BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026127
(243 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3MIE0|ECHD3_RAT Enoyl-CoA hydratase domain-containing protein 3, mitochondrial
OS=Rattus norvegicus GN=Echdc3 PE=2 SV=1
Length = 300
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 96/210 (45%), Gaps = 22/210 (10%)
Query: 42 KAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMM---D 98
+AE+ +I ++ G FS+G DL TGA+ R Y E F+ MM +
Sbjct: 85 EAESEDLKVIIISAEGPVFSSGHDLK------ELTGAQGR-DYHTEVFQTCSEVMMLIRN 137
Query: 99 LPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVG 158
P+P VA VNG A AAG L S D + DK V++GL F + +G
Sbjct: 138 HPVPIVAMVNGLATAAGCQLVASCDIAVA-SDKSSFATPGVNVGL-----FCSTPAVALG 191
Query: 159 SATARR---DVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA--GRKWAGE 213
A R+ ++L + I +EALR GL+ EEQ+ E + R+AK++A R
Sbjct: 192 RAVPRKVALEMLFTGEPISAQEALRHGLISKVVP-EEQLEEEATRIAKKIASLSRSVVAL 250
Query: 214 VYAEIRKSLCPDLCGVLGLDMRAVVSNSKL 243
A K L DL L +A+V N L
Sbjct: 251 GKATFYKQLPQDLSTAYFLASQAMVDNLTL 280
>sp|Q9D7J9|ECHD3_MOUSE Enoyl-CoA hydratase domain-containing protein 3, mitochondrial
OS=Mus musculus GN=Echdc3 PE=2 SV=1
Length = 300
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 92/207 (44%), Gaps = 22/207 (10%)
Query: 42 KAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMM---D 98
+AE+ +I ++ G FS+G DL A R Y E F+ MM +
Sbjct: 85 EAESEDLKVIIISAEGPVFSSGHDLKELTDAQGR-------DYHAEVFQTCSEVMMLIRN 137
Query: 99 LPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVG 158
P+P +A VNG A AAG L S D + DK V++GL F + +G
Sbjct: 138 HPVPILAMVNGLATAAGCQLVASCDIAVA-SDKSSFATPGVNVGL-----FCSTPAVALG 191
Query: 159 SATARR---DVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA--GRKWAGE 213
A R+ ++L + I +EALR GL+ EEQ+ +MR+AK+++ R
Sbjct: 192 RAVPRKVALEMLFTGEPISAQEALRHGLISKVV-PEEQLEAETMRIAKKISSLSRSVVAL 250
Query: 214 VYAEIRKSLCPDLCGVLGLDMRAVVSN 240
A K L DL L +A+V N
Sbjct: 251 GKATFYKQLPQDLRTAYFLASQAMVDN 277
>sp|A9MR28|CAID_SALAR Carnitinyl-CoA dehydratase OS=Salmonella arizonae (strain ATCC
BAA-731 / CDC346-86 / RSK2980) GN=caiD PE=3 SV=1
Length = 261
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT + KFFS G+DL A A G A F P + + DL P +A
Sbjct: 50 AIITGAGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTELFDLNKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D++I D + E +G+ +PD L K+ D
Sbjct: 100 AVNGYAFGGGFELALAADFIIC-ADHASFALPEAKLGI-VPDSGGVLRLPKILPPAIVND 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S ++ +++ LA+QL
Sbjct: 158 MVMTGRRMTAEEALRWGVVNRVV-SPHELLDSARELARQL 196
>sp|A8ALR7|CAID_CITK8 Carnitinyl-CoA dehydratase OS=Citrobacter koseri (strain ATCC
BAA-895 / CDC 4225-83 / SGSC4696) GN=caiD PE=3 SV=1
Length = 261
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G+DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ D + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVC-ADNASFALPEAKLGI-VPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+L+ +++ EEALR G+V S++ + +++ LA+QL
Sbjct: 158 MLMTGRRMDAEEALRWGIVNRVV-SQQALMDSARELAQQL 196
>sp|P59395|CAID_SHIFL Carnitinyl-CoA dehydratase OS=Shigella flexneri GN=caiD PE=3 SV=2
Length = 261
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT + KFFS G+DL A A G A F P + + +L P +A
Sbjct: 50 AIITGAGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFNLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ D + E +G+ +PD L K+ T +
Sbjct: 100 AVNGYAFGGGFELALAADFIVC-ADNASFALPEAKLGI-VPDSGGVLRLPKILPPTIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ + + LA+QL
Sbjct: 158 MVMTGRRMGAEEALRWGIVNRVV-SQAELMDNARELAQQL 196
>sp|Q8Z9L5|CAID_SALTI Carnitinyl-CoA dehydratase OS=Salmonella typhi GN=caiD PE=3 SV=3
Length = 261
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G+DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ + + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ E++ LA+QL
Sbjct: 158 MVMTGRRMSAEEALRWGIVNRVV-SQSELMESARELAQQL 196
>sp|Q8ZRX5|CAID_SALTY Carnitinyl-CoA dehydratase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=caiD PE=3 SV=3
Length = 261
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G+DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ + + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ E++ LA+QL
Sbjct: 158 MVMTGRRMSAEEALRWGVVNRVV-SQSELMESARELAQQL 196
>sp|B4TWR3|CAID_SALSV Carnitinyl-CoA dehydratase OS=Salmonella schwarzengrund (strain
CVM19633) GN=caiD PE=3 SV=1
Length = 261
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G+DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ + + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ E++ LA+QL
Sbjct: 158 MVMTGRRMSAEEALRWGVVNRVV-SQSELMESARELAQQL 196
>sp|B4TIG9|CAID_SALHS Carnitinyl-CoA dehydratase OS=Salmonella heidelberg (strain SL476)
GN=caiD PE=3 SV=1
Length = 261
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G+DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ + + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ E++ LA+QL
Sbjct: 158 MVMTGRRMSAEEALRWGVVNRVV-SQSELMESARELAQQL 196
>sp|B4T6J5|CAID_SALNS Carnitinyl-CoA dehydratase OS=Salmonella newport (strain SL254)
GN=caiD PE=3 SV=1
Length = 261
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G+DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ + + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ E++ LA+QL
Sbjct: 158 MVMTGRRMSAEEALRWGVVNRVV-SQSELMESARELAQQL 196
>sp|B5BL54|CAID_SALPK Carnitinyl-CoA dehydratase OS=Salmonella paratyphi A (strain
AKU_12601) GN=caiD PE=3 SV=1
Length = 261
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G+DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ + + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ +++ LA+QL
Sbjct: 158 MVMTGRRMSAEEALRWGIVNRVV-SQSELMDSARELAQQL 196
>sp|C0Q4L2|CAID_SALPC Carnitinyl-CoA dehydratase OS=Salmonella paratyphi C (strain
RKS4594) GN=caiD PE=3 SV=1
Length = 261
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G+DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ + + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ +++ LA+QL
Sbjct: 158 MVMTGRRMSAEEALRWGIVNRVV-SQSELMDSARELAQQL 196
>sp|Q5PIL1|CAID_SALPA Carnitinyl-CoA dehydratase OS=Salmonella paratyphi A (strain ATCC
9150 / SARB42) GN=caiD PE=3 SV=1
Length = 261
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G+DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ + + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ +++ LA+QL
Sbjct: 158 MVMTGRRMSAEEALRWGIVNRVV-SQSELMDSARELAQQL 196
>sp|Q57TJ1|CAID_SALCH Carnitinyl-CoA dehydratase OS=Salmonella choleraesuis (strain
SC-B67) GN=caiD PE=3 SV=1
Length = 261
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G+DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ + + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ +++ LA+QL
Sbjct: 158 MVMTGRRMSAEEALRWGIVNRVV-SQSELMDSARELAQQL 196
>sp|B5F749|CAID_SALA4 Carnitinyl-CoA dehydratase OS=Salmonella agona (strain SL483)
GN=caiD PE=3 SV=1
Length = 261
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G+DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ + + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ +++ LA+QL
Sbjct: 158 MVMTGRRMSAEEALRWGIVNRVV-SQSELMDSARELAQQL 196
>sp|Q8XA35|CAID_ECO57 Carnitinyl-CoA dehydratase OS=Escherichia coli O157:H7 GN=caiD PE=3
SV=3
Length = 261
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT + KFFS G+DL A A G A F P + + +L P +A
Sbjct: 50 AIITGAGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFNLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ D + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVC-ADNASFALPEAKLGI-VPDSGGVLRLPKILPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ + + LA+QL
Sbjct: 158 MVMTGRRMGAEEALRWGIVNRVV-SQAELMDNARELAQQL 196
>sp|A9MYJ5|CAID_SALPB Carnitinyl-CoA dehydratase OS=Salmonella paratyphi B (strain ATCC
BAA-1250 / SPB7) GN=caiD PE=3 SV=1
Length = 261
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G+DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ + + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ +++ LA+QL
Sbjct: 158 MVMTGRRMSAEEALRWGVVNRVV-SQSELMDSARELAQQL 196
>sp|B5FHG4|CAID_SALDC Carnitinyl-CoA dehydratase OS=Salmonella dublin (strain
CT_02021853) GN=caiD PE=3 SV=1
Length = 261
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G+DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ + + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ +++ LA+QL
Sbjct: 158 MVMTGRRMSAEEALRWGVVNRVV-SQSELMDSARELAQQL 196
>sp|P31551|CAID_ECOLI Carnitinyl-CoA dehydratase OS=Escherichia coli (strain K12) GN=caiD
PE=1 SV=4
Length = 261
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT + KFFS G+DL A A G A F P + + +L P +A
Sbjct: 50 AIITGAGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFNLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ D + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVC-ADNASFALPEAKLGI-VPDSGGVLRLPKILPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ + + LA+QL
Sbjct: 158 MVMTGRRMGAEEALRWGIVNRVV-SQAELMDNARELAQQL 196
>sp|B1IRE0|CAID_ECOLC Carnitinyl-CoA dehydratase OS=Escherichia coli (strain ATCC 8739 /
DSM 1576 / Crooks) GN=caiD PE=3 SV=1
Length = 261
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT + KFFS G+DL A A G A F P + + +L P +A
Sbjct: 50 AIITGAGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFNLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ D + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVC-ADNASFALPEAKLGI-VPDSGGVLRLPKILPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ + + LA+QL
Sbjct: 158 MVMTGRRMGAEEALRWGIVNRVV-SQAELMDNARELAQQL 196
>sp|C6DAL7|FADJ_PECCP Fatty acid oxidation complex subunit alpha OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=fadJ PE=3
SV=1
Length = 727
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 6/157 (3%)
Query: 32 DSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRP 91
ILS +A+ AT ++ +S F G D+ S A E+F
Sbjct: 47 QQILSVFEQARQHATLRGLILISSKPDSFIAGADITMLNQCRSAEQAENLAKQGQETFEQ 106
Query: 92 VVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRD-KGVLYMSEVDIGLTLPDYFA 150
+ A LP P VAA++G GL LAL+ DY + D K VL + EV +GL LP
Sbjct: 107 IAA----LPFPVVAAIHGACLGGGLELALACDYRVCSLDEKTVLGLPEVQLGL-LPGSGG 161
Query: 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAA 187
++ + D++L + ++ +ALR GLV+ A
Sbjct: 162 TQRLPRLIGLDSALDLILTGRHLRANQALRQGLVDEA 198
>sp|Q8FLA6|CAID_ECOL6 Carnitinyl-CoA dehydratase OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=caiD PE=3 SV=3
Length = 261
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT + KFFS G+DL A A G A F P + + +L P +A
Sbjct: 50 AIITGAGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFNLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ D + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVC-ADNASFALPEAKLGI-VPDSGGVLRLPKILPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ + + LA+QL
Sbjct: 158 MVMTGRRMGAEEALRWGVVNRVV-SQAELMDNARELAQQL 196
>sp|Q0TLV3|CAID_ECOL5 Carnitinyl-CoA dehydratase OS=Escherichia coli O6:K15:H31 (strain
536 / UPEC) GN=caiD PE=3 SV=1
Length = 261
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT + KFFS G+DL A A G A F P + + +L P +A
Sbjct: 50 AIITGAGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFNLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ D + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVC-ADNASFALPEAKLGI-VPDSGGVLRLPKILPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ + + LA+QL
Sbjct: 158 MVMTGRRMGAEEALRWGVVNRVV-SQAELMDNARELAQQL 196
>sp|Q7N288|FADJ_PHOLL Fatty acid oxidation complex subunit alpha OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=fadJ PE=3
SV=2
Length = 727
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 80/158 (50%), Gaps = 6/158 (3%)
Query: 31 IDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFR 90
+D L+ +A+ + ++ + F G D++ ++ AR+ + E +
Sbjct: 51 VDQFLNVFKQAQQSSGLKGLILISGKPDTFIAGADISMIAGCKTKEDARD----LAEKGQ 106
Query: 91 PVVAAMMDLPMPTVAAVNGHAAAAGLTLALS-HDYVIMRRDKGVLYMSEVDIGLTLPDYF 149
+ + + + P+P VAA++G GL LAL+ H V + DK L + EV +GL LP
Sbjct: 107 KLFSQIANYPLPVVAAIHGACLGGGLELALACHWRVCSQDDKTRLGLPEVQLGL-LPGSG 165
Query: 150 AALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAA 187
++ ++ D++L K+++ ++ALR+GLV+ A
Sbjct: 166 GTQRLPRLIGVSSALDIMLTGKQLRAKQALRLGLVDDA 203
>sp|B1LFW9|CAID_ECOSM Carnitinyl-CoA dehydratase OS=Escherichia coli (strain SMS-3-5 /
SECEC) GN=caiD PE=3 SV=1
Length = 261
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT + KFFS G+DL A A G A F P + + +L P +A
Sbjct: 50 AIITGAGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFNLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ D + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVC-ADNASFALPEAKLGI-VPDSGGVLRLPKILPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ + + LA+QL
Sbjct: 158 MVMTGRRMGAEEALRWGVVNRVV-SQAELMDNARELAQQL 196
>sp|A0PJR5|ECHD3_DANRE Enoyl-CoA hydratase domain-containing protein 3, mitochondrial
OS=Danio rerio GN=echdc3 PE=2 SV=2
Length = 289
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 14/159 (8%)
Query: 51 LITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGH 110
+I ++ G FS+G DL +A R H E ++ + DLP+P +A VNG
Sbjct: 77 IIISAVGPVFSSGHDLQELSSAEGSDLPRRVFHSCSE----LMMLIQDLPVPVIAMVNGV 132
Query: 111 AAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARR---DVL 167
A AAG L S D V + +K V++GL F + +G R+ +L
Sbjct: 133 ATAAGCQLVASCD-VAVASEKSTFATPGVNVGL-----FCSTPAVAIGRTVPRKIAMQML 186
Query: 168 LRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA 206
L + + ++AL+ GL+ A + SEE++ + ++ +A+++
Sbjct: 187 LTGRPLSAQQALQHGLLSAVF-SEERLEDETLAIARRVC 224
>sp|Q96DC8|ECHD3_HUMAN Enoyl-CoA hydratase domain-containing protein 3, mitochondrial
OS=Homo sapiens GN=ECHDC3 PE=1 SV=2
Length = 303
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 86/198 (43%), Gaps = 22/198 (11%)
Query: 51 LITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDL---PMPTVAAV 107
+I ++ G FS+G DL R Y E F+ MM + P+P +A V
Sbjct: 94 IIISAEGPVFSSGHDLKELTEEQGRD-------YHAEVFQTCSKVMMHIRNHPVPVIAMV 146
Query: 108 NGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARR--- 164
NG AAAAG L S D + DK V++GL AL R A R+
Sbjct: 147 NGLAAAAGCQLVASCDIAVA-SDKSSFATPGVNVGLFCSTPGVALAR-----AVPRKVAL 200
Query: 165 DVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA--GRKWAGEVYAEIRKSL 222
++L + I +EAL GL+ E ++ E +MR+A+++A R A K L
Sbjct: 201 EMLFTGEPISAQEALLHGLLSKVV-PEAELQEETMRIARKIASLSRPVVSLGKATFYKQL 259
Query: 223 CPDLCGVLGLDMRAVVSN 240
DL L +A+V N
Sbjct: 260 PQDLGTAYYLTSQAMVDN 277
>sp|B5RGA4|CAID_SALG2 Carnitinyl-CoA dehydratase OS=Salmonella gallinarum (strain 287/91
/ NCTC 13346) GN=caiD PE=3 SV=1
Length = 261
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 9/156 (5%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNG 109
A+IT KFFS G+DL A A G A + F + + DL P +AAVNG
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA----DFGSGGFAGLTE-IFDLDKPVIAAVNG 103
Query: 110 HAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLR 169
+A G LAL+ D+++ + + E +G+ +PD L K+ ++++
Sbjct: 104 YAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNEMVMT 161
Query: 170 AKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ EEALR G+V S+ ++ +++ LA+QL
Sbjct: 162 GRRMSAEEALRWGVVNRVV-SQSELMDSARELAQQL 196
>sp|B5R1Q9|CAID_SALEP Carnitinyl-CoA dehydratase OS=Salmonella enteritidis PT4 (strain
P125109) GN=caiD PE=3 SV=1
Length = 261
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 9/156 (5%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNG 109
A+IT KFFS G+DL A A G A + F + + DL P +AAVNG
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA----DFGSGGFAGLTE-IFDLDKPVIAAVNG 103
Query: 110 HAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLR 169
+A G LAL+ D+++ + + E +G+ +PD L K+ ++++
Sbjct: 104 YAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNEMVMT 161
Query: 170 AKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ EEALR G+V S+ ++ +++ LA+QL
Sbjct: 162 GRRMSAEEALRWGVVNRVV-SQSELMDSARELAQQL 196
>sp|B1JP63|FADB_YERPY Fatty acid oxidation complex subunit alpha OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=fadB
PE=3 SV=1
Length = 729
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 68/129 (52%), Gaps = 2/129 (1%)
Query: 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEV 139
E+LH + + + DLP+PT++A+NG+A G L+ D+ I + + + E
Sbjct: 82 EKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARI-GLPET 140
Query: 140 DIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASM 199
+G+ +P + ++ ++ A + +++ K + +AL++GLV+A D E+ V A
Sbjct: 141 KLGI-MPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVVDPEKLVGSALT 199
Query: 200 RLAKQLAGR 208
L + + G+
Sbjct: 200 MLKQAIDGK 208
>sp|A4TR27|FADB_YERPP Fatty acid oxidation complex subunit alpha OS=Yersinia pestis
(strain Pestoides F) GN=fadB PE=3 SV=1
Length = 729
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 68/129 (52%), Gaps = 2/129 (1%)
Query: 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEV 139
E+LH + + + DLP+PT++A+NG+A G L+ D+ I + + + E
Sbjct: 82 EKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARI-GLPET 140
Query: 140 DIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASM 199
+G+ +P + ++ ++ A + +++ K + +AL++GLV+A D E+ V A
Sbjct: 141 KLGI-MPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVVDPEKLVGSALT 199
Query: 200 RLAKQLAGR 208
L + + G+
Sbjct: 200 MLKQAIDGK 208
>sp|Q1CN99|FADB_YERPN Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv.
Antiqua (strain Nepal516) GN=fadB PE=3 SV=1
Length = 729
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 68/129 (52%), Gaps = 2/129 (1%)
Query: 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEV 139
E+LH + + + DLP+PT++A+NG+A G L+ D+ I + + + E
Sbjct: 82 EKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARI-GLPET 140
Query: 140 DIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASM 199
+G+ +P + ++ ++ A + +++ K + +AL++GLV+A D E+ V A
Sbjct: 141 KLGI-MPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVVDPEKLVGSALT 199
Query: 200 RLAKQLAGR 208
L + + G+
Sbjct: 200 MLKQAIDGK 208
>sp|A9R754|FADB_YERPG Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv.
Antiqua (strain Angola) GN=fadB PE=3 SV=1
Length = 729
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 68/129 (52%), Gaps = 2/129 (1%)
Query: 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEV 139
E+LH + + + DLP+PT++A+NG+A G L+ D+ I + + + E
Sbjct: 82 EKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARI-GLPET 140
Query: 140 DIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASM 199
+G+ +P + ++ ++ A + +++ K + +AL++GLV+A D E+ V A
Sbjct: 141 KLGI-MPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVVDPEKLVGSALT 199
Query: 200 RLAKQLAGR 208
L + + G+
Sbjct: 200 MLKQAIDGK 208
>sp|Q8ZAN0|FADB_YERPE Fatty acid oxidation complex subunit alpha OS=Yersinia pestis
GN=fadB PE=3 SV=1
Length = 729
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 68/129 (52%), Gaps = 2/129 (1%)
Query: 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEV 139
E+LH + + + DLP+PT++A+NG+A G L+ D+ I + + + E
Sbjct: 82 EKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARI-GLPET 140
Query: 140 DIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASM 199
+G+ +P + ++ ++ A + +++ K + +AL++GLV+A D E+ V A
Sbjct: 141 KLGI-MPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVVDPEKLVGSALT 199
Query: 200 RLAKQLAGR 208
L + + G+
Sbjct: 200 MLKQAIDGK 208
>sp|Q1C2C4|FADB_YERPA Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv.
Antiqua (strain Antiqua) GN=fadB PE=3 SV=1
Length = 729
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 68/129 (52%), Gaps = 2/129 (1%)
Query: 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEV 139
E+LH + + + DLP+PT++A+NG+A G L+ D+ I + + + E
Sbjct: 82 EKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARI-GLPET 140
Query: 140 DIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASM 199
+G+ +P + ++ ++ A + +++ K + +AL++GLV+A D E+ V A
Sbjct: 141 KLGI-MPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVVDPEKLVGSALT 199
Query: 200 RLAKQLAGR 208
L + + G+
Sbjct: 200 MLKQAIDGK 208
>sp|Q66FR8|FADB_YERPS Fatty acid oxidation complex subunit alpha OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=fadB
PE=3 SV=1
Length = 729
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 68/129 (52%), Gaps = 2/129 (1%)
Query: 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEV 139
E+LH + + + DLP+PT++A+NG+A G L+ D+ I + + + E
Sbjct: 82 EKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARI-GLPET 140
Query: 140 DIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASM 199
+G+ +P + ++ ++ A + +++ K + +AL++GLV+A D E+ V A
Sbjct: 141 KLGI-MPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVVDPEKLVGSALT 199
Query: 200 RLAKQLAGR 208
L + + G+
Sbjct: 200 MLKQAIDGK 208
>sp|B2K0Z6|FADB_YERPB Fatty acid oxidation complex subunit alpha OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=fadB
PE=3 SV=1
Length = 729
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 68/129 (52%), Gaps = 2/129 (1%)
Query: 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEV 139
E+LH + + + DLP+PT++A+NG+A G L+ D+ I + + + E
Sbjct: 82 EKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARI-GLPET 140
Query: 140 DIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASM 199
+G+ +P + ++ ++ A + +++ K + +AL++GLV+A D E+ V A
Sbjct: 141 KLGI-MPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVVDPEKLVGSALT 199
Query: 200 RLAKQLAGR 208
L + + G+
Sbjct: 200 MLKQAIDGK 208
>sp|A7FDF2|FADB_YERP3 Fatty acid oxidation complex subunit alpha OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=fadB PE=3 SV=1
Length = 729
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 68/129 (52%), Gaps = 2/129 (1%)
Query: 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEV 139
E+LH + + + DLP+PT++A+NG+A G L+ D+ I + + + E
Sbjct: 82 EKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARI-GLPET 140
Query: 140 DIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASM 199
+G+ +P + ++ ++ A + +++ K + +AL++GLV+A D E+ V A
Sbjct: 141 KLGI-MPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVVDPEKLVGSALT 199
Query: 200 RLAKQLAGR 208
L + + G+
Sbjct: 200 MLKQAIDGK 208
>sp|A3QFP3|FADJ_SHELP Fatty acid oxidation complex subunit alpha OS=Shewanella loihica
(strain ATCC BAA-1088 / PV-4) GN=fadJ PE=3 SV=1
Length = 706
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 10/162 (6%)
Query: 25 RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHY 84
FGP I +A+ KA+A +I + F G D++ A + ARE
Sbjct: 32 EFGP----EICEMLAEIKADAGIRGVVIISGKKDSFVAGADISMLDACATAEDARE---- 83
Query: 85 MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALS-HDYVIMRRDKGVLYMSEVDIGL 143
+ + V A+ L +P VAA+NG GL LAL+ H V +K +L + EV +GL
Sbjct: 84 LSKQGHEVFFALESLSIPVVAAINGACLGGGLELALACHQRVCTDSNKTMLGLPEVQLGL 143
Query: 144 TLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVE 185
VG A + D++L K+++ ++AL+MGLV+
Sbjct: 144 LPGGGGTQRLPRLVGIAKS-LDMMLTGKQLRAKQALKMGLVD 184
>sp|Q7MZ92|FADB_PHOLL Fatty acid oxidation complex subunit alpha OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=fadB PE=3
SV=1
Length = 728
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
Query: 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEV 139
E+L + + + DLP+PT++A+NG+A G LS D+ + D + + E
Sbjct: 82 EKLQEWLNFSNSIFNRIEDLPVPTISAINGYALGGGCECVLSTDFRVASPDIRI-GLPET 140
Query: 140 DIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASM 199
+G+ +P + ++ ++ D++ K I EEAL+ GL++A E+ V A
Sbjct: 141 KLGI-MPGFGGSVRLPRLIGTDNALDIIAAGKDIGAEEALKNGLIDAVVPKEKLVDSAVS 199
Query: 200 RLAKQLAGR 208
L + +AG
Sbjct: 200 MLEQAIAGN 208
>sp|Q6D2L7|FADJ_ERWCT Fatty acid oxidation complex subunit alpha OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=fadJ PE=3 SV=1
Length = 731
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 6/157 (3%)
Query: 32 DSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRP 91
+ ILS A+ AT + ++ F G D+ S A E+F
Sbjct: 51 EQILSVFELARQHATLRGLIFISAKPDSFIAGADITMLNKCSSAEQAENLAKQGQETFDQ 110
Query: 92 VVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRD-KGVLYMSEVDIGLTLPDYFA 150
+ A LP P VAA++G GL LAL+ DY + D K VL + EV +GL LP
Sbjct: 111 IAA----LPFPVVAAIHGACLGGGLELALACDYRVCSLDEKTVLGLPEVQLGL-LPGSGG 165
Query: 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAA 187
++ + D++L + ++ +ALR GLV+ A
Sbjct: 166 TQRLPRLIGLDSALDLILTGRHLRAGQALRQGLVDEA 202
>sp|Q668V1|FADJ_YERPS Fatty acid oxidation complex subunit alpha OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=fadJ
PE=3 SV=2
Length = 753
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 6/155 (3%)
Query: 32 DSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRP 91
D I + + +A A +I + F G D+ A + AR + + +
Sbjct: 44 DQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDAR----VLAQKGQS 99
Query: 92 VVAAMMDLPMPTVAAVNGHAAAAGLTLALS-HDYVIMRRDKGVLYMSEVDIGLTLPDYFA 150
++A + P+P VAA++G GL LAL+ H + DK VL + EV +GL LP
Sbjct: 100 ILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGL-LPGSGG 158
Query: 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVE 185
++ + D++L K+I+ +AL+MGLV+
Sbjct: 159 TQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVD 193
>sp|Q1CHK2|FADJ_YERPN Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv.
Antiqua (strain Nepal516) GN=fadJ PE=3 SV=2
Length = 747
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 6/155 (3%)
Query: 32 DSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRP 91
D I + + +A A +I + F G D+ A + AR + + +
Sbjct: 44 DQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDAR----VLAQKGQS 99
Query: 92 VVAAMMDLPMPTVAAVNGHAAAAGLTLALS-HDYVIMRRDKGVLYMSEVDIGLTLPDYFA 150
++A + P+P VAA++G GL LAL+ H + DK VL + EV +GL LP
Sbjct: 100 ILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGL-LPGSGG 158
Query: 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVE 185
++ + D++L K+I+ +AL+MGLV+
Sbjct: 159 TQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVD 193
>sp|Q8ZD45|FADJ_YERPE Fatty acid oxidation complex subunit alpha OS=Yersinia pestis
GN=fadJ PE=3 SV=2
Length = 747
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 6/155 (3%)
Query: 32 DSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRP 91
D I + + +A A +I + F G D+ A + AR + + +
Sbjct: 44 DQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDAR----VLAQKGQS 99
Query: 92 VVAAMMDLPMPTVAAVNGHAAAAGLTLALS-HDYVIMRRDKGVLYMSEVDIGLTLPDYFA 150
++A + P+P VAA++G GL LAL+ H + DK VL + EV +GL LP
Sbjct: 100 ILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGL-LPGSGG 158
Query: 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVE 185
++ + D++L K+I+ +AL+MGLV+
Sbjct: 159 TQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVD 193
>sp|Q1C660|FADJ_YERPA Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv.
Antiqua (strain Antiqua) GN=fadJ PE=3 SV=2
Length = 747
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 6/155 (3%)
Query: 32 DSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRP 91
D I + + +A A +I + F G D+ A + AR + + +
Sbjct: 44 DQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDAR----VLAQKGQS 99
Query: 92 VVAAMMDLPMPTVAAVNGHAAAAGLTLALS-HDYVIMRRDKGVLYMSEVDIGLTLPDYFA 150
++A + P+P VAA++G GL LAL+ H + DK VL + EV +GL LP
Sbjct: 100 ILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGL-LPGSGG 158
Query: 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVE 185
++ + D++L K+I+ +AL+MGLV+
Sbjct: 159 TQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVD 193
>sp|A7FGK1|FADJ_YERP3 Fatty acid oxidation complex subunit alpha OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=fadJ PE=3 SV=1
Length = 747
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 6/155 (3%)
Query: 32 DSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRP 91
D I + + +A A +I + F G D+ A + AR + + +
Sbjct: 44 DQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDAR----VLAQKGQS 99
Query: 92 VVAAMMDLPMPTVAAVNGHAAAAGLTLALS-HDYVIMRRDKGVLYMSEVDIGLTLPDYFA 150
++A + P+P VAA++G GL LAL+ H + DK VL + EV +GL LP
Sbjct: 100 ILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGL-LPGSGG 158
Query: 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVE 185
++ + D++L K+I+ +AL+MGLV+
Sbjct: 159 TQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVD 193
>sp|A4TM82|FADJ_YERPP Fatty acid oxidation complex subunit alpha OS=Yersinia pestis
(strain Pestoides F) GN=fadJ PE=3 SV=1
Length = 774
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 6/155 (3%)
Query: 32 DSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRP 91
D I + + +A A +I + F G D+ A + AR + + +
Sbjct: 71 DQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDAR----VLAQKGQS 126
Query: 92 VVAAMMDLPMPTVAAVNGHAAAAGLTLALS-HDYVIMRRDKGVLYMSEVDIGLTLPDYFA 150
++A + P+P VAA++G GL LAL+ H + DK VL + EV +GL LP
Sbjct: 127 ILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGL-LPGSGG 185
Query: 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVE 185
++ + D++L K+I+ +AL+MGLV+
Sbjct: 186 TQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVD 220
>sp|Q869N6|CRTL_DICDI 3-hydroxybutyryl-CoA dehydratase-like protein, mitochondrial
OS=Dictyostelium discoideum GN=DDB_G0271866 PE=3 SV=1
Length = 299
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 11/167 (6%)
Query: 43 AEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMP 102
AE ++ T GK FS G DL + T E ++E F + LP+P
Sbjct: 75 AEDKDLKCVVLTGEGKAFSAGGDLDFLIERTKDTP--ENNQRIMERFYRTFLYIRSLPVP 132
Query: 103 TVAAVNGHAAAAGLTLALSHDYVIMRRDKGV-LYMSEVDI--GLTLPDYFAALFRAKVGS 159
++A+NG A AG LAL+ D ++ V L +++ I G+ + + V S
Sbjct: 133 IISAINGAAIGAGFCLALATDIRVVSNKAPVGLTFTKLGIHPGMGVTHSITNIVGQDVAS 192
Query: 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA 206
+LL + IKG+EA R+GLV + +S +QV ++ LA+ ++
Sbjct: 193 Y-----MLLSSDIIKGDEAQRLGLVLKSVES-DQVLPTALNLAETIS 233
>sp|A1JK30|FADJ_YERE8 Fatty acid oxidation complex subunit alpha OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=fadJ PE=3 SV=2
Length = 745
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 6/136 (4%)
Query: 51 LITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGH 110
+I + F G D+ A + AR + + + ++A + P+P VAA++G
Sbjct: 75 VIISGKPDSFIAGADITMIAACHTAQDAR----ILAQKGQSILAQIAAFPVPVVAAIHGA 130
Query: 111 AAAAGLTLALS-HDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLR 169
GL LAL+ H + + DK VL + EV +GL LP ++ + D++L
Sbjct: 131 CLGGGLELALACHSRICSQDDKTVLGLPEVQLGL-LPGSGGTQRLPRLVGVSKALDMILT 189
Query: 170 AKKIKGEEALRMGLVE 185
++++ +AL+MGLV+
Sbjct: 190 GRQVRARQALKMGLVD 205
>sp|B0TL21|FADJ_SHEHH Fatty acid oxidation complex subunit alpha OS=Shewanella
halifaxensis (strain HAW-EB4) GN=fadJ PE=3 SV=1
Length = 708
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 13/188 (6%)
Query: 25 RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHY 84
FGP I +A+ KA+ + ++ + F G D++ A + T A++
Sbjct: 34 EFGP----EISDVLAEIKADTSIKGLVLVSGKKDSFVAGADISMLDACETATDAKQ---- 85
Query: 85 MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALS-HDYVIMRRDKGVLYMSEVDIGL 143
+ + V + LP+P VAA+NG GL LAL+ H V K ++ + EV +GL
Sbjct: 86 LSQQGHVVFNELESLPIPVVAAINGACLGGGLELALACHKRVCSLNPKTMMGVPEVQLGL 145
Query: 144 TLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAK 203
VG TA D++L K+++ ++AL+MGLV+ A E + ++ +A
Sbjct: 146 LPGGGGTQRLPRLVGVTTA-LDMMLTGKQLRPKQALKMGLVDDAV-PESILLRTAVEMA- 202
Query: 204 QLAGRKWA 211
LAG++ A
Sbjct: 203 -LAGKRPA 209
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,960,934
Number of Sequences: 539616
Number of extensions: 3077493
Number of successful extensions: 10011
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 183
Number of HSP's that attempted gapping in prelim test: 9697
Number of HSP's gapped (non-prelim): 359
length of query: 243
length of database: 191,569,459
effective HSP length: 114
effective length of query: 129
effective length of database: 130,053,235
effective search space: 16776867315
effective search space used: 16776867315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)