Query 026126
Match_columns 243
No_of_seqs 237 out of 1782
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 04:05:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2844 Dimethylglycine dehydr 100.0 1.6E-55 3.4E-60 417.7 14.8 226 8-240 393-657 (856)
2 COG0404 GcvT Glycine cleavage 100.0 6.2E-44 1.3E-48 328.4 21.5 179 56-240 2-187 (379)
3 PLN02319 aminomethyltransferas 100.0 2.2E-41 4.7E-46 315.6 22.4 179 55-240 28-215 (404)
4 PRK13579 gcvT glycine cleavage 100.0 5.5E-40 1.2E-44 303.0 22.2 174 55-239 5-183 (370)
5 PRK12486 dmdA putative dimethy 100.0 1E-39 2.2E-44 301.0 20.0 175 57-241 9-188 (368)
6 PRK00389 gcvT glycine cleavage 100.0 1E-37 2.2E-42 286.4 21.8 172 59-237 2-178 (359)
7 TIGR00528 gcvT glycine cleavag 100.0 1.3E-37 2.8E-42 286.2 21.2 173 59-239 1-178 (361)
8 TIGR01372 soxA sarcosine oxida 100.0 2.1E-37 4.5E-42 315.8 22.5 178 57-240 594-789 (985)
9 KOG2770 Aminomethyl transferas 100.0 3.7E-29 8E-34 222.8 13.1 179 55-240 21-211 (401)
10 PF01571 GCV_T: Aminomethyltra 100.0 2.1E-28 4.6E-33 208.2 16.8 129 106-235 1-130 (211)
11 PRK09559 putative global regul 99.9 1.5E-23 3.3E-28 190.7 14.9 126 104-231 19-145 (327)
12 COG0354 Predicted aminomethylt 99.8 3.3E-18 7.2E-23 154.0 11.1 120 98-220 8-127 (305)
13 TIGR01375 soxG sarcosine oxida 99.5 1.2E-13 2.6E-18 112.7 11.3 83 158-241 35-119 (152)
14 KOG2929 Transcription factor, 99.3 3.4E-12 7.4E-17 113.5 7.8 103 105-208 31-146 (348)
15 PF04268 SoxG: Sarcosine oxida 98.2 9.9E-06 2.2E-10 65.8 9.0 101 123-239 10-112 (147)
16 PF04268 SoxG: Sarcosine oxida 98.1 4.7E-05 1E-09 61.9 10.8 83 99-186 59-144 (147)
17 TIGR01375 soxG sarcosine oxida 97.9 0.00011 2.5E-09 59.7 10.4 79 103-186 68-149 (152)
18 COG4583 Sarcosine oxidase gamm 97.5 0.0005 1.1E-08 57.7 8.6 86 96-186 95-183 (189)
19 COG4583 Sarcosine oxidase gamm 97.3 0.0019 4.1E-08 54.3 9.5 79 158-239 71-151 (189)
20 PF10396 TrmE_N: GTP-binding p 95.3 0.07 1.5E-06 41.6 6.7 49 110-161 12-61 (114)
21 COG0486 ThdF Predicted GTPase 93.3 0.18 3.8E-06 48.1 5.9 46 111-157 18-63 (454)
22 PF01571 GCV_T: Aminomethyltra 89.7 1.1 2.4E-05 37.5 6.5 79 100-185 84-166 (211)
23 PRK00389 gcvT glycine cleavage 87.3 4.6 9.9E-05 37.0 9.3 80 101-184 130-213 (359)
24 TIGR00450 mnmE_trmE_thdF tRNA 84.4 2.1 4.6E-05 40.8 5.7 46 111-157 8-53 (442)
25 COG0404 GcvT Glycine cleavage 82.6 6.3 0.00014 37.0 7.9 81 102-186 137-222 (379)
26 PRK05291 trmE tRNA modificatio 81.3 2.3 5E-05 40.6 4.7 45 110-157 17-61 (449)
27 PRK13579 gcvT glycine cleavage 80.2 8.4 0.00018 35.7 7.9 78 102-185 137-217 (370)
28 PRK12486 dmdA putative dimethy 77.0 15 0.00032 34.1 8.5 77 103-185 141-221 (368)
29 TIGR00528 gcvT glycine cleavag 74.2 21 0.00045 32.9 8.7 82 100-185 127-212 (361)
30 PF06978 POP1: Ribonucleases P 72.7 3.5 7.5E-05 34.9 2.9 29 92-120 159-187 (187)
31 PLN02319 aminomethyltransferas 67.7 37 0.0008 31.9 8.9 76 105-185 169-248 (404)
32 KOG2770 Aminomethyl transferas 66.0 17 0.00036 33.8 5.9 89 93-185 149-245 (401)
33 TIGR01372 soxA sarcosine oxida 61.7 35 0.00077 35.9 8.3 78 103-185 738-822 (985)
34 KOG2844 Dimethylglycine dehydr 54.3 96 0.0021 31.7 9.3 91 93-185 597-690 (856)
35 PRK09559 putative global regul 52.0 28 0.00061 31.6 5.1 40 193-233 19-58 (327)
36 PF10396 TrmE_N: GTP-binding p 48.3 57 0.0012 25.3 5.5 25 200-224 12-36 (114)
37 PF11834 DUF3354: Domain of un 47.3 40 0.00086 23.8 4.1 51 113-170 19-69 (69)
38 KOG0688 Peptide chain release 38.8 1.4E+02 0.003 27.8 7.2 89 130-225 80-173 (431)
39 TIGR01352 tonB_Cterm TonB fami 34.0 73 0.0016 21.4 3.8 25 139-163 9-33 (74)
40 COG0386 BtuE Glutathione perox 33.3 2.2E+02 0.0048 23.5 6.9 85 70-155 49-140 (162)
41 PF00673 Ribosomal_L5_C: ribos 32.3 24 0.00052 26.3 1.1 40 114-153 5-44 (95)
42 COG0354 Predicted aminomethylt 29.5 53 0.0011 29.9 3.0 41 192-233 13-53 (305)
43 PF14639 YqgF: Holliday-juncti 25.6 62 0.0013 26.2 2.5 21 140-160 18-38 (150)
44 KOG0397 60S ribosomal protein 24.9 66 0.0014 26.1 2.4 37 205-241 70-117 (176)
45 cd04896 ACT_ACR-like_3 ACT dom 24.9 1.5E+02 0.0032 21.2 4.1 45 114-160 2-48 (75)
46 PF03544 TonB_C: Gram-negative 24.3 1E+02 0.0022 21.0 3.2 40 139-185 15-54 (79)
47 PF13103 TonB_2: TonB C termin 23.0 1.5E+02 0.0033 20.6 4.0 28 138-165 24-51 (85)
48 COG2199 c-di-GMP synthetase (d 22.2 1.9E+02 0.0041 23.0 4.9 55 103-176 53-112 (181)
49 COG0094 RplE Ribosomal protein 21.5 62 0.0013 27.2 1.8 27 113-139 87-113 (180)
No 1
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-55 Score=417.69 Aligned_cols=226 Identities=21% Similarity=0.310 Sum_probs=214.0
Q ss_pred ceeeEEe-ecCCc----cccccccCccCCcchhhccccccccceeeeeCCCC---CCCCCCCCCCCCccchHHHHHHCCC
Q 026126 8 ATTHLIV-GSTSR----LHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPT---AVLPFDLSPPPIDHDLLETVKSEGA 79 (243)
Q Consensus 8 ~~~~~~~-~~~~~----~d~~Rf~~~~~~~~~~~~r~~e~~~~~y~~~~P~~---~~R~~r~sp~~~~~~l~~~~~~~GA 79 (243)
-+||||+ |+|+- +|++||+.++.|+.|+++|++|+|+++|++.||++ +||++|+|| ||++|+++||
T Consensus 393 ~la~wi~~g~p~~d~~~~D~~Rf~~~~~~~~~lr~r~~Es~~~nys~~yp~~e~~agRnlR~sp------ly~~L~~aGa 466 (856)
T KOG2844|consen 393 YLAEWIIHGQPPLDVHELDLRRFGKLQTNRYFLRERAHESYGKNYSVVYPKEEFQAGRNLRMSP------LYDRLESAGA 466 (856)
T ss_pred HHHHHhhcCCCCccchhccHHHhhhhhcccHHHhhhchhhhhcccccccchhhhccccccccCc------cHHHHHhccc
Confidence 3799999 99987 99999999998999999999999999999999995 999999999 9999999999
Q ss_pred eEe---cCCccc------------------------ccCChHHHHHHHhcCcEEEECCCCceEEEeCccHHHHHhhcccc
Q 026126 80 KIS---GEGIVE------------------------TFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTA 132 (243)
Q Consensus 80 ~f~---~~~~p~------------------------~f~~~~~E~~a~R~~vgl~DlS~~~~i~V~G~DA~~fLq~l~t~ 132 (243)
+|+ +||+|. ||+.++.|++|||++|+++|||+|+||.|+|+||.+.||+||++
T Consensus 467 v~~e~~G~ERP~~F~~~~kd~~~~~~~q~~tf~kp~wfd~V~SE~~acrerv~v~DmS~F~Kf~i~G~da~e~ld~LfSa 546 (856)
T KOG2844|consen 467 VFGEKHGWERPGWFYPPGKDDQYLPYGQDSTFRKPEWFDPVGSEYKACRERVGVFDMSSFGKFDITGQDAVELLDYLFSA 546 (856)
T ss_pred chhhhccccCCCccCCCChhhhcccccccccccCCcchhhhHHHHHHHHhhceEeeccccceeeeccHHHHHHHHHHhhc
Confidence 998 477654 55569999999999999999999999999999999999999999
Q ss_pred CcCCCCCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCChHHHHHHHHhcccC-CCCeEEEEecCCEEEEEEECC
Q 026126 133 NFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFF-ADKVEIQDITKQTCLFVVVGP 210 (243)
Q Consensus 133 dv~~l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~~~~~~~~L~~~~~~-~~~V~i~d~t~~~~~l~v~GP 210 (243)
||+. ++|.++||+|||++||++ |+++.|+++++|+|+.++.++.+.+.||++++.. +.+|.|+|+|+++++|+|+||
T Consensus 547 nv~~-~vg~tv~T~mln~~Gg~e~D~tvsrl~~~~f~mia~t~qq~~~~~wi~k~~~~~~~~v~l~DvT~~~~~l~i~GP 625 (856)
T KOG2844|consen 547 NVDV-PVGSTVYTGMLNPKGGYEADCTVSRLSPRGFFMIAGTIQQLHDLSWIKKEMPKGGSNVELKDVTDELGALSIIGP 625 (856)
T ss_pred CCCC-CCCceeeeeeecCCCCeEeeeeeeeecCCceEEEccchhhhhhHHHHHHHhhccCCceeeeechhhhceeeecCc
Confidence 9985 999999999999999999 9999999999999999999999999999999875 358999999999999999999
Q ss_pred cHHHHHhhccCCCCCC--CCCceeEEEEEeee
Q 026126 211 KSNQVMRDLNLGDLVG--EAYGTHRHYSINVF 240 (243)
Q Consensus 211 ~A~~vL~~l~~~dls~--~~~~~~~~~~i~~~ 240 (243)
+||.||++|++.|||+ |||+++|++++|++
T Consensus 626 ~sR~vLqelt~~dls~~~fp~~~~k~l~vg~~ 657 (856)
T KOG2844|consen 626 QSRKVLQELTDADLSDDHFPFLTTKELKVGNA 657 (856)
T ss_pred hHHHHHHhccCCCCCccccCcceeeeeecccc
Confidence 9999999999999998 99999999999865
No 2
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]
Probab=100.00 E-value=6.2e-44 Score=328.38 Aligned_cols=179 Identities=22% Similarity=0.295 Sum_probs=168.1
Q ss_pred CCCCCCCCCCCccchHHHHHHCCCeEe---cCCcccccC-ChHHHHHHHhcCcEEEECCCCceEEEeCccHHHHHhhccc
Q 026126 56 VLPFDLSPPPIDHDLLETVKSEGAKIS---GEGIVETFG-NDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQST 131 (243)
Q Consensus 56 ~R~~r~sp~~~~~~l~~~~~~~GA~f~---~~~~p~~f~-~~~~E~~a~R~~vgl~DlS~~~~i~V~G~DA~~fLq~l~t 131 (243)
.|++|+|| ||++|+++||+|+ +|++|.||. ++.+||.|+|++|||||+|||++++|+||||.+|||++++
T Consensus 2 ~~~~r~tp------l~~~~~~~GA~~~~~~Gw~~p~~y~~~v~~Eh~avR~~aGlfDvShmgk~~V~GpdA~~~L~~l~~ 75 (379)
T COG0404 2 ARPLKRTP------LYDRHKALGAVFGEFGGWEMPVWYAKSVMEEHLAVREAAGLFDVSHMGKVEVSGPDAAAFLQRLLT 75 (379)
T ss_pred Cccccccc------hHHHHHhcCCEEEeeCCEecceecCccHHHHHHHHHhcCceEeccCceEEEEECCCHHHHHHHHcc
Confidence 58999999 9999999999986 699999999 8999999999999999999999999999999999999999
Q ss_pred cCcCCCCCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCChHHHHHHHHhcccC-CCCeEEEEecCCEEEEEEEC
Q 026126 132 ANFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFF-ADKVEIQDITKQTCLFVVVG 209 (243)
Q Consensus 132 ~dv~~l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~~~~~~~~L~~~~~~-~~~V~i~d~t~~~~~l~v~G 209 (243)
||++++++|+++||+|||++|+|+ |.++.|+++|+|+|+++++..+++++||++++.. ..+|+++++|+++++|+|||
T Consensus 76 ndv~kl~~Gr~~Yt~~lne~G~v~dD~~v~rl~~d~f~lv~~a~~~~~~~~~l~~~~~~~~~~v~~~~~t~~~~~lalqG 155 (379)
T COG0404 76 NDVSKLKPGRARYTLMLNEDGGIIDDLIVYRLGEDRFFLVTNAATAEKDLAWLERHQAGPDLDVTLTSVTEDLAVLALQG 155 (379)
T ss_pred cccCcCCCCcEEEeeeECCCCCEEeeEEEEEecCCeEEEEeCccchHHHHHHHHHhhccCCcceEEeeccccEEEEEEEC
Confidence 999999999999999999999999 6688999999999999999999999999985432 35899999999999999999
Q ss_pred CcHHHHHhhccCCCC-CCCCCceeEEEEEeee
Q 026126 210 PKSNQVMRDLNLGDL-VGEAYGTHRHYSINVF 240 (243)
Q Consensus 210 P~A~~vL~~l~~~dl-s~~~~~~~~~~~i~~~ 240 (243)
|+|+++|++++..++ .+||||+++++.|++.
T Consensus 156 PkAr~il~~~~~~~~~~~l~~~~~~~~~i~g~ 187 (379)
T COG0404 156 PKAREVLAKLVDGDLVEALPFFAFKEVTIGGG 187 (379)
T ss_pred cCHHHHHHHhccccccccCCceEEEEEEecCC
Confidence 999999999998884 7799999999998654
No 3
>PLN02319 aminomethyltransferase
Probab=100.00 E-value=2.2e-41 Score=315.64 Aligned_cols=179 Identities=20% Similarity=0.262 Sum_probs=166.0
Q ss_pred CCCCCCCCCCCCccchHHHHHHCCCeEe---cCCcccccC-ChHHHHHHHhcCcEEEECCCCceEEEeCccHHHHHhhcc
Q 026126 55 AVLPFDLSPPPIDHDLLETVKSEGAKIS---GEGIVETFG-NDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQS 130 (243)
Q Consensus 55 ~~R~~r~sp~~~~~~l~~~~~~~GA~f~---~~~~p~~f~-~~~~E~~a~R~~vgl~DlS~~~~i~V~G~DA~~fLq~l~ 130 (243)
..||+|+|| ||++|+++||+|+ +|++|.||+ .+.+||+|||++|+|||+|+|++|+|+|+||.+|||+++
T Consensus 28 ~~r~~r~tp------l~~~~~~~Ga~~~~~~Gwe~p~~y~~~~~~E~~a~R~~~gl~DlS~~~~i~V~G~Da~~fLq~l~ 101 (404)
T PLN02319 28 SEANLKKTA------LYDFHVANGGKMVPFAGWSMPIQYKDSIMDSTLNCRQNGSLFDVSHMCGLSLKGKDAIPFLETLV 101 (404)
T ss_pred CCCCcccCC------cHHHHHHCCCEEEEECCEehhhhcCccHHHHHHHHHhCeEEEECCCcEEEEEECCCHHHHHhhhc
Confidence 779999999 9999999999986 699999997 589999999999999999999999999999999999999
Q ss_pred ccCcCCCCCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCChHHHHHHHHhcccCC----CCeEEEEecCCEEEE
Q 026126 131 TANFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFA----DKVEIQDITKQTCLF 205 (243)
Q Consensus 131 t~dv~~l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~~~~~~~~L~~~~~~~----~~V~i~d~t~~~~~l 205 (243)
||||.++++|+++||++||++|+|+ |.+++|+++|+|||+++++..+.+++||++++... .+|++ ++++++++|
T Consensus 102 t~dv~~l~~G~~~yt~~ln~~G~ii~D~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~-~~~~~~~~l 180 (404)
T PLN02319 102 VADIAGLKDGTGTLSVFTNEKGGIIDDTVITKVTDDHIYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSW-HVHDERSLL 180 (404)
T ss_pred ccccCCCCCCCEEEeEEECCCCeEEEEEEEEEEcCCEEEEEECCccHHHHHHHHHhhhhhccCCCCcEEE-EEcCCeEEE
Confidence 9999999999999999999999999 56888888999999999999999999999987531 25776 578999999
Q ss_pred EEECCcHHHHHhhccCCCCCCCCCceeEEEEEeee
Q 026126 206 VVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSINVF 240 (243)
Q Consensus 206 ~v~GP~A~~vL~~l~~~dls~~~~~~~~~~~i~~~ 240 (243)
+||||+|+++|+++++.|++++||++++.+++++.
T Consensus 181 ~lqGP~s~~~l~~l~~~~l~~~~f~~~~~~~i~g~ 215 (404)
T PLN02319 181 ALQGPLAAPVLQHLTKEDLSKMYFGDFRITDINGA 215 (404)
T ss_pred EEECccHHHHHHHhcccchhhCCCceEEEEEECCe
Confidence 99999999999999988999999999999988653
No 4
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional
Probab=100.00 E-value=5.5e-40 Score=302.97 Aligned_cols=174 Identities=20% Similarity=0.275 Sum_probs=161.8
Q ss_pred CCCCCCCCCCCCccchHHHHHHCCCeEe---cCCcccccC-ChHHHHHHHhcCcEEEECCCCceEEEeCccHHHHHhhcc
Q 026126 55 AVLPFDLSPPPIDHDLLETVKSEGAKIS---GEGIVETFG-NDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQS 130 (243)
Q Consensus 55 ~~R~~r~sp~~~~~~l~~~~~~~GA~f~---~~~~p~~f~-~~~~E~~a~R~~vgl~DlS~~~~i~V~G~DA~~fLq~l~ 130 (243)
.+||+|+|| ||++|+++||+|+ +|++|.||+ ++.+||+|+|++|+++|+|++++|+|+|+||.+|||+++
T Consensus 5 ~~~~~r~~p------l~~~~~~~ga~~~~~~g~e~p~~f~~~~~~E~~avr~~a~l~Dls~~~~i~v~G~Da~~fLq~~~ 78 (370)
T PRK13579 5 DTSPLKTLP------LHALHLAAGARMVPFAGYDMPVQYPAGVLKEHLHTRAHAGLFDVSHMGQIEVSGKDAAAALERLV 78 (370)
T ss_pred CCCccccCc------cHHHHHHCCCEEEEECCeecccccCccHHHHHHHHHhccEEEECCCcEEEEEECCCHHHHHHHhc
Confidence 479999999 9999999999986 699999997 799999999999999999999999999999999999999
Q ss_pred ccCcCCCCCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCCEEEEEEEC
Q 026126 131 TANFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVG 209 (243)
Q Consensus 131 t~dv~~l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~G 209 (243)
||||.++++|+++|+++||++|+|+ |.+++|+ +|+|||+++++..+.+++||++++. .+|+|+|++ ++++++|+|
T Consensus 79 tndi~~l~~g~~~y~~~ln~~G~i~~d~~v~r~-~d~~~L~~~~~~~~~~~~~l~~~~~--~~V~i~d~~-~~~~l~l~G 154 (370)
T PRK13579 79 PVDILALKEGRQRYTFFTNEQGGILDDLMVTNL-GDHLFLVVNAACKDADIAHLREHLS--DECEVNPLD-DRALLALQG 154 (370)
T ss_pred cccCCCCCCCCEEEeEEECCCCeEEEeEEEEEE-CCeEEEEECcCCHHHHHHHHHHhCC--CCcEEEECC-CcEEEEEEC
Confidence 9999999999999999999999999 5577777 7899999999999999999999885 389999986 689999999
Q ss_pred CcHHHHHhhccCCCCCCCCCceeEEEEEee
Q 026126 210 PKSNQVMRDLNLGDLVGEAYGTHRHYSINV 239 (243)
Q Consensus 210 P~A~~vL~~l~~~dls~~~~~~~~~~~i~~ 239 (243)
|+|+++|++++ .+++++||++++.+.+++
T Consensus 155 P~a~~il~~l~-~~~~~~~~~~~~~~~~~g 183 (370)
T PRK13579 155 PEAEAVLADLG-PPVAALRFMDGFEPRLHG 183 (370)
T ss_pred cCHHHHHHHhh-hhhhcCCCceEEEEEECC
Confidence 99999999997 578889999999888854
No 5
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed
Probab=100.00 E-value=1e-39 Score=301.03 Aligned_cols=175 Identities=11% Similarity=0.139 Sum_probs=157.8
Q ss_pred CCCCCCCCCCccchHHHHHHCCCeEe----cCCcccccCChHHHHHHHhcCcEEEECCCCceEEEeCccHHHHHhhcccc
Q 026126 57 LPFDLSPPPIDHDLLETVKSEGAKIS----GEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTA 132 (243)
Q Consensus 57 R~~r~sp~~~~~~l~~~~~~~GA~f~----~~~~p~~f~~~~~E~~a~R~~vgl~DlS~~~~i~V~G~DA~~fLq~l~t~ 132 (243)
+.+|+|| ||++|+++||+|. +|.+|.||.++.+||+|+|++|+|||+|+|++|+|+|+||.+|||+++||
T Consensus 9 ~~~~~t~------l~~~h~~~ga~~~~~~~g~~~p~~~~~~~~E~~A~R~~~gl~D~S~~~~i~V~G~Da~~fL~~l~t~ 82 (368)
T PRK12486 9 RRLRRTP------FSDGVEAAGVKAYTVYNHMLLPTVFESVEDDYAHLKEHVQVWDVAVERQVEIRGPDAARLVQMLTPR 82 (368)
T ss_pred ccccCCC------CHHHHHHCCCeEEecCCCeECccccCCHHHHHHHHHhcceEEEcCCcEEEEEECCCHHHHHHHhccc
Confidence 3478898 9999999999943 68899999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCCEEEEEEECCc
Q 026126 133 NFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPK 211 (243)
Q Consensus 133 dv~~l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~ 211 (243)
||+++++|+++||++||++|+|+ |.+++|+++|+|||+++.+ ....||++++.. .++.+++.++++++|+||||+
T Consensus 83 di~~l~~G~~~yt~~ln~~G~i~~D~~v~r~~ed~~~l~~~~~---~~~~~l~~~~~~-~~~~v~~~~~~~~~l~lqGP~ 158 (368)
T PRK12486 83 DLRGMKPGQCYYVPIVDETGGMLNDPVALKLAEDRWWISIADS---DLLLWVKGLANG-RKLDVLVVEPDVSPLAVQGPK 158 (368)
T ss_pred ccccCCCCcEEEEEEEcCCCcEEeeEEEEEecCCEEEEEEcCc---cHHHHHHHhhhh-cCCcEEEecCCeEEEEeECcC
Confidence 99999999999999999999999 6689999999999988755 457888887653 346666677889999999999
Q ss_pred HHHHHhhccCCCCCCCCCceeEEEEEeeee
Q 026126 212 SNQVMRDLNLGDLVGEAYGTHRHYSINVFT 241 (243)
Q Consensus 212 A~~vL~~l~~~dls~~~~~~~~~~~i~~~~ 241 (243)
|+++|+++++.+++++||++++.++|++.+
T Consensus 159 s~~il~~l~~~~l~~~~~~~~~~~~i~g~~ 188 (368)
T PRK12486 159 ADALMARVFGEAIRDLRFFRFGYFDFEGTD 188 (368)
T ss_pred HHHHHHHHhcCChhhCCCceeEEEEECCcE
Confidence 999999999889999999999999987654
No 6
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed
Probab=100.00 E-value=1e-37 Score=286.38 Aligned_cols=172 Identities=21% Similarity=0.289 Sum_probs=161.5
Q ss_pred CCCCCCCCccchHHHHHHCCCeEe---cCCcccccCChHHHHHHHhcCcEEEECCCCceEEEeCccHHHHHhhccccCcC
Q 026126 59 FDLSPPPIDHDLLETVKSEGAKIS---GEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFE 135 (243)
Q Consensus 59 ~r~sp~~~~~~l~~~~~~~GA~f~---~~~~p~~f~~~~~E~~a~R~~vgl~DlS~~~~i~V~G~DA~~fLq~l~t~dv~ 135 (243)
+|+|| ||++|.++||+|+ +|++|.||+++.+||+|+|++|+|+|+|++++|+|+|+||.+|||+++||||+
T Consensus 2 ~r~s~------l~~~~~~~ga~f~~~~g~~~p~~~~~~~~E~~a~r~~~~l~dls~~~~i~v~G~Da~~fLq~~~t~dv~ 75 (359)
T PRK00389 2 LKRTP------LYDLHVALGAKMVDFGGWEMPVQYGSIIEEHHAVRTDAGLFDVSHMGEVDVTGPDALAFLQYLLANDVS 75 (359)
T ss_pred CcCCc------cHHHHHHcCCEEEeECCeecchhccCHHHHHHHHHhCceEEECCCcEEEEEECCCHHHHHhhhcccccc
Confidence 58888 9999999999997 58899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCCEEEEEEECCcHHH
Q 026126 136 ILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQ 214 (243)
Q Consensus 136 ~l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~A~~ 214 (243)
++++|++.|+++||++|+|+ |.+++|+++|+|+|+++++..+.+++||++|+.+ .+|+|+|+++++++++|+||+|++
T Consensus 76 ~l~~g~~~~~~~l~~~G~i~~d~~v~r~~~~~~ll~~~~~~~~~~~~~L~~~~~~-~~V~i~d~~~~~~~l~l~GP~a~~ 154 (359)
T PRK00389 76 KLKPGKAQYTCMLNEDGGVIDDLIVYKLSEDEYLLVVNAANREKDLAWIKSHAAG-FGVEVTDRSDDLAMIAVQGPKARE 154 (359)
T ss_pred cCCCCcEEEeEEECCCCCEEEeEEEEEecCCEEEEEECcccHHHHHHHHHhhCcc-CCEEEEECCCCEEEEEEECccHHH
Confidence 99999999999999999999 6688888899999999999999999999999874 489999999999999999999999
Q ss_pred HHhhccCCCCCCC-CCceeEEEEE
Q 026126 215 VMRDLNLGDLVGE-AYGTHRHYSI 237 (243)
Q Consensus 215 vL~~l~~~dls~~-~~~~~~~~~i 237 (243)
+|++++..+++++ ||..++.+.+
T Consensus 155 ~l~~~~~~~l~~~~~~~~~~~~~~ 178 (359)
T PRK00389 155 KLQKLTDADLSELKPFFGAQGAEV 178 (359)
T ss_pred HHHHhcccchhhccccceeeEEEE
Confidence 9999998888888 7888776655
No 7
>TIGR00528 gcvT glycine cleavage system T protein. Eukaryotic forms are mitochondrial and have an N-terminal transit peptide.
Probab=100.00 E-value=1.3e-37 Score=286.21 Aligned_cols=173 Identities=18% Similarity=0.271 Sum_probs=159.1
Q ss_pred CCCCCCCCccchHHHHHHCCCeEe---cCCcccccCChHHHHHHHhcCcEEEECCCCceEEEeCccHHHHHhhccccCcC
Q 026126 59 FDLSPPPIDHDLLETVKSEGAKIS---GEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFE 135 (243)
Q Consensus 59 ~r~sp~~~~~~l~~~~~~~GA~f~---~~~~p~~f~~~~~E~~a~R~~vgl~DlS~~~~i~V~G~DA~~fLq~l~t~dv~ 135 (243)
+|+|| ||++|.++||+|+ +|++|.+|++..+||+|+|++|+++|+|++++|+|+|+||.+|||+|+||||.
T Consensus 1 ~r~sp------l~~~~~~~ga~~~~~~g~~~p~~y~~~~~E~~a~r~~~~l~dls~~~~i~vsG~Da~~fLq~~~t~di~ 74 (361)
T TIGR00528 1 LKRTP------LYDLHTECGGKMVDFGGWEMPVQYGSQIDEHHAVRTDAGLFDVSHMGIVDLSGSRSLEFLQRLLPNDVA 74 (361)
T ss_pred CCCCc------chHHHHHCCCEEEEECCchhhhccCChHHHHHHHHhhCcEEECCCcEEEEEECCCHHHHHhHhcccccc
Confidence 47888 9999999999996 58899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCCEEEEEEECCcHHH
Q 026126 136 ILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQ 214 (243)
Q Consensus 136 ~l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~A~~ 214 (243)
.+++|++.||++||++|+|+ |.+++|+++|+|||+++++..+.+++||++++. .+|+|+|+++++++|+|+||+|++
T Consensus 75 ~l~~g~~~~~~~l~~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~--~~v~i~~~t~~~~~l~l~GP~a~~ 152 (361)
T TIGR00528 75 ALTPGKAQYSVLLNPQGGVVDDLIIYYFGEDRFRLVVNAATREKDLSWITEHAE--PFGIEDTQSDDISLLAVQGPKAAT 152 (361)
T ss_pred cCCCCCEEEEEEECCCCeEEEEEEEEEecCCEEEEEECCccHHHHHHHHHHhCc--CCcEEEECcCCEEEEEeECcCHHH
Confidence 99999999999999999999 567788889999999999999999999999965 379999999999999999999999
Q ss_pred HHhhccCCCCCC-CCCceeEEEEEee
Q 026126 215 VMRDLNLGDLVG-EAYGTHRHYSINV 239 (243)
Q Consensus 215 vL~~l~~~dls~-~~~~~~~~~~i~~ 239 (243)
+|++++..++++ +||+..+..++++
T Consensus 153 ~l~~l~~~~~~~~~~~~~~~~~~~~g 178 (361)
T TIGR00528 153 ILNPLQDQAVEGLKPFFFVQEADFSG 178 (361)
T ss_pred HHHHhcccchhhcccccceeEEEECC
Confidence 999999888877 4455566766654
No 8
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=100.00 E-value=2.1e-37 Score=315.81 Aligned_cols=178 Identities=18% Similarity=0.219 Sum_probs=164.3
Q ss_pred CCCCCCCCCCccchHHHHHHCCCeEe---cCCcccccC--------ChHHHHHHHhcCcEEEECCCCceEEEeCccHHHH
Q 026126 57 LPFDLSPPPIDHDLLETVKSEGAKIS---GEGIVETFG--------NDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQF 125 (243)
Q Consensus 57 R~~r~sp~~~~~~l~~~~~~~GA~f~---~~~~p~~f~--------~~~~E~~a~R~~vgl~DlS~~~~i~V~G~DA~~f 125 (243)
+|+|+|| ||++|+++||+|+ +|++|.||. .+.+||+|+|++|||||+|++++|+|+|+||.+|
T Consensus 594 ~~~r~tp------l~~~~~~~GA~~~~~~gw~~p~~y~~~~~~~~~~~~~E~~avR~~vgl~D~S~~g~i~V~G~DA~~f 667 (985)
T TIGR01372 594 DPARKTP------LHSWHLAHGAVFEDVGQWKRPWYYPRRGEDMDEAVARECKAVRESVGLFDASTLGKIEVQGPDAAEF 667 (985)
T ss_pred cccccCc------cHHHHHHcCCEeeeeCCccchhhhcCCCCcccchHHHHHHHHHhceEEEECCCcEEEEEECcCHHHH
Confidence 3788998 9999999999986 699999996 5799999999999999999999999999999999
Q ss_pred HhhccccCcCCCCCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCChHHHHHHHHhcccC---CCCeEEEEecCC
Q 026126 126 LHNQSTANFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFF---ADKVEIQDITKQ 201 (243)
Q Consensus 126 Lq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~~~~~~~~L~~~~~~---~~~V~i~d~t~~ 201 (243)
||+++||||.++++|+++||+|||++|+|+ |.+++|+++|+|||+++++..+.+++||++++.. ..+|+|+|+|++
T Consensus 668 L~~~~tndi~~l~~G~~~yt~~l~~~G~i~dD~~v~r~~ed~~~l~~~~~~~~~~~~~L~~~~~~~~~~~~V~i~d~t~~ 747 (985)
T TIGR01372 668 LNRVYTNAFTKLKVGKARYGLMLREDGMVFDDGVTSRLAEDRFLMTTTTGGAARVLQHLEEWLQTEWPELDVYLTSVTDQ 747 (985)
T ss_pred HhhhcccccCcCCCCCEEEeEEECCCCeEEEeEEEEEEeCCEEEEEeCCcCHHHHHHHHHHhhhhccCCCCEEEEECCCC
Confidence 999999999999999999999999999999 5688899999999999999999999999999741 237999999999
Q ss_pred EEEEEEECCcHHHHHhhccC-CCCCC--CCCceeEEEEEeee
Q 026126 202 TCLFVVVGPKSNQVMRDLNL-GDLVG--EAYGTHRHYSINVF 240 (243)
Q Consensus 202 ~~~l~v~GP~A~~vL~~l~~-~dls~--~~~~~~~~~~i~~~ 240 (243)
+++|+|+||+|+++|++++. .|+++ |||++++++.+++.
T Consensus 748 ~a~i~l~GP~s~~vl~~l~~~~dl~~~~~~~~~~~~~~~~g~ 789 (985)
T TIGR01372 748 WATLAVSGPKARDLLAELVDGLDLSNEAFPFMAIKEGTLAGV 789 (985)
T ss_pred EEEEEEECHhHHHHHHHhcCcccCccccCCCceeEEEEECCc
Confidence 99999999999999999986 67754 99999999998653
No 9
>KOG2770 consensus Aminomethyl transferase [Amino acid transport and metabolism]
Probab=99.96 E-value=3.7e-29 Score=222.76 Aligned_cols=179 Identities=26% Similarity=0.358 Sum_probs=157.7
Q ss_pred CCCCCCCCCCCCccchHHHHHHCCCeE---ecCCcccccCC--hHHHHHHHhcCcEEEECCCCceEEEeCccHHHHHhhc
Q 026126 55 AVLPFDLSPPPIDHDLLETVKSEGAKI---SGEGIVETFGN--DGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQ 129 (243)
Q Consensus 55 ~~R~~r~sp~~~~~~l~~~~~~~GA~f---~~~~~p~~f~~--~~~E~~a~R~~vgl~DlS~~~~i~V~G~DA~~fLq~l 129 (243)
+.-.+++|| ||+.|.++|+.+ ++|.+|..|.+ +.++|..+|++++|||+|||..++|+|+|+.+||+.+
T Consensus 21 ~s~~~~~T~------l~d~H~~~ggk~V~fag~smpvqy~d~s~~dshl~tr~n~~lfDVSHmlq~~v~G~d~v~fLes~ 94 (401)
T KOG2770|consen 21 ASSELKRTP------LYDFHVKLGGKMVPFAGYSMPVQYKDQSIIDSHLHTRENVSLFDVSHMLQSRVSGKDRVAFLESL 94 (401)
T ss_pred hhhhcccCC------ChhhHhhcCCEEecccccccceeeccccchhhhhhhhhcceEEeehhheeeeecccchhHHhhhc
Confidence 334667788 999999999986 57999999984 8999999999999999999999999999999999999
Q ss_pred cccCcCCCCCCceEEeEeecCCCcEEEE-EEEEEeCCEEEEEECCCChHHHHHHHHhcccC----CCCeEEEEecCCEEE
Q 026126 130 STANFEILREGQGCDTVFVTPTARTIDI-AHAWIMKNAVILVVSPLTCSSITEMLNKYVFF----ADKVEIQDITKQTCL 204 (243)
Q Consensus 130 ~t~dv~~l~~G~~~yt~~Ln~~G~i~d~-~v~~~~~d~f~l~~~~~~~~~~~~~L~~~~~~----~~~V~i~d~t~~~~~ 204 (243)
++.|+..|++|+.+.|.|+||+||++|+ ++....++++|++++++.++.+..+++.++.. ..||+++-+. ..+.
T Consensus 95 ttad~~~L~~g~GtlsvFtne~ggiiDd~ii~k~~~~~ly~VsnAgC~ekd~~~~k~~~~a~ks~gkDv~~~~~~-~r~l 173 (401)
T KOG2770|consen 95 TTADFEGLPEGSGTLSVFTNETGGIIDDLIITKVDENELYIVSNAGCQEKDEALLKDHFFAWKSKGKDVSWETLD-GRSL 173 (401)
T ss_pred cccchhccCCCCceeEEEEcCCCceeeeeEEEeecCCEEEEEeccchHHHHHHHHHHHHHhhhhccceeeEEEec-ccch
Confidence 9999999999999999999999999966 55667889999999999999999999887652 1245554443 5588
Q ss_pred EEEECCcHHHHHhhccC--CCCCCCCCceeEEEEEeee
Q 026126 205 FVVVGPKSNQVMRDLNL--GDLVGEAYGTHRHYSINVF 240 (243)
Q Consensus 205 l~v~GP~A~~vL~~l~~--~dls~~~~~~~~~~~i~~~ 240 (243)
+++|||.+..+|+++.. .||+.+||++++..++.+.
T Consensus 174 ~A~Qgp~~akvlq~l~~k~~DL~~l~fg~~~~~~~~G~ 211 (401)
T KOG2770|consen 174 LALQGPEAAKVLQKLLSKLGDLSKLPFGQSQVYDFKGG 211 (401)
T ss_pred hhhcChHHHHHHHHhhccccchhcccccceEEEEecCC
Confidence 99999999999999988 8999999999999988543
No 10
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase 2.1.2.10 from EC that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein ; GO: 0004047 aminomethyltransferase activity, 0006546 glycine catabolic process, 0005737 cytoplasm; PDB: 3TFJ_B 3TFI_B 3TFH_A 1YX2_B 3GIR_A 3A8K_D 3A8I_B 3A8J_C 1VLO_A 1WOO_A ....
Probab=99.96 E-value=2.1e-28 Score=208.24 Aligned_cols=129 Identities=30% Similarity=0.473 Sum_probs=117.4
Q ss_pred EEECCCCceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCChHHHHHHHH
Q 026126 106 AVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLN 184 (243)
Q Consensus 106 l~DlS~~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~~~~~~~~L~ 184 (243)
|||+|++++|+|+|+||.+|||+++||||.++++|+++||++||+||+|+ |.++++..+++|+|+++++..+.+++||+
T Consensus 1 l~d~s~~~~i~v~G~Da~~fLq~~~t~di~~l~~g~~~~~~~l~~~G~v~~d~~v~~~~~~~~~l~~~~~~~~~~~~~L~ 80 (211)
T PF01571_consen 1 LFDLSHRGVIRVSGPDAAKFLQGLLTNDISKLPPGQARYTLFLNPKGRVLDDFFVYRLGDDEFLLIVPASAADALLEWLK 80 (211)
T ss_dssp EEE-TTSEEEEEESTTHHHHHHHHBSS-GTTS-TTBEEEEEEE-TTS-EEEEEEEEEEETTEEEEEECCTCHHHHHHHHH
T ss_pred CCCCCCcEEEEEECCCHHHHHHHhhhhhHHhhCCCceeEEEEECCCCcEEEEEEEEeecCceEEEEecchhHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999 67889999999999999999999999999
Q ss_pred hcccCCCCeEEEEecCCEEEEEEECCcHHHHHhhccCCCCCCCCCceeEEE
Q 026126 185 KYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHY 235 (243)
Q Consensus 185 ~~~~~~~~V~i~d~t~~~~~l~v~GP~A~~vL~~l~~~dls~~~~~~~~~~ 235 (243)
+|+.+ .+|+|+++++++++++|+||+|.++|+++.+.+++++++++++.+
T Consensus 81 ~~~~~-~~v~i~~~~~~~~~~~l~Gp~a~~~l~~~~~~~~~~~~~~~~~~~ 130 (211)
T PF01571_consen 81 KYILR-SDVEIEDVSDDLAVLGLQGPKAAEVLQKLFDEDIEPLPFFSSREV 130 (211)
T ss_dssp HHHHH-SS-EEEEETTTEEEEEEESTTHHHHHHHHSSSSGTTSHTTBEEEE
T ss_pred Hhccc-cCcEEEEcccceeEEEEEcchhhHHHHHhcccccccccccceeee
Confidence 99875 589999999999999999999999999999888888999999877
No 11
>PRK09559 putative global regulator; Reviewed
Probab=99.91 E-value=1.5e-23 Score=190.70 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=110.6
Q ss_pred cEEEECCCCceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEEEEEEEEEeCCEEEEEECCCChHHHHHHH
Q 026126 104 VAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEML 183 (243)
Q Consensus 104 vgl~DlS~~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~~v~~~~~d~f~l~~~~~~~~~~~~~L 183 (243)
..++|+|++|+|+|+|+||.+|||+|+||||.++++|+++|+++||+||||+++++++..+++|+|+++++..+.+++||
T Consensus 19 ~~l~~L~~~g~i~v~G~Da~~FLqg~~T~Dv~~L~~g~~~y~~~~n~kGril~d~~v~~~~~~~~l~~~~~~~~~~~~~L 98 (327)
T PRK09559 19 LTLISLDDWALATITGADSEKYLQGQVTADVSQLTEDQHLLAAHCDAKGKMWSNLRLFRRGDGFAWIERRSVRENQLTEL 98 (327)
T ss_pred eEEEcCccceEEEEECCcHHHHhcccccccccccCCCCeeEEEEECCCCcEEEEEEEEEeCCeEEEEeChhhhHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999997666555667799999999999999999
Q ss_pred HhcccCCCCeEEEEecCCEEEEEEECCcHHHHHhhccC-CCCCCCCCce
Q 026126 184 NKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNL-GDLVGEAYGT 231 (243)
Q Consensus 184 ~~~~~~~~~V~i~d~t~~~~~l~v~GP~A~~vL~~l~~-~dls~~~~~~ 231 (243)
++|+.+. +|+|++ +++++.++++||+|.++|++++. .+....+++.
T Consensus 99 ~ky~~~~-kV~i~~-~~~~~~i~l~Gp~a~~~l~~~~~~~~~~~~~~~~ 145 (327)
T PRK09559 99 KKYAVFS-KVTIAP-DDERVLLGVAGFQARAALANLFSELPDAEKPVVQ 145 (327)
T ss_pred hhcccce-EEEEEe-CCcEEEEEEECccHHHHHHHhcccCCCcCcceEe
Confidence 9998864 899986 67799999999999999999864 2333345444
No 12
>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only]
Probab=99.76 E-value=3.3e-18 Score=153.97 Aligned_cols=120 Identities=26% Similarity=0.287 Sum_probs=107.5
Q ss_pred HHHhcCcEEEECCCCceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEEEEEEEEEeCCEEEEEECCCChH
Q 026126 98 DAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCS 177 (243)
Q Consensus 98 ~a~R~~vgl~DlS~~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~~v~~~~~d~f~l~~~~~~~~ 177 (243)
........++++++++.|+|+|+|+.+|||+|+||||..+..|+.+++.+||+||||++++.++..+|.|+|.++++..+
T Consensus 8 ~~~~~~~~l~~l~~~~li~V~G~D~~kfLq~q~T~dv~~l~~g~~~~~a~l~~qGrv~~~~~~~~~~d~~~l~~~~~~~~ 87 (305)
T COG0354 8 PSAETPLTLVLLSDRALIRVSGADAEKFLQGQLTNDVSALAEGQSTLAALLTPQGRVLFDFRLYRRGDGLYLDTDKSVLE 87 (305)
T ss_pred cccccccEEEecCCceeEEEECCCHHHHHhHHHHHhHhhcccCceeeeeEECCCceEEEEEEEEEeCCeEEEEcchhhcH
Confidence 34456778999999999999999999999999999999999999999999999999997666666669999999999999
Q ss_pred HHHHHHHhcccCCCCeEEEEecCCEEEEEEECCcHHHHHhhcc
Q 026126 178 SITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLN 220 (243)
Q Consensus 178 ~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~A~~vL~~l~ 220 (243)
..++||++|++++ +|+|.+.+ ...+++.|+++.+.+....
T Consensus 88 ~~l~~L~kY~~~s-kv~i~~~~--~~~i~v~~~~~~~~~~~~~ 127 (305)
T COG0354 88 ALLKRLKKYALRS-KVTIAPSD--LVLIGVAGEEAAEALAVDF 127 (305)
T ss_pred HHHHHHHhceecc-cceEecCC--ceeEEEeeccccchhhccc
Confidence 9999999999986 89998765 7999999999988776543
No 13
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.52 E-value=1.2e-13 Score=112.73 Aligned_cols=83 Identities=12% Similarity=0.157 Sum_probs=76.3
Q ss_pred EEEEEeCCEEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCCEEEEEEECCcHHHHHhhccCCCCCC--CCCceeEEE
Q 026126 158 AHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVG--EAYGTHRHY 235 (243)
Q Consensus 158 ~v~~~~~d~f~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~A~~vL~~l~~~dls~--~~~~~~~~~ 235 (243)
+++|+++|+|+|+++++..+.+.+||++++.. .+|.|+|+|+++++|+||||+|+++|+++++.|+++ |||++++++
T Consensus 35 ~v~rlg~d~~llv~~~~~~~~~~~~l~~~~~~-~~v~v~d~s~~~~~l~lqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~ 113 (152)
T TIGR01375 35 SVLWLGPDEWLIIAPQPEGAVLMAALAAALGP-EPHAVVDLSGGRTALRISGPMAEEVLAKGCAVDLSLSAFPVGAGRRT 113 (152)
T ss_pred EEEEEcCCEEEEEcCccchHHHHHHHHHHhCC-CccEEEEecCCEEEEEEEChhHHHHHHhcCCCCCCcccCCCCcEEEE
Confidence 68999999999999999999999999998752 259999999999999999999999999999999998 999999999
Q ss_pred EEeeee
Q 026126 236 SINVFT 241 (243)
Q Consensus 236 ~i~~~~ 241 (243)
.+++.+
T Consensus 114 ~i~~~~ 119 (152)
T TIGR01375 114 IFGKIA 119 (152)
T ss_pred EEcCeE
Confidence 987654
No 14
>KOG2929 consensus Transcription factor, component of CCR4 transcriptional complex [Transcription]
Probab=99.32 E-value=3.4e-12 Score=113.51 Aligned_cols=103 Identities=21% Similarity=0.224 Sum_probs=87.0
Q ss_pred EEEECCCCceEEEeCccHHHHHhhccccCcCC--------CCCCceEEeEeecCCCcEE-EEEEEEEeCC----EEEEEE
Q 026126 105 AAVDLSHFGRIRVSGDDRIQFLHNQSTANFEI--------LREGQGCDTVFVTPTARTI-DIAHAWIMKN----AVILVV 171 (243)
Q Consensus 105 gl~DlS~~~~i~V~G~DA~~fLq~l~t~dv~~--------l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d----~f~l~~ 171 (243)
.++-++++..|+|+|||+.+|||+|+||||.. .......|++|||.+||++ |.++.+...+ +++|-+
T Consensus 31 ~~~~L~~RsliRv~GpDtvkFLqGL~TNdv~~~~p~~~~a~~t~~~~Ya~fLN~qGR~LyD~iLY~~~~~~~~~~~llE~ 110 (348)
T KOG2929|consen 31 NLSLLESRSLIRVRGPDTVKFLQGLLTNDVTRHFPGIQGAPITRNGLYAAFLNTQGRLLYDTILYPTPVPVSEPELLLEC 110 (348)
T ss_pred eeeecCCceEEEEeCccHHHHHhhhhcccccccCcccccCCCCCchhhhhhhccCccEEEEEEEecCCCCCCCCceEEEe
Confidence 56788999999999999999999999999985 1123578999999999999 7777776655 999999
Q ss_pred CCCChHHHHHHHHhcccCCCCeEEEEecCCEEEEEEE
Q 026126 172 SPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVV 208 (243)
Q Consensus 172 ~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~ 208 (243)
.......+..+|.+|..+. +|+|+.+.+++-.+.+.
T Consensus 111 d~~~~~~~~khl~~yrLr~-kv~v~~id~el~tw~v~ 146 (348)
T KOG2929|consen 111 DGSVVGDFLKHLQKYRLRR-KVEVEKIDHELKTWKVE 146 (348)
T ss_pred cCccchHHHHHHHHhhhhh-cceeeeCchhhceeeee
Confidence 9999999999999998764 89998887665555554
No 15
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+. This enzyme catalyzes the oxidative demethylation of sarcosine to yield glycine, H2O2, and 5,10-CH2-tetrahydrofolate (H4folate) in a reaction requiring H4folate and O2 [, ].; PDB: 2GAH_C 3ADA_C 1VRQ_C 3AD8_C 3AD9_C 3AD7_C 1X31_C.
Probab=98.20 E-value=9.9e-06 Score=65.85 Aligned_cols=101 Identities=14% Similarity=0.135 Sum_probs=63.7
Q ss_pred HHHHhhccccCcCCCCCCceEEeEeecCCCcEEEEEEEEEeCCEEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCCE
Q 026126 123 IQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQT 202 (243)
Q Consensus 123 ~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~~v~~~~~d~f~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~ 202 (243)
..-++..+.-.++. +++... .. + .++|+++|+++|+.+ ....+.+-|...+. + ...+.|+|+.+
T Consensus 10 ~aa~~~a~G~~lP~-~~~~~~------~~----~-~~~wlgPdewLl~~~--~~~~~~~~l~~~l~-~-~a~v~d~Sd~~ 73 (147)
T PF04268_consen 10 AAALAAALGVALPA-APNSVA------AG----G-AVLWLGPDEWLLLSP--DGEDLAAALAAALG-G-HASVVDVSDGR 73 (147)
T ss_dssp HHHHHHHCSS-----STCEEE------E-----T-EEEEEETTEEEEEES--S-TCHHHHHHHHHT-T-SSEEEE-TTTB
T ss_pred HHHHHHHhCCCCCC-ccceec------cC----C-eEEEEcCCEEEEEec--CcchHHHHHHHhhC-C-CeEEEecCCce
Confidence 44555555666663 444331 11 1 689999999999883 23344666666543 2 57899999999
Q ss_pred EEEEEECCcHHHHHhhccCCCCCC--CCCceeEEEEEee
Q 026126 203 CLFVVVGPKSNQVMRDLNLGDLVG--EAYGTHRHYSINV 239 (243)
Q Consensus 203 ~~l~v~GP~A~~vL~~l~~~dls~--~~~~~~~~~~i~~ 239 (243)
+.|.|.||+++++|++.+..|++. ||...+....++.
T Consensus 74 ~~~~lsG~~a~~vLak~~~iDl~~~af~~G~~a~T~~~~ 112 (147)
T PF04268_consen 74 VWFRLSGPAARDVLAKGCPIDLHPSAFPPGRAARTSFAH 112 (147)
T ss_dssp --EEEESTTHHHHHTTT--S--STTTS-TTEEEEEEETT
T ss_pred EEEEEECHHHHHHHHhhCCCCCCcccCCCCcEEEEeecC
Confidence 999999999999999999999974 9999988877654
No 16
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+. This enzyme catalyzes the oxidative demethylation of sarcosine to yield glycine, H2O2, and 5,10-CH2-tetrahydrofolate (H4folate) in a reaction requiring H4folate and O2 [, ].; PDB: 2GAH_C 3ADA_C 1VRQ_C 3AD8_C 3AD9_C 3AD7_C 1X31_C.
Probab=98.09 E-value=4.7e-05 Score=61.87 Aligned_cols=83 Identities=19% Similarity=0.182 Sum_probs=64.6
Q ss_pred HHhcCcEEEECCC-CceEEEeCccHHHHHhhccccCcC--CCCCCceEEeEeecCCCcEEEEEEEEEeCCEEEEEECCCC
Q 026126 99 AADNGVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFE--ILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLT 175 (243)
Q Consensus 99 a~R~~vgl~DlS~-~~~i~V~G~DA~~fLq~l~t~dv~--~l~~G~~~yt~~Ln~~G~i~d~~v~~~~~d~f~l~~~~~~ 175 (243)
++.....+.|+|+ +..|+|+|+.+.+.|.+.|.-|+. .+++|++..|.| ++ +..++.|.+++.|.|++..+.
T Consensus 59 ~l~~~a~v~d~Sd~~~~~~lsG~~a~~vLak~~~iDl~~~af~~G~~a~T~~----~~-i~v~l~r~~~~~f~l~v~rSf 133 (147)
T PF04268_consen 59 ALGGHASVVDVSDGRVWFRLSGPAARDVLAKGCPIDLHPSAFPPGRAARTSF----AH-ISVILWRDGEDGFRLLVRRSF 133 (147)
T ss_dssp HHTTSSEEEE-TTTB--EEEESTTHHHHHTTT--S--STTTS-TTEEEEEEE----TT-EEEEEEEEETTEEEEEEBGGG
T ss_pred hhCCCeEEEecCCceEEEEEECHHHHHHHHhhCCCCCCcccCCCCcEEEEee----cC-eEEEEEEcCCCEEEEEEECch
Confidence 4555789999999 579999999999999999999996 578999999988 33 355677889999999999999
Q ss_pred hHHHHHHHHhc
Q 026126 176 CSSITEMLNKY 186 (243)
Q Consensus 176 ~~~~~~~L~~~ 186 (243)
++.++.||..-
T Consensus 134 A~~l~~~L~~A 144 (147)
T PF04268_consen 134 AEYLWHWLEDA 144 (147)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999763
No 17
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.93 E-value=0.00011 Score=59.70 Aligned_cols=79 Identities=22% Similarity=0.238 Sum_probs=69.0
Q ss_pred CcEEEECCC-CceEEEeCccHHHHHhhccccCcCC--CCCCceEEeEeecCCCcEEEEEEEEEeCCEEEEEECCCChHHH
Q 026126 103 GVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFEI--LREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSI 179 (243)
Q Consensus 103 ~vgl~DlS~-~~~i~V~G~DA~~fLq~l~t~dv~~--l~~G~~~yt~~Ln~~G~i~d~~v~~~~~d~f~l~~~~~~~~~~ 179 (243)
.+.+.|+|. ++.|.|+||.|.+.|+.++.-|+.. ++.+++..+.+ ++ +.+++.|.+|+.|-|.++.+.+..+
T Consensus 68 ~v~v~d~s~~~~~l~lqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~i----~~-~~v~i~RtGE~GfEi~v~~s~a~~l 142 (152)
T TIGR01375 68 PHAVVDLSGGRTALRISGPMAEEVLAKGCAVDLSLSAFPVGAGRRTIF----GK-IAAVIWRTGEDTFEIIVRRSFAESL 142 (152)
T ss_pred ccEEEEecCCEEEEEEEChhHHHHHHhcCCCCCCcccCCCCcEEEEEE----cC-eEEEEEEcCCCeEEEEEEhhHHHHH
Confidence 589999888 8999999999999999999888987 88899888776 33 3567888899999999999999999
Q ss_pred HHHHHhc
Q 026126 180 TEMLNKY 186 (243)
Q Consensus 180 ~~~L~~~ 186 (243)
+++|...
T Consensus 143 w~~L~~a 149 (152)
T TIGR01375 143 WHWLVDA 149 (152)
T ss_pred HHHHHHH
Confidence 9998764
No 18
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism]
Probab=97.55 E-value=0.0005 Score=57.71 Aligned_cols=86 Identities=21% Similarity=0.245 Sum_probs=71.4
Q ss_pred HHHHHhcCcEEEECCC-CceEEEeCccHHHHHhhccccCc--CCCCCCceEEeEeecCCCcEEEEEEEEEeCCEEEEEEC
Q 026126 96 ALDAADNGVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANF--EILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVS 172 (243)
Q Consensus 96 E~~a~R~~vgl~DlS~-~~~i~V~G~DA~~fLq~l~t~dv--~~l~~G~~~yt~~Ln~~G~i~d~~v~~~~~d~f~l~~~ 172 (243)
-+..+-....+.|+|| ...|+|+|+.|...|+.-|..|+ +.+++|++.-|.| |+ ...++.|.++|.|-|++-
T Consensus 95 a~A~~~~~as~VDvShg~t~I~IsG~~Ae~~L~kg~~~DL~~~~FpvG~~a~T~~----~~-~~vvl~r~g~d~fei~V~ 169 (189)
T COG4583 95 AFASLEALASAVDVSHGRTAIRISGPKAEAVLAKGCALDLSLEAFPVGAAARTIF----GK-AAVVLTRTGADTFEIEVW 169 (189)
T ss_pred HHhhccccceeeeccCCeEEEEecCHhHHHHHhcCCccccChhhCCCccceeeee----cc-eEEEEEeecCCeEEEEee
Confidence 3334455668999999 48999999999999999999999 5678999987765 22 245788999999999999
Q ss_pred CCChHHHHHHHHhc
Q 026126 173 PLTCSSITEMLNKY 186 (243)
Q Consensus 173 ~~~~~~~~~~L~~~ 186 (243)
.+-+++++.+|...
T Consensus 170 RSFAe~~w~~L~~a 183 (189)
T COG4583 170 RSFAESLWHLLLDA 183 (189)
T ss_pred hhhHHHHHHHHHHh
Confidence 99999999998864
No 19
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism]
Probab=97.33 E-value=0.0019 Score=54.31 Aligned_cols=79 Identities=13% Similarity=0.153 Sum_probs=60.9
Q ss_pred EEEEEeCCEEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCCEEEEEEECCcHHHHHhhccCCCCC--CCCCceeEEE
Q 026126 158 AHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLV--GEAYGTHRHY 235 (243)
Q Consensus 158 ~v~~~~~d~f~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~A~~vL~~l~~~dls--~~~~~~~~~~ 235 (243)
.+.++++|+++|+.++........-+... . . .....|++.....|.|.||+|+++|.+-+..||+ .||...+...
T Consensus 71 ~v~wlgPDeW~Vi~~~~~~~~~~aa~A~~-~-~-~as~VDvShg~t~I~IsG~~Ae~~L~kg~~~DL~~~~FpvG~~a~T 147 (189)
T COG4583 71 SVLWLGPDEWLVISEGGEDAAMKAAFASL-E-A-LASAVDVSHGRTAIRISGPKAEAVLAKGCALDLSLEAFPVGAAART 147 (189)
T ss_pred EEEEeCCCeeEEEcCCCccHHHHHHHhhc-c-c-cceeeeccCCeEEEEecCHhHHHHHhcCCccccChhhCCCccceee
Confidence 57899999999999887655422222221 1 1 2478899999999999999999999999999996 3999987766
Q ss_pred EEee
Q 026126 236 SINV 239 (243)
Q Consensus 236 ~i~~ 239 (243)
-++.
T Consensus 148 ~~~~ 151 (189)
T COG4583 148 IFGK 151 (189)
T ss_pred eecc
Confidence 5553
No 20
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein []. ; PDB: 1XZQ_B 1XZP_A 3GEE_A 3GEI_B 3GEH_A.
Probab=95.34 E-value=0.07 Score=41.59 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=39.2
Q ss_pred CCCceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEEEE-EEEE
Q 026126 110 SHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDI-AHAW 161 (243)
Q Consensus 110 S~~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~-~v~~ 161 (243)
+.-+.|+|+||+|.+.++.++.. .+++..+.|..+.+.+|.++|. ++++
T Consensus 12 ~aiaiIRiSG~~a~~i~~~~~~~---~~~~r~~~~~~~~~~~~~~iDe~lv~~ 61 (114)
T PF10396_consen 12 SAIAIIRISGPDALEIAQKLFGK---SPKPRRAYYGTIYDEDGEPIDEVLVLY 61 (114)
T ss_dssp -SEEEEEEESTTHHHHHHTTESS---STTTTEEEEEEEECSSTCEEEEEEEEE
T ss_pred ceEEEEEeEcHHHHHHHHHHhCc---cccCcEEEEEEEEcCCCccccceeEEe
Confidence 34578999999999999999933 3357899999999999999975 4443
No 21
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=93.34 E-value=0.18 Score=48.09 Aligned_cols=46 Identities=15% Similarity=0.238 Sum_probs=39.1
Q ss_pred CCceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEEEE
Q 026126 111 HFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDI 157 (243)
Q Consensus 111 ~~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~ 157 (243)
.-+.++|+||+|.+.++.++.. +...++-.+.|+.+.+++|.++|.
T Consensus 18 aI~IvRiSGp~a~~ia~~i~~~-~~~~~~r~a~y~~i~d~~~~~iDe 63 (454)
T COG0486 18 AIGIVRISGPDALEIAQKLFGG-LKLPKPRTAHYGHIKDENGEIIDE 63 (454)
T ss_pred eEEEEEecCHhHHHHHHHHhCC-CCCCCCcEEEEEEEEcCCCcEeee
Confidence 3468999999999999999987 443367789999999999999975
No 22
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase 2.1.2.10 from EC that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein ; GO: 0004047 aminomethyltransferase activity, 0006546 glycine catabolic process, 0005737 cytoplasm; PDB: 3TFJ_B 3TFI_B 3TFH_A 1YX2_B 3GIR_A 3A8K_D 3A8I_B 3A8J_C 1VLO_A 1WOO_A ....
Probab=89.70 E-value=1.1 Score=37.52 Aligned_cols=79 Identities=14% Similarity=0.099 Sum_probs=60.0
Q ss_pred HhcCcEEEECCC-CceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEEEEEEEE---EeCCEEEEEECCCC
Q 026126 100 ADNGVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAW---IMKNAVILVVSPLT 175 (243)
Q Consensus 100 ~R~~vgl~DlS~-~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~~v~~---~~~d~f~l~~~~~~ 175 (243)
.+..|-+-|++. +..+.|.||.|.+.|+.++..++..++..+.... . .| +.++.| .++..|.++++...
T Consensus 84 ~~~~v~i~~~~~~~~~~~l~Gp~a~~~l~~~~~~~~~~~~~~~~~~~--~--~~---~~~~~r~~~~g~~g~~l~~~~~~ 156 (211)
T PF01571_consen 84 LRSDVEIEDVSDDLAVLGLQGPKAAEVLQKLFDEDIEPLPFFSSREV--G--DG---PVLVARTGRTGELGYELIVPAEE 156 (211)
T ss_dssp HHSS-EEEEETTTEEEEEEESTTHHHHHHHHSSSSGTTSHTTBEEEE--E--TT---EEEEESCBSSSSSEEEEEEEGGG
T ss_pred cccCcEEEEcccceeEEEEEcchhhHHHHHhcccccccccccceeee--c--Cc---eEEEEecccCCCCCEEEEeccch
Confidence 457899999998 9999999999999999999666776666666554 1 12 333444 45789999999998
Q ss_pred hHHHHHHHHh
Q 026126 176 CSSITEMLNK 185 (243)
Q Consensus 176 ~~~~~~~L~~ 185 (243)
...+++.|..
T Consensus 157 ~~~~~~~l~~ 166 (211)
T PF01571_consen 157 AEALWDALLE 166 (211)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 8888888854
No 23
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed
Probab=87.30 E-value=4.6 Score=37.05 Aligned_cols=80 Identities=19% Similarity=0.173 Sum_probs=55.8
Q ss_pred hcCcEEEECCC-CceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEEEEEEEE---EeCCEEEEEECCCCh
Q 026126 101 DNGVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAW---IMKNAVILVVSPLTC 176 (243)
Q Consensus 101 R~~vgl~DlS~-~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~~v~~---~~~d~f~l~~~~~~~ 176 (243)
+..|-+.|++. +..+.|.||.+.+.|+.++..++..+++....-...++.. +.++.| .++..|.|+++....
T Consensus 130 ~~~V~i~d~~~~~~~l~l~GP~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~----~~~i~r~~~~ge~g~el~~~~~~~ 205 (359)
T PRK00389 130 GFGVEVTDRSDDLAMIAVQGPKAREKLQKLTDADLSELKPFFGAQGAEVGGG----DVLVARTGYTGEDGFEIYLPAEDA 205 (359)
T ss_pred cCCEEEEECCCCEEEEEEECccHHHHHHHhcccchhhccccceeeEEEECCe----EEEEEeceecCCCeEEEEEchHHH
Confidence 45789999887 8999999999999999998777765434443333333221 123334 357889999988777
Q ss_pred HHHHHHHH
Q 026126 177 SSITEMLN 184 (243)
Q Consensus 177 ~~~~~~L~ 184 (243)
..+++.|.
T Consensus 206 ~~l~~~L~ 213 (359)
T PRK00389 206 EALWDALL 213 (359)
T ss_pred HHHHHHHH
Confidence 77776664
No 24
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=84.36 E-value=2.1 Score=40.80 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=35.6
Q ss_pred CCceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEEEE
Q 026126 111 HFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDI 157 (243)
Q Consensus 111 ~~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~ 157 (243)
.-+.++|+||+|.+.++.++..+.. .++-+..|+.+.+++|.++|.
T Consensus 8 ~i~viRiSG~~a~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iD~ 53 (442)
T TIGR00450 8 AIHIIRLSGPDSLSILKKITNKLNT-ASGMRIQYGHIIDSNNKCKDD 53 (442)
T ss_pred eEEEEEeehHHHHHHHHHHhCCCCC-CCCcEEEEEEEECCCCCEeee
Confidence 4478999999999999999843221 135678899999988999864
No 25
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]
Probab=82.62 E-value=6.3 Score=36.98 Aligned_cols=81 Identities=9% Similarity=0.035 Sum_probs=59.6
Q ss_pred cCcEEEEC-CCCceEEEeCccHHHHHhhccccCc-CCCCCCceEEeEeecCCCcEEEEEEEE---EeCCEEEEEECCCCh
Q 026126 102 NGVAAVDL-SHFGRIRVSGDDRIQFLHNQSTANF-EILREGQGCDTVFVTPTARTIDIAHAW---IMKNAVILVVSPLTC 176 (243)
Q Consensus 102 ~~vgl~Dl-S~~~~i~V~G~DA~~fLq~l~t~dv-~~l~~G~~~yt~~Ln~~G~i~d~~v~~---~~~d~f~l~~~~~~~ 176 (243)
-.+-+.+. ..++.|.|.||.|.+.|+.++..+. ..++.-+....-+ .|+. ++.+.| .+|+.|-|.+++..+
T Consensus 137 ~~v~~~~~t~~~~~lalqGPkAr~il~~~~~~~~~~~l~~~~~~~~~i---~g~~-~~~i~R~gyTGE~G~Ei~~p~~~a 212 (379)
T COG0404 137 LDVTLTSVTEDLAVLALQGPKAREVLAKLVDGDLVEALPFFAFKEVTI---GGGV-PVRISRTGYTGELGFEIYVPAEDA 212 (379)
T ss_pred cceEEeeccccEEEEEEECcCHHHHHHHhccccccccCCceEEEEEEe---cCCc-eEEEEeccccCCCeEEEEecHHHH
Confidence 35666776 4689999999999999999999884 6666555543322 2332 445555 469999999999999
Q ss_pred HHHHHHHHhc
Q 026126 177 SSITEMLNKY 186 (243)
Q Consensus 177 ~~~~~~L~~~ 186 (243)
..+++-|...
T Consensus 213 ~~vw~aL~~a 222 (379)
T COG0404 213 AAVWDALLEA 222 (379)
T ss_pred HHHHHHHHHh
Confidence 8888877654
No 26
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=81.34 E-value=2.3 Score=40.56 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=35.9
Q ss_pred CCCceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEEEE
Q 026126 110 SHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDI 157 (243)
Q Consensus 110 S~~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~ 157 (243)
+.-+.|+|+||+|.+.++.++...++ ++..+.|+.+.++ |.++|.
T Consensus 17 ~~i~viRiSG~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~iD~ 61 (449)
T PRK05291 17 GGIGIIRISGPDALEIAQKLFGKKLP--KPRTAHYGHIRDP-GEVIDE 61 (449)
T ss_pred ceEEEEEEEhHHHHHHHHHHhCCCCC--CCcEEEEEEEecC-Ccccce
Confidence 34468999999999999999864443 5778999989885 888864
No 27
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional
Probab=80.17 E-value=8.4 Score=35.66 Aligned_cols=78 Identities=13% Similarity=0.113 Sum_probs=53.6
Q ss_pred cCcEEEECCCCceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEEEEEEEEE---eCCEEEEEECCCChHH
Q 026126 102 NGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWI---MKNAVILVVSPLTCSS 178 (243)
Q Consensus 102 ~~vgl~DlS~~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~~v~~~---~~d~f~l~~~~~~~~~ 178 (243)
..|-+-|.+..+.+.|.||+|.+.|+.++ .+++.++-.......+ .|. ...+.|. ++..|.|.++......
T Consensus 137 ~~V~i~d~~~~~~l~l~GP~a~~il~~l~-~~~~~~~~~~~~~~~~---~g~--~~~i~R~~~~Ge~G~el~~~~~~~~~ 210 (370)
T PRK13579 137 DECEVNPLDDRALLALQGPEAEAVLADLG-PPVAALRFMDGFEPRL---HGV--DCFVSRSGYTGEDGFEISVPADAAEA 210 (370)
T ss_pred CCcEEEECCCcEEEEEECcCHHHHHHHhh-hhhhcCCCceEEEEEE---CCe--EEEEEEeeecCCCEEEEEEcHHHHHH
Confidence 37899999889999999999999999987 5666544444433222 121 1234443 6888999998877776
Q ss_pred HHHHHHh
Q 026126 179 ITEMLNK 185 (243)
Q Consensus 179 ~~~~L~~ 185 (243)
+++.|..
T Consensus 211 l~~~l~~ 217 (370)
T PRK13579 211 LAEALLA 217 (370)
T ss_pred HHHHHHc
Confidence 7665543
No 28
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed
Probab=77.00 E-value=15 Score=34.08 Aligned_cols=77 Identities=14% Similarity=0.041 Sum_probs=53.2
Q ss_pred CcEEEECCCCceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEEEEEEEEE---eCCEEEEEECCC-ChHH
Q 026126 103 GVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWI---MKNAVILVVSPL-TCSS 178 (243)
Q Consensus 103 ~vgl~DlS~~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~~v~~~---~~d~f~l~~~~~-~~~~ 178 (243)
.+-+.| ..++.+.|.||.|.+.|+.++..++..++-.+....-+ .| .++.+.|. +|..|-|.++.. .+..
T Consensus 141 ~v~~~~-~~~~~l~lqGP~s~~il~~l~~~~l~~~~~~~~~~~~i---~g--~~~~i~R~g~tGE~G~Ei~~~~~~~a~~ 214 (368)
T PRK12486 141 DVLVVE-PDVSPLAVQGPKADALMARVFGEAIRDLRFFRFGYFDF---EG--TDLVIARSGYSKQGGFEIYVEGSDLGMP 214 (368)
T ss_pred cEEEec-CCeEEEEeECcCHHHHHHHHhcCChhhCCCceeEEEEE---CC--cEEEEEeccccCCceEEEEeccHHHHHH
Confidence 345555 45899999999999999999877888766655554433 23 23456665 478888888765 4666
Q ss_pred HHHHHHh
Q 026126 179 ITEMLNK 185 (243)
Q Consensus 179 ~~~~L~~ 185 (243)
+++.|..
T Consensus 215 l~~~L~~ 221 (368)
T PRK12486 215 LWDALFE 221 (368)
T ss_pred HHHHHHh
Confidence 7776643
No 29
>TIGR00528 gcvT glycine cleavage system T protein. Eukaryotic forms are mitochondrial and have an N-terminal transit peptide.
Probab=74.22 E-value=21 Score=32.85 Aligned_cols=82 Identities=12% Similarity=-0.004 Sum_probs=54.2
Q ss_pred HhcCcEEEECCC-CceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEEEEEEEEE---eCCEEEEEECCCC
Q 026126 100 ADNGVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWI---MKNAVILVVSPLT 175 (243)
Q Consensus 100 ~R~~vgl~DlS~-~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~~v~~~---~~d~f~l~~~~~~ 175 (243)
.+..+.+.|.+. +..+-|.||++.+.|+.++..++..+++-...... +-.|. +.++.|. ++..|.|+++...
T Consensus 127 ~~~~v~i~~~t~~~~~l~l~GP~a~~~l~~l~~~~~~~~~~~~~~~~~--~~~g~--~~~i~r~~~~ge~g~el~~~~~~ 202 (361)
T TIGR00528 127 AEPFGIEDTQSDDISLLAVQGPKAATILNPLQDQAVEGLKPFFFVQEA--DFSGR--KAFIARTGYTGEDGYEIALPNEK 202 (361)
T ss_pred CcCCcEEEECcCCEEEEEeECcCHHHHHHHhcccchhhcccccceeEE--EECCc--eEEEEEcceeCCCeEEEEecHHH
Confidence 456788999886 78999999999999999987777654332211111 11121 2234443 5788999998876
Q ss_pred hHHHHHHHHh
Q 026126 176 CSSITEMLNK 185 (243)
Q Consensus 176 ~~~~~~~L~~ 185 (243)
...+++.|..
T Consensus 203 ~~~l~~~l~~ 212 (361)
T TIGR00528 203 AADFWRALVE 212 (361)
T ss_pred HHHHHHHHHh
Confidence 6666666543
No 30
>PF06978 POP1: Ribonucleases P/MRP protein subunit POP1; InterPro: IPR009723 This entry represents a conserved region approximately 150 residues long located towards the N terminus of the POP1 subunit that is common to both the RNase MRP and RNase P ribonucleoproteins (3.1.26.5 from EC) []. These RNA-containing enzymes generate mature tRNA molecules by cleaving their 5' ends.; GO: 0004526 ribonuclease P activity, 0001682 tRNA 5'-leader removal
Probab=72.72 E-value=3.5 Score=34.88 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=25.6
Q ss_pred ChHHHHHHHhcCcEEEECCCCceEEEeCc
Q 026126 92 NDGEALDAADNGVAAVDLSHFGRIRVSGD 120 (243)
Q Consensus 92 ~~~~E~~a~R~~vgl~DlS~~~~i~V~G~ 120 (243)
....-+++.++++.++|+|+++.|+|+|.
T Consensus 159 ~~R~~~Ra~~~~~~~~D~SY~~~i~l~g~ 187 (187)
T PF06978_consen 159 SFRATYRASKHGCVLHDASYYSCIELEGT 187 (187)
T ss_pred chhHHHHHhcCCEEEEecccceeEEEEeC
Confidence 45667789999999999999999999983
No 31
>PLN02319 aminomethyltransferase
Probab=67.68 E-value=37 Score=31.86 Aligned_cols=76 Identities=9% Similarity=0.041 Sum_probs=51.4
Q ss_pred EEEEC-CCCceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEEEEEEEEE---eCCEEEEEECCCChHHHH
Q 026126 105 AAVDL-SHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWI---MKNAVILVVSPLTCSSIT 180 (243)
Q Consensus 105 gl~Dl-S~~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~~v~~~---~~d~f~l~~~~~~~~~~~ 180 (243)
..+|. ..++.|.|.||.+.+.|+.+...|+..++-......-+ .| .+..+.|. ++..|-|.++......++
T Consensus 169 v~~~~~~~~~~l~lqGP~s~~~l~~l~~~~l~~~~f~~~~~~~i---~g--~~v~i~R~g~tGE~G~El~~p~~~a~~l~ 243 (404)
T PLN02319 169 VSWHVHDERSLLALQGPLAAPVLQHLTKEDLSKMYFGDFRITDI---NG--ADCFLTRTGYTGEDGFEISVPSEHAVDLA 243 (404)
T ss_pred EEEEEcCCeEEEEEECccHHHHHHHhcccchhhCCCceEEEEEE---CC--eeEEEEEeeecCCCeEEEEEcHHHHHHHH
Confidence 34444 46789999999999999999877777655444432221 22 12344454 688899999887777777
Q ss_pred HHHHh
Q 026126 181 EMLNK 185 (243)
Q Consensus 181 ~~L~~ 185 (243)
+.|..
T Consensus 244 ~~L~~ 248 (404)
T PLN02319 244 KALLE 248 (404)
T ss_pred HHHHh
Confidence 76654
No 32
>KOG2770 consensus Aminomethyl transferase [Amino acid transport and metabolism]
Probab=65.97 E-value=17 Score=33.84 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=62.0
Q ss_pred hHHHHHHHhc---CcEEEECCCCceEEEeCccHHHHHhhccc--cCcCCCCCCceEEeEeecCCCcEEEEEEE---EEeC
Q 026126 93 DGEALDAADN---GVAAVDLSHFGRIRVSGDDRIQFLHNQST--ANFEILREGQGCDTVFVTPTARTIDIAHA---WIMK 164 (243)
Q Consensus 93 ~~~E~~a~R~---~vgl~DlS~~~~i~V~G~DA~~fLq~l~t--~dv~~l~~G~~~yt~~Ln~~G~i~d~~v~---~~~~ 164 (243)
...+..|.+. .+.+-=+...+.+.+.||.+.+-||.+++ .|+.+|+-|+..+.-+ +|..- +.+. +.+|
T Consensus 149 ~k~~~~a~ks~gkDv~~~~~~~r~l~A~Qgp~~akvlq~l~~k~~DL~~l~fg~~~~~~~---~G~~~-~~vtr~gytgE 224 (401)
T KOG2770|consen 149 LKDHFFAWKSKGKDVSWETLDGRSLLALQGPEAAKVLQKLLSKLGDLSKLPFGQSQVYDF---KGGPG-CRVTRGGYTGE 224 (401)
T ss_pred HHHHHHhhhhccceeeEEEecccchhhhcChHHHHHHHHhhccccchhcccccceEEEEe---cCCCc-eEEeccccccC
Confidence 3344444433 34442233788999999999999999999 9999999898765443 33331 2333 3579
Q ss_pred CEEEEEECCCChHHHHHHHHh
Q 026126 165 NAVILVVSPLTCSSITEMLNK 185 (243)
Q Consensus 165 d~f~l~~~~~~~~~~~~~L~~ 185 (243)
|.|-+.++.+.+..+.+-|-.
T Consensus 225 DGfeisv~~~~Av~la~~LLa 245 (401)
T KOG2770|consen 225 DGFEISVPPEGAVDLAETLLA 245 (401)
T ss_pred CceEEecCCchhHHHHHHHhh
Confidence 999999999888888775543
No 33
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=61.66 E-value=35 Score=35.90 Aligned_cols=78 Identities=13% Similarity=0.038 Sum_probs=54.7
Q ss_pred CcEEEECCC-CceEEEeCccHHHHHhhccc-cCcC--CCCCCceEEeEeecCCCcEEEEEEEEE---eCCEEEEEECCCC
Q 026126 103 GVAAVDLSH-FGRIRVSGDDRIQFLHNQST-ANFE--ILREGQGCDTVFVTPTARTIDIAHAWI---MKNAVILVVSPLT 175 (243)
Q Consensus 103 ~vgl~DlS~-~~~i~V~G~DA~~fLq~l~t-~dv~--~l~~G~~~yt~~Ln~~G~i~d~~v~~~---~~d~f~l~~~~~~ 175 (243)
.|-+.|+|. ++.|.|.||++.+.|+.++. .|+. .++........+ .|. +..+.|. +|..|-|.++...
T Consensus 738 ~V~i~d~t~~~a~i~l~GP~s~~vl~~l~~~~dl~~~~~~~~~~~~~~~---~g~--~~~i~R~~~tGE~GyEi~~p~~~ 812 (985)
T TIGR01372 738 DVYLTSVTDQWATLAVSGPKARDLLAELVDGLDLSNEAFPFMAIKEGTL---AGV--PARLFRISFSGELAFEVNVPADY 812 (985)
T ss_pred CEEEEECCCCEEEEEEECHhHHHHHHHhcCcccCccccCCCceeEEEEE---CCc--EEEEEeccccCCceEEEEecHHH
Confidence 578889885 89999999999999999976 4652 234333333322 121 2345554 6889999999888
Q ss_pred hHHHHHHHHh
Q 026126 176 CSSITEMLNK 185 (243)
Q Consensus 176 ~~~~~~~L~~ 185 (243)
...+++.|..
T Consensus 813 ~~~l~~~L~~ 822 (985)
T TIGR01372 813 GEAVWEALME 822 (985)
T ss_pred HHHHHHHHHh
Confidence 8888887765
No 34
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=54.31 E-value=96 Score=31.69 Aligned_cols=91 Identities=9% Similarity=0.031 Sum_probs=63.4
Q ss_pred hHHHHHHHhcCcEEEECCC-CceEEEeCccHHHHHhhccccCcCCC--CCCceEEeEeecCCCcEEEEEEEEEeCCEEEE
Q 026126 93 DGEALDAADNGVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFEIL--REGQGCDTVFVTPTARTIDIAHAWIMKNAVIL 169 (243)
Q Consensus 93 ~~~E~~a~R~~vgl~DlS~-~~~i~V~G~DA~~fLq~l~t~dv~~l--~~G~~~yt~~Ln~~G~i~d~~v~~~~~d~f~l 169 (243)
+.+|..--+.+|-|.|++. .+.|.|.||.+.+.||-++-.|+..- +.-++..--+=+. +|..+-+...+|=.|.|
T Consensus 597 i~k~~~~~~~~v~l~DvT~~~~~l~i~GP~sR~vLqelt~~dls~~~fp~~~~k~l~vg~~--girairis~~GELG~~L 674 (856)
T KOG2844|consen 597 IKKEMPKGGSNVELKDVTDELGALSIIGPQSRKVLQELTDADLSDDHFPFLTTKELKVGNA--GIRAIRISHTGELGWEL 674 (856)
T ss_pred HHHHhhccCCceeeeechhhhceeeecCchHHHHHHhccCCCCCccccCcceeeeeecccc--ceEEEEEEeccccceEE
Confidence 4444444578999999998 59999999999999999999998741 1222221111111 44466677778888989
Q ss_pred EECCCChHHHHHHHHh
Q 026126 170 VVSPLTCSSITEMLNK 185 (243)
Q Consensus 170 ~~~~~~~~~~~~~L~~ 185 (243)
-.+......+.+-|-+
T Consensus 675 yip~e~~~~vY~~im~ 690 (856)
T KOG2844|consen 675 YIPNEDAVAVYRAIMN 690 (856)
T ss_pred EechHHHHHHHHHHHh
Confidence 8888877777665544
No 35
>PRK09559 putative global regulator; Reviewed
Probab=52.02 E-value=28 Score=31.60 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=33.7
Q ss_pred eEEEEecCCEEEEEEECCcHHHHHhhccCCCCCCCCCceeE
Q 026126 193 VEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHR 233 (243)
Q Consensus 193 V~i~d~t~~~~~l~v~GP~A~~vL~~l~~~dls~~~~~~~~ 233 (243)
..+.++++ +++|.|.||.|.+.|+.++..|+..++...++
T Consensus 19 ~~l~~L~~-~g~i~v~G~Da~~FLqg~~T~Dv~~L~~g~~~ 58 (327)
T PRK09559 19 LTLISLDD-WALATITGADSEKYLQGQVTADVSQLTEDQHL 58 (327)
T ss_pred eEEEcCcc-ceEEEEECCcHHHHhcccccccccccCCCCee
Confidence 56777764 89999999999999999999999887766554
No 36
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein []. ; PDB: 1XZQ_B 1XZP_A 3GEE_A 3GEI_B 3GEH_A.
Probab=48.29 E-value=57 Score=25.35 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=20.6
Q ss_pred CCEEEEEEECCcHHHHHhhccCCCC
Q 026126 200 KQTCLFVVVGPKSNQVMRDLNLGDL 224 (243)
Q Consensus 200 ~~~~~l~v~GP~A~~vL~~l~~~dl 224 (243)
...+++.|.||+|.+++++++...+
T Consensus 12 ~aiaiIRiSG~~a~~i~~~~~~~~~ 36 (114)
T PF10396_consen 12 SAIAIIRISGPDALEIAQKLFGKSP 36 (114)
T ss_dssp -SEEEEEEESTTHHHHHHTTESSST
T ss_pred ceEEEEEeEcHHHHHHHHHHhCccc
Confidence 4678999999999999999994433
No 37
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=47.27 E-value=40 Score=23.80 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=33.4
Q ss_pred ceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEEEEEEEEEeCCEEEEE
Q 026126 113 GRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILV 170 (243)
Q Consensus 113 ~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~~v~~~~~d~f~l~ 170 (243)
||+ |.=|+..+=|=.+.+..+. -. -+.++|++|.-+|++-+-.++|+.|++
T Consensus 19 GKv-i~lP~SleeLl~ia~~kfg-----~~-~~~v~~~dgaeIdDI~~IRDgD~L~~~ 69 (69)
T PF11834_consen 19 GKV-IWLPDSLEELLKIASEKFG-----FS-ATKVLNEDGAEIDDIDVIRDGDHLYLV 69 (69)
T ss_pred CEE-EEcCccHHHHHHHHHHHhC-----CC-ceEEEcCCCCEEeEEEEEEcCCEEEEC
Confidence 444 3346766666666565554 22 577899999999776666667777763
No 38
>KOG0688 consensus Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
Probab=38.84 E-value=1.4e+02 Score=27.80 Aligned_cols=89 Identities=16% Similarity=0.169 Sum_probs=54.1
Q ss_pred cccCcCCCCCCceEEe-EeecCCCcEEEEEE----EEEeCCEEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCCEEE
Q 026126 130 STANFEILREGQGCDT-VFVTPTARTIDIAH----AWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCL 204 (243)
Q Consensus 130 ~t~dv~~l~~G~~~yt-~~Ln~~G~i~d~~v----~~~~~d~f~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~ 204 (243)
+-|.|+ +-|.+.|+ -+.+++|+-.-..+ .+--....+|.-+.-+.+.+.+.|..--.+ ...+.| +.-++
T Consensus 80 lynkvP--pnglvly~gti~tedgkekkv~idfepfkpintslyLcdNkfhte~l~~Ll~sd~kf--gfivmD--g~~tl 153 (431)
T KOG0688|consen 80 LYNKVP--PNGLVLYTGTIVTEDGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALKELLESDNKF--GFIVMD--GNGTL 153 (431)
T ss_pred HhccCC--CCceEEEeeeeEccCCceeeeecccccccccccceEecCCccchHHHHHHHhhcccc--cEEEEc--CCcee
Confidence 345666 56889999 89999998332211 111123445544444555666655543322 233444 44478
Q ss_pred EEEECCcHHHHHhhccCCCCC
Q 026126 205 FVVVGPKSNQVMRDLNLGDLV 225 (243)
Q Consensus 205 l~v~GP~A~~vL~~l~~~dls 225 (243)
++..+|+.+++|.+++ +|++
T Consensus 154 fgtl~gntrevLhkft-VdlP 173 (431)
T KOG0688|consen 154 FGTLQGNTREVLHKFT-VDLP 173 (431)
T ss_pred EEEeccchHhhhheee-ecCc
Confidence 8999999999999885 4554
No 39
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=34.00 E-value=73 Score=21.42 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=20.7
Q ss_pred CCceEEeEeecCCCcEEEEEEEEEe
Q 026126 139 EGQGCDTVFVTPTARTIDIAHAWIM 163 (243)
Q Consensus 139 ~G~~~yt~~Ln~~G~i~d~~v~~~~ 163 (243)
.|.+...+.++++|.+.+..++.-.
T Consensus 9 ~G~v~v~~~i~~~G~v~~~~i~~ss 33 (74)
T TIGR01352 9 EGTVVVRFTVDADGRVTSVSVLKSS 33 (74)
T ss_pred ceEEEEEEEECCCCCEEEEEEEEcC
Confidence 4899999999999999887666543
No 40
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=33.28 E-value=2.2e+02 Score=23.49 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=48.0
Q ss_pred hHHHHHHCCCeEecCC----cccccCChHHHHHHHhcCcEEEECCCCceEEEeCccHHHHHhhccccCcCCCCCCc--eE
Q 026126 70 LLETVKSEGAKISGEG----IVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQ--GC 143 (243)
Q Consensus 70 l~~~~~~~GA~f~~~~----~p~~f~~~~~E~~a~R~~vgl~DlS~~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~--~~ 143 (243)
||+..++.|-+.-++. .-+..++.++-..-|+.+=|+ ...-|.|++|.|++|.-+-++|....=-.+..+. ..
T Consensus 49 Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgV-tFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWN 127 (162)
T COG0386 49 LYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGV-TFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWN 127 (162)
T ss_pred HHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCc-eeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCcccee
Confidence 4555556666543321 112233444445556666664 2234789999999999988888665521111222 23
Q ss_pred Ee-EeecCCCcEE
Q 026126 144 DT-VFVTPTARTI 155 (243)
Q Consensus 144 yt-~~Ln~~G~i~ 155 (243)
++ .+.+.+|.|+
T Consensus 128 FtKFLvdr~G~VV 140 (162)
T COG0386 128 FTKFLVDRDGNVV 140 (162)
T ss_pred eEEEEEcCCCcEE
Confidence 33 4567789874
No 41
>PF00673 Ribosomal_L5_C: ribosomal L5P family C-terminus; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L5, ~180 amino acids in length, is one of the proteins from the large ribosomal subunit. In Escherichia coli, L5 is known to be involved in binding 5S RNA to the large ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, , , ], groups: Eubacterial L5. Algal chloroplast L5. Cyanelle L5. Archaebacterial L5. Mammalian L11. Tetrahymena thermophila L21. Dictyostelium discoideum (Slime mold) L5 Saccharomyces cerevisiae (Baker's yeast) L16 (39A). Plant mitochondrial L5. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1IQ4_B 2ZJR_D 2ZJP_D 3PIO_D 3CF5_D 2ZJQ_D 3DLL_D 3PIP_D 2WDL_G 3UZN_G ....
Probab=32.33 E-value=24 Score=26.32 Aligned_cols=40 Identities=13% Similarity=0.251 Sum_probs=27.4
Q ss_pred eEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCc
Q 026126 114 RIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTAR 153 (243)
Q Consensus 114 ~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~ 153 (243)
++.++|+.+.+||++++..=+++++..+....--.|..|.
T Consensus 5 kvTLRg~~m~~FL~kli~~vlPrik~f~g~~~~~fd~~Gn 44 (95)
T PF00673_consen 5 KVTLRGKKMYEFLDKLITIVLPRIKDFKGLKASSFDNSGN 44 (95)
T ss_dssp EEEEEHHHHHHHHHHHHHTTTTTSSSTSSBSSTTBSSSSE
T ss_pred EEEEccHHHHHHHHHHHHHhhhhcccccccCccccCCCce
Confidence 7889999999999999999666554433322222355554
No 42
>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only]
Probab=29.47 E-value=53 Score=29.88 Aligned_cols=41 Identities=15% Similarity=0.232 Sum_probs=32.4
Q ss_pred CeEEEEecCCEEEEEEECCcHHHHHhhccCCCCCCCCCceeE
Q 026126 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHR 233 (243)
Q Consensus 192 ~V~i~d~t~~~~~l~v~GP~A~~vL~~l~~~dls~~~~~~~~ 233 (243)
...+.+++ .+++|.|+|+.+.+.|+.+...|+.+++.....
T Consensus 13 ~~~l~~l~-~~~li~V~G~D~~kfLq~q~T~dv~~l~~g~~~ 53 (305)
T COG0354 13 PLTLVLLS-DRALIRVSGADAEKFLQGQLTNDVSALAEGQST 53 (305)
T ss_pred ccEEEecC-CceeEEEECCCHHHHHhHHHHHhHhhcccCcee
Confidence 35566665 579999999999999999988888887755443
No 43
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=25.59 E-value=62 Score=26.22 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=14.6
Q ss_pred CceEEeEeecCCCcEEEEEEE
Q 026126 140 GQGCDTVFVTPTARTIDIAHA 160 (243)
Q Consensus 140 G~~~yt~~Ln~~G~i~d~~v~ 160 (243)
...+..+++|++|.++|.+.+
T Consensus 18 ~~~~~~v~ld~~G~v~d~~~~ 38 (150)
T PF14639_consen 18 DDAVFCVVLDENGEVLDHLKL 38 (150)
T ss_dssp TS-EEEEEE-TTS-EEEEEEE
T ss_pred CCCEEEEEECCCCcEEEEEEE
Confidence 357889999999999987554
No 44
>KOG0397 consensus 60S ribosomal protein L11 [Translation, ribosomal structure and biogenesis]
Probab=24.92 E-value=66 Score=26.09 Aligned_cols=37 Identities=16% Similarity=0.340 Sum_probs=25.8
Q ss_pred EEEECCcHHHHHhhccC--------CCCCC---CCCceeEEEEEeeee
Q 026126 205 FVVVGPKSNQVMRDLNL--------GDLVG---EAYGTHRHYSINVFT 241 (243)
Q Consensus 205 l~v~GP~A~~vL~~l~~--------~dls~---~~~~~~~~~~i~~~~ 241 (243)
..|.||+|.++|++-.. ..+|+ |.|.-...|++|..+
T Consensus 70 ~tVrG~KAeeiLe~gLkVkeYeL~~~nFS~tgnFGFGiqEHIDLGikY 117 (176)
T KOG0397|consen 70 VTVRGPKAEEILERGLKVKEYELRKRNFSDTGNFGFGIQEHIDLGIKY 117 (176)
T ss_pred EEeeCccHHHHHHhccchhhhhhhhhcccccCCcccchhhheecccee
Confidence 56899999999986432 24454 777776777776543
No 45
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.91 E-value=1.5e+02 Score=21.17 Aligned_cols=45 Identities=13% Similarity=0.014 Sum_probs=30.1
Q ss_pred eEEEeCccHHHHHhhccccCcCCCCCCceEEeEee--cCCCcEEEEEEE
Q 026126 114 RIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFV--TPTARTIDIAHA 160 (243)
Q Consensus 114 ~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~L--n~~G~i~d~~v~ 160 (243)
.++|.++|..-+|..+.. -+..+.. ++.++-+- +.-.+++|.+++
T Consensus 2 vlev~a~DRpGLL~~i~~-~l~~~~l-~i~~AkI~~~T~Gerv~D~Fyv 48 (75)
T cd04896 2 LLQIRCVDQKGLLYDILR-TSKDCNI-QISYGRFSSKVKGYREVDLFIV 48 (75)
T ss_pred EEEEEeCCcccHHHHHHH-HHHHCCe-EEEEEEEecCcccCEEEEEEEE
Confidence 689999999999998843 3332121 45555555 666677787776
No 46
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=24.32 E-value=1e+02 Score=20.98 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=29.1
Q ss_pred CCceEEeEeecCCCcEEEEEEEEEeCCEEEEEECCCChHHHHHHHHh
Q 026126 139 EGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNK 185 (243)
Q Consensus 139 ~G~~~yt~~Ln~~G~i~d~~v~~~~~d~f~l~~~~~~~~~~~~~L~~ 185 (243)
.|.+...+.+|++|.+.+..++.-.+.. ...+..++.+++
T Consensus 15 ~G~v~v~~~I~~~G~v~~~~v~~s~~~~-------~l~~~a~~~v~~ 54 (79)
T PF03544_consen 15 EGTVVVEFTIDPDGRVSDVRVIQSSGPP-------ILDEAALRAVKK 54 (79)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEESSSS-------CSHHHHHHHHCC
T ss_pred eEEEEEEEEEeCCCCEEEEEEEEccCHH-------HHHHHHHHHHHh
Confidence 4889999999999999987666554422 345666777776
No 47
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=23.03 E-value=1.5e+02 Score=20.61 Aligned_cols=28 Identities=14% Similarity=0.060 Sum_probs=17.2
Q ss_pred CCCceEEeEeecCCCcEEEEEEEEEeCC
Q 026126 138 REGQGCDTVFVTPTARTIDIAHAWIMKN 165 (243)
Q Consensus 138 ~~G~~~yt~~Ln~~G~i~d~~v~~~~~d 165 (243)
..+++.....++++|+|.+.-+.+-.++
T Consensus 24 ~~~~~~V~i~i~~dG~v~~~~i~~sSG~ 51 (85)
T PF13103_consen 24 GGLSVTVRITIDPDGRVISVRIVKSSGN 51 (85)
T ss_dssp TT--EEEEEEE-TTSBEEEEEEEE--S-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCC
Confidence 4568999999999999976555554443
No 48
>COG2199 c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal transduction mechanisms]
Probab=22.20 E-value=1.9e+02 Score=22.96 Aligned_cols=55 Identities=16% Similarity=0.272 Sum_probs=36.7
Q ss_pred CcEEEECCCCceEE-EeCcc----HHHHHhhccccCcCCCCCCceEEeEeecCCCcEEEEEEEEEeCCEEEEEECCCCh
Q 026126 103 GVAAVDLSHFGRIR-VSGDD----RIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTC 176 (243)
Q Consensus 103 ~vgl~DlS~~~~i~-V~G~D----A~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~~v~~~~~d~f~l~~~~~~~ 176 (243)
.+.++|+.+|-.|- --|.+ .+..+-..+.+.+.. +. .+.|.++|+|.++.+....
T Consensus 53 ~l~~iDiD~Fk~iND~~Gh~~GD~vL~~va~~L~~~~~~---~~----------------~~~R~gGdEF~i~l~~~~~ 112 (181)
T COG2199 53 ALLLLDLDHFKQINDTYGHAAGDEVLREVARRLRSNLRE---GD----------------LVARLGGDEFAVLLPGTSL 112 (181)
T ss_pred EEEEEeCcCCccccccccchHHHHHHHHHHHHHHHhcCC---CC----------------EEEEeccceeEEEeCCCCH
Confidence 68889999998755 33544 444444444444431 11 3789999999999988653
No 49
>COG0094 RplE Ribosomal protein L5 [Translation, ribosomal structure and biogenesis]
Probab=21.51 E-value=62 Score=27.18 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=22.5
Q ss_pred ceEEEeCccHHHHHhhccccCcCCCCC
Q 026126 113 GRIRVSGDDRIQFLHNQSTANFEILRE 139 (243)
Q Consensus 113 ~~i~V~G~DA~~fLq~l~t~dv~~l~~ 139 (243)
.++.++|+.+.+||++++.--++.+..
T Consensus 87 ~KVTLRg~rm~eFL~rl~~i~lPrvrd 113 (180)
T COG0094 87 VKVTLRGERMYEFLDRLLNIALPRVRD 113 (180)
T ss_pred EEEEEchHHHHHHHHHHHHhhcccccc
Confidence 389999999999999999887765443
Done!