Query 026126
Match_columns 243
No_of_seqs 237 out of 1782
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 06:11:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pj5_A N,N-dimethylglycine oxi 100.0 1.3E-45 4.3E-50 368.5 17.1 223 8-240 371-642 (830)
2 1yx2_A Aminomethyltransferase; 100.0 1.8E-41 6.2E-46 310.6 20.9 176 56-239 2-182 (365)
3 1wos_A Aminomethyltransferase; 100.0 6.6E-41 2.3E-45 306.8 22.8 174 59-239 1-178 (364)
4 1vlo_A Aminomethyltransferase; 100.0 2.3E-41 7.9E-46 311.9 19.0 174 54-235 9-191 (381)
5 3gir_A Aminomethyltransferase; 100.0 4.8E-41 1.6E-45 310.9 18.7 169 58-236 32-205 (393)
6 3tfi_A GCVT-like aminomethyltr 100.0 2.6E-41 8.8E-46 310.4 16.5 181 45-240 2-188 (369)
7 1v5v_A Aminomethyltransferase; 100.0 4.4E-40 1.5E-44 305.2 22.0 176 57-239 3-188 (401)
8 1wsr_A Aminomethyltransferase; 100.0 2.2E-40 7.6E-45 304.5 19.1 175 57-239 3-186 (375)
9 2gag_A Heterotetrameric sarcos 100.0 3.7E-39 1.3E-43 326.9 21.8 189 45-239 548-767 (965)
10 3ttg_A Putative aminomethyltra 100.0 3.9E-32 1.3E-36 248.2 16.7 141 91-232 20-165 (355)
11 1vly_A SPOT PR51, unknown prot 99.9 5.7E-27 1.9E-31 212.7 15.8 124 103-229 30-155 (338)
12 1x31_C Sarcosine oxidase gamma 99.9 5.7E-24 2E-28 180.6 10.6 129 100-241 26-160 (206)
13 2gag_C Heterotetrameric sarcos 99.9 5.2E-23 1.8E-27 175.2 13.2 129 100-241 28-162 (210)
14 2gag_C Heterotetrameric sarcos 97.9 0.00016 5.5E-09 60.8 11.8 80 103-187 111-193 (210)
15 1x31_C Sarcosine oxidase gamma 97.8 0.00017 5.9E-09 60.4 10.8 80 103-187 109-191 (206)
16 2bry_A NEDD9 interacting prote 96.2 0.00029 9.8E-09 66.1 -2.7 60 9-75 428-495 (497)
17 1wos_A Aminomethyltransferase; 93.8 0.23 7.8E-06 44.5 8.8 79 102-185 130-212 (364)
18 1wsr_A Aminomethyltransferase; 93.4 0.32 1.1E-05 43.7 9.0 79 102-185 140-221 (375)
19 1v5v_A Aminomethyltransferase; 92.4 0.54 1.8E-05 42.7 9.1 79 102-185 140-236 (401)
20 1yx2_A Aminomethyltransferase; 91.8 0.83 2.8E-05 40.8 9.5 80 102-186 133-217 (365)
21 3tfi_A GCVT-like aminomethyltr 90.6 0.84 2.9E-05 41.0 8.3 79 102-186 141-223 (369)
22 1vlo_A Aminomethyltransferase; 90.1 0.48 1.7E-05 42.8 6.2 75 101-185 143-225 (381)
23 3geh_A MNME, tRNA modification 88.8 1.5 5E-05 40.7 8.6 76 110-185 22-109 (462)
24 1pj5_A N,N-dimethylglycine oxi 88.6 0.9 3.1E-05 44.8 7.4 78 103-185 591-675 (830)
25 3gee_A MNME, tRNA modification 84.1 3.6 0.00012 38.2 8.6 62 111-173 29-103 (476)
26 1xzp_A Probable tRNA modificat 82.3 2 6.7E-05 40.1 5.9 46 110-158 46-92 (482)
27 3gir_A Aminomethyltransferase; 82.2 1.2 4.1E-05 40.5 4.4 73 103-185 164-239 (393)
28 2gag_A Heterotetrameric sarcos 76.2 8.9 0.0003 38.6 9.0 80 102-185 715-801 (965)
29 1vly_A SPOT PR51, unknown prot 71.7 6.4 0.00022 34.6 5.9 43 192-235 30-72 (338)
30 3ttg_A Putative aminomethyltra 71.3 3.9 0.00013 36.4 4.4 76 101-185 123-206 (355)
31 2k5k_A Uncharacterized protein 27.0 22 0.00076 24.2 1.1 15 15-29 40-54 (70)
32 1mji_A 50S ribosomal protein L 21.5 63 0.0021 26.0 3.0 24 114-137 91-114 (182)
33 1u07_A TONB protein; beta-hair 21.1 1.2E+02 0.0041 20.6 4.2 43 139-188 24-66 (90)
34 1iq4_A 50S ribosomal protein L 20.1 67 0.0023 25.8 2.9 24 114-137 88-111 (179)
No 1
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=100.00 E-value=1.3e-45 Score=368.46 Aligned_cols=223 Identities=18% Similarity=0.203 Sum_probs=199.9
Q ss_pred ceeeEEe-ecC----CccccccccCccCCcchhhccccccccceeeeeCCCC---CCCCCCCCCCCCccchHHHHHHCCC
Q 026126 8 ATTHLIV-GST----SRLHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPT---AVLPFDLSPPPIDHDLLETVKSEGA 79 (243)
Q Consensus 8 ~~~~~~~-~~~----~~~d~~Rf~~~~~~~~~~~~r~~e~~~~~y~~~~P~~---~~R~~r~sp~~~~~~l~~~~~~~GA 79 (243)
.+|+||+ |.+ +.+|++||.+.+.+++|+++|+.|+|++.|.++||++ ++|++|+|| ||++|+++||
T Consensus 371 ~la~li~~~~~~~dl~~~~~~Rf~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~tp------l~~~~~~~ga 444 (830)
T 1pj5_A 371 AMAELLTTGRSETDLGECDITRFEDVQLTPEYVSETSQQNFVEIYDVLHPLQPRLSPRNLRVSP------FHARHKELGA 444 (830)
T ss_dssp HHHHHHHHSSCSSCCTTTBGGGCCGGGGSHHHHHHHHHHHHHTTTCCCCTTCCCSSSCCSBCCT------THHHHHHTTE
T ss_pred HHHHHHhCCCCCccccccChhhhccccCCHHHHHHHHHHHHHHhhccCCCCCccccccccccCc------CHHHHHHcCC
Confidence 4567888 443 3388999998778999999999999999999999995 999999999 9999999999
Q ss_pred eEe---cCCcccccCC----------------------------hHHHHHHHhcCcEEEECCCCceEEEeCccHHHHHhh
Q 026126 80 KIS---GEGIVETFGN----------------------------DGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHN 128 (243)
Q Consensus 80 ~f~---~~~~p~~f~~----------------------------~~~E~~a~R~~vgl~DlS~~~~i~V~G~DA~~fLq~ 128 (243)
+|. +|++|.||.. +.+||+|+|++|+|||+|||++|+|+|+||.+|||+
T Consensus 445 ~~~~~~g~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~a~r~~~gl~d~s~~~~~~v~G~da~~fL~~ 524 (830)
T 1pj5_A 445 FFLEAGGWERPYWFEANAALLKEMPAEWLPPARDAWSGMFSSPIAAAEAWKTRTAVAMYDMTPLKRLEVSGPGALKLLQE 524 (830)
T ss_dssp EEEEETTEEEEEEEGGGGGGGGGSCGGGCCCCCCHHHHTTCCTHHHHHHHHHHHSCEEEECTTSCEEEEESTTHHHHHHH
T ss_pred EEEEECCEecccccCCcccccccccccccccccccccccccchhHHHHHHHHHhCeEEEEcCcEEEEEEECcCHHHHHHH
Confidence 986 6999999975 779999999999999999999999999999999999
Q ss_pred ccccCcCCCCCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCChHHHHHHHHhcccCC------CC-eEEEEecC
Q 026126 129 QSTANFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFA------DK-VEIQDITK 200 (243)
Q Consensus 129 l~t~dv~~l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~~~~~~~~L~~~~~~~------~~-V~i~d~t~ 200 (243)
++|||| .+++|+++||+|||++|+|+ |.+++|+++++|+| ++..+.+++||++++... .+ |+|+|+|+
T Consensus 525 ~~t~dv-~l~~g~~~y~~~l~~~G~i~~d~~v~~~~~~~~~l---~~~~~~~~~~l~~~~~~~~~~~~~~~~v~i~d~s~ 600 (830)
T 1pj5_A 525 LTTADL-AKKPGAVTYTLLLDHAGGVRSDITVARLSEDTFQL---GANGNIDTAYFERAARHQTQSGSATDWVQVRDTTG 600 (830)
T ss_dssp HBSSCC-CSCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEE---ECSSHHHHHHHHHHHHHHHHHSCTTCCCEEEECGG
T ss_pred hccccc-cCCCCcEEEeEEECCCCEEEEeEEEEEEeCCEEEE---EeCHHHHHHHHHHHhhhcccccCCCCeEEEEEccC
Confidence 999999 88999999999999999999 56888889988888 344567999999997531 15 99999999
Q ss_pred CEEEEEEECCcHHHHHhhccCCCCCC--CCCceeEEEEEeee
Q 026126 201 QTCLFVVVGPKSNQVMRDLNLGDLVG--EAYGTHRHYSINVF 240 (243)
Q Consensus 201 ~~~~l~v~GP~A~~vL~~l~~~dls~--~~~~~~~~~~i~~~ 240 (243)
++++|+||||+|+++|++++..|+++ |||++++.+.+++.
T Consensus 601 ~~~~~~l~Gp~a~~~l~~~~~~dl~~~~~~~~~~~~~~~~g~ 642 (830)
T 1pj5_A 601 GTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGI 642 (830)
T ss_dssp GEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETTE
T ss_pred CEEEEEEECcCHHHHHHHhcCcCCccccCCCceEEEEEECCE
Confidence 99999999999999999999888865 99999999888643
No 2
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=100.00 E-value=1.8e-41 Score=310.63 Aligned_cols=176 Identities=22% Similarity=0.308 Sum_probs=164.0
Q ss_pred CCCCCCCCCCCccchHHHHHHCCCeEe---cCCcccccCChHHHHHHHhcCcEEEECCCCceEEEeCccHHHHHhhcccc
Q 026126 56 VLPFDLSPPPIDHDLLETVKSEGAKIS---GEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTA 132 (243)
Q Consensus 56 ~R~~r~sp~~~~~~l~~~~~~~GA~f~---~~~~p~~f~~~~~E~~a~R~~vgl~DlS~~~~i~V~G~DA~~fLq~l~t~ 132 (243)
.|++|+|| ||++|.++||+|+ +|++|.+|+++.+||+|+|+++||||+|||++|+|+|+||.+|||+++||
T Consensus 2 ~~~~~~tp------l~~~~~~~ga~~~~~~g~~~p~~y~~~~~E~~a~r~~~gl~dls~~~~i~v~G~da~~fLq~l~t~ 75 (365)
T 1yx2_A 2 NAMLKRTP------LFDLYKEYGGKTIDFGGWELPVQFSSIKKEHEAVRTAAGLFDVSHMGEVEVSGNDSLSFLQRLMTN 75 (365)
T ss_dssp ---CBCCT------TGGGHHHHTCEEEEETTEEEEEESSCHHHHHHHHHHSEEEEECTTSEEEEEESTTHHHHHHHHBSS
T ss_pred CCccccCc------cHHHHHHcCCEEEeECCEEhhhhcCCHHHHHHHHHhCcEEEECCCeEEEEEECCCHHHHHHHhccc
Confidence 57899999 9999999999875 69999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCCEEEEEEECCc
Q 026126 133 NFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPK 211 (243)
Q Consensus 133 dv~~l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~ 211 (243)
||++|++|+++||+|||++|+|+ |.+++|+++|+|||+++++..+.+++||++++. .+|+|+|+++++++|+|+||+
T Consensus 76 dv~~l~~g~~~y~~~ln~~G~i~~d~~v~r~~~d~~ll~~~a~~~~~~~~~L~~~~~--~~V~i~d~s~~~~~lal~Gp~ 153 (365)
T 1yx2_A 76 DVSALTPGRAQYTAMCYPDGGTVDDLLIYQKGENRYLLVINASNIDKDLAWMKEHAA--GDVQIDNQSDQIALLAVQGPK 153 (365)
T ss_dssp CGGGCCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHTCC--SSCEEEECTTTEEEEEEESTT
T ss_pred ccccCCCCCEEEEEEECCCCeEEEEEEEEEEeCCEEEEEECcccHHHHHHHHHhhcc--CCeEEEECcCCEEEEEEECcC
Confidence 99999999999999999999999 567888889999999999999999999999986 489999999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCceeE-EEEEee
Q 026126 212 SNQVMRDLNLGDLVGEAYGTHR-HYSINV 239 (243)
Q Consensus 212 A~~vL~~l~~~dls~~~~~~~~-~~~i~~ 239 (243)
|+++|+++++.|++++||++++ .+.+++
T Consensus 154 a~~~L~~l~~~dl~~~~~~~~~~~~~~~g 182 (365)
T 1yx2_A 154 AEAILKNLTDADVSALKPFAFIDEADISG 182 (365)
T ss_dssp HHHHHHTTBSSCGGGCCTTBEEEEEEETT
T ss_pred HHHHHHHhhCCChhhCCcceeEEEEEECC
Confidence 9999999999899899999988 777754
No 3
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Probab=100.00 E-value=6.6e-41 Score=306.78 Aligned_cols=174 Identities=22% Similarity=0.305 Sum_probs=164.2
Q ss_pred CCCCCCCCccchHHHHHHCCCeEe---cCCcccccCChHHHHHHHhcCcEEEECCCCceEEEeCccHHHHHhhccccCcC
Q 026126 59 FDLSPPPIDHDLLETVKSEGAKIS---GEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFE 135 (243)
Q Consensus 59 ~r~sp~~~~~~l~~~~~~~GA~f~---~~~~p~~f~~~~~E~~a~R~~vgl~DlS~~~~i~V~G~DA~~fLq~l~t~dv~ 135 (243)
+|+|| ||++|+++||+|+ +|++|.+|+++.+||+|+|++++|||+|+|++|+|+|+||.+|||+++||||+
T Consensus 1 ~~~tp------l~~~~~~~ga~~~~~~g~~~p~~y~~~~~E~~a~r~~~gl~dls~~~~i~v~G~da~~fL~~l~t~dv~ 74 (364)
T 1wos_A 1 MKRTP------LFEKHVELGAKMVDFAGWEMPLYYTSIFEEVMAVRKSVGMFDVSHMGEFLVKGPEAVSFIDFLITNDFS 74 (364)
T ss_dssp CBCCT------THHHHHHTTCEEEEETTEEEEEESSCHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHBSSCCT
T ss_pred CCCCc------cHHHHHHCCCEEEeECCEEhhhhhCCHHHHHHHHHhCeEEEECCCcEEEEEECCCHHHHHHHhcccccc
Confidence 47788 9999999999986 68999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCCEEEEEEECCcHHH
Q 026126 136 ILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQ 214 (243)
Q Consensus 136 ~l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~A~~ 214 (243)
+|++|+++||+|||++|+|+ |.+++|+++|+|+|+++++..+.+++||++++.+ .+|+|+|+|+++++|+|+||+|++
T Consensus 75 ~l~~g~~~yt~~ln~~G~i~~d~~v~r~~~d~~ll~~~a~~~~~~~~~L~~~~~~-~~V~i~d~s~~~~~l~l~Gp~a~~ 153 (364)
T 1wos_A 75 SLPDGKAIYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSKN-FDVEVSNISDTTALIAFQGPKAQE 153 (364)
T ss_dssp TCCTTEEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHTTCTT-SSCEEEECGGGEEEEEEESTTHHH
T ss_pred cCCCCCEEEEEEECCCCeEEEEEEEEEEeCCEEEEEECcccHHHHHHHHHHhccC-CCEEEEECcCCEEEEEEECcCHHH
Confidence 99999999999999999999 5678888899999999999999999999999864 379999999999999999999999
Q ss_pred HHhhccCCCCCCCCCceeEEEEEee
Q 026126 215 VMRDLNLGDLVGEAYGTHRHYSINV 239 (243)
Q Consensus 215 vL~~l~~~dls~~~~~~~~~~~i~~ 239 (243)
+|+++++.|++++||++++.+.+++
T Consensus 154 ~L~~l~~~dl~~l~~~~~~~~~~~g 178 (364)
T 1wos_A 154 TLQELVEDGLEEIAYYSFRKSIVAG 178 (364)
T ss_dssp HHGGGBSSCSTTSCTTBEEEEEETT
T ss_pred HHHHhhCCCccccCccceEEEEECC
Confidence 9999999899999999998887754
No 4
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A*
Probab=100.00 E-value=2.3e-41 Score=311.92 Aligned_cols=174 Identities=17% Similarity=0.184 Sum_probs=157.3
Q ss_pred CCCCCCCCCCCCCccchHHHHHHCCCeEe---cCCcccccCChHHHHHHHhcCcEEEECCCCceEEEeCccHHHHHhhcc
Q 026126 54 TAVLPFDLSPPPIDHDLLETVKSEGAKIS---GEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQS 130 (243)
Q Consensus 54 ~~~R~~r~sp~~~~~~l~~~~~~~GA~f~---~~~~p~~f~~~~~E~~a~R~~vgl~DlS~~~~i~V~G~DA~~fLq~l~ 130 (243)
.++||+|+|| ||++|+++||+|. +|++|.+|+++.+||+|+|+++||||+|+|++|+|+|+||.+|||+++
T Consensus 9 ~~~~~~~~tp------l~~~h~~~Ga~~~~~~g~~~p~~y~~~~~E~~avr~~~gl~DlS~~g~i~v~G~DA~~fLq~l~ 82 (381)
T 1vlo_A 9 PALRAAQQTP------LYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRTDAGMFDVSHMTIVDLRGSRTREFLRYLL 82 (381)
T ss_dssp -------CCT------THHHHHHTTCEEEEETTEEEEEESSCHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHB
T ss_pred CCCCCcccCc------hHHHHHHcCCEEEeECCEEcccccCCHHHHHHHHHhCeEEEECCCcEEEEEECCCHHHHHHHhc
Confidence 3899999999 9999999999986 699999999999999999999999999999999999999999999999
Q ss_pred ccCcCCC-CCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCCEEEEEEE
Q 026126 131 TANFEIL-REGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVV 208 (243)
Q Consensus 131 t~dv~~l-~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~ 208 (243)
||||+++ ++|+++||+|||++|+|+ |.+++|+++|+|||+++++..+.+++||++++.. .+|+|+| ++++++|+||
T Consensus 83 t~dv~~l~~~g~~~yt~~ln~~G~i~~D~~v~r~~~d~~~lv~~a~~~~~~~~~L~~~~~~-~~V~i~d-s~~~~~lalq 160 (381)
T 1vlo_A 83 ANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEP-FGIEITV-RDDLSMIAVQ 160 (381)
T ss_dssp SSCGGGCCSTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHHHGG-GTCEEEE-CTTEEEEEEE
T ss_pred cccccccCCCCCEEEEEEECCCCcEEEEEEEEEEeCCEEEEEECcccHHHHHHHHHHhccC-CceEEEE-CCCEEEEEEE
Confidence 9999999 899999999999999999 5688888999999999999999999999999864 3799999 9999999999
Q ss_pred CCcHHHHHhhcc----CCCCCCCCCceeEEE
Q 026126 209 GPKSNQVMRDLN----LGDLVGEAYGTHRHY 235 (243)
Q Consensus 209 GP~A~~vL~~l~----~~dls~~~~~~~~~~ 235 (243)
||+|+++|++++ +.|++++||+++++.
T Consensus 161 GP~a~~~l~~l~~~~~~~~l~~~~~~~~~~~ 191 (381)
T 1vlo_A 161 GPNAQAKAATLFNDAQRQAVEGMKPFFGVQA 191 (381)
T ss_dssp STTHHHHHHTTCCHHHHHHHTTCCSSBEEEE
T ss_pred CccHHHHHHHhhccccCCCcccCCcceeEEe
Confidence 999999999998 567888999987653
No 5
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}
Probab=100.00 E-value=4.8e-41 Score=310.90 Aligned_cols=169 Identities=20% Similarity=0.225 Sum_probs=158.7
Q ss_pred CCCCCCCCCccchHHHHHHCCCeEe---cCCcccccC-ChHHHHHHHhcCcEEEECCCCceEEEeCccHHHHHhhccccC
Q 026126 58 PFDLSPPPIDHDLLETVKSEGAKIS---GEGIVETFG-NDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTAN 133 (243)
Q Consensus 58 ~~r~sp~~~~~~l~~~~~~~GA~f~---~~~~p~~f~-~~~~E~~a~R~~vgl~DlS~~~~i~V~G~DA~~fLq~l~t~d 133 (243)
++|+|| ||++|+++||+|+ +|++|.||+ ++.+||+|+|++|||||+|+|++|+|+|+||.+|||+++|||
T Consensus 32 ~~r~tp------l~~~h~~~GA~~~~~~gw~~P~~y~~~~~~E~~avR~~~gl~DvSh~g~i~V~G~DA~~fL~~l~tnd 105 (393)
T 3gir_A 32 SLKTLP------LYELHEKAGAKFGAFAGWRMPLTYPLGVLKEHLHTRAHAGLFDISHMKLIAVEGPKAVEFLSYALPVD 105 (393)
T ss_dssp CCEECT------THHHHHHTTCEEEEETTEEEEEECTTCHHHHHHHHHHSEEEEECTTSEEEEEESTTHHHHHHHHSSSC
T ss_pred ccccCc------chHHHHHcCCEEEeeCCEecchhhcCCHHHHHHHHHhCeEEEeCCCcEEEEEECCCHHHHhhhhcccc
Confidence 689999 9999999999985 699999999 999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCCEEEEEEECCcH
Q 026126 134 FEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKS 212 (243)
Q Consensus 134 v~~l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~A 212 (243)
|++|++|+++||+|||++|+|+ |.+++|+++|+|||+++++..+.+++||++++.. .+|+| +++++++|+||||+|
T Consensus 106 v~~l~~G~~~yt~~ln~~G~i~dD~~V~rl~~d~~~lv~~a~~~~~~~~~L~~~~~~-~~V~i--~~~~~a~lalqGP~A 182 (393)
T 3gir_A 106 AALLKIGQSRYSYLLNERAGILDDLILTRLAECRFMLVANAGNAQADFAELEKRAFG-FECQV--IALERVLLALQGPQA 182 (393)
T ss_dssp TTTSCTTBEEEEEEECTTCCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHHTTT-SSCEE--EECCCEEEEEESTTH
T ss_pred cccCCCCcEEEEEEECCCCcEEEEEEEEEecCCEEEEEECchhHHHHHHHHHhhccC-CceEE--EECCEEEEEEECccH
Confidence 9999999999999999999999 5688888899999999999999999999999874 48999 678899999999999
Q ss_pred HHHHhhccCCCCCCCCCceeEEEE
Q 026126 213 NQVMRDLNLGDLVGEAYGTHRHYS 236 (243)
Q Consensus 213 ~~vL~~l~~~dls~~~~~~~~~~~ 236 (243)
+++|+++++ |++++||+++++++
T Consensus 183 ~~vL~~l~~-~l~~~~~~~~~~~~ 205 (393)
T 3gir_A 183 AAVLADAGL-PGNELLFMQGFEPQ 205 (393)
T ss_dssp HHHHHHTTC-CCTTCCTTBEECSS
T ss_pred HHHHHHhcC-chhhcccceeEEEE
Confidence 999999998 89999999887543
No 6
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A*
Probab=100.00 E-value=2.6e-41 Score=310.43 Aligned_cols=181 Identities=11% Similarity=0.137 Sum_probs=161.7
Q ss_pred ceeeeeCCCCCCCCCCCCCCCCccchHHHHHHCCCe-Ee---cCCcccccCChHHHHHHHhcCcEEEECCCCceEEEeCc
Q 026126 45 RRRSASIPPTAVLPFDLSPPPIDHDLLETVKSEGAK-IS---GEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGD 120 (243)
Q Consensus 45 ~~y~~~~P~~~~R~~r~sp~~~~~~l~~~~~~~GA~-f~---~~~~p~~f~~~~~E~~a~R~~vgl~DlS~~~~i~V~G~ 120 (243)
++|+|. ++|++|+|| ||++|+++||+ |+ +|++|.+|+++.+||+|+|++|||||+|||++|+|+|+
T Consensus 2 ~~~~~~----~~r~~~~tp------l~~~h~~~Ga~~~~~~~gw~~P~~y~~~~~E~~avR~~~glfDvSh~g~i~v~G~ 71 (369)
T 3tfi_A 2 KNFSIA----KSRRLRSTP------YTSRIEKQGVTAYTIYNHMLLPAAFGSIEDSYKHLKEHVQIWDVAAERQVEISGK 71 (369)
T ss_dssp CSCEEC----CBTTBBCCT------THHHHTTTTCCEEEEETTEEEEEESSCHHHHHHHHHHSCEEEECTTSCEEEEEST
T ss_pred CCcccc----cccccCCCc------cHHHHHHcCCeEEeccCCEEcccccCCHHHHHHHHHcCeEEEeCCCCEEEEEECC
Confidence 345555 899999999 99999999998 55 47799999999999999999999999999999999999
Q ss_pred cHHHHHhhccccCcCCCCCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCChHHHHHHHHhccc-CCCCeEEEEe
Q 026126 121 DRIQFLHNQSTANFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVF-FADKVEIQDI 198 (243)
Q Consensus 121 DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~~~~~~~~L~~~~~-~~~~V~i~d~ 198 (243)
||.+|||+++||||++|++|+++||+|||++|+|+ |.+++|+++|+|||++++.. +..||+++.. ...+|+|++
T Consensus 72 DA~~fL~~l~t~dv~~L~~G~~~yt~~ln~~G~i~dD~~v~r~~ed~~~l~~~~~~---~~~~l~~~~~~~~~~V~i~~- 147 (369)
T 3tfi_A 72 DSAELVQLMTCRDLSKSKIGRCYYCPIIDENGNLVNDPVVLKLDENKWWISIADSD---VIFFAKGLASGHKFDVKIVE- 147 (369)
T ss_dssp THHHHHHHHBSSCCTTCCTTBEEECCEECTTSCEEECCEEEEEETTEEEEECCSSC---HHHHHHHHHHHHTCCCEEEC-
T ss_pred CHHHHHhhhcccccccCCCCcEEEEEEECCCCCEEEEEEEEEecCCEEEEEECcHH---HHHHHHHhhhhcCCeEEEEE-
Confidence 99999999999999999999999999999999999 55888999999999887653 5678887752 134799985
Q ss_pred cCCEEEEEEECCcHHHHHhhccCCCCCCCCCceeEEEEEeee
Q 026126 199 TKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSINVF 240 (243)
Q Consensus 199 t~~~~~l~v~GP~A~~vL~~l~~~dls~~~~~~~~~~~i~~~ 240 (243)
+++++|+||||+|+++|+++++.|++++||++++++++++.
T Consensus 148 -~~~a~lalqGP~A~~~L~~l~~~~l~~l~~~~~~~~~i~g~ 188 (369)
T 3tfi_A 148 -PVVDIMAIQGPKSFALMEKVFGKKITELKFFGFDYFDFEGT 188 (369)
T ss_dssp -CSCEEEEEESTTHHHHHHHHHCGGGGGCCTTBEEEEEETTE
T ss_pred -CCEEEEEEECccHHHHHHhhcCCchhhCCCceEEEEEECCe
Confidence 68999999999999999999988999999999999888653
No 7
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Probab=100.00 E-value=4.4e-40 Score=305.17 Aligned_cols=176 Identities=19% Similarity=0.184 Sum_probs=166.0
Q ss_pred CCCCCCCCCCccchHHHHHHCCCeEe---cCCcccccCChHHHHHHHhcCcEEEECCCCceEEEeCccHHHHHhhccccC
Q 026126 57 LPFDLSPPPIDHDLLETVKSEGAKIS---GEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTAN 133 (243)
Q Consensus 57 R~~r~sp~~~~~~l~~~~~~~GA~f~---~~~~p~~f~~~~~E~~a~R~~vgl~DlS~~~~i~V~G~DA~~fLq~l~t~d 133 (243)
+|+|+|| ||++|+++||+|+ +|++|.+|+++.+||+|+|++++|+|+|+|++|+|+|+||.+|||+++|||
T Consensus 3 ~~~~~tp------l~~~~~~~ga~~~~~~g~~~p~~y~~~~~E~~a~r~~~gl~dls~~~~i~v~G~Da~~fLq~l~t~d 76 (401)
T 1v5v_A 3 QMVKRVH------IFDWHKEHARKIEEFAGWEMPIWYSSIKEEHLAVRNAVGIFDVSHMGEIVFRGKDALKFLQYVTTND 76 (401)
T ss_dssp CCCBCCT------THHHHHHHCSEEEEETTEEEEEESSCHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHSSSC
T ss_pred CccccCc------hHHHHHHcCCEEEEECCEEechhcCCHHHHHHHHHhCEEEEECCCcEEEEEECCCHHHHHHHhhccc
Confidence 6889999 9999999999986 689999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCChHHHHHHH----Hhcc--cCCCCeEEEEecCCEEEEE
Q 026126 134 FEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEML----NKYV--FFADKVEIQDITKQTCLFV 206 (243)
Q Consensus 134 v~~l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~~~~~~~~L----~~~~--~~~~~V~i~d~t~~~~~l~ 206 (243)
|+++++|+++||++||++|+|+ |.+++|+++++|||+++++..+.+++|| ++++ .. .+|+|+|+|+++++|+
T Consensus 77 v~~l~~g~~~yt~~ln~~G~i~~D~~v~r~~~d~~ll~~~a~~~~~~~~~L~~~~~~~~~~~~-~~V~i~d~s~~~~~la 155 (401)
T 1v5v_A 77 ISKPPAISGTYTLVLNERGAIKDETLVFNMGNNEYLMICDSDAFEKLYAWFTYLKRTIEQFTK-LDLEIELKTYDIAMFA 155 (401)
T ss_dssp TTSSCSSEEEEEEEECTTSCEEEEEEEEEEETTEEEEEECTTTHHHHHHHHHHHHHHHHTTSC-CCCEEEECTTTEEEEE
T ss_pred cCcCCCCCEEEEEEECCCCcEEEEEEEEEecCCEEEEEECcccHHHHHHHHHHHHHhhhccCC-CcEEEEECcCCEEEEE
Confidence 9999999999999999999999 5678888999999999999999999999 8887 53 4899999999999999
Q ss_pred EECCcHHHHHhhccCCCCCCCCCceeEEEEEee
Q 026126 207 VVGPKSNQVMRDLNLGDLVGEAYGTHRHYSINV 239 (243)
Q Consensus 207 v~GP~A~~vL~~l~~~dls~~~~~~~~~~~i~~ 239 (243)
|+||+|+++|+++++.|++.+||++++.+.+++
T Consensus 156 l~GP~a~~vL~~l~~~dl~~~~~~~~~~~~~~g 188 (401)
T 1v5v_A 156 VQGPKARDLAKDLFGIDINEMWWFQARWVELDG 188 (401)
T ss_dssp EESTTHHHHHHHHHSCCGGGSCTTBEEEEEETT
T ss_pred EECccHHHHHHHhhCCCchhcCccceEEEEeCC
Confidence 999999999999999899899999999888764
No 8
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*
Probab=100.00 E-value=2.2e-40 Score=304.48 Aligned_cols=175 Identities=16% Similarity=0.231 Sum_probs=162.0
Q ss_pred CCCCCCCCCCccchHHHHHHCCCeEe---cCCcccccC-ChHHHHHHHhcCcEEEECCCCceEEEeCccHHHHHhhcccc
Q 026126 57 LPFDLSPPPIDHDLLETVKSEGAKIS---GEGIVETFG-NDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTA 132 (243)
Q Consensus 57 R~~r~sp~~~~~~l~~~~~~~GA~f~---~~~~p~~f~-~~~~E~~a~R~~vgl~DlS~~~~i~V~G~DA~~fLq~l~t~ 132 (243)
.++|+|| ||++|+++||+|. +|++|.||+ +..+||+|+|++++|||+|||++|+|+|+||.+|||+++||
T Consensus 3 ~~~~~tp------l~~~~~~~Ga~~~~~~g~~~p~~y~~~~~~E~~a~r~~~gl~Dls~~g~i~v~G~da~~fLq~l~t~ 76 (375)
T 1wsr_A 3 EVLRRTP------LYDFHLAHGGKMVAFAGWSLPVQYRDSHTDSHLHTRQHCSLFDVSHMLQTKILGSDRVKLMESLVVG 76 (375)
T ss_dssp -CCBCCT------THHHHHHTTCEEEEETTEEEEEECSSCHHHHHHHHHHSEEEEECTTSEEEEEESTTHHHHHHHHBSS
T ss_pred CccccCc------cHHHHHHCCCEEEEECCEEechhhCCCHHHHHHHHHhCcEEEECCceEEEEEECCCHHHHHHHhccc
Confidence 5889999 9999999999986 689999998 78999999999999999999999999999999999999999
Q ss_pred CcCCCCCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCChHHHHHHHHhcccC----CCCeEEEEecCCEEEEEE
Q 026126 133 NFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFF----ADKVEIQDITKQTCLFVV 207 (243)
Q Consensus 133 dv~~l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~~~~~~~~L~~~~~~----~~~V~i~d~t~~~~~l~v 207 (243)
||+++++|+++||+|||++|+|+ |.+++|+++|+|||+++++..+.+++||++++.. ..+|+|+|+ ++++|+|
T Consensus 77 dv~~l~~g~~~y~~~ln~~G~i~~D~~v~r~~~d~~~lv~~a~~~~~~~~~L~~~~~~~~~~~~~V~i~d~--~~~~lal 154 (375)
T 1wsr_A 77 DIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKDLALMQDKVRELQNQGRDVGLEVL--DNALLAL 154 (375)
T ss_dssp CCTTCCTTEEEEEEEECTTCCEEEEEEEEECTTSSEEEEECGGGHHHHHHHHHHHHHHHHHTTCCCEEEEC--CCEEEEE
T ss_pred ccCcCCCCCEEEEEEECCCCeEEEEEEEEEEcCCEEEEEeCCccHHHHHHHHHHhhhhhcCCCCeEEEEEC--CEEEEEE
Confidence 99999999999999999999999 5577788888999999999999999999999753 147999998 6899999
Q ss_pred ECCcHHHHHhhccCCCCCCCCCceeEEEEEee
Q 026126 208 VGPKSNQVMRDLNLGDLVGEAYGTHRHYSINV 239 (243)
Q Consensus 208 ~GP~A~~vL~~l~~~dls~~~~~~~~~~~i~~ 239 (243)
|||+|+++|+++++.|+++|||++++.+.+++
T Consensus 155 ~GP~a~~vL~~l~~~dl~~l~~~~~~~~~~~g 186 (375)
T 1wsr_A 155 QGPTAAQVLQAGVADDLRKLPFMTSAVMEVFG 186 (375)
T ss_dssp ESTTHHHHHHTTCSSCGGGCCTTBEEEEEETT
T ss_pred ECcCHHHHHHhhcCcchhhCCccceEEEEECC
Confidence 99999999999998899999999999888764
No 9
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=100.00 E-value=3.7e-39 Score=326.86 Aligned_cols=189 Identities=19% Similarity=0.246 Sum_probs=173.9
Q ss_pred ceeeeeC-CCC----CCC-------CCCCCCCCCccchHHHHHHCCCeEe---cCCcccccCC--------hHHHHHHHh
Q 026126 45 RRRSASI-PPT----AVL-------PFDLSPPPIDHDLLETVKSEGAKIS---GEGIVETFGN--------DGEALDAAD 101 (243)
Q Consensus 45 ~~y~~~~-P~~----~~R-------~~r~sp~~~~~~l~~~~~~~GA~f~---~~~~p~~f~~--------~~~E~~a~R 101 (243)
.+|.+|| |.+ ++| |+|+|| ||++|+++||+|+ +|++|.||.. +.+||+|+|
T Consensus 548 ~~~r~p~~P~~~~~la~r~~~~~~~~~r~tp------l~~~~~~~Ga~~~~~~gw~~p~~y~~~g~~~~~~~~~E~~avr 621 (965)
T 2gag_A 548 TTFRAPYTPVAFAALAGRNRGDQLDPARITA------MHSWHLSHGAEFEDVGQWKRPWYYPQAGETMDQAVYRESKAVR 621 (965)
T ss_dssp CCCCSCSSCEEHHHHHTTCCGGGGSCCBCCT------THHHHHHTTCEEEEETTEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ceecCCccCcccccccccccccccCCcccCC------CHHHHHHcCCEEeeECCEeeehhhCCCCcccchhHHHHHHHHH
Confidence 5688999 874 888 999999 9999999999986 6999999984 689999999
Q ss_pred cCcEEEECCCCceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCChHHHH
Q 026126 102 NGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSIT 180 (243)
Q Consensus 102 ~~vgl~DlS~~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~~~~~~ 180 (243)
+++||||+|||++|+|+|+||.+|||+++||||++|++|+++|++|||++|+|+ |.+++|+++|+|||+++++..+.++
T Consensus 622 ~~~gl~D~S~~g~i~v~G~da~~fL~~l~t~dv~~l~~g~~~y~~~l~~~G~i~~D~~v~r~~~~~~~l~~~~~~~~~~~ 701 (965)
T 2gag_A 622 DSVGMLDATTLGKIEIRGKDAAEFLNRIYTNGYTKLKVGMGRYGVMCKADGMIFDDGVTLRLAEDRFLLHTTTGGAADVL 701 (965)
T ss_dssp HSCEEEECTTSEEEEEESTTHHHHHHHHBSSCCTTCCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECTTTHHHHH
T ss_pred hCeEEEeCCceEEEEEeCcCHHHHHHHhhccCCCcCCCCCEEEEEEECCCCcEEEEEEEEEEeCCEEEEEECcccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 5688899999999999999999999
Q ss_pred HHHHhccc--C-CCCeEEEEecCCEEEEEEECCcHHHHHhhcc-CCCCCC--CCCceeEEEEE-ee
Q 026126 181 EMLNKYVF--F-ADKVEIQDITKQTCLFVVVGPKSNQVMRDLN-LGDLVG--EAYGTHRHYSI-NV 239 (243)
Q Consensus 181 ~~L~~~~~--~-~~~V~i~d~t~~~~~l~v~GP~A~~vL~~l~-~~dls~--~~~~~~~~~~i-~~ 239 (243)
+||++++. + ..+|+|+|+|+++++|+||||+|+++|++++ +.|+++ |||++++++++ ++
T Consensus 702 ~~l~~~~~~~~~~~~V~i~d~s~~~~~lal~GP~a~~~l~~~~~~~dl~~~~~~~~~~~~~~~~~g 767 (965)
T 2gag_A 702 DWLEEWLQTEWPDLDVTCTSVTEQLATVAVVGPRSRDVIAKLASTVDVSNEGFKFMAFKDVVLDSG 767 (965)
T ss_dssp HHHHHHHHHTCTTSCCEEEECTTTEEEEEEESTTHHHHHHHHCTTSCCSTTTSCTTBEEEEECTTS
T ss_pred HHHHHHHHhcCCCCcEEEEEccCCEEEEEEECcCHHHHHHHhhCCCCCccccCCCceeEEEEEcCC
Confidence 99999973 2 2479999999999999999999999999998 568854 99999999888 54
No 10
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum}
Probab=99.98 E-value=3.9e-32 Score=248.19 Aligned_cols=141 Identities=21% Similarity=0.239 Sum_probs=127.2
Q ss_pred CChHHH---HHHHhcCcE-EEECCCCceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEEEE-EEEEEeCC
Q 026126 91 GNDGEA---LDAADNGVA-AVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDI-AHAWIMKN 165 (243)
Q Consensus 91 ~~~~~E---~~a~R~~vg-l~DlS~~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~-~v~~~~~d 165 (243)
+++.+| ++|+|++|| |||+|+|++|+|+|+||.+|||+|+||||++|++|+++|++|||++|+|+|+ +++|+ +|
T Consensus 20 ~~~~~eh~e~~avr~~~g~l~DlS~~g~i~v~G~DA~~fLq~l~tndv~~l~~g~~~y~~~ln~~G~i~~D~~v~r~-~d 98 (355)
T 3ttg_A 20 QGMLTEVSDTRIAHKKFGLFYPSVSRPSIFVEGEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFDAWCGNF-ED 98 (355)
T ss_dssp CCCCGGGTTHHHHHHSCEEECCSSCCCCEEEESTTHHHHHHTTBSSCCSSCCTTBEEEEEEECTTCCEEEEEEEEEE-TT
T ss_pred ccchHHHHHHHHHHhcCeEEEeCCCcEEEEEECCCHHHHHhhhhhhccccCCCCCEEEEEEECCCceEEEEEEEEEE-CC
Confidence 355555 499999999 9999999999999999999999999999999999999999999999999955 55555 68
Q ss_pred EEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCCEEEEEEECCcHHHHHhhccCCCCCCCCCcee
Q 026126 166 AVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTH 232 (243)
Q Consensus 166 ~f~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~A~~vL~~l~~~dls~~~~~~~ 232 (243)
+|||+++++..+.+++||++|+.+..+|+|+|+|+++++|+||||+|+++|+++++.++++++|+..
T Consensus 99 ~~~lv~~a~~~~~~~~~L~~~~~~~~~V~i~d~s~~~~~lalqGP~a~~~l~~l~~~~l~~~~~~~~ 165 (355)
T 3ttg_A 99 KIALFPPAGTREEFVNHLKKYLFFRTKAKITDMSDHFREIRLVGPETISVLLSLFDNNFSGSSFRML 165 (355)
T ss_dssp EEEEECCTTCHHHHHHHHHHTCCTTCCCEEEECGGGEEEEEEESTTHHHHHHHHSSSCCCSSEEEEC
T ss_pred EEEEEECcccHHHHHHHHHHhcccCCCeEEEECcCCEEEEEEECCcHHHHHHHhccCCCccCcceee
Confidence 9999999999999999999998732489999999999999999999999999998888888877643
No 11
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A
Probab=99.95 E-value=5.7e-27 Score=212.65 Aligned_cols=124 Identities=15% Similarity=0.148 Sum_probs=110.9
Q ss_pred CcEEEECCCCceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEEEE-EEEEEeCCEEEEEECCCChHHHHH
Q 026126 103 GVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDI-AHAWIMKNAVILVVSPLTCSSITE 181 (243)
Q Consensus 103 ~vgl~DlS~~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~-~v~~~~~d~f~l~~~~~~~~~~~~ 181 (243)
.|++||+|+|++|+|+|+||.+|||+++||||.++++|+++||+|||++|+|+|+ +++|.+ ++|+|+++++..+.+++
T Consensus 30 ~~~l~dlS~~~~i~v~G~DA~~fLq~l~tndv~~l~~g~~~yt~~ln~~G~i~~D~~v~r~~-~~~~lv~~a~~~~~~~~ 108 (338)
T 1vly_A 30 PLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRDG-DGFAWIERRSVREPQLT 108 (338)
T ss_dssp CSEEEECTTEEEEEEESTTHHHHHHTTBSSCGGGCCTTCEEEEEEECTTSCEEEEEEEEEET-TEEEEEEEHHHHHHHHH
T ss_pred ceEEEECCCcEEEEEECCCHHHHhcchhhhcccccCCCceEEEEEECCCCCEEEEEEEEEeC-CcEEEEecchhhHHHHH
Confidence 5899999999999999999999999999999999999999999999999999955 555554 59999999999999999
Q ss_pred HHHhcccCCCCeEEEEecCCEEEEEEECCcHHHHHhhccC-CCCCCCCC
Q 026126 182 MLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNL-GDLVGEAY 229 (243)
Q Consensus 182 ~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~A~~vL~~l~~-~dls~~~~ 229 (243)
||++|+.+ .+|+|++. +++++++||||+|+++|++++. .+...++|
T Consensus 109 ~L~~~~~~-~~V~i~~~-~~~~~lal~Gp~a~~~l~~~~~~~~~~~~~~ 155 (338)
T 1vly_A 109 ELKKYAVF-SKVTIAPD-DERVLLGVAGFQARAALANLFSELPSKEKQV 155 (338)
T ss_dssp HHHTTCSS-SSCEEEEE-CSSEEEEEESTTHHHHHHTTSSCCCBTTBCE
T ss_pred HHHHhhhh-cceEEEEc-CceEEEEEECCcHHHHHHhhcccCCCcccce
Confidence 99999865 48999987 8899999999999999999975 34444665
No 12
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C*
Probab=99.90 E-value=5.7e-24 Score=180.65 Aligned_cols=129 Identities=11% Similarity=0.135 Sum_probs=105.5
Q ss_pred HhcCcEEEECCCCceEEEeCccHHHHH---hhccccCcCCCCCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCC
Q 026126 100 ADNGVAAVDLSHFGRIRVSGDDRIQFL---HNQSTANFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLT 175 (243)
Q Consensus 100 ~R~~vgl~DlS~~~~i~V~G~DA~~fL---q~l~t~dv~~l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~ 175 (243)
.+++|||||+|+||++.|+|+||.+|| +.+++.+++. ++|.+.+ + + |.+++|+++|+|+|++++
T Consensus 26 ~~~~vglfDvShmg~~~v~G~~a~~~l~~l~~~~~~~l~~-~~g~~~~--~-------~dDl~v~rl~~d~~llv~na-- 93 (206)
T 1x31_C 26 GERAVTLREVAFTTQLGLRAVPGSTGHAALAAATGVGLPA-AVGEVAG--D-------VSGTAVLWLGPDEFLLAAEE-- 93 (206)
T ss_dssp STTCBEEEECCSCEEEEEECCTTSHHHHHHHHHSSSCCCC-STTBEEE--C-------TTSCEEEEEETTEEEEEESS--
T ss_pred CCCcEEEEECCCCcEEEEEeCChhHHHHHHHHHhCcCCCC-CCCEEEE--e-------cCCEEEEEEcCCEEEEEcCc--
Confidence 457899999999999999999999555 4444444442 3343332 1 6 568999999999999988
Q ss_pred hHHHHHHHHhcccCCCCeEEEEecCCEEEEEEECCcHHHHHhhccCCCCCC--CCCceeEEEEEeeee
Q 026126 176 CSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVG--EAYGTHRHYSINVFT 241 (243)
Q Consensus 176 ~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~A~~vL~~l~~~dls~--~~~~~~~~~~i~~~~ 241 (243)
.+++.+||++++.. .+|.++|+|+++++|+||||+|+++|+++++.|+++ |||++++++.|++.+
T Consensus 94 ~~~d~~~l~~~l~~-~~v~v~d~s~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v~g~~ 160 (206)
T 1x31_C 94 NPALLDTLQGALGQ-EPGQVLDLSANRSVLQLEGPAAALVLRKSCPADLHPREFGVNRAITTSLANIP 160 (206)
T ss_dssp CTHHHHHHHHHHTT-SSSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCCTTTSCTTEEEEEEETTEE
T ss_pred hHHHHHHHHHhcCc-CcEEEEECCCCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEEcCeE
Confidence 47899999998742 358999999999999999999999999999989997 999999999887643
No 13
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=99.89 E-value=5.2e-23 Score=175.25 Aligned_cols=129 Identities=13% Similarity=0.154 Sum_probs=108.2
Q ss_pred HhcCcEEEECCCCceEEEeCcc---HHHHHhhccccCcCCCCCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCC
Q 026126 100 ADNGVAAVDLSHFGRIRVSGDD---RIQFLHNQSTANFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLT 175 (243)
Q Consensus 100 ~R~~vgl~DlS~~~~i~V~G~D---A~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~ 175 (243)
.|++|||||+|+||++.|+|+| +.++|+.+++.+++. +.|.+.++ + |.+++|+++|+|+|++++
T Consensus 28 ~r~~vglfDvShmg~~~v~G~~a~~~l~~l~~~~g~~l~~-~~g~v~~~---------~dDl~v~rl~~d~~llv~na-- 95 (210)
T 2gag_C 28 VAGRVELREIAFTTQISLRCAPGTQAHAALAAATGAGLPA-KVGEVAGE---------AQGTAVLWLAPDEFLATSAE-- 95 (210)
T ss_dssp BTTTBEEEECCSCEEEEEECCTTSHHHHHHHHHHSSCCCC-STTBCEEC---------TTSCEEEEEETTEEEEEESS--
T ss_pred ccCcEEEEECCCCcEEEEEeCChhHHHHHHHHHhCcCCCC-CCCEEEEc---------cCCEEEEEEcCCEEEEEeCc--
Confidence 7999999999999999999999 456666777777764 34443221 4 568999999999999988
Q ss_pred hHHHHHHHHhcccCCCCeEEEEecCCEEEEEEECCcHHHHHhhccCCCCCC--CCCceeEEEEEeeee
Q 026126 176 CSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVG--EAYGTHRHYSINVFT 241 (243)
Q Consensus 176 ~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~A~~vL~~l~~~dls~--~~~~~~~~~~i~~~~ 241 (243)
.+++++||++++.. .+|.++|+|+++++|+||||+|+++|+++++.|+++ |||++++++.|++++
T Consensus 96 ~~~d~~~l~~~l~~-~~v~v~d~s~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v~g~~ 162 (210)
T 2gag_C 96 NTELGGVLSAALGD-APGQVVDLSANRSVLELTGPDAPLVLRKSCPADLHPRAFAVNQAIVTSVANIP 162 (210)
T ss_dssp CTTHHHHHHHHHTT-SSSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETTEE
T ss_pred HHHHHHHHHHhcCc-CCEEEEECCCCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEECCEE
Confidence 46789999998742 369999999999999999999999999999989996 999999999987643
No 14
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=97.86 E-value=0.00016 Score=60.80 Aligned_cols=80 Identities=18% Similarity=0.091 Sum_probs=69.4
Q ss_pred CcEEEECCC-CceEEEeCccHHHHHhhccccCcCC--CCCCceEEeEeecCCCcEEEEEEEEEeCCEEEEEECCCChHHH
Q 026126 103 GVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFEI--LREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSI 179 (243)
Q Consensus 103 ~vgl~DlS~-~~~i~V~G~DA~~fLq~l~t~dv~~--l~~G~~~yt~~Ln~~G~i~d~~v~~~~~d~f~l~~~~~~~~~~ 179 (243)
.+.+.|+|. ++.|.|.||.|.+.|+.++..|+.. ++.+++..+.+ ++ +++++.|.+|+.|-|.++.+.+..+
T Consensus 111 ~v~v~d~s~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v----~g-~~v~v~RtGEdGfEI~v~~~~A~~l 185 (210)
T 2gag_C 111 PGQVVDLSANRSVLELTGPDAPLVLRKSCPADLHPRAFAVNQAIVTSV----AN-IPVLLWRTGEQAWRIMPRASFTEHT 185 (210)
T ss_dssp SSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEE----TT-EEEEEEEEETTEEEEEEBGGGHHHH
T ss_pred CEEEEECCCCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEE----CC-EEEEEEEeCCCEEEEEEEHHHHHHH
Confidence 588999998 8999999999999999999889875 78898887655 33 3677889999999999999999999
Q ss_pred HHHHHhcc
Q 026126 180 TEMLNKYV 187 (243)
Q Consensus 180 ~~~L~~~~ 187 (243)
+++|....
T Consensus 186 w~~Ll~a~ 193 (210)
T 2gag_C 186 VHWLVDAM 193 (210)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99997653
No 15
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C*
Probab=97.79 E-value=0.00017 Score=60.43 Aligned_cols=80 Identities=13% Similarity=0.077 Sum_probs=69.1
Q ss_pred CcEEEECCC-CceEEEeCccHHHHHhhccccCcCC--CCCCceEEeEeecCCCcEEEEEEEEEeCCEEEEEECCCChHHH
Q 026126 103 GVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFEI--LREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSI 179 (243)
Q Consensus 103 ~vgl~DlS~-~~~i~V~G~DA~~fLq~l~t~dv~~--l~~G~~~yt~~Ln~~G~i~d~~v~~~~~d~f~l~~~~~~~~~~ 179 (243)
.+.+.|+|. ++.|.|.||.|.+.|+.++..|+.. ++.+++..+.+ ++ +.+++.|.+|+.|-|.++.+.+..+
T Consensus 109 ~v~v~d~s~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v----~g-~~v~i~RtgEdGfEI~v~~~~A~~l 183 (206)
T 1x31_C 109 PGQVLDLSANRSVLQLEGPAAALVLRKSCPADLHPREFGVNRAITTSL----AN-IPVLLWRTGEQSWRILPRASFTEHT 183 (206)
T ss_dssp SSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCCTTTSCTTEEEEEEE----TT-EEEEEEEEETTEEEEECBGGGHHHH
T ss_pred cEEEEECCCCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEE----cC-eEEEEEEcCCCeEEEEEEHHHHHHH
Confidence 478999998 8999999999999999999889875 78898877655 23 3678899999999999999999999
Q ss_pred HHHHHhcc
Q 026126 180 TEMLNKYV 187 (243)
Q Consensus 180 ~~~L~~~~ 187 (243)
+++|....
T Consensus 184 w~~L~~ag 191 (206)
T 1x31_C 184 VHWLIDAM 191 (206)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99997643
No 16
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=96.25 E-value=0.00029 Score=66.14 Aligned_cols=60 Identities=12% Similarity=0.120 Sum_probs=46.6
Q ss_pred eeeEEeecCCc--ccccc--ccCc-cCCcchhhccccccccceeeeeCCCC---CCCCCCCCCCCCccchHHHHH
Q 026126 9 TTHLIVGSTSR--LHNTR--TTKF-FQNGVVLTQKKTLSLRRRRSASIPPT---AVLPFDLSPPPIDHDLLETVK 75 (243)
Q Consensus 9 ~~~~~~~~~~~--~d~~R--f~~~-~~~~~~~~~r~~e~~~~~y~~~~P~~---~~R~~r~sp~~~~~~l~~~~~ 75 (243)
+++|+-|.++. +|.|| |... +.+++| .+|..|.|++.|.++||++ ++||+|+|| ||+++.
T Consensus 428 l~~~~~g~~~~~~l~~r~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~r~~~~~~------l~~~~~ 495 (497)
T 2bry_A 428 VKRWAEGAGPLEVLAERESLYQLLSQTSPEN-MHRNVAQYGLDPATRYPNLNLRAVTPNQVQD------LYDMMD 495 (497)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHTTGGGCCTTT-SCSCGGGCCSSGGGTSSSCCTTSSCGGGGGG------GEEECS
T ss_pred HHHHhCCCCccchhhhHHHHhhhhhhcCHHH-HhhhHHhhcCCCcCcCCCcccccccCCccCc------cccccC
Confidence 44552264433 78999 6542 347888 9999999999999999994 999999999 998763
No 17
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Probab=93.84 E-value=0.23 Score=44.48 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=61.9
Q ss_pred cCcEEEECCC-CceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEEEEEEEEE---eCCEEEEEECCCChH
Q 026126 102 NGVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWI---MKNAVILVVSPLTCS 177 (243)
Q Consensus 102 ~~vgl~DlS~-~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~~v~~~---~~d~f~l~~~~~~~~ 177 (243)
..|-+.|+|. +..+.|.||.|.+.|+.++..|+..++.+.+..+.+ .| ...++.|. +++.|.|+++.+.+.
T Consensus 130 ~~V~i~d~s~~~~~l~l~Gp~a~~~L~~l~~~dl~~l~~~~~~~~~~---~g--~~~~i~R~g~tge~G~ei~~~~~~a~ 204 (364)
T 1wos_A 130 FDVEVSNISDTTALIAFQGPKAQETLQELVEDGLEEIAYYSFRKSIV---AG--VETLVSRTGYTGEDGFELMLEAKNAP 204 (364)
T ss_dssp SSCEEEECGGGEEEEEEESTTHHHHHGGGBSSCSTTSCTTBEEEEEE---TT--EEEEEESCCSSSSSEEEEEEEGGGHH
T ss_pred CCEEEEECcCCEEEEEEECcCHHHHHHHhhCCCccccCccceEEEEE---CC--eEEEEEecCCCCCCeEEEEEeHHHHH
Confidence 3689999976 799999999999999999988888777777655433 12 23456665 478999999999888
Q ss_pred HHHHHHHh
Q 026126 178 SITEMLNK 185 (243)
Q Consensus 178 ~~~~~L~~ 185 (243)
.+++.|..
T Consensus 205 ~l~~~L~~ 212 (364)
T 1wos_A 205 KVWDALMN 212 (364)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88887764
No 18
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*
Probab=93.35 E-value=0.32 Score=43.70 Aligned_cols=79 Identities=11% Similarity=0.016 Sum_probs=60.2
Q ss_pred cCcEEEECCCCceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEEEEEEEEE---eCCEEEEEECCCChHH
Q 026126 102 NGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWI---MKNAVILVVSPLTCSS 178 (243)
Q Consensus 102 ~~vgl~DlS~~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~~v~~~---~~d~f~l~~~~~~~~~ 178 (243)
..|-+.|. .++.|.|.||.|.+.|+.++..|+..++.+....+.+ +++-+.++.|. +++.|.|+++.+....
T Consensus 140 ~~V~i~d~-~~~~lal~GP~a~~vL~~l~~~dl~~l~~~~~~~~~~----~g~~~~~i~R~g~tGe~G~el~~~~~~a~~ 214 (375)
T 1wsr_A 140 RDVGLEVL-DNALLALQGPTAAQVLQAGVADDLRKLPFMTSAVMEV----FGVSGCRVTRCGYTGEDGVEISVPVAGAVH 214 (375)
T ss_dssp CCCEEEEC-CCEEEEEESTTHHHHHHTTCSSCGGGCCTTBEEEEEE----TTEEEEEEESCCSSSSSEEEEEECHHHHHH
T ss_pred CeEEEEEC-CEEEEEEECcCHHHHHHhhcCcchhhCCccceEEEEE----CCcceEEEEeCccCCCCeEEEEeeHHHHHH
Confidence 47899999 8899999999999999999988888777776654432 23222456664 4889999998887777
Q ss_pred HHHHHHh
Q 026126 179 ITEMLNK 185 (243)
Q Consensus 179 ~~~~L~~ 185 (243)
+++.|..
T Consensus 215 l~~~L~~ 221 (375)
T 1wsr_A 215 LATAILK 221 (375)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7777754
No 19
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Probab=92.43 E-value=0.54 Score=42.73 Aligned_cols=79 Identities=9% Similarity=-0.019 Sum_probs=60.0
Q ss_pred cCcEEEECCC-CceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEEEEEEEEE---eCCEEEEEEC-----
Q 026126 102 NGVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWI---MKNAVILVVS----- 172 (243)
Q Consensus 102 ~~vgl~DlS~-~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~~v~~~---~~d~f~l~~~----- 172 (243)
..|-+.|+|. +..+.|.||.|.+.|+.++..|+..++.+.+..+.+ .| ...++.|. +++.|.|+++
T Consensus 140 ~~V~i~d~s~~~~~lal~GP~a~~vL~~l~~~dl~~~~~~~~~~~~~---~g--~~~~i~R~g~tge~G~ei~~~~~~~~ 214 (401)
T 1v5v_A 140 LDLEIELKTYDIAMFAVQGPKARDLAKDLFGIDINEMWWFQARWVEL---DG--IKMLLSRSGYTGENGFEVYIEDANPY 214 (401)
T ss_dssp CCCEEEECTTTEEEEEEESTTHHHHHHHHHSCCGGGSCTTBEEEEEE---TT--EEEEEECCCSSSSCEEEEEEECCCTT
T ss_pred CcEEEEECcCCEEEEEEECccHHHHHHHhhCCCchhcCccceEEEEe---CC--eEEEEEeCCCCCCCeEEEEEeccccc
Confidence 4689999976 799999999999999999988888777777655432 12 23455565 4789999988
Q ss_pred ---------CCChHHHHHHHHh
Q 026126 173 ---------PLTCSSITEMLNK 185 (243)
Q Consensus 173 ---------~~~~~~~~~~L~~ 185 (243)
.+.+..+++.|..
T Consensus 215 ~~~~~~~~~~~~a~~l~~~L~~ 236 (401)
T 1v5v_A 215 HPDESKRGEPEKALHVWERILE 236 (401)
T ss_dssp CSSGGGCCCCHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHh
Confidence 6667777777654
No 20
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=91.80 E-value=0.83 Score=40.78 Aligned_cols=80 Identities=11% Similarity=0.025 Sum_probs=61.1
Q ss_pred cCcEEEECCC-CceEEEeCccHHHHHhhccccCcCCCCCCceE-EeEeecCCCcEEEEEEEEE---eCCEEEEEECCCCh
Q 026126 102 NGVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFEILREGQGC-DTVFVTPTARTIDIAHAWI---MKNAVILVVSPLTC 176 (243)
Q Consensus 102 ~~vgl~DlS~-~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~-yt~~Ln~~G~i~d~~v~~~---~~d~f~l~~~~~~~ 176 (243)
..|-+.|+|. +..+.|.||.|.+.|+.++..|+..++.+... .+.+ ++ ....+.|. +++.|.|+++....
T Consensus 133 ~~V~i~d~s~~~~~lal~Gp~a~~~L~~l~~~dl~~~~~~~~~~~~~~----~g-~~~~i~R~g~tge~G~el~~~~~~a 207 (365)
T 1yx2_A 133 GDVQIDNQSDQIALLAVQGPKAEAILKNLTDADVSALKPFAFIDEADI----SG-RKALISRTGYTGEDGYEIYCRSDDA 207 (365)
T ss_dssp SSCEEEECTTTEEEEEEESTTHHHHHHTTBSSCGGGCCTTBEEEEEEE----TT-EEEEEESCCSSSSSEEEEEEEGGGH
T ss_pred CCeEEEECcCCEEEEEEECcCHHHHHHHhhCCChhhCCcceeEEEEEE----CC-eEEEEEeCcccCCCEEEEEEcHHHH
Confidence 3688999765 79999999999999999998888877777654 3332 22 23455553 58999999999988
Q ss_pred HHHHHHHHhc
Q 026126 177 SSITEMLNKY 186 (243)
Q Consensus 177 ~~~~~~L~~~ 186 (243)
..+++.|...
T Consensus 208 ~~l~~~L~~a 217 (365)
T 1yx2_A 208 MHIWKKIIDA 217 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888887653
No 21
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A*
Probab=90.60 E-value=0.84 Score=41.00 Aligned_cols=79 Identities=10% Similarity=-0.014 Sum_probs=60.3
Q ss_pred cCcEEEECCCCceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEEEEEEEEE---eCCEEEEEECC-CChH
Q 026126 102 NGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWI---MKNAVILVVSP-LTCS 177 (243)
Q Consensus 102 ~~vgl~DlS~~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~~v~~~---~~d~f~l~~~~-~~~~ 177 (243)
-.|-+.+ ..++.|.|.||.|.+.|+.++..|+..++..+...+.+ .| .++.+.|. +++.|-|.++. ..+.
T Consensus 141 ~~V~i~~-~~~a~lalqGP~A~~~L~~l~~~~l~~l~~~~~~~~~i---~g--~~~~i~R~gytGE~G~Ei~~~~~~~a~ 214 (369)
T 3tfi_A 141 FDVKIVE-PVVDIMAIQGPKSFALMEKVFGKKITELKFFGFDYFDF---EG--TKHLIARSGWSKQGGYEVYVENTQSGQ 214 (369)
T ss_dssp CCCEEEC-CSCEEEEEESTTHHHHHHHHHCGGGGGCCTTBEEEEEE---TT--EEEEEESCCSSSSCEEEEEECSHHHHH
T ss_pred CeEEEEE-CCEEEEEEECccHHHHHHhhcCCchhhCCCceEEEEEE---CC--eEEEEEeCccCCCCeEEEEEecHHHHH
Confidence 4677776 67899999999999999999888888777766654433 22 24556664 58999999998 8888
Q ss_pred HHHHHHHhc
Q 026126 178 SITEMLNKY 186 (243)
Q Consensus 178 ~~~~~L~~~ 186 (243)
.+++.|...
T Consensus 215 ~lw~~L~~a 223 (369)
T 3tfi_A 215 KLYDHLFEV 223 (369)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 888877653
No 22
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A*
Probab=90.10 E-value=0.48 Score=42.79 Aligned_cols=75 Identities=12% Similarity=0.046 Sum_probs=56.2
Q ss_pred hcCcEEEECCC-CceEEEeCccHHHHHhhcc----ccCcCCCCCCceEEeEeecCCCcEEEEEEEEEe---CCEEEEEEC
Q 026126 101 DNGVAAVDLSH-FGRIRVSGDDRIQFLHNQS----TANFEILREGQGCDTVFVTPTARTIDIAHAWIM---KNAVILVVS 172 (243)
Q Consensus 101 R~~vgl~DlS~-~~~i~V~G~DA~~fLq~l~----t~dv~~l~~G~~~yt~~Ln~~G~i~d~~v~~~~---~d~f~l~~~ 172 (243)
+..|-+-| |. ++.+.|.||.|.+.|+.++ ..|++.++......+ | +.++.|.+ ++.|.|+++
T Consensus 143 ~~~V~i~d-s~~~~~lalqGP~a~~~l~~l~~~~~~~~l~~~~~~~~~~~------g---~~~i~R~gytGe~G~ei~~~ 212 (381)
T 1vlo_A 143 PFGIEITV-RDDLSMIAVQGPNAQAKAATLFNDAQRQAVEGMKPFFGVQA------G---DLFIATTGYTGEAGYEIALP 212 (381)
T ss_dssp GGTCEEEE-CTTEEEEEEESTTHHHHHHTTCCHHHHHHHTTCCSSBEEEE------T---TEEEECCCSSSSCEEEEEEE
T ss_pred CCceEEEE-CCCEEEEEEECccHHHHHHHhhccccCCCcccCCcceeEEe------c---cEEEEecCCCCCCEEEEEEe
Confidence 44799999 65 8999999999999999997 456766665655543 3 34566654 789999998
Q ss_pred CCChHHHHHHHHh
Q 026126 173 PLTCSSITEMLNK 185 (243)
Q Consensus 173 ~~~~~~~~~~L~~ 185 (243)
......+++.|..
T Consensus 213 ~~~a~~l~~~L~~ 225 (381)
T 1vlo_A 213 NEKAADFWRALVE 225 (381)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8777777776654
No 23
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=88.78 E-value=1.5 Score=40.66 Aligned_cols=76 Identities=14% Similarity=0.140 Sum_probs=51.5
Q ss_pred CCCceEEEeCccHHHHHhhcccc-CcCCCCCCceEEeEeecC-CCcEEEE-EEEEE-------eCCEEEEEECCC--ChH
Q 026126 110 SHFGRIRVSGDDRIQFLHNQSTA-NFEILREGQGCDTVFVTP-TARTIDI-AHAWI-------MKNAVILVVSPL--TCS 177 (243)
Q Consensus 110 S~~~~i~V~G~DA~~fLq~l~t~-dv~~l~~G~~~yt~~Ln~-~G~i~d~-~v~~~-------~~d~f~l~~~~~--~~~ 177 (243)
+.-+.++|+||+|.+.++.++.. .....++-++.|+.+.++ +|.++|. +++++ +||-.=+-+-++ ...
T Consensus 22 ~~i~iiRiSG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~p~s~TgEd~~E~~~HGg~~v~~ 101 (462)
T 3geh_A 22 GSVGIVRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIRHPQTRQIVDEALLLLMKAPRSYTREDVVEFHCHGGIIAVQ 101 (462)
T ss_dssp CSCEEEEEESTTHHHHHHHHEECCSCCCCCTTEEEEEEECCSSSCCCCEEEEEEEECTTCSSSSSCEEEEEECCSSSHHH
T ss_pred ceEEEEEeEchhHHHHHHHHhCCCCccCCCCcEEEEEecccCCCCCCcceEEEEEEcCCCCCcCCceEEEECCCCHHHHH
Confidence 34578999999999999999864 333446778999999995 5888875 45554 466554544443 444
Q ss_pred HHHHHHHh
Q 026126 178 SITEMLNK 185 (243)
Q Consensus 178 ~~~~~L~~ 185 (243)
.+++.+-+
T Consensus 102 ~~l~~~~~ 109 (462)
T 3geh_A 102 QVLQLCLE 109 (462)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45554433
No 24
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=88.57 E-value=0.9 Score=44.85 Aligned_cols=78 Identities=15% Similarity=0.074 Sum_probs=60.4
Q ss_pred C-cEEEECCC-CceEEEeCccHHHHHhhccccCcCC--CCCCceEEeEeecCCCcEEEEEEEEEe---CCEEEEEECCCC
Q 026126 103 G-VAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFEI--LREGQGCDTVFVTPTARTIDIAHAWIM---KNAVILVVSPLT 175 (243)
Q Consensus 103 ~-vgl~DlS~-~~~i~V~G~DA~~fLq~l~t~dv~~--l~~G~~~yt~~Ln~~G~i~d~~v~~~~---~d~f~l~~~~~~ 175 (243)
. |-+.|+|. ++.|.|.||.|.+.|+.++..|+.. ++.+++..+.+ ++ .++++.|.+ ++.|.|.++...
T Consensus 591 ~~v~i~d~s~~~~~~~l~Gp~a~~~l~~~~~~dl~~~~~~~~~~~~~~~----~g-~~~~~~r~~~tge~g~ei~~~~~~ 665 (830)
T 1pj5_A 591 DWVQVRDTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVI----GG-IPVTAMRLSYVGELGWELYTSADN 665 (830)
T ss_dssp CCCEEEECGGGEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEE----TT-EEEEEECCCTTSSSEEEEEEEHHH
T ss_pred CeEEEEEccCCEEEEEEECcCHHHHHHHhcCcCCccccCCCceEEEEEE----CC-EEEEEEECcccCCCcEEEEecHHH
Confidence 5 99999976 7999999999999999998888753 66666655433 22 245677764 889999999888
Q ss_pred hHHHHHHHHh
Q 026126 176 CSSITEMLNK 185 (243)
Q Consensus 176 ~~~~~~~L~~ 185 (243)
+..+++.|..
T Consensus 666 ~~~l~~~l~~ 675 (830)
T 1pj5_A 666 GQRLWDALWQ 675 (830)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888887754
No 25
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=84.05 E-value=3.6 Score=38.16 Aligned_cols=62 Identities=8% Similarity=0.021 Sum_probs=44.6
Q ss_pred CCceEEEeCccHHHHHhhcccc-----CcCCCCCCceEEeEeecCCCcEEEE-EEEEE-------eCCEEEEEECC
Q 026126 111 HFGRIRVSGDDRIQFLHNQSTA-----NFEILREGQGCDTVFVTPTARTIDI-AHAWI-------MKNAVILVVSP 173 (243)
Q Consensus 111 ~~~~i~V~G~DA~~fLq~l~t~-----dv~~l~~G~~~yt~~Ln~~G~i~d~-~v~~~-------~~d~f~l~~~~ 173 (243)
.-+.++|+||+|.+.++.++.. ++...++-++.|+.+.++ |.++|. ++++. +||-.=+-+-+
T Consensus 29 ~i~iiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iD~~l~~~f~~P~s~TgEd~~E~~~HG 103 (476)
T 3gee_A 29 ALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYDG-EEMVDEVIALVFRAPRSFTAEQMVEFTCHG 103 (476)
T ss_dssp SEEEEEEESTTHHHHHHHHEEESSSCCCGGGCCTTEEEEEEEESS-SCEEEEEEEEEEBTTBSSSSSCEEEEEEEC
T ss_pred EEEEEEeechhHHHHHHHHhCcccccccccCCCCCEEEEEEEecC-CcccceEEEEEecCCCCCCCCCeEEEECCC
Confidence 4468999999999999999863 233346778999999986 889974 45554 46655444444
No 26
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=82.26 E-value=2 Score=40.08 Aligned_cols=46 Identities=11% Similarity=0.132 Sum_probs=37.0
Q ss_pred CCCceEEEeCccHHHHHhhccc-cCcCCCCCCceEEeEeecCCCcEEEEE
Q 026126 110 SHFGRIRVSGDDRIQFLHNQST-ANFEILREGQGCDTVFVTPTARTIDIA 158 (243)
Q Consensus 110 S~~~~i~V~G~DA~~fLq~l~t-~dv~~l~~G~~~yt~~Ln~~G~i~d~~ 158 (243)
+.-+.++|+||+|.+.++.++. .+.+ ++-.+.|+.+.+ +|.++|..
T Consensus 46 ~~i~iiRiSG~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~iDe~ 92 (482)
T 1xzp_A 46 GAIAILRLSGPDSWKIVQKHLRTRSKI--VPRKAIHGWIHE-NGEDVDEV 92 (482)
T ss_dssp CSCEEEEEESSSHHHHHHTTEEESSCC--CBTBCEEEEECC-SSCCCCEE
T ss_pred ceEEEEEcccHHHHHHHHHHhcCCCCC--CCceEEEEEEec-CCeeeeEE
Confidence 3456999999999999999985 2333 677899999999 89988653
No 27
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}
Probab=82.20 E-value=1.2 Score=40.45 Aligned_cols=73 Identities=11% Similarity=-0.047 Sum_probs=54.0
Q ss_pred CcEEEECCCCceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEEEEEEEEE---eCCEEEEEECCCChHHH
Q 026126 103 GVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWI---MKNAVILVVSPLTCSSI 179 (243)
Q Consensus 103 ~vgl~DlS~~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~~v~~~---~~d~f~l~~~~~~~~~~ 179 (243)
.|-+ ....++.|.|.||.|.+.|+.++. |++.++......+-+ ++.+.|. +++.|-|.++......+
T Consensus 164 ~V~i-~~~~~a~lalqGP~A~~vL~~l~~-~l~~~~~~~~~~~~i--------~~~i~R~gytGE~G~Ei~~p~~~a~~l 233 (393)
T 3gir_A 164 ECQV-IALERVLLALQGPQAAAVLADAGL-PGNELLFMQGFEPQQ--------DWFITRSGYTGEDGFEIALPIGCARAL 233 (393)
T ss_dssp SCEE-EECCCEEEEEESTTHHHHHHHTTC-CCTTCCTTBEECSST--------TCEEESCCSSSSSEEEEEECHHHHHHH
T ss_pred ceEE-EECCEEEEEEECccHHHHHHHhcC-chhhcccceeEEEEE--------eEEEEeCCCCCCCeEEEEEEHHHHHHH
Confidence 6777 667789999999999999999987 887666555432211 3345554 58899999998877777
Q ss_pred HHHHHh
Q 026126 180 TEMLNK 185 (243)
Q Consensus 180 ~~~L~~ 185 (243)
++.|..
T Consensus 234 w~~L~~ 239 (393)
T 3gir_A 234 AEKLLG 239 (393)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 776643
No 28
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=76.23 E-value=8.9 Score=38.61 Aligned_cols=80 Identities=13% Similarity=0.064 Sum_probs=58.0
Q ss_pred cCcEEEECCC-CceEEEeCccHHHHHhhcc-ccCcC--CCCCCceEEeEeecCCCcEEEEEEEEE---eCCEEEEEECCC
Q 026126 102 NGVAAVDLSH-FGRIRVSGDDRIQFLHNQS-TANFE--ILREGQGCDTVFVTPTARTIDIAHAWI---MKNAVILVVSPL 174 (243)
Q Consensus 102 ~~vgl~DlS~-~~~i~V~G~DA~~fLq~l~-t~dv~--~l~~G~~~yt~~Ln~~G~i~d~~v~~~---~~d~f~l~~~~~ 174 (243)
..|-+.|+|. ++.|.|.||.|.+.|+.++ ..|++ .++......+-+. +++ ...+.|. +++.|-|.++..
T Consensus 715 ~~V~i~d~s~~~~~lal~GP~a~~~l~~~~~~~dl~~~~~~~~~~~~~~~~---~g~-~~~~~R~~~tGe~G~ei~~~~~ 790 (965)
T 2gag_A 715 LDVTCTSVTEQLATVAVVGPRSRDVIAKLASTVDVSNEGFKFMAFKDVVLD---SGI-EARISRISFSGELAFEIAVPAW 790 (965)
T ss_dssp SCCEEEECTTTEEEEEEESTTHHHHHHHHCTTSCCSTTTSCTTBEEEEECT---TSC-EEEEECCCSSSSCEEEEEEEGG
T ss_pred CcEEEEEccCCEEEEEEECcCHHHHHHHhhCCCCCccccCCCceeEEEEEc---CCC-EEEEEeCCccCCCEEEEEEeHH
Confidence 4699999876 7999999999999999998 34663 3455555433221 222 3456664 588999999999
Q ss_pred ChHHHHHHHHh
Q 026126 175 TCSSITEMLNK 185 (243)
Q Consensus 175 ~~~~~~~~L~~ 185 (243)
....+++.|..
T Consensus 791 ~~~~l~~~L~~ 801 (965)
T 2gag_A 791 HGLRVWEDVYA 801 (965)
T ss_dssp GHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888887764
No 29
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A
Probab=71.70 E-value=6.4 Score=34.65 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=36.8
Q ss_pred CeEEEEecCCEEEEEEECCcHHHHHhhccCCCCCCCCCceeEEE
Q 026126 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHY 235 (243)
Q Consensus 192 ~V~i~d~t~~~~~l~v~GP~A~~vL~~l~~~dls~~~~~~~~~~ 235 (243)
.|-+-|++. ++.|.|.||.|.+.|+.++..|++.++...++..
T Consensus 30 ~~~l~dlS~-~~~i~v~G~DA~~fLq~l~tndv~~l~~g~~~yt 72 (338)
T 1vly_A 30 PLTLMTLDD-WALATITGADSEKYMQGQVTADVSQMAEDQHLLA 72 (338)
T ss_dssp CSEEEECTT-EEEEEEESTTHHHHHHTTBSSCGGGCCTTCEEEE
T ss_pred ceEEEECCC-cEEEEEECCCHHHHhcchhhhcccccCCCceEEE
Confidence 377889975 8999999999999999999999998887766543
No 30
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum}
Probab=71.31 E-value=3.9 Score=36.39 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=52.7
Q ss_pred hcCcEEEECC-CCceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEEEEEE-EEEe------CCEEEEEEC
Q 026126 101 DNGVAAVDLS-HFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAH-AWIM------KNAVILVVS 172 (243)
Q Consensus 101 R~~vgl~DlS-~~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~d~~v-~~~~------~d~f~l~~~ 172 (243)
+..|-+-|+| .+..+.|.||.|.+.|+.++..+++.++ +..+ ..|.. ..+ .|.+ ++.|-|+++
T Consensus 123 ~~~V~i~d~s~~~~~lalqGP~a~~~l~~l~~~~l~~~~-----~~~~--~~g~~--~~~~~r~GsytGE~e~G~el~~p 193 (355)
T 3ttg_A 123 RTKAKITDMSDHFREIRLVGPETISVLLSLFDNNFSGSS-----FRML--KNGGY--VLIHPTSFQHNLDVGLQADLFIP 193 (355)
T ss_dssp TCCCEEEECGGGEEEEEEESTTHHHHHHHHSSSCCCSSE-----EEEC--TTSCE--EEECCSBCGGGCBCCCEEEEEEE
T ss_pred CCCeEEEECcCCEEEEEEECCcHHHHHHHhccCCCccCc-----ceee--ccCcE--EEEecCcccccCccCCeEEEEEe
Confidence 4678999997 4799999999999999999766666432 1111 22421 122 2332 489999999
Q ss_pred CCChHHHHHHHHh
Q 026126 173 PLTCSSITEMLNK 185 (243)
Q Consensus 173 ~~~~~~~~~~L~~ 185 (243)
......+++.|..
T Consensus 194 ~~~a~~l~~~L~~ 206 (355)
T 3ttg_A 194 IDQFETTQKSLED 206 (355)
T ss_dssp GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888777754
No 31
>2k5k_A Uncharacterized protein RHR2; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Rhodobacter sphaeroides 2}
Probab=27.03 E-value=22 Score=24.18 Aligned_cols=15 Identities=13% Similarity=0.124 Sum_probs=13.8
Q ss_pred ecCCccccccccCcc
Q 026126 15 GSTSRLHNTRTTKFF 29 (243)
Q Consensus 15 ~~~~~~d~~Rf~~~~ 29 (243)
|-+.+.++.||++|.
T Consensus 40 GG~~G~EPtRYGDWE 54 (70)
T 2k5k_A 40 GGRNGPEPVRFGDWE 54 (70)
T ss_dssp CCCCCCCCCSCCCCC
T ss_pred CCCCCCCCcccccch
Confidence 778889999999998
No 32
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ...
Probab=21.53 E-value=63 Score=26.01 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=20.0
Q ss_pred eEEEeCccHHHHHhhccccCcCCC
Q 026126 114 RIRVSGDDRIQFLHNQSTANFEIL 137 (243)
Q Consensus 114 ~i~V~G~DA~~fLq~l~t~dv~~l 137 (243)
++.++|+.+.+||+++++--++++
T Consensus 91 kVTLRg~~my~FL~rll~v~lPri 114 (182)
T 1mji_A 91 RVTLRRDRMWIFLEKLLNVALPRI 114 (182)
T ss_dssp EEEECHHHHHHHHHHHHHTTTTTC
T ss_pred EEEEccHHHHHHHHHHHHHhcccc
Confidence 789999999999999998644433
No 33
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=21.12 E-value=1.2e+02 Score=20.60 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=29.6
Q ss_pred CCceEEeEeecCCCcEEEEEEEEEeCCEEEEEECCCChHHHHHHHHhccc
Q 026126 139 EGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVF 188 (243)
Q Consensus 139 ~G~~~yt~~Ln~~G~i~d~~v~~~~~d~f~l~~~~~~~~~~~~~L~~~~~ 188 (243)
.|.+...+.++++|.+.+..+++-.++ ....+..++.+++..+
T Consensus 24 ~G~V~v~~~i~~~G~v~~~~v~~ssg~-------~~ld~aa~~av~~~~f 66 (90)
T 1u07_A 24 EGQVKVKFDVTPDGRVDNVQILSAKPA-------NMFEREVKNAMRRWRY 66 (90)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEEESS-------SSSHHHHHHHHTTCEE
T ss_pred ceEEEEEEEECCCCCEEEEEEEecCCc-------HHHHHHHHHHHHhCCC
Confidence 488999999999999998877765433 2234444556665543
No 34
>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding PROT; 1.80A {Geobacillus stearothermophilus} SCOP: d.77.1.1
Probab=20.10 E-value=67 Score=25.76 Aligned_cols=24 Identities=13% Similarity=0.344 Sum_probs=20.1
Q ss_pred eEEEeCccHHHHHhhccccCcCCC
Q 026126 114 RIRVSGDDRIQFLHNQSTANFEIL 137 (243)
Q Consensus 114 ~i~V~G~DA~~fLq~l~t~dv~~l 137 (243)
++.++|+.+.+||+++++--++++
T Consensus 88 kVTLRg~~my~FL~rll~v~lPri 111 (179)
T 1iq4_A 88 KVTLRGERMYEFLDKLISVSLPRA 111 (179)
T ss_dssp EEEECHHHHHHHHHHHHHTTGGGS
T ss_pred EEEEccHHHHHHHHHHHHHhcccc
Confidence 689999999999999998654443
Done!