BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026127
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Halodurans
pdb|3LKE|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Halodurans
pdb|3LKE|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Halodurans
Length = 263
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 80/198 (40%), Gaps = 17/198 (8%)
Query: 5 EKHGDVFVLTLTGSSDVDEHRFGPPAI--DSILSAIAKAKAEATPGSALITTSHGKFFSN 62
E D +TL D E + G A S+L AI E + S ++ + H +FS+
Sbjct: 9 EIQNDALYITL----DYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSS 64
Query: 63 G---FDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXXXXX 119
G DL + S RE LH + V + P T
Sbjct: 65 GPRLEDLLICASDQSDVRLREVLHVL----NHCVLEIFTSPKVTVALINGYAYGGGFNMM 120
Query: 120 XSHDYVI-MRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEA 178
+ D I +RR K + ++ I PD A+ F ++ ++LL K EEA
Sbjct: 121 LACDRRIALRRAKFLENFHKMGIS---PDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEA 177
Query: 179 LRMGLVEAAYDSEEQVAE 196
LR+GL++ ++++++ E
Sbjct: 178 LRLGLIQEICENKQELQE 195
>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus
Thermophilus Hb8
Length = 253
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 84/198 (42%), Gaps = 20/198 (10%)
Query: 22 DEHRFGPPAIDSILSAI-AKAKAEATPG-SALITTSHGKFFSNGFDLAWAQAAGSRTGAR 79
D R P + + LS + A EA PG A++ T GK FS G DLA+ + + GA
Sbjct: 16 DPERRNPLSPEXALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERV-TELGAE 74
Query: 80 ERLHYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXXXXXXSHDYVIMRRDKGVLYMSEV 139
E + + R + + P PT + D V+ + + Y +EV
Sbjct: 75 ENYRHSLSLXR-LFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVXDEEARLGY-TEV 132
Query: 140 DIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV----------EAAYD 189
IG L RA VG A +D+LL + ++ EA +GLV E A
Sbjct: 133 KIGFVAALVSVILVRA-VGEKAA-KDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAKA 190
Query: 190 SEEQVAE---ASMRLAKQ 204
E+VA+ S+RL K+
Sbjct: 191 LAEEVAKNAPTSLRLTKE 208
>pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
Length = 272
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 141 IGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMR 200
+G+ D+ A + VG A A+ LL + + GEEA R+GLV D +E + A+ R
Sbjct: 147 LGVAAGDHAAICWPLLVGMAKAKY-YLLTCETLSGEEAERIGLVSTCVDDDEVLPTAT-R 204
Query: 201 LAKQLA 206
LA+ LA
Sbjct: 205 LAENLA 210
>pdb|1PVY|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1PVY|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1SNN|A Chain A, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
pdb|1SNN|B Chain B, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
Length = 227
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 10/66 (15%)
Query: 174 KGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG-------RKWAGEVYAEIRKSLCPDL 226
K EAL+ G + YDS+E+ E M +A Q RK AG + I +L PD+
Sbjct: 6 KAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGL---ICTALHPDI 62
Query: 227 CGVLGL 232
C LG+
Sbjct: 63 CNKLGI 68
>pdb|1PVW|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|C Chain C, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
Length = 227
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 10/66 (15%)
Query: 174 KGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG-------RKWAGEVYAEIRKSLCPDL 226
K EAL+ G + YDS+E+ E M +A Q RK AG + I +L PD+
Sbjct: 6 KAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGL---ICTALHPDI 62
Query: 227 CGVLGL 232
C LG+
Sbjct: 63 CNKLGI 68
>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase
(Gk2873) From Geobacillus Kaustophilus Hta426
pdb|2IEX|B Chain B, Crystal Structure Of Dihydroxynapthoic Acid Synthetase
(Gk2873) From Geobacillus Kaustophilus Hta426
pdb|2IEX|C Chain C, Crystal Structure Of Dihydroxynapthoic Acid Synthetase
(Gk2873) From Geobacillus Kaustophilus Hta426
Length = 272
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 78/203 (38%), Gaps = 13/203 (6%)
Query: 9 DVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSN 62
D+ T G + + +R F P ++ ++ A KA+ ++ G ++T + GK F +
Sbjct: 13 DIIYETYNGIAKITINRPEVHNAFRPKTVNEMIDAFTKARDDSNIGVIILTGAGGKAFCS 72
Query: 63 GFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXXXXXXSH 122
G D + G G E V + ++ +P P
Sbjct: 73 GGDQK-VRGHGGYVGEDEIPRLNVLDLQRLIRV---IPKPVIAMVAGYAIGGGHVLHVVC 128
Query: 123 DYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMG 182
D I D + + +G Y A VG A R++ ++ +EAL MG
Sbjct: 129 DLTIA-ADNAIFGQTGPKVGSFDGGYGAGYLARIVGHKKA-REIWYLCRQYTAQEALEMG 186
Query: 183 LVEAAYDSEEQVAEASMRLAKQL 205
LV EQ+ E +++ A+++
Sbjct: 187 LVNKVV-PLEQLEEETVKWAQEI 208
>pdb|1WZ8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|B Chain B, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|C Chain C, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|D Chain D, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|E Chain E, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|F Chain F, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
Length = 264
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 141 IGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMR 200
+G+ D+ L+ VG A A+ +LL + + GEEA R+GLV A + +E+V E ++
Sbjct: 144 LGVAAGDHAVLLWPLLVGMAKAKYHLLLN-EPLTGEEAERLGLVALAVE-DEKVYEKALE 201
Query: 201 LAKQLA 206
+A++LA
Sbjct: 202 VAERLA 207
>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From
Mycobacterium Marinum
Length = 256
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 79/208 (37%), Gaps = 8/208 (3%)
Query: 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
M TL+ D V TLT + + F D+ A+ A + L+T S G+ F
Sbjct: 5 MVTLQIDDDNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGS-GRGF 63
Query: 61 SNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXXXXXX 120
S G DLA QA + E FR ++ A+ P P
Sbjct: 64 SAGTDLAEMQARITDPNFSEGKF----GFRGLIKALAGFPKPLICAVNGLGVGIGATILG 119
Query: 121 SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALR 180
D M L +G+ + L VG A +L+ ++ I EEALR
Sbjct: 120 YADLAFMS-STARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAW-LLMSSEWIDAEEALR 177
Query: 181 MGLVEAAYDSEEQVAEASMRLAKQLAGR 208
MGLV EE + EA R A+ LA +
Sbjct: 178 MGLVWRICSPEELLPEAR-RHAEILAAK 204
>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
Length = 261
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 134 LYMSEVDIGLTLPDYFAALFRAK--VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSE 191
L + E+ +GL +P FA R VG A A + L + I G EAL+ GLV + +E
Sbjct: 131 LGLPELTLGL-IPG-FAGTQRLPRYVGKAKAC-EXXLTSTPITGAEALKWGLVNGVF-AE 186
Query: 192 EQVAEASMRLAKQLAGRKWA 211
E + ++++AKQ+AG+ A
Sbjct: 187 ETFLDDTLKVAKQIAGKSPA 206
>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk
Inhibitor For The Prevention Of Ischemia-Reperfusion
Injury
pdb|3TTI|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-930, An Orally
Active Anti-Fibrotic Jnk Inhibitor
Length = 464
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 142 GLTLPDYFA-ALFRAKVG----SATARRDVLLR------AKKIKGEEALRMGLVEAAYDS 190
GLT P F +LF A A+ RD+L + AK+I ++AL+ + YD
Sbjct: 306 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 365
Query: 191 EEQVAEASMRLAKQLAGR-----KWAGEVYAEIRKS 221
E A KQL R +W +Y E+ S
Sbjct: 366 AEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMNS 401
>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With
Mgamp-Pnp
Length = 423
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 142 GLTLPDYFA-ALFRAKVG----SATARRDVLLR------AKKIKGEEALRMGLVEAAYDS 190
GLT P F +LF A A+ RD+L + AK+I ++AL+ + YD
Sbjct: 306 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 365
Query: 191 EEQVAEASMRLAKQLAGR-----KWAGEVYAEIRKS 221
E A KQL R +W +Y E+ S
Sbjct: 366 AEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMNS 401
>pdb|3Q1T|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
Length = 278
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 9/151 (5%)
Query: 50 ALITTSHGKFFSNG--FDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTXXXX 107
A++ GK FS+G FDL + G G R+ M E+ R +V M++ P
Sbjct: 66 AVLVRGEGKAFSSGGSFDLI-DETIGDYQG---RIRIMREA-RDLVHNMINCDTPVVSAI 120
Query: 108 XXXXXXXXXXXXXSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVL 167
D + R L +G+ D+ A + VG A A+ L
Sbjct: 121 RGPAVGAGLVVALLADISVAGR-TAKLIDGHTKLGVAAGDHAAICWPLLVGMAKAKY-YL 178
Query: 168 LRAKKIKGEEALRMGLVEAAYDSEEQVAEAS 198
L + + GEEA R+GLV D ++ ++ A+
Sbjct: 179 LTCETLLGEEAERIGLVSLCVDDDDVLSTAA 209
>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And
Thiazole Based Inhibitors Of Jnk For The Treatment Of
Neurodegenerative Diseases
pdb|3OY1|A Chain A, Highly Selective C-Jun N-Terminal Kinase (Jnk) 2 And 3
Inhibitors With In Vitro Cns-Like Pharmacokinetic
Properties
Length = 362
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 142 GLTLPDYFA-ALFRAKVG----SATARRDVLLR------AKKIKGEEALRMGLVEAAYDS 190
GLT P F +LF A A+ RD+L + AK+I ++AL+ + YD
Sbjct: 267 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 326
Query: 191 EEQVAEASMRLAKQLAGR-----KWAGEVYAEIRKS 221
E A KQL R +W +Y E+ S
Sbjct: 327 AEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMNS 362
>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious
Tri-Substituted Thiophene Based Jnk Inhibitor
Length = 363
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 142 GLTLPDYFA-ALFRAKVG----SATARRDVLLR------AKKIKGEEALRMGLVEAAYDS 190
GLT P F +LF A A+ RD+L + AK+I ++AL+ + YD
Sbjct: 268 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 327
Query: 191 EEQVAEASMRLAKQLAGR-----KWAGEVYAEIRKS 221
E A KQL R +W +Y E+ S
Sbjct: 328 AEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMNS 363
>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-{3-Cyano-6-[3-(1-
Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2,
3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide
pdb|2O2U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-(3-Cyano-4,5,6,7-
Tetrahydro-1-Benzothien-2-Yl)-2-Fluorobenzamide
pdb|2ZDT|A Chain A, Crystal Structure Of Human Jnk3 Complexed With An
Isoquinolone Inhibitor
pdb|2ZDU|A Chain A, Crystal Structure Of Human Jnk3 Complexed With An
Isoquinolone Inhibitor
pdb|3DA6|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-(3-Methyl-
4-(3-(2-(Methylamino)pyrimidin-4-Yl)pyridin-2-Yloxy)
Naphthalen-1-Yl)-1h-Benzo[d]imidazol-2-Amine
pdb|2WAJ|A Chain A, Crystal Structure Of Human Jnk3 Complexed With A
1-Aryl-3,4- Dihydroisoquinoline Inhibitor
pdb|3V6R|A Chain A, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6R|B Chain B, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6S|A Chain A, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6S|B Chain B, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
Length = 364
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 142 GLTLPDYFA-ALFRAKVG----SATARRDVLLR------AKKIKGEEALRMGLVEAAYDS 190
GLT P F +LF A A+ RD+L + AK+I ++AL+ + YD
Sbjct: 268 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 327
Query: 191 EEQVAEASMRLAKQLAGR-----KWAGEVYAEIRKS 221
E A KQL R +W +Y E+ S
Sbjct: 328 AEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMNS 363
>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole-
Pyrimidine Inhibitor
pdb|1PMQ|A Chain A, The Structure Of Jnk3 In Complex With An Imidazole-
Pyrimidine Inhibitor
pdb|1PMU|A Chain A, The Crystal Structure Of Jnk3 In Complex With A
Phenantroline Inhibitor
pdb|1PMV|A Chain A, The Structure Of Jnk3 In Complex With A
Dihydroanthrapyrazole Inhibitor
Length = 364
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 142 GLTLPDYFA-ALFRAKVG----SATARRDVLLR------AKKIKGEEALRMGLVEAAYDS 190
GLT P F +LF A A+ RD+L + AK+I ++AL+ + YD
Sbjct: 269 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 328
Query: 191 EEQVAEASMRLAKQLAGR-----KWAGEVYAEIRKS 221
E A KQL R +W +Y E+ S
Sbjct: 329 AEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMNS 364
>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|2P33|A Chain A, Synthesis And Sar Of Aminopyrimidines As Novel C-Jun N-
Terminal Kinase (Jnk) Inhibitors
pdb|3CGF|A Chain A, Irak-4 Inhibitors (Part Ii)- A Structure Based Assessment
Of Imidazo[1,2 A]pyridine Binding
pdb|3CGO|A Chain A, Irak-4 Inhibitors (Part Ii)- A Structure Based Assessment
Of Imidazo[1,2 A]pyridine Binding
pdb|3G90|X Chain X, Jnk-3 Bound To
(Z)-5-Fluoro-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)
Methyl)-3-(Hydroxyimino)indolin-2-One
pdb|3G9N|A Chain A, Jnk3 Bound To
(Z)-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)methyl)-3-
(Hydroxyimino)-4-Phenylindolin-2-One
pdb|3G9L|X Chain X, Jnk3 Bound To
(Z)-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)methyl)-3-
(Hydroxyimino)-4-Styrylindolin-2-One
Length = 365
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 142 GLTLPDYFA-ALFRAKVG----SATARRDVLLR------AKKIKGEEALRMGLVEAAYDS 190
GLT P F +LF A A+ RD+L + AK+I ++AL+ + YD
Sbjct: 269 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 328
Query: 191 EEQVAEASMRLAKQLAGR-----KWAGEVYAEIRKS 221
E A KQL R +W +Y E+ S
Sbjct: 329 AEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMNS 364
>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562
Length = 364
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 142 GLTLPDYFA-ALFRAKVG----SATARRDVLLR------AKKIKGEEALRMGLVEAAYDS 190
GLT P F +LF A A+ RD+L + AK+I ++AL+ + YD
Sbjct: 268 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 327
Query: 191 EEQVAEASMRLAKQLAGR-----KWAGEVYAEIRKS 221
E A KQL R +W +Y E+ S
Sbjct: 328 AEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMNS 363
>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737
Length = 364
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 142 GLTLPDYFA-ALFRAKVG----SATARRDVLLR------AKKIKGEEALRMGLVEAAYDS 190
GLT P F +LF A A+ RD+L + AK+I ++AL+ + YD
Sbjct: 268 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 327
Query: 191 EEQVAEASMRLAKQLAGR-----KWAGEVYAEIRKS 221
E A KQL R +W +Y E+ S
Sbjct: 328 AEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMNS 363
>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline
Inhibitor
pdb|2R9S|B Chain B, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline
Inhibitor
Length = 356
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 142 GLTLPDYFA-ALFRAKVG----SATARRDVLLR------AKKIKGEEALRMGLVEAAYDS 190
GLT P F +LF A A+ RD+L + AK+I ++AL+ + YD
Sbjct: 261 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 320
Query: 191 EEQVAEASMRLAKQLAGR-----KWAGEVYAEIRKS 221
E A KQL R +W +Y E+ S
Sbjct: 321 AEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMNS 356
>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|B Chain B, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|C Chain C, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|D Chain D, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|E Chain E, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|F Chain F, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
Length = 254
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 139 VDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEAS 198
V IGL + L VG A A+ ++LL + ++ EEAL +GLV +E+ + EA
Sbjct: 129 VRIGLVPDSGLSFLLPRLVGLAKAQ-ELLLLSPRLSAEEALALGLVHRVVPAEKLMEEA- 186
Query: 199 MRLAKQLA 206
+ LAK+LA
Sbjct: 187 LSLAKELA 194
>pdb|2GTR|A Chain A, Human Chromodomain Y-Like Protein
pdb|2GTR|B Chain B, Human Chromodomain Y-Like Protein
pdb|2GTR|C Chain C, Human Chromodomain Y-Like Protein
Length = 261
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 73/201 (36%), Gaps = 6/201 (2%)
Query: 6 KHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFD 65
+ D F L + + + P + + SA++ A A+ + ++ ++ G F G D
Sbjct: 10 RKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDS--KLVLLSAVGSVFCCGLD 67
Query: 66 LAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXXXXXXSHDYV 125
+ + RE M E+ R V + P D V
Sbjct: 68 FIYFIRRLTDDRKRESTK-MAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCD-V 125
Query: 126 IMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVE 185
+ +K G + PD + + K+ + ++LL +K+ +EA GLV
Sbjct: 126 VWANEKAWFQTPYTTFGQS-PDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVS 184
Query: 186 AAYDSEEQVAEASMRLAKQLA 206
+ E +R+ K+LA
Sbjct: 185 QVFWPGTFTQEVMVRI-KELA 204
>pdb|2CW7|A Chain A, Crystal Structure Of Intein Homing Endonuclease Ii
Length = 537
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 188 YDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKS----LCPDLCGVLGLDMR 235
Y+ + +V + RLA + G+ G Y EI K L ++CGVL + R
Sbjct: 308 YNEDPEVLDDMERLASRFFGKVRRGRNYVEIPKKIGYLLFENMCGVLAENKR 359
>pdb|4HC8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase Echa3
(Rv0632c, Nysgrc-019494) From Mycobacterium Tuberculosis
H37rv
pdb|4HC8|B Chain B, Crystal Structure Of Probable Enoyl-Coa Hydratase Echa3
(Rv0632c, Nysgrc-019494) From Mycobacterium Tuberculosis
H37rv
Length = 255
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 19/189 (10%)
Query: 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYM 85
GP ++ +AI A + AL+ T +G+ FS GFDL +G A + L
Sbjct: 28 LGPAXQQALNAAIDNADRDDV--GALVITGNGRVFSGGFDLKIL-TSGEVQPAIDXLRGG 84
Query: 86 VE-SFRPVVAAMMDLPMPTXXXXXXXXXXXXXXXXXSHDYVIMRRDKGVLYMSEVDIGLT 144
E ++R ++ P P D+ + + +EV IG T
Sbjct: 85 FELAYR-----LLSYPKPVVXACTGHAIAXGAFLLSCGDHRVAAHAYNI-QANEVAIGXT 138
Query: 145 LPDYFAALFRAKVG-SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAK 203
+P +AAL K+ + +A + AK GE AL G ++ E + E + A+
Sbjct: 139 IP--YAALEIXKLRLTRSAYQQATGLAKTFFGETALAAGFID-----EIALPEVVVSRAE 191
Query: 204 QLAGRKWAG 212
+ A R++AG
Sbjct: 192 E-AAREFAG 199
>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW8|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW9|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZW9|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZWA|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWA|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWC|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
pdb|3ZWC|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
Length = 742
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 136 MSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVA 195
+ EV +G+ LP +V D++ K + +EALR+G+++A S+
Sbjct: 141 LPEVTLGI-LPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDP--V 197
Query: 196 EASMRLAKQL 205
E +++ A+++
Sbjct: 198 EEAIKFAQKI 207
>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa
pdb|2X58|B Chain B, The Crystal Structure Of Mfe1 Liganded With Coa
Length = 727
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 136 MSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVA 195
+ EV +G+ LP +V D++ K + +EALR+G+++A S+
Sbjct: 126 LPEVTLGI-LPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDP--V 182
Query: 196 EASMRLAKQL 205
E +++ A+++
Sbjct: 183 EEAIKFAQKI 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,081,605
Number of Sequences: 62578
Number of extensions: 202914
Number of successful extensions: 550
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 537
Number of HSP's gapped (non-prelim): 47
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)