +||++|=+-+
T Consensus 161 -~~~----n~~~~~~-aGa~~vav~s 180 (206)
T PRK09140 161 -TPE----NLAPYLA-AGAAGFGLGS 180 (206)
T ss_pred -CHH----HHHHHHH-CCCeEEEEeh
Confidence 554 4477884 8999987533
No 385
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=72.09 E-value=34 Score=29.15 Aligned_cols=76 Identities=22% Similarity=0.239 Sum_probs=47.3
Q ss_pred cCCHHHHHHHHHHHHccc---CC--CcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-hHHHHHHHHHc
Q 026125 134 PITLEEMLVHCRAVARGA---KR--PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-RITAARGIVEA 207 (243)
Q Consensus 134 ~vTldeMi~h~~aV~Rga---~~--~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-~~~~i~~L~~~ 207 (243)
.--+.+++.......+.. +. -+++.|... +.+...+...+++ +.++|+|-+...... ....++.+.+.
T Consensus 11 ~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~-----~~~~~~~~~~~~~-~~~vdgiIi~~~~~~~~~~~l~~~~~~ 84 (272)
T cd06300 11 NTWRAQMLDEFKAQAKELKKAGLISEFIVTSADG-----DVAQQIADIRNLI-AQGVDAIIINPASPTALNPVIEEACEA 84 (272)
T ss_pred ChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCC-----CHHHHHHHHHHHH-HcCCCEEEEeCCChhhhHHHHHHHHHC
Confidence 334556666666665555 43 345555432 4455555555555 469999999765422 23457888999
Q ss_pred CCceeecc
Q 026125 208 GIAVMGHV 215 (243)
Q Consensus 208 GIPV~GHi 215 (243)
||||+.--
T Consensus 85 ~iPvv~~~ 92 (272)
T cd06300 85 GIPVVSFD 92 (272)
T ss_pred CCeEEEEe
Confidence 99999853
No 386
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=72.01 E-value=86 Score=29.48 Aligned_cols=74 Identities=18% Similarity=0.225 Sum_probs=47.2
Q ss_pred cCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCC-HHHHHHHHHHHHHHhCCCEEEeC----CCCCchHHHHHHHHHcC
Q 026125 134 PITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESS-TNQAVDTAVRILKEGGMDAIKLE----GGSPSRITAARGIVEAG 208 (243)
Q Consensus 134 ~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s-~e~Av~nA~Rl~keaGAdaVKLE----Gg~~~~~~~i~~L~~~G 208 (243)
|+..++. .-.+.+++.++.| |.+|= +. .+ +++. .+++++..+|.|.+. ||-.....+.....+.|
T Consensus 223 P~~~~d~-~~~~~l~~~~~ip-Ia~~E---~~-~~~~~~~----~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~g 292 (368)
T cd03329 223 PLREASI-SSYRWLAEKLDIP-ILGTE---HS-RGALESR----ADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFG 292 (368)
T ss_pred CCCchhH-HHHHHHHhcCCCC-EEccC---cc-cCcHHHH----HHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcC
Confidence 4444443 2233577766666 44553 22 23 5555 677877778998765 77555566677778999
Q ss_pred CceeeccCC
Q 026125 209 IAVMGHVGL 217 (243)
Q Consensus 209 IPV~GHiGL 217 (243)
|+++-|.+.
T Consensus 293 i~~~~h~~~ 301 (368)
T cd03329 293 LDVELHGNG 301 (368)
T ss_pred CEEEEEChH
Confidence 999999763
No 387
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=71.99 E-value=22 Score=33.09 Aligned_cols=114 Identities=27% Similarity=0.407 Sum_probs=61.7
Q ss_pred CCCCHHHHHH---hhhCC--CcEEEE----ecC--CHHHH-----HHHHHcCCCEE-EeCcchhhhhccCCCCccCCHHH
Q 026125 77 QRVTLTHLRQ---KHKNG--EPITMV----TAY--DYPSA-----VHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEE 139 (243)
Q Consensus 77 ~~~tv~~Lr~---~kk~g--~~Itml----TAY--D~~sA-----~iae~AGiDiI-LVGDSlgmv~lG~~dT~~vTlde 139 (243)
..+|+.+... ..++| .++++. ..| +...| ++..|+|+|++ |=|.. +
T Consensus 57 ~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy~~s~e~av~nA~rl~ke~GadaVKlEGg~-----------------~ 119 (261)
T PF02548_consen 57 LPVTLDEMIYHTKAVRRGAPNAFVVADMPFGSYQASPEQAVRNAGRLMKEAGADAVKLEGGA-----------------E 119 (261)
T ss_dssp TT--HHHHHHHHHHHHHH-TSSEEEEE--TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBSG-----------------G
T ss_pred cCcCHHHHHHHHHHHHhcCCCceEEecCCcccccCCHHHHHHHHHHHHHhcCCCEEEeccch-----------------h
Confidence 3567766442 22333 344433 335 55555 78889999999 55521 3
Q ss_pred HHHHHHHHHcccCCCcEEeeCC--------CCCCc---CCHH---HHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHH
Q 026125 140 MLVHCRAVARGAKRPLLVGDLP--------FGTYE---SSTN---QAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIV 205 (243)
Q Consensus 140 Mi~h~~aV~Rga~~~fvVaDmP--------fgsY~---~s~e---~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~ 205 (243)
++...+++.+ +..| |++-+. +|+|. .+.+ +-++.|.+ ++++||-++-||.-.+.. .+.++
T Consensus 120 ~~~~i~~l~~-~GIP-V~gHiGLtPQ~~~~~GGyr~qGk~~~~a~~l~~~A~a-le~AGaf~ivlE~vp~~l---a~~It 193 (261)
T PF02548_consen 120 IAETIKALVD-AGIP-VMGHIGLTPQSVHQLGGYRVQGKTAEEAEKLLEDAKA-LEEAGAFAIVLECVPAEL---AKAIT 193 (261)
T ss_dssp GHHHHHHHHH-TT---EEEEEES-GGGHHHHTSS--CSTSHHHHHHHHHHHHH-HHHHT-SEEEEESBBHHH---HHHHH
T ss_pred HHHHHHHHHH-CCCc-EEEEecCchhheeccCCceEEecCHHHHHHHHHHHHH-HHHcCccEEeeecCHHHH---HHHHH
Confidence 3566666654 2244 676653 34453 2434 34566655 457999999999886433 34454
Q ss_pred H-cCCceee
Q 026125 206 E-AGIAVMG 213 (243)
Q Consensus 206 ~-~GIPV~G 213 (243)
+ --||++|
T Consensus 194 ~~l~IPtIG 202 (261)
T PF02548_consen 194 EALSIPTIG 202 (261)
T ss_dssp HHSSS-EEE
T ss_pred HhCCCCEEe
Confidence 4 4799996
No 388
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=71.88 E-value=32 Score=31.34 Aligned_cols=92 Identities=26% Similarity=0.190 Sum_probs=60.5
Q ss_pred cCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEE
Q 026125 111 AGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIK 189 (243)
Q Consensus 111 AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVK 189 (243)
+|+|-|++..+.|= .-.+|.+|-..-++.+++.++ +..|++.... .|.+++++.+... ++.|||+|-
T Consensus 37 ~Gv~gi~v~GstGE-------~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~----~~t~~ai~~a~~a-~~~Gad~v~ 104 (293)
T PRK04147 37 QGIDGLYVGGSTGE-------AFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS----VNTAEAQELAKYA-TELGYDAIS 104 (293)
T ss_pred CCCCEEEECCCccc-------cccCCHHHHHHHHHHHHHHhCCCCCEEecCCC----CCHHHHHHHHHHH-HHcCCCEEE
Confidence 89999987765543 235788997777776666544 3446675532 3789999988655 479999998
Q ss_pred eCCCCC------chHHHHHHHHH-cCCceeec
Q 026125 190 LEGGSP------SRITAARGIVE-AGIAVMGH 214 (243)
Q Consensus 190 LEGg~~------~~~~~i~~L~~-~GIPV~GH 214 (243)
+--... ....-.+.+.+ .++||+-.
T Consensus 105 v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iY 136 (293)
T PRK04147 105 AVTPFYYPFSFEEICDYYREIIDSADNPMIVY 136 (293)
T ss_pred EeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 765421 12222445555 46888865
No 389
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=71.47 E-value=63 Score=30.05 Aligned_cols=81 Identities=21% Similarity=0.250 Sum_probs=53.2
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
+...|+. .+++..-+.+.+...|..+.++|+|+|+.+ .++.|++-..++.+. + +.++.+.
T Consensus 180 v~~~r~~--~~~~~I~VEv~tleea~eA~~~gaD~I~LD--------------~~~~e~l~~~v~~~~-~-~i~leAs-- 239 (277)
T PRK05742 180 VAAAHRI--APGKPVEVEVESLDELRQALAAGADIVMLD--------------ELSLDDMREAVRLTA-G-RAKLEAS-- 239 (277)
T ss_pred HHHHHHh--CCCCeEEEEeCCHHHHHHHHHcCCCEEEEC--------------CCCHHHHHHHHHHhC-C-CCcEEEE--
Confidence 4455553 345678999999999999999999999774 457777666555442 1 2333222
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
| +.|++++ ..+. +.|+|.|-.
T Consensus 240 --G--GIt~~ni----~~~a-~tGvD~Isv 260 (277)
T PRK05742 240 --G--GINESTL----RVIA-ETGVDYISI 260 (277)
T ss_pred --C--CCCHHHH----HHHH-HcCCCEEEE
Confidence 1 2355554 4555 689999876
No 390
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=71.34 E-value=37 Score=30.24 Aligned_cols=104 Identities=20% Similarity=0.273 Sum_probs=63.9
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
.+..+++.+. +-.|=.=|+.|...|+.+-++|.|.|+.. ..-+|++.+|+ .++. ++
T Consensus 49 ~i~~l~~~~~-~~~vGAGTVl~~~~a~~a~~aGA~FivsP---------------~~~~~v~~~~~--~~~i--~~---- 104 (204)
T TIGR01182 49 AIRLLRKEVP-DALIGAGTVLNPEQLRQAVDAGAQFIVSP---------------GLTPELAKHAQ--DHGI--PI---- 104 (204)
T ss_pred HHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHcCCCEEECC---------------CCCHHHHHHHH--HcCC--cE----
Confidence 3445554331 23344448899999999999999999755 22346676554 2232 32
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCch-HHHHHHHHHcCCceeeccCCcc
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSR-ITAARGIVEAGIAVMGHVGLTP 219 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~-~~~i~~L~~~GIPV~GHiGLtP 219 (243)
+| |.. ++.|+ .+.+ +.||+.||+=-+...- +..+|.|.. +..|+-|+|
T Consensus 105 iP-G~~--TptEi----~~A~-~~Ga~~vKlFPA~~~GG~~yikal~~----plp~i~~~p 153 (204)
T TIGR01182 105 IP-GVA--TPSEI----MLAL-ELGITALKLFPAEVSGGVKMLKALAG----PFPQVRFCP 153 (204)
T ss_pred EC-CCC--CHHHH----HHHH-HCCCCEEEECCchhcCCHHHHHHHhc----cCCCCcEEe
Confidence 23 333 78888 4455 6899999996543221 455777763 335665555
No 391
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=71.33 E-value=42 Score=28.21 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeec
Q 026125 135 ITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 135 vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GH 214 (243)
--+..++...+...+..+..+++.+- . .+++.-.+..-.++ +.++|+|-+..........++.+.++||||+--
T Consensus 12 ~~~~~~~~g~~~~a~~~g~~~~~~~~----~-~~~~~~~~~i~~~~-~~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~ 85 (268)
T cd06289 12 PFFAELAAGLEEVLEEAGYTVFLANS----G-EDVERQEQLLSTML-EHGVAGIILCPAAGTSPDLLKRLAESGIPVVLV 85 (268)
T ss_pred chHHHHHHHHHHHHHHcCCeEEEecC----C-CChHHHHHHHHHHH-HcCCCEEEEeCCCCccHHHHHHHHhcCCCEEEE
Confidence 34566666666665555544444431 1 13343333333344 578999988765332233567888999999864
No 392
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=71.32 E-value=35 Score=31.07 Aligned_cols=99 Identities=23% Similarity=0.309 Sum_probs=57.5
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHH----HHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLV----HCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~----h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
|.-..++|.|+|=||--- ..|+..+++-+|-+. -.+.++.-.+.| |..|. |. + ++++. .+
T Consensus 30 a~~~~~~GAdiIDIG~~s-----t~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT----~~--~-~v~e~---al 93 (257)
T cd00739 30 AEKMIAEGADIIDIGGES-----TRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDT----FR--A-EVARA---AL 93 (257)
T ss_pred HHHHHHCCCCEEEECCCc-----CCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeC----CC--H-HHHHH---HH
Confidence 344568899999887311 123344555555443 356666544444 67884 42 2 33333 34
Q ss_pred HHhCCCEEE-eCCCCCchHHHHHHHHHcCCceee-ccCCcccc
Q 026125 181 KEGGMDAIK-LEGGSPSRITAARGIVEAGIAVMG-HVGLTPQA 221 (243)
Q Consensus 181 keaGAdaVK-LEGg~~~~~~~i~~L~~~GIPV~G-HiGLtPQ~ 221 (243)
+ .|++.|+ +.|+... +.+++-+.+.|.||+. |..=+|++
T Consensus 94 ~-~G~~iINdisg~~~~-~~~~~l~~~~~~~vV~m~~~g~p~~ 134 (257)
T cd00739 94 E-AGADIINDVSGGSDD-PAMLEVAAEYGAPLVLMHMRGTPKT 134 (257)
T ss_pred H-hCCCEEEeCCCCCCC-hHHHHHHHHcCCCEEEECCCCCCcc
Confidence 3 4899999 7776432 4556667788999876 43225554
No 393
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=71.30 E-value=30 Score=29.78 Aligned_cols=79 Identities=20% Similarity=0.154 Sum_probs=47.5
Q ss_pred cCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceee
Q 026125 134 PITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMG 213 (243)
Q Consensus 134 ~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~G 213 (243)
.--+.+|+...+...+....-+++.+. .++ .+.++-.+. .+.+...++|+|-+.+........++.+.+.||||+-
T Consensus 11 ~~f~~~~~~gi~~~a~~~g~~~~~~~~--~~~-~~~~~~~~~-i~~~~~~~vdgiI~~~~~~~~~~~~~~~~~~giPvV~ 86 (268)
T cd06306 11 DAYWLSVNYGMVEEAKRLGVSLKLLEA--GGY-PNLAKQIAQ-LEDCAAWGADAILLGAVSPDGLNEILQQVAASIPVIA 86 (268)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEecC--CCC-CCHHHHHHH-HHHHHHcCCCEEEEcCCChhhHHHHHHHHHCCCCEEE
Confidence 345677887777777766666666543 122 133333333 3333357899999976532211135778899999987
Q ss_pred ccC
Q 026125 214 HVG 216 (243)
Q Consensus 214 HiG 216 (243)
.-.
T Consensus 87 ~~~ 89 (268)
T cd06306 87 LVN 89 (268)
T ss_pred ecc
Confidence 644
No 394
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=71.12 E-value=63 Score=29.38 Aligned_cols=123 Identities=16% Similarity=0.085 Sum_probs=71.9
Q ss_pred CCCcEEEEecCCHHHHHHH------HHcCCC--EEEeCcchhhhhccCCCC--ccCCHHHHHHHHHHHHcccCC-CcEEe
Q 026125 90 NGEPITMVTAYDYPSAVHL------DSAGID--ICLVGDSAAMVVHGHDTT--LPITLEEMLVHCRAVARGAKR-PLLVG 158 (243)
Q Consensus 90 ~g~~ItmlTAYD~~sA~ia------e~AGiD--iILVGDSlgmv~lG~~dT--~~vTldeMi~h~~aV~Rga~~-~fvVa 158 (243)
+-++|.-+||.|.....+. .++|++ ++|.||.... |.+.. ..-.--+++.. +++-.+. ..=++
T Consensus 58 g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~---~~~~~~~~f~~a~~Li~~---i~~~~~~f~ig~a 131 (272)
T TIGR00676 58 GIPTVPHLTCIGATREEIREILREYRELGIRHILALRGDPPKG---EGTPTPGGFNYASELVEF---IRNEFGDFDIGVA 131 (272)
T ss_pred CCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCC---CCCCCCCCCCCHHHHHHH---HHHhcCCeeEEEE
Confidence 4488999999998766543 478999 5579997753 21121 11233344543 3333222 22237
Q ss_pred eCCCCCCcC-CHHHHHHHHHHHHHHhCCCEEEeCCCCCc--hHHHHHHHHHcCCceeeccCCcc
Q 026125 159 DLPFGTYES-STNQAVDTAVRILKEGGMDAIKLEGGSPS--RITAARGIVEAGIAVMGHVGLTP 219 (243)
Q Consensus 159 DmPfgsY~~-s~e~Av~nA~Rl~keaGAdaVKLEGg~~~--~~~~i~~L~~~GIPV~GHiGLtP 219 (243)
--|++..+. +.++-++.-.+-+ ++||+-+.-.=.... ....++.+.++||.|-=+.|+.|
T Consensus 132 ~~Peghp~~~~~~~~~~~L~~K~-~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~~PIi~Gi~p 194 (272)
T TIGR00676 132 AYPEKHPEAPNLEEDIENLKRKV-DAGADYAITQLFFDNDDYYRFVDRCRAAGIDVPIIPGIMP 194 (272)
T ss_pred eCCCCCCCCCCHHHHHHHHHHHH-HcCCCeEeeccccCHHHHHHHHHHHHHcCCCCCEecccCC
Confidence 778876654 3334445444444 689998766544321 22344556677777666788887
No 395
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=71.12 E-value=6.9 Score=37.21 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=28.5
Q ss_pred CcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 026125 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (243)
Q Consensus 154 ~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEG 192 (243)
+|||+.+.- .+..+.+.|.+-. +..+++||||||+.=
T Consensus 1 ~~iIAEig~-NH~Gdl~~A~~lI-~~A~~aGadaVKfQt 37 (329)
T TIGR03569 1 TFIIAEAGV-NHNGSLELAKKLV-DAAAEAGADAVKFQT 37 (329)
T ss_pred CEEEEEeCC-CccCcHHHHHHHH-HHHHHhCCCEEEeee
Confidence 588999988 5656888886654 455689999999984
No 396
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=71.10 E-value=20 Score=36.73 Aligned_cols=71 Identities=21% Similarity=0.275 Sum_probs=51.0
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
..|+.+.++|+|.|.+-|+.|. .+-+++-..++++++..+.+ +.+.+ |.+..-++.|+...+ +
T Consensus 158 ~~a~~l~~~Gad~I~i~Dt~G~----------~~P~~~~~lv~~lk~~~~~p-----i~~H~-Hnt~Gla~An~laAv-~ 220 (592)
T PRK09282 158 ELAKELEEMGCDSICIKDMAGL----------LTPYAAYELVKALKEEVDLP-----VQLHS-HCTSGLAPMTYLKAV-E 220 (592)
T ss_pred HHHHHHHHcCCCEEEECCcCCC----------cCHHHHHHHHHHHHHhCCCe-----EEEEE-cCCCCcHHHHHHHHH-H
Confidence 4577788899999999988865 45566667777787766433 22323 356677899999999 5
Q ss_pred hCCCEEEe
Q 026125 183 GGMDAIKL 190 (243)
Q Consensus 183 aGAdaVKL 190 (243)
+||+.|-.
T Consensus 221 aGad~vD~ 228 (592)
T PRK09282 221 AGVDIIDT 228 (592)
T ss_pred hCCCEEEe
Confidence 89998764
No 397
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=70.99 E-value=65 Score=30.93 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=60.4
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
.+...|++. +..+|+..++++...+.-|.+.|+|.|.+|=-.... -.|+..+..++.+ +.+++..+.|++.
T Consensus 229 ~~~~aR~ll-g~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~--tKp~~~~~Gle~l----~~~~~~~~iPv~A-- 299 (347)
T PRK02615 229 PLAVARQLL-GPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTP--TKPGKAPAGLEYL----KYAAKEAPIPWFA-- 299 (347)
T ss_pred CHHHHHHhc-CCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCC--CCCCCCCCCHHHH----HHHHHhCCCCEEE--
Confidence 345556553 456899999999999999999999999988322111 1223335555543 3344555666432
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
.|+- +++++ .+++ ++|+++|=+-+.
T Consensus 300 --iGGI--~~~ni----~~l~-~~Ga~gVAvisa 324 (347)
T PRK02615 300 --IGGI--DKSNI----PEVL-QAGAKRVAVVRA 324 (347)
T ss_pred --ECCC--CHHHH----HHHH-HcCCcEEEEeHH
Confidence 2343 55544 5555 689999988665
No 398
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=70.91 E-value=42 Score=28.26 Aligned_cols=93 Identities=17% Similarity=0.320 Sum_probs=57.6
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE-
Q 026125 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV- 157 (243)
Q Consensus 79 ~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV- 157 (243)
....+.++.. ....+.-.+|++...++.+++.|+|.+.+|--... .-.|+..+..++.. +.+++..+.|.+.
T Consensus 83 ~~~~~~r~~~-~~~~~ig~S~h~~~e~~~a~~~g~dYv~~gpvf~T--~sk~~~~~~g~~~l----~~~~~~~~~pv~Al 155 (180)
T PF02581_consen 83 LPPAEARKLL-GPDKIIGASCHSLEEAREAEELGADYVFLGPVFPT--SSKPGAPPLGLDGL----REIARASPIPVYAL 155 (180)
T ss_dssp SSHHHHHHHH-TTTSEEEEEESSHHHHHHHHHCTTSEEEEETSS----SSSSS-TTCHHHHH----HHHHHHTSSCEEEE
T ss_pred cchHHhhhhc-ccceEEEeecCcHHHHHHhhhcCCCEEEECCccCC--CCCccccccCHHHH----HHHHHhCCCCEEEE
Confidence 3466666654 44678889999999999999999999998843322 22444556667764 3455666667443
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
+.+ ++++. ..+. +.||++|=+
T Consensus 156 GGI-------~~~~i----~~l~-~~Ga~gvAv 176 (180)
T PF02581_consen 156 GGI-------TPENI----PELR-EAGADGVAV 176 (180)
T ss_dssp SS---------TTTH----HHHH-HTT-SEEEE
T ss_pred cCC-------CHHHH----HHHH-HcCCCEEEE
Confidence 322 33333 3334 689998754
No 399
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=70.84 E-value=1e+02 Score=29.63 Aligned_cols=89 Identities=16% Similarity=0.166 Sum_probs=53.7
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
+..|++.+++-...++.+++|..++..+++. +|++-+|... ++--+++. ++. .++.|.++ --
T Consensus 171 l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~-vd~lkI~s~~------------~~n~~LL~---~~a-~~gkPVil-k~ 232 (360)
T PRK12595 171 LKILKQVADEYGLAVISEIVNPADVEVALDY-VDVIQIGARN------------MQNFELLK---AAG-RVNKPVLL-KR 232 (360)
T ss_pred HHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh-CCeEEECccc------------ccCHHHHH---HHH-ccCCcEEE-eC
Confidence 3345554555556678899999999999999 9999999433 12223443 443 34566433 33
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCC-CEEEeC
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGM-DAIKLE 191 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGA-daVKLE 191 (243)
+. + .+.++... |+..+.+.|. +.+-||
T Consensus 233 G~--~-~t~~e~~~-Ave~i~~~Gn~~i~L~e 260 (360)
T PRK12595 233 GL--S-ATIEEFIY-AAEYIMSQGNGQIILCE 260 (360)
T ss_pred CC--C-CCHHHHHH-HHHHHHHCCCCCEEEEC
Confidence 32 2 24555443 3444445666 577788
No 400
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=70.83 E-value=49 Score=30.88 Aligned_cols=108 Identities=19% Similarity=0.259 Sum_probs=69.9
Q ss_pred CCCcEEEE--ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCC-cEE-ee------
Q 026125 90 NGEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP-LLV-GD------ 159 (243)
Q Consensus 90 ~g~~Itml--TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~-fvV-aD------ 159 (243)
.+-|+.+= -+.|+.....+-++||+-+.+--| ..++||=+..++.|++-+... .-| +-
T Consensus 73 ~~VPValHLDH~~~~e~i~~ai~~GftSVMiDgS------------~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg 140 (284)
T PRK12737 73 YNIPLALHLDHHEDLDDIKKKVRAGIRSVMIDGS------------HLSFEENIAIVKEVVEFCHRYDASVEAELGRLGG 140 (284)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCeEEecCC------------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccC
Confidence 34564443 467888888888889887766433 358999999999988755321 111 11
Q ss_pred CCC--------CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC---------CchHHHHHHHHHc-CCceeec
Q 026125 160 LPF--------GTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---------PSRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 160 mPf--------gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~---------~~~~~~i~~L~~~-GIPV~GH 214 (243)
-.. ..| ++||+| .+|+++.|+|++=+.=|. ....++++.|.+. +||.+=|
T Consensus 141 ~e~~~~~~~~~~~~-T~peeA----~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlH 208 (284)
T PRK12737 141 QEDDLVVDEKDAMY-TNPDAA----AEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLH 208 (284)
T ss_pred ccCCcccccccccC-CCHHHH----HHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEe
Confidence 111 126 689998 789999999987665442 1233445666554 7888877
No 401
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=70.81 E-value=30 Score=33.04 Aligned_cols=86 Identities=15% Similarity=0.136 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHH---HHHHHHHHcccCCCcEEe--eCCCCC-------CcC
Q 026125 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEM---LVHCRAVARGAKRPLLVG--DLPFGT-------YES 167 (243)
Q Consensus 100 YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeM---i~h~~aV~Rga~~~fvVa--DmPfgs-------Y~~ 167 (243)
.+..+..-+-+.|.|++-+= +.+| +|..+-.-++| +..+..=|+....||++- =-|.+. |..
T Consensus 107 ~~~~sve~a~~~GAdAVk~l-----v~~~-~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~ 180 (340)
T PRK12858 107 LDNWSVRRIKEAGADAVKLL-----LYYR-PDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAK 180 (340)
T ss_pred cccccHHHHHHcCCCEEEEE-----EEeC-CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccc
Confidence 34445666778899977442 3344 33221112333 444444556677887762 122222 211
Q ss_pred CHHHHHHHHHHHHH--HhCCCEEEeC
Q 026125 168 STNQAVDTAVRILK--EGGMDAIKLE 191 (243)
Q Consensus 168 s~e~Av~nA~Rl~k--eaGAdaVKLE 191 (243)
...+.+..|.|..- |.|||.+|+|
T Consensus 181 ~~p~~V~~a~r~~~~~elGaDvlKve 206 (340)
T PRK12858 181 VKPEKVIKTMEEFSKPRYGVDVLKVE 206 (340)
T ss_pred cCHHHHHHHHHHHhhhccCCeEEEee
Confidence 22356666667666 5999999996
No 402
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=70.67 E-value=68 Score=28.45 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=53.0
Q ss_pred HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC-CcEEee---------CCCCCCcCCHHHHHHH
Q 026125 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR-PLLVGD---------LPFGTYESSTNQAVDT 175 (243)
Q Consensus 106 ~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~-~fvVaD---------mPfgsY~~s~e~Av~n 175 (243)
..+.++|+|++-|=-..| .+|+.-+..+.+-... .++.+| +-...|..+.++.+.+
T Consensus 74 ~~~~~~gad~itvH~~ag--------------~~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~~~~~~~~~~~~v~~ 139 (230)
T PRK00230 74 RALAKLGVDMVNVHASGG--------------PRMMKAAREALEPKSRPLLIAVTVLTSMDEEDLAELGINLSLEEQVLR 139 (230)
T ss_pred HHHHHcCCCEEEEcccCC--------------HHHHHHHHHHhhccCCCeEEEEEECCCCCHHHHHhCcCCCCHHHHHHH
Confidence 335689999886532221 3455544444332111 133334 2123455566788888
Q ss_pred HHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCC-ceeeccC
Q 026125 176 AVRILKEGGMDAIKLEGGSPSRITAARGIVEAGI-AVMGHVG 216 (243)
Q Consensus 176 A~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GI-PV~GHiG 216 (243)
..|..++.|+|+|++..-. ...++.+...+. -|.+-|+
T Consensus 140 ~a~~a~~~g~dgvv~~~~~---~~~ir~~~~~~~~~v~pGI~ 178 (230)
T PRK00230 140 LAKLAQEAGLDGVVCSAQE---AAAIREATGPDFLLVTPGIR 178 (230)
T ss_pred HHHHHHHcCCeEEEeChHH---HHHHHhhcCCceEEEcCCcC
Confidence 8899889999999996432 233565654433 4445554
No 403
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=70.54 E-value=1.1e+02 Score=29.68 Aligned_cols=123 Identities=15% Similarity=0.177 Sum_probs=84.2
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 026125 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 79 ~tv~~-Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~ 152 (243)
+|+.+ |++.++++--+-..++|++.+++ .||+.+.++|| +..+. .-. ..++.+...+++.++-++
T Consensus 4 v~~k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~-~~~--------~g~~~~~~~v~~~ae~~~ 74 (347)
T PRK13399 4 ITLRQLLDHAAENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGA-RKY--------AGDAMLRHMVLAAAEMYP 74 (347)
T ss_pred ccHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcch-hhh--------CCHHHHHHHHHHHHHhcC
Confidence 45555 44566788889999999999986 56888999987 44322 222 235566677777776664
Q ss_pred -CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc--------------hHHHHHHHHHcCCceeeccCC
Q 026125 153 -RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS--------------RITAARGIVEAGIAVMGHVGL 217 (243)
Q Consensus 153 -~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~--------------~~~~i~~L~~~GIPV~GHiGL 217 (243)
-| |+.-|..+. +.+.. .+.+ ++|.+.|.+.|+..- +-.+++.--..||+|=|=||-
T Consensus 75 ~VP-VaLHLDHg~---~~e~i----~~Ai-~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~ 145 (347)
T PRK13399 75 DIP-ICLHQDHGN---SPATC----QSAI-RSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGC 145 (347)
T ss_pred CCc-EEEECCCCC---CHHHH----HHHH-hcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeee
Confidence 45 778887842 44543 5556 489999999887431 224556666789999888887
Q ss_pred cc
Q 026125 218 TP 219 (243)
Q Consensus 218 tP 219 (243)
++
T Consensus 146 ig 147 (347)
T PRK13399 146 LG 147 (347)
T ss_pred cc
Confidence 76
No 404
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=70.42 E-value=51 Score=27.97 Aligned_cols=79 Identities=10% Similarity=0.098 Sum_probs=49.5
Q ss_pred CCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCC
Q 026125 130 DTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGI 209 (243)
Q Consensus 130 ~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GI 209 (243)
|+...--+.+++.......+-.+..+++.+. + .+.+.-. ...+.+...++|+|-+.+.... ...++.+.++||
T Consensus 7 p~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~----~-~~~~~~~-~~i~~l~~~~~dgiii~~~~~~-~~~~~~~~~~~i 79 (265)
T cd06285 7 PRLTDTVMATMYEGIEEAAAERGYSTFVANT----G-DNPDAQR-RAIEMLLDRRVDGLILGDARSD-DHFLDELTRRGV 79 (265)
T ss_pred CCCCCccHHHHHHHHHHHHHHCCCEEEEEeC----C-CCHHHHH-HHHHHHHHcCCCEEEEecCCCC-hHHHHHHHHcCC
Confidence 4444556778888777777766655555442 2 1333222 2334444688999999765433 344688899999
Q ss_pred ceeecc
Q 026125 210 AVMGHV 215 (243)
Q Consensus 210 PV~GHi 215 (243)
||+-.-
T Consensus 80 Pvv~~~ 85 (265)
T cd06285 80 PFVLVL 85 (265)
T ss_pred CEEEEc
Confidence 998653
No 405
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=70.41 E-value=66 Score=27.26 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=47.9
Q ss_pred HHHHHHh-hhCCCcEEE---EecCCH-HHHHHHHHcCCCEEEeCcchhhhhccCC--CCccCCHHHHHHHHHHHHcccCC
Q 026125 81 LTHLRQK-HKNGEPITM---VTAYDY-PSAVHLDSAGIDICLVGDSAAMVVHGHD--TTLPITLEEMLVHCRAVARGAKR 153 (243)
Q Consensus 81 v~~Lr~~-kk~g~~Itm---lTAYD~-~sA~iae~AGiDiILVGDSlgmv~lG~~--dT~~vTldeMi~h~~aV~Rga~~ 153 (243)
+..+.+. ++.|-+ ++ ++..+. ..++.+.+.|+|++.+.- |+. ...+..++ ..+.+++..+.
T Consensus 91 ~~~~i~~~~~~g~~-~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p-------g~~~~~~~~~~~~----~i~~l~~~~~~ 158 (206)
T TIGR03128 91 IKGAVKAAKKHGKE-VQVDLINVKDKVKRAKELKELGADYIGVHT-------GLDEQAKGQNPFE----DLQTILKLVKE 158 (206)
T ss_pred HHHHHHHHHHcCCE-EEEEecCCCChHHHHHHHHHcCCCEEEEcC-------CcCcccCCCCCHH----HHHHHHHhcCC
Confidence 4444443 334433 44 354443 466767788999886631 222 11223333 33445555555
Q ss_pred CcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 154 ~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
+.+.+| |+- ++++. ..++ +.||++|-+-
T Consensus 159 ~~i~v~---GGI--~~~n~----~~~~-~~Ga~~v~vG 186 (206)
T TIGR03128 159 ARVAVA---GGI--NLDTI----PDVI-KLGPDIVIVG 186 (206)
T ss_pred CcEEEE---CCc--CHHHH----HHHH-HcCCCEEEEe
Confidence 555556 444 44443 5666 5899988773
No 406
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=70.38 E-value=35 Score=31.72 Aligned_cols=77 Identities=13% Similarity=-0.004 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHH-HcCCceeec
Q 026125 136 TLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIV-EAGIAVMGH 214 (243)
Q Consensus 136 TldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~-~~GIPV~GH 214 (243)
+.++-+.++++|++..+..-+..|.- ++| |+++|++.+.++-++.+.+.-.+|.-...... .+.|. +.+|||+.-
T Consensus 140 ~~~~d~~~i~~vr~~~~~~~l~vDaN-~~w--~~~~A~~~~~~l~~~~~~~i~~iEqP~~~~~~-~~~l~~~~~~PIa~D 215 (322)
T PRK05105 140 EAVRDGMLVNLLLEAIPDLKLRLDAN-RGW--TLEKAQQFAKYVPPDYRHRIAFLEEPCKTPDD-SRAFARATGIAIAWD 215 (322)
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEECC-CCC--CHHHHHHHHHHhhhhcCCCccEEECCCCCHHH-HHHHHHhCCCCEEEC
Confidence 45677899999998877777889984 678 78999888766542234566688876432333 34453 557999875
Q ss_pred cC
Q 026125 215 VG 216 (243)
Q Consensus 215 iG 216 (243)
=-
T Consensus 216 Es 217 (322)
T PRK05105 216 ES 217 (322)
T ss_pred CC
Confidence 43
No 407
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=70.38 E-value=59 Score=28.99 Aligned_cols=112 Identities=13% Similarity=0.085 Sum_probs=63.3
Q ss_pred cEEEEecCC------HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHH-----HHHHHHHcccCCCcE-EeeC
Q 026125 93 PITMVTAYD------YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEML-----VHCRAVARGAKRPLL-VGDL 160 (243)
Q Consensus 93 ~ItmlTAYD------~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi-----~h~~aV~Rga~~~fv-VaDm 160 (243)
.|.-+|+=| ...+...+++ +|+|=+|=+.......-+.... +.+..+ ..+++|++.++.|++ ++-+
T Consensus 6 ~i~y~~~G~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~-~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~ 83 (244)
T PRK13125 6 LVVYLTAGYPNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRK-SHRKVKGLDIWPLLEEVRKDVSVPIILMTYL 83 (244)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHH-HHHHHHHcCcHHHHHHHhccCCCCEEEEEec
Confidence 455556533 2345556677 9999666554443222111111 112222 577888887777753 2333
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC----CchHHHHHHHHHcCCcee
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS----PSRITAARGIVEAGIAVM 212 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~----~~~~~~i~~L~~~GIPV~ 212 (243)
.- |..++++-+ +.++++|+|+|-+=+-. +....+++.+.+.|+.+.
T Consensus 84 n~--~~~~~~~~i----~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~ 133 (244)
T PRK13125 84 ED--YVDSLDNFL----NMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPV 133 (244)
T ss_pred ch--hhhCHHHHH----HHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEE
Confidence 32 123566653 34457999999986421 334566788899998765
No 408
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=70.33 E-value=36 Score=28.86 Aligned_cols=79 Identities=20% Similarity=0.109 Sum_probs=51.3
Q ss_pred CCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-hHHHHHHHHHcC
Q 026125 130 DTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-RITAARGIVEAG 208 (243)
Q Consensus 130 ~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-~~~~i~~L~~~G 208 (243)
||...--+.+++...+...+..+.-+++.+.. + +++.-.+....++ ..++|++-+.+.... ....++.+.+.|
T Consensus 7 ~~~~~~~~~~~~~~i~~~~~~~g~~~~i~~~~---~--~~~~~~~~~~~~~-~~~vdgiii~~~~~~~~~~~~~~~~~~~ 80 (267)
T cd06322 7 LTQQHPFYIELANAMKEEAKKQKVNLIVSIAN---Q--DLNKQLSDVEDFI-TKKVDAIVLSPVDSKGIRAAIAKAKKAG 80 (267)
T ss_pred cCcccHHHHHHHHHHHHHHHhcCCEEEEecCC---C--CHHHHHHHHHHHH-HcCCCEEEEcCCChhhhHHHHHHHHHCC
Confidence 44444556778888888888777776666532 2 3444433334445 468999999765321 234468888999
Q ss_pred Cceeec
Q 026125 209 IAVMGH 214 (243)
Q Consensus 209 IPV~GH 214 (243)
|||+--
T Consensus 81 ipvV~~ 86 (267)
T cd06322 81 IPVITV 86 (267)
T ss_pred CCEEEE
Confidence 999875
No 409
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=70.23 E-value=43 Score=31.68 Aligned_cols=90 Identities=18% Similarity=0.202 Sum_probs=55.5
Q ss_pred CcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhh--------h----------ccC---------CCCccCCHHHHHHHH
Q 026125 92 EPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMV--------V----------HGH---------DTTLPITLEEMLVHC 144 (243)
Q Consensus 92 ~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv--------~----------lG~---------~dT~~vTldeMi~h~ 144 (243)
+.+.|..|-+...|.-+.+.|+|+|-+--+.+.- + .++ .....+.++-+
T Consensus 114 ~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elL---- 189 (287)
T TIGR00343 114 KVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELL---- 189 (287)
T ss_pred CCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHH----
Confidence 5778999999999999999999999532111110 0 000 11123444432
Q ss_pred HHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 145 RAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 145 ~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
+.+++..+.| |.++--|+. .+++++ .+++ +.||++|-+=.+
T Consensus 190 kei~~~~~iP--VV~fAiGGI-~TPedA----a~~m-elGAdGVaVGSa 230 (287)
T TIGR00343 190 LEVLKLGKLP--VVNFAAGGV-ATPADA----ALMM-QLGADGVFVGSG 230 (287)
T ss_pred HHHHHhCCCC--EEEeccCCC-CCHHHH----HHHH-HcCCCEEEEhHH
Confidence 3344545566 333344666 488888 5667 599999988554
No 410
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=70.14 E-value=53 Score=27.01 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeecc
Q 026125 136 TLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHV 215 (243)
Q Consensus 136 TldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHi 215 (243)
...+++.-.+...+-.+..+++.|-.+ +++...+.+.+++. .++|+|-+.+........++.+.+.||||+..-
T Consensus 13 ~~~~~~~g~~~~~~~~g~~l~~~~~~~-----~~~~~~~~~~~~~~-~~~d~ii~~~~~~~~~~~~~~l~~~~ip~v~~~ 86 (264)
T cd01537 13 FFAQVLKGIEEAAKAAGYQVLLANSQN-----DAEKQLSALENLIA-RGVDGIIIAPSDLTAPTIVKLARKAGIPVVLVD 86 (264)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEeCCC-----CHHHHHHHHHHHHH-cCCCEEEEecCCCcchhHHHHhhhcCCCEEEec
Confidence 345566666666655555565665432 44556666666664 589999987765433333688899999999876
Q ss_pred CCccc
Q 026125 216 GLTPQ 220 (243)
Q Consensus 216 GLtPQ 220 (243)
+-.++
T Consensus 87 ~~~~~ 91 (264)
T cd01537 87 RDIPD 91 (264)
T ss_pred cCCCC
Confidence 66554
No 411
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=69.84 E-value=55 Score=26.12 Aligned_cols=91 Identities=16% Similarity=0.114 Sum_probs=52.7
Q ss_pred CEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 114 DICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 114 DiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
.++++|||+. .|+.++..-.+-..+. +.... ....+-+.+..+++. +..+.+....+.+.....|.|-|+-|
T Consensus 2 ~i~~~GDSit---~G~~~~~~~~~~~~l~--~~l~~-~~~~~~v~n~g~~G~--~~~~~~~~l~~~~~~~~pd~v~i~~G 73 (177)
T cd01822 2 TILALGDSLT---AGYGLPPEEGWPALLQ--KRLDA-RGIDVTVINAGVSGD--TTAGGLARLPALLAQHKPDLVILELG 73 (177)
T ss_pred eEEEEccccc---cCcCCCCCCchHHHHH--HHHHH-hCCCeEEEecCcCCc--ccHHHHHHHHHHHHhcCCCEEEEecc
Confidence 4788999984 4554443444444332 11211 124456778888665 34455555555665557888888877
Q ss_pred CCc-------------hHHHHHHHHHcCCcee
Q 026125 194 SPS-------------RITAARGIVEAGIAVM 212 (243)
Q Consensus 194 ~~~-------------~~~~i~~L~~~GIPV~ 212 (243)
... ...+++.+.+.|.+|+
T Consensus 74 ~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vi 105 (177)
T cd01822 74 GNDGLRGIPPDQTRANLRQMIETAQARGAPVL 105 (177)
T ss_pred CcccccCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 432 1345666666777765
No 412
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=69.73 E-value=43 Score=28.45 Aligned_cols=74 Identities=16% Similarity=0.122 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-hHHHHHHHHHcCCceeec
Q 026125 137 LEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-RITAARGIVEAGIAVMGH 214 (243)
Q Consensus 137 ldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-~~~~i~~L~~~GIPV~GH 214 (243)
+.+++...+...+..+..+++.+-.. . .+++...+...+++ ..++|+|-+-+.... ....++.+.+.||||+.-
T Consensus 14 ~~~~~~g~~~~~~~~g~~~~~~~~~~--~-~~~~~~~~~i~~l~-~~~vdgvii~~~~~~~~~~~l~~~~~~~ipvV~~ 88 (273)
T cd06310 14 WQAVKAGAEAAAKELGVKVTFQGPAS--E-TDVAGQVNLLENAI-ARGPDAILLAPTDAKALVPPLKEAKDAGIPVVLI 88 (273)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCcc--C-CCHHHHHHHHHHHH-HhCCCEEEEcCCChhhhHHHHHHHHHCCCCEEEe
Confidence 45667777777776666666665322 1 24554444444455 468999999765432 134578889999999975
No 413
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=69.64 E-value=40 Score=30.36 Aligned_cols=109 Identities=18% Similarity=0.188 Sum_probs=63.5
Q ss_pred CHHHHHHhhhCCCc---EEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 80 TLTHLRQKHKNGEP---ITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 80 tv~~Lr~~kk~g~~---ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
.+.+|++..+++-| |=.=|+.|...|+.+-++|.+.|+.. ..-.|++.+|+ .++ .++
T Consensus 56 ~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP---------------~~~~~v~~~~~--~~~--i~~- 115 (222)
T PRK07114 56 VFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTP---------------LFNPDIAKVCN--RRK--VPY- 115 (222)
T ss_pred HHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECC---------------CCCHHHHHHHH--HcC--CCE-
Confidence 34555443333222 33348899999999999999999865 23346666554 222 232
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH--cCCceeeccCCcc
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE--AGIAVMGHVGLTP 219 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~--~GIPV~GHiGLtP 219 (243)
+ | +. .|+.|+ .+.+ +.|++.||+=-..-.-+..+|+|.. -+||.|.==|++|
T Consensus 116 i---P--G~-~TpsEi----~~A~-~~Ga~~vKlFPA~~~G~~~ikal~~p~p~i~~~ptGGV~~ 169 (222)
T PRK07114 116 S---P--GC-GSLSEI----GYAE-ELGCEIVKLFPGSVYGPGFVKAIKGPMPWTKIMPTGGVEP 169 (222)
T ss_pred e---C--CC-CCHHHH----HHHH-HCCCCEEEECcccccCHHHHHHHhccCCCCeEEeCCCCCc
Confidence 1 1 23 478888 4556 6899999996432122455666652 2344544444444
No 414
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=69.51 E-value=41 Score=28.46 Aligned_cols=73 Identities=18% Similarity=0.113 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-chHHHHHHHHHcCCceeec
Q 026125 136 TLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-SRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 136 TldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-~~~~~i~~L~~~GIPV~GH 214 (243)
-+.+|+..++...+-...-+++.|- . .+++...+..-.++ ..++|+|-+.+... .....++.+.+.||||+..
T Consensus 14 ~~~~~~~g~~~~~~~~g~~~~~~~~----~-~~~~~~~~~~~~l~-~~~vdgiii~~~~~~~~~~~l~~~~~~~iPvV~~ 87 (275)
T cd06317 14 YQTTYNKAFQAAAEEDGVEVIVLDA----N-GDVARQAAQVEDLI-AQKVDGIILWPTDGQAYIPGLRKAKQAGIPVVIT 87 (275)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEcC----C-cCHHHHHHHHHHHH-HcCCCEEEEecCCccccHHHHHHHHHCCCcEEEe
Confidence 4566777777666666656666553 2 25555555544455 56899998876532 2234578899999999854
No 415
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=69.49 E-value=34 Score=31.01 Aligned_cols=94 Identities=19% Similarity=0.165 Sum_probs=59.7
Q ss_pred HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC-CcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 026125 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR-PLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (243)
Q Consensus 107 iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~-~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGA 185 (243)
...+.|+|-+++..|.|- --.+|.+|=..-++.+++.++. ..|++-. ...|.+++++.|... ++.||
T Consensus 30 ~l~~~Gv~gi~~~Gs~GE-------~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv----~~~~~~~~i~~a~~a-~~~G~ 97 (292)
T PRK03170 30 YLIANGTDGLVVVGTTGE-------SPTLTHEEHEELIRAVVEAVNGRVPVIAGT----GSNSTAEAIELTKFA-EKAGA 97 (292)
T ss_pred HHHHcCCCEEEECCcCCc-------cccCCHHHHHHHHHHHHHHhCCCCcEEeec----CCchHHHHHHHHHHH-HHcCC
Confidence 344589999986655543 2367889977777766665542 3355443 224778999888655 57999
Q ss_pred CEEEeCCCC------CchHHHHHHHHHc-CCcee
Q 026125 186 DAIKLEGGS------PSRITAARGIVEA-GIAVM 212 (243)
Q Consensus 186 daVKLEGg~------~~~~~~i~~L~~~-GIPV~ 212 (243)
|+|-+---. +......+.+.++ ++||+
T Consensus 98 d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~ 131 (292)
T PRK03170 98 DGALVVTPYYNKPTQEGLYQHFKAIAEATDLPII 131 (292)
T ss_pred CEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 999884332 1223334556654 68887
No 416
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=69.40 E-value=1.1e+02 Score=29.18 Aligned_cols=113 Identities=15% Similarity=0.273 Sum_probs=73.0
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE--EeCcchhhhhc---cC------CCCccCCHHHHHHHHHHHHc
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC--LVGDSAAMVVH---GH------DTTLPITLEEMLVHCRAVAR 149 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI--LVGDSlgmv~l---G~------~dT~~vTldeMi~h~~aV~R 149 (243)
+.-.+.+.+.|-++-+-.+|+...|.+|.+||++.| .|| -+-.... |. .|.+-..+.+|. +.+++
T Consensus 138 i~A~~~L~~~GI~vn~TlvFS~~Qa~~aa~AGa~~ISPfVg-Ri~d~~~~~~~~~~~~~~~d~Gv~~v~~i~---~~~~~ 213 (313)
T cd00957 138 IQAAKQLEKEGIHCNLTLLFSFAQAVACAEAGVTLISPFVG-RILDWYKKHSGDKAYTAEEDPGVASVKKIY---NYYKK 213 (313)
T ss_pred HHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEeecc-hHHHhhhhccccccCCccCCcHHHHHHHHH---HHHHH
Confidence 566677888999999999999999999999999998 477 2211111 21 111222233332 22322
Q ss_pred -ccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccC
Q 026125 150 -GAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG 216 (243)
Q Consensus 150 -ga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiG 216 (243)
+.+.- |++ .|| .|+++..+ -+|+|.+-+- +.+.+.|.+..-||.-++-
T Consensus 214 ~~~~T~-vma----ASf-Rn~~~v~~-------laG~d~~Ti~------p~ll~~L~~~~~~~~~~l~ 262 (313)
T cd00957 214 FGYKTK-VMG----ASF-RNIGQILA-------LAGCDYLTIS------PALLEELKNSTAKVERKLD 262 (313)
T ss_pred cCCCcE-EEe----ccc-CCHHHHHH-------HhCCCeEEcC------HHHHHHHHhCCCccccccC
Confidence 44443 332 267 58888753 2799999885 5567889988888766653
No 417
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=69.37 E-value=43 Score=34.39 Aligned_cols=110 Identities=17% Similarity=0.127 Sum_probs=70.3
Q ss_pred HHHHHHHHcCCCEEEeCcchhh-hhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC---CCCCcCCHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAM-VVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP---FGTYESSTNQAVDTAVR 178 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgm-v~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP---fgsY~~s~e~Av~nA~R 178 (243)
+-|...+++|++.|=++.+... +.+.+-+. -. .+..+.+++..+++.+..=++ .-+|..-++++++.-++
T Consensus 31 ~ia~~ld~~G~~siE~~GGatf~~~~~~~~e--~p----~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~ 104 (593)
T PRK14040 31 PIAAKLDKVGYWSLESWGGATFDACIRFLGE--DP----WERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVE 104 (593)
T ss_pred HHHHHHHHcCCCEEEecCCcchhhhccccCC--CH----HHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHH
Confidence 3578899999999965322111 12222222 11 455567777777665532223 22454347888888888
Q ss_pred HHHHhCCCEEEeCCCCCc---hHHHHHHHHHcCCceeeccCCc
Q 026125 179 ILKEGGMDAIKLEGGSPS---RITAARGIVEAGIAVMGHVGLT 218 (243)
Q Consensus 179 l~keaGAdaVKLEGg~~~---~~~~i~~L~~~GIPV~GHiGLt 218 (243)
...+.|+|.+.+-+.... ....|+...+.|.-|.|=|.+|
T Consensus 105 ~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt 147 (593)
T PRK14040 105 RAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYT 147 (593)
T ss_pred HHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEe
Confidence 877899999999987533 2345788888999887777663
No 418
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=69.37 E-value=13 Score=36.36 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=50.3
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHh
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~kea 183 (243)
.++.+.++|++.|.++|++|+ .+..++-+..+.+++..++ -+... + -++.+---|+.|+.-.+ ++
T Consensus 151 ~~~~~~~~ga~~i~l~DTvG~----------~~P~~~~~~i~~l~~~v~~-~~~l~--~-H~HnD~G~AvANslaAv-~a 215 (409)
T COG0119 151 VVKAAIEAGADRINLPDTVGV----------ATPNEVADIIEALKANVPN-KVILS--V-HCHNDLGMAVANSLAAV-EA 215 (409)
T ss_pred HHHHHHHcCCcEEEECCCcCc----------cCHHHHHHHHHHHHHhCCC-CCeEE--E-EecCCcchHHHHHHHHH-Hc
Confidence 345566888999999999977 3556666666788887764 11122 2 12356678999999989 58
Q ss_pred CCCEEEe
Q 026125 184 GMDAIKL 190 (243)
Q Consensus 184 GAdaVKL 190 (243)
||+-|..
T Consensus 216 Ga~~v~~ 222 (409)
T COG0119 216 GADQVEG 222 (409)
T ss_pred CCcEEEE
Confidence 9998754
No 419
>TIGR03586 PseI pseudaminic acid synthase.
Probab=69.30 E-value=41 Score=32.02 Aligned_cols=87 Identities=18% Similarity=0.241 Sum_probs=52.0
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg 163 (243)
|.+..++-....+-|+||..++..+++.|+|++-||.. .++--+++.+ |.+ +..| |+-..+..
T Consensus 82 L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~------------~~~n~~LL~~---va~-~gkP-vilstG~~ 144 (327)
T TIGR03586 82 LFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASF------------EITDLPLIRY---VAK-TGKP-IIMSTGIA 144 (327)
T ss_pred HHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCc------------cccCHHHHHH---HHh-cCCc-EEEECCCC
Confidence 33335555677899999999999999999999998832 2233344443 332 3455 44444442
Q ss_pred CCcCCHHHHHHHHHHHHHHhCC-CEEEeCC
Q 026125 164 TYESSTNQAVDTAVRILKEGGM-DAIKLEG 192 (243)
Q Consensus 164 sY~~s~e~Av~nA~Rl~keaGA-daVKLEG 192 (243)
+.++. +.|+..+++.|. +.+-|++
T Consensus 145 ----t~~Ei-~~Av~~i~~~g~~~i~LlhC 169 (327)
T TIGR03586 145 ----TLEEI-QEAVEACREAGCKDLVLLKC 169 (327)
T ss_pred ----CHHHH-HHHHHHHHHCCCCcEEEEec
Confidence 23333 344555556666 4555443
No 420
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=69.27 E-value=1e+02 Score=29.67 Aligned_cols=112 Identities=18% Similarity=0.154 Sum_probs=65.7
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-C-CcEE------eeCCC
Q 026125 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-R-PLLV------GDLPF 162 (243)
Q Consensus 91 g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~-~fvV------aDmPf 162 (243)
+..+..+ +....-...+-++|+|.|.+.-|.+-.. -. .-...|.+|.+...+.+.+-++ . ..+. ..-||
T Consensus 114 ~~~~~~l-~~n~~die~A~~~g~~~v~i~~s~Sd~h-~~-~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~ 190 (347)
T PLN02746 114 GARFPVL-TPNLKGFEAAIAAGAKEVAVFASASESF-SK-SNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI 190 (347)
T ss_pred CCceeEE-cCCHHHHHHHHHcCcCEEEEEEecCHHH-HH-HHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc
Confidence 3445555 3477777788899999874332222110 00 0123567776665544433332 1 1221 33577
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc
Q 026125 163 GTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA 207 (243)
Q Consensus 163 gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~ 207 (243)
.+. .+++..++.+.++. +.||+.|.|-|-.. .+..++++|.+.
T Consensus 191 ~~r-~~~~~l~~~~~~~~-~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~ 238 (347)
T PLN02746 191 EGP-VPPSKVAYVAKELY-DMGCYEISLGDTIGVGTPGTVVPMLEAVMAV 238 (347)
T ss_pred cCC-CCHHHHHHHHHHHH-HcCCCEEEecCCcCCcCHHHHHHHHHHHHHh
Confidence 565 68888888887777 69999999998732 344556766654
No 421
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=69.26 E-value=25 Score=33.09 Aligned_cols=99 Identities=18% Similarity=0.161 Sum_probs=58.2
Q ss_pred HHHHHHcCCCEE-EeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC------CCCcCCHHHHHHHHH
Q 026125 105 AVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF------GTYESSTNQAVDTAV 177 (243)
Q Consensus 105 A~iae~AGiDiI-LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf------gsY~~s~e~Av~nA~ 177 (243)
|+.+.+.|+.-+ ++| |... ...+|.+...++.|++-.|..-+.+=.|. .+.+.+.++. .
T Consensus 88 a~~~~~~G~~~v~l~~--------G~~p--~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~----l 153 (351)
T TIGR03700 88 VKEAYAPGATEVHIVG--------GLHP--NLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEV----L 153 (351)
T ss_pred HHHHHHCCCcEEEEec--------CCCC--CCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHH----H
Confidence 444567898855 443 2211 24578888888999887654433331110 0122344555 4
Q ss_pred HHHHHhCCCEEE---eCCCC--------------CchHHHHHHHHHcCCceeec--cCC
Q 026125 178 RILKEGGMDAIK---LEGGS--------------PSRITAARGIVEAGIAVMGH--VGL 217 (243)
Q Consensus 178 Rl~keaGAdaVK---LEGg~--------------~~~~~~i~~L~~~GIPV~GH--iGL 217 (243)
+.++++|++.+. +|-+. +....+++.+-+.||+|+.+ +|+
T Consensus 154 ~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Gl 212 (351)
T TIGR03700 154 DELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGH 212 (351)
T ss_pred HHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeC
Confidence 566789998775 33221 12235789999999999877 454
No 422
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=69.19 E-value=44 Score=30.31 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=43.1
Q ss_pred CccCCHHHHHHHHHH-HHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH-cCC
Q 026125 132 TLPITLEEMLVHCRA-VARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE-AGI 209 (243)
Q Consensus 132 T~~vTldeMi~h~~a-V~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~-~GI 209 (243)
..-+.++|.+.+... -.+-...+.+.+--|| +.+ ++.+..|.+-+++.|||.|-+..=...... -+.+.+ .|+
T Consensus 129 GVivP~~eQ~~~~~~kW~~l~~~~~~a~asPy---~~~-~~~l~~Aa~~L~~~gadlIvLDCmGYt~~~-r~~~~~~~g~ 203 (221)
T PF07302_consen 129 GVIVPLPEQIAQQAEKWQPLGNPVVVAAASPY---EGD-EEELAAAARELAEQGADLIVLDCMGYTQEM-RDIVQRALGK 203 (221)
T ss_pred EEEecCHHHHHHHHHHHHhcCCCeEEEEeCCC---CCC-HHHHHHHHHHHHhcCCCEEEEECCCCCHHH-HHHHHHHhCC
Confidence 345677777765443 3333334444566677 233 455556666777899999988654332221 122222 588
Q ss_pred cee
Q 026125 210 AVM 212 (243)
Q Consensus 210 PV~ 212 (243)
||.
T Consensus 204 PVl 206 (221)
T PF07302_consen 204 PVL 206 (221)
T ss_pred CEE
Confidence 985
No 423
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=69.19 E-value=29 Score=31.75 Aligned_cols=70 Identities=21% Similarity=0.215 Sum_probs=50.1
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHh
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~kea 183 (243)
.++.+.++|+|.|.+-|++|. .+-.++-...+.+++..+.. .+.|-. +.+.--|+.|+...+ ++
T Consensus 154 ~~~~~~~~Ga~~i~l~DT~G~----------~~P~~v~~lv~~l~~~~~~~----~i~~H~-Hnd~GlA~AN~laA~-~a 217 (274)
T cd07938 154 VAERLLDLGCDEISLGDTIGV----------ATPAQVRRLLEAVLERFPDE----KLALHF-HDTRGQALANILAAL-EA 217 (274)
T ss_pred HHHHHHHcCCCEEEECCCCCc----------cCHHHHHHHHHHHHHHCCCC----eEEEEE-CCCCChHHHHHHHHH-Hh
Confidence 367778899999999988865 45666777777887765421 122222 356678999999999 58
Q ss_pred CCCEEE
Q 026125 184 GMDAIK 189 (243)
Q Consensus 184 GAdaVK 189 (243)
||+.|-
T Consensus 218 Ga~~id 223 (274)
T cd07938 218 GVRRFD 223 (274)
T ss_pred CCCEEE
Confidence 999876
No 424
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=69.17 E-value=12 Score=34.14 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=42.1
Q ss_pred CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeec
Q 026125 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 152 ~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GH 214 (243)
+.-+++.|- +.+++++++++.+|+.+-|+++|---.+......+...+.++|||+++-
T Consensus 42 ~i~lv~~D~-----~~~p~~a~~~a~~li~~d~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~ 99 (357)
T cd06337 42 EVEIIVRDS-----QSNPNRAGLVAQELILTDKVDLLLAGGTPDTTNPVSDQCEANGVPCIST 99 (357)
T ss_pred EEEEEEecC-----CCCHHHHHHHHHHHHhccCccEEEecCCcchhhHHHHHHHHhCCCeEEe
Confidence 345666773 3489999999999997668999975444433334457788999999984
No 425
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=69.09 E-value=39 Score=29.54 Aligned_cols=78 Identities=13% Similarity=0.119 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-hHHHHHHHHHcCCceeec
Q 026125 136 TLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-RITAARGIVEAGIAVMGH 214 (243)
Q Consensus 136 TldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-~~~~i~~L~~~GIPV~GH 214 (243)
-+.+|+.......+.....+++.+... +++.-.+..-.++ +.++|+|-+.+.... ....++.+.+.||||+..
T Consensus 13 ~~~~~~~gi~~~a~~~g~~~~~~~~~~-----~~~~~~~~i~~~~-~~~vdgiii~~~~~~~~~~~l~~l~~~~ipvV~~ 86 (288)
T cd01538 13 RWIRDRPNFEAALKELGAEVIVQNANG-----DPAKQISQIENMI-AKGVDVLVIAPVDGEALASAVEKAADAGIPVIAY 86 (288)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCC-----CHHHHHHHHHHHH-HcCCCEEEEecCChhhHHHHHHHHHHCCCCEEEE
Confidence 356677777777776666666665422 3443322223344 578999999865322 245578899999999876
Q ss_pred cCCcc
Q 026125 215 VGLTP 219 (243)
Q Consensus 215 iGLtP 219 (243)
-.-.|
T Consensus 87 ~~~~~ 91 (288)
T cd01538 87 DRLIL 91 (288)
T ss_pred CCCCC
Confidence 44333
No 426
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=69.07 E-value=12 Score=34.03 Aligned_cols=69 Identities=19% Similarity=0.226 Sum_probs=49.5
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
++.+.++|+|.|...|++|+ .+-+++-..++.+++..+.+ +.| -++.+.--++.|+...+ ++|
T Consensus 147 ~~~~~~~g~~~i~l~Dt~G~----------~~P~~v~~~~~~~~~~~~~~-----i~~-H~Hn~~Gla~an~~~a~-~aG 209 (262)
T cd07948 147 YRAVDKLGVNRVGIADTVGI----------ATPRQVYELVRTLRGVVSCD-----IEF-HGHNDTGCAIANAYAAL-EAG 209 (262)
T ss_pred HHHHHHcCCCEEEECCcCCC----------CCHHHHHHHHHHHHHhcCCe-----EEE-EECCCCChHHHHHHHHH-HhC
Confidence 45667889999999999875 35556667777787766532 233 23467778999999999 589
Q ss_pred CCEEEe
Q 026125 185 MDAIKL 190 (243)
Q Consensus 185 AdaVKL 190 (243)
|+.|--
T Consensus 210 ~~~vd~ 215 (262)
T cd07948 210 ATHIDT 215 (262)
T ss_pred CCEEEE
Confidence 997654
No 427
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=69.02 E-value=56 Score=30.55 Aligned_cols=93 Identities=19% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCC---------CccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDT---------TLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVD 174 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~d---------T~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~ 174 (243)
.|+.++++|+|.|.+.........-.++ .++.-...-+..++.+++..+.|++... +. .|.+++
T Consensus 180 ~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~G----GI-~s~~Da-- 252 (325)
T cd04739 180 MAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASG----GV-HDAEDV-- 252 (325)
T ss_pred HHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEEC----CC-CCHHHH--
Q ss_pred HHHHHHHHhCCCEEEeC-----CCCCchHHHHHHHHH
Q 026125 175 TAVRILKEGGMDAIKLE-----GGSPSRITAARGIVE 206 (243)
Q Consensus 175 nA~Rl~keaGAdaVKLE-----Gg~~~~~~~i~~L~~ 206 (243)
.+++ .+||++|.+= .|......+++.|.+
T Consensus 253 --~e~l-~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~ 286 (325)
T cd04739 253 --VKYL-LAGADVVMTTSALLRHGPDYIGTLLAGLEA 286 (325)
T ss_pred --HHHH-HcCCCeeEEehhhhhcCchHHHHHHHHHHH
No 428
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=68.94 E-value=14 Score=34.43 Aligned_cols=77 Identities=19% Similarity=0.161 Sum_probs=43.6
Q ss_pred HHHHHHHHcCCCEEE-eCcchhhhhc----------cCCCCccCCHHHHHHHHHHHHccc--CCCcEEeeCCCCCCcCCH
Q 026125 103 PSAVHLDSAGIDICL-VGDSAAMVVH----------GHDTTLPITLEEMLVHCRAVARGA--KRPLLVGDLPFGTYESST 169 (243)
Q Consensus 103 ~sA~iae~AGiDiIL-VGDSlgmv~l----------G~~dT~~vTldeMi~h~~aV~Rga--~~~fvVaDmPfgsY~~s~ 169 (243)
..|+.++++|+|.|. .+-..++... |+... ....--+..++.+++.. +.+ |++. |+- .|.
T Consensus 220 ~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~--~~~~~~l~~v~~l~~~~~~~ip-Ii~~---GGI-~t~ 292 (327)
T cd04738 220 DIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGA--PLKERSTEVLRELYKLTGGKIP-IIGV---GGI-SSG 292 (327)
T ss_pred HHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCCh--hhhHHHHHHHHHHHHHhCCCCc-EEEE---CCC-CCH
Confidence 467888999999874 5543333211 22211 11111134455566655 345 4543 345 377
Q ss_pred HHHHHHHHHHHHHhCCCEEEeC
Q 026125 170 NQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 170 e~Av~nA~Rl~keaGAdaVKLE 191 (243)
+++ .+++. +|||+|.+-
T Consensus 293 ~da----~e~l~-aGAd~V~vg 309 (327)
T cd04738 293 EDA----YEKIR-AGASLVQLY 309 (327)
T ss_pred HHH----HHHHH-cCCCHHhcc
Confidence 888 56775 899999884
No 429
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=68.75 E-value=88 Score=28.03 Aligned_cols=75 Identities=20% Similarity=0.288 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHcc-cCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------------chHHHH
Q 026125 136 TLEEMLVHCRAVARG-AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------------SRITAA 201 (243)
Q Consensus 136 TldeMi~h~~aV~Rg-a~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-------------~~~~~i 201 (243)
..|+.+...+...+. .+.| +++.+ + . .++++.++.|.++. +.|+|+|-|--+.. ...+++
T Consensus 81 g~~~~~~~i~~~~~~~~~~p-vi~si-~-g--~~~~~~~~~a~~~~-~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv 154 (289)
T cd02810 81 GLDVWLQDIAKAKKEFPGQP-LIASV-G-G--SSKEDYVELARKIE-RAGAKALELNLSCPNVGGGRQLGQDPEAVANLL 154 (289)
T ss_pred CHHHHHHHHHHHHhccCCCe-EEEEe-c-c--CCHHHHHHHHHHHH-HhCCCEEEEEcCCCCCCCCcccccCHHHHHHHH
Confidence 567666666555544 3445 55554 1 1 26777777776655 67999988743321 123456
Q ss_pred HHHHHc-CCceeeccC
Q 026125 202 RGIVEA-GIAVMGHVG 216 (243)
Q Consensus 202 ~~L~~~-GIPV~GHiG 216 (243)
+++.++ ++||.--++
T Consensus 155 ~~vr~~~~~pv~vKl~ 170 (289)
T cd02810 155 KAVKAAVDIPLLVKLS 170 (289)
T ss_pred HHHHHccCCCEEEEeC
Confidence 666665 788876554
No 430
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=68.73 E-value=64 Score=31.11 Aligned_cols=123 Identities=19% Similarity=0.236 Sum_probs=74.8
Q ss_pred CCCHHHHHHhhh-CCCcEEEEec----CCH-HHHHHHH---HcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHH
Q 026125 78 RVTLTHLRQKHK-NGEPITMVTA----YDY-PSAVHLD---SAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVA 148 (243)
Q Consensus 78 ~~tv~~Lr~~kk-~g~~ItmlTA----YD~-~sA~iae---~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~ 148 (243)
+.-+.-+|++.. .++||++-.. .|. ..|+++. ..|+|.|-.--+++ |--..+++|=+..+..+.
T Consensus 111 ~~Gi~g~R~~lgv~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKdDe~l~-------~~~~~p~~eRv~~v~~av 183 (364)
T cd08210 111 RFGIAGLRALLGIPERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKDDHGLA-------DQPFAPFEERVKACQEAV 183 (364)
T ss_pred CCChHHHHHHhCCCCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeecCcccc-------CccCCCHHHHHHHHHHHH
Confidence 355666776533 4688876543 222 2344443 46999985443332 344678999765555544
Q ss_pred -ccc----CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH-cC-Cceeec
Q 026125 149 -RGA----KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE-AG-IAVMGH 214 (243)
Q Consensus 149 -Rga----~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~-~G-IPV~GH 214 (243)
++. .+.+.++++- ...++.+++|.... +.|++++.+--...- .+.++.|.+ .+ .|+++|
T Consensus 184 ~~a~~eTG~~~~y~~Nit-----a~~~em~~ra~~a~-~~Ga~~vMv~~~~~G-~~~~~~l~~~~~~l~i~aH 249 (364)
T cd08210 184 AEANAETGGRTLYAPNVT-----GPPTQLLERARFAK-EAGAGGVLIAPGLTG-LDTFRELAEDFDFLPILAH 249 (364)
T ss_pred HHHHhhcCCcceEEEecC-----CCHHHHHHHHHHHH-HcCCCEEEeecccch-HHHHHHHHhcCCCcEEEEc
Confidence 444 3566667762 24679999997665 799999999765432 122344444 46 799999
No 431
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=68.71 E-value=35 Score=31.55 Aligned_cols=74 Identities=14% Similarity=0.030 Sum_probs=45.7
Q ss_pred HcCCC-EEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEE
Q 026125 110 SAGID-ICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAI 188 (243)
Q Consensus 110 ~AGiD-iILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaV 188 (243)
++|+| .|.+.|++|.. .|.-.....+++-...+++++..+.|- ..+.+ -++.+.--|+.|+...+ ++||+-|
T Consensus 160 ~~G~~~~i~l~DTvG~a---~P~~~~~~p~~v~~l~~~l~~~~~~p~--~~l~~-H~Hn~~Gla~AN~laA~-~aG~~~v 232 (279)
T cd07947 160 ESGIPVKIRLCDTLGYG---VPYPGASLPRSVPKIIYGLRKDCGVPS--ENLEW-HGHNDFYKAVANAVAAW-LYGASWV 232 (279)
T ss_pred HCCCCEEEEeccCCCcC---CccccccchHHHHHHHHHHHHhcCCCC--ceEEE-EecCCCChHHHHHHHHH-HhCCCEE
Confidence 48999 68899999752 221111122455555566665543221 12233 33568889999999999 5899987
Q ss_pred Ee
Q 026125 189 KL 190 (243)
Q Consensus 189 KL 190 (243)
-.
T Consensus 233 d~ 234 (279)
T cd07947 233 NC 234 (279)
T ss_pred EE
Confidence 54
No 432
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=68.70 E-value=21 Score=30.34 Aligned_cols=61 Identities=23% Similarity=0.288 Sum_probs=43.8
Q ss_pred CCCcEE-eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------chH-HHHHHHHHcCCceeeccC
Q 026125 152 KRPLLV-GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRI-TAARGIVEAGIAVMGHVG 216 (243)
Q Consensus 152 ~~~fvV-aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-------~~~-~~i~~L~~~GIPV~GHiG 216 (243)
+..++. +.++. .+.+++++-..+.+++.|+.+||+.-... ... .+.+.+.+.|+||+=|.|
T Consensus 69 ~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g 138 (273)
T PF04909_consen 69 PDRFIGFAAIPP----PDPEDAVEELERALQELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEELGLPVLIHTG 138 (273)
T ss_dssp TTTEEEEEEETT----TSHHHHHHHHHHHHHTTTESEEEEESSETTCCTTSGHCHHHHHHHHHHHT-EEEEEES
T ss_pred CCCEEEEEEecC----CCchhHHHHHHHhccccceeeeEecCCCCccccccHHHHHHHHHHHHhhccceeeecc
Confidence 333333 56655 23678888888999889999999865421 122 678999999999999988
No 433
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=68.67 E-value=32 Score=31.56 Aligned_cols=90 Identities=24% Similarity=0.336 Sum_probs=53.2
Q ss_pred HHHcCCCEEEeCcchhh-hhccCCCCccCCHHHH-HHHHHHHHcccCC-CcEE-eeCCCCCCcCCHHHHHHHHHHHHHHh
Q 026125 108 LDSAGIDICLVGDSAAM-VVHGHDTTLPITLEEM-LVHCRAVARGAKR-PLLV-GDLPFGTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 108 ae~AGiDiILVGDSlgm-v~lG~~dT~~vTldeM-i~h~~aV~Rga~~-~fvV-aDmPfgsY~~s~e~Av~nA~Rl~kea 183 (243)
.-++|+|+|.+.|+.++ ..++ +-.++|. .-+.+.|.++.+. +.++ .+ | +.... ...+.+.
T Consensus 189 ~~~aGad~I~i~d~~a~~~~ls-----p~~f~ef~~p~~~~i~~~i~~~~~ilH~c---G----~~~~~----l~~~~~~ 252 (339)
T PRK06252 189 QLEAGADVICIADPSASPELLG-----PKMFEEFVLPYLNKIIDEVKGLPTILHIC---G----DLTSI----LEEMADC 252 (339)
T ss_pred HHHcCCCEEEeCCCCccccccC-----HHHHHHHHHHHHHHHHHHhccCCcEEEEC---C----CchHH----HHHHHhc
Confidence 44779999999998754 1222 2234443 3455666666654 2222 11 1 11222 4455678
Q ss_pred CCCEEEeCCCCCchHHHHHHHHHcCCceeecc
Q 026125 184 GMDAIKLEGGSPSRITAARGIVEAGIAVMGHV 215 (243)
Q Consensus 184 GAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHi 215 (243)
|+|++.++.+.. ... .+......+.++|.+
T Consensus 253 g~d~~~~d~~~d-l~~-~~~~~g~~~~i~Gni 282 (339)
T PRK06252 253 GFDGISIDEKVD-VKT-AKENVGDRAALIGNV 282 (339)
T ss_pred CCCeeccCCCCC-HHH-HHHHhCCCeEEEecc
Confidence 999999987753 233 344555669999987
No 434
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=68.61 E-value=10 Score=34.37 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=31.4
Q ss_pred HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 106 ~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
..+.++|.|.|+||.|. .+|-+.|..-.++|++ .+.|.+.
T Consensus 26 ~~~~~~gtdai~vGGS~-----------~vt~~~~~~~v~~ik~-~~lPvil 65 (232)
T PRK04169 26 EAICESGTDAIIVGGSD-----------GVTEENVDELVKAIKE-YDLPVIL 65 (232)
T ss_pred HHHHhcCCCEEEEcCCC-----------ccchHHHHHHHHHHhc-CCCCEEE
Confidence 44667899999999776 4577778888899998 8888554
No 435
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=68.60 E-value=47 Score=29.56 Aligned_cols=95 Identities=21% Similarity=0.203 Sum_probs=58.5
Q ss_pred CHHHHHHhhhCCCcEEEEe-cCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 80 TLTHLRQKHKNGEPITMVT-AYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlT-AYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
.+.+.|+.. ....|.-++ +++.-.|.-+++.|+|.|.+|= +-. -..++..+..++-. +.+++.++.|++..
T Consensus 99 ~~~~~r~~~-~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gp-v~t--~tK~~~~p~gl~~l----~~~~~~~~iPvvAI 170 (221)
T PRK06512 99 ALAEAIEKH-APKMIVGFGNLRDRHGAMEIGELRPDYLFFGK-LGA--DNKPEAHPRNLSLA----EWWAEMIEIPCIVQ 170 (221)
T ss_pred CHHHHHHhc-CCCCEEEecCCCCHHHHHHhhhcCCCEEEECC-CCC--CCCCCCCCCChHHH----HHHHHhCCCCEEEE
Confidence 466677654 344566655 5677778888899999999983 311 12333344555532 33566677775442
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
|+ .+++++ .+++ ++||++|=+-++
T Consensus 171 ----GG--I~~~n~----~~~~-~~GA~giAvisa 194 (221)
T PRK06512 171 ----AG--SDLASA----VEVA-ETGAEFVALERA 194 (221)
T ss_pred ----eC--CCHHHH----HHHH-HhCCCEEEEhHH
Confidence 22 356665 5555 689999988765
No 436
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=68.55 E-value=60 Score=30.33 Aligned_cols=108 Identities=15% Similarity=0.247 Sum_probs=69.5
Q ss_pred CCCcEEEE--ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCC-cEE-eeCCC---
Q 026125 90 NGEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP-LLV-GDLPF--- 162 (243)
Q Consensus 90 ~g~~Itml--TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~-fvV-aDmPf--- 162 (243)
..-|+++= -+.|+....-|=++||+-+.+--| ..++||=+..++.|++-+... .-| +-+..
T Consensus 73 ~~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~DgS------------~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg 140 (284)
T PRK09195 73 YHHPLALHLDHHEKFDDIAQKVRSGVRSVMIDGS------------HLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGG 140 (284)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEeCCC------------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccC
Confidence 34564443 457888888888889987766433 368999999999988754311 011 11111
Q ss_pred -----------CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC---------CchHHHHHHHHHc-CCceeec
Q 026125 163 -----------GTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---------PSRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 163 -----------gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~---------~~~~~~i~~L~~~-GIPV~GH 214 (243)
..| ++||+| .+|+++.|+|++=+.=|. ....+.++.|.+. +||.+=|
T Consensus 141 ~e~~~~~~~~~~~~-T~peea----~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLH 208 (284)
T PRK09195 141 QEDDLQVDEADALY-TDPAQA----REFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLH 208 (284)
T ss_pred cccCcccccccccC-CCHHHH----HHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEe
Confidence 126 689998 789989999987665442 2334455666655 7888777
No 437
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=68.43 E-value=45 Score=28.53 Aligned_cols=74 Identities=15% Similarity=0.035 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-hHHHHHHHHHcCCceeec
Q 026125 136 TLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-RITAARGIVEAGIAVMGH 214 (243)
Q Consensus 136 TldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-~~~~i~~L~~~GIPV~GH 214 (243)
-+.+++......++....-+++.+... +.+.-.+....+ ...++|++-+.+.... ....++.+.+.||||+.-
T Consensus 13 ~~~~~~~~~~~~a~~~g~~~~~~~~~~-----~~~~~~~~i~~l-~~~~vdgiIi~~~~~~~~~~~i~~~~~~~iPvV~~ 86 (273)
T cd06309 13 WRTAETKSIKDAAEKRGFDLKFADAQQ-----KQENQISAIRSF-IAQGVDVIILAPVVETGWDPVLKEAKAAGIPVILV 86 (273)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEeCCCC-----CHHHHHHHHHHH-HHcCCCEEEEcCCccccchHHHHHHHHCCCCEEEE
Confidence 456778888888887777777765322 333333333344 4568999999765432 134568899999999874
Q ss_pred c
Q 026125 215 V 215 (243)
Q Consensus 215 i 215 (243)
-
T Consensus 87 ~ 87 (273)
T cd06309 87 D 87 (273)
T ss_pred e
Confidence 3
No 438
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=68.37 E-value=43 Score=31.14 Aligned_cols=107 Identities=18% Similarity=0.268 Sum_probs=69.2
Q ss_pred CCcEEEE--ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCC-cEE-eeCCC----
Q 026125 91 GEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP-LLV-GDLPF---- 162 (243)
Q Consensus 91 g~~Itml--TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~-fvV-aDmPf---- 162 (243)
.-|+.+= -+.|+....-+=++||+-|.+--| ..++||=+..|+.|++-+... ..| +-+..
T Consensus 69 ~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD~S------------~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~ 136 (276)
T cd00947 69 SVPVALHLDHGSSFELIKRAIRAGFSSVMIDGS------------HLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGE 136 (276)
T ss_pred CCCEEEECCCCCCHHHHHHHHHhCCCEEEeCCC------------CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCc
Confidence 4565544 457777777778889988876433 358999999999987755321 111 11111
Q ss_pred --------CCCcCCHHHHHHHHHHHHHHhCCCEEEeCC----------CCCchHHHHHHHHHc-CCceeec
Q 026125 163 --------GTYESSTNQAVDTAVRILKEGGMDAIKLEG----------GSPSRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 163 --------gsY~~s~e~Av~nA~Rl~keaGAdaVKLEG----------g~~~~~~~i~~L~~~-GIPV~GH 214 (243)
..| ++|++| .+|+++.|+|++=+.= ......++++.|.++ +||.+=|
T Consensus 137 e~~~~~~~~~~-T~pe~a----~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlH 202 (276)
T cd00947 137 EDGVVGDEGLL-TDPEEA----EEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLH 202 (276)
T ss_pred cCCcccccccC-CCHHHH----HHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEe
Confidence 126 688888 7899899988775432 222334556666665 8888877
No 439
>PRK07360 FO synthase subunit 2; Reviewed
Probab=68.32 E-value=26 Score=33.31 Aligned_cols=93 Identities=20% Similarity=0.239 Sum_probs=54.4
Q ss_pred HHHHHHcCCCEE-EeCcchhhhhcc-CCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC----C--CCCcCCHHHHHHHH
Q 026125 105 AVHLDSAGIDIC-LVGDSAAMVVHG-HDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP----F--GTYESSTNQAVDTA 176 (243)
Q Consensus 105 A~iae~AGiDiI-LVGDSlgmv~lG-~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP----f--gsY~~s~e~Av~nA 176 (243)
|+.+.+.|+.-+ ++| | .|+. -.+|.+....+.|++..+..-+.+=-| + .+.+.+.++.
T Consensus 100 a~~a~~~G~~~i~l~~--------G~~p~~--~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e~---- 165 (371)
T PRK07360 100 AAEAVKRGATEVCIQG--------GLHPAA--DSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEEV---- 165 (371)
T ss_pred HHHHHhCCCCEEEEcc--------CCCCCC--CcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHHH----
Confidence 456778899855 565 2 2222 147888888888887544332222000 0 0011234444
Q ss_pred HHHHHHhCCCEEEeCCCCC------------------chHHHHHHHHHcCCcee
Q 026125 177 VRILKEGGMDAIKLEGGSP------------------SRITAARGIVEAGIAVM 212 (243)
Q Consensus 177 ~Rl~keaGAdaVKLEGg~~------------------~~~~~i~~L~~~GIPV~ 212 (243)
.+.++++|+|.+. |.+.+ ....+++.+-+.||+|+
T Consensus 166 l~~LkeAGld~~~-~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~ 218 (371)
T PRK07360 166 LKALKDAGLDSMP-GTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTT 218 (371)
T ss_pred HHHHHHcCCCcCC-CcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCce
Confidence 4667789999985 55421 23456788899999986
No 440
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=68.19 E-value=71 Score=28.80 Aligned_cols=135 Identities=9% Similarity=0.008 Sum_probs=70.7
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHH----HHHHHHcCCCEEEeCcch----hhhhccCCCCccCCHHHHHHHHHHHHcc
Q 026125 79 VTLTHLRQKHKNGEPITMVTAYDYPS----AVHLDSAGIDICLVGDSA----AMVVHGHDTTLPITLEEMLVHCRAVARG 150 (243)
Q Consensus 79 ~tv~~Lr~~kk~g~~ItmlTAYD~~s----A~iae~AGiDiILVGDSl----gmv~lG~~dT~~vTldeMi~h~~aV~Rg 150 (243)
......+++..+.+...+++.++-.. +.+++++++-+|...... ...++-...+......-+..++..- .+
T Consensus 54 ~a~~~~~~Li~~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~-~~ 132 (334)
T cd06356 54 RYQQYAQRLALQDKVDVVWGGISSASREAIRPIMDRTKQLYFYTTQYEGGVCDRNTFCTGATPAQQFSTLVPYMMEK-YG 132 (334)
T ss_pred HHHHHHHHHHHhCCCCEEEeCcchHHHHHHHHHHHhcCceEEeCCCccCCcccCCEEEeCCCcHHHHHHHHHHHHHc-cC
Confidence 45666778877777888888887754 356778888777532111 1112222222222233344433221 12
Q ss_pred cCCCcEEeeCCCCC----------------------CcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcC
Q 026125 151 AKRPLLVGDLPFGT----------------------YESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAG 208 (243)
Q Consensus 151 a~~~fvVaDmPfgs----------------------Y~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~G 208 (243)
.+..+|..|-+||. |..+. .-+...+.-++..++|+|.+-+.......+++.+.+.|
T Consensus 133 ~~vail~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~-~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G 211 (334)
T cd06356 133 KKVYTIAADYNFGQISAEWVRKIVEENGGEVVGEEFIPLDV-SDFGSTIQKIQAAKPDFVMSILVGANHLSFYRQWAAAG 211 (334)
T ss_pred CeEEEECCCchhhHHHHHHHHHHHHHcCCEEEeeeecCCCc-hhHHHHHHHHHhcCCCEEEEeccCCcHHHHHHHHHHcC
Confidence 22333335555542 21111 12233344455678899887543333456678888998
Q ss_pred C---ceeecc
Q 026125 209 I---AVMGHV 215 (243)
Q Consensus 209 I---PV~GHi 215 (243)
+ |++++.
T Consensus 212 ~~~~~~~~~~ 221 (334)
T cd06356 212 LGNIPMASST 221 (334)
T ss_pred CccCceeeee
Confidence 7 677654
No 441
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=68.14 E-value=37 Score=28.66 Aligned_cols=78 Identities=18% Similarity=0.075 Sum_probs=47.7
Q ss_pred cCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceee
Q 026125 134 PITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMG 213 (243)
Q Consensus 134 ~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~G 213 (243)
.--+.++++.++...+-.+..+++.+..+... ....+. .+.+...++|+|-+.+....... +..+.++||||+-
T Consensus 11 ~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~l~~~~vdgiii~~~~~~~~~-~~~~~~~~ipvv~ 84 (264)
T cd01574 11 LHGPSSTLAAIESAAREAGYAVTLSMLAEADE-EALRAA----VRRLLAQRVDGVIVNAPLDDADA-ALAAAPADVPVVF 84 (264)
T ss_pred cccHHHHHHHHHHHHHHCCCeEEEEeCCCCch-HHHHHH----HHHHHhcCCCEEEEeCCCCChHH-HHHHHhcCCCEEE
Confidence 34567788888888877766666665543111 122233 33344568999998876433333 3456789999987
Q ss_pred ccCCc
Q 026125 214 HVGLT 218 (243)
Q Consensus 214 HiGLt 218 (243)
++-.
T Consensus 85 -~~~~ 88 (264)
T cd01574 85 -VDGS 88 (264)
T ss_pred -Eecc
Confidence 4544
No 442
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=68.00 E-value=21 Score=34.18 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=55.9
Q ss_pred hhhCCCcEEEEecCCHH---------HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 87 KHKNGEPITMVTAYDYP---------SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 87 ~kk~g~~ItmlTAYD~~---------sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
.++.|- .+.+++-|.. .++.+.++|+|.|.+-|++|. .+-+++-...+.+++..+.+
T Consensus 125 a~~~G~-~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~----------~~P~~v~~lv~~l~~~~~~~--- 190 (378)
T PRK11858 125 AKDHGL-YVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTVGI----------LDPFTMYELVKELVEAVDIP--- 190 (378)
T ss_pred HHHCCC-eEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCC----------CCHHHHHHHHHHHHHhcCCe---
Confidence 344453 4566664433 346678899999988888864 34555555566666654322
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
+.| -.+.+.--|+.|+...+ ++||+.|..
T Consensus 191 --l~~-H~Hnd~GlA~AN~laAv-~aGa~~vd~ 219 (378)
T PRK11858 191 --IEV-HCHNDFGMATANALAGI-EAGAKQVHT 219 (378)
T ss_pred --EEE-EecCCcCHHHHHHHHHH-HcCCCEEEE
Confidence 333 23457778999999999 589998764
No 443
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=67.97 E-value=63 Score=30.67 Aligned_cols=108 Identities=18% Similarity=0.206 Sum_probs=70.0
Q ss_pred CcEEEE--ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCC-cEE-eeCCC-----
Q 026125 92 EPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP-LLV-GDLPF----- 162 (243)
Q Consensus 92 ~~Itml--TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~-fvV-aDmPf----- 162 (243)
-|+++= -+.|+...+.+=++||+-+.+-.| ..++||=+..++.|++-+... .-| +-+..
T Consensus 75 VPValHLDHg~~~e~i~~ai~~GftSVM~DgS------------~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~e 142 (307)
T PRK05835 75 IPVALHLDHGTTFESCEKAVKAGFTSVMIDAS------------HHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIE 142 (307)
T ss_pred CeEEEECCCCCCHHHHHHHHHcCCCEEEEeCC------------CCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcc
Confidence 465544 567888888899999998876433 468999999999988744311 111 11110
Q ss_pred ---------CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC-----------CCchHHHHHHHHHc-CCceeeccC
Q 026125 163 ---------GTYESSTNQAVDTAVRILKEGGMDAIKLEGG-----------SPSRITAARGIVEA-GIAVMGHVG 216 (243)
Q Consensus 163 ---------gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg-----------~~~~~~~i~~L~~~-GIPV~GHiG 216 (243)
.-| ++|++| .+|+++.|+|++=+.=| .....+.++.|.++ +||.+=|=|
T Consensus 143 d~~~~~~~~~~~-TdPeeA----~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGg 212 (307)
T PRK05835 143 DNISVDEKDAVL-VNPKEA----EQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGA 212 (307)
T ss_pred CCcccccccccC-CCHHHH----HHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEEEeCC
Confidence 116 688888 78999999998765432 12233445555554 799988843
No 444
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=67.88 E-value=35 Score=33.78 Aligned_cols=112 Identities=19% Similarity=0.155 Sum_probs=67.5
Q ss_pred HHHHHHHHHcCCCEEEeCcchhh-hhccCCCCccCCHHHHHHHHHHHHcccCCCcEE--eeCC-CCCCcCCHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAM-VVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV--GDLP-FGTYESSTNQAVDTAV 177 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgm-v~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV--aDmP-fgsY~~s~e~Av~nA~ 177 (243)
-.-|...+++|++.|=++..... +++.+-+.. . .+.++.+++..++..+. +--+ .-+|..-++++++.-+
T Consensus 29 l~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~--p----~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v 102 (448)
T PRK12331 29 LPILEKLDNAGYHSLEMWGGATFDACLRFLNED--P----WERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFV 102 (448)
T ss_pred HHHHHHHHHcCCCEEEecCCccchhhhccCCCC--H----HHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHH
Confidence 34577899999999955422211 222222221 1 23345555554544332 2111 2245444677777777
Q ss_pred HHHHHhCCCEEEeCCCCC---chHHHHHHHHHcCCceeeccCCcc
Q 026125 178 RILKEGGMDAIKLEGGSP---SRITAARGIVEAGIAVMGHVGLTP 219 (243)
Q Consensus 178 Rl~keaGAdaVKLEGg~~---~~~~~i~~L~~~GIPV~GHiGLtP 219 (243)
+...+.|+|.|.+-+... .....|+...+.|+-|.+.|..+-
T Consensus 103 ~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~ 147 (448)
T PRK12331 103 QKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTT 147 (448)
T ss_pred HHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeec
Confidence 776689999999987742 244567878899999888887765
No 445
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=67.71 E-value=46 Score=30.44 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=66.4
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
.-+.|+|-|+++.|.|= ...+|.||-..-++.+++.++ +..|++... . +.+++++.+... ++.|||
T Consensus 35 l~~~Gv~gi~v~GstGE-------~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~---~--~t~~ai~~a~~a-~~~Gad 101 (296)
T TIGR03249 35 LLGYGLEALFAAGGTGE-------FFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG---G--NTSDAIEIARLA-EKAGAD 101 (296)
T ss_pred HHhcCCCEEEECCCCcC-------cccCCHHHHHHHHHHHHHHhCCCCcEEEecC---c--cHHHHHHHHHHH-HHhCCC
Confidence 44689999988766543 246789997777776666543 344666652 2 478999888655 479999
Q ss_pred EEEeCCCCC------chHHHHHHHHH-cCCcee----eccCCcccccccc
Q 026125 187 AIKLEGGSP------SRITAARGIVE-AGIAVM----GHVGLTPQAISVL 225 (243)
Q Consensus 187 aVKLEGg~~------~~~~~i~~L~~-~GIPV~----GHiGLtPQ~~~~~ 225 (243)
++-+---.. ....-.+.+.+ .++||+ -+..|.|+....+
T Consensus 102 av~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~L 151 (296)
T TIGR03249 102 GYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERL 151 (296)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Confidence 998754421 12233455665 458988 3455555544443
No 446
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=67.66 E-value=99 Score=28.22 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=55.4
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
-+..|++.+++-...++.+++|..++..+++. +|++-+|... ++--+++ +++. .+..|.++ -
T Consensus 77 gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~-~d~lkI~s~~------------~~n~~LL---~~~a-~~gkPVil-k 138 (260)
T TIGR01361 77 GLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY-ADILQIGARN------------MQNFELL---KEVG-KQGKPVLL-K 138 (260)
T ss_pred HHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh-CCEEEECccc------------ccCHHHH---HHHh-cCCCcEEE-e
Confidence 45667776666667788999999999999999 9999999432 1222233 3443 34556433 3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCC-CEEEeCC
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGM-DAIKLEG 192 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGA-daVKLEG 192 (243)
-+. . .++++.. +|+..+.+.|. +.+-+|-
T Consensus 139 ~G~--~-~t~~e~~-~Ave~i~~~Gn~~i~l~~r 168 (260)
T TIGR01361 139 RGM--G-NTIEEWL-YAAEYILSSGNGNVILCER 168 (260)
T ss_pred CCC--C-CCHHHHH-HHHHHHHHcCCCcEEEEEC
Confidence 332 1 2445543 33444555666 4666674
No 447
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=67.64 E-value=51 Score=28.79 Aligned_cols=98 Identities=24% Similarity=0.232 Sum_probs=57.9
Q ss_pred HHHHHHcCCCEEEeCc-chhhhhccCCCCccCCHHHH----HHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGD-SAAMVVHGHDTTLPITLEEM----LVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 105 A~iae~AGiDiILVGD-Slgmv~lG~~dT~~vTldeM----i~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl 179 (243)
|.-..++|.|+|=+|- |- .|...+++.+|- +.-.+++++......|..|. | +++ +++. .
T Consensus 25 a~~~~~~GAdiIDIg~~st------~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT----~--~~~-v~~~---a 88 (210)
T PF00809_consen 25 AREQVEAGADIIDIGAEST------RPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDT----F--NPE-VAEA---A 88 (210)
T ss_dssp HHHHHHTT-SEEEEESSTS------STTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEE----S--SHH-HHHH---H
T ss_pred HHHHHHhcCCEEEeccccc------CCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEEC----C--CHH-HHHH---H
Confidence 7888899999996662 21 233345555543 44444554423366688995 4 233 3333 3
Q ss_pred HHHhCCCEEEeCCCCCchHHHHHHHHHcCCceee-ccCCcc
Q 026125 180 LKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMG-HVGLTP 219 (243)
Q Consensus 180 ~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~G-HiGLtP 219 (243)
++ .|++.|.=-.|.+..+.+++.+.+.|.||+. |..=.|
T Consensus 89 L~-~g~~~ind~~~~~~~~~~~~l~a~~~~~vV~m~~~~~~ 128 (210)
T PF00809_consen 89 LK-AGADIINDISGFEDDPEMLPLAAEYGAPVVLMHSDGNP 128 (210)
T ss_dssp HH-HTSSEEEETTTTSSSTTHHHHHHHHTSEEEEESESSET
T ss_pred HH-cCcceEEecccccccchhhhhhhcCCCEEEEEeccccc
Confidence 44 4899988766643234556777788988875 544333
No 448
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=67.14 E-value=47 Score=28.15 Aligned_cols=74 Identities=20% Similarity=0.159 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-chHHHHHHHHHcCCceeec
Q 026125 136 TLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-SRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 136 TldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-~~~~~i~~L~~~GIPV~GH 214 (243)
-+.+++.......+-.+..+++.|-.+ +++...+..-.++ ..++|+|-+..... .....++.+.+.||||+.-
T Consensus 13 ~~~~~~~gi~~~~~~~g~~~~~~~~~~-----~~~~~~~~l~~~~-~~~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~ 86 (273)
T cd06305 13 FDQAYLAGTKAEAEALGGDLRVYDAGG-----DDAKQADQIDQAI-AQKVDAIIIQHGRAEVLKPWVKRALDAGIPVVAF 86 (273)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCC-----CHHHHHHHHHHHH-HcCCCEEEEecCChhhhHHHHHHHHHcCCCEEEe
Confidence 345667766666666666666665322 4444333333344 46899999975432 2345578899999999865
Q ss_pred c
Q 026125 215 V 215 (243)
Q Consensus 215 i 215 (243)
-
T Consensus 87 ~ 87 (273)
T cd06305 87 D 87 (273)
T ss_pred c
Confidence 3
No 449
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=66.93 E-value=47 Score=28.37 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=46.5
Q ss_pred cCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-hHHHHHHHHHcCCcee
Q 026125 134 PITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-RITAARGIVEAGIAVM 212 (243)
Q Consensus 134 ~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-~~~~i~~L~~~GIPV~ 212 (243)
.--+.+++.......+....-+++.+. . .++++-.+..-+++ ..++|+|-+...... ....++.+.++||||+
T Consensus 11 ~~~~~~~~~~i~~~~~~~g~~v~~~~~----~-~~~~~~~~~i~~~~-~~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV 84 (282)
T cd06318 11 SPFFAALTEAAKAHAKALGYELISTDA----Q-GDLTKQIADVEDLL-TRGVNVLIINPVDPEGLVPAVAAAKAAGVPVV 84 (282)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEcC----C-CCHHHHHHHHHHHH-HcCCCEEEEecCCccchHHHHHHHHHCCCCEE
Confidence 344677777777777766666555542 1 23443333333344 578999999754321 2345788899999988
Q ss_pred ec
Q 026125 213 GH 214 (243)
Q Consensus 213 GH 214 (243)
-.
T Consensus 85 ~~ 86 (282)
T cd06318 85 VV 86 (282)
T ss_pred Ee
Confidence 54
No 450
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=66.92 E-value=31 Score=31.46 Aligned_cols=100 Identities=23% Similarity=0.301 Sum_probs=52.3
Q ss_pred HcCCCEEEeCcchhhh-----hccCCCCccCCHHHHHHHHHHHH----cc---cCCCcEEeeCC-CC----------CCc
Q 026125 110 SAGIDICLVGDSAAMV-----VHGHDTTLPITLEEMLVHCRAVA----RG---AKRPLLVGDLP-FG----------TYE 166 (243)
Q Consensus 110 ~AGiDiILVGDSlgmv-----~lG~~dT~~vTldeMi~h~~aV~----Rg---a~~~fvVaDmP-fg----------sY~ 166 (243)
+||.|+|.+- +.+.. -+|+++. .++++...+-.++ .. .++.+|.++++ +| .|.
T Consensus 52 ~AGAdiI~Tn-Ty~a~~~~l~~~g~~~~---~~~~l~~~av~lA~~a~~~~~~~~~~~VaGsiGP~ga~l~g~~y~~~~~ 127 (305)
T PF02574_consen 52 EAGADIITTN-TYQASRERLKEYGLSDE---EAEELNRAAVELAREAADEYGSGRKVLVAGSIGPYGAYLSGSEYPGDYG 127 (305)
T ss_dssp HHT-SEEEEC--TT-SHHHHGGGT-GGG---CHHHHHHHHHHHHHHHHTT---TT-SEEEEEEE--S--------CTTCT
T ss_pred HCCCCeEEec-CCcCchhhhhhcCCcHH---HHHHHHHHHHHHHHHHHhhccCCCccEEEEEcccccccchhhhcccccc
Confidence 5788888753 33332 2345443 3556554333333 33 12367888886 43 454
Q ss_pred CCHHHHHHHH---HHHHHHhCCCEEEeC--CCCCchHHHHHHHHH-cCCceee
Q 026125 167 SSTNQAVDTA---VRILKEGGMDAIKLE--GGSPSRITAARGIVE-AGIAVMG 213 (243)
Q Consensus 167 ~s~e~Av~nA---~Rl~keaGAdaVKLE--Gg~~~~~~~i~~L~~-~GIPV~G 213 (243)
.+.+++.+.= .+.+.++|+|.+-+| ....+...+++++.+ .+.|+.-
T Consensus 128 ~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~p~~i 180 (305)
T PF02574_consen 128 LSFEELRDFHREQAEALADAGVDLLLFETMPSLAEAKAALEAIKEVTGLPVWI 180 (305)
T ss_dssp T-HHHHHHHHHHHHHHHHHTT-SEEEEEEEC-CSCHHHHHHHHHHHHHCCSSE
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHHhhhhhhcee
Confidence 4555443332 344557899999999 433445566777777 6677653
No 451
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=66.79 E-value=1.3e+02 Score=29.17 Aligned_cols=124 Identities=15% Similarity=0.169 Sum_probs=83.4
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 026125 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 79 ~tv~~-Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~ 152 (243)
++..+ |+..++++--+-..++||+.+++ +||+.+..+|+ +..+. .-. ..++.+...+++.++-++
T Consensus 4 v~~k~lL~~A~~~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~-~~~--------~g~~~~~~~~~~~a~~~~ 74 (347)
T PRK09196 4 ISLRQLLDHAAEHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGA-RKY--------AGEPFLRHLILAAVEEYP 74 (347)
T ss_pred CcHHHHHHHHHHcCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccH-hhh--------CCHHHHHHHHHHHHHhCC
Confidence 44555 45566788889999999999986 57888999887 44332 111 224555666666666554
Q ss_pred -CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC--------------chHHHHHHHHHcCCceeeccCC
Q 026125 153 -RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP--------------SRITAARGIVEAGIAVMGHVGL 217 (243)
Q Consensus 153 -~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~--------------~~~~~i~~L~~~GIPV~GHiGL 217 (243)
-| |..-+..+. +.|.. .+.+ ++|.+.|.+.|+.. .+..+++..-..||+|=|=||-
T Consensus 75 ~VP-ValHLDHg~---~~e~i----~~ai-~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~ 145 (347)
T PRK09196 75 HIP-VVMHQDHGN---SPATC----QRAI-QLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGC 145 (347)
T ss_pred CCc-EEEECCCCC---CHHHH----HHHH-HcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEee
Confidence 45 677887742 45553 5566 48999999988743 1234566667789999888887
Q ss_pred ccc
Q 026125 218 TPQ 220 (243)
Q Consensus 218 tPQ 220 (243)
++.
T Consensus 146 vgg 148 (347)
T PRK09196 146 LGS 148 (347)
T ss_pred ccC
Confidence 763
No 452
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=66.64 E-value=61 Score=30.33 Aligned_cols=106 Identities=17% Similarity=0.255 Sum_probs=69.0
Q ss_pred cEEEE--ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCC-cEE-eeCCC------
Q 026125 93 PITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP-LLV-GDLPF------ 162 (243)
Q Consensus 93 ~Itml--TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~-fvV-aDmPf------ 162 (243)
|+++= -+.|+...+.+=++||+-+.+-.| ..++||=+..++.|++-+... .-| +-+..
T Consensus 79 PV~lHLDHg~~~e~i~~ai~~GftSVM~DgS------------~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed 146 (286)
T PRK08610 79 PVAIHLDHGSSFEKCKEAIDAGFTSVMIDAS------------HSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQED 146 (286)
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCEEEEeCC------------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccC
Confidence 65544 457888888888999998876433 368999999999988754311 111 11111
Q ss_pred ------CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC---------CCchHHHHHHHHHc-CCceeecc
Q 026125 163 ------GTYESSTNQAVDTAVRILKEGGMDAIKLEGG---------SPSRITAARGIVEA-GIAVMGHV 215 (243)
Q Consensus 163 ------gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg---------~~~~~~~i~~L~~~-GIPV~GHi 215 (243)
.-| ++||+| .+|+++.|+|++=+.=| .....+.++.|.++ +||.+=|=
T Consensus 147 ~~~~~~~~y-T~peea----~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHG 210 (286)
T PRK08610 147 DVVADGIIY-ADPKEC----QELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHG 210 (286)
T ss_pred CCCCccccc-CCHHHH----HHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeC
Confidence 016 689999 68889999998765433 22233445555554 88888773
No 453
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=66.58 E-value=55 Score=27.88 Aligned_cols=79 Identities=11% Similarity=0.106 Sum_probs=49.1
Q ss_pred CCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC----chHHHHHHHH
Q 026125 130 DTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP----SRITAARGIV 205 (243)
Q Consensus 130 ~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~----~~~~~i~~L~ 205 (243)
++...--+.+++..+....+..+.-+++.+-.+ +.+.-.+ +.+.+.+.++|++-+..... .....++.+.
T Consensus 7 ~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-----~~~~~~~-~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~ 80 (273)
T cd01541 7 TYISDYIFPSIIRGIESVLSEKGYSLLLASTNN-----DPERERK-CLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLE 80 (273)
T ss_pred CCccchhHHHHHHHHHHHHHHcCCEEEEEeCCC-----CHHHHHH-HHHHHHHcCCCEEEEeccccccccccHHHHHHHH
Confidence 344555667777777777777776666666432 2332222 23334457899999975431 1224467788
Q ss_pred HcCCceeec
Q 026125 206 EAGIAVMGH 214 (243)
Q Consensus 206 ~~GIPV~GH 214 (243)
+.||||+--
T Consensus 81 ~~~ipvV~~ 89 (273)
T cd01541 81 KLGIPYVFI 89 (273)
T ss_pred HCCCCEEEE
Confidence 999999864
No 454
>PRK08999 hypothetical protein; Provisional
Probab=66.58 E-value=76 Score=28.79 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=54.6
Q ss_pred CCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCH
Q 026125 90 NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST 169 (243)
Q Consensus 90 ~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~ 169 (243)
....++-++|++...+..|++.|+|-|.+|==... --.|+..+..++. .+.+++..+.|++.- |+ .|+
T Consensus 224 ~~~~~ig~S~h~~~~~~~a~~~~~dyi~~gpvf~t--~tk~~~~~~g~~~----~~~~~~~~~~Pv~Ai----GG--I~~ 291 (312)
T PRK08999 224 PAGRWVAASCHDAEELARAQRLGVDFAVLSPVQPT--ASHPGAAPLGWEG----FAALIAGVPLPVYAL----GG--LGP 291 (312)
T ss_pred CCCCEEEEecCCHHHHHHHHhcCCCEEEECCCcCC--CCCCCCCCCCHHH----HHHHHHhCCCCEEEE----CC--CCH
Confidence 34678889999999999999999999998842222 2244444555553 344566666674432 22 255
Q ss_pred HHHHHHHHHHHHHhCCCEEEe
Q 026125 170 NQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 170 e~Av~nA~Rl~keaGAdaVKL 190 (243)
+++ .++. +.||++|=.
T Consensus 292 ~~~----~~~~-~~g~~gva~ 307 (312)
T PRK08999 292 GDL----EEAR-EHGAQGIAG 307 (312)
T ss_pred HHH----HHHH-HhCCCEEEE
Confidence 554 4555 689998854
No 455
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=66.47 E-value=32 Score=32.29 Aligned_cols=112 Identities=29% Similarity=0.468 Sum_probs=66.6
Q ss_pred CCCHHHHH---HhhhCCCcEEEEec------CC-----H--HHHHHHHHcCCCEE-EeCcchhhhhccCCCCccCCHHHH
Q 026125 78 RVTLTHLR---QKHKNGEPITMVTA------YD-----Y--PSAVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEM 140 (243)
Q Consensus 78 ~~tv~~Lr---~~kk~g~~ItmlTA------YD-----~--~sA~iae~AGiDiI-LVGDSlgmv~lG~~dT~~vTldeM 140 (243)
.+|+.++. +..+.|.|=+++-+ |- + .-+++..++|.|++ |=| + +||
T Consensus 57 ~Vsl~~mi~ht~aV~Rga~~~~vv~DmPF~sy~~s~~~a~~nA~r~~ke~gA~aVKlEG-G----------------~~~ 119 (268)
T COG0413 57 PVTLEDMIYHTKAVRRGAPNAFVVADLPFGSYEVSPEQALKNAARLMKEAGADAVKLEG-G----------------EEM 119 (268)
T ss_pred eecHHHHHHHHHHHHhcCCCeeEEeCCCCcccCCCHHHHHHHHHHHHHHhCCCEEEEcC-C----------------HHH
Confidence 57777755 33455555444422 32 1 23577788999999 444 1 456
Q ss_pred HHHHHHHHc-ccCCCcEEeeCC--------CCCCc------CCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHH
Q 026125 141 LVHCRAVAR-GAKRPLLVGDLP--------FGTYE------SSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIV 205 (243)
Q Consensus 141 i~h~~aV~R-ga~~~fvVaDmP--------fgsY~------~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~ 205 (243)
....+.+++ |.| |++-+. ||+|. .+.++.++.|..+ +++||-++-||+-.+ .+.+.|+
T Consensus 120 ~~~i~~L~~~gIP---V~gHiGLtPQ~v~~~GGykvqGr~~~~a~~l~~dA~al-e~AGaf~ivlE~Vp~---~lA~~IT 192 (268)
T COG0413 120 AETIKRLTERGIP---VMGHIGLTPQSVNWLGGYKVQGRTEESAEKLLEDAKAL-EEAGAFALVLECVPA---ELAKEIT 192 (268)
T ss_pred HHHHHHHHHcCCc---eEEEecCChhhhhccCCeeeecCCHHHHHHHHHHHHHH-HhcCceEEEEeccHH---HHHHHHH
Confidence 666666554 443 454432 45563 1344556666554 479999999998864 3345555
Q ss_pred Hc-CCceee
Q 026125 206 EA-GIAVMG 213 (243)
Q Consensus 206 ~~-GIPV~G 213 (243)
+. -||++|
T Consensus 193 ~~lsiPtIG 201 (268)
T COG0413 193 EKLSIPTIG 201 (268)
T ss_pred hcCCCCEEe
Confidence 53 588876
No 456
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=66.37 E-value=76 Score=29.57 Aligned_cols=119 Identities=17% Similarity=0.275 Sum_probs=78.0
Q ss_pred HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
|++.++++--+-..++||..+++ +||+.+.++|+ +.-+. .-.+ .++.+...+++.++-++-| |..
T Consensus 9 l~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~~-~~~~--------~~~~~~~~~~~~a~~~~vP-Val 78 (287)
T PF01116_consen 9 LKKAKEGGYAVPAFNVYNLETARAVIEAAEELNSPVILQISPSE-VKYM--------GLEYLAAMVKAAAEEASVP-VAL 78 (287)
T ss_dssp HHHHHHHT-BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHHH-HHHH--------HHHHHHHHHHHHHHHSTSE-EEE
T ss_pred HHHHHHCCCeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchhh-hhhh--------hHHHHHHHHHHHHHHcCCC-EEe
Confidence 45567788899999999999986 57888999987 33222 1111 5666777888888888766 566
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCccc
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQ 220 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ 220 (243)
-+..+ .+.+.. .+.+ +.|.+.|.+.|+..- +..+++..-..||+|=|=||-+..
T Consensus 79 HLDH~---~~~e~i----~~ai-~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g 139 (287)
T PF01116_consen 79 HLDHG---KDFEDI----KRAI-DAGFTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHIGG 139 (287)
T ss_dssp EEEEE----SHHHH----HHHH-HHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSS
T ss_pred ecccC---CCHHHH----HHHH-HhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeec
Confidence 66662 234444 5556 469999999888532 234556666789999888887753
No 457
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=66.26 E-value=22 Score=35.86 Aligned_cols=71 Identities=13% Similarity=-0.034 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHcccC-CC--cEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHH
Q 026125 135 ITLEEMLVHCRAVARGAK-RP--LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVE 206 (243)
Q Consensus 135 vTldeMi~h~~aV~Rga~-~~--fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~ 206 (243)
.|.+|.+..+....+-++ .- .+..++|+.+. .+++..++.+.++. +.||+.|.|-|-.. ....+|+.|.+
T Consensus 202 ~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~R-td~efl~~~~~~a~-~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~ 279 (503)
T PLN03228 202 KTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGR-SDKEFLCKILGEAI-KAGATSVGIADTVGINMPHEFGELVTYVKA 279 (503)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEeccccccc-cCHHHHHHHHHHHH-hcCCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 456666655444333322 22 25678899666 67887888777776 69999999998732 34456777765
Q ss_pred c
Q 026125 207 A 207 (243)
Q Consensus 207 ~ 207 (243)
.
T Consensus 280 ~ 280 (503)
T PLN03228 280 N 280 (503)
T ss_pred H
Confidence 4
No 458
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=66.15 E-value=39 Score=30.73 Aligned_cols=98 Identities=26% Similarity=0.318 Sum_probs=54.6
Q ss_pred HHHHHHcCCCEEEeCc-chhhhhccCCCCccCCHHH----HHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGD-SAAMVVHGHDTTLPITLEE----MLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 105 A~iae~AGiDiILVGD-Slgmv~lG~~dT~~vTlde----Mi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl 179 (243)
|+...++|.|+|=||. |- .|+..+++-+| |..-.+.++.-.+.| |..| ||. .++++.|
T Consensus 29 a~~~~~~GA~iIDIG~~st------~p~~~~i~~~~E~~rl~~~v~~~~~~~~~p-lsiD----T~~---~~vi~~a--- 91 (257)
T TIGR01496 29 AERMLEEGADIIDVGGEST------RPGADRVSPEEELNRVVPVIKALRDQPDVP-ISVD----TYR---AEVARAA--- 91 (257)
T ss_pred HHHHHHCCCCEEEECCCCC------CCCCCCCCHHHHHHHHHHHHHHHHhcCCCe-EEEe----CCC---HHHHHHH---
Confidence 4445688999997762 22 23445666664 344444444333444 6788 442 3344433
Q ss_pred HHHhCCCEEEeCCCCCchHHHHHHHHHcCCceee-ccCCcccc
Q 026125 180 LKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMG-HVGLTPQA 221 (243)
Q Consensus 180 ~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~G-HiGLtPQ~ 221 (243)
++ .|++.|.==.+.. .+.+++.+.+.|.||+. |..=+|++
T Consensus 92 l~-~G~~iINsis~~~-~~~~~~l~~~~~~~vV~m~~~g~p~~ 132 (257)
T TIGR01496 92 LE-AGADIINDVSGGQ-DPAMLEVAAEYGVPLVLMHMRGTPRT 132 (257)
T ss_pred HH-cCCCEEEECCCCC-CchhHHHHHHcCCcEEEEeCCCCCcc
Confidence 43 4899887433322 23446667788999876 33224554
No 459
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=66.09 E-value=38 Score=30.31 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeec
Q 026125 137 LEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 137 ldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GH 214 (243)
+.+++.-....++-....+++.+... +.+.- ++.+.+.+.++||+-+-+.....+. ++.+.+.||||+--
T Consensus 16 f~~ii~gIe~~a~~~Gy~l~l~~t~~-----~~~~e--~~i~~l~~~~vDGiI~~s~~~~~~~-l~~~~~~~iPvV~~ 85 (279)
T PF00532_consen 16 FAEIIRGIEQEAREHGYQLLLCNTGD-----DEEKE--EYIELLLQRRVDGIILASSENDDEE-LRRLIKSGIPVVLI 85 (279)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETT-----THHHH--HHHHHHHHTTSSEEEEESSSCTCHH-HHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCCC-----chHHH--HHHHHHHhcCCCEEEEecccCChHH-HHHHHHcCCCEEEE
Confidence 67778777778777777777777533 22322 5566777889999999966543244 67888889999854
No 460
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=66.07 E-value=55 Score=27.48 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=44.7
Q ss_pred ccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCcee
Q 026125 133 LPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVM 212 (243)
Q Consensus 133 ~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~ 212 (243)
..-.+.+++.-.....+.....+++.+..+ +.+.-.+ ..+.+.+.++|+|-+-+.... ...++.+.++||||+
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-----~~~~~~~-~~~~l~~~~vdgiii~~~~~~-~~~~~~~~~~~ipvv 82 (268)
T cd01575 10 SNSVFADVLQGISDVLEAAGYQLLLGNTGY-----SPEREEE-LLRTLLSRRPAGLILTGLEHT-ERTRQLLRAAGIPVV 82 (268)
T ss_pred cchhHHHHHHHHHHHHHHcCCEEEEecCCC-----CchhHHH-HHHHHHHcCCCEEEEeCCCCC-HHHHHHHHhcCCCEE
Confidence 344566677666666666666666655432 2222112 233333568999998775432 344677889999998
Q ss_pred ec
Q 026125 213 GH 214 (243)
Q Consensus 213 GH 214 (243)
.-
T Consensus 83 ~~ 84 (268)
T cd01575 83 EI 84 (268)
T ss_pred EE
Confidence 65
No 461
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=66.04 E-value=70 Score=27.63 Aligned_cols=64 Identities=20% Similarity=0.234 Sum_probs=28.3
Q ss_pred cCCCCccCCHHHHHH-HHHHHHcccCCCcEEeeCCCCCC-cCCHHHHHHHHHHHHHHhCCCEE--EeCCCC
Q 026125 128 GHDTTLPITLEEMLV-HCRAVARGAKRPLLVGDLPFGTY-ESSTNQAVDTAVRILKEGGMDAI--KLEGGS 194 (243)
Q Consensus 128 G~~dT~~vTldeMi~-h~~aV~Rga~~~fvVaDmPfgsY-~~s~e~Av~nA~Rl~keaGAdaV--KLEGg~ 194 (243)
|+|... .+.+..+. .-.+++.|++---++.+ +|.+ ..+.+...+...++.++++---+ -+|-+.
T Consensus 60 ~fp~g~-~~~~~k~~eve~A~~~GAdevdvv~~--~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~ 127 (203)
T cd00959 60 GFPLGA-TTTEVKVAEAREAIADGADEIDMVIN--IGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGL 127 (203)
T ss_pred ecCCCC-CcHHHHHHHHHHHHHcCCCEEEEeec--HHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 344433 33344433 44567777754434444 3322 12334455555555544320112 356664
No 462
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=65.95 E-value=60 Score=28.77 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCcee
Q 026125 136 TLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVM 212 (243)
Q Consensus 136 TldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~ 212 (243)
-+.+++.......+.....+++.+... ++++-. ...+.+.+.++|++-+.+........++.|.+.||||+
T Consensus 74 ~~~~~~~~i~~~~~~~gy~~~i~~~~~-----~~~~~~-~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV 144 (327)
T TIGR02417 74 SYARIAKELEQQCREAGYQLLIACSDD-----NPDQEK-VVIENLLARQVDALIVASCMPPEDAYYQKLQNEGLPVV 144 (327)
T ss_pred cHHHHHHHHHHHHHHCCCEEEEEeCCC-----CHHHHH-HHHHHHHHcCCCEEEEeCCCCCChHHHHHHHhcCCCEE
Confidence 345666666666655555656655422 222222 22333445678888876543212344677888888886
No 463
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=65.86 E-value=15 Score=34.87 Aligned_cols=106 Identities=16% Similarity=0.144 Sum_probs=65.8
Q ss_pred hhhCCCcEEEEecCCHH---------HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 87 KHKNGEPITMVTAYDYP---------SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 87 ~kk~g~~ItmlTAYD~~---------sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
.++.|- .+..++-|.. .++.+.++|+|.|.+.|++|. .+-+++-...+.+++..+.+
T Consensus 122 ak~~g~-~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~----------~~P~~v~~lv~~l~~~~~v~--- 187 (365)
T TIGR02660 122 ARDRGL-FVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADTVGI----------LDPFSTYELVRALRQAVDLP--- 187 (365)
T ss_pred HHhCCC-EEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCCC----------CCHHHHHHHHHHHHHhcCCe---
Confidence 344554 3566665543 245677899999999998874 35555666666777655422
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe--CCCCC-----chHHHHHHH-HHcCCc
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL--EGGSP-----SRITAARGI-VEAGIA 210 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL--EGg~~-----~~~~~i~~L-~~~GIP 210 (243)
+.|- .+.+.--|+.|+...+ ++||+.|.. -|=.+ -.+.++-.| ...|+.
T Consensus 188 --l~~H-~HNd~GlA~ANalaA~-~aGa~~vd~tl~GiGeraGN~~lE~lv~~L~~~~g~~ 244 (365)
T TIGR02660 188 --LEMH-AHNDLGMATANTLAAV-RAGATHVNTTVNGLGERAGNAALEEVAMALKRLLGRD 244 (365)
T ss_pred --EEEE-ecCCCChHHHHHHHHH-HhCCCEEEEEeeccccccccCCHHHHHHHHHHhcCCC
Confidence 2332 3467778999999999 589998762 21111 134555666 445654
No 464
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=65.63 E-value=12 Score=37.37 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCc-EEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL-LVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~f-vVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
...|..+-++|+|+|.+. +.+|+.+. ++...+.++...+.++ |++ |+- .+.+++ ..++
T Consensus 244 ~~ra~~Lv~aGvd~i~vd-----~a~g~~~~-------~~~~i~~ir~~~~~~~~V~a----GnV-~t~e~a----~~li 302 (502)
T PRK07107 244 AERVPALVEAGADVLCID-----SSEGYSEW-------QKRTLDWIREKYGDSVKVGA----GNV-VDREGF----RYLA 302 (502)
T ss_pred HHHHHHHHHhCCCeEeec-----CcccccHH-------HHHHHHHHHHhCCCCceEEe----ccc-cCHHHH----HHHH
Confidence 467778888999999885 34565543 2445566766666432 333 234 467777 5566
Q ss_pred HHhCCCEEEe
Q 026125 181 KEGGMDAIKL 190 (243)
Q Consensus 181 keaGAdaVKL 190 (243)
++|||+||+
T Consensus 303 -~aGAd~I~v 311 (502)
T PRK07107 303 -EAGADFVKV 311 (502)
T ss_pred -HcCCCEEEE
Confidence 599999988
No 465
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=65.62 E-value=87 Score=28.93 Aligned_cols=83 Identities=20% Similarity=0.304 Sum_probs=53.0
Q ss_pred EEEEecCCHHHHHHHHHcCCCEE-EeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE------eeCCCCCCc
Q 026125 94 ITMVTAYDYPSAVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV------GDLPFGTYE 166 (243)
Q Consensus 94 ItmlTAYD~~sA~iae~AGiDiI-LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV------aDmPfgsY~ 166 (243)
+.-+++.|+.+|..|+++|.|=| |+.+ + ..| .+--+...+- .+++....|..+ +|+ .|.
T Consensus 3 ~lEvcv~s~~~a~~A~~~GAdRiELc~~-L---~~G---GlTPS~g~i~----~~~~~~~ipv~vMIRPR~gdF---~Ys 68 (248)
T PRK11572 3 LLEICCYSMECALTAQQAGADRIELCAA-P---KEG---GLTPSLGVLK----SVRERVTIPVHPIIRPRGGDF---CYS 68 (248)
T ss_pred eEEEEECCHHHHHHHHHcCCCEEEEccC-c---CCC---CcCCCHHHHH----HHHHhcCCCeEEEEecCCCCC---CCC
Confidence 45689999999999999999977 7763 1 111 1222344332 233444455333 243 343
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 167 SSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 167 ~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
...-+.+..-++.+++.|+|+|-+
T Consensus 69 ~~E~~~M~~di~~~~~~GadGvV~ 92 (248)
T PRK11572 69 DGEFAAMLEDIATVRELGFPGLVT 92 (248)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEE
Confidence 233457777888999999999987
No 466
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=65.37 E-value=87 Score=29.25 Aligned_cols=109 Identities=16% Similarity=0.227 Sum_probs=69.9
Q ss_pred hCCCcEEEE--ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCC-cEE----eeCC
Q 026125 89 KNGEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP-LLV----GDLP 161 (243)
Q Consensus 89 k~g~~Itml--TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~-fvV----aDmP 161 (243)
+.+-|+++= -+.|+-....+-++||+-+++-.| ..++||=+..++.|++-+... .-| +-++
T Consensus 70 ~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS------------~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vg 137 (282)
T TIGR01858 70 TYNMPLALHLDHHESLDDIRQKVHAGVRSAMIDGS------------HFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLG 137 (282)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHcCCCEEeecCC------------CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecC
Confidence 344565443 467888888888889887776433 468999999999988744311 001 1110
Q ss_pred ---C--------CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC---------CchHHHHHHHHHc-CCceeec
Q 026125 162 ---F--------GTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---------PSRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 162 ---f--------gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~---------~~~~~~i~~L~~~-GIPV~GH 214 (243)
- ..| ++|++| .+|+++.|+|++=+.=|. ....+.++.|.+. +||.+=|
T Consensus 138 g~e~~~~~~~~~~~~-T~peea----~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlH 206 (282)
T TIGR01858 138 GVEDDLSVDEEDALY-TDPQEA----KEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLH 206 (282)
T ss_pred CccCCCccccchhcc-CCHHHH----HHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEe
Confidence 0 126 688888 788999999988765442 2233445656554 7888777
No 467
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=65.34 E-value=26 Score=32.17 Aligned_cols=123 Identities=18% Similarity=0.219 Sum_probs=75.4
Q ss_pred CCCCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHH---------
Q 026125 75 PNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCR--------- 145 (243)
Q Consensus 75 ~~~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~--------- 145 (243)
|.+++|..+|++|- +|..--|.....+|+|+|.-|=..|.+..|..- =.|+....+
T Consensus 40 pl~~VT~EeL~~M~----------~~t~~aAl~Lada~vdvI~Y~CtsgS~i~G~~~-----d~ei~~~ie~~~~v~vvT 104 (238)
T COG3473 40 PLKNVTPEELLKME----------SYTERAALELADAGVDVIVYGCTSGSLIGGPGY-----DKEIAQRIEEAKGVPVVT 104 (238)
T ss_pred ccccCCHHHHHHHH----------HHHHHHHHhcCccccCEEEEeccceeeecCCch-----hHHHHHHHHhccCCceee
Confidence 45679999999983 466777888888999999766555555555211 011111111
Q ss_pred ---HHHccc---------------------------CCCcEEeeCCCCCC-------cCCHHHHHHHHHHHHHHhCCCEE
Q 026125 146 ---AVARGA---------------------------KRPLLVGDLPFGTY-------ESSTNQAVDTAVRILKEGGMDAI 188 (243)
Q Consensus 146 ---aV~Rga---------------------------~~~fvVaDmPfgsY-------~~s~e~Av~nA~Rl~keaGAdaV 188 (243)
||.+|. .+-|=|+|.--.+. ..+|...++-|.++. ..++||+
T Consensus 105 ts~Avv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~-~~~~Dai 183 (238)
T COG3473 105 TSTAVVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVF-TPDADAI 183 (238)
T ss_pred chHHHHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhc-CCCCCeE
Confidence 111111 11233333221111 136888999998888 5899999
Q ss_pred EeCCCCCchHHHHHHHH-HcCCceee
Q 026125 189 KLEGGSPSRITAARGIV-EAGIAVMG 213 (243)
Q Consensus 189 KLEGg~~~~~~~i~~L~-~~GIPV~G 213 (243)
.+..-.-+...+|..|- +-|.||+-
T Consensus 184 FiSCTnlRt~eii~~lE~~~G~PVvs 209 (238)
T COG3473 184 FISCTNLRTFEIIEKLERDTGVPVVS 209 (238)
T ss_pred EEEeeccccHHHHHHHHHHhCCceee
Confidence 99977655666677774 56999974
No 468
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=65.28 E-value=1.2e+02 Score=28.93 Aligned_cols=98 Identities=17% Similarity=0.118 Sum_probs=63.9
Q ss_pred CCCHHHHHHhh-hCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 78 RVTLTHLRQKH-KNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 78 ~~tv~~Lr~~k-k~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
..++.+|+.++ +-+-||.+=..-+...|+.+.++|+|.|.|+..-|-. -|..+-|++-+.+-.+++ + ++..|
T Consensus 211 ~~~w~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~----~d~~~~~~~~L~~i~~~~--~-~~~~i 283 (356)
T PF01070_consen 211 SLTWDDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQ----LDWGPPTIDALPEIRAAV--G-DDIPI 283 (356)
T ss_dssp T-SHHHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTS----STTS-BHHHHHHHHHHHH--T-TSSEE
T ss_pred CCCHHHHHHHhcccCCceEEEecccHHHHHHHHhcCCCEEEecCCCccc----CccccccccccHHHHhhh--c-CCeeE
Confidence 46777776643 3457888889999999999999999999887555543 455666777666544444 2 35557
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
++|= +. .+..++ .+.+ ..||++|-+-
T Consensus 284 ~~dg---Gi-r~g~Dv----~kal-aLGA~~v~ig 309 (356)
T PF01070_consen 284 IADG---GI-RRGLDV----AKAL-ALGADAVGIG 309 (356)
T ss_dssp EEES---S---SHHHH----HHHH-HTT-SEEEES
T ss_pred EEeC---CC-CCHHHH----HHHH-HcCCCeEEEc
Confidence 8885 44 366777 3555 4899999874
No 469
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=65.19 E-value=15 Score=34.87 Aligned_cols=89 Identities=13% Similarity=0.219 Sum_probs=57.8
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
++.+.++|+|.|.+.|++|. .+-+++-...+.+++..+. .+.|-. +.+.--|+.|+...+ ++|
T Consensus 147 ~~~~~~~g~~~i~l~DT~G~----------~~P~~v~~li~~l~~~~~~-----~l~~H~-Hnd~GlA~AN~laA~-~aG 209 (363)
T TIGR02090 147 FKRAEEAGADRINIADTVGV----------LTPQKMEELIKKLKENVKL-----PISVHC-HNDFGLATANSIAGV-KAG 209 (363)
T ss_pred HHHHHhCCCCEEEEeCCCCc----------cCHHHHHHHHHHHhcccCc-----eEEEEe-cCCCChHHHHHHHHH-HCC
Confidence 45577889999999988763 4556666666777766542 234433 467778999999999 589
Q ss_pred CCEEEeC--C-----CCCchHHHHHHHHH-cCCc
Q 026125 185 MDAIKLE--G-----GSPSRITAARGIVE-AGIA 210 (243)
Q Consensus 185 AdaVKLE--G-----g~~~~~~~i~~L~~-~GIP 210 (243)
|+.|-.. | |.--.+.++..|.. .|+.
T Consensus 210 a~~vd~s~~GlGeraGN~~lE~vv~~L~~~~g~~ 243 (363)
T TIGR02090 210 AEQVHVTVNGIGERAGNAALEEVVMALKYLYGVK 243 (363)
T ss_pred CCEEEEEeeccccccccccHHHHHHHHHHhhCCC
Confidence 9987642 1 11124455666665 5654
No 470
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=65.18 E-value=53 Score=28.44 Aligned_cols=73 Identities=11% Similarity=0.023 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHHcCCceeec
Q 026125 136 TLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 136 TldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~~GIPV~GH 214 (243)
-+.+++.......+....-+++.+-.. +++.-.+....++ .-++|+|-+.... ......++.+.++||||+--
T Consensus 13 f~~~~~~gi~~~~~~~G~~~~~~~~~~-----d~~~~~~~i~~~~-~~~vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~ 86 (272)
T cd06313 13 WCAQGKQAADEAGKLLGVDVTWYGGAL-----DAVKQVAAIENMA-SQGWDFIAVDPLGIGTLTEAVQKAIARGIPVIDM 86 (272)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecCCC-----CHHHHHHHHHHHH-HcCCCEEEEcCCChHHhHHHHHHHHHCCCcEEEe
Confidence 345566666666666666666665322 4444444444555 5789999996542 22345578899999999764
No 471
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=65.03 E-value=1.3e+02 Score=28.67 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=71.1
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe--C--cchhhhhc--------cCCCCccCCHHHHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV--G--DSAAMVVH--------GHDTTLPITLEEMLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV--G--DSlgmv~l--------G~~dT~~vTldeMi~h~ 144 (243)
+.+|..++.+..+. | ...|+.|.+||||.|=+ | .=+...+- .|-....=-+.-+++..
T Consensus 138 ~~mt~~eI~~ii~~---------f-~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii 207 (370)
T cd02929 138 REMDKDDIKRVRRW---------Y-VDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETL 207 (370)
T ss_pred ccCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHH
Confidence 56888888887542 1 24688899999999943 2 21111111 11111122233356777
Q ss_pred HHHHcccCCCcEE-ee------CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------------hHHHHHHH
Q 026125 145 RAVARGAKRPLLV-GD------LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------------RITAARGI 204 (243)
Q Consensus 145 ~aV~Rga~~~fvV-aD------mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------------~~~~i~~L 204 (243)
++|++..+..|.| .= +|-++. .+.+++++.+..+ ++. +|.+.+..|... ....++.+
T Consensus 208 ~aIr~~vg~~~~v~vRls~~~~~~~~g~-~~~~e~~~~~~~l-~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~i 284 (370)
T cd02929 208 EDTKDAVGDDCAVATRFSVDELIGPGGI-ESEGEGVEFVEML-DEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFV 284 (370)
T ss_pred HHHHHHcCCCceEEEEecHHHhcCCCCC-CCHHHHHHHHHHH-Hhh-CCEEEecCCCccccccccccCCccccHHHHHHH
Confidence 8898888665544 21 233222 3678888877554 444 788887766210 01222333
Q ss_pred HH-cCCceeeccCC
Q 026125 205 VE-AGIAVMGHVGL 217 (243)
Q Consensus 205 ~~-~GIPV~GHiGL 217 (243)
.+ -+|||++-=|+
T Consensus 285 k~~~~~pvi~~G~i 298 (370)
T cd02929 285 KQVTSKPVVGVGRF 298 (370)
T ss_pred HHHCCCCEEEeCCC
Confidence 33 37899886555
No 472
>TIGR01702 CO_DH_cata carbon-monoxide dehydrogenase, catalytic subunit. This model represents the carbon-monoxide dehydrogenase catalytic subunit. This protein is related to prismane (also called hybrid cluster protein), a complex whose activity is not yet fully described; the two share similar sets of ligands to unusual metal-containing clusters.
Probab=64.98 E-value=80 Score=32.91 Aligned_cols=152 Identities=20% Similarity=0.225 Sum_probs=92.5
Q ss_pred HHHHHHhhhCCCc--EEEEe--------cCCHHHHHHHHHc-CCCEEEeCcchhh---hhccCCCCccCCHHHHH-HHHH
Q 026125 81 LTHLRQKHKNGEP--ITMVT--------AYDYPSAVHLDSA-GIDICLVGDSAAM---VVHGHDTTLPITLEEML-VHCR 145 (243)
Q Consensus 81 v~~Lr~~kk~g~~--ItmlT--------AYD~~sA~iae~A-GiDiILVGDSlgm---v~lG~~dT~~vTldeMi-~h~~ 145 (243)
+.-|.+..++|+. ++.+. -||...-.++.+. -=|++.+.-.-+. .-+|+=+.. ..+++. .-.|
T Consensus 419 ~~pLidaIk~G~Irgv~~ivGC~n~k~~~~d~~~v~lakeLik~DilVLt~GC~~~~~~k~gl~~~e--a~~~~aG~gLk 496 (621)
T TIGR01702 419 NKPLVDAIASGKIKGVVLVVGCSNLKNGGQDSSTVTLTKELIKRNILVLATGCSNGALEKAGLMTPE--AAEELAGEGLK 496 (621)
T ss_pred hHHHHHHHHhCCCceEEEEEeCCCCCCCccccHHHHHHHHhccCCEEEEccchhhhhhhhcCCCChH--HHhhhcchhhh
Confidence 3446666667644 44333 3678788888887 2387754322222 233333321 111221 3457
Q ss_pred HHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe-------CCCCCchHHHHHHHHHcCCceeeccCCc
Q 026125 146 AVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL-------EGGSPSRITAARGIVEAGIAVMGHVGLT 218 (243)
Q Consensus 146 aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL-------EGg~~~~~~~i~~L~~~GIPV~GHiGLt 218 (243)
+|++....|.| +.||+. .+.-.++.-|..+.++.|+|.=.| |--++.+..+--.++..||+ =|+|.+
T Consensus 497 ~v~~~~GIPpV---L~~GsC-~D~~r~~~la~aLA~~lgvdi~dLP~~~sApeW~eeKAvai~~~~~~lGi~--~~lG~~ 570 (621)
T TIGR01702 497 GVCKALGIPPV---LHFGSC-VDNGRAVDLATALAEDLGVDIPQLPLVASAPEWMEEKALADGTFAVSLGLP--THVSPV 570 (621)
T ss_pred hhhhcCCCCCc---cccccc-ccHHHHHHHHHHHHHHhCcCcccCCccccchhHHHHHHHHHHHHHHHcCCc--EeECCC
Confidence 78887777753 447778 678889999999998888775443 22222233334567889999 799999
Q ss_pred cccc--------------ccccCccccccCHHhhcc
Q 026125 219 PQAI--------------SVLGGFRPQGKNVTSAVK 240 (243)
Q Consensus 219 PQ~~--------------~~~GGykvqGkt~~~A~~ 240 (243)
|+-. ..+||+-..-.+...|.+
T Consensus 571 pp~~gS~~v~~~L~~~~~~~~G~~~~ve~Dp~~aa~ 606 (621)
T TIGR01702 571 PPVTGSELVTKLLTEDAEDLTGGKFIVEEDPQKAAD 606 (621)
T ss_pred CccccCHHHHHHHHHhHHHhcCcEEEEcCCHHHHHH
Confidence 9875 457787777777544443
No 473
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=64.57 E-value=16 Score=33.13 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=32.3
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
.+..+.++|.|.|+||.|. .+|.|.|..-.++|++.. .|.++
T Consensus 19 ~~~~~~~~gtdai~vGGS~-----------~vt~~~~~~~v~~ik~~~-lPvil 60 (223)
T TIGR01768 19 IAKAAAESGTDAILIGGSQ-----------GVTYEKTDTLIEALRRYG-LPIIL 60 (223)
T ss_pred HHHHHHhcCCCEEEEcCCC-----------cccHHHHHHHHHHHhccC-CCEEE
Confidence 4556778899999999766 467888888888898755 77554
No 474
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=64.51 E-value=59 Score=28.03 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=49.4
Q ss_pred CHHH-HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHH
Q 026125 101 DYPS-AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 101 D~~s-A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl 179 (243)
|+.. |+..++.|+|.+.+=|-= ...-|.+ .. ++..+.+++.++.|+++.+ +. .+.+++ .++
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld-~~~~g~~----~~----~~~i~~i~~~~~~pv~~~G----GI-~~~ed~----~~~ 92 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLD-GAKAGKP----VN----LELIEAIVKAVDIPVQVGG----GI-RSLETV----EAL 92 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCC-ccccCCc----cc----HHHHHHHHHHCCCCEEEcC----Cc-CCHHHH----HHH
Confidence 4443 777888999988765531 1112222 12 3444566676777755533 44 467776 455
Q ss_pred HHHhCCCEEEeCCCCCchHHHHHHHHHc
Q 026125 180 LKEGGMDAIKLEGGSPSRITAARGIVEA 207 (243)
Q Consensus 180 ~keaGAdaVKLEGg~~~~~~~i~~L~~~ 207 (243)
+ +.||+.|-+--.....+..++.+.+.
T Consensus 93 ~-~~Ga~~vilg~~~l~~~~~l~ei~~~ 119 (233)
T PRK00748 93 L-DAGVSRVIIGTAAVKNPELVKEACKK 119 (233)
T ss_pred H-HcCCCEEEECchHHhCHHHHHHHHHH
Confidence 5 57999987633322223345556554
No 475
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=64.28 E-value=60 Score=30.91 Aligned_cols=82 Identities=21% Similarity=0.341 Sum_probs=51.5
Q ss_pred HHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC
Q 026125 83 HLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF 162 (243)
Q Consensus 83 ~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf 162 (243)
.|.+..++-....+-|+||..++..+++.|+|++=||.. .++--+++.+ +++ +..| |+...+.
T Consensus 80 ~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~------------~~~n~pLL~~---~A~-~gkP-vilStGm 142 (329)
T TIGR03569 80 ELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSG------------EITNAPLLKK---IAR-FGKP-VILSTGM 142 (329)
T ss_pred HHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcc------------cccCHHHHHH---HHh-cCCc-EEEECCC
Confidence 344444555677899999999999999999999988832 2333344543 332 4566 4545544
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 163 GTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 163 gsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
. +.++ ++.|++.+++.|..
T Consensus 143 a----tl~E-i~~Av~~i~~~G~~ 161 (329)
T TIGR03569 143 A----TLEE-IEAAVGVLRDAGTP 161 (329)
T ss_pred C----CHHH-HHHHHHHHHHcCCC
Confidence 2 2333 34445666667764
No 476
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=64.22 E-value=17 Score=32.90 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=7.1
Q ss_pred HHHHHHcCCceeecc
Q 026125 201 ARGIVEAGIAVMGHV 215 (243)
Q Consensus 201 i~~L~~~GIPV~GHi 215 (243)
++...+.|+||..|.
T Consensus 166 ~~~A~~~g~~v~~H~ 180 (342)
T cd01299 166 VDEAHKAGLYVAAHA 180 (342)
T ss_pred HHHHHHcCCEEEEEe
Confidence 334444455555554
No 477
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=64.12 E-value=60 Score=32.96 Aligned_cols=89 Identities=12% Similarity=0.135 Sum_probs=55.9
Q ss_pred HHHHHHHcCCCEEEeCcc-hhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDS-AAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDS-lgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
.|+-+++.|+.-||+-|- -=.+..||+ +..++.|++.++.|+ |+-- +. .++++. .+++++
T Consensus 443 ~~~~~~~~Gageil~t~id~DGt~~G~d----------~~l~~~v~~~~~ipv-iasG---G~-g~~~d~----~~~~~~ 503 (538)
T PLN02617 443 LAKAVEELGAGEILLNCIDCDGQGKGFD----------IELVKLVSDAVTIPV-IASS---GA-GTPEHF----SDVFSK 503 (538)
T ss_pred HHHHHHhcCCCEEEEeeccccccccCcC----------HHHHHHHHhhCCCCE-EEEC---CC-CCHHHH----HHHHhc
Confidence 478889999987765531 111223332 344577888888884 5543 44 366776 456666
Q ss_pred hCCCEEEe----CCCCCchHHHHHHHHHcCCce
Q 026125 183 GGMDAIKL----EGGSPSRITAARGIVEAGIAV 211 (243)
Q Consensus 183 aGAdaVKL----EGg~~~~~~~i~~L~~~GIPV 211 (243)
+||+++-. --+......+-+.|.++||||
T Consensus 504 ~~~~a~~aa~~fh~~~~~~~~~k~~l~~~gi~v 536 (538)
T PLN02617 504 TNASAALAAGIFHRKEVPISSVKEHLLEEGIET 536 (538)
T ss_pred CCccEEEEEeeeccCCCCHHHHHHHHHHCCCcc
Confidence 78777643 122233567778999999998
No 478
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=63.99 E-value=93 Score=27.84 Aligned_cols=151 Identities=9% Similarity=-0.056 Sum_probs=0.0
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHH----HHHHHHcCCCEEEeCcchhhhhc--cCCC------CccCCHHHHHHHHHHHH
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPS----AVHLDSAGIDICLVGDSAAMVVH--GHDT------TLPITLEEMLVHCRAVA 148 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~s----A~iae~AGiDiILVGDSlgmv~l--G~~d------T~~vTldeMi~h~~aV~ 148 (243)
+...+++.++.+...++++++... +.++++.|+-+|..+.+.....- +++. +.....+-+..+.+. .
T Consensus 54 ~~~~~~lv~~~~v~~viG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~-~ 132 (333)
T cd06359 54 KQAAERLIKRDKVDFVTGVVFSNVLLAVVPPVLESGTFYISTNAGPSQLAGKQCSPYFFSTSWQNDQVHEAMGKYAQD-K 132 (333)
T ss_pred HHHHHHHHhhcCCcEEEccCCcHHHHHHHHHHHHcCCeEEecCCCccccccccCCCcEEEeeCChHhhHHHHHHHHHH-h
Q ss_pred cccCCCcEEeeCCCC------------------CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCC-
Q 026125 149 RGAKRPLLVGDLPFG------------------TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGI- 209 (243)
Q Consensus 149 Rga~~~fvVaDmPfg------------------sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GI- 209 (243)
...+-.++..|-+|| .|......-+...+.-+++.++|+|.+-........+++.+.+.|+
T Consensus 133 g~~~vail~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~d~~~~i~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~~ 212 (333)
T cd06359 133 GYKRVFLIAPNYQAGKDALAGFKRTFKGEVVGEVYTKLGQLDFSAELAQIRAAKPDAVFVFLPGGMGVNFVKQYRQAGLK 212 (333)
T ss_pred CCCeEEEEecCchhhHHHHHHHHHHhCceeeeeecCCCCCcchHHHHHHHHhCCCCEEEEEccCccHHHHHHHHHHcCcc
Q ss_pred ---ceeeccCCcccccccccCccccc
Q 026125 210 ---AVMGHVGLTPQAISVLGGFRPQG 232 (243)
Q Consensus 210 ---PV~GHiGLtPQ~~~~~GGykvqG 232 (243)
|++|+-+..+.......|....|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~g~~~~g 238 (333)
T cd06359 213 KDIPLYSPGFSDEEDTLPAVGDAALG 238 (333)
T ss_pred cCCeeeccCcccCHHHHHhcchhhcC
No 479
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=63.86 E-value=87 Score=26.23 Aligned_cols=97 Identities=15% Similarity=0.212 Sum_probs=57.2
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHcccC-CCcE
Q 026125 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAK-RPLL 156 (243)
Q Consensus 79 ~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga~-~~fv 156 (243)
......++.+ ....+..+++++...+..+.+.|+|.+.+|=-... --.++. .+..++.+- .+++..+ .|++
T Consensus 84 ~~~~~~r~~~-~~~~~ig~s~h~~~e~~~a~~~g~dyi~~~~v~~t--~~k~~~~~~~g~~~l~----~~~~~~~~~pv~ 156 (196)
T TIGR00693 84 LPASEARALL-GPDKIIGVSTHNLEELAEAEAEGADYIGFGPIFPT--PTKKDPAPPAGVELLR----EIAATSIDIPIV 156 (196)
T ss_pred CCHHHHHHhc-CCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCC--CCCCCCCCCCCHHHHH----HHHHhcCCCCEE
Confidence 4456666654 34578899999999999899999999988622111 001111 223444432 3333333 5544
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
.. |+- ++++ +.+++ +.|+++|-+-+.
T Consensus 157 a~----GGI--~~~~----~~~~~-~~G~~gva~~~~ 182 (196)
T TIGR00693 157 AI----GGI--TLEN----AAEVL-AAGADGVAVVSA 182 (196)
T ss_pred EE----CCc--CHHH----HHHHH-HcCCCEEEEhHH
Confidence 33 333 4444 35666 589999987655
No 480
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=63.64 E-value=1.2e+02 Score=27.60 Aligned_cols=105 Identities=16% Similarity=0.123 Sum_probs=56.2
Q ss_pred HHHHHHHcCCCEEEeCcchhh----hhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe---eCCCCCCcCCHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAM----VVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG---DLPFGTYESSTNQAVDTA 176 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgm----v~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa---DmPfgsY~~s~e~Av~nA 176 (243)
....+.++|+|.|-+..+.+- ..+|.. ..=.++.+...++..++. ... +.+ ++ |.++..+++..++.+
T Consensus 83 ~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~--~~~~~~~~~~~i~~ak~~-G~~-v~~~~~~~-~d~~~~~~~~~~~~~ 157 (273)
T cd07941 83 NLQALLEAGTPVVTIFGKSWDLHVTEALGTT--LEENLAMIRDSVAYLKSH-GRE-VIFDAEHF-FDGYKANPEYALATL 157 (273)
T ss_pred HHHHHHhCCCCEEEEEEcCCHHHHHHHcCCC--HHHHHHHHHHHHHHHHHc-CCe-EEEeEEec-cccCCCCHHHHHHHH
Confidence 344566889998855433321 223322 122344444445544432 222 333 44 234445777777777
Q ss_pred HHHHHHhCCCEEEeCCCC-----CchHHHHHHHHHc-C-Cceeec
Q 026125 177 VRILKEGGMDAIKLEGGS-----PSRITAARGIVEA-G-IAVMGH 214 (243)
Q Consensus 177 ~Rl~keaGAdaVKLEGg~-----~~~~~~i~~L~~~-G-IPV~GH 214 (243)
.++. +.|++.|.|-|.. +....++++|.++ + ||+--|
T Consensus 158 ~~~~-~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H 201 (273)
T cd07941 158 KAAA-EAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIH 201 (273)
T ss_pred HHHH-hCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEE
Confidence 7666 6899999998763 2344555666543 3 444333
No 481
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=63.64 E-value=1e+02 Score=28.46 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.+.++|++.+=+= .|..+...-.+++.+...++|++.. +...+..|. .++| |.+++++.+.++- +
T Consensus 146 ~a~~~~~~Gf~~~Kik-------~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDa-N~~~--~~~~a~~~~~~l~-~ 214 (357)
T cd03316 146 EAKRAVAEGFTAVKLK-------VGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDA-NGRW--DLAEAIRLARALE-E 214 (357)
T ss_pred HHHHHHHcCCCEEEEc-------CCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEEC-CCCC--CHHHHHHHHHHhC-c
Q ss_pred hCCCEEEeCCCCCchHHHHHHHHHc-CCceee
Q 026125 183 GGMDAIKLEGGSPSRITAARGIVEA-GIAVMG 213 (243)
Q Consensus 183 aGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~G 213 (243)
.+.+-+- |--......-.+.|.+. +|||++
T Consensus 215 ~~i~~iE-qP~~~~~~~~~~~l~~~~~ipi~~ 245 (357)
T cd03316 215 YDLFWFE-EPVPPDDLEGLARLRQATSVPIAA 245 (357)
T ss_pred cCCCeEc-CCCCccCHHHHHHHHHhCCCCEEe
No 482
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=63.62 E-value=53 Score=29.17 Aligned_cols=84 Identities=12% Similarity=0.074 Sum_probs=52.5
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeC
Q 026125 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDL 160 (243)
Q Consensus 82 ~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDm 160 (243)
.++.+.-++.+...++++++...+..+.++|+|+|-+ ||.. .+.. ...++++.-.+ .|| +
T Consensus 99 ~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~vkl----------FPa~-~~G~----~~ik~l~~~~p~ip~----~ 159 (213)
T PRK06552 99 RETAKICNLYQIPYLPGCMTVTEIVTALEAGSEIVKL----------FPGS-TLGP----SFIKAIKGPLPQVNV----M 159 (213)
T ss_pred HHHHHHHHHcCCCEECCcCCHHHHHHHHHcCCCEEEE----------CCcc-cCCH----HHHHHHhhhCCCCEE----E
Confidence 3344433455566889999999999999999999965 2211 2332 23455655444 333 2
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
|-|+- |. +|+..++ ++|+++|=+-
T Consensus 160 atGGI--~~----~N~~~~l-~aGa~~vavg 183 (213)
T PRK06552 160 VTGGV--NL----DNVKDWF-AAGADAVGIG 183 (213)
T ss_pred EECCC--CH----HHHHHHH-HCCCcEEEEc
Confidence 45554 44 4557788 4899998764
No 483
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=63.58 E-value=29 Score=30.46 Aligned_cols=90 Identities=19% Similarity=0.210 Sum_probs=52.6
Q ss_pred HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHH-----HHHHHHHH
Q 026125 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQA-----VDTAVRIL 180 (243)
Q Consensus 107 iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~A-----v~nA~Rl~ 180 (243)
.+-+.|+|.|++-=.. +.+++....+. ...-++.++|+|++. .+.- +..+.+.+
T Consensus 27 ~a~~~~~~av~v~p~~------------------~~~~~~~~~~~~~~~~~vi~fp~g~~~--~~~k~~~~~~~~ve~A~ 86 (236)
T PF01791_consen 27 EAIEYGFDAVCVTPGY------------------VKPAAELLAGSGVKVGLVIGFPFGTST--TEPKGYDQIVAEVEEAI 86 (236)
T ss_dssp HHHHHTSSEEEEEGGG------------------HHHHHHHSTTSTSEEEEEESTTTSSST--HHHHTCEEEHHHHHHHH
T ss_pred HHHHhCCCEEEECHHH------------------HHHHHHHhhccccccceEEEeCCCCCc--cccccccchHHHHHHHH
Confidence 3556699988765222 34444444442 234567999998873 4444 66777777
Q ss_pred HHhCCCEEEeC-------CCC-C----chHHHHHHHHHcCCceeeccCCc
Q 026125 181 KEGGMDAIKLE-------GGS-P----SRITAARGIVEAGIAVMGHVGLT 218 (243)
Q Consensus 181 keaGAdaVKLE-------Gg~-~----~~~~~i~~L~~~GIPV~GHiGLt 218 (243)
+.|||+|++= .+. . ....+++..-+.|+||+-. ++.
T Consensus 87 -~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE-~~l 134 (236)
T PF01791_consen 87 -RLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILE-PYL 134 (236)
T ss_dssp -HTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEE-ECE
T ss_pred -HcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEE-Eec
Confidence 5899999863 221 1 1222333333559999999 554
No 484
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=63.56 E-value=58 Score=28.79 Aligned_cols=105 Identities=20% Similarity=0.320 Sum_probs=0.0
Q ss_pred EEEeCc-chhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC----------CCCcCCHHHHHHHHHHHHHHh
Q 026125 115 ICLVGD-SAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF----------GTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 115 iILVGD-Slgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf----------gsY~~s~e~Av~nA~Rl~kea 183 (243)
+.++|| .++-.+.-..... ..+.+...++.+-+.++..+.--..|+ -.|..+++.+ +.++.+
T Consensus 2 i~~~GDi~~~~~~~~~~~~~--~~~~~~~~v~~~l~~aD~~~~NlE~~v~~~~~~~~~~~~f~~~~~~~-----~~L~~~ 74 (250)
T PF09587_consen 2 IAFVGDIMLGRGVYQRAEKG--GFDYIFEDVKPLLQSADLVVANLETPVTDSGQPASGYPHFNAPPEIL-----DALKDA 74 (250)
T ss_pred EEEEeccccCcchhhhcccC--ChHHHHHHHHHHHhhCCEEEEEeeecCcCCCCcCCCcceecCCHHHH-----HHHHHc
Q ss_pred CCCEEEe------CCCCCchHHHHHHHHHcCCceeeccCCcccccccccCccccccCHHhhccccC
Q 026125 184 GMDAIKL------EGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVFI 243 (243)
Q Consensus 184 GAdaVKL------EGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvqGkt~~~A~~ll~ 243 (243)
|.|+|-| .-|.+-...+++.|.++||+..| -|++.++|.+..+
T Consensus 75 G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~~~G-----------------ag~~~~~a~~p~i 123 (250)
T PF09587_consen 75 GFDVVSLANNHIFDYGEEGLLDTLEALDKAGIPYVG-----------------AGRNLEEARRPAI 123 (250)
T ss_pred CCCEEEecCCCCccccHHHHHHHHHHHHHCCCcEeE-----------------CcCChHHhcCeEE
No 485
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=63.39 E-value=24 Score=33.25 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCCEEEe--CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLV--GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 103 ~sA~iae~AGiDiILV--GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
..+++++++|+|+|-| |..-.. . -.-.+..++.|++.++.|++++ |.+ +++++ -+++
T Consensus 245 ~~~~~l~~~g~d~i~vs~g~~~~~-------~----~~~~~~~~~~ik~~~~ipvi~~----G~i--~~~~a----~~~l 303 (338)
T cd02933 245 YLAKELNKRGLAYLHLVEPRVAGN-------P----EDQPPDFLDFLRKAFKGPLIAA----GGY--DAESA----EAAL 303 (338)
T ss_pred HHHHHHHHcCCcEEEEecCCCCCc-------c----cccchHHHHHHHHHcCCCEEEE----CCC--CHHHH----HHHH
Confidence 5678889999999965 321111 1 1124566778888888885553 345 25555 6788
Q ss_pred HHhCCCEEEeCCC
Q 026125 181 KEGGMDAIKLEGG 193 (243)
Q Consensus 181 keaGAdaVKLEGg 193 (243)
++++||.|-+--+
T Consensus 304 ~~g~~D~V~~gR~ 316 (338)
T cd02933 304 ADGKADLVAFGRP 316 (338)
T ss_pred HcCCCCEEEeCHh
Confidence 8888999988544
No 486
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=63.35 E-value=78 Score=29.83 Aligned_cols=115 Identities=23% Similarity=0.295 Sum_probs=67.2
Q ss_pred HHHHHHHHHcCCCEE-E-eCcchhhh-hccCCCCccCCHHHHHHHHHHHHcccC-CCcEE-eeCCCCCCcCCHH-HHHHH
Q 026125 102 YPSAVHLDSAGIDIC-L-VGDSAAMV-VHGHDTTLPITLEEMLVHCRAVARGAK-RPLLV-GDLPFGTYESSTN-QAVDT 175 (243)
Q Consensus 102 ~~sA~iae~AGiDiI-L-VGDSlgmv-~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvV-aDmPfgsY~~s~e-~Av~n 175 (243)
+..|+++++.|+|.| | +|=..--+ --|.-+.+.-..|-+.+.+++++++++ .|+-| .=+.+ . +.+ .+...
T Consensus 82 ~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~---d-~~~~~~~~i 157 (323)
T COG0042 82 AEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGW---D-DDDILALEI 157 (323)
T ss_pred HHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEeccc---C-cccccHHHH
Confidence 356788899999988 4 55443332 233334555566677788899999995 67444 44433 1 122 24444
Q ss_pred HHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHH-cC-CceeeccC-Ccccc
Q 026125 176 AVRILKEGGMDAIKLEGGSPS-------RITAARGIVE-AG-IAVMGHVG-LTPQA 221 (243)
Q Consensus 176 A~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~-~G-IPV~GHiG-LtPQ~ 221 (243)
+ +.+.++|++++-+-|-... .-+.|+.+.+ .. |||+|-=+ .+|+.
T Consensus 158 a-~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~ 212 (323)
T COG0042 158 A-RILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLED 212 (323)
T ss_pred H-HHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHH
Confidence 4 5566899999998665210 1122333333 23 99998744 34443
No 487
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=63.08 E-value=57 Score=28.46 Aligned_cols=78 Identities=19% Similarity=0.287 Sum_probs=49.5
Q ss_pred ccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcC----------CHHHHHHHHHHHHHHhCCCEEEeCCC------CCc
Q 026125 133 LPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYES----------STNQAVDTAVRILKEGGMDAIKLEGG------SPS 196 (243)
Q Consensus 133 ~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~----------s~e~Av~nA~Rl~keaGAdaVKLEGg------~~~ 196 (243)
..-..+.+...++.+-+.++..++--..|+.+-.. ++.+. .+.|++.|.|++-+-.. .+.
T Consensus 20 ~~~~~~~~~~~v~~~~~~~D~~~~NlE~~~~~~~~~~~~~~~~f~~~~~~----~~~L~~~G~d~~tlaNNH~fD~G~~g 95 (239)
T cd07381 20 RKYDFDPLFEDVKPLLRAADLAIGNLETPLTDKGSPAPSKYPHFRAPPEV----ADALKAAGFDVVSLANNHTLDYGEEG 95 (239)
T ss_pred CCCCchhHHHHHHHHHhcCCEEEEEeecCccCCCCcCCCCceEecCCHHH----HHHHHHhCCCEEEcccccccccchHH
Confidence 34566777888888888776553333334322211 13444 47888899999988532 223
Q ss_pred hHHHHHHHHHcCCceeec
Q 026125 197 RITAARGIVEAGIAVMGH 214 (243)
Q Consensus 197 ~~~~i~~L~~~GIPV~GH 214 (243)
...+++.|.++||+..|=
T Consensus 96 l~~t~~~l~~~~i~~~g~ 113 (239)
T cd07381 96 LLDTLDALDEAGIAHAGA 113 (239)
T ss_pred HHHHHHHHHHcCCceeEC
Confidence 445678899999998763
No 488
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=63.05 E-value=99 Score=26.60 Aligned_cols=124 Identities=19% Similarity=0.211 Sum_probs=65.5
Q ss_pred CHHHHHHhhhC-CCcEEEE-ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC-Cc-
Q 026125 80 TLTHLRQKHKN-GEPITMV-TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR-PL- 155 (243)
Q Consensus 80 tv~~Lr~~kk~-g~~Itml-TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~-~f- 155 (243)
++..+++.++. +.|+..- ..-|...|.-+-++|+|.+++|+++- .| .+.+. .+.+..+. .+
T Consensus 61 ~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l------~d-----p~~~~----~i~~~~g~~~i~ 125 (234)
T cd04732 61 NLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAV------KN-----PELVK----ELLKEYGGERIV 125 (234)
T ss_pred CHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHH------hC-----hHHHH----HHHHHcCCceEE
Confidence 34444444332 3454432 44777778877789999999997662 11 12222 22222222 33
Q ss_pred EEeeCCCCCC------cCCHHHHHHHHHHHHHHhCCCEEEeCCCCC------chHHHHHHHHHc-CCceeeccCCcc
Q 026125 156 LVGDLPFGTY------ESSTNQAVDTAVRILKEGGMDAIKLEGGSP------SRITAARGIVEA-GIAVMGHVGLTP 219 (243)
Q Consensus 156 vVaDmPfgsY------~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~------~~~~~i~~L~~~-GIPV~GHiGLtP 219 (243)
+..|.+-+.+ ..+..+.++.+. .+.+.||+.+-+-+-.. ...+.++.+.+. .|||++-=|...
T Consensus 126 ~sid~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~ 201 (234)
T cd04732 126 VGLDAKDGKVATKGWLETSEVSLEELAK-RFEELGVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSS 201 (234)
T ss_pred EEEEeeCCEEEECCCeeecCCCHHHHHH-HHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCC
Confidence 3366654311 112223333343 44578999887653210 113456777765 899998766653
No 489
>PLN02489 homocysteine S-methyltransferase
Probab=63.02 E-value=54 Score=31.02 Aligned_cols=103 Identities=17% Similarity=0.072 Sum_probs=60.6
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEE
Q 026125 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLV 157 (243)
Q Consensus 79 ~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvV 157 (243)
++..++++.++ ..+.+..++|+|+|+.. +--.++|+..-+++++... +.|+++
T Consensus 160 ~~~~e~~~~~~-------------~qi~~l~~~gvD~i~~E-------------T~~~l~E~~a~~~~~~~~~~~~p~~i 213 (335)
T PLN02489 160 VTLEKLKDFHR-------------RRLQVLAEAGPDLIAFE-------------TIPNKLEAQAYVELLEEENIKIPAWI 213 (335)
T ss_pred CCHHHHHHHHH-------------HHHHHHHhCCCCEEEEe-------------ccCChHHHHHHHHHHHHcCCCCeEEE
Confidence 67788877764 34555668999999986 2235677777777776543 466544
Q ss_pred -eeCCCC---CCcCCHHHHHHHHHHHHHH-hCCC--EEEeCCCCCchHHHHHHHHHc-CCcee
Q 026125 158 -GDLPFG---TYESSTNQAVDTAVRILKE-GGMD--AIKLEGGSPSRITAARGIVEA-GIAVM 212 (243)
Q Consensus 158 -aDmPfg---sY~~s~e~Av~nA~Rl~ke-aGAd--aVKLEGg~~~~~~~i~~L~~~-GIPV~ 212 (243)
...+-+ ..+.+.+++++ .+.+ .+++ +++|- +.+....+++.|... .+|++
T Consensus 214 S~t~~~~~~l~~G~~~~~~~~----~~~~~~~~~~iGiNC~-~p~~~~~~l~~l~~~~~~pl~ 271 (335)
T PLN02489 214 SFNSKDGVNVVSGDSLLECAS----IADSCKKVVAVGINCT-PPRFIHGLILSIRKVTSKPIV 271 (335)
T ss_pred EEEeCCCCccCCCCcHHHHHH----HHHhcCCceEEEecCC-CHHHHHHHHHHHHhhcCCcEE
Confidence 333222 23345566644 4433 2444 47775 445566677777664 45543
No 490
>PRK06256 biotin synthase; Validated
Probab=63.01 E-value=73 Score=29.34 Aligned_cols=68 Identities=22% Similarity=0.298 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe--CCCC------------CchHHHHH
Q 026125 137 LEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL--EGGS------------PSRITAAR 202 (243)
Q Consensus 137 ldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL--EGg~------------~~~~~~i~ 202 (243)
+++++..++.|++..... +.+..+ . .+.+.+ +.++++|++.+.+ |... +.....++
T Consensus 125 ~~~~~e~i~~i~~~~~i~-~~~~~g---~-l~~e~l-----~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~ 194 (336)
T PRK06256 125 VDQVVEAVKAIKEETDLE-ICACLG---L-LTEEQA-----ERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCE 194 (336)
T ss_pred HHHHHHHHHHHHhcCCCc-EEecCC---c-CCHHHH-----HHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHH
Confidence 567777777787653222 233322 2 355554 5577899998854 3310 11235577
Q ss_pred HHHHcCCceeec
Q 026125 203 GIVEAGIAVMGH 214 (243)
Q Consensus 203 ~L~~~GIPV~GH 214 (243)
.+.++||+|+.+
T Consensus 195 ~a~~~Gi~v~~~ 206 (336)
T PRK06256 195 MVKAAGIEPCSG 206 (336)
T ss_pred HHHHcCCeeccC
Confidence 888899998865
No 491
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=62.74 E-value=78 Score=30.45 Aligned_cols=106 Identities=18% Similarity=0.258 Sum_probs=63.0
Q ss_pred HHHHHHHcCCCEEEeCcch----hh-----hhccCCCCccCCHHHHH--HHHHHHHcccCCCcEEeeCCCCCCc---CCH
Q 026125 104 SAVHLDSAGIDICLVGDSA----AM-----VVHGHDTTLPITLEEML--VHCRAVARGAKRPLLVGDLPFGTYE---SST 169 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSl----gm-----v~lG~~dT~~vTldeMi--~h~~aV~Rga~~~fvVaDmPfgsY~---~s~ 169 (243)
.|....+||+|+|.=.|.+ +. -..||.++.-++..-=. ..-.=-|.+++.++-.+| =-+|+ .|.
T Consensus 147 ~Avs~A~AGADiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgD--RksYQmdp~n~ 224 (320)
T cd04823 147 QALVQAEAGADIVAPSDMMDGRIGAIREALDAEGFTNVSILSYAAKYASAFYGPFRDALGSAPRKGD--KKTYQMDPANS 224 (320)
T ss_pred HHHHHHHhCCCEEEcccchhhHHHHHHHHHHHCCCCCCceeechHHhhhhccchhHHHhcCCCCCCC--ccccCCCCCCH
Confidence 3555668999999766543 11 23466665444433110 000113445544433333 11344 356
Q ss_pred HHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH-cCCceee
Q 026125 170 NQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE-AGIAVMG 213 (243)
Q Consensus 170 e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~-~GIPV~G 213 (243)
.+|++.+.+=++| |||.+.+.-+.. -.++|+.+.+ ..+||.+
T Consensus 225 ~eAlre~~~Di~E-GAD~lMVKPal~-YLDIi~~~k~~~~lPvaa 267 (320)
T cd04823 225 REALREVALDIAE-GADMVMVKPGMP-YLDIIRRVKDEFGVPTFA 267 (320)
T ss_pred HHHHHHHHhhHHh-CCCEEEEcCCch-HHHHHHHHHHhcCCCEEE
Confidence 7899999888865 899999998865 3677887765 5678764
No 492
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=62.73 E-value=64 Score=27.75 Aligned_cols=72 Identities=7% Similarity=0.018 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHHcCCceeec
Q 026125 136 TLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 136 TldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~~GIPV~GH 214 (243)
-+.+++.-.....+.....+++.+.+ ++++-.+....++ +.++|+|-+-... +.....++.+.+.||||+.-
T Consensus 13 ~~~~~~~gi~~~~~~~g~~~~~~~~~------~~~~~~~~i~~~~-~~~~dgiii~~~~~~~~~~~~~~~~~~~iPvV~~ 85 (289)
T cd01540 13 WFQTEWKFAKKAAKEKGFTVVKIDVP------DGEKVLSAIDNLG-AQGAKGFVICVPDVKLGPAIVAKAKAYNMKVVAV 85 (289)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEccCC------CHHHHHHHHHHHH-HcCCCEEEEccCchhhhHHHHHHHHhCCCeEEEe
Confidence 45567776666766666565555432 2333333333344 5789999997643 23355578899999999875
No 493
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=62.45 E-value=71 Score=28.57 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEeCCCCC-chHHHHHHHHHcCCceeeccCCccc
Q 026125 168 STNQAVDTAVRILKEGGMDAIKLEGGSP-SRITAARGIVEAGIAVMGHVGLTPQ 220 (243)
Q Consensus 168 s~e~Av~nA~Rl~keaGAdaVKLEGg~~-~~~~~i~~L~~~GIPV~GHiGLtPQ 220 (243)
+.+.-+...-.++ ..|+|+|-+-.... .....+++..++||||+.+-.-.|.
T Consensus 76 d~~~Q~~~i~~~i-a~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~d~~~~~ 128 (322)
T COG1879 76 DVAKQIAQIEDLI-AQGVDAIIINPVDPDALTPAVKKAKAAGIPVVTVDSDIPG 128 (322)
T ss_pred ChHHHHHHHHHHH-HcCCCEEEEcCCChhhhHHHHHHHHHCCCcEEEEecCCCC
Confidence 3443333333444 46899999965532 2456689999999999999877665
No 494
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=62.43 E-value=1.4e+02 Score=28.81 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=47.2
Q ss_pred CcEEE-EecC-C-HHHHHHHHHcCCCEEEeCcchhhhhcc---CCCCccCCHHHHHHHHHHHHccc---CCCcEEeeCCC
Q 026125 92 EPITM-VTAY-D-YPSAVHLDSAGIDICLVGDSAAMVVHG---HDTTLPITLEEMLVHCRAVARGA---KRPLLVGDLPF 162 (243)
Q Consensus 92 ~~Itm-lTAY-D-~~sA~iae~AGiDiILVGDSlgmv~lG---~~dT~~vTldeMi~h~~aV~Rga---~~~fvVaDmPf 162 (243)
.||.+ +..+ + ...|++++..|+|.|-|...-|..-.+ +.+...++..+.+..+....+.. +..-|++|=
T Consensus 215 ~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasG-- 292 (392)
T cd02808 215 KPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASG-- 292 (392)
T ss_pred ceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEEC--
Confidence 56643 3445 3 356677777779999765443322111 11111233334333222222111 233467764
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 163 GTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 163 gsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
+. .+..++ .+.+ ..|||+|.+-
T Consensus 293 -GI-~~g~Dv----~kal-aLGAd~V~ig 314 (392)
T cd02808 293 -GL-RTGADV----AKAL-ALGADAVGIG 314 (392)
T ss_pred -CC-CCHHHH----HHHH-HcCCCeeeec
Confidence 45 477777 4566 4799999984
No 495
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=62.40 E-value=69 Score=28.51 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceee
Q 026125 137 LEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMG 213 (243)
Q Consensus 137 ldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~G 213 (243)
+.+++......++.....+++.+.. .+.++-.+. .+.+.+.++|+|-+.+........++.+.+.||||+-
T Consensus 79 ~~~i~~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~-~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~ 149 (342)
T PRK10014 79 YAELTAGLTEALEAQGRMVFLLQGG-----KDGEQLAQR-FSTLLNQGVDGVVIAGAAGSSDDLREMAEEKGIPVVF 149 (342)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCC-----CCHHHHHHH-HHHHHhCCCCEEEEeCCCCCcHHHHHHHhhcCCCEEE
Confidence 4555555554444444333443321 123322222 2333346788887765532223446677778888763
No 496
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=62.36 E-value=67 Score=31.78 Aligned_cols=104 Identities=17% Similarity=0.132 Sum_probs=58.1
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCC-CEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc--------
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGI-DICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-------- 151 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGi-DiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-------- 151 (243)
-..++++++.|.. +...|.++++.|+ |.|.+.-- .=||.+.. +.-.++--...++...
T Consensus 152 ~~~v~~L~~~G~i-------t~~eA~~A~~~g~aD~Ivvq~E----AGGH~g~~--~~~~Llp~v~~l~d~v~~~~~~~~ 218 (418)
T cd04742 152 ERILKKLLAEGKI-------TEEQAELARRVPVADDITVEAD----SGGHTDNR--PLSVLLPTIIRLRDELAARYGYRR 218 (418)
T ss_pred HHHHHHHHHcCCC-------CHHHHHHHHhCCCCCEEEEccc----CCCCCCCc--cHHhHHHHHHHHHHHHhhccccCC
Confidence 3456677777755 8899999999996 88887622 22554432 2223333333333322
Q ss_pred CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe--------CCCCCchHHHHHHHHHcCC
Q 026125 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL--------EGGSPSRITAARGIVEAGI 209 (243)
Q Consensus 152 ~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL--------EGg~~~~~~~i~~L~~~GI 209 (243)
+.| |++- |+- .+++.+ ...+ ..|||+|.+ |-+. .+..-+.|++++.
T Consensus 219 ~ip-ViAA---GGI-~tg~~v----aAA~-alGAd~V~~GT~flat~Ea~~--s~~~K~~L~~a~~ 272 (418)
T cd04742 219 PIR-VGAA---GGI-GTPEAA----AAAF-ALGADFIVTGSINQCTVEAGT--SDAVKDLLQKAGV 272 (418)
T ss_pred Cce-EEEE---CCC-CCHHHH----HHHH-HcCCcEEeeccHHHhCccccC--CHHHHHHHHhCCC
Confidence 344 4433 344 356655 2334 379999987 3332 2344456666554
No 497
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=62.35 E-value=52 Score=29.31 Aligned_cols=67 Identities=21% Similarity=0.257 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
..|.+++..|+++|.+-|.-|+ +++ ++ .|++ +.|++.++.|++++ | +- .|+|++ .+++ +
T Consensus 138 ~~a~aa~~~G~~~i~Le~~sGa---~~~----v~-~e~i---~~Vk~~~~~Pv~vG---G-GI-rs~e~a----~~l~-~ 196 (205)
T TIGR01769 138 AYCLAAKYFGMKWVYLEAGSGA---SYP----VN-PETI---SLVKKASGIPLIVG---G-GI-RSPEIA----YEIV-L 196 (205)
T ss_pred HHHHHHHHcCCCEEEEEcCCCC---CCC----CC-HHHH---HHHHHhhCCCEEEe---C-CC-CCHHHH----HHHH-H
Confidence 3577888999999966543333 222 22 3444 45555566675543 2 34 377777 4455 4
Q ss_pred hCCCEEEe
Q 026125 183 GGMDAIKL 190 (243)
Q Consensus 183 aGAdaVKL 190 (243)
.|||.|-+
T Consensus 197 ~GAD~VVV 204 (205)
T TIGR01769 197 AGADAIVT 204 (205)
T ss_pred cCCCEEEe
Confidence 78998854
No 498
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=62.29 E-value=1.4e+02 Score=27.97 Aligned_cols=111 Identities=19% Similarity=0.245 Sum_probs=63.0
Q ss_pred CCCcEEEEecCCHH-------HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHc--ccCCCcEEeeC
Q 026125 90 NGEPITMVTAYDYP-------SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR--GAKRPLLVGDL 160 (243)
Q Consensus 90 ~g~~ItmlTAYD~~-------sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R--ga~~~fvVaDm 160 (243)
.+.||+++|.|+.. +.+-+.++|+|-++|-|- ..||--. ....++ |....|++
T Consensus 93 ~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDL--------------P~ee~~~-~~~~~~~~gi~~I~lv--- 154 (265)
T COG0159 93 VKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDL--------------PPEESDE-LLKAAEKHGIDPIFLV--- 154 (265)
T ss_pred CCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCC--------------ChHHHHH-HHHHHHHcCCcEEEEe---
Confidence 45699999999985 345778899999999863 3343222 222333 33333333
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHh----------CCCEEEeCCCCCchHHHHHHHHH-cCCceeeccCC-ccccccccc
Q 026125 161 PFGTYESSTNQAVDTAVRILKEG----------GMDAIKLEGGSPSRITAARGIVE-AGIAVMGHVGL-TPQAISVLG 226 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~kea----------GAdaVKLEGg~~~~~~~i~~L~~-~GIPV~GHiGL-tPQ~~~~~G 226 (243)
+- .++++-++ ++.+.+ |+.++..+.... ..+.++++.+ .++||+-=.|. .|+++..++
T Consensus 155 ---aP-tt~~~rl~---~i~~~a~GFiY~vs~~GvTG~~~~~~~~-~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~ 224 (265)
T COG0159 155 ---AP-TTPDERLK---KIAEAASGFIYYVSRMGVTGARNPVSAD-VKELVKRVRKYTDVPVLVGFGISSPEQAAQVA 224 (265)
T ss_pred ---CC-CCCHHHHH---HHHHhCCCcEEEEecccccCCCcccchh-HHHHHHHHHHhcCCCeEEecCcCCHHHHHHHH
Confidence 22 23333332 333333 677777764433 4555666655 58999876665 344444333
No 499
>PLN02489 homocysteine S-methyltransferase
Probab=62.29 E-value=53 Score=31.03 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=45.3
Q ss_pred CCcEEeeCC-CC-----------CCc--CCHHHHHHHH---HHHHHHhCCCEEEeCCCCC--chHHHHHHHHHcC--Cce
Q 026125 153 RPLLVGDLP-FG-----------TYE--SSTNQAVDTA---VRILKEGGMDAIKLEGGSP--SRITAARGIVEAG--IAV 211 (243)
Q Consensus 153 ~~fvVaDmP-fg-----------sY~--~s~e~Av~nA---~Rl~keaGAdaVKLEGg~~--~~~~~i~~L~~~G--IPV 211 (243)
..+|.++++ +| .|+ .+.+++.+.= ++.+.++|+|.+-+|=-.. +...+++++.+.+ +||
T Consensus 132 ~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~ 211 (335)
T PLN02489 132 PILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPA 211 (335)
T ss_pred CcEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeE
Confidence 467778884 44 343 3555555442 3334479999999995532 2344566666664 676
Q ss_pred eeccCCcccccccccCccccccCHHhhc
Q 026125 212 MGHVGLTPQAISVLGGFRPQGKNVTSAV 239 (243)
Q Consensus 212 ~GHiGLtPQ~~~~~GGykvqGkt~~~A~ 239 (243)
+- .++.. -+|.-.-|-+.+++.
T Consensus 212 ~i--S~t~~----~~~~l~~G~~~~~~~ 233 (335)
T PLN02489 212 WI--SFNSK----DGVNVVSGDSLLECA 233 (335)
T ss_pred EE--EEEeC----CCCccCCCCcHHHHH
Confidence 53 33332 234444555555554
No 500
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=62.18 E-value=1.4e+02 Score=27.98 Aligned_cols=84 Identities=15% Similarity=0.212 Sum_probs=52.1
Q ss_pred CCHH-HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHH
Q 026125 100 YDYP-SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVR 178 (243)
Q Consensus 100 YD~~-sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~R 178 (243)
||.. .+.+++.++.|.+-++=... .-+..+. ..-.++..+...+.+++..+.|+++=--+| ..+.+++ .+
T Consensus 127 ~~~~~~~~~i~~~~adalel~l~~~-q~~~~~~-~~~df~~~~~~i~~l~~~~~vPVivK~~g~---g~s~~~a----~~ 197 (326)
T cd02811 127 YGVEEARRAVEMIEADALAIHLNPL-QEAVQPE-GDRDFRGWLERIEELVKALSVPVIVKEVGF---GISRETA----KR 197 (326)
T ss_pred CCHHHHHHHHHhcCCCcEEEeCcch-HhhcCCC-CCcCHHHHHHHHHHHHHhcCCCEEEEecCC---CCCHHHH----HH
Confidence 4443 45567778899886652111 0122222 222477777888999998888977644455 2355555 44
Q ss_pred HHHHhCCCEEEeCCC
Q 026125 179 ILKEGGMDAIKLEGG 193 (243)
Q Consensus 179 l~keaGAdaVKLEGg 193 (243)
+. ++|+|+|-+.|.
T Consensus 198 l~-~~Gvd~I~vsG~ 211 (326)
T cd02811 198 LA-DAGVKAIDVAGA 211 (326)
T ss_pred HH-HcCCCEEEECCC
Confidence 54 799999998763
Done!