BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026126
(243 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54378|GCST_BACSU Aminomethyltransferase OS=Bacillus subtilis (strain 168) GN=gcvT
PE=1 SV=2
Length = 362
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 108 DLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIM-KNA 166
D+SH G + VSG+D + FL T + L G+ T P T+D + +N
Sbjct: 48 DVSHMGEVEVSGNDSLSFLQRLMTNDVSALTPGRAQYTAMCYPDGGTVDDLLIYQKGENR 107
Query: 167 VILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDL 224
+LV++ + ++ A V+I + + Q L V GPK+ ++++L D+
Sbjct: 108 YLLVINASNIDKDLAWMKEHA--AGDVQIDNQSDQIALLAVQGPKAEAILKNLTDADV 163
>sp|Q8RCV9|GCST_THETN Aminomethyltransferase OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=gcvT PE=3
SV=1
Length = 374
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 8/131 (6%)
Query: 98 DAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDI 157
+A N D+SH G I V G D FL N T + L + Q T ID
Sbjct: 46 EAVRNAAGLFDVSHMGEIIVKGKDAFPFLQNLLTNDLSKLNDNQVLYTFMCNHNGGVIDD 105
Query: 158 AHAWIMKNAVILVVSPLTCSSITE----MLNKYVFFADKVEIQDITKQTCLFVVVGPKSN 213
+ N L+V + ++I + MLN + KVEI++++ + + GPK+
Sbjct: 106 LLVYKYSNNYYLLV--VNAANIEKDYKWMLNNAGIY--KVEIENVSDKIAELAIQGPKAE 161
Query: 214 QVMRDLNLGDL 224
++++ L DL
Sbjct: 162 EILQKLTDEDL 172
>sp|C4K7V2|YGFZ_HAMD5 tRNA-modifying protein YgfZ OS=Hamiltonella defensa subsp.
Acyrthosiphon pisum (strain 5AT) GN=HDEF_2079 PE=3 SV=1
Length = 336
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 109 LSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTAR---TIDIAHAWIMKN 165
L+ +G IRV+G DR+++L Q T + +L+E Q P + T+ + H +K
Sbjct: 25 LNDWGLIRVTGKDRVKYLQGQITLDVPLLKENQHILGAHCDPKGKILSTVRLFH--YLKG 82
Query: 166 AVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRD 218
+ L + E L KY F+ KVEI DI + T L + G ++ +V+++
Sbjct: 83 LAFITRKSLLHDELME-LRKYAVFS-KVEI-DIAESTVLLGIAGDQARKVLKN 132
>sp|Q5WF30|GCST_BACSK Aminomethyltransferase OS=Bacillus clausii (strain KSM-K16) GN=gcvT
PE=3 SV=1
Length = 367
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 99 AADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIA 158
A N D+SH G + V G D + L T + L++ Q T + T+D
Sbjct: 42 AVRNAAGLFDVSHMGELLVEGPDALNNLQALVTNDLSKLQDNQAQYNAMCTESGGTVDDL 101
Query: 159 HAWIM-KNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMR 217
+ +NA +LV++ S E + +V + +V + DI+ +T L V GPK+ V++
Sbjct: 102 IVYRRNENAYLLVLNAANIQSDIEWIRAHV--SGQVTLTDISNETALLAVQGPKALAVLQ 159
Query: 218 DL 219
L
Sbjct: 160 TL 161
>sp|A8F8M9|GCST_THELT Aminomethyltransferase OS=Thermotoga lettingae (strain ATCC BAA-301
/ DSM 14385 / TMO) GN=gcvT PE=3 SV=1
Length = 362
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 5/136 (3%)
Query: 104 VAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTID--IAHAW 161
VA D+SH G I V G+D ++F+ T +F+ LR GQ TV ID + + +
Sbjct: 43 VALFDVSHMGEIFVEGEDTVEFVDYLLTNSFKNLRIGQVMYTVMCNEMGGIIDDLLTYRF 102
Query: 162 IMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNL 221
K A+++V + ++N+ F V +++++ Q L V GP S + ++ +
Sbjct: 103 GEKQAMLVVNAANIEKDFDWIVNQSKQF--NVTVRNLSDQYGLIAVQGPLSERFLKTF-V 159
Query: 222 GDLVGEAYGTHRHYSI 237
D+ +Y T YS+
Sbjct: 160 SDIDSLSYYTFASYSV 175
>sp|B9K6R7|GCST_THENN Aminomethyltransferase OS=Thermotoga neapolitana (strain ATCC 49049
/ DSM 4359 / NS-E) GN=gcvT PE=3 SV=1
Length = 363
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 95 EALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTART 154
E + A V D+SH G I V G + + F++ T +F + EG+ TV T
Sbjct: 34 EEVMAVRKSVGVFDVSHMGEIVVEGQETVDFVNFLVTNDFSAIPEGKAMYTVMCNETGGI 93
Query: 155 IDIAHAW-IMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSN 213
+D + I I+VV+ E + + + VE+++++ +T L GPKS
Sbjct: 94 VDDLVVYRISHEKAIMVVNAANIEKDYEWIKVHAKNFN-VEVRNVSDETALVAFQGPKSQ 152
Query: 214 QVMRDLNLGDLVGEAY 229
+ ++ + DL G Y
Sbjct: 153 ETLQRVVDIDLEGIGY 168
>sp|Q65HF9|GCST_BACLD Aminomethyltransferase OS=Bacillus licheniformis (strain DSM 13 /
ATCC 14580) GN=gcvT PE=3 SV=1
Length = 364
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 6/159 (3%)
Query: 70 LLETVKSEGAK---ISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFL 126
L + K G K G + F + E +A D+SH G + ++G D + FL
Sbjct: 7 LFDLYKEYGGKTIDFGGWELPVQFSSIKEEHEAVRTKAGLFDVSHMGEVEITGTDSLPFL 66
Query: 127 HNQSTANFEILREGQGCDTVFVTPTARTIDIAHAW-IMKNAVILVVSPLTCSSITEMLNK 185
T + L+EG T TID + N +LV++ + +NK
Sbjct: 67 QKLLTNDVSTLKEGGAQYTAMCYEDGGTIDDLLVYKKAANVYMLVINAANIDKDVDWMNK 126
Query: 186 YVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDL 224
++ V +++++ + L + GPK+ +++ + DL
Sbjct: 127 HI--KGDVSVRNVSDEIALLALQGPKAEAILKQVADHDL 163
>sp|C3PHK3|GCST_CORA7 Aminomethyltransferase OS=Corynebacterium aurimucosum (strain ATCC
700975 / DSM 44827 / CN-1) GN=gcvT PE=3 SV=1
Length = 370
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 2/128 (1%)
Query: 90 FGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVT 149
+ N+ E A N DLSH G I V+G D +FL +N L+EG+ ++
Sbjct: 32 YDNELEEHRAVRNAAGLFDLSHMGEIWVNGPDAAEFLSYCFISNLTTLKEGKAKYSMICA 91
Query: 150 PTARTIDIAHAWIMKNAVILVV-SPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVV 208
ID + ++ LVV + ++ + LN+ D V++++ ++ + V
Sbjct: 92 EDGGIIDDLITYRLEETKFLVVPNAGNADTVWDALNERAEGFD-VDLKNESRDVAMIAVQ 150
Query: 209 GPKSNQVM 216
GPK+ +++
Sbjct: 151 GPKALEIL 158
>sp|B0KD95|GCST_THEP3 Aminomethyltransferase OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=gcvT PE=3 SV=1
Length = 368
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Query: 98 DAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDI 157
+A N D+SH G I V G + FL N T + L++ Q T +D
Sbjct: 40 EAVRNAAGLFDVSHMGEITVKGREAFNFLQNLITNDLSKLKDNQVFYTFMCNYNGGVVDD 99
Query: 158 AHAWIMKNA-VILVVSPLTCSSITEML--NKYVFFADKVEIQDITKQTCLFVVVGPKSNQ 214
+ + +LVV+ + + NK V+ +VEI +I+ + V GPK+ +
Sbjct: 100 LLVYKYSDEHFLLVVNAANIEKDYKWMKDNKGVY---EVEINNISDEISELAVQGPKAEE 156
Query: 215 VMRDLNLGDL 224
+++ L DL
Sbjct: 157 ILQKLTYTDL 166
>sp|C5D4A2|GCST_GEOSW Aminomethyltransferase OS=Geobacillus sp. (strain WCH70) GN=gcvT
PE=3 SV=1
Length = 364
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 108 DLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNA- 166
D+SH G V GDD + FL T + L +G+ ++ T+D I K A
Sbjct: 48 DVSHMGEFVVKGDDSLAFLQKMMTNDVSKLTDGRVQYSLMCYEDGGTVD--DLLIYKKAD 105
Query: 167 --VILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDL 224
+LVV+ E L+ ++F VE+ +I+++ + GP + QV++ L DL
Sbjct: 106 GHYLLVVNAANIEKDFEWLHGHLF--GDVELVNISQEIAQLALQGPLAEQVLQKLTNTDL 163
>sp|A8FF41|GCST_BACP2 Aminomethyltransferase OS=Bacillus pumilus (strain SAFR-032)
GN=gcvT PE=3 SV=1
Length = 365
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Query: 90 FGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVT 149
F + E +A D+SH G + + G D + FL T + L +G+ T
Sbjct: 30 FSSIKEEHEAVRTKAGLFDVSHMGEVEIKGQDALPFLQRLLTNDVSKLTDGKALYTAMCY 89
Query: 150 PTARTIDIAHAWIM-KNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVV 208
T+D + KN +LV++ E L ++ D V IQ+++ + L +
Sbjct: 90 EDGGTVDDLLVYQKEKNDYLLVINASNIEKDVEWLLQHQGEND-VLIQNVSDEIALLALQ 148
Query: 209 GPKSNQVMRDL 219
GP + +M+D+
Sbjct: 149 GPLAADIMKDV 159
>sp|A4IQV5|GCST_GEOTN Aminomethyltransferase OS=Geobacillus thermodenitrificans (strain
NG80-2) GN=gcvT PE=3 SV=1
Length = 365
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 108 DLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIM-KNA 166
D+SH G I V G + FL T + LR G+ T+ +A T+D + ++
Sbjct: 48 DVSHMGEIIVRGGGSLPFLQKLMTNDVAKLRPGRVQYTLMCDESAGTVDDLLIYQKGEDD 107
Query: 167 VILVVSPLTCSSITEMLNKYVFFAD-KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDL 224
+LVV+ L+++ AD VE++D++ +T L + GP + +V++ L DL
Sbjct: 108 YLLVVNAANTEKDFAWLSEH---ADGDVELEDVSAETALLALQGPAAERVLQKLTDMDL 163
>sp|Q5KX76|GCST_GEOKA Aminomethyltransferase OS=Geobacillus kaustophilus (strain HTA426)
GN=gcvT PE=3 SV=1
Length = 364
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 108 DLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIM-KNA 166
D+SH G I V G + FL T + LR G+ T+ T+D + +N
Sbjct: 48 DVSHMGEIVVRGRGSLAFLQKLMTNDVAKLRPGRAQYTLMCYEDGGTVDDLLIYQKGEND 107
Query: 167 VILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDL 224
+LVV+ L+ +V VE+QD++ +T + GP + +V++ L DL
Sbjct: 108 YLLVVNAANTEKDFAWLSGHV--EGDVELQDVSSETAQLALQGPAAERVLQRLTDFDL 163
>sp|Q4JXU5|GCST_CORJK Aminomethyltransferase OS=Corynebacterium jeikeium (strain K411)
GN=gcvT PE=3 SV=1
Length = 389
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 99 AADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIA 158
A N V DLSH G +RV+G +FL + + ++ G+ ++ T + ID
Sbjct: 41 AVRNAVGVFDLSHMGEVRVTGPQAAEFLDHALISKLSAVKVGKAKYSMICTESGGIIDDL 100
Query: 159 HAW-IMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMR 217
+ + N ++V + ++ L D VE+ + + T + V GPK+ Q M
Sbjct: 101 ITYRLGDNEFLIVPNAGNVDNVVSALQGRTEGFD-VEVNNESDATSMIAVQGPKAAQAML 159
Query: 218 DL 219
++
Sbjct: 160 EI 161
>sp|Q1AR89|GCST_RUBXD Aminomethyltransferase OS=Rubrobacter xylanophilus (strain DSM 9941
/ NBRC 16129) GN=gcvT PE=3 SV=1
Length = 372
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 3/132 (2%)
Query: 108 DLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAV 167
D+SH G + G D + L T + L EGQ + T+D A+
Sbjct: 55 DVSHMGEVAFRGPDAERALQRLLTRDVSRLGEGQAGYAAVCLESGGTVDDVIAYRRGEGF 114
Query: 168 ILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGE 227
++VV+ ++ D VEI D T++ L + GP++ ++++ GDL
Sbjct: 115 LVVVNAANREKDLAHFRRHTADLD-VEISDETEEWALLALQGPEAERLLQPFVAGDL--S 171
Query: 228 AYGTHRHYSINV 239
A G +R +V
Sbjct: 172 ALGRYRFLETHV 183
>sp|B0K242|GCST_THEPX Aminomethyltransferase OS=Thermoanaerobacter sp. (strain X514)
GN=gcvT PE=3 SV=1
Length = 368
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 6/130 (4%)
Query: 98 DAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDI 157
+A N D+SH G I V G + FL N T + L+ Q T +D
Sbjct: 40 EAVRNAAGLFDVSHMGEITVKGREAFNFLQNLITNDLSKLKGNQVLYTFMCNYNGGVVDD 99
Query: 158 AHAWIMKNA-VILVVSPLTCSSITEML--NKYVFFADKVEIQDITKQTCLFVVVGPKSNQ 214
+ + LVV+ + + NK V+ +VEI++I+ + + GPK+ +
Sbjct: 100 LLVYKYSDEHFYLVVNAANIEKDYKWMKDNKGVY---EVEIENISDEVAELAIQGPKAEE 156
Query: 215 VMRDLNLGDL 224
+++ L DL
Sbjct: 157 ILQKLTDTDL 166
>sp|A4J2F6|GCST_DESRM Aminomethyltransferase OS=Desulfotomaculum reducens (strain MI-1)
GN=gcvT PE=3 SV=1
Length = 364
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Query: 98 DAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDI 157
A + D+SH G I++SG +F+ T + L+ G + P T+D
Sbjct: 40 QAVRSAAGLFDVSHMGEIQISGPTAREFVQRLVTNDISRLKPGCAIYSPMCNPQGGTVDD 99
Query: 158 AHAWIMKNAVILVV--SPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQV 215
+ +++ L+V + T ++++ V VEIQ++++ TC + GP++ ++
Sbjct: 100 LLVYQLEDQQYLLVVNASNTDKDFHWIVSQQV---PGVEIQNVSEVTCQLALQGPQAEKI 156
Query: 216 MRDLNLGDL 224
++ L DL
Sbjct: 157 LQRLTAVDL 165
>sp|B3QLF1|GCST_CHLP8 Aminomethyltransferase OS=Chlorobaculum parvum (strain NCIB 8327)
GN=gcvT PE=3 SV=1
Length = 365
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 108 DLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAW-IMKNA 166
D+SH G V G+ ++FL +T + + +GQ T+ + P +D + + +
Sbjct: 47 DVSHMGNFYVRGERALEFLQYVTTNDLGKIVDGQAQYTLMLYPDGGIVDDLIIYRVSADT 106
Query: 167 VILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVM 216
L+V+ C L+ +V + V +++ T + L + GPK+ +V+
Sbjct: 107 FFLIVNASNCEKDFAWLSDHVGGFEGVTLENRTSELSLIALQGPKAFEVL 156
>sp|Q8KBJ9|GCST_CHLTE Aminomethyltransferase OS=Chlorobium tepidum (strain ATCC 49652 /
DSM 12025 / TLS) GN=gcvT PE=3 SV=1
Length = 365
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 108 DLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAW-IMKNA 166
D+SH G V G ++FL +T + + +GQ T+ + P +D + + +
Sbjct: 47 DVSHMGNFYVRGARALEFLQYMTTNDLAKIVDGQAQYTLMLYPDGGIVDDLIIYRVSADT 106
Query: 167 VILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVM 216
L+V+ C + L+ ++ + V +++ T + L + GPKS ++
Sbjct: 107 FFLIVNASNCEKDFDWLSSHIGQFEGVALENHTSELSLIALQGPKSFDIL 156
>sp|Q3AVT0|GCST_SYNS9 Aminomethyltransferase OS=Synechococcus sp. (strain CC9902) GN=gcvT
PE=3 SV=1
Length = 365
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 12/156 (7%)
Query: 99 AADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTAR----- 153
A N V D+SH G +R+ G + L ++ + G+ C TV +
Sbjct: 38 AVRNSVGMFDISHMGVLRLEGANPKDTLQQLVPSDLHRIGPGEACYTVLLNDQGGIRDDL 97
Query: 154 -TIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKS 212
D+ + A++LV++ S T + + + A + + DI L + GP++
Sbjct: 98 IIYDLGAIDEKRGALVLVINAACADSDTAWIRERMEPA-GLTVTDIKNNGVLLALQGPQA 156
Query: 213 NQVMRDLNLGDLVGEAYGTHRHYSI-----NVFTAK 243
++ L+ DL G HR I +VFTA+
Sbjct: 157 IPLLEQLSGEDLSGLPRFGHRDLQIQGLSNSVFTAR 192
>sp|Q8YNF7|GCST_NOSS1 Aminomethyltransferase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=gcvT PE=3 SV=1
Length = 376
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 9/122 (7%)
Query: 98 DAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDI 157
+A N D+SH G+ + G + I L ++ L+ GQ TV + P ID
Sbjct: 47 EAVRNAAGMFDISHMGKFTLQGKNLISQLQGLVPSDLSRLQPGQAQYTVLLNPQGGIIDD 106
Query: 158 AHAWIM-------KNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGP 210
+ + A I+V + T +L+ ++V+ QDI+ L + GP
Sbjct: 107 IIVYYQGEDNTGTQQAFIIVNAATTSKDKAWILSH--LDQNQVQFQDISPAKVLIAIQGP 164
Query: 211 KS 212
K+
Sbjct: 165 KA 166
>sp|A8LFB7|GCST_FRASN Aminomethyltransferase OS=Frankia sp. (strain EAN1pec) GN=gcvT PE=3
SV=1
Length = 365
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 99 AADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTID-- 156
A V D+SH G+ RV+G +F++ T + + GQ T+ T +D
Sbjct: 43 AVRGAVGIFDVSHLGKARVAGPGAAEFVNTCLTNDLRRVGPGQAQYTLCCDETGGVVDDL 102
Query: 157 IAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVM 216
IA+ + + N V LV + + + L V + D+ + + V GP + +V+
Sbjct: 103 IAYYYAVDN-VFLVPNAANTAEVVRRLAAQA--PAGVAVTDLHTEFAVLAVQGPAAPEVL 159
Query: 217 RDLNL 221
R L L
Sbjct: 160 RKLGL 164
>sp|Q493E3|YGFZ_BLOPB tRNA-modifying protein YgfZ OS=Blochmannia pennsylvanicus (strain
BPEN) GN=BPEN_268 PE=3 SV=1
Length = 330
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 99 AADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIA 158
+ D + + L + +R+ G D IQ LHNQ T + + L + + P + I
Sbjct: 15 SKDLPLTFISLEEWTLVRLHGPDVIQCLHNQFTCDIQNLNKHKYSFAAHCNPKGKMISNL 74
Query: 159 HAWIMKNAVILVVSPLT-CSSITEMLNKYVFFADKVEIQD 197
+ + +KN + + L C E + KY+ F++ I D
Sbjct: 75 YVFHLKNQEMAFIERLNICKKQIEEMKKYMVFSNVTVIPD 114
>sp|Q3AET7|GCST_CARHZ Aminomethyltransferase OS=Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008) GN=gcvT PE=3 SV=1
Length = 360
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 104 VAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTID--IAHAW 161
V D+SH G I ++G +F++ T + L G T P T+D +A+ +
Sbjct: 46 VGMFDVSHMGEIEITGKQAERFVNYLITNDVSRLNSGDVIYTTMCYPDGGTVDDLLAYKY 105
Query: 162 IMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNL 221
+ +++V + + +L + D V + D++ +T + GP++ ++++ L
Sbjct: 106 STERYLLVVNAANKDKDLAHILQ---YRWDDVTVTDLSDETAEIALQGPRAQEILQKLTA 162
Query: 222 GDL 224
DL
Sbjct: 163 FDL 165
>sp|Q3B5U7|GCST_PELLD Aminomethyltransferase OS=Pelodictyon luteolum (strain DSM 273)
GN=gcvT PE=3 SV=1
Length = 365
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 99 AADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIA 158
A + D+SH G V G +FL + +T + + GQ V + P +D
Sbjct: 38 AVRSAAGLFDVSHMGNFYVKGPRAEEFLQHMTTNDLSRAKNGQAQYNVMLYPNGGIVDDL 97
Query: 159 HAW-IMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMR 217
+ I ++V+ C + L ++ D V ++D + L + GPK+ +++
Sbjct: 98 IIYRIDAQTFFIIVNAGNCEKDYQWLQEHAAEYDGVVLEDHSSAMSLIALQGPKAFDILK 157
Query: 218 DL 219
+
Sbjct: 158 KV 159
>sp|C1D0F7|GCST_DEIDV Aminomethyltransferase OS=Deinococcus deserti (strain VCD115 / DSM
17065 / LMG 22923) GN=gcvT PE=3 SV=1
Length = 357
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 108 DLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIM-KNA 166
D+SH G R+ G+ + FL + + + LR G+ +D + +++ +N
Sbjct: 55 DVSHMGEFRIQGEGALAFLQHVTPNDVSKLRPGRAQYNWLPNDRGGLVDDIYIYMVGENE 114
Query: 167 VILVVSPLTCSSITEMLNKYVFFAD--KVEIQDITKQTCLFVVVGPKSNQVMR---DLNL 221
++VV+ S+I + A V + + + + L V GPK+ +V++ D++L
Sbjct: 115 YLMVVN---ASNIDKDWAHLQTLAAGFGVTLTNESDRWALLAVQGPKAAEVLQPHVDVDL 171
Query: 222 GDLVGEAYGTHRHYSINVFTAK 243
G AY R + NV A+
Sbjct: 172 GSKKKNAYFPARLFGFNVHLAR 193
>sp|Q9K934|GCST_BACHD Aminomethyltransferase OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=gcvT PE=3
SV=1
Length = 365
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 4/161 (2%)
Query: 60 DLSPPPIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSG 119
+L P+ DL E + G + F + E +A D+SH G + V+G
Sbjct: 3 ELKKTPL-FDLYEQYGGKVIDFGGWALPVQFSSIKEEHEAVRTKAGLFDVSHMGEVEVTG 61
Query: 120 DDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIM-KNAVILVVSPLTCSS 178
+ +L T + +++GQ T T+D + ++ +LV++
Sbjct: 62 AQALNYLQRLVTNDVSKIKDGQAQYTAMCYENGGTVDDLLIYRRSEDQYLLVINAANIDK 121
Query: 179 ITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDL 219
+ K+ D V I +++ QT + GP + V++ L
Sbjct: 122 DIAWMEKHAI--DGVSITNVSNQTAQLALQGPVAENVLQTL 160
>sp|Q72LB1|GCST_THET2 Aminomethyltransferase OS=Thermus thermophilus (strain HB27 / ATCC
BAA-163 / DSM 7039) GN=gcvT PE=3 SV=1
Length = 349
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 99 AADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIA 158
A V D+SH G V G++ + FL + + L+ G+ ++ +D
Sbjct: 38 AVRRAVGVFDVSHMGEFLVRGEEALAFLQWATANDAGKLKVGRAQYSMLPNERGGVVDDI 97
Query: 159 HAWIMKNAVILVVSPLTCSSITEMLNKYVFFAD--KVEIQDITKQTCLFVVVGPKSNQVM 216
+ + + L+V + ++I + L A +VE++D +++T L + GPK+ ++
Sbjct: 98 YLYRLGEEEYLMV--VNAANIAKDLAHLQALAKGFRVELEDASERTALLALQGPKAQALL 155
Query: 217 RDL 219
+ L
Sbjct: 156 QGL 158
>sp|Q8CXD9|GCST_OCEIH Aminomethyltransferase OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=gcvT PE=3
SV=2
Length = 371
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 108 DLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTID--IAHAWIMKN 165
D+SH G I V G FL T + L G+ T+ T+D I + ++
Sbjct: 50 DVSHMGEISVKGPKSESFLQYVLTNDISKLEPGKAQYTIMCYEDGGTVDDLIVYKLDDED 109
Query: 166 AVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMR 217
+++V + T + K + D++ I+D++ Q + GPK+ ++++
Sbjct: 110 YLLVVNAANTEKDANWIKQKNTYSNDEIVIEDVSNQYVQLAIQGPKAVEILQ 161
>sp|B7K468|GCST_CYAP8 Aminomethyltransferase OS=Cyanothece sp. (strain PCC 8801) GN=gcvT
PE=3 SV=1
Length = 369
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 9/151 (5%)
Query: 69 DLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHN 128
DL+ K++ + SG + F + A V D+SH G+ + G + ++ L
Sbjct: 11 DLIVQQKAKLTEFSGWEMPVQFSKLKDEHQAVRTDVGMFDISHMGKFALQGTELLKSLQF 70
Query: 129 QSTANFEILREGQGCDTVFVTPTARTIDIAHAWIM-------KNAVILVVSPLTCSSITE 181
++ E L+ GQ TV + P ID + + A I+V + T T
Sbjct: 71 LVPSDLERLQPGQAQYTVLLNPQGGIIDDIIVYYQGITETGEQRANIIVNAGTTEKDKTW 130
Query: 182 MLNKYVFFADKVEIQDITKQTCLFVVVGPKS 212
+L+ K+ +D++ + L V GP+S
Sbjct: 131 LLSH--LDTQKITFKDLSGEKVLIAVQGPQS 159
>sp|A8MEG4|GCST_ALKOO Aminomethyltransferase OS=Alkaliphilus oremlandii (strain OhILAs)
GN=gcvT PE=3 SV=1
Length = 368
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 2/128 (1%)
Query: 98 DAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDI 157
+A N D+SH G I V G D F+ T + L + Q T P +D
Sbjct: 40 EAVRNAAGIFDVSHMGEIEVRGKDAEAFVQYLVTNDVAALEDNQIVYTFMCYPDGGIVDD 99
Query: 158 AHAW-IMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVM 216
+ K LVV+ +N+ D VEI +I+ V GPK+ +++
Sbjct: 100 LLVYKFNKEYYYLVVNASNSDKDFAWMNENKGAYD-VEIINISDSVSQVAVQGPKAEEIV 158
Query: 217 RDLNLGDL 224
++L DL
Sbjct: 159 QELTDTDL 166
>sp|Q8DKV6|GCST_THEEB Aminomethyltransferase OS=Thermosynechococcus elongatus (strain
BP-1) GN=gcvT PE=3 SV=1
Length = 366
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 10/146 (6%)
Query: 98 DAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDI 157
A V D+SH G++ + G+ + L N L+ GQ TV + +D
Sbjct: 42 QAVRQQVGMFDISHMGKLVLRGEGVLGALQTLVPTNLSQLQPGQAKYTVLLNEAGGIVDD 101
Query: 158 AHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMR 217
++ V +V+ T + KY +E+ D + L + GP + +
Sbjct: 102 VILYMGDGQVRCIVNAATTAKDWAWFQKY--LPASIEVIDESASQVLIALQGPAATATLS 159
Query: 218 ---DLNLGDLVGEAYGTHRHYSINVF 240
D LG++ T+RH +N+
Sbjct: 160 PLCDRPLGEI-----KTYRHAPVNLL 180
>sp|Q5SKX0|GCST_THET8 Aminomethyltransferase OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=gcvT PE=3 SV=1
Length = 349
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 99 AADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIA 158
A V D+SH G V G + + FL + + L+ G+ ++ +D
Sbjct: 38 AVRRAVGVFDVSHMGEFLVRGKEALAFLQWATANDAGKLKVGRAQYSMLPNERGGVVDDI 97
Query: 159 HAWIMKNAVILVVSPLTCSSITEMLNKYVFFAD--KVEIQDITKQTCLFVVVGPKSNQVM 216
+ + + L+V + ++I + L A +VE++D +++T L + GPK+ ++
Sbjct: 98 YLYRLGEEEYLMV--VNAANIAKDLAHLQALAKGFRVELEDASERTALLALQGPKAASLL 155
Query: 217 RDLNLGDL 224
+ L DL
Sbjct: 156 QGLTDLDL 163
>sp|B6YY21|GCST_THEON Probable aminomethyltransferase OS=Thermococcus onnurineus (strain
NA1) GN=gcvT PE=3 SV=1
Length = 398
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 14/131 (10%)
Query: 99 AADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIA 158
A NGVA D+SH G G D ++FL +T + G T+ + D
Sbjct: 39 AVRNGVAIFDVSHMGEFIFKGKDALEFLQYVTTNDISKPPAISGTYTLVLNERGAVKDET 98
Query: 159 HAWIMKNAVILVVSPLTCSSIT-EMLNKYV---------FFADKVEIQDITKQTCLFVVV 208
+ M N ++V C S E L + F +EI++ T +F +
Sbjct: 99 LVFNMGNDTYMMV----CDSDAFEKLEAWFNAIKRGIEKFGELDLEIENKTYDMAMFSIQ 154
Query: 209 GPKSNQVMRDL 219
GPK+ + +DL
Sbjct: 155 GPKARDLAKDL 165
>sp|Q73YK4|GCST_MYCPA Aminomethyltransferase OS=Mycobacterium paratuberculosis (strain
ATCC BAA-968 / K-10) GN=gcvT PE=3 SV=1
Length = 367
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Query: 98 DAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTID- 156
+A N V D+SH G+ V G +F+++ T + + G+ T+ + ID
Sbjct: 43 NATRNAVGLFDVSHLGKALVRGTGAARFVNSALTNDLNRIGPGKAQYTLCCNESGGVIDD 102
Query: 157 -IAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQV 215
IA+ ++ + + LV + +++ E L V ++++ + + V GP+S V
Sbjct: 103 LIAY-YVDDDEIFLVPNAANTAAVVEALQGAA--PAGVTVRNLHRSYAVLAVQGPRSANV 159
Query: 216 MRDLNL 221
+ +L L
Sbjct: 160 LAELGL 165
>sp|B1L9U1|GCST_THESQ Aminomethyltransferase OS=Thermotoga sp. (strain RQ2) GN=gcvT PE=3
SV=1
Length = 364
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 95 EALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTART 154
E + A V D+SH G V G + + F+ T NF L +G+ +V
Sbjct: 34 EEVMAVRKSVGMFDVSHMGEFLVKGPEAVSFIDFLITNNFSSLPDGKALYSVMCNENGGI 93
Query: 155 IDIAHAWIMKNAVILVVSP------LTCSSITEMLNKYVFFADK---VEIQDITKQTCLF 205
ID + V+ VSP + ++I + N ++ K VE+ +I+ T L
Sbjct: 94 ID--------DLVVYKVSPDEALMVVNAANIEKDFN-WIKSHSKNFNVEVSNISDTTALI 144
Query: 206 VVVGPKSNQVMRDL 219
GP++ + +++L
Sbjct: 145 AFQGPRAQEALQEL 158
>sp|A7Z6M4|GCST_BACA2 Aminomethyltransferase OS=Bacillus amyloliquefaciens (strain FZB42)
GN=gcvT PE=3 SV=1
Length = 366
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 3/136 (2%)
Query: 90 FGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVT 149
F + E +A D+SH G + VSG D + FL T + L+ G T
Sbjct: 30 FSSIKEEHEAVRTKAGLFDVSHMGEVEVSGKDALSFLQKMMTNDVADLKPGNALYTAMCY 89
Query: 150 PTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFAD-KVEIQDITKQTCLFVVV 208
P T+D + + L+V + S+I + + + V + + + L V
Sbjct: 90 PDGGTVDDLLIYQKSESCYLLV--INASNIEKDIAWLTEHTEGDVTLTNQSDGISLLAVQ 147
Query: 209 GPKSNQVMRDLNLGDL 224
GP + V+ L DL
Sbjct: 148 GPNAQSVLAKLTECDL 163
>sp|Q2YSZ2|GCST_STAAB Aminomethyltransferase OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=gcvT PE=3 SV=1
Length = 363
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 11/165 (6%)
Query: 60 DLSPPPIDHDLLETVKSEGAKI---SGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIR 116
DL P L + GAKI G + F + E +AA + D+SH G I
Sbjct: 4 DLKQTP----LYQNYVDRGAKIVEFGGWAMPVQFSSIKEEHNAARYEIGLFDVSHMGEIE 59
Query: 117 VSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTID--IAHAWIMKNAVILVVSPL 174
V+G D QF+ + + + L + T ID + + N +++V +
Sbjct: 60 VTGKDASQFVQYLLSNDTDNLTTSKALYTALCNEEGGVIDDLVIYKLADDNYLLVVNAAN 119
Query: 175 TCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDL 219
T +L F VE+Q+++ Q + GPK+ ++ L
Sbjct: 120 TEKDFNWILKHKEKF--DVEVQNVSNQYGQLAIQGPKARDLINQL 162
>sp|Q1INT8|GCST_KORVE Aminomethyltransferase OS=Koribacter versatilis (strain Ellin345)
GN=gcvT PE=3 SV=1
Length = 380
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 75/175 (42%), Gaps = 17/175 (9%)
Query: 64 PPIDHDLLETVKSEGAKISGEGIVETFGND------------GEALDAADNGVAAVDLSH 111
PP++ ++ +T + + SG +V+ G D E L A GV D+SH
Sbjct: 3 PPVEANIRKTALNATHRQSGAKMVDYSGWDMPVEYPSVGGLMKEHL-AVRAGVGLFDVSH 61
Query: 112 FGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTID--IAHAWIMKNAVIL 169
G IRV G + ++ + + + L GQ + + P +D I H + + +++
Sbjct: 62 MGDIRVHGPEALKAVQYLTMNDASKLNTGQAQYSAMLYPNGTFVDDVIVHKFADDDYLLV 121
Query: 170 VVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDL 224
+ + + + + F KV ++D++ Q + GPK ++ L DL
Sbjct: 122 INAGTREKDVNWVKDNTRQF--KVTVEDLSDQFTQIAIQGPKGVDTLQKLTDVDL 174
>sp|Q9WY54|GCST_THEMA Aminomethyltransferase OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=gcvT PE=1 SV=1
Length = 364
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 18/149 (12%)
Query: 95 EALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTART 154
E + A V D+SH G V G + + F+ T +F L +G+ +V
Sbjct: 34 EEVMAVRKSVGMFDVSHMGEFLVKGPEAVSFIDFLITNDFSSLPDGKAIYSVMCNENGGI 93
Query: 155 IDIAHAWIMKNAVILVVSP------LTCSSITEMLNKYVFFADK---VEIQDITKQTCLF 205
ID + V+ VSP + ++I + N ++ K VE+ +I+ T L
Sbjct: 94 ID--------DLVVYKVSPDEALMVVNAANIEKDFN-WIKSHSKNFDVEVSNISDTTALI 144
Query: 206 VVVGPKSNQVMRDLNLGDLVGEAYGTHRH 234
GPK+ + +++L L AY + R
Sbjct: 145 AFQGPKAQETLQELVEDGLEEIAYYSFRK 173
>sp|Q64WS3|GCST_BACFR Aminomethyltransferase OS=Bacteroides fragilis (strain YCH46)
GN=gcvT PE=3 SV=1
Length = 361
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 102 NGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAW 161
NGV D+SH G V G + FL ++ N L G+ T F +D +
Sbjct: 41 NGVGVFDVSHMGEFWVKGPHALDFLQKVTSNNVAALVPGKIQYTCFPNEDGGIVDDLLVY 100
Query: 162 IMKNAVILVVSPLTCSSITEMLNKYVFF-ADKVEIQDITKQTCLFVVVGPKSNQVMR--- 217
+ L+V + S+I + N + + E+++ + V GPK+ Q ++
Sbjct: 101 QYEPEKYLLV--VNASNIEKDWNWCISHNTEGAELENSSDNMAQLAVQGPKAIQALQKLT 158
Query: 218 DLNLGDL 224
D+NL D+
Sbjct: 159 DINLADI 165
>sp|Q5LFT6|GCST_BACFN Aminomethyltransferase OS=Bacteroides fragilis (strain ATCC 25285 /
NCTC 9343) GN=gcvT PE=3 SV=1
Length = 361
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 102 NGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAW 161
NGV D+SH G V G + FL ++ N L G+ T F +D +
Sbjct: 41 NGVGVFDVSHMGEFWVKGPHALDFLQKVTSNNVAALVPGKIQYTCFPNEDGGIVDDLLVY 100
Query: 162 IMKNAVILVVSPLTCSSITEMLNKYVFF-ADKVEIQDITKQTCLFVVVGPKSNQVMR--- 217
+ L+V + S+I + N + + E+++ + V GPK+ Q ++
Sbjct: 101 QYEPEKYLLV--VNASNIEKDWNWCISHNTEGAELENSSDNMAQLAVQGPKAIQALQKLT 158
Query: 218 DLNLGDL 224
D+NL D+
Sbjct: 159 DINLADI 165
>sp|B4S437|GCST_PROA2 Aminomethyltransferase OS=Prosthecochloris aestuarii (strain DSM
271 / SK 413) GN=gcvT PE=3 SV=1
Length = 363
Score = 38.5 bits (88), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 108 DLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAW-IMKNA 166
D+SH G V G FL + ++ + + L +GQ T+ + P +D + I +
Sbjct: 47 DVSHMGNFMVKGRGAKAFLQHMTSNDVDKLSDGQAQYTLLLYPEGGIVDDLIIYRIDADT 106
Query: 167 VILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVM 216
+VV+ L +++ + V++++ T++ L + GP+S +++
Sbjct: 107 WFMVVNASNMEKDYSWLQEHLGSFEGVQLENHTEELSLIALQGPRSMEIL 156
>sp|B7GH71|GCST_ANOFW Aminomethyltransferase OS=Anoxybacillus flavithermus (strain DSM
21510 / WK1) GN=gcvT PE=3 SV=1
Length = 364
Score = 38.5 bits (88), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 108 DLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNA- 166
D+SH G V G D + FL T + L +G+ T+ T+D + K A
Sbjct: 48 DVSHMGEFEVKGKDSVAFLQKMMTNDVAKLTDGRAQYTLMCYEDGGTVD--DLLVYKKAD 105
Query: 167 --VILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDL 224
+LVV+ L+++V VE+ +I+ + GP + +V++ L DL
Sbjct: 106 DHYLLVVNAANIEKDFAWLSEHV--VGDVELVNISNDIAQLALQGPLAEKVLQQLTTVDL 163
>sp|O32955|GCST_MYCLE Aminomethyltransferase OS=Mycobacterium leprae (strain TN) GN=gcvT
PE=3 SV=1
Length = 367
Score = 38.5 bits (88), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 99 AADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTID-- 156
A N V D+SH G+ V G QF+++ T + +R G+ T+ + + ID
Sbjct: 44 ATRNAVGLFDVSHLGKALVRGPGAAQFVNSVLTNDLGRIRPGKAQYTLCCSESGGVIDDL 103
Query: 157 IAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVM 216
IA+ ++ + + LV + +++ + L V + I + + + V GP+S V+
Sbjct: 104 IAY-YVDDDEIFLVSNAANTAAVVDALQAVV--PAGLTIINQHRSHAVLAVQGPRSTDVL 160
Query: 217 RDLNL 221
+L L
Sbjct: 161 GELGL 165
>sp|B8ZQK6|GCST_MYCLB Aminomethyltransferase OS=Mycobacterium leprae (strain Br4923)
GN=gcvT PE=3 SV=1
Length = 367
Score = 38.5 bits (88), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 99 AADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTID-- 156
A N V D+SH G+ V G QF+++ T + +R G+ T+ + + ID
Sbjct: 44 ATRNAVGLFDVSHLGKALVRGPGAAQFVNSVLTNDLGRIRPGKAQYTLCCSESGGVIDDL 103
Query: 157 IAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVM 216
IA+ ++ + + LV + +++ + L V + I + + + V GP+S V+
Sbjct: 104 IAY-YVDDDEIFLVSNAANTAAVVDALQAVV--PAGLTIINQHRSHAVLAVQGPRSTDVL 160
Query: 217 RDLNL 221
+L L
Sbjct: 161 GELGL 165
>sp|A0QEZ6|GCST_MYCA1 Aminomethyltransferase OS=Mycobacterium avium (strain 104) GN=gcvT
PE=3 SV=1
Length = 367
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 98 DAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTID- 156
+A N V D+SH G+ V G +F+++ T + + G+ T+ + ID
Sbjct: 43 NATRNAVGLFDVSHLGKALVRGTGAARFVNSALTNDLNRIGPGKAQYTLCCNESGGVIDD 102
Query: 157 -IAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQV 215
IA+ ++ + + LV + +++ E L V + ++ + + V GP+S V
Sbjct: 103 LIAY-YVDDDEIFLVPNAANTAAVVEALQGAA--PAGVTVSNLHRSYAVLAVQGPRSADV 159
Query: 216 MRDLNL 221
+ +L L
Sbjct: 160 LAELGL 165
>sp|A0PTP8|GCST_MYCUA Aminomethyltransferase OS=Mycobacterium ulcerans (strain Agy99)
GN=gcvT PE=3 SV=1
Length = 367
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 4/145 (2%)
Query: 98 DAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDI 157
+A N D+SH G+ V G +F+++ T + + G+ T+ + ID
Sbjct: 43 NATRNAAGLFDVSHLGKALVRGPGAAEFVNSALTNDLRRIGPGKAQYTLCCNESGGVIDD 102
Query: 158 AHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMR 217
A+ + + I +V P ++ + + I D+ + + V GP+S +V+
Sbjct: 103 LIAYYVADDEIFLV-PNAANTAAVVAALQAAAPSGLTITDLHRSYAVLAVQGPRSTEVLA 161
Query: 218 DLNLG---DLVGEAYGTHRHYSINV 239
L L D +G A ++ S+ V
Sbjct: 162 ALGLPTEMDYMGYADSSYNGVSVRV 186
>sp|Q9UZP8|GCST_PYRAB Probable aminomethyltransferase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=gcvT PE=3 SV=1
Length = 398
Score = 38.1 bits (87), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 14/131 (10%)
Query: 99 AADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIA 158
A N V D+SH G I G D ++FL +T + G T+ + D
Sbjct: 39 AVRNAVGLFDVSHMGEIYFRGKDALKFLQYVTTNDISKPPAISGIYTLVLNERGAIKDET 98
Query: 159 HAWIMKNAVILVVSPLTC-SSITEMLNKYVFFADK---------VEIQDITKQTCLFVVV 208
+ M N L++ C S E L + + K +EI+ T +F V
Sbjct: 99 LIFNMGNNEYLMI----CDSDAFEKLYAWFTYLKKTIEQFTKLDLEIELKTYDIAMFAVQ 154
Query: 209 GPKSNQVMRDL 219
GPK+ + RDL
Sbjct: 155 GPKARDLARDL 165
>sp|Q9YBA2|GCST_AERPE Probable aminomethyltransferase OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=gcvT PE=3 SV=2
Length = 375
Score = 38.1 bits (87), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 7/123 (5%)
Query: 108 DLSHFGRIRVSGDDRIQFLHNQSTANFEILREG-QGCDTVFVTPTARTIDIAHAWIMKNA 166
D+SH GR+ VSG+ + L T + G T+ + AR D + +
Sbjct: 49 DISHMGRMIVSGEGATELLERIYTKRVSKTKVGFMSGPTLALNEYARVKDDEMPYRLGEE 108
Query: 167 VILVVSPLTCSSITEMLNKYVFFADK----VEIQDITKQTCLFVVVGPKSNQVMRDLNLG 222
L+V + ML + A V I+D+ ++ L + GP + +VM ++ G
Sbjct: 109 EWLIVP--NAAVADAMLEYFSSIASSMGLNVSIRDLRERYALLALQGPGAARVMEEMGGG 166
Query: 223 DLV 225
DL+
Sbjct: 167 DLL 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,129,429
Number of Sequences: 539616
Number of extensions: 3455652
Number of successful extensions: 9092
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 8979
Number of HSP's gapped (non-prelim): 158
length of query: 243
length of database: 191,569,459
effective HSP length: 114
effective length of query: 129
effective length of database: 130,053,235
effective search space: 16776867315
effective search space used: 16776867315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)