Query 026127
Match_columns 243
No_of_seqs 160 out of 1314
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:06:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02267 enoyl-CoA hydratase/i 100.0 3.4E-50 7.3E-55 335.4 27.5 232 1-239 1-233 (239)
2 PRK08139 enoyl-CoA hydratase; 100.0 1.8E-50 4E-55 342.3 23.9 212 1-225 12-223 (266)
3 PRK09120 p-hydroxycinnamoyl Co 100.0 5.3E-50 1.1E-54 340.9 24.8 216 2-227 10-226 (275)
4 PRK05980 enoyl-CoA hydratase; 100.0 4.8E-50 1E-54 339.0 23.9 215 2-226 5-221 (260)
5 PRK09674 enoyl-CoA hydratase-i 100.0 7.9E-50 1.7E-54 336.6 23.3 209 1-225 3-212 (255)
6 PRK06142 enoyl-CoA hydratase; 100.0 9.9E-50 2.1E-54 339.1 24.0 217 2-226 8-231 (272)
7 PRK05862 enoyl-CoA hydratase; 100.0 9.3E-50 2E-54 336.6 23.4 209 2-226 6-215 (257)
8 PRK06190 enoyl-CoA hydratase; 100.0 1E-49 2.2E-54 335.9 23.4 210 1-226 5-215 (258)
9 PRK06143 enoyl-CoA hydratase; 100.0 1.2E-49 2.6E-54 335.5 23.7 210 2-225 8-219 (256)
10 PRK05995 enoyl-CoA hydratase; 100.0 1.3E-49 2.9E-54 336.6 23.9 213 2-225 6-218 (262)
11 PRK06563 enoyl-CoA hydratase; 100.0 1.3E-49 2.9E-54 335.3 23.0 212 2-226 1-213 (255)
12 TIGR03210 badI 2-ketocyclohexa 100.0 2E-49 4.2E-54 334.3 24.0 210 2-225 4-214 (256)
13 PRK08150 enoyl-CoA hydratase; 100.0 2.2E-49 4.7E-54 333.8 23.9 209 1-225 3-212 (255)
14 PRK07260 enoyl-CoA hydratase; 100.0 2.6E-49 5.6E-54 333.6 24.2 217 2-228 4-221 (255)
15 PRK05674 gamma-carboxygeranoyl 100.0 1.7E-49 3.6E-54 336.2 22.9 215 2-227 7-222 (265)
16 PRK06144 enoyl-CoA hydratase; 100.0 3.8E-49 8.2E-54 333.6 24.7 213 2-227 10-225 (262)
17 TIGR02280 PaaB1 phenylacetate 100.0 4.6E-49 9.9E-54 332.3 24.6 213 2-226 1-214 (256)
18 PRK08258 enoyl-CoA hydratase; 100.0 4.4E-49 9.6E-54 335.8 24.7 216 2-226 19-235 (277)
19 PRK09245 enoyl-CoA hydratase; 100.0 3.8E-49 8.3E-54 334.5 23.8 217 1-226 4-224 (266)
20 PRK07658 enoyl-CoA hydratase; 100.0 4.2E-49 9.2E-54 332.7 23.7 210 2-225 4-214 (257)
21 PRK09076 enoyl-CoA hydratase; 100.0 5.5E-49 1.2E-53 332.0 24.3 209 2-225 5-215 (258)
22 PRK05869 enoyl-CoA hydratase; 100.0 7.9E-49 1.7E-53 323.8 24.6 204 7-225 15-219 (222)
23 PRK08140 enoyl-CoA hydratase; 100.0 7.8E-49 1.7E-53 332.0 24.8 215 2-227 6-221 (262)
24 PRK08138 enoyl-CoA hydratase; 100.0 5.2E-49 1.1E-53 332.7 23.3 208 2-225 9-218 (261)
25 PRK06127 enoyl-CoA hydratase; 100.0 8.8E-49 1.9E-53 332.6 24.6 213 2-226 13-227 (269)
26 PRK07327 enoyl-CoA hydratase; 100.0 9E-49 1.9E-53 332.4 24.6 212 2-225 13-226 (268)
27 PRK06023 enoyl-CoA hydratase; 100.0 9.7E-49 2.1E-53 329.3 24.2 209 2-225 5-217 (251)
28 PRK05809 3-hydroxybutyryl-CoA 100.0 1.2E-48 2.7E-53 330.4 24.2 211 2-226 6-218 (260)
29 PRK07511 enoyl-CoA hydratase; 100.0 1.1E-48 2.4E-53 330.6 24.0 213 2-225 5-218 (260)
30 PLN02664 enoyl-CoA hydratase/d 100.0 1.2E-48 2.6E-53 332.8 23.9 215 4-226 12-233 (275)
31 KOG1680 Enoyl-CoA hydratase [L 100.0 1E-49 2.2E-54 325.7 16.3 212 4-231 41-253 (290)
32 PLN02600 enoyl-CoA hydratase 100.0 1.1E-48 2.4E-53 328.9 23.0 205 7-225 2-208 (251)
33 TIGR01929 menB naphthoate synt 100.0 1.4E-48 3.1E-53 329.6 23.6 211 2-225 4-217 (259)
34 PRK07657 enoyl-CoA hydratase; 100.0 1.3E-48 2.7E-53 330.3 23.3 210 2-225 5-217 (260)
35 PRK07799 enoyl-CoA hydratase; 100.0 1.2E-48 2.6E-53 330.9 23.2 213 1-225 6-220 (263)
36 PF00378 ECH: Enoyl-CoA hydrat 100.0 7.1E-49 1.5E-53 329.3 21.4 215 3-231 1-216 (245)
37 PRK07468 enoyl-CoA hydratase; 100.0 1.8E-48 3.9E-53 329.6 23.6 213 2-225 6-219 (262)
38 PRK08252 enoyl-CoA hydratase; 100.0 1.7E-48 3.8E-53 328.3 23.4 206 2-225 5-211 (254)
39 PRK05981 enoyl-CoA hydratase; 100.0 2E-48 4.4E-53 330.1 23.5 216 2-226 6-224 (266)
40 PRK06688 enoyl-CoA hydratase; 100.0 2.2E-48 4.7E-53 328.8 23.5 210 2-226 7-217 (259)
41 PRK07110 polyketide biosynthes 100.0 2.8E-48 6E-53 326.1 23.9 213 2-231 7-220 (249)
42 PRK05864 enoyl-CoA hydratase; 100.0 3.1E-48 6.7E-53 330.4 23.5 215 2-225 11-230 (276)
43 PRK08259 enoyl-CoA hydratase; 100.0 2E-48 4.4E-53 327.7 22.1 208 2-225 5-213 (254)
44 PRK07659 enoyl-CoA hydratase; 100.0 3.6E-48 7.7E-53 327.4 23.5 209 2-225 8-217 (260)
45 PLN02888 enoyl-CoA hydratase 100.0 3.1E-48 6.7E-53 328.4 23.1 208 2-226 11-220 (265)
46 PRK06213 enoyl-CoA hydratase; 100.0 1.1E-47 2.4E-52 318.8 26.0 215 2-232 5-219 (229)
47 PRK05870 enoyl-CoA hydratase; 100.0 1.8E-48 3.9E-53 327.3 21.1 209 2-226 5-214 (249)
48 PRK08260 enoyl-CoA hydratase; 100.0 4.4E-48 9.6E-53 332.4 23.9 215 2-225 6-234 (296)
49 PRK03580 carnitinyl-CoA dehydr 100.0 4.3E-48 9.4E-53 327.1 23.1 208 2-225 5-214 (261)
50 PRK06494 enoyl-CoA hydratase; 100.0 4.2E-48 9.1E-53 326.8 22.9 207 2-225 6-214 (259)
51 PRK07938 enoyl-CoA hydratase; 100.0 4.3E-48 9.3E-53 324.8 22.5 206 4-225 6-211 (249)
52 PLN03214 probable enoyl-CoA hy 100.0 1.1E-47 2.5E-52 326.7 25.3 218 2-231 13-234 (278)
53 PRK06495 enoyl-CoA hydratase; 100.0 7.7E-48 1.7E-52 324.9 23.8 209 2-225 6-214 (257)
54 PRK07396 dihydroxynaphthoic ac 100.0 7.5E-48 1.6E-52 327.4 23.9 211 2-225 15-227 (273)
55 TIGR03189 dienoyl_CoA_hyt cycl 100.0 1E-47 2.3E-52 322.7 23.8 205 2-226 3-208 (251)
56 COG1024 CaiD Enoyl-CoA hydrata 100.0 9.5E-48 2.1E-52 324.5 23.3 213 2-227 7-220 (257)
57 PRK11423 methylmalonyl-CoA dec 100.0 1.1E-47 2.5E-52 324.3 23.6 207 2-224 6-215 (261)
58 PRK06210 enoyl-CoA hydratase; 100.0 7.4E-48 1.6E-52 327.6 22.4 215 2-225 7-229 (272)
59 PRK08290 enoyl-CoA hydratase; 100.0 1.8E-47 4E-52 327.0 24.4 216 2-227 6-238 (288)
60 PRK06072 enoyl-CoA hydratase; 100.0 2.5E-47 5.4E-52 320.1 24.5 206 1-227 1-207 (248)
61 PRK07509 enoyl-CoA hydratase; 100.0 4.2E-47 9E-52 321.5 24.0 213 2-226 5-221 (262)
62 PRK08272 enoyl-CoA hydratase; 100.0 1.2E-46 2.7E-51 324.3 25.1 215 2-227 12-246 (302)
63 PRK07827 enoyl-CoA hydratase; 100.0 4.9E-47 1.1E-51 320.6 22.2 212 2-227 8-220 (260)
64 PRK07854 enoyl-CoA hydratase; 100.0 1.3E-46 2.7E-51 314.9 23.0 200 1-224 1-201 (243)
65 PLN02921 naphthoate synthase 100.0 1.8E-46 3.9E-51 324.8 24.7 211 2-225 67-281 (327)
66 PRK07112 polyketide biosynthes 100.0 3.5E-46 7.6E-51 314.4 23.7 207 2-224 6-212 (255)
67 PRK12478 enoyl-CoA hydratase; 100.0 2.5E-46 5.3E-51 321.3 23.1 214 2-227 7-231 (298)
68 PRK08321 naphthoate synthase; 100.0 5.7E-46 1.2E-50 319.8 24.4 215 2-225 25-256 (302)
69 PRK08788 enoyl-CoA hydratase; 100.0 1.4E-45 3E-50 314.0 24.8 214 2-224 19-242 (287)
70 PLN02157 3-hydroxyisobutyryl-C 100.0 2E-45 4.3E-50 324.6 24.1 211 2-224 39-250 (401)
71 PRK05617 3-hydroxyisobutyryl-C 100.0 8.6E-46 1.9E-50 323.3 20.0 213 2-225 5-281 (342)
72 PLN02874 3-hydroxyisobutyryl-C 100.0 9.3E-45 2E-49 320.4 22.7 184 2-196 13-197 (379)
73 TIGR03200 dearomat_oah 6-oxocy 100.0 8.8E-44 1.9E-48 306.2 23.6 206 10-224 38-257 (360)
74 KOG1681 Enoyl-CoA isomerase [L 100.0 2.8E-45 6E-50 291.0 11.9 218 7-231 29-254 (292)
75 PLN02988 3-hydroxyisobutyryl-C 100.0 1.4E-43 2.9E-48 311.9 23.1 210 2-223 11-221 (381)
76 TIGR03222 benzo_boxC benzoyl-C 100.0 5.2E-43 1.1E-47 319.3 21.7 210 3-226 261-498 (546)
77 PRK08184 benzoyl-CoA-dihydrodi 100.0 6.9E-43 1.5E-47 319.4 21.4 210 3-226 265-502 (550)
78 PRK11730 fadB multifunctional 100.0 2.4E-42 5.2E-47 326.8 24.8 198 2-208 8-207 (715)
79 PLN02851 3-hydroxyisobutyryl-C 100.0 1.2E-41 2.6E-46 300.5 24.2 196 2-207 44-240 (407)
80 cd06558 crotonase-like Crotona 100.0 1.7E-41 3.6E-46 275.1 22.5 194 2-205 1-195 (195)
81 PRK11154 fadJ multifunctional 100.0 2.9E-41 6.2E-46 319.4 24.4 192 3-204 8-204 (708)
82 TIGR02440 FadJ fatty oxidation 100.0 4.8E-41 1E-45 317.2 24.6 189 5-203 6-198 (699)
83 TIGR02437 FadB fatty oxidation 100.0 1.6E-40 3.5E-45 313.8 23.4 197 2-207 8-206 (714)
84 TIGR02441 fa_ox_alpha_mit fatt 100.0 2.3E-40 5E-45 313.4 23.5 199 2-208 15-228 (737)
85 KOG0016 Enoyl-CoA hydratase/is 100.0 2E-40 4.4E-45 268.7 19.7 221 2-231 9-233 (266)
86 TIGR03222 benzo_boxC benzoyl-C 100.0 2.7E-40 5.9E-45 301.5 22.8 219 2-225 13-251 (546)
87 KOG1679 Enoyl-CoA hydratase [L 100.0 1.7E-40 3.8E-45 261.6 13.6 211 6-229 37-252 (291)
88 PRK08184 benzoyl-CoA-dihydrodi 100.0 4.8E-39 1.1E-43 294.1 23.1 205 2-212 17-237 (550)
89 COG0447 MenB Dihydroxynaphthoi 100.0 2.4E-38 5.2E-43 249.8 11.2 212 2-225 20-236 (282)
90 KOG1682 Enoyl-CoA isomerase [L 100.0 8E-36 1.7E-40 233.6 15.6 209 4-225 36-244 (287)
91 KOG1684 Enoyl-CoA hydratase [L 100.0 2.3E-31 5E-36 224.4 14.1 186 2-196 40-227 (401)
92 cd07020 Clp_protease_NfeD_1 No 99.9 1.6E-21 3.5E-26 157.0 14.9 152 10-197 1-172 (187)
93 cd07014 S49_SppA Signal peptid 99.8 1.6E-20 3.5E-25 150.0 13.1 144 28-196 21-174 (177)
94 cd07019 S49_SppA_1 Signal pept 99.7 5.3E-17 1.2E-21 133.1 12.8 104 9-135 1-104 (211)
95 cd00394 Clp_protease_like Case 99.7 6.9E-16 1.5E-20 121.3 12.2 135 26-187 8-161 (161)
96 cd07023 S49_Sppa_N_C Signal pe 99.7 5.5E-16 1.2E-20 126.9 11.8 96 10-135 2-100 (208)
97 cd07022 S49_Sppa_36K_type Sign 99.7 1.1E-15 2.4E-20 125.7 11.9 90 22-135 17-107 (214)
98 TIGR00706 SppA_dom signal pept 99.6 6.7E-15 1.4E-19 120.4 12.2 154 10-200 2-204 (207)
99 cd07016 S14_ClpP_1 Caseinolyti 99.6 6.2E-15 1.4E-19 115.8 11.2 129 29-187 15-160 (160)
100 TIGR00705 SppA_67K signal pept 99.6 1.1E-14 2.5E-19 135.4 12.2 173 6-208 306-524 (584)
101 cd07021 Clp_protease_NfeD_like 99.5 4.8E-13 1E-17 106.6 14.0 151 10-196 1-177 (178)
102 cd07018 S49_SppA_67K_type Sign 99.5 2.6E-13 5.7E-18 112.1 10.2 145 26-197 26-219 (222)
103 cd07015 Clp_protease_NfeD Nodu 99.3 5.4E-10 1.2E-14 88.3 16.0 151 11-196 2-171 (172)
104 KOG1683 Hydroxyacyl-CoA dehydr 99.1 2.9E-11 6.4E-16 103.8 2.8 188 9-207 66-258 (380)
105 PRK10949 protease 4; Provision 99.0 5.5E-09 1.2E-13 97.8 13.8 166 7-201 325-539 (618)
106 cd07013 S14_ClpP Caseinolytic 99.0 1.3E-08 2.7E-13 80.1 13.6 135 26-187 9-162 (162)
107 PRK12553 ATP-dependent Clp pro 98.9 4.2E-08 9.2E-13 80.1 14.3 142 26-194 44-206 (207)
108 PRK00277 clpP ATP-dependent Cl 98.9 2.2E-08 4.7E-13 81.4 12.1 138 26-190 40-196 (200)
109 PRK12319 acetyl-CoA carboxylas 98.9 1.2E-06 2.6E-11 73.6 20.6 138 24-190 77-214 (256)
110 PRK14512 ATP-dependent Clp pro 98.8 1.8E-07 3.9E-12 75.8 15.0 143 26-196 32-194 (197)
111 cd07017 S14_ClpP_2 Caseinolyti 98.8 1E-07 2.3E-12 75.6 12.6 136 26-187 18-171 (171)
112 PRK11778 putative inner membra 98.8 8.7E-08 1.9E-12 83.0 12.9 165 7-201 89-296 (330)
113 PF00574 CLP_protease: Clp pro 98.8 1E-07 2.2E-12 76.3 11.3 143 12-190 18-181 (182)
114 CHL00198 accA acetyl-CoA carbo 98.7 2.8E-06 6.1E-11 73.1 19.6 138 25-191 134-271 (322)
115 COG0616 SppA Periplasmic serin 98.7 1.1E-07 2.4E-12 82.6 10.9 164 9-201 60-272 (317)
116 PRK05724 acetyl-CoA carboxylas 98.7 9.9E-06 2.1E-10 69.8 21.0 137 25-190 131-267 (319)
117 TIGR00513 accA acetyl-CoA carb 98.6 1.8E-05 3.9E-10 68.1 21.4 139 24-191 130-268 (316)
118 PLN03230 acetyl-coenzyme A car 98.6 2.8E-05 6E-10 68.8 22.0 137 25-190 201-337 (431)
119 CHL00028 clpP ATP-dependent Cl 98.5 4.6E-06 9.9E-11 67.7 14.7 138 26-190 39-196 (200)
120 PLN03229 acetyl-coenzyme A car 98.5 3E-05 6.6E-10 72.7 21.6 137 25-190 222-358 (762)
121 TIGR00493 clpP ATP-dependent C 98.5 3.7E-06 8E-11 67.9 13.8 138 26-189 35-190 (191)
122 PRK12551 ATP-dependent Clp pro 98.4 2.7E-05 5.9E-10 62.9 14.6 138 26-190 34-190 (196)
123 PF01343 Peptidase_S49: Peptid 98.3 2.9E-07 6.3E-12 71.7 2.3 101 97-201 3-150 (154)
124 PRK14514 ATP-dependent Clp pro 98.3 3E-05 6.4E-10 63.7 13.9 137 26-190 63-219 (221)
125 TIGR03133 malonate_beta malona 98.3 0.00037 7.9E-09 59.1 20.0 138 23-190 72-217 (274)
126 PRK05654 acetyl-CoA carboxylas 98.2 0.00035 7.6E-09 59.9 18.8 165 7-209 119-284 (292)
127 TIGR03134 malonate_gamma malon 98.2 0.00029 6.3E-09 58.6 17.6 154 8-192 31-191 (238)
128 PRK14513 ATP-dependent Clp pro 98.2 6.8E-05 1.5E-09 60.8 13.0 139 25-190 35-192 (201)
129 TIGR00515 accD acetyl-CoA carb 98.2 0.00031 6.8E-09 60.0 17.5 147 23-207 133-281 (285)
130 TIGR00705 SppA_67K signal pept 98.1 3.6E-05 7.8E-10 72.3 11.6 84 29-135 76-159 (584)
131 COG1030 NfeD Membrane-bound se 98.1 0.00017 3.6E-09 64.2 14.9 158 7-198 25-196 (436)
132 PRK07189 malonate decarboxylas 98.1 0.0011 2.4E-08 56.9 19.3 140 23-191 81-227 (301)
133 PF01972 SDH_sah: Serine dehyd 98.0 4.2E-05 9.1E-10 64.0 9.4 96 24-149 70-165 (285)
134 TIGR01117 mmdA methylmalonyl-C 98.0 0.001 2.2E-08 61.6 19.3 174 7-207 313-497 (512)
135 CHL00174 accD acetyl-CoA carbo 97.9 0.0023 5E-08 54.7 18.0 146 23-204 146-292 (296)
136 PRK10949 protease 4; Provision 97.8 0.00027 5.9E-09 66.6 12.7 83 30-135 96-178 (618)
137 PF01039 Carboxyl_trans: Carbo 97.8 0.0016 3.4E-08 60.2 16.6 142 23-205 70-220 (493)
138 COG0740 ClpP Protease subunit 97.8 0.0011 2.4E-08 53.4 13.5 96 91-190 76-192 (200)
139 PRK12552 ATP-dependent Clp pro 97.8 0.0013 2.7E-08 54.1 14.1 147 26-190 49-214 (222)
140 TIGR01117 mmdA methylmalonyl-C 97.7 0.0024 5.2E-08 59.2 16.0 144 23-207 95-245 (512)
141 PLN02820 3-methylcrotonyl-CoA 97.7 0.0036 7.7E-08 58.6 17.2 147 22-205 141-294 (569)
142 COG0825 AccA Acetyl-CoA carbox 97.3 0.0029 6.2E-08 53.4 9.8 94 86-191 174-267 (317)
143 COG0777 AccD Acetyl-CoA carbox 97.0 0.031 6.8E-07 46.9 13.4 161 10-209 124-285 (294)
144 PF01039 Carboxyl_trans: Carbo 96.8 0.028 6E-07 52.1 13.2 173 7-208 292-481 (493)
145 PLN02820 3-methylcrotonyl-CoA 96.8 0.11 2.4E-06 48.7 16.6 158 25-208 381-557 (569)
146 COG4799 Acetyl-CoA carboxylase 96.6 0.032 7E-07 51.3 11.3 143 22-205 103-252 (526)
147 KOG0840 ATP-dependent Clp prot 95.3 0.21 4.5E-06 41.7 9.6 134 26-190 101-257 (275)
148 COG4799 Acetyl-CoA carboxylase 92.8 3.2 6.9E-05 38.6 12.9 168 13-208 328-511 (526)
149 KOG0540 3-Methylcrotonyl-CoA c 91.9 3.8 8.2E-05 37.2 11.8 168 13-209 353-525 (536)
150 PF02601 Exonuc_VII_L: Exonucl 91.2 0.65 1.4E-05 40.4 6.5 80 27-130 53-135 (319)
151 TIGR00237 xseA exodeoxyribonuc 89.8 1.1 2.5E-05 40.8 6.9 81 26-130 167-247 (432)
152 PF06833 MdcE: Malonate decarb 89.8 10 0.00022 31.6 11.7 96 83-189 88-186 (234)
153 COG1570 XseA Exonuclease VII, 87.7 1.6 3.6E-05 39.5 6.3 77 28-130 175-253 (440)
154 PRK00286 xseA exodeoxyribonucl 86.4 2.2 4.7E-05 38.9 6.6 79 27-130 174-252 (438)
155 COG0074 SucD Succinyl-CoA synt 73.4 14 0.0003 31.6 6.5 53 34-112 188-240 (293)
156 smart00250 PLEC Plectin repeat 71.0 3.3 7.2E-05 23.8 1.7 18 169-186 18-35 (38)
157 PF00681 Plectin: Plectin repe 65.8 2.5 5.5E-05 25.4 0.5 21 168-188 17-37 (45)
158 PF01740 STAS: STAS domain; I 65.1 29 0.00063 24.8 6.2 48 1-56 1-56 (117)
159 PF00549 Ligase_CoA: CoA-ligas 64.2 15 0.00033 28.4 4.6 63 32-113 59-121 (153)
160 TIGR00377 ant_ant_sig anti-ant 61.4 39 0.00085 23.6 6.2 48 2-57 5-52 (108)
161 TIGR02886 spore_II_AA anti-sig 61.0 54 0.0012 22.9 7.3 48 2-57 1-48 (106)
162 PF13607 Succ_CoA_lig: Succiny 59.1 23 0.0005 26.9 4.8 51 33-110 41-91 (138)
163 PF06258 Mito_fiss_Elm1: Mitoc 52.9 1.6E+02 0.0034 25.7 9.9 108 22-130 121-237 (311)
164 PTZ00187 succinyl-CoA syntheta 44.3 86 0.0019 27.4 6.5 15 98-112 250-264 (317)
165 cd07043 STAS_anti-anti-sigma_f 43.7 97 0.0021 20.9 5.8 46 3-57 2-47 (99)
166 cd04241 AAK_FomA-like AAK_FomA 38.7 1.2E+02 0.0025 25.2 6.4 34 22-59 16-49 (252)
167 COG0252 AnsB L-asparaginase/ar 36.8 2.8E+02 0.0061 24.6 8.7 31 24-55 78-108 (351)
168 smart00870 Asparaginase Aspara 36.3 1.3E+02 0.0029 26.1 6.6 32 25-56 56-87 (323)
169 TIGR00520 asnASE_II L-asparagi 35.0 2.8E+02 0.0062 24.5 8.4 33 24-56 83-115 (349)
170 PLN02522 ATP citrate (pro-S)-l 33.4 1.2E+02 0.0027 29.0 6.2 14 99-112 249-262 (608)
171 PF11524 SeleniumBinding: Sele 32.0 28 0.0006 23.5 1.2 37 169-205 11-47 (81)
172 cd06844 STAS Sulphate Transpor 30.8 1.8E+02 0.0039 20.0 6.4 46 4-57 3-48 (100)
173 PRK06091 membrane protein FdrA 29.3 1.8E+02 0.004 27.5 6.5 22 91-112 270-291 (555)
174 KOG3179 Predicted glutamine sy 28.7 1.3E+02 0.0028 24.7 4.7 41 50-110 62-103 (245)
175 KOG3985 Methylthioadenosine ph 28.7 1.2E+02 0.0026 25.3 4.6 54 6-67 131-184 (283)
176 COG2840 Uncharacterized protei 28.6 1.6E+02 0.0034 23.6 5.2 38 24-64 102-140 (184)
177 PRK10584 putative ABC transpor 27.8 1.7E+02 0.0038 23.5 5.6 40 12-56 167-206 (228)
178 cd03255 ABC_MJ0796_Lo1CDE_FtsE 27.8 1.3E+02 0.0027 24.1 4.8 40 12-56 161-200 (218)
179 PF01738 DLH: Dienelactone hyd 27.5 1.3E+02 0.0028 24.0 4.8 41 84-124 77-119 (218)
180 cd03225 ABC_cobalt_CbiO_domain 27.4 1.2E+02 0.0027 24.0 4.7 38 12-55 155-192 (211)
181 cd03297 ABC_ModC_molybdenum_tr 27.2 1.7E+02 0.0038 23.3 5.5 39 12-55 152-190 (214)
182 PF05582 Peptidase_U57: YabG p 27.2 2.2E+02 0.0049 24.4 6.1 66 28-105 140-205 (287)
183 TIGR01277 thiQ thiamine ABC tr 26.9 1.9E+02 0.0041 23.1 5.6 39 12-55 149-187 (213)
184 cd03216 ABC_Carb_Monos_I This 26.9 2E+02 0.0044 21.9 5.6 38 12-55 103-140 (163)
185 smart00463 SMR Small MutS-rela 26.7 1.7E+02 0.0037 19.3 4.6 32 28-59 12-43 (80)
186 TIGR02211 LolD_lipo_ex lipopro 26.7 1.8E+02 0.004 23.2 5.6 40 12-56 162-201 (221)
187 PRK11096 ansB L-asparaginase I 26.7 4.5E+02 0.0098 23.3 8.3 31 24-56 80-110 (347)
188 PF01713 Smr: Smr domain; Int 26.3 1.2E+02 0.0027 20.2 3.8 36 28-64 9-44 (83)
189 cd03267 ABC_NatA_like Similar 26.2 2E+02 0.0043 23.5 5.7 39 12-55 174-212 (236)
190 PRK05368 homoserine O-succinyl 26.2 3.8E+02 0.0081 23.3 7.5 77 24-123 78-154 (302)
191 cd03300 ABC_PotA_N PotA is an 26.2 1.9E+02 0.0041 23.5 5.6 40 12-56 151-190 (232)
192 cd03265 ABC_DrrA DrrA is the A 26.0 1.4E+02 0.003 24.0 4.7 40 12-56 152-191 (220)
193 cd03298 ABC_ThiQ_thiamine_tran 26.0 1.9E+02 0.0041 22.9 5.5 39 12-55 149-187 (211)
194 COG2101 SPT15 TATA-box binding 25.5 1.8E+02 0.0039 23.1 4.9 22 46-67 144-165 (185)
195 TIGR02855 spore_yabG sporulati 25.1 2.6E+02 0.0057 23.9 6.1 66 28-105 139-204 (283)
196 TIGR01184 ntrCD nitrate transp 25.0 2.1E+02 0.0046 23.2 5.7 39 12-55 135-173 (230)
197 PRK04183 glutamyl-tRNA(Gln) am 25.0 2.8E+02 0.0061 25.3 6.8 33 24-57 131-163 (419)
198 cd03259 ABC_Carb_Solutes_like 25.0 2E+02 0.0044 22.8 5.5 39 12-55 151-189 (213)
199 COG0412 Dienelactone hydrolase 24.9 1.3E+02 0.0028 24.9 4.3 44 84-127 91-137 (236)
200 cd07393 MPP_DR1119 Deinococcus 24.8 3.8E+02 0.0081 21.8 7.1 32 22-56 16-50 (232)
201 PRK13540 cytochrome c biogenes 24.6 2.8E+02 0.0061 21.8 6.3 49 12-67 148-196 (200)
202 cd03257 ABC_NikE_OppD_transpor 24.6 2.1E+02 0.0046 22.9 5.6 39 12-55 166-204 (228)
203 cd03293 ABC_NrtD_SsuB_transpor 24.6 2.2E+02 0.0047 22.8 5.6 39 12-55 152-190 (220)
204 PF00195 Chal_sti_synt_N: Chal 24.4 1.5E+02 0.0032 24.6 4.5 73 33-130 107-181 (226)
205 PRK11831 putative ABC transpor 24.1 2.1E+02 0.0045 23.9 5.6 40 12-56 164-203 (269)
206 COG0528 PyrH Uridylate kinase 24.0 1.5E+02 0.0032 24.8 4.3 37 22-60 21-57 (238)
207 cd03235 ABC_Metallic_Cations A 23.8 2.2E+02 0.0049 22.6 5.5 38 12-55 153-190 (213)
208 TIGR02717 AcCoA-syn-alpha acet 23.8 2.4E+02 0.0051 25.9 6.2 23 89-112 220-242 (447)
209 cd03301 ABC_MalK_N The N-termi 23.7 2.3E+02 0.0049 22.5 5.5 39 12-55 151-189 (213)
210 cd03261 ABC_Org_Solvent_Resist 23.7 2.1E+02 0.0045 23.2 5.4 39 12-55 157-195 (235)
211 cd03214 ABC_Iron-Siderophores_ 23.6 2.4E+02 0.0052 21.8 5.5 39 12-55 118-156 (180)
212 PRK10247 putative ABC transpor 23.2 2.3E+02 0.0049 22.9 5.5 40 12-56 158-197 (225)
213 PRK11629 lolD lipoprotein tran 23.1 2.4E+02 0.0052 22.8 5.7 39 12-55 166-204 (233)
214 PRK15112 antimicrobial peptide 23.1 2.1E+02 0.0046 23.8 5.5 40 12-56 170-209 (267)
215 TIGR00960 3a0501s02 Type II (G 23.1 1.7E+02 0.0038 23.3 4.8 39 12-56 159-197 (216)
216 PF03802 CitX: Apo-citrate lya 22.8 2.4E+02 0.0053 22.1 5.3 63 7-70 27-95 (170)
217 KOG0062 ATPase component of AB 22.7 1.5E+02 0.0032 28.0 4.5 36 13-57 504-539 (582)
218 PF03464 eRF1_2: eRF1 domain 2 22.6 1.8E+02 0.0038 21.6 4.4 45 10-57 25-83 (133)
219 PRK15093 antimicrobial peptide 22.6 2.2E+02 0.0048 24.7 5.6 40 12-56 179-218 (330)
220 PRK09984 phosphonate/organopho 22.5 2.2E+02 0.0048 23.5 5.4 40 12-56 173-212 (262)
221 cd03229 ABC_Class3 This class 22.1 2.7E+02 0.0059 21.4 5.6 39 12-55 121-159 (178)
222 TIGR03124 ctirate_citX holo-AC 21.9 2.4E+02 0.0052 22.1 5.1 63 8-71 26-94 (165)
223 TIGR03410 urea_trans_UrtE urea 21.9 2.6E+02 0.0057 22.5 5.7 40 12-56 152-191 (230)
224 cd03256 ABC_PhnC_transporter A 21.8 2.4E+02 0.0052 22.8 5.4 40 12-56 165-204 (241)
225 cd03258 ABC_MetN_methionine_tr 21.8 2.5E+02 0.0054 22.6 5.5 39 12-55 161-199 (233)
226 cd03295 ABC_OpuCA_Osmoprotecti 21.7 2.4E+02 0.0051 23.0 5.4 40 12-56 156-195 (242)
227 PRK14558 pyrH uridylate kinase 21.7 3.8E+02 0.0082 21.9 6.6 34 24-59 18-51 (231)
228 PRK10908 cell division protein 21.7 2.7E+02 0.0058 22.3 5.6 38 12-55 158-195 (222)
229 PRK11247 ssuB aliphatic sulfon 21.7 2.6E+02 0.0055 23.3 5.6 39 12-55 154-192 (257)
230 cd03296 ABC_CysA_sulfate_impor 21.6 2.5E+02 0.0055 22.8 5.5 40 12-56 157-196 (239)
231 PF12268 DUF3612: Protein of u 21.5 88 0.0019 24.1 2.4 26 46-72 79-104 (178)
232 PRK14556 pyrH uridylate kinase 21.5 1.8E+02 0.0038 24.5 4.5 38 22-61 31-68 (249)
233 cd03246 ABCC_Protease_Secretio 21.4 2.8E+02 0.0062 21.2 5.5 38 12-55 117-154 (173)
234 TIGR02323 CP_lyasePhnK phospho 21.4 1.8E+02 0.0039 23.9 4.6 40 12-56 169-208 (253)
235 PRK11248 tauB taurine transpor 21.3 2.6E+02 0.0056 23.2 5.6 39 12-55 149-187 (255)
236 TIGR02315 ABC_phnC phosphonate 21.3 2.5E+02 0.0055 22.8 5.5 40 12-56 166-205 (243)
237 PRK13646 cbiO cobalt transport 21.2 2.4E+02 0.0053 23.8 5.5 39 12-55 166-204 (286)
238 COG1618 Predicted nucleotide k 21.2 1.2E+02 0.0026 24.0 3.2 26 86-111 116-141 (179)
239 cd03230 ABC_DR_subfamily_A Thi 21.2 2.8E+02 0.006 21.3 5.4 38 12-55 116-153 (173)
240 PRK10575 iron-hydroxamate tran 21.0 2.6E+02 0.0056 23.3 5.5 40 12-56 168-207 (265)
241 COG2845 Uncharacterized protei 21.0 3.8E+02 0.0083 23.6 6.4 58 40-104 171-230 (354)
242 TIGR03864 PQQ_ABC_ATP ABC tran 20.9 2.7E+02 0.006 22.5 5.6 41 12-57 153-193 (236)
243 PRK11701 phnK phosphonate C-P 20.8 1.8E+02 0.004 24.0 4.6 40 12-56 172-211 (258)
244 TIGR03608 L_ocin_972_ABC putat 20.5 3E+02 0.0064 21.6 5.6 39 12-56 155-193 (206)
245 PRK13634 cbiO cobalt transport 20.5 2.6E+02 0.0056 23.7 5.5 39 12-55 166-204 (290)
246 TIGR03005 ectoine_ehuA ectoine 20.3 2.7E+02 0.0059 22.8 5.5 40 12-56 167-206 (252)
247 PRK10253 iron-enterobactin tra 20.3 2.7E+02 0.0058 23.1 5.5 40 12-56 164-203 (265)
248 PF06935 DUF1284: Protein of u 20.2 2.4E+02 0.0051 20.1 4.4 30 26-56 2-31 (103)
249 PF01087 GalP_UDP_transf: Gala 20.2 2.1E+02 0.0045 22.6 4.5 53 8-65 108-168 (183)
250 PRK11300 livG leucine/isoleuci 20.2 2.1E+02 0.0045 23.5 4.8 40 12-56 174-213 (255)
No 1
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=3.4e-50 Score=335.42 Aligned_cols=232 Identities=66% Similarity=1.073 Sum_probs=203.7
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
|+.++++++|++|+|||| +.|++|.+|+.+|.+++++++.|++++.+||++|.|+.||+|.|++++.... ....
T Consensus 1 ~~~~~~~~~v~~i~Lnrp---~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~---~~~~ 74 (239)
T PLN02267 1 MCTLEKRGNLFILTLTGD---GEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAG---SAPS 74 (239)
T ss_pred CceeEecCCEEEEEeCCC---CcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccc---cCHH
Confidence 789999999999999999 4599999999999999999999998764888899999999999999865311 1122
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCH
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~ 160 (243)
....+...+++++.++.++||||||+|||+|+|||++|+++||+||+++++++|++||+++|+++|+++..++++++| .
T Consensus 75 ~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG-~ 153 (239)
T PLN02267 75 RLHLMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIG-S 153 (239)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcC-h
Confidence 223345567788999999999999999999999999999999999998654799999999999558888889999999 7
Q ss_pred HHH-HHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhccchhhhhc
Q 026127 161 TAR-RDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLGLDMRAVVS 239 (243)
Q Consensus 161 ~~a-~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~~~~~~~~~ 239 (243)
.++ ++++++|++++|+||+++||||+|+++.+++.+++.++|++++..++.+.++..+|+.++++..+.+-.+.|.-++
T Consensus 154 ~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 233 (239)
T PLN02267 154 PAARRDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKWNGEVYASIRKSLLPEVCGKLGLDEEVEES 233 (239)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHhcchhhhhhh
Confidence 777 6899999999999999999999999865789999999999999998789999999999999999988877776655
No 2
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.8e-50 Score=342.26 Aligned_cols=212 Identities=22% Similarity=0.289 Sum_probs=192.9
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
++.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++|| +||+||.|+.||+|.|++++..... ..
T Consensus 12 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~----~~ 84 (266)
T PRK08139 12 LLLREDRDGVATLTLNRPQ--AFNALSEAMLAALQAALDAIAADPSVR-VVVLAAAGKAFCAGHDLKEMRAARG----LA 84 (266)
T ss_pred ceEEEeeCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhcCCCee-EEEEecCCCcceeccCHHHHhcccc----hh
Confidence 3678889999999999997 789999999999999999999999999 9999999999999999998754211 22
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCH
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~ 160 (243)
....+.+.+.+++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++++.++++++| .
T Consensus 85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~~~~~l~r~vG-~ 161 (266)
T PRK08139 85 YFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADT-ARFAVPGVNIGL-FCSTPMVALSRNVP-R 161 (266)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCC-CEEeCcccCcCC-CCCccHHHHHHHhC-H
Confidence 33344556678899999999999999999999999999999999999998 899999999999 78887788999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
.++++++++|++++|+||+++||||+|+|+ +++.+.+.+++++++..| +.++..+|+.++..
T Consensus 162 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 223 (266)
T PRK08139 162 KQAMEMLLTGEFIDAATAREWGLVNRVVPA-DALDAAVARLAAVIAAKS--PAAVRIGKEAFYRQ 223 (266)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCccEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 999999999999999999999999999997 899999999999999998 89999999999764
No 3
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=5.3e-50 Score=340.85 Aligned_cols=216 Identities=18% Similarity=0.216 Sum_probs=191.3
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++|| +|||+|.|++||+|.|++++..... ......
T Consensus 10 i~~~~~~~va~itlnrp~--~~Nal~~~m~~el~~al~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~ 85 (275)
T PRK09120 10 VKVEVEDGIAWVTLNRPE--KRNAMSPTLNREMIDVLDALEFDDDAG-VLVLTGAGDAWSAGMDLKEYFRETD-AQPEIL 85 (275)
T ss_pred EEEEEECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHHhCCCce-EEEEEcCCCceecCcCHHHHhhccc-cchhHH
Confidence 678889999999999997 899999999999999999999999999 9999999999999999998743211 111111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
.......+++++.+|.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG-~ 162 (275)
T PRK09120 86 QERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADE-AQFGLSEINWGI-PPGGGVSKAMADTVG-H 162 (275)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCC-cEecCCccccCC-CCCcchHHHHHHHcC-H
Confidence 2223344567888999999999999999999999999999999999988 899999999999 68876 568999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
.++++++++|+.++|+||+++|||++|+|+ +++.+++.+++++|+..| +.+++.+|+.++....
T Consensus 163 ~~a~~llltg~~~~A~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~ 226 (275)
T PRK09120 163 RDALYYIMTGETFTGRKAAEMGLVNESVPL-AQLRARTRELAAKLLEKN--PVVLRAAKDGFKRVRE 226 (275)
T ss_pred HHHHHHHhcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999997 899999999999999998 9999999999976533
No 4
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.8e-50 Score=338.98 Aligned_cols=215 Identities=24% Similarity=0.336 Sum_probs=191.5
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|| +||+||.| ++||+|.|++++..... .....
T Consensus 5 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~ 80 (260)
T PRK05980 5 VLIEIRDGIALLTLNRPE--KLNALNYALIDRLLARLDAIEVDESVR-AVILTGAGDRAFSAGADIHEFSASVA-AGADV 80 (260)
T ss_pred EEEEEECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHHhhCCCcE-EEEEEeCCCCceEcCcCHHHHhhhcc-ccchh
Confidence 567889999999999997 899999999999999999999999999 99999998 79999999998754211 11122
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+.+.+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 157 (260)
T PRK05980 81 ALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASER-ALFAKPEIRLGM-PPTFGGTQRLPRLAG- 157 (260)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCC-CEecCcccccCC-CCCchHhhHHHhhcC-
Confidence 23445566677888999999999999999999999999999999999988 899999999999 67776 569999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
...+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 158 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~~~~~~ 221 (260)
T PRK05980 158 RKRALELLLTGDAFSAERALEIGLVNAVVPH-EELLPAARALARRIIRHS--PVAVAAILTAVTRGL 221 (260)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCCcccCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999998 789999999999999998 889999999887653
No 5
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=7.9e-50 Score=336.62 Aligned_cols=209 Identities=21% Similarity=0.332 Sum_probs=188.9
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
++.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|++|| +||+||.|++||+|.|++++... +. .
T Consensus 3 ~i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~~~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~---~~-~- 74 (255)
T PRK09674 3 ELLVSRQQRVLLLTLNRPE--ARNALNNALLTQLVNELEAAATDTSIG-VCVITGNARFFAAGADLNEMAEK---DL-A- 74 (255)
T ss_pred eEEEEeECCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCCCcE-EEEEECCCCceecccChHhHhcc---ch-h-
Confidence 3678889999999999997 789999999999999999999999999 99999999999999999987541 10 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
..+.+...+++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 75 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~ig- 149 (255)
T PRK09674 75 --ATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGEN-ARFGLPEITLGI-MPGAGGTQRLIRSVG- 149 (255)
T ss_pred --hhHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCC-CEEeCchhhcCC-CCCccHHHHHHHHhC-
Confidence 122334566888999999999999999999999999999999999998 899999999999 68876 578999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
+.++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 150 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 212 (255)
T PRK09674 150 KSLASQMVLTGESITAQQAQQAGLVSEVFPP-ELTLERALQLASKIARHS--PLALRAAKQALRQS 212 (255)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCcEecCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 889999999999999998 99999999998754
No 6
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.9e-50 Score=339.09 Aligned_cols=217 Identities=22% Similarity=0.306 Sum_probs=192.5
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCC---C---
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGS---R--- 75 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~---~--- 75 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++|| +||++|.|++||+|.|++++..... .
T Consensus 8 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 84 (272)
T PRK06142 8 FTVELADHVAQVTLNRPG--KGNAMNPAFWSELPEIFRWLDADPEVR-AVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGL 84 (272)
T ss_pred EEEEecCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCceecccCHHHHhhhccccccccc
Confidence 567889999999999997 899999999999999999999999999 9999999999999999998754110 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHH
Q 026127 76 TGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFR 154 (243)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~ 154 (243)
.........+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~ 162 (272)
T PRK06142 85 ARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASAD-AKFSVREVDLGM-VADVGSLQRLP 162 (272)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCC-CeecchhhhhCC-CCCchHHHHHH
Confidence 0112233344556678889999999999999999999999999999999999998 899999999999 68776 56999
Q ss_pred HHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 155 AKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 155 ~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
+++| ..++++++++|++++|+||+++||||+|+++.+++.+++.+++++++..| +.++..+|+.++...
T Consensus 163 ~~~G-~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~--~~a~~~~K~~l~~~~ 231 (272)
T PRK06142 163 RIIG-DGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKS--PLAVRGTKEVLDYMR 231 (272)
T ss_pred HHhC-HHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhh
Confidence 9999 99999999999999999999999999999865789999999999999998 999999999998653
No 7
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.3e-50 Score=336.65 Aligned_cols=209 Identities=21% Similarity=0.274 Sum_probs=188.1
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||++|.|+.||+|.|++++... +. .+
T Consensus 6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~---~~-~~- 77 (257)
T PRK05862 6 ILVETRGRVGLITLNRPK--ALNALNDALMDELGAALAAFDADEGIG-AIVITGSEKAFAAGADIKEMADL---SF-MD- 77 (257)
T ss_pred EEEEeeCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCee-EEEEECCCCceECCcChHhHhcc---ch-hH-
Confidence 567889999999999997 789999999999999999999999999 99999999999999999987542 11 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
.+...+..++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.+|++++| .
T Consensus 78 --~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~ 152 (257)
T PRK05862 78 --VYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADT-AKFGQPEIKLGV-LPGMGGSQRLTRAVG-K 152 (257)
T ss_pred --HHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCC-CEEeCchhccCc-CCCccHHHHHHHHhC-H
Confidence 12233445778899999999999999999999999999999999988 899999999999 78887 569999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
.++++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..+ +.++..+|+.++...
T Consensus 153 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~ 215 (257)
T PRK05862 153 AKAMDLCLTGRMMDAAEAERAGLVSRVVPA-DKLLDEALAAATTIASFS--LPAVMMAKEAVNRAY 215 (257)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCCCEeeCH-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 899999999999999998 899999999997653
No 8
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-49 Score=335.90 Aligned_cols=210 Identities=24% Similarity=0.345 Sum_probs=190.1
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
++.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||++|.|++||+|+|++++..... ..
T Consensus 5 ~v~~~~~~~va~Itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~~----~~ 77 (258)
T PRK06190 5 ILLVETHDRVRTLTLNRPE--ARNALSAALRRALFAALAEADADDDVD-VVVLTGADPAFCAGLDLKELGGDGS----AY 77 (258)
T ss_pred eEEEEeeCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCCccCCcCHHHHhcccc----hh
Confidence 4678899999999999997 899999999999999999999999999 9999999999999999998764211 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
.. ...+++++.+|.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 78 ~~---~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG- 151 (258)
T PRK06190 78 GA---QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASER-ARFADTHARVGI-LPGWGLSVRLPQKVG- 151 (258)
T ss_pred hH---HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCC-CEEECcccccCc-CCCccHHHHHHHHhC-
Confidence 11 234567888999999999999999999999999999999999988 899999999999 78876 568999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
...+++++++|++++|+||+++||||+++|+ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 152 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 215 (258)
T PRK06190 152 IGRARRMSLTGDFLDAADALRAGLVTEVVPH-DELLPRARRLAASIAGNN--PAAVRALKASYDDGA 215 (258)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCCeEecCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999997 889999999999999998 999999999998653
No 9
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-49 Score=335.51 Aligned_cols=210 Identities=25% Similarity=0.337 Sum_probs=189.7
Q ss_pred ceee-EeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchH
Q 026127 2 CTLE-KHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 2 ~~~~-~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~ 79 (243)
+.++ .+++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.| ++||+|.|++++.... .
T Consensus 8 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~~-----~ 79 (256)
T PRK06143 8 AGVTRDDRGVATLTIRNAG--SLNILGTPVILALTQALRWLAADPDVR-VLVLRGAGEKAFIGGADIKEMATLD-----Q 79 (256)
T ss_pred ceeeecCCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhcCCCcE-EEEEEeCCCCcccCCcCHHHHhhcC-----h
Confidence 3455 46899999999997 899999999999999999999999999 99999998 7999999999875421 2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCC
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGS 159 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~ 159 (243)
.....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|.++++++++++|
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~-p~~~~~~~l~~~iG- 156 (256)
T PRK06143 80 ASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHD-AQFGMPEVRVGI-PSVIHAALLPRLIG- 156 (256)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCC-CEEeCCccccCC-CCccHHHHHHHhcC-
Confidence 223345566788899999999999999999999999999999999999988 899999999998 66666789999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
..++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 157 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 219 (256)
T PRK06143 157 WARTRWLLLTGETIDAAQALAWGLVDRVVPL-AELDAAVERLAASLAGCG--PQALRQQKRLLREW 219 (256)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCcCeecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHH
Confidence 8999999999999999999999999999998 899999999999999998 89999999998765
No 10
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-49 Score=336.64 Aligned_cols=213 Identities=23% Similarity=0.373 Sum_probs=190.3
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++||||+|+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|++||+|+|++++..... .. ...
T Consensus 6 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~-~~~ 80 (262)
T PRK05995 6 LEIEQRGQVATVTLNRPD--VRNAFNETVIAELTAAFRALDADDSVR-AVVLAGAGKAFCAGADLNWMKKMAG-YS-DDE 80 (262)
T ss_pred EEEEeeCCEEEEEEcCcc--cccCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCccccCcCHHHHhhhcc-cC-chh
Confidence 567889999999999997 889999999999999999999999999 9999999999999999998754211 01 111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
.......+++++.+|.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++|+.++++++| ..
T Consensus 81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~l~~~vg-~~ 157 (262)
T PRK05995 81 NRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADH-AVFCLSEVRLGL-IPATISPYVIRAMG-ER 157 (262)
T ss_pred hhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCC-CEEeCccccccc-CccchHHHHHHHhC-HH
Confidence 1122345677889999999999999999999999999999999999988 899999999999 78888778999999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
.+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 218 (262)
T PRK05995 158 AARRYFLTAERFDAAEALRLGLVHEVVPA-EALDAKVDELLAALVANS--PQAVRAGKRLVRDV 218 (262)
T ss_pred HHHHHHHcCCccCHHHHHHcCCCCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 99999999999999999999999999997 889999999999999998 89999999999764
No 11
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-49 Score=335.35 Aligned_cols=212 Identities=23% Similarity=0.297 Sum_probs=185.2
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||||+ +.|++|.+|+.+|.++++++++|++|| +||++|.|+.||+|.|++++..... ......
T Consensus 1 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-vvvl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~ 76 (255)
T PRK06563 1 VSRERRGHVLLIGLDRPA--KRNAFDSAMLDDLALALGEYEADDELR-VAVLFAHGEHFTAGLDLADVAPKLA-AGGFPF 76 (255)
T ss_pred CeEEEECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHHhhCCCcE-EEEEECCCCCCcCCcCHHHHhhccc-cchhhh
Confidence 567889999999999997 899999999999999999999999999 9999999999999999998754211 110111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
.. .....+...+.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| .
T Consensus 77 ~~---~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~ 150 (255)
T PRK06563 77 PE---GGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADN-TRFAQLEVQRGI-LPFGGATLRFPQAAG-W 150 (255)
T ss_pred hh---hhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCC-CEEeChhhhcCC-CCCccHHHHHHHHhh-H
Confidence 11 11222334688999999999999999999999999999999998 899999999999 78776 568999999 8
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
..+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 151 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~ 213 (255)
T PRK06563 151 GNAMRYLLTGDEFDAQEALRLGLVQEVVPP-GEQLERAIELAERIARAA--PLGVQATLASARAAV 213 (255)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCCcEeeCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998 889999999999999998 899999999987643
No 12
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=2e-49 Score=334.32 Aligned_cols=210 Identities=22% Similarity=0.320 Sum_probs=188.5
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|++|| +||++|.| ++||+|.|++++... . .. .
T Consensus 4 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVl~g~g~~~F~aG~Dl~~~~~~-~-~~-~- 76 (256)
T TIGR03210 4 ILYEKRNGIAWIMINRPA--KMNAFRGQTCDELIHALKDAGYDRQIG-VIVLAGAGDKAFCTGGDQSTHDGG-Y-DG-R- 76 (256)
T ss_pred eEEEeeCCEEEEEEcCCc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEecCCCCceecCcChHHHhcc-c-cc-h-
Confidence 577889999999999997 899999999999999999999999999 99999998 799999999987431 1 11 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCH
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~ 160 (243)
..+...+..++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+.+|++++.++++++| .
T Consensus 77 --~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~G~~~~~~~~~~l~~~vG-~ 152 (256)
T TIGR03210 77 --GTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEK-AQFGQVGPKVGSVDPGYGTALLARVVG-E 152 (256)
T ss_pred --hHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCC-CEEecccccccccCCccHHHHHHHHhC-H
Confidence 112234567888999999999999999999999999999999999988 899999999999446667789999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
..+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 153 ~~A~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~~--~~a~~~~K~~l~~~ 214 (256)
T TIGR03210 153 KKAREIWYLCRRYTAQEALAMGLVNAVVPH-DQLDAEVQKWCDEIVEKS--PTAIAIAKRSFNMD 214 (256)
T ss_pred HHHHHHHHhCCCcCHHHHHHcCCceeeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 999999999999999999999999999997 899999999999999998 89999999999764
No 13
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-49 Score=333.77 Aligned_cols=209 Identities=17% Similarity=0.235 Sum_probs=187.8
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
++.++++++|++|+||||+ +.|++|.+|+.+|.+++++++ +++| +||+||.|++||+|.|++++.... ..
T Consensus 3 ~v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~--~~vr-~vvltg~g~~F~aG~Dl~~~~~~~-----~~ 72 (255)
T PRK08150 3 LVSYELDGGVATIGLNRPA--KRNALNDGLIAALRAAFARLP--EGVR-AVVLHGEGDHFCAGLDLSELRERD-----AG 72 (255)
T ss_pred eEEEEeeCCEEEEEEcCCc--cccCCCHHHHHHHHHHHHHhh--cCCe-EEEEECCCCceecCcCHHHHhhcc-----ch
Confidence 3678889999999999997 899999999999999999997 7899 999999999999999999886421 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
........+++++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 73 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG- 149 (255)
T PRK08150 73 EGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADES-TYFALPEGQRGI-FVGGGGSVRVPRLIG- 149 (255)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCC-CEEeccccccCC-CCCccHHHHHHHHhC-
Confidence 11233455677888999999999999999999999999999999999988 899999999999 67776 568999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
...+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 150 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 212 (255)
T PRK08150 150 VARMTDMMLTGRVYDAQEGERLGLAQYLVPA-GEALDKAMELARRIAQNA--PLTNFAVLNALPRI 212 (255)
T ss_pred HHHHHHHHHcCCcCCHHHHHHcCCccEeeCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 8999999999999999999999999999998 889999999999999998 88999999999764
No 14
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.6e-49 Score=333.60 Aligned_cols=217 Identities=24% Similarity=0.346 Sum_probs=193.0
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++++ +||++|.|++||+|+|++++..... ......
T Consensus 4 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~ 79 (255)
T PRK07260 4 IIYEVEDDLATLTLNRPE--VSNGFNIPMCQEILEALRLAEEDPSVR-FLLINANGKVFSVGGDLVEMKRAVD-EDDVQS 79 (255)
T ss_pred eEEEEECCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcccccCHHHHHhhcc-ccchhh
Confidence 567889999999999997 789999999999999999999999999 9999999999999999998764211 111222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+.+.+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| .
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg-~ 156 (255)
T PRK07260 80 LVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTK-TKFIQAFVGVGL-APDAGGLFLLTRAIG-L 156 (255)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCC-CEEechHhhcCC-CCCCchhhhhHHhhC-H
Confidence 2334556678889999999999999999999999999999999999998 899999999999 67776 568999999 8
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCG 228 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~ 228 (243)
..+++++++|++++|+||+++||||+++|+ +++.+.+.+++++++..+ +.++..+|+.++.....
T Consensus 157 ~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~~~ 221 (255)
T PRK07260 157 NRATHLAMTGEALTAEKALEYGFVYRVAES-EKLEKTCEQLLKKLRRGS--SNSYAAIKSLVWESFFK 221 (255)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCcceecCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999997 889999999999999998 99999999999876433
No 15
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.7e-49 Score=336.20 Aligned_cols=215 Identities=22% Similarity=0.318 Sum_probs=189.4
Q ss_pred ceeeEe-CcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKH-GDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~-~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++ ++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|| +||+||.|++||+|.|++++..... .. ..
T Consensus 7 l~~~~~~~~v~~itlnrp~--~~Nal~~~~~~el~~al~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~-~~ 81 (265)
T PRK05674 7 IELIRDPRGFATLWLSRAD--KNNAFNAQMIRELILALDQVQSDASLR-FLLLRGRGRHFSAGADLAWMQQSAD-LD-YN 81 (265)
T ss_pred EEEEEcCCCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCCcccCcCHHHHhhccc-cc-ch
Confidence 466774 789999999997 899999999999999999999999999 9999999999999999998753211 00 10
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCH
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~ 160 (243)
........+.+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++++.++++++| .
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gi-~p~~~~~~l~~~vG-~ 158 (265)
T PRK05674 82 TNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADD-AQFCLSEVRIGL-APAVISPFVVKAIG-E 158 (265)
T ss_pred hhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCC-CEEeCcccccCC-CcchhHHHHHHHhC-H
Confidence 11112234567888999999999999999999999999999999999988 899999999999 78888778999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
.++++++++|+.|+|+||+++|||++|+|+ +++.+++.+++++++..| +.++..+|+.++....
T Consensus 159 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~ 222 (265)
T PRK05674 159 RAARRYALTAERFDGRRARELGLLAESYPA-AELEAQVEAWIANLLLNS--PQALRASKDLLREVGD 222 (265)
T ss_pred HHHHHHHHhCcccCHHHHHHCCCcceecCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999997 899999999999999998 9999999999876543
No 16
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-49 Score=333.63 Aligned_cols=213 Identities=22% Similarity=0.253 Sum_probs=191.1
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+||||+ +.|++|.+|+++|.+++++++.|+++| +||++|.| ++||+|.|++++..... ..
T Consensus 10 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVltg~g~~~F~aG~Dl~~~~~~~~----~~ 82 (262)
T PRK06144 10 LLLEVRGGIARITFNRPA--ARNAMTWAMYEGLAEICEAIAADPSIR-AVVLRGAGDKAFVAGTDIAQFRAFST----AE 82 (262)
T ss_pred eEEEeeCCEEEEEecCCc--ccCCCCHHHHHHHHHHHHHHhcCCCce-EEEEecCCCCceecCcCHHHHhhccc----hh
Confidence 578889999999999997 889999999999999999999999999 99999998 79999999998764211 12
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccc-cCcCCChhh-HHHHHHHhC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVD-IGLTLPDYF-AALFRAKVG 158 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~-~Gl~~p~~g-~~~l~~~~g 158 (243)
....+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|+ +|++| ..++++++|
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~~G~-~p~~g~~~~l~~~vG 160 (262)
T PRK06144 83 DAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPS-ARFGFPIARTLGN-CLSMSNLARLVALLG 160 (262)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCC-CEeechhHHhccC-CCCccHHHHHHHHhC
Confidence 22234455677888999999999999999999999999999999999998 899999997 999 67766 579999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
...+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++....
T Consensus 161 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~i~~~~--~~a~~~~K~~l~~~~~ 225 (262)
T PRK06144 161 -AARVKDMLFTARLLEAEEALAAGLVNEVVED-AALDARADALAELLAAHA--PLTLRATKEALRRLRR 225 (262)
T ss_pred -HHHHHHHHHcCCCcCHHHHHHcCCcCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhh
Confidence 8999999999999999999999999999998 899999999999999998 9999999999976543
No 17
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=4.6e-49 Score=332.25 Aligned_cols=213 Identities=24% Similarity=0.308 Sum_probs=187.8
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++||||||+ +.|++|.+|+.+|.++++++++|+ +| +||+||.|++||+|.|++++..... .....
T Consensus 1 ~~~e~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~-v~-~vVltg~g~~F~aG~Dl~~~~~~~~--~~~~~ 74 (256)
T TIGR02280 1 ILSALEAGVARLTLNRPD--KLNSFTAEMHLELREALERVERDD-AR-ALMLTGAGRGFCAGQDLSERNPTPG--GAPDL 74 (256)
T ss_pred CeEEEECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCC-cE-EEEEECCCCCcccCcCHHHHhhccc--cchhH
Confidence 467889999999999997 899999999999999999999998 99 9999999999999999998754211 00111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+..++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| .+++++++| .
T Consensus 75 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~-a~f~~pe~~lG~-~p~~g~~~~l~~~vG-~ 151 (256)
T TIGR02280 75 GRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAES-ARFIQAFAKIGL-IPDSGGTWSLPRLVG-R 151 (256)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCC-CEEeChhhhcCC-CCCccHHHHHHHHhC-H
Confidence 1222233456788899999999999999999999999999999999998 899999999999 67766 568999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
..+++|+++|++++|+||+++|||++|+|+ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 152 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~~~~~~K~~l~~~~ 214 (256)
T TIGR02280 152 ARAMGLAMLGEKLDARTAASWGLIWQVVDD-AALMDEAQALAVHLAAQP--TRGLALTKRAIQAAA 214 (256)
T ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceeeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence 999999999999999999999999999998 799999999999999998 899999999997543
No 18
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.4e-49 Score=335.75 Aligned_cols=216 Identities=20% Similarity=0.209 Sum_probs=191.2
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+|+.+|.+++++++.|+++| +|||||.|++||+|.|++++..... ..+...
T Consensus 19 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~eL~~~l~~~~~d~~vr-~vVltg~g~~FsaG~Dl~~~~~~~~-~~~~~~ 94 (277)
T PRK08258 19 FLWEVDDGVATITLNRPE--RKNPLTFESYAELRDLFRELVYADDVK-AVVLTGAGGNFCSGGDVHEIIGPLT-KMDMPE 94 (277)
T ss_pred eEEEEECCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEeCCCCCcccccCHHHHhcccc-ccChhH
Confidence 467889999999999997 899999999999999999999999999 9999999999999999998743211 111222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+.+.+.+++.+|.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+.+|++| .+++++++| .
T Consensus 95 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl~p~~~g~~~~l~~~vG-~ 172 (277)
T PRK08258 95 LLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPS-AKTAFLFTRVGLAGADMGACALLPRIIG-Q 172 (277)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCC-CEEeccccccCcCCCCchHHHHHHHHhC-H
Confidence 3345556678899999999999999999999999999999999999988 899999999999324655 579999999 8
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
..+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.+++.+|+.++...
T Consensus 173 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 235 (277)
T PRK08258 173 GRASELLYTGRSMSAEEGERWGFFNRLVEP-EELLAEAQALARRLAAGP--TFAHGMTKTMLHQEW 235 (277)
T ss_pred HHHHHHHHcCCCCCHHHHHHcCCCcEecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhc
Confidence 999999999999999999999999999997 889999999999999998 999999999997653
No 19
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-49 Score=334.54 Aligned_cols=217 Identities=24% Similarity=0.307 Sum_probs=190.8
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCH-HHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCC-c-c
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGP-PAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSR-T-G 77 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~-~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~-~-~ 77 (243)
++.++++++|++||||||+ +.|++|. +|+.+|.+++++++.|+++| +|||+|.|++||+|.|++++...... . .
T Consensus 4 ~v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~~l~~~l~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (266)
T PRK09245 4 FLLVERDGHIVTLTMNRPE--TRNALSDNDAVDALVAACAAINADRSVR-AVILTGAGTAFSSGGNVKDMRARVGAFGGS 80 (266)
T ss_pred ceEEEEECCEEEEEECCcc--cccCCChHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcccCcCHHHHhhcccccccc
Confidence 3678899999999999997 8899995 99999999999999999999 99999999999999999987542110 0 0
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHH
Q 026127 78 ARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAK 156 (243)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~ 156 (243)
.......+...+.+++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~ 158 (266)
T PRK09245 81 PADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASET-ARFAESFVKLGL-IPGDGGAWLLPRI 158 (266)
T ss_pred chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCC-CEEcccccccCc-CCCcchhhhHHHH
Confidence 01112233445567888999999999999999999999999999999999988 899999999999 68876 5689999
Q ss_pred hCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
+| ...+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 159 vG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~ 224 (266)
T PRK09245 159 IG-MARAAEMAFTGDAIDAATALEWGLVSRVVPA-DQLLPAARALAERIAANP--PHALRLTKRLLREGQ 224 (266)
T ss_pred hh-HHHHHHHHHcCCCcCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhh
Confidence 99 8999999999999999999999999999997 889999999999999998 899999999997653
No 20
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.2e-49 Score=332.75 Aligned_cols=210 Identities=21% Similarity=0.371 Sum_probs=189.7
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|||||| +.|++|.+|+.+|.+++++++.|+++| +||++|.|++||+|.|++++..... ...
T Consensus 4 i~~~~~~~v~~itl~rp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~----~~~ 75 (257)
T PRK07658 4 LSVRVEDHVAVITLNHP---PANALSSQVLHELSELLDQVEKDDNVR-VVVIHGEGRFFSAGADIKEFTSVTE----AEQ 75 (257)
T ss_pred EEEEeeCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCceEeCcCHHHHhccCc----hhh
Confidence 57788999999999999 459999999999999999999999999 9999999999999999998754211 122
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+....++++.+|.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| .+++++++| .
T Consensus 76 ~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~ 152 (257)
T PRK07658 76 ATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATES-AKLGLPELNLGL-IPGFAGTQRLPRYVG-K 152 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCC-CcccCcccccCC-CCCCcHHHHHHHHhC-H
Confidence 3334556677889999999999999999999999999999999999988 899999999999 78887 579999999 8
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
.++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 153 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 214 (257)
T PRK07658 153 AKALEMMLTSEPITGAEALKWGLVNGVFPE-ETLLDDAKKLAKKIAGKS--PATTRAVLELLQTT 214 (257)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCcCeecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 999999999999999999999999999997 899999999999999998 89999999998754
No 21
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.5e-49 Score=332.02 Aligned_cols=209 Identities=26% Similarity=0.372 Sum_probs=188.1
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|||||| +.|++|.+|+.+|.++++++++|+++| +||++|.| ++||+|.|++++... . ..
T Consensus 5 v~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~al~~~~~d~~vr-vvVl~g~g~~~F~aG~Dl~~~~~~-~----~~ 75 (258)
T PRK09076 5 LDLEIDGHVAILTLNNP---PANTWTADSLQALKQLVLELNADKDVY-ALVITGDGEKFFSAGADLNLFADG-D----KA 75 (258)
T ss_pred EEEEEECCEEEEEECCC---CcCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCceEeCcCHHHHhhc-C----hh
Confidence 56788899999999999 459999999999999999999999999 99999998 799999999987542 1 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+...+..++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 76 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG- 152 (258)
T PRK09076 76 VAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQ-AQMALPEASVGL-LPCAGGTQNLPWLVG- 152 (258)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCC-CEeeCcccccCC-CCCccHHHHHHHHhC-
Confidence 12234455677889999999999999999999999999999999999988 899999999999 68776 578999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
...+++++++|++++|+||+++|||++|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 153 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 215 (258)
T PRK09076 153 EGWAKRMILCGERVDAATALRIGLVEEVVEK-GEAREAALALAQKVANQS--PSAVAACKTLIQAA 215 (258)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCceecCc-hhHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 8999999999999999999999999999998 889999999999999998 89999999998754
No 22
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=7.9e-49 Score=323.76 Aligned_cols=204 Identities=22% Similarity=0.297 Sum_probs=184.4
Q ss_pred eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHH
Q 026127 7 HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMV 86 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 86 (243)
+++|++|+|||| +.|++|.+|+.+|.+++++++.|+++| +||+||.|++||+|.|++++..... .......
T Consensus 15 ~~~i~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~~-----~~~~~~~ 85 (222)
T PRK05869 15 DAGLATLLLSRP---PTNALTRQVYREIVAAANELGRRDDVA-AVILYGGHEIFSAGDDMPELRTLSA-----QEADTAA 85 (222)
T ss_pred cCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcCcCcCHHHHhccCh-----hhHHHHH
Confidence 489999999999 559999999999999999999999999 9999999999999999998764211 1122234
Q ss_pred HHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCHHHHHH
Q 026127 87 ESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSATARRD 165 (243)
Q Consensus 87 ~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a~~ 165 (243)
+.+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ..++++++| ...+++
T Consensus 86 ~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~ig-~~~a~~ 162 (222)
T PRK05869 86 RVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDN-VKFGATEILAGL-APSGDGMARLTRAAG-PSRAKE 162 (222)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCC-CEEcCchhccCC-CCCccHHHHHHHHhC-HHHHHH
Confidence 45678899999999999999999999999999999999999987 899999999999 67775 568999999 899999
Q ss_pred HHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~~--~~a~~~~K~~~~~~ 219 (222)
T PRK05869 163 LVFSGRFFDAEEALALGLIDEMVAP-DDVYDAAAAWARRFLDGP--PHALAAAKAGISDV 219 (222)
T ss_pred HHHcCCCcCHHHHHHCCCCCEeeCc-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHH
Confidence 9999999999999999999999998 899999999999999998 99999999999754
No 23
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.8e-49 Score=331.97 Aligned_cols=215 Identities=27% Similarity=0.346 Sum_probs=188.3
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++||||||+ +.|++|.+|+.+|.+++++++ |++++ +||++|.|++||+|.|++++..... ......
T Consensus 6 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~~~~~~-d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~ 80 (262)
T PRK08140 6 ILLAIEAGVATLTLNRPD--KLNSFTREMHRELREALDQVE-DDGAR-ALLLTGAGRGFCAGQDLADRDVTPG-GAMPDL 80 (262)
T ss_pred EEEEeECCEEEEEecCCc--ccCCCCHHHHHHHHHHHHHhc-CCCce-EEEEECCCCCcccCcChHHHhcccc-ccchhh
Confidence 567889999999999997 899999999999999999999 99999 9999999999999999998753210 000111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+..++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~vG-~ 157 (262)
T PRK08140 81 GESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARS-ASFIQAFVKIGL-VPDSGGTWFLPRLVG-M 157 (262)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCC-CEEeccccccCC-CCCccHHHHHHHHhC-H
Confidence 1222333456788999999999999999999999999999999999998 889999999999 67766 579999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
.++++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++....
T Consensus 158 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~~--~~a~~~~K~~l~~~~~ 221 (262)
T PRK08140 158 ARALGLALLGEKLSAEQAEQWGLIWRVVDD-AALADEAQQLAAHLATQP--TRGLALIKQAMNASAT 221 (262)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCccEeeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999998 789999999999999998 8999999999986543
No 24
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.2e-49 Score=332.69 Aligned_cols=208 Identities=22% Similarity=0.302 Sum_probs=187.2
Q ss_pred ceeeE-eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.+++ +++|++|+||||+ +.|++|.+|+.+|.++++++++|+++| +||++|.|++||+|.|++++... + .
T Consensus 9 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~---~--~- 79 (261)
T PRK08138 9 VLLERPADGVALLRLNRPE--ARNALNMEVRQQLAEHFTELSEDPDIR-AIVLTGGEKVFAAGADIKEFATA---G--A- 79 (261)
T ss_pred EEEEEccCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCee-EEEEECCCCCeeCCcCHHHHhcc---c--h-
Confidence 35666 6899999999997 889999999999999999999999999 99999999999999999987642 1 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
...+...+.+++..+.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 80 -~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 155 (261)
T PRK08138 80 -IEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGES-ASFGQPEIKVGL-MPGAGGTQRLVRAVG- 155 (261)
T ss_pred -hHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCC-CEeeCccccccc-CCCCcHHHHHHHHhC-
Confidence 1123344567888999999999999999999999999999999999987 899999999999 78876 579999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
...+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 218 (261)
T PRK08138 156 KFKAMRMALTGCMVPAPEALAIGLVSEVVED-EQTLPRALELAREIARMP--PLALAQIKEVVLAG 218 (261)
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCCcEecCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 789999999999999988 89999999998754
No 25
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.8e-49 Score=332.58 Aligned_cols=213 Identities=23% Similarity=0.329 Sum_probs=191.2
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++++++|++|+ +||++|.| ++||+|.|++++..... +..
T Consensus 13 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~~FcaG~Dl~~~~~~~~---~~~ 86 (269)
T PRK06127 13 LLAEKTGGLGRITFNNPA--RHNAMSLDMWEALPQALAAAEDDDAIR-VVVLTGAGEKAFVSGADISQFEESRS---DAE 86 (269)
T ss_pred eEEEEECCEEEEEecCCC--ccCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEEeCCCCceecCcCHHHHhhccc---chH
Confidence 578889999999999997 899999999999999999999999999 99999998 79999999998754211 122
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+....+.++.+|.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 87 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 163 (269)
T PRK06127 87 AVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAED-SRFGIPAARLGL-GYGYDGVKNLVDLVG- 163 (269)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCC-CEeeCchhhhCC-CCCccHHHHHHHHhC-
Confidence 23344555677889999999999999999999999999999999999988 899999999999 67665 679999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
..++++++++|++++|+||+++|||++|+|+ +++.+++.++|++++..| +.++..+|+.++...
T Consensus 164 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~ 227 (269)
T PRK06127 164 PSAAKDLFYTARRFDAAEALRIGLVHRVTAA-DDLETALADYAATIAGNA--PLTLRAAKRAIAELL 227 (269)
T ss_pred HHHHHHHHHcCCCCCHHHHHHcCCCCEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999997 899999999999999988 899999999997653
No 26
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9e-49 Score=332.37 Aligned_cols=212 Identities=22% Similarity=0.281 Sum_probs=189.2
Q ss_pred ceeeE-eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.+++ +++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|++||+|.|++++..... . ..
T Consensus 13 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~--~~ 86 (268)
T PRK07327 13 LRFDRPPPGVLEIVLNGPG--ALNAADARMHRELADIWRDVDRDPDVR-VVLIRGEGKAFSAGGDLALVEEMAD-D--FE 86 (268)
T ss_pred EEEEecCCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHhhhCCCce-EEEEECCCCCcccccCHHHHhhccC-c--HH
Confidence 45666 5789999999996 789999999999999999999999999 9999999999999999998764211 1 12
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+...+.+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 163 (268)
T PRK07327 87 VRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKD-ARIIDGHTRLGV-AAGDHAAIVWPLLCG- 163 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCC-CEEeCcccccCC-CCCcchhhHHHHHhC-
Confidence 22334455677889999999999999999999999999999999999998 899999999999 67666 578999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
...+++++++|++++|+||+++|||++|+|+ +++.+++.++++++++.| +.+++.+|+.++..
T Consensus 164 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 226 (268)
T PRK07327 164 MAKAKYYLLLCEPVSGEEAERIGLVSLAVDD-DELLPKALEVAERLAAGS--QTAIRWTKYALNNW 226 (268)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHh
Confidence 9999999999999999999999999999997 889999999999999998 99999999999854
No 27
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.7e-49 Score=329.28 Aligned_cols=209 Identities=21% Similarity=0.247 Sum_probs=187.2
Q ss_pred ceeeEeC---cEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcch
Q 026127 2 CTLEKHG---DVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGA 78 (243)
Q Consensus 2 ~~~~~~~---~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~ 78 (243)
+.+++++ +|++|+||||+ +.|++|.+|+++|.+++++++.|+++| +||++|.|++||+|.|++++..... .
T Consensus 5 i~~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~--~- 78 (251)
T PRK06023 5 ILVERPGAHPGVQVIRFNRPE--KKNAITRAMYATMAKALKAADADDAIR-AHVFLGTEGCFSAGNDMQDFLAAAM--G- 78 (251)
T ss_pred EEEEeecCcCcEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCeecCcCHHHHhhccc--c-
Confidence 5677776 49999999997 899999999999999999999999999 9999999999999999998754211 1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhH-HHHHHHh
Q 026127 79 RERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA-ALFRAKV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-~~l~~~~ 157 (243)
. ..+...+.+++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+ .++++++
T Consensus 79 ~---~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~~ 153 (251)
T PRK06023 79 G---TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPR-SLFRTPFVDLAL-VPEAGSSLLAPRLM 153 (251)
T ss_pred c---hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCC-CEecCcccccCC-CCCchHHHHHHHHH
Confidence 1 112334567888999999999999999999999999999999999987 899999999999 788774 6899999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
| ..++++++++|++++|+||+++|||++|+|. +++.+++.+++++++..| +.++..+|+.++..
T Consensus 154 g-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 217 (251)
T PRK06023 154 G-HQRAFALLALGEGFSAEAAQEAGLIWKIVDE-EAVEAETLKAAEELAAKP--PQALQIARDLMRGP 217 (251)
T ss_pred h-HHHHHHHHHhCCCCCHHHHHHcCCcceeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhc
Confidence 9 9999999999999999999999999999997 889999999999999998 99999999999753
No 28
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=1.2e-48 Score=330.40 Aligned_cols=211 Identities=22% Similarity=0.329 Sum_probs=190.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||++|.| ++||+|+|++++.... ..
T Consensus 6 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~~~~~~~d~~v~-~vvl~g~g~~~F~aG~Dl~~~~~~~-----~~ 77 (260)
T PRK05809 6 VILEKEGHIAVVTINRPK--ALNALNSETLKELDTVLDDIENDDNVY-AVILTGAGEKAFVAGADISEMKDLN-----EE 77 (260)
T ss_pred EEEEEeCCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHhcCCCcE-EEEEEcCCCCceeeCcChHhHhccC-----hH
Confidence 467888999999999997 889999999999999999999999999 99999999 9999999999875421 12
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+.....+++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 154 (260)
T PRK05809 78 EGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEK-AKFGQPEVGLGI-TPGFGGTQRLARIVG- 154 (260)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCC-CEEeCcccccCC-CCCccHHHHHHHHhC-
Confidence 22334455577888999999999999999999999999999999999988 899999999999 78887 568999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
...+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 155 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 218 (260)
T PRK05809 155 PGKAKELIYTGDMINAEEALRIGLVNKVVEP-EKLMEEAKALANKIAANA--PIAVKLCKDAINRGM 218 (260)
T ss_pred HHHHHHHHHhCCCCCHHHHHHcCCCCcccCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999997 899999999999999998 899999999997653
No 29
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-48 Score=330.63 Aligned_cols=213 Identities=25% Similarity=0.368 Sum_probs=191.8
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+|+.+|.+++++++.|+++| +||++|.|+.||+|.|++++..... .....
T Consensus 5 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVl~g~g~~F~~G~Dl~~~~~~~~--~~~~~ 79 (260)
T PRK07511 5 LLSRREGSTLVLTLSNPG--ARNALHPDMYAAGIEALNTAERDPSIR-AVVLTGAGGFFCAGGNLNRLLENRA--KPPSV 79 (260)
T ss_pred eEEEeECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHhccCCCeE-EEEEECCCCCcccCcCHHHHhhccc--ccchh
Confidence 567889999999999997 889999999999999999999999999 9999999999999999998764211 11223
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg-~ 156 (260)
T PRK07511 80 QAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARD-AKFVMAYVKVGL-TPDGGGSWFLARALP-R 156 (260)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCC-CEEeccccccCc-CCCchHHHHHHHHhC-H
Confidence 3445567788999999999999999999999999999999999999998 899999999999 68776 578999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
..+++++++|++++++||+++||||+|+++ +++.+++.++++++++.| +.++..+|+.++..
T Consensus 157 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~l~~~~--~~~~~~~K~~l~~~ 218 (260)
T PRK07511 157 QLATELLLEGKPISAERLHALGVVNRLAEP-GQALAEALALADQLAAGS--PNALARIKSLIADA 218 (260)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCccEeeCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 999999999999999999999999999998 789999999999999987 88999999998754
No 30
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=1.2e-48 Score=332.76 Aligned_cols=215 Identities=20% Similarity=0.326 Sum_probs=188.9
Q ss_pred eeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCC--cch---
Q 026127 4 LEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSR--TGA--- 78 (243)
Q Consensus 4 ~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~--~~~--- 78 (243)
.+.+++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++| +||++|.|++||+|+|++++...... ..+
T Consensus 12 ~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-vvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 88 (275)
T PLN02664 12 KSPNSSVFHLNLNRPS--QRNALSLDFFTEFPKALSSLDQNPNVS-VIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGR 88 (275)
T ss_pred ecCCCCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEECCCCceeeCcChHHhhhcccccccccchh
Confidence 4457899999999997 899999999999999999999999999 99999999999999999987542110 000
Q ss_pred -HHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHH
Q 026127 79 -RERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAK 156 (243)
Q Consensus 79 -~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~ 156 (243)
......+...+++++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ .|++| .++++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~ 166 (275)
T PLN02664 89 SGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSED-AFFSVKEVDLAI-TADLGTLQRLPSI 166 (275)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCC-CEeccHHHhhCC-CCCccHHHHHHHH
Confidence 1223344455677888999999999999999999999999999999999998 899999999999 67776 5689999
Q ss_pred hCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
+| ..++++++++|++++|+||+++||||+|+|+.+++.+.+.+++++++..| +.+++.+|+.++...
T Consensus 167 vG-~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~--p~a~~~~K~~l~~~~ 233 (275)
T PLN02664 167 VG-YGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKS--PLAVTGTKAVLLRSR 233 (275)
T ss_pred hC-HHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 99 99999999999999999999999999999854789999999999999998 999999999987653
No 31
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1e-49 Score=325.74 Aligned_cols=212 Identities=21% Similarity=0.304 Sum_probs=188.2
Q ss_pred eeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHH
Q 026127 4 LEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLH 83 (243)
Q Consensus 4 ~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 83 (243)
...+++|+.|+||||+ .+|+++..++.+|.+++..++.|++++ ++|+||.|+.||+|.|++++..... .+
T Consensus 41 ~~~d~~I~lItlNRP~--~~Nal~~~~m~eL~~A~~~~e~D~s~~-viVltG~gksFcsG~Dl~e~~~~~~----~~--- 110 (290)
T KOG1680|consen 41 VGEDNGIALITLNRPK--ALNALCRATMLELAEAFKDFESDDSVG-VIVLTGSGKSFCSGADLKEMKKDEF----QD--- 110 (290)
T ss_pred eecCCCeEEEEeCChH--HhccccHHHHHHHHHHHHHhhccCccc-EEEEEcCCCccccccCHHHHhhccc----cc---
Confidence 4457899999999997 899999999999999999999999999 9999999999999999999876321 11
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCHHH
Q 026127 84 YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSATA 162 (243)
Q Consensus 84 ~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~ 162 (243)
-....+.+.+..+.+.+||+||+|||+|+|||++|++.||+|||+++ ++|++|+.++|+ +|+|| +.+|++.+| .++
T Consensus 111 ~~~~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~-Akfg~~~~~~Gi-~p~~GGT~rl~r~vG-~s~ 187 (290)
T KOG1680|consen 111 VSDGIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEG-AKFGFFEIRMGI-IPSWGGTQRLPRIVG-KSR 187 (290)
T ss_pred cccccccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCC-CeecccccccCC-ccCCCchhhHHHHhC-hHH
Confidence 11122344555556899999999999999999999999999999988 899999999999 89887 579999999 999
Q ss_pred HHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 163 RRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 163 a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
|+++++||++++|+||+++|||++|+|. ++++++|.+++++|+++| +..+...|+.++......+.
T Consensus 188 Ale~~ltg~~~~AqeA~~~GlVn~Vvp~-~~~l~eAv~l~~~Ia~~~--~~~v~~~K~svn~~~e~~l~ 253 (290)
T KOG1680|consen 188 ALEMILTGRRLGAQEAKKIGLVNKVVPS-GDALGEAVKLAEQIAKNS--PLVVRADKESVNAAYETTLF 253 (290)
T ss_pred HHHHHHhcCcccHHHHHhCCceeEeecc-hhHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhhccHH
Confidence 9999999999999999999999999999 889999999999999998 99999999999885544433
No 32
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=1.1e-48 Score=328.88 Aligned_cols=205 Identities=23% Similarity=0.369 Sum_probs=186.4
Q ss_pred eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC-CCcccCCCChhhHHhcCCCcchHHHHHHH
Q 026127 7 HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH-GKFFSNGFDLAWAQAAGSRTGARERLHYM 85 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 85 (243)
+++|++||||||+ +.|++|.+|+.+|.++++++++|+++| +||++|. |++||+|.|++++... . ......+
T Consensus 2 ~~~v~~itlnrp~--~~Nal~~~~~~~l~~~~~~~~~d~~vr-~vVl~g~~g~~F~aG~Dl~~~~~~-~----~~~~~~~ 73 (251)
T PLN02600 2 DSGIVELRLDRPE--AKNAIGKEMLRGLRSAFEKIQADASAR-VVMLRSSVPGVFCAGADLKERRKM-S----PSEVQKF 73 (251)
T ss_pred CCcEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEecCCCCceeeCcCHHHHhcc-C----hHHHHHH
Confidence 4789999999997 889999999999999999999999999 9999998 5899999999987542 1 1223345
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCHHHHH
Q 026127 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSATARR 164 (243)
Q Consensus 86 ~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a~ 164 (243)
...++.++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| ...++
T Consensus 74 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~~G-~~~a~ 150 (251)
T PLN02600 74 VNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEE-AVFGLPETGLAI-IPGAGGTQRLPRLVG-RSRAK 150 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCC-CEEeCcccccCc-CCCchHHHHHHHHhC-HHHHH
Confidence 566778889999999999999999999999999999999999998 899999999999 68776 569999999 99999
Q ss_pred HHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 165 DVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 165 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
+|+++|+.++++||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 151 ~l~ltg~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~la~~~--p~a~~~~K~~l~~~ 208 (251)
T PLN02600 151 ELIFTGRRIGAREAASMGLVNYCVPA-GEAYEKALELAQEINQKG--PLAIKMAKKAINEG 208 (251)
T ss_pred HHHHhCCccCHHHHHHcCCCcEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 99999999999999999999999998 889999999999999998 99999999999754
No 33
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=1.4e-48 Score=329.59 Aligned_cols=211 Identities=21% Similarity=0.314 Sum_probs=185.4
Q ss_pred ceeeE-eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchH
Q 026127 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 2 ~~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~ 79 (243)
+.+++ +++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++| +||+||.| ++||+|+|++++..... .. .
T Consensus 4 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~el~~~l~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~~~-~~-~ 78 (259)
T TIGR01929 4 IRYEKSTDGIAKITINRPQ--VRNAFRPLTVKEIIQALDDAREDPDIG-VVILTGAGDKAFCSGGDQKVRGDYGY-ID-D 78 (259)
T ss_pred EEEEEcCCCEEEEEecCCc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEEeCCCCceEeCcChHhHhhccc-cc-h
Confidence 35677 8999999999997 889999999999999999999999999 99999999 79999999997643111 00 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChh-hHHHHHHHhC
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDY-FAALFRAKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~-g~~~l~~~~g 158 (243)
.... ...+..++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++ ++.++++++|
T Consensus 79 ~~~~--~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~-~p~~~~~~~l~~~vG 154 (259)
T TIGR01929 79 SGVH--RLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAEN-ARFGQTGPKVGS-FDGGYGSSYLARIVG 154 (259)
T ss_pred hhHH--HHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCC-CEecCccccccc-CCCccHHHHHHHHhH
Confidence 1111 112456788899999999999999999999999999999999988 899999999999 6665 4679999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
+.++++++++|++++|+||+++|||++|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 155 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 217 (259)
T TIGR01929 155 -QKKAREIWFLCRQYDAEQALDMGLVNTVVPL-ADLEKETVRWCREILQKS--PMAIRMLKAALNAD 217 (259)
T ss_pred -HHHHHHHHHhCCccCHHHHHHcCCcccccCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 9999999999999999999999999999997 899999999999999998 99999999999764
No 34
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-48 Score=330.28 Aligned_cols=210 Identities=21% Similarity=0.364 Sum_probs=190.1
Q ss_pred ceeeE-eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchH
Q 026127 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 2 ~~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~ 79 (243)
+.+++ +++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||++|.| ++||+|.|++++... . .
T Consensus 5 v~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~v~-~vVl~g~g~~~F~aG~Dl~~~~~~-~----~ 76 (260)
T PRK07657 5 ISVDYVTPHVVKITLNRPR--AANALSLALLEELQNILTQINEEANVR-VVILTGAGEKAFCAGADLKERAGM-N----E 76 (260)
T ss_pred EEEEEccCCEEEEEEeCCc--ccCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEecCCCCceEcCcChHhhhcC-C----h
Confidence 56776 7899999999997 899999999999999999999999999 99999999 599999999987542 1 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhC
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g 158 (243)
.....+...+++++.+|.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~vG 154 (260)
T PRK07657 77 EQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAES-ASLGLTETTLAI-IPGAGGTQRLPRLIG 154 (260)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCC-CEEcCchhccCc-CCCccHHHHHHHHhC
Confidence 223445566778899999999999999999999999999999999999988 899999999999 68776 578999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
...+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 155 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 217 (260)
T PRK07657 155 -VGRAKELIYTGRRISAQEAKEIGLVEFVVPA-HLLEEKAIEIAEKIASNG--PIAVRQAKEAISNG 217 (260)
T ss_pred -HHHHHHHHHhCCCCCHHHHHHcCCCCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 8999999999999999999999999999998 889999999999999998 89999999999764
No 35
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-48 Score=330.89 Aligned_cols=213 Identities=19% Similarity=0.248 Sum_probs=185.1
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
++.++++++|++|+||||+ +.|++|.+|+++|.+++++++.|+++| +||+||.|++||+|.|++++..... .+..
T Consensus 6 ~i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~--~~~~ 80 (263)
T PRK07799 6 HALVEQRGHTLIVTMNRPE--ARNALSTEMLRIMVDAWDRVDNDPDIR-SCILTGAGGAFCAGMDLKAATKKPP--GDSF 80 (263)
T ss_pred eEEEEEECCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCccccccCHHHHhhccc--cchh
Confidence 3678889999999999997 889999999999999999999999999 9999999999999999998764211 1010
Q ss_pred HHHHH-HHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhC
Q 026127 81 RLHYM-VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVG 158 (243)
Q Consensus 81 ~~~~~-~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g 158 (243)
....+ ...+.. +.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ..++++++|
T Consensus 81 ~~~~~~~~~~~~-~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG 157 (263)
T PRK07799 81 KDGSYDPSRIDA-LLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGES-AKFGISEAKWSL-FPMGGSAVRLVRQIP 157 (263)
T ss_pred hhhhhhhhHHHH-HHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCC-CEecCcccccCc-CCCccHHHHHHHHhC
Confidence 00001 112222 33578999999999999999999999999999999988 899999999999 78776 568999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
...+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 158 -~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~~~~~--~~a~~~~K~~l~~~ 220 (263)
T PRK07799 158 -YTVACDLLLTGRHITAAEAKEIGLIGHVVPD-GQALDKALELAELINANG--PLAVQAILRTIRET 220 (263)
T ss_pred -HHHHHHHHHcCCCCCHHHHHHcCCccEecCc-chHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 789999999999999998 89999999999764
No 36
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=7.1e-49 Score=329.28 Aligned_cols=215 Identities=28% Similarity=0.455 Sum_probs=198.6
Q ss_pred eeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHH
Q 026127 3 TLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERL 82 (243)
Q Consensus 3 ~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 82 (243)
.++++|+|++|+||+|+ +.|++|.+++++|.++++.+++|+++| +||++|.++.||+|.|++++... +.+..
T Consensus 1 ~~~~~~~v~~i~ln~p~--~~N~l~~~~~~~l~~~l~~~~~d~~v~-vvv~~~~~~~F~~G~Dl~~~~~~-----~~~~~ 72 (245)
T PF00378_consen 1 KYEIEDGVATITLNRPE--KRNALNPEMLDELEEALDEAEADPDVK-VVVISGGGKAFCAGADLKEFLNS-----DEEEA 72 (245)
T ss_dssp EEEEETTEEEEEEECGG--GTTEBSHHHHHHHHHHHHHHHHSTTES-EEEEEESTSESBESB-HHHHHHH-----HHHHH
T ss_pred CEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhcCCcc-EEEEeecccccccccchhhhhcc-----ccccc
Confidence 37899999999999997 899999999999999999999999999 99999999999999999998863 35677
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCHH
Q 026127 83 HYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSAT 161 (243)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~ 161 (243)
..+.+.+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| ..
T Consensus 73 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~r~~g-~~ 149 (245)
T PF00378_consen 73 REFFRRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAED-AKFGFPEVRLGI-FPGAGGTFRLPRLIG-PS 149 (245)
T ss_dssp HHHHHHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETT-TEEETGGGGGTS-SSTSTHHHHHHHHHH-HH
T ss_pred cccchhhccccccchhhhhheeecccccccccccccccccceEEeecc-cceeeeecccCc-ccccccccccceeee-cc
Confidence 788899999999999999999999999999999999999999999998 789999999999 67665 679999999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
.+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..+...++
T Consensus 150 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~~~~~~~~~~~ 216 (245)
T PF00378_consen 150 RARELLLTGEPISAEEALELGLVDEVVPD-EELDEEALELAKRLAAKP--PSALRATKKALNRALEQSLE 216 (245)
T ss_dssp HHHHHHHHTCEEEHHHHHHTTSSSEEESG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHSHHH
T ss_pred cccccccccccchhHHHHhhcceeEEcCc-hhhhHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999998 679999999999999998 99999999999886444433
No 37
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-48 Score=329.59 Aligned_cols=213 Identities=22% Similarity=0.319 Sum_probs=187.0
Q ss_pred ceeeEe-CcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKH-GDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~-~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++ ++|++|+||||+ +.|++|.+|+.+|.+++++++.|++++ +||++|.|++||+|.|++++..... .. ..
T Consensus 6 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~-~~ 80 (262)
T PRK07468 6 IRIAVDARGVATLTLNRPE--KHNALSARMIAELTTAARRLAADAAVR-VVVLTGAGKSFCAGGDLGWMRAQMT-AD-RA 80 (262)
T ss_pred EEEEEcCCcEEEEEEcCcc--cccCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCcccCCcCHHHHHhhcc-cc-hh
Confidence 456675 689999999997 899999999999999999999999999 9999999999999999998753211 01 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCH
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~ 160 (243)
........+..++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+.++.+++| .
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~~~~vG-~ 157 (262)
T PRK07468 81 TRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSG-ARFGLTETRLGL-IPATISPYVVARMG-E 157 (262)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCC-CEEeCchhccCC-CcccchhhHHhhcc-H
Confidence 11122344667889999999999999999999999999999999999988 899999999999 78887665667899 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
..+++|+++|++++|+||+++|||++|+|+ +++.+.+.++++++++.| +.++..+|+.++..
T Consensus 158 ~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l~~~~~~~a~~l~~~~--~~a~~~~K~~l~~~ 219 (262)
T PRK07468 158 ANARRVFMSARLFDAEEAVRLGLLSRVVPA-ERLDAAVEAEVTPYLSCA--PGAVAAAKALVRAL 219 (262)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhh
Confidence 999999999999999999999999999997 889999999999999998 89999999998754
No 38
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-48 Score=328.30 Aligned_cols=206 Identities=21% Similarity=0.291 Sum_probs=182.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+++|.+++++++.|++|| +||++|.|++||+|.|++++.... . ...
T Consensus 5 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~---~-~~~ 77 (254)
T PRK08252 5 VLVERRGRVLIITINRPE--ARNAVNAAVAQGLAAALDELDADPDLS-VGILTGAGGTFCAGMDLKAFARGE---R-PSI 77 (254)
T ss_pred EEEEEECCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCceEcCcCHHHHhccc---c-hhh
Confidence 678899999999999997 889999999999999999999999999 999999999999999999876421 1 111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
....+..++. ..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 78 ---~~~~~~~~~~--~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg-~ 149 (254)
T PRK08252 78 ---PGRGFGGLTE--RPPRKPLIAAVEGYALAGGFELALACDLIVAARD-AKFGLPEVKRGL-VAAGGGLLRLPRRIP-Y 149 (254)
T ss_pred ---hHHHHHHHHH--hcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCC-CEEeCchhhcCC-CCCchHHHHHHHHcC-H
Confidence 1112222222 4799999999999999999999999999999988 899999999999 67766 679999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
..+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 150 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 211 (254)
T PRK08252 150 HIAMELALTGDMLTAERAHELGLVNRLTEP-GQALDAALELAERIAANG--PLAVAASKRIVVES 211 (254)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 899999999999999998 99999999999765
No 39
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-48 Score=330.09 Aligned_cols=216 Identities=26% Similarity=0.363 Sum_probs=190.1
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcC-CCCeEEEEecCCCcccCCCChhhHHhcCCCc-chH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEA-TPGSALITTSHGKFFSNGFDLAWAQAAGSRT-GAR 79 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~-~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~-~~~ 79 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|+ ++| +||++|.|++||+|+|++++....... ...
T Consensus 6 v~~~~~~~i~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~~v~-vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (266)
T PRK05981 6 VTLDFDGGVAILTLDHPE--VMNAVSIDMLGGLAEALDAIEDGKAEVR-CLVLTGAGRGFCTGANLQGRGSGGRESDSGG 82 (266)
T ss_pred EEEEeECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCceE-EEEEeCCCCCcccccCHHhhhcccccccccc
Confidence 577889999999999997 889999999999999999999876 499 999999999999999999875421100 001
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhC
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g 158 (243)
.....+...+++++.+|.++||||||+|||+|+|+|++|+++||+|||+++ ++|++||.++|+ +|++| .+++++++|
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~~e~~lG~-~p~~g~~~~l~~~vg 160 (266)
T PRK05981 83 DAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARS-AYFLQAFRRIGL-VPDGGSTWLLPRLVG 160 (266)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCC-CEEechHhhcCC-CCCccHHHHHHHHhH
Confidence 112334455678999999999999999999999999999999999999988 899999999999 78876 568999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
+..+++++++|++++|+||+++|||++|+|+ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 161 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~~~~~~ 224 (266)
T PRK05981 161 -KARAMELSLLGEKLPAETALQWGLVNRVVDD-AELMAEAMKLAHELANGP--TVALGLIRKLYWDSP 224 (266)
T ss_pred -HHHHHHHHHhCCCcCHHHHHHcCCceEeeCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998 789999999999999988 889999999997653
No 40
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-48 Score=328.83 Aligned_cols=210 Identities=23% Similarity=0.343 Sum_probs=191.1
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+++.+|.+++++++.|+++| +||++|.|+.||+|.|++++..... ..
T Consensus 7 i~~~~~~~v~~i~lnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~----~~- 78 (259)
T PRK06688 7 LLVELEDGVLTITINRPD--KKNALTAAMYQALADALEAAATDPAVR-VVVLTGAGRAFSAGGDIKDFPKAPP----KP- 78 (259)
T ss_pred eEEEEECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCccCccCHHHHhccCc----ch-
Confidence 567889999999999997 899999999999999999999999999 9999999999999999998865321 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
..+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| .
T Consensus 79 -~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~~G-~ 154 (259)
T PRK06688 79 -PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASES-AKFSLPFAKLGL-CPDAGGSALLPRLIG-R 154 (259)
T ss_pred -HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCC-CEecCchhhcCC-CCCcchhhHHHHHhh-H
Confidence 234556778899999999999999999999999999999999999988 899999999999 68776 578999999 8
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
..+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 155 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~i~~~~--~~a~~~~K~~l~~~~ 217 (259)
T PRK06688 155 ARAAEMLLLGEPLSAEEALRIGLVNRVVPA-AELDAEADAQAAKLAAGP--ASALRYTKRAINAAT 217 (259)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence 999999999999999999999999999997 899999999999999998 889999999987653
No 41
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.8e-48 Score=326.05 Aligned_cols=213 Identities=21% Similarity=0.311 Sum_probs=190.4
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+++.+|.+++++++.|+++| +||++|.|++||+|.|++++..... ..
T Consensus 7 ~~~~~~~~v~~i~ln~p~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~----~~- 78 (249)
T PRK07110 7 ELREVEEGIAQVTMQDRV--NKNAFSDELCDQLHEAFDTIAQDPRYK-VVILTGYPNYFATGGTQEGLLSLQT----GK- 78 (249)
T ss_pred EEEEeeCCEEEEEecCCC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCeeCCcChHHHhhccc----hh-
Confidence 467889999999999997 889999999999999999999999999 9999999999999999998764211 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
..+.. ++++..+.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| +
T Consensus 79 -~~~~~--~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~~g-~ 152 (249)
T PRK07110 79 -GTFTE--ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRE-SVYTANFMKYGF-TPGMGATAILPEKLG-L 152 (249)
T ss_pred -hhHhh--HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCC-CEecCchhccCC-CCCchHHHHHHHHhC-H
Confidence 11221 57888999999999999999999999999999999999998 899999999999 67776 579999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
..+++++++|++++++||+++|||++|+++ +++.+++.++++++++.| +.++..+|+.++......++
T Consensus 153 ~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~ 220 (249)
T PRK07110 153 ALGQEMLLTARYYRGAELKKRGVPFPVLPR-AEVLEKALELARSLAEKP--RHSLVLLKDHLVADRRRRLP 220 (249)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCCeEEeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhccHH
Confidence 999999999999999999999999999997 889999999999999998 89999999999866544443
No 42
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.1e-48 Score=330.38 Aligned_cols=215 Identities=21% Similarity=0.305 Sum_probs=187.6
Q ss_pred ceeeE-eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCc--ch
Q 026127 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRT--GA 78 (243)
Q Consensus 2 ~~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~--~~ 78 (243)
+.+++ +++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||++|.|++||+|.|++++....... .+
T Consensus 11 v~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-vvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 87 (276)
T PRK05864 11 VLVDHPRPEIALITLNRPE--RMNSMAFDVMVPLKEALAEVSYDNSVR-VVVLTGAGRGFSSGADHKSAGVVPHVEGLTR 87 (276)
T ss_pred eEEeeecCCEEEEEecCCc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCeecCcchhhhhcccccccccc
Confidence 55676 7899999999997 889999999999999999999999999 999999999999999999874311000 00
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCC-hhh-HHHHHHH
Q 026127 79 RERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLP-DYF-AALFRAK 156 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p-~~g-~~~l~~~ 156 (243)
..........+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +| ++| +++++++
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~~g~~~~l~~~ 165 (276)
T PRK05864 88 PTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSS-AYFRAAGINNGL-TASELGLSYLLPRA 165 (276)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCC-CEecCcccccCC-CCCCcchheehHhh
Confidence 1111223445677888999999999999999999999999999999999988 899999999999 55 666 4689999
Q ss_pred hCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
+| ...+++++++|++++|+||+++|||++|+++ +++.+++.++|++|+..| +.++..+|+.++..
T Consensus 166 vG-~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~ 230 (276)
T PRK05864 166 IG-SSRAFEIMLTGRDVDAEEAERIGLVSRQVPD-EQLLDTCYAIAARMAGFS--RPGIELTKRTLWSG 230 (276)
T ss_pred hC-HHHHHHHHHcCCccCHHHHHHcCCcceeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 99 8999999999999999999999999999998 899999999999999998 88999999998753
No 43
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-48 Score=327.70 Aligned_cols=208 Identities=24% Similarity=0.267 Sum_probs=182.0
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++++++|+++| +||++|.|++||+|.|++++..... ..
T Consensus 5 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvltg~g~~FcaG~Dl~~~~~~~~----~~- 76 (254)
T PRK08259 5 VRVERNGPVTTVILNRPE--VRNAVDGPTAAALADAFRAFDADDAAS-VAVLWGAGGTFCAGADLKAVGTGRG----NR- 76 (254)
T ss_pred EEEEEECCEEEEEecCCc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCccCCcChHHHhcccc----hh-
Confidence 467889999999999997 889999999999999999999999999 9999999999999999998754211 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
.... ....+...+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|.+| ++++++++| .
T Consensus 77 ~~~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG-~ 151 (254)
T PRK08259 77 LHPS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEED-AVFGVFCRRWGV-PLIDGGTVRLPRLIG-H 151 (254)
T ss_pred hhhh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCC-CEecCcccccCC-CCCccHHHHHHHHhC-H
Confidence 1100 0111222334799999999999999999999999999999998 899999999999 67665 578999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
..+++++++|+.++|+||+++||||+|+|+ +++.+++.++|+++++.| +.++..+|+.++..
T Consensus 152 ~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~ 213 (254)
T PRK08259 152 SRAMDLILTGRPVDADEALAIGLANRVVPK-GQARAAAEELAAELAAFP--QTCLRADRLSALEQ 213 (254)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCCCEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 899999999999999998 99999999999764
No 44
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.6e-48 Score=327.44 Aligned_cols=209 Identities=22% Similarity=0.407 Sum_probs=188.9
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++++ .|+++| +||++|.|++||+|.|++++..... ...
T Consensus 8 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~-~d~~vr-vvvl~g~g~~F~aG~Dl~~~~~~~~----~~~ 79 (260)
T PRK07659 8 VVVKYEGRVATIMLNRPE--ALNALDEPMLKELLQALKEV-AESSAH-IVVLRGNGRGFSAGGDIKMMLSSND----ESK 79 (260)
T ss_pred EEEEeeCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHh-cCCCee-EEEEECCCCCcccccCHHHHhhccC----chh
Confidence 567889999999999997 88999999999999999999 588999 9999999999999999998764211 222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+++++.++..+||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~~~vg-~ 156 (260)
T PRK07659 80 FDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADIS-AKLAMNFIGIGL-IPDGGGHFFLQKRVG-E 156 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCC-CEEcCchhhcCC-CCCCchhhhHHHhcC-H
Confidence 3445666788899999999999999999999999999999999999988 899999999999 67765 578999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
..+++++++|+.++|+||+++||||+|+ + +++.+++.+++++++..| +.++..+|+.++..
T Consensus 157 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 217 (260)
T PRK07659 157 NKAKQIIWEGKKLSATEALDLGLIDEVI-G-GDFQTAAKQKISEWLQKP--LKAMIETKQIYCEL 217 (260)
T ss_pred HHHHHHHHhCCccCHHHHHHcCChHHHh-h-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 6 789999999999999998 89999999998754
No 45
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=3.1e-48 Score=328.36 Aligned_cols=208 Identities=20% Similarity=0.327 Sum_probs=185.2
Q ss_pred ceeeE-eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.+++ +++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||++|.|++||+|+|++++..... ..
T Consensus 11 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~----~~ 83 (265)
T PLN02888 11 ILVPKSRNGIATITINRPK--ALNALTRPMMVELAAAFKRLDEDDSVK-VIILTGSGRAFCSGVDLTAAEEVFK----GD 83 (265)
T ss_pred EEEEeccCCEEEEEEcCCC--cccCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCcccCCCCHHHHHhhcc----ch
Confidence 45665 6899999999997 789999999999999999999999999 9999999999999999998653211 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
. .....+++..|.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 84 -~---~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 156 (265)
T PLN02888 84 -V---KDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRG-AKFIDTHAKFGI-FPSWGLSQKLSRIIG- 156 (265)
T ss_pred -h---hHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCC-CEecCccccccC-CCCccHhhHHHHHhC-
Confidence 1 112345677889999999999999999999999999999999988 899999999999 68876 568999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
..++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..+ +.+++.+|+.++...
T Consensus 157 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 220 (265)
T PLN02888 157 ANRAREVSLTAMPLTAETAERWGLVNHVVEE-SELLKKAREVAEAIIKNN--QGMVLRYKSVINDGL 220 (265)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCccEeeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999998 789999999999999998 889999999997653
No 46
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-47 Score=318.78 Aligned_cols=215 Identities=23% Similarity=0.332 Sum_probs=191.9
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+| +.|++|.+++.+|.++++.++ ++++ +||++|.|++||+|.|++++... ...
T Consensus 5 i~~~~~~~v~~itln~~---~~Nal~~~~~~~l~~~l~~~~--~~~~-vvvl~g~g~~F~~G~Dl~~~~~~------~~~ 72 (229)
T PRK06213 5 VSYTLEDGVATITLDDG---KVNALSPAMIDALNAALDQAE--DDRA-VVVITGQPGIFSGGFDLKVMTSG------AQA 72 (229)
T ss_pred EEEEecCCEEEEEeCCC---CCCCCCHHHHHHHHHHHHHhh--ccCc-EEEEeCCCCceEcCcCHHHHhcc------hHh
Confidence 67888999999999998 789999999999999999988 5678 99999999999999999987541 122
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
...+...+.+++.++.++||||||+|||+|+|+|++|+++||+||+++++++|++||+++|+.+|.++..++++++| ..
T Consensus 73 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g-~~ 151 (229)
T PRK06213 73 AIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLT-PS 151 (229)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcC-HH
Confidence 33455667788999999999999999999999999999999999999875789999999999556666678899999 89
Q ss_pred HHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhcc
Q 026127 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLGL 232 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~~ 232 (243)
.+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++......++.
T Consensus 152 ~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~~ 219 (229)
T PRK06213 152 AFQRAVINAEMFDPEEAVAAGFLDEVVPP-EQLLARAQAAARELAGLN--MGAHAATKLKVRAAALEAIRA 219 (229)
T ss_pred HHHHHHHcCcccCHHHHHHCCCceeccCh-HHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999997 889999999999999998 999999999999887766653
No 47
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-48 Score=327.31 Aligned_cols=209 Identities=27% Similarity=0.312 Sum_probs=186.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++| +||++|.|+.||+|.|++++..... .. .
T Consensus 5 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~-~~-~-- 77 (249)
T PRK05870 5 VLLDVDDGVALITVNDPD--RRNAVTAEMSAQLRAAVAAAEADPDVH-ALVVTGAGKAFCAGADLTALGAAPG-RP-A-- 77 (249)
T ss_pred EEEEccCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCCeecCcChHHHhcccc-cc-h--
Confidence 567888999999999997 899999999999999999999999999 9999999999999999998865211 11 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhH-HHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA-ALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-~~l~~~~g~~ 160 (243)
......+.+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+ +++++++| +
T Consensus 78 -~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~~G-~ 153 (249)
T PRK05870 78 -EDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPK-ALFDARFQKLGL-HPGGGATWMLQRAVG-P 153 (249)
T ss_pred -HHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCC-CEEeCcccccCc-CCCCcceeeHHhhhC-H
Confidence 222344556778899999999999999999999999999999999988 899999999999 687764 68999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
.++++++++|++++|+||+++||||+|+ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 154 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv---~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~ 214 (249)
T PRK05870 154 QVARAALLFGMRFDAEAAVRHGLALMVA---DDPVAAALELAAGPAAAP--RELVLATKASMRATA 214 (249)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCHHHHH---hhHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999 369999999999999998 999999999998653
No 48
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.4e-48 Score=332.39 Aligned_cols=215 Identities=20% Similarity=0.231 Sum_probs=188.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCc-----
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRT----- 76 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~----- 76 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +|||+|.|++||+|.|++++.......
T Consensus 6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (296)
T PRK08260 6 IRYDVADGIATITLNRPD--KLNAFTVTMARELIEAFDAADADDAVR-AVIVTGAGRAFCAGADLSAGGNTFDLDAPRTP 82 (296)
T ss_pred EEEeeeCCEEEEEeCCCc--ccCCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCCeecCcChHHhhhcccccccccc
Confidence 567889999999999997 899999999999999999999999999 999999999999999999864310000
Q ss_pred -------chHHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh
Q 026127 77 -------GARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF 149 (243)
Q Consensus 77 -------~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g 149 (243)
........+.+.+.+++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~g 160 (296)
T PRK08260 83 VEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTA-ARFGFVFGRRGI-VPEAA 160 (296)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCC-CEEecchhhcCc-CCCcc
Confidence 001111233444567888999999999999999999999999999999999998 899999999999 78877
Q ss_pred H-HHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC-CCChhHHHHHHHHHhHH
Q 026127 150 A-ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR-KWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 150 ~-~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~-~~~~~a~~~~k~~l~~~ 225 (243)
+ +++++++| ..++++++++|++++|+||+++|||++|+|+ +++.+++.+++++++.+ + +.++..+|+.++..
T Consensus 161 ~~~~l~r~vG-~~~A~~llltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~i~~~~~--~~a~~~~K~~l~~~ 234 (296)
T PRK08260 161 SSWFLPRLVG-LQTALEWVYSGRVFDAQEALDGGLVRSVHPP-DELLPAARALAREIADNTS--PVSVALTRQMMWRM 234 (296)
T ss_pred hhhhHHHhhC-HHHHHHHHHcCCccCHHHHHHCCCceeecCH-HHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhc
Confidence 4 68999999 9999999999999999999999999999998 89999999999999985 6 88999999999764
No 49
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=4.3e-48 Score=327.10 Aligned_cols=208 Identities=21% Similarity=0.345 Sum_probs=185.0
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+|||| +.|++|.+|+.+|.+++++++.|++|| +||+||.| ++||+|.|++++..... . ..
T Consensus 5 i~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~~F~aG~Dl~~~~~~~~--~-~~ 77 (261)
T PRK03580 5 LHTTRNGSILEITLDRP---KANAIDAKTSFAMGEVFLNFRDDPELR-VAIITGAGEKFFSAGWDLKAAAEGEA--P-DA 77 (261)
T ss_pred EEEEEECCEEEEEECCc---cccCCCHHHHHHHHHHHHHHHhCCCcE-EEEEEeCCCCceecccCHHHHhccCc--c-hh
Confidence 56788999999999999 669999999999999999999999999 99999998 79999999998754211 0 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
.+......++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 78 ---~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~vg- 151 (261)
T PRK03580 78 ---DFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADN-ASFALPEAKLGI-VPDSGGVLRLPKRLP- 151 (261)
T ss_pred ---hhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCC-CEEeCcccccCc-CCCccHHHHHHHHhC-
Confidence 11112244677899999999999999999999999999999999988 899999999999 67776 569999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
...+++++++|++++|+||+++|||++|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 152 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 214 (261)
T PRK03580 152 PAIANEMVMTGRRMDAEEALRWGIVNRVVPQ-AELMDRARELAQQLVNSA--PLAIAALKEIYRET 214 (261)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCCcEecCH-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 8999999999999999999999999999997 899999999999999998 99999999999754
No 50
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.2e-48 Score=326.83 Aligned_cols=207 Identities=22% Similarity=0.300 Sum_probs=182.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||++|.| ++||+|.|++++..... . ..
T Consensus 6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~~F~aG~Dl~~~~~~~~-~--~~ 79 (259)
T PRK06494 6 STVERKGHVTIVTLNRPE--VMNALHLDAHFELEEVFDDFAADPEQW-VAIVTGAGDKAFSAGNDLKEQAAGGK-R--GW 79 (259)
T ss_pred eEEEeECCEEEEEEcCcc--ccCCCCHHHHHHHHHHHHHHhhCCCcE-EEEEEcCCCCceeccccHHhHhhcCc-c--hh
Confidence 567889999999999996 789999999999999999999999999 99999998 79999999998754211 1 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
. ...+..+ ..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 80 ~----~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg- 151 (259)
T PRK06494 80 P----ESGFGGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAEN-ATFALPEPRVGL-AALAGGLHRLPRQIG- 151 (259)
T ss_pred h----hHHHHHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCC-CEEeCcccccCC-CCCchHHHHHHHHcC-
Confidence 1 1122233 3446899999999999999999999999999999988 899999999999 67766 679999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
...+++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 152 ~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 214 (259)
T PRK06494 152 LKRAMGMILTGRRVTAREGLELGFVNEVVPA-GELLAAAERWADDILACS--PLSIRASKQAVYRG 214 (259)
T ss_pred HHHHHHHHHcCCcCCHHHHHHcCCCcEecCH-hHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 889999999999999998 89999999998764
No 51
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.3e-48 Score=324.83 Aligned_cols=206 Identities=21% Similarity=0.275 Sum_probs=183.2
Q ss_pred eeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHH
Q 026127 4 LEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLH 83 (243)
Q Consensus 4 ~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 83 (243)
.+++++|++|+|||| +.|++|.+|+.+|.+++++++.|++|| +||++|.|++||+|.|++++... +. .....
T Consensus 6 ~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~G~~F~aG~Dl~~~~~~---~~-~~~~~ 77 (249)
T PRK07938 6 TTPEPGIAEVTVDYP---PVNALPSAGWFALADAITAAGADPDTR-VVVLRAEGRGFNAGVDIKELQAT---PG-FTALI 77 (249)
T ss_pred cccCCCEEEEEECCC---CcccCCHHHHHHHHHHHHHhhcCCCeE-EEEEECCCCceecCcCHHHHhhc---cc-hhHHH
Confidence 345789999999999 569999999999999999999999999 99999999999999999987542 11 12222
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHH
Q 026127 84 YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATAR 163 (243)
Q Consensus 84 ~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a 163 (243)
.....+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ + +++.++++++| ...+
T Consensus 78 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~-a~f~~pe~~~G~-~--g~~~~l~~~vg-~~~a 152 (249)
T PRK07938 78 DANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDD-ATFGLPEVDRGA-L--GAATHLQRLVP-QHLM 152 (249)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCC-CEeeCccceecC-c--hhHHHHHHhcC-HHHH
Confidence 23345567888999999999999999999999999999999999988 899999999999 4 34568999999 9999
Q ss_pred HHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 164 RDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 164 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
++++++|++++|+||+++|||++|+|+ +++++++.+++++++..| +.++..+|+.++..
T Consensus 153 ~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 211 (249)
T PRK07938 153 RALFFTAATITAAELHHFGSVEEVVPR-DQLDEAALEVARKIAAKD--TRVIRAAKEALNGI 211 (249)
T ss_pred HHHHHhCCcCCHHHHHHCCCccEEeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 999999999999999999999999997 899999999999999998 99999999999754
No 52
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=1.1e-47 Score=326.71 Aligned_cols=218 Identities=18% Similarity=0.295 Sum_probs=190.5
Q ss_pred ceeeE-eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC--CcccCCCChhhHHhcCCCcch
Q 026127 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG--KFFSNGFDLAWAQAAGSRTGA 78 (243)
Q Consensus 2 ~~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g--~~F~~G~Dl~~~~~~~~~~~~ 78 (243)
+.+++ +++|++||||+| +.|++|.+|+.+|.++++++++|+++| +||+||.| ++||+|.|++++.... ..
T Consensus 13 i~~~~~~~~Va~itlnr~---~~Nal~~~~~~eL~~al~~~~~d~~vr-~vVltg~g~~~~FcaG~Dl~~~~~~~--~~- 85 (278)
T PLN03214 13 VRVDRRPGGIAVVWLAKE---PVNSMTLAMWRSLDDALTALENDPTVR-GVVFASGLRRDVFTAGNDIAELYAPK--TS- 85 (278)
T ss_pred eEEEEcCCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHcCCCce-EEEEeCCCCCCcccCccCHHHHhccc--cc-
Confidence 56777 689999999998 789999999999999999999999999 99999987 7999999999875311 11
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHh
Q 026127 79 RERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~ 157 (243)
......+.....+++.+|.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+++|+++ ++++++++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~lGl~~p~~~~~~~l~~~~ 164 (278)
T PLN03214 86 AARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTE-GTMGLNEVALGIPVPKFWARLFMGRVI 164 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCC-CEecCcHHHhCCCCCChhHHHHHHHhc
Confidence 1222233344466788999999999999999999999999999999999988 899999999999447665 57999999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
| ..++++++++|+.|+++||+++||||+|+|+ +++.+.+.+++++++..| +.++..+|+.++......++
T Consensus 165 G-~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~~~~l~ 234 (278)
T PLN03214 165 D-RKVAESLLLRGRLVRPAEAKQLGLIDEVVPA-AALMEAAASAMERALKLP--SAARAATKALLREEFSAAWE 234 (278)
T ss_pred C-HHHHHHHHHcCCccCHHHHHHcCCCcEecCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhHHHHHH
Confidence 9 9999999999999999999999999999998 899999999999999998 89999999999876554443
No 53
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.7e-48 Score=324.88 Aligned_cols=209 Identities=23% Similarity=0.301 Sum_probs=186.8
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|||||| +.|++|.+|+.+|.++++++++|+++| +||++|.|++||+|.|++++..... . ...
T Consensus 6 i~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~-~--~~~ 78 (257)
T PRK06495 6 LKLEVSDHVAVVTLDNP---PVNALSRELRDELIAVFDEISERPDVR-VVVLTGAGKVFCAGADLKGRPDVIK-G--PGD 78 (257)
T ss_pred EEEEeeCCEEEEEECCC---ccccCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCCcccCcCHHhHhhccC-C--chh
Confidence 46788899999999999 569999999999999999999999999 9999999999999999998754211 1 122
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
...+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ . ++..++++++| ..
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~--~~~~~l~~~~g-~~ 153 (257)
T PRK06495 79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASEN-AVFGLPEIDVGL-A--GGGKHAMRLFG-HS 153 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCC-CEeeChhhccCc-c--ccHHHHHHHhC-HH
Confidence 2334455677888999999999999999999999999999999999988 899999999999 4 34567999999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
.+++|+++|++++|+||+++|||++|+|+ +++.+.+.+++++++..| +.++..+|+.++..
T Consensus 154 ~a~~lll~g~~~~a~eA~~~GLv~~vv~~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 214 (257)
T PRK06495 154 LTRRMMLTGYRVPAAELYRRGVIEACLPP-EELMPEAMEIAREIASKS--PLATRLAKDALNTI 214 (257)
T ss_pred HHHHHHHcCCeeCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 889999999999999998 99999999999764
No 54
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=7.5e-48 Score=327.43 Aligned_cols=211 Identities=19% Similarity=0.324 Sum_probs=185.7
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|| +||++|.| ++||+|.|++++..... .. ..
T Consensus 15 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~~~-~~-~~ 89 (273)
T PRK07396 15 ILYKSADGIAKITINRPE--VRNAFRPKTVKEMIDAFADARDDDNIG-VIILTGAGDKAFCSGGDQKVRGYGGY-VD-DD 89 (273)
T ss_pred eEEEecCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEEeCCCCceEeCcChhhhhcccc-cc-hh
Confidence 567888999999999997 889999999999999999999999999 99999998 69999999998643110 00 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+ ...+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|+++ +.++++++|
T Consensus 90 ~~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~~~~~~l~~~vG- 164 (273)
T PRK07396 90 GVPRL--NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADN-AIFGQTGPKVGS-FDGGYGASYLARIVG- 164 (273)
T ss_pred hhhhh--HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCC-cEEecccccccc-cCCchHHHHHHHHhh-
Confidence 11111 2345777899999999999999999999999999999999998 899999999999 67664 678999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
...+++++++|+.++|+||+++||||+|+|+ +++.+++.++|++++..| +.++..+|+.++..
T Consensus 165 ~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 227 (273)
T PRK07396 165 QKKAREIWFLCRQYDAQEALDMGLVNTVVPL-ADLEKETVRWCREMLQNS--PMALRCLKAALNAD 227 (273)
T ss_pred HHHHHHHHHhCCCcCHHHHHHcCCcCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 8999999999999999999999999999997 899999999999999998 99999999998764
No 55
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=1e-47 Score=322.71 Aligned_cols=205 Identities=22% Similarity=0.348 Sum_probs=180.8
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++||||+| +.|++|.+|+.+|.++++++++|+++| +||+||.|++||+|.|++++.. . .
T Consensus 3 v~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~~~~vr-~vVl~g~g~~FcaG~Dl~~~~~----~---~- 70 (251)
T TIGR03189 3 VWLERDGKLLRLRLARP---KANIVDAAMIAALSAALGEHLEDSALR-AVLLDAEGPHFSFGASVAEHMP----D---Q- 70 (251)
T ss_pred EEEEeeCCEEEEEeCCC---CcCCCCHHHHHHHHHHHHHHHcCCCce-EEEEECCCCceecCcChhhhCc----h---h-
Confidence 46788899999999999 569999999999999999999999999 9999999999999999997532 1 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
.......+.+++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++++.++++++| ..
T Consensus 71 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~~~~~l~~~vg-~~ 147 (251)
T TIGR03189 71 CAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPD-AKLGQPEIVLGV-FAPAASCLLPERMG-RV 147 (251)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCC-CEEeCchhhcCC-CCCchHHHHHHHhC-HH
Confidence 1123344567888999999999999999999999999999999999998 899999999999 57666789999999 89
Q ss_pred HHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHH-HHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRL-AKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~-a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
.+++++++|++++|+||+++|||++|+++ ++ +.+.++ +++++..| +.++..+|+.++...
T Consensus 148 ~a~~l~ltg~~~~a~eA~~~Glv~~v~~~-~~--~~a~~~~a~~la~~~--p~a~~~~K~~l~~~~ 208 (251)
T TIGR03189 148 AAEDLLYSGRSIDGAEGARIGLANAVAED-PE--NAALAWFDEHPAKLS--ASSLRFAVRAARLGM 208 (251)
T ss_pred HHHHHHHcCCCCCHHHHHHCCCcceecCc-HH--HHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence 99999999999999999999999999986 33 456666 68999998 889999999987654
No 56
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=9.5e-48 Score=324.46 Aligned_cols=213 Identities=28% Similarity=0.403 Sum_probs=190.9
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|++||+|+|++++.. .. . ...
T Consensus 7 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vvltg~g~~FsaG~Dl~~~~~-~~-~--~~~ 79 (257)
T COG1024 7 ILVEREDGIAVITLNRPE--KLNALNLEMLDELAEALDEAEADPDVR-VVVLTGAGKAFSAGADLKELLS-PE-D--GNA 79 (257)
T ss_pred eEEEeeCCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCceecccCHHHHhc-cc-c--hhH
Confidence 466777889999999997 889999999999999999999999999 9999999999999999999874 11 1 122
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+....+.++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| +.++++++| .
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~-a~f~~pe~~iGl-~Pg~g~~~~l~r~~G-~ 156 (257)
T COG1024 80 AENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAED-AKFGLPEVNLGL-LPGDGGTQRLPRLLG-R 156 (257)
T ss_pred HHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCC-cEecCccccccc-CCCCcHHHHHHHhcC-H
Confidence 2256677788999999999999999999999999999999999999988 899999999999 78644 679999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
..++++++||+.++++||+++|||++++++.+++.+.+.+++++++. | +.++..+|+.++....
T Consensus 157 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~--~~a~~~~k~~~~~~~~ 220 (257)
T COG1024 157 GRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-P--PLALAATKRLVRAALE 220 (257)
T ss_pred HHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-C--HHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999757999999999999998 5 8899999999876643
No 57
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=1.1e-47 Score=324.32 Aligned_cols=207 Identities=16% Similarity=0.317 Sum_probs=185.7
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC--CCcccCCCChhhHHhcCCCcchH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH--GKFFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~--g~~F~~G~Dl~~~~~~~~~~~~~ 79 (243)
+.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|+ +| +||+||. |++||+|.|++++..... . .
T Consensus 6 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~-v~-~vvltg~~~~~~FcaG~Dl~~~~~~~~--~-~ 78 (261)
T PRK11423 6 VNVVTINKIATITFNNPA--KRNALSKVLIDDLMQALSDLNRPE-IR-VVILRAPSGSKVWSAGHDIHELPSGGR--D-P 78 (261)
T ss_pred eEEEeECCEEEEEEcCcc--ccCCCCHHHHHHHHHHHHHHhcCC-ce-EEEEECCCCCCeeECCcCHHHHhhccc--c-H
Confidence 577889999999999997 899999999999999999999887 99 9999985 389999999998754211 1 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhC
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g 158 (243)
..+...+.+++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 79 ---~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~~~~g~~~~l~~~vg 153 (261)
T PRK11423 79 ---LSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAAST-STFAMTPANLGV-PYNLSGILNFTNDAG 153 (261)
T ss_pred ---HHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCC-CEecCchhhcCC-CCCccHHHHHHHHhH
Confidence 123445677889999999999999999999999999999999999988 899999999999 56654 679999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCP 224 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~ 224 (243)
...+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..+ +.++..+|+.++.
T Consensus 154 -~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~~~~ 215 (261)
T PRK11423 154 -FHIVKEMFFTASPITAQRALAVGILNHVVEV-EELEDFTLQMAHHISEKA--PLAIAVIKEQLRV 215 (261)
T ss_pred -HHHHHHHHHcCCCcCHHHHHHcCCcCcccCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHh
Confidence 9999999999999999999999999999997 899999999999999998 8999999999874
No 58
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.4e-48 Score=327.65 Aligned_cols=215 Identities=25% Similarity=0.325 Sum_probs=186.6
Q ss_pred ceeeEeC-cEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcch-H
Q 026127 2 CTLEKHG-DVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGA-R 79 (243)
Q Consensus 2 ~~~~~~~-~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~-~ 79 (243)
+.+++++ +|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||++|.|++||+|.|++++......... .
T Consensus 7 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 83 (272)
T PRK06210 7 VLYEVADSGVAVITLNRPD--RLNAWTPVMEAEVYAAMDRAEADPAVR-VIVLTGAGRGFCAGADMGELQTIDPSDGRRD 83 (272)
T ss_pred EEEEECCCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHhccCCCee-EEEEECCCCCcccccCHHHHhccCccccccc
Confidence 5678888 99999999997 899999999999999999999999999 99999999999999999987542110000 0
Q ss_pred H----HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHH
Q 026127 80 E----RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFR 154 (243)
Q Consensus 80 ~----~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~ 154 (243)
. ........+++++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~ 161 (272)
T PRK06210 84 TDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADG-AKFTTAFARRGL-IAEHGISWILP 161 (272)
T ss_pred ccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCC-CEEechHHhcCC-CCCCchhhhhH
Confidence 0 00111112456678899999999999999999999999999999999998 899999999999 78877 46899
Q ss_pred HHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC-CCChhHHHHHHHHHhHH
Q 026127 155 AKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR-KWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 155 ~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~-~~~~~a~~~~k~~l~~~ 225 (243)
+++| ..++++|+++|++++|+||+++||||+|+|+ +++.+++.+++++++.. + +.++..+|+.++..
T Consensus 162 ~~ig-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~i~~~~~--p~a~~~~K~~l~~~ 229 (272)
T PRK06210 162 RLVG-HANALDLLLSARTFYAEEALRLGLVNRVVPP-DELMERTLAYAEDLARNVS--PASMAVIKRQLYED 229 (272)
T ss_pred hhhC-HHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhc
Confidence 9999 9999999999999999999999999999998 88999999999999985 6 89999999999765
No 59
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-47 Score=326.99 Aligned_cols=216 Identities=21% Similarity=0.335 Sum_probs=187.7
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCC-C-----
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGS-R----- 75 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~-~----- 75 (243)
+.++++++|++|+||+|+ +.|++|.+|+.+|.+++++++.|+++| +|||||.|++||+|.|++++..... .
T Consensus 6 v~~~~~~~Va~ItlnrP~--~~Nal~~~~~~eL~~~l~~~~~d~~vr-vvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~ 82 (288)
T PRK08290 6 VRYEVAGRIARITLNRPE--ARNAQNRQMLYELDAAFRRAEADDAVR-VIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQ 82 (288)
T ss_pred EEEEeeCCEEEEEecCcc--ccCCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCccccCCCcccccccccccccccc
Confidence 678889999999999997 789999999999999999999999999 9999999999999999997632100 0
Q ss_pred -----------cchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcC
Q 026127 76 -----------TGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLT 144 (243)
Q Consensus 76 -----------~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~ 144 (243)
.............+.+++..|.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~-a~f~~pe~~lGl- 160 (288)
T PRK08290 83 HPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDD-AFFSDPVVRMGI- 160 (288)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCC-CEecCcccccCc-
Confidence 0001111222344567788899999999999999999999999999999999988 899999999998
Q ss_pred CChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 026127 145 LPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCP 224 (243)
Q Consensus 145 ~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~ 224 (243)
|+.+..++++++| ..++++|+++|+.++|+||+++|||++|+++ +++.+++.+++++++..| +.++..+|+.++.
T Consensus 161 -~~~~~~~l~~~iG-~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~ 235 (288)
T PRK08290 161 -PGVEYFAHPWELG-PRKAKELLFTGDRLTADEAHRLGMVNRVVPR-DELEAETLELARRIAAMP--PFGLRLTKRAVNQ 235 (288)
T ss_pred -CcchHHHHHHHhh-HHHHHHHHHcCCCCCHHHHHHCCCccEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHH
Confidence 4455667899999 9999999999999999999999999999998 889999999999999998 8999999999986
Q ss_pred HHH
Q 026127 225 DLC 227 (243)
Q Consensus 225 ~~~ 227 (243)
...
T Consensus 236 ~~~ 238 (288)
T PRK08290 236 TLD 238 (288)
T ss_pred HHh
Confidence 543
No 60
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-47 Score=320.13 Aligned_cols=206 Identities=20% Similarity=0.264 Sum_probs=183.8
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
|+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++|| +||++|.|+.||+|.|++++... .
T Consensus 1 ~i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~a~~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~------~- 70 (248)
T PRK06072 1 MIKVESREGYAIVTMSRPD--KLNALNLEMRNEFISKLKQINADPKIR-VVIVTGEGRAFCVGADLSEFAPD------F- 70 (248)
T ss_pred CeEEEEECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCCcccCcCHHHHhhh------h-
Confidence 7899999999999999997 899999999999999999999999999 99999999999999999987531 0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
...+.+.+..++..+.++||||||+|||+|+|+|++|+++||+||++++ ++|++||.++|+ +|++| +.++++++|
T Consensus 71 -~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~~~~~~Gl-~p~~g~~~~l~~~~g- 146 (248)
T PRK06072 71 -AIDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRD-VKFVTAFQRLGL-ASDTGVAYFLLKLTG- 146 (248)
T ss_pred -HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-CEEecchhhcCc-CCCchHHHHHHHHhh-
Confidence 1223445677888999999999999999999999999999999999998 889999999999 67766 568999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
. ++++++++|++++|+||+++||||++ +++.+++.++|++++..| +.++..+|+.++....
T Consensus 147 ~-~a~~lll~g~~~~a~eA~~~Glv~~~----~~~~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~ 207 (248)
T PRK06072 147 Q-RFYEILVLGGEFTAEEAERWGLLKIS----EDPLSDAEEMANRISNGP--FQSYIAAKRMINLVLY 207 (248)
T ss_pred H-HHHHHHHhCCccCHHHHHHCCCcccc----chHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhh
Confidence 6 78999999999999999999999953 246789999999999998 8999999999986543
No 61
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.2e-47 Score=321.46 Aligned_cols=213 Identities=23% Similarity=0.346 Sum_probs=186.5
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchH--
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGAR-- 79 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~-- 79 (243)
+.++++++|++|+||||+ +.|++|.+|+++|.+++++++.|+++| +||++|.|++||+|.|++++..... ....
T Consensus 5 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~ 80 (262)
T PRK07509 5 VSVTIEDGIADVRLNRPD--KMNALDFAMFEELIATIKRLKKDRGIR-AVILSGEGGAFCAGLDVKSVASSPG-NAVKLL 80 (262)
T ss_pred EEEEeeCCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhhCCCCe-EEEEECCCCCcCCCcCHHHHhcccc-hhhhhH
Confidence 578889999999999997 899999999999999999999999999 9999999999999999998764211 1001
Q ss_pred -HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHh
Q 026127 80 -ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKV 157 (243)
Q Consensus 80 -~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~ 157 (243)
.........+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~~ 158 (262)
T PRK07509 81 FKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPD-TKLSIMEAKWGL-VPDMAGTVSLRGLV 158 (262)
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCC-CEeecchhccCC-CCCchHHHHHHHHh
Confidence 111122234566778889999999999999999999999999999999998 899999999999 78776 57999999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
| ...+++++++|++++|+||+++||||+|+++ +.+++.+++++++..| +.++..+|+.++...
T Consensus 159 g-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~---~~~~a~~~a~~l~~~~--~~~~~~~K~~l~~~~ 221 (262)
T PRK07509 159 R-KDVARELTYTARVFSAEEALELGLVTHVSDD---PLAAALALAREIAQRS--PDAIAAAKRLINRSW 221 (262)
T ss_pred C-HHHHHHHHHcCCCcCHHHHHHcCChhhhhch---HHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 9 9999999999999999999999999999954 6789999999999998 899999999997654
No 62
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-46 Score=324.30 Aligned_cols=215 Identities=22% Similarity=0.292 Sum_probs=186.4
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCc--ch-
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRT--GA- 78 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~--~~- 78 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++|| +|||+|.|++||+|.|++++....... ..
T Consensus 12 v~~e~~~~V~~Itlnrp~--~~Nal~~~m~~eL~~al~~~~~d~~vr-vvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~ 88 (302)
T PRK08272 12 MTYEVTGRIARITLNRPE--KGNAITADTPLELRAAVERADLDPGVH-VILVSGAGKGFCAGYDLSAYAEGSSSGGGGGA 88 (302)
T ss_pred EEEEeECCEEEEEecCcc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEEcCCCCcccCcCHHHHhhcccccccccc
Confidence 567888999999999997 899999999999999999999999999 999999999999999999876421100 00
Q ss_pred ---------------HH--HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeecccccc
Q 026127 79 ---------------RE--RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDI 141 (243)
Q Consensus 79 ---------------~~--~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~ 141 (243)
.. ........+++++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~-a~f~~pe~~~ 167 (302)
T PRK08272 89 YPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADD-AKIGYPPTRV 167 (302)
T ss_pred cccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCC-CEecCcchhc
Confidence 00 00123445667888999999999999999999999999999999999998 8999999997
Q ss_pred CcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 026127 142 GLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKS 221 (243)
Q Consensus 142 Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~ 221 (243)
|. +|.. ..+.+++| ..++++++++|++++|+||+++|||++|+|+ +++.+++.++|++|+..| +.++...|+.
T Consensus 168 gg-~~~~--~~~~~~vG-~~~A~~llltG~~i~a~eA~~~GLv~~vv~~-~~l~~~a~~la~~ia~~~--~~a~~~~K~~ 240 (302)
T PRK08272 168 WG-VPAT--GMWAYRLG-PQRAKRLLFTGDCITGAQAAEWGLAVEAVPP-EELDERTERLVERIAAVP--VNQLAMVKLA 240 (302)
T ss_pred cc-CChH--HHHHHHhh-HHHHHHHHHcCCccCHHHHHHcCCCceecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHH
Confidence 55 3433 35778999 9999999999999999999999999999997 899999999999999998 9999999999
Q ss_pred HhHHHH
Q 026127 222 LCPDLC 227 (243)
Q Consensus 222 l~~~~~ 227 (243)
++..+.
T Consensus 241 l~~~~~ 246 (302)
T PRK08272 241 VNSALL 246 (302)
T ss_pred HHHHHH
Confidence 987654
No 63
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.9e-47 Score=320.57 Aligned_cols=212 Identities=25% Similarity=0.354 Sum_probs=185.2
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+|+.+|.++++.++.|+++| +||++|.|++||+|.|++++..... ...+.
T Consensus 8 i~~~~~~~v~~i~lnrp~--~~Nal~~~~~~el~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~--~~~~~ 82 (260)
T PRK07827 8 VRYAVDGGVATLTLDSPH--NRNALSARLVAQLHDGLRAAAADPAVR-AVVLTHTGGTFCAGADLSEAGGGGG--DPYDA 82 (260)
T ss_pred eEEEeeCCEEEEEEcCcc--ccCCCCHHHHHHHHHHHHHHhcCCCee-EEEEEcCCCCccCCcChHHHhhccc--CchhH
Confidence 567889999999999997 899999999999999999999999999 9999999999999999998754211 11222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhH-HHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA-ALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-~~l~~~~g~~ 160 (243)
...+...+.+++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+ .++++. + .
T Consensus 83 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~l-~-~ 158 (260)
T PRK07827 83 AVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPE-STFALTEARIGV-APAIISLTLLPRL-S-P 158 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCC-CEEeCcccccCC-CCCcccchhHHhh-h-H
Confidence 2234556778899999999999999999999999999999999999988 899999999999 788875 466654 5 5
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
..+++++++|++++|+||+++|||+++++ ++.+++.+++++++..| +.++..+|+.++..+.
T Consensus 159 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~---~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~ 220 (260)
T PRK07827 159 RAAARYYLTGEKFGAAEAARIGLVTAAAD---DVDAAVAALLADLRRGS--PQGLAESKALTTAAVL 220 (260)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCcccchH---HHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhc
Confidence 68899999999999999999999999974 48899999999999998 8999999999987644
No 64
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-46 Score=314.87 Aligned_cols=200 Identities=23% Similarity=0.357 Sum_probs=179.2
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
|+.++++++|++||||||+ +.|++|.+|+.+|.+++++++.+ ++| +||+||.|++||+|.|+++... .
T Consensus 1 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~~-~vr-~vvl~g~g~~F~aG~Dl~~~~~-------~- 68 (243)
T PRK07854 1 MIGVTRDGQVLTIELQRPE--RRNALNAELCEELREAVRKAVDE-SAR-AIVLTGQGTVFCAGADLSGDVY-------A- 68 (243)
T ss_pred CceEEEeCCEEEEEeCCCc--cccCCCHHHHHHHHHHHHHHhcC-Cce-EEEEECCCCceecccCCccchh-------H-
Confidence 6889999999999999997 89999999999999999999865 899 9999999999999999985211 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
..+...+.+++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 69 --~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~~G- 143 (243)
T PRK07854 69 --DDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPE-AYFQFPVAKYGI-ALDNWTIRRLSSLVG- 143 (243)
T ss_pred --HHHHHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCC-CEEecccccccc-CCCccHHHHHHHHhC-
Confidence 123345667888999999999999999999999999999999999988 899999999999 67766 568999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCP 224 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~ 224 (243)
...+++++++|++++|+||+++|||++|++. +++.+++++++..| +.++..+|+.++.
T Consensus 144 ~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~-----~~a~~~a~~l~~~~--~~a~~~~K~~l~~ 201 (243)
T PRK07854 144 GGRARAMLLGAEKLTAEQALATGMANRIGTL-----ADAQAWAAEIAGLA--PLALQHAKRVLND 201 (243)
T ss_pred HHHHHHHHHcCCCcCHHHHHHCCCcccccCH-----HHHHHHHHHHHhCC--HHHHHHHHHHHHc
Confidence 9999999999999999999999999999752 27899999999998 8999999999874
No 65
>PLN02921 naphthoate synthase
Probab=100.00 E-value=1.8e-46 Score=324.81 Aligned_cols=211 Identities=20% Similarity=0.325 Sum_probs=184.8
Q ss_pred ceeeE--eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcch
Q 026127 2 CTLEK--HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGA 78 (243)
Q Consensus 2 ~~~~~--~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~ 78 (243)
+.+++ +++|++|+||||+ +.|++|.+|+.+|.++++.++.|++++ +||++|.| ++||+|+|++++..... ..
T Consensus 67 i~~~~~~~~~Va~ItLnrP~--~~Nal~~~~~~eL~~al~~~~~d~~vr-vVVLtg~G~k~FcaG~Dl~~~~~~~~-~~- 141 (327)
T PLN02921 67 IIYEKAVGEGIAKITINRPE--RRNAFRPRTVKELQRAFNDARDDSSVG-VIILTGKGTKAFCSGGDQAVRGKDGY-VG- 141 (327)
T ss_pred EEEEEecCCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHhhCCCce-EEEEecCCCCceecCcChhhhhcccc-cc-
Confidence 45666 5899999999997 889999999999999999999999999 99999999 89999999998643111 10
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChh-hHHHHHHHh
Q 026127 79 RERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDY-FAALFRAKV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~-g~~~l~~~~ 157 (243)
......+ ...+++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||.++|+ +|++ ++.++++++
T Consensus 142 ~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~-A~f~~pe~~~Gl-~p~~gg~~~L~rli 217 (327)
T PLN02921 142 PDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADN-AVFGQTGPKVGS-FDAGYGSSIMARLV 217 (327)
T ss_pred hhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCC-CEEeCcccccCC-CCCccHHHHHHHHh
Confidence 1111111 1345778899999999999999999999999999999999988 899999999999 6665 467899999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
| ...+++++++|+.++|+||+++|||++|+|. +++.+++.+++++|+..| +.++..+|+.++..
T Consensus 218 G-~~~A~ellltG~~~~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--p~al~~~K~~l~~~ 281 (327)
T PLN02921 218 G-QKKAREMWFLARFYTASEALKMGLVNTVVPL-DELEGETVKWCREILRNS--PTAIRVLKSALNAA 281 (327)
T ss_pred C-HHHHHHHHHcCCcCCHHHHHHCCCceEEeCH-HHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHh
Confidence 9 9999999999999999999999999999997 899999999999999998 99999999999764
No 66
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.5e-46 Score=314.37 Aligned_cols=207 Identities=16% Similarity=0.234 Sum_probs=180.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+|+.+|.+++++++ +++| +||++|.|++||+|+|++++..... . ...
T Consensus 6 i~~~~~~~i~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~--~~vr-~vVl~g~g~~FsaG~Dl~~~~~~~~-~--~~~ 77 (255)
T PRK07112 6 IRVRQQGDVCFLQLHRPE--AQNTINDRLIAECMDVLDRCE--HAAT-IVVLEGLPEVFCFGADFSAIAEKPD-A--GRA 77 (255)
T ss_pred EEEEeeCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHhh--cCce-EEEEEcCCCCcccCcCHHHHhhccc-c--chh
Confidence 567889999999999997 889999999999999999998 4689 9999999999999999998764211 1 111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
.......+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++++.++++++| ..
T Consensus 78 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~~~~~l~~~vg-~~ 154 (255)
T PRK07112 78 DLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADET-APFSLSELLFGL-IPACVLPFLIRRIG-TQ 154 (255)
T ss_pred hhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCC-CEEeCchhhhcc-CcchhhHHHHHHhC-HH
Confidence 1112334567888999999999999999999999999999999999988 899999999999 78877778999999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 026127 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCP 224 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~ 224 (243)
.+++++++|++++|+||+++||||+|+|+ ++ ..+.+++++++..| +.++..+|+.++.
T Consensus 155 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~--~~~~~~a~~l~~~~--p~a~~~~K~~~~~ 212 (255)
T PRK07112 155 KAHYMTLMTQPVTAQQAFSWGLVDAYGAN-SD--TLLRKHLLRLRCLN--KAAVARYKSYAST 212 (255)
T ss_pred HHHHHHHhCCcccHHHHHHcCCCceecCc-HH--HHHHHHHHHHHhCC--HHHHHHHHHHHHH
Confidence 99999999999999999999999999997 33 25788999999998 8999999999874
No 67
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-46 Score=321.32 Aligned_cols=214 Identities=19% Similarity=0.197 Sum_probs=179.1
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhh-HHh---cCCCcc
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAW-AQA---AGSRTG 77 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~-~~~---~~~~~~ 77 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++|| +|||||.|++||+|+|+++ +.. ....+.
T Consensus 7 v~~~~~~~Va~ItLnrP~--~~NAl~~~~~~eL~~al~~~~~d~~vr-vvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~ 83 (298)
T PRK12478 7 LLYTTAGPVATITLNRPE--QLNTIVPPMPDEIEAAIGLAERDQDIK-VIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDG 83 (298)
T ss_pred EEEeccCCEEEEEecCCc--ccCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcccCcCccccccccchhccccc
Confidence 467788999999999997 899999999999999999999999999 9999999999999999985 211 000000
Q ss_pred ---hHHHHH---HHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeecccccc-CcCCChhhH
Q 026127 78 ---ARERLH---YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDI-GLTLPDYFA 150 (243)
Q Consensus 78 ---~~~~~~---~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~-Gl~~p~~g~ 150 (243)
...... ........++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++ |+ +|++ .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-A~f~~pe~~l~G~-~~~~-~ 160 (298)
T PRK12478 84 RWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDD-AVIGTPYSRMWGA-YLTG-M 160 (298)
T ss_pred ccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCC-cEEeccccccccC-Cchh-H
Confidence 001110 00011234567789999999999999999999999999999999998 8999999997 88 4532 2
Q ss_pred HHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 151 ~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
+.+++| ..++++|+++|++++|+||+++|||++|||+ +++.+++.+++++++..| +.+++..|+.++....
T Consensus 161 --~~~~vG-~~~A~~llltg~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~ 231 (298)
T PRK12478 161 --WLYRLS-LAKVKWHSLTGRPLTGVQAAEAELINEAVPF-ERLEARVAEVATELARIP--LSQLQAQKLIVNQAYE 231 (298)
T ss_pred --HHHHhh-HHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHH
Confidence 235799 9999999999999999999999999999998 899999999999999998 9999999999986533
No 68
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=5.7e-46 Score=319.79 Aligned_cols=215 Identities=18% Similarity=0.268 Sum_probs=182.1
Q ss_pred ceeeE--eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-------CcccCCCChhhHHhc
Q 026127 2 CTLEK--HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-------KFFSNGFDLAWAQAA 72 (243)
Q Consensus 2 ~~~~~--~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-------~~F~~G~Dl~~~~~~ 72 (243)
+.+++ +++|++||||||+ +.|++|.+|+.+|.+++++++.|++++ +||++|.| ++||+|+|++++...
T Consensus 25 i~~~~~~~~~va~itlnrP~--~~Nal~~~~~~~l~~al~~~~~d~~vr-vvVltg~g~~~~~~~~~FcaG~Dl~~~~~~ 101 (302)
T PRK08321 25 ITYHRAVDQGTVRIAFDRPE--VRNAFRPHTVDELYRALDHARMSPDVG-CVLLTGNGPSPKDGGWAFCSGGDQRIRGRD 101 (302)
T ss_pred EEEEEecCCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhhCCCcE-EEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence 45666 8899999999997 889999999999999999999999999 99999988 599999999875321
Q ss_pred C----C-CcchHHHHHHH-HHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEe-cCCceeeccccccCcCC
Q 026127 73 G----S-RTGARERLHYM-VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMR-RDKGVLYMSEVDIGLTL 145 (243)
Q Consensus 73 ~----~-~~~~~~~~~~~-~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~-~~~~~f~~pe~~~Gl~~ 145 (243)
. . ........... .....++...+.++||||||+|||+|+|||++|+++||+|||+ ++ ++|++||+++|+ +
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~-a~f~~pe~~~Gl-~ 179 (302)
T PRK08321 102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREH-ARFKQTDADVGS-F 179 (302)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCC-CEEECCcccccc-C
Confidence 0 0 00000000011 1112356778899999999999999999999999999999999 56 899999999999 5
Q ss_pred Chh-hHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 026127 146 PDY-FAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCP 224 (243)
Q Consensus 146 p~~-g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~ 224 (243)
|++ ++.++++++| ...+++++++|++++|+||+++|||++|+|+ +++.+++.+++++|+..| +.+++.+|+.++.
T Consensus 180 p~~~~~~~L~r~vG-~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~ 255 (302)
T PRK08321 180 DGGYGSAYLARQVG-QKFAREIFFLGRTYSAEEAHDMGAVNAVVPH-AELETEALEWAREINGKS--PTAMRMLKYAFNL 255 (302)
T ss_pred CCchHHHHHHHHhC-HHHHHHHHHcCCccCHHHHHHCCCceEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHh
Confidence 554 5678999999 8999999999999999999999999999997 889999999999999998 8999999999865
Q ss_pred H
Q 026127 225 D 225 (243)
Q Consensus 225 ~ 225 (243)
.
T Consensus 256 ~ 256 (302)
T PRK08321 256 T 256 (302)
T ss_pred h
Confidence 3
No 69
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.4e-45 Score=314.01 Aligned_cols=214 Identities=21% Similarity=0.248 Sum_probs=177.0
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHh-----cCCCCeEEEEecC-CCcccCCCChhhHHhcCCC
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKA-----EATPGSALITTSH-GKFFSNGFDLAWAQAAGSR 75 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~-----d~~v~~~vvl~g~-g~~F~~G~Dl~~~~~~~~~ 75 (243)
+.++++++|++|+|| |+ +.|++|.+|+.+|.++++++++ |++|| +||++|. |++||+|.|++++.....
T Consensus 19 i~~e~~~~ia~itl~-p~--~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vr-vVVltg~~gk~FcaG~Dl~~~~~~~~- 93 (287)
T PRK08788 19 VYYEEERNVMWMYMR-AQ--PRPCFNLELLDDIMNLQRAIRQRLDDSGLPVD-FWVLASDVPGVFNLGGDLALFAELIR- 93 (287)
T ss_pred EEEEccCCEEEEEEC-CC--CCCCCCHHHHHHHHHHHHHHHhhccCCCCCeE-EEEEEcCCCCceEeCcCHHHHhhhcc-
Confidence 456778999999996 86 8999999999999999999998 89999 9999999 799999999998753211
Q ss_pred cchHHHHHHHHHHHHHHHHHHh---cCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HH
Q 026127 76 TGARERLHYMVESFRPVVAAMM---DLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AA 151 (243)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~---~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~ 151 (243)
..+......+...+.+.+.++. .+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pev~lGl-~p~~g~~~ 171 (287)
T PRK08788 94 AGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERG-AKMGFPEILFNL-FPGMGAYS 171 (287)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCC-CEeeCchhhhCc-CCCchHHH
Confidence 1111112222222333333333 799999999999999999999999999999988 899999999999 68776 57
Q ss_pred HHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 026127 152 LFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCP 224 (243)
Q Consensus 152 ~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~ 224 (243)
++++++| ..++++++++|+.++|+||+++||||+++|+ +++.+++.+++++++..|..+.++...|+.++.
T Consensus 172 ~l~~~vG-~~~A~ellltG~~l~A~eA~~~GLV~~vv~~-~el~~~a~~~a~~ia~~~~~~~a~k~~~~~~~~ 242 (287)
T PRK08788 172 FLARRVG-PKLAEELILSGKLYTAEELHDMGLVDVLVED-GQGEAAVRTFIRKSKRKLNGWRAMLRARRRVNP 242 (287)
T ss_pred HHHHHhh-HHHHHHHHHcCCCCCHHHHHHCCCCcEecCc-hHHHHHHHHHHHHHhcCccHHHHHHHHHHhhcc
Confidence 8999999 9999999999999999999999999999998 889999999999999764335566666666543
No 70
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=2e-45 Score=324.63 Aligned_cols=211 Identities=16% Similarity=0.167 Sum_probs=183.4
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++||||||+ +.|++|.+|+.+|.++++.++.|++|+ +||++|.|++||+|+|+.++..... ......
T Consensus 39 V~~e~~g~v~~ItLNRP~--~lNALs~~m~~~L~~al~~~~~D~~vr-vVVl~G~GkaFcAGgDl~~l~~~~~-~~~~~~ 114 (401)
T PLN02157 39 VLVEGSGCSRTAILNRPP--ALNALTTHMGYRLQKLYKNWEEDPNIG-FVMMKGSGRAFCAGGDIVSLYHLRK-RGSPDA 114 (401)
T ss_pred eEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHhhCCCCe-EEEEECCCCCccCCcCHHHHHhhcc-ccchHH
Confidence 467889999999999997 899999999999999999999999999 9999999999999999998864221 111122
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+....+.+...|.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus 115 ~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~-a~fa~PE~~iGl-~Pd~G~s~~L~rl~G-~ 191 (401)
T PLN02157 115 IREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDR-TIFATPETIIGF-HPDAGASFNLSHLPG-R 191 (401)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCC-CEEEChhhhcCC-CCCccHHHHHHHhhh-H
Confidence 2334444455778899999999999999999999999999999999998 899999999999 78877 568999998 5
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCP 224 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~ 224 (243)
.+++|++||+.++|+||+++||+++++|+ +++ +.+.+++++++..+ +.++..+|+.++.
T Consensus 192 -~a~~L~LTG~~i~A~eA~~~GLv~~vVp~-~~l-~~~~~~~~~i~~~~--p~av~~~k~~~~~ 250 (401)
T PLN02157 192 -LGEYLGLTGLKLSGAEMLACGLATHYIRS-EEI-PVMEEQLKKLLTDD--PSVVESCLEKCAE 250 (401)
T ss_pred -HHHHHHHcCCcCCHHHHHHcCCceEEeCH-hHH-HHHHHHHHHHHcCC--HHHHHHHHHHHhc
Confidence 68999999999999999999999999998 778 67789999998876 7889999988764
No 71
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=8.6e-46 Score=323.27 Aligned_cols=213 Identities=19% Similarity=0.228 Sum_probs=184.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|| +||+||.| ++||+|.|++++..... .....
T Consensus 5 v~~~~~~~v~~itLnrP~--~~Nal~~~m~~~L~~~l~~~~~d~~vr-vvVltg~g~~~F~aG~Dl~~~~~~~~-~~~~~ 80 (342)
T PRK05617 5 VLAEVEGGVGVITLNRPK--ALNALSLEMIRAIDAALDAWEDDDAVA-AVVIEGAGERGFCAGGDIRALYEAAR-AGDPL 80 (342)
T ss_pred EEEEEECCEEEEEECCCc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEEcCCCCceeCCcCHHHHHhhhc-cCCch
Confidence 577889999999999997 899999999999999999999999999 99999999 99999999998754211 11011
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhH-HHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA-ALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-~~l~~~~g~ 159 (243)
....+.....+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+ .+++++.|
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~-a~f~~pe~~lGl-~P~~g~~~~L~r~~g- 157 (342)
T PRK05617 81 AADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTER-TKMAMPETGIGF-FPDVGGTYFLSRAPG- 157 (342)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCC-CEeeCCccccCc-CCCccceeEehhccc-
Confidence 11123344457888999999999999999999999999999999999988 899999999999 788775 57888755
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHH------------------------------------------
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEA------------------------------------------ 197 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~------------------------------------------ 197 (243)
..+++++++|+.++|+||+++|||++|+|+ +++.+.
T Consensus 158 -~~a~~llltG~~i~A~eA~~~GLv~~vv~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 235 (342)
T PRK05617 158 -ALGTYLALTGARISAADALYAGLADHFVPS-ADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDEC 235 (342)
T ss_pred -HHHHHHHHcCCCCCHHHHHHcCCcceecCH-HHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHH
Confidence 478999999999999999999999999997 778776
Q ss_pred --------------------HHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 198 --------------------SMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 198 --------------------a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
|.+++++|+++| |.++..+|+.++..
T Consensus 236 ~~~~~~~~~~~~l~~~~~~~a~~~a~~i~~~s--p~a~~~~k~~l~~~ 281 (342)
T PRK05617 236 FAGDTVEDIIAALEADGGEFAAKTADTLRSRS--PTSLKVTLEQLRRA 281 (342)
T ss_pred hCCCCHHHHHHHHHhccHHHHHHHHHHHHhCC--cHHHHHHHHHHHHh
Confidence 889999999998 99999999998754
No 72
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=9.3e-45 Score=320.36 Aligned_cols=184 Identities=18% Similarity=0.227 Sum_probs=159.3
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|| +||++|.|++||+|+|++++..... . ...
T Consensus 13 v~~~~~~~v~~ItLnrP~--~~Nal~~~m~~eL~~al~~~~~d~~vr-vvVl~g~g~~FcaG~Dl~~~~~~~~-~--~~~ 86 (379)
T PLN02874 13 VLGEEKGRVRVITLNRPR--QLNVISLSVVSLLAEFLEQWEKDDSVE-LIIIKGAGRAFSAGGDLKMFYDGRE-S--DDS 86 (379)
T ss_pred eEEEEECCEEEEEECCCc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCCccCccCHHHHHhhcc-c--chH
Confidence 567788999999999997 889999999999999999999999999 9999999999999999998754211 1 111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
........+.+..+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 87 ~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~iGl-~p~~g~~~~L~rl~g-~ 163 (379)
T PLN02874 87 CLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEK-TVFATPEASVGF-HTDCGFSYILSRLPG-H 163 (379)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCC-eEEeccccccCc-CCChhHHHHHHhhhH-H
Confidence 1223334455678899999999999999999999999999999999988 899999999999 68776 467888877 5
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAE 196 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~ 196 (243)
.+++|++||++++|+||+++|||++|||+ +++.+
T Consensus 164 -~a~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~ 197 (379)
T PLN02874 164 -LGEYLALTGARLNGKEMVACGLATHFVPS-EKLPE 197 (379)
T ss_pred -HHHHHHHcCCcccHHHHHHcCCccEEeCH-HHHHH
Confidence 68899999999999999999999999997 67765
No 73
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=8.8e-44 Score=306.18 Aligned_cols=206 Identities=15% Similarity=0.166 Sum_probs=180.9
Q ss_pred EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHHHHHHHHHH
Q 026127 10 VFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARERLHYMVES 88 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (243)
+++|+||||+ +.|++|.+|+.+|.+++++++.|++|+ +||+||.| ++||+|.|++++..... .. ......+.+.
T Consensus 38 ~A~ItLNRP~--k~NAls~~ml~eL~~al~~~~~D~dVr-vVVLTG~G~kaFCAG~DLke~~~~~~-~~-~~~~~~~~~~ 112 (360)
T TIGR03200 38 NAWIILDNPK--QYNSYTTDMVKAIILAFRRASSDRDVV-AVVFTAVGDKAFCTGGNTKEYAEYYA-GN-PQEYRQYMRL 112 (360)
T ss_pred EEEEEECCCC--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEEcCCCCcccCCcCHHHHhhhcc-cC-hhHHHHHHHH
Confidence 4559999997 889999999999999999999999999 99999999 79999999998765211 11 2233455666
Q ss_pred HHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCHHHHHHHH
Q 026127 89 FRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSATARRDVL 167 (243)
Q Consensus 89 ~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a~~l~ 167 (243)
+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| ..++++++
T Consensus 113 ~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~-A~Fg~PE~rlGl-~P~~Ggt~rLprlvG-~~rA~~ll 189 (360)
T TIGR03200 113 FNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDL-ANFGQAGPKHGS-APIGGATDFLPLMIG-CEQAMVSG 189 (360)
T ss_pred HHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCC-CEEeCchhccCC-CCCccHHHHHHHhhC-HHHHHHHH
Confidence 778899999999999999999999999999999999999988 899999999999 68776 569999999 89999999
Q ss_pred hcCcCCCHHHHHHcCcchhccCCHhHH------------HHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 026127 168 LRAKKIKGEEALRMGLVEAAYDSEEQV------------AEASMRLAKQLAGRKWAGEVYAEIRKSLCP 224 (243)
Q Consensus 168 l~g~~~~a~eA~~~Glv~~v~~~~~~l------------~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~ 224 (243)
++|++++|+||+++|||++|+|+ +++ ++.+.++++.+...+....+....|.++..
T Consensus 190 ltGe~~sA~EA~~~GLVd~VVp~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 257 (360)
T TIGR03200 190 TLCEPWSAHKAKRLGIIMDVVPA-LKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQ 257 (360)
T ss_pred HhCCcCcHHHHHHcCChheecCc-hhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhc
Confidence 99999999999999999999998 788 888889999999887555578878877765
No 74
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=2.8e-45 Score=291.04 Aligned_cols=218 Identities=21% Similarity=0.320 Sum_probs=196.1
Q ss_pred eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcC--CCcch-----H
Q 026127 7 HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAG--SRTGA-----R 79 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~--~~~~~-----~ 79 (243)
+.-|.++.||||. +.|++|..|+.|+.++++.++.||++| +||++|.|+.||+|+|++.+.... ..+.+ .
T Consensus 29 ~~~V~hv~lnRPs--k~Nal~~~~w~E~~~cf~~l~~dpdcr-~iilsg~GKhFcaGIDl~~~~~~~~~~~~~dd~aR~g 105 (292)
T KOG1681|consen 29 QPFVYHVQLNRPS--KLNALNKVFWREFKECFDSLDRDPDCR-AIILSGAGKHFCAGIDLNDMASDRILQPEGDDVARKG 105 (292)
T ss_pred CCeEEEEEecCcc--hhhhhhHHHHHHHHHHHHhhccCCCce-EEEEecCCcceecccCcchhhhhhccccccchHhhhh
Confidence 4579999999998 999999999999999999999999999 999999999999999988665431 11111 3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhH-HHHHHHhC
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA-ALFRAKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-~~l~~~~g 158 (243)
..+++....+++.+..|.+||||||++|||+|+|+|..|..+||+|||++| ++|+.-|+.+|+ ..+.|+ .+|+..+|
T Consensus 106 ~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqD-AffsvkEVDvgl-aADvGTL~RlpkvVG 183 (292)
T KOG1681|consen 106 RSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQD-AFFSVKEVDVGL-AADVGTLNRLPKVVG 183 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeeccc-ceeeeeeeeeeh-hhchhhHhhhhHHhc
Confidence 456778888999999999999999999999999999999999999999999 899999999999 788886 69999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
....++++.+|++.|+|.||++.|||++|+|+.++++..+..+|+.|+.++ |.+++.+|..+........+
T Consensus 184 n~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KS--pvaVqgTK~~L~ysrehsv~ 254 (292)
T KOG1681|consen 184 NQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKS--PVAVQGTKENLLYSREHSVE 254 (292)
T ss_pred chHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCC--ceeeechHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999999999998 88888888887665544443
No 75
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=1.4e-43 Score=311.93 Aligned_cols=210 Identities=19% Similarity=0.224 Sum_probs=177.4
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++|+ +||++|.|++||+|+|++++..... ......
T Consensus 11 v~~~~~~~i~~ItLnRP~--~lNALs~~m~~~L~~al~~~~~d~~v~-~VVl~G~G~~FcAGgDl~~l~~~~~-~~~~~~ 86 (381)
T PLN02988 11 VLVEEKSSVRILTLNRPK--QLNALSFHMISRLLQLFLAFEEDPSVK-LVILKGHGRAFCAGGDVAAVVRDIE-QGNWRL 86 (381)
T ss_pred eEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCee-EEEEECCCCCcccCcCHHHHHhhhc-ccchhH
Confidence 467788999999999997 889999999999999999999999999 9999999999999999998753211 111111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...++...+.+...|.++|||+||++||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 87 ~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~-a~f~mPE~~iGl-~Pd~G~s~~L~rl~G-~ 163 (381)
T PLN02988 87 GANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATEN-TVFAMPETALGL-FPDVGASYFLSRLPG-F 163 (381)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCC-cEEeChhhhcCc-CCCccHHHHHHHHHH-H
Confidence 1222333344667889999999999999999999999999999999988 899999999999 78887 468888888 5
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHh
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLC 223 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~ 223 (243)
.+++|++||++++|++|+++||+++++|+ +++.+.+.+++ +++..+ +.++..+|+.+.
T Consensus 164 -~~~~l~LTG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~la-~~~~~~--p~~~~~~~~~~~ 221 (381)
T PLN02988 164 -FGEYVGLTGARLDGAEMLACGLATHFVPS-TRLTALEADLC-RIGSND--PTFASTILDAYT 221 (381)
T ss_pred -HHHHHHHcCCCCCHHHHHHcCCceEecCH-hHHHHHHHHHH-HhhccC--HHHHHHHHHHhh
Confidence 57899999999999999999999999998 88999988888 776665 666777777665
No 76
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=5.2e-43 Score=319.27 Aligned_cols=210 Identities=17% Similarity=0.157 Sum_probs=182.4
Q ss_pred eeeEeCcEEEEEEcCCCCCCC-------------CCCCHHHHHHHHHHHHHHHh-cCCCCeEEEEecCCCc-ccCCCChh
Q 026127 3 TLEKHGDVFVLTLTGSSDVDE-------------HRFGPPAIDSILSAIAKAKA-EATPGSALITTSHGKF-FSNGFDLA 67 (243)
Q Consensus 3 ~~~~~~~v~~i~ln~p~~~~~-------------N~l~~~~~~~l~~~l~~~~~-d~~v~~~vvl~g~g~~-F~~G~Dl~ 67 (243)
.++++++|++||||||+ +. |++|.+|+++|.++++.++. |++|| +||+||.|+. ||+|.|+.
T Consensus 261 ~~~~~~~va~itlnrP~--~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr-~vVl~g~G~~~F~aG~Dl~ 337 (546)
T TIGR03222 261 AIDRAARTATITLKGPK--AAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIG-LWVFRTQGDAELVLAADAL 337 (546)
T ss_pred EEeccCCEEEEEecChh--hcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeE-EEEEEcCCCCceecCcCcc
Confidence 45668999999999997 88 99999999999999999984 59999 9999999987 99999998
Q ss_pred hHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEE-ccccchHH-HHHHHhcceeEE-------ecCCceeeccc
Q 026127 68 WAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAV-NGHAAAAG-LTLALSHDYVIM-------RRDKGVLYMSE 138 (243)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav-~G~~~G~G-~~la~~~D~~ia-------~~~~~~f~~pe 138 (243)
.... . + ...........++++.+|.++||||||+| ||+|+||| ++|+++||+||+ +++ ++|++||
T Consensus 338 ~~~~--~-~--~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~-a~f~~~e 411 (546)
T TIGR03222 338 LEAH--K-D--HWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPE-PAITLSE 411 (546)
T ss_pred cccc--c-c--chhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCC-CEEeCCc
Confidence 4221 1 1 11112223344668889999999999999 89999999 999999999999 888 8999999
Q ss_pred cccCcCCChhh-HHHHHHHh-CCHHHH--HHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhH
Q 026127 139 VDIGLTLPDYF-AALFRAKV-GSATAR--RDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEV 214 (243)
Q Consensus 139 ~~~Gl~~p~~g-~~~l~~~~-g~~~~a--~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a 214 (243)
+++|+ +|++| +++|++++ | ..++ ++++++|+.++|+||+++|||++|+++ +++.+++.+++++++.+| |.+
T Consensus 412 ~~lGl-~p~~gg~~~L~~~v~G-~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a 486 (546)
T TIGR03222 412 LNFGL-YPMVNGLSRLATRFYA-EPAPVAAVRDKIGQALDAEEAERLGLVTAAPDD-IDWEDEIRIALEERASFS--PDA 486 (546)
T ss_pred ccccc-CCCcCcHHHHHHHhcC-chhHHHHHHHHhCCCCCHHHHHHcCCcccccCc-hHHHHHHHHHHHHHHhcC--HHH
Confidence 99999 78876 56899998 8 7777 559999999999999999999999998 889999999999999998 999
Q ss_pred HHHHHHHHhHHH
Q 026127 215 YAEIRKSLCPDL 226 (243)
Q Consensus 215 ~~~~k~~l~~~~ 226 (243)
++.+|+.++...
T Consensus 487 ~~~~K~~l~~~~ 498 (546)
T TIGR03222 487 LTGLEANLRFAG 498 (546)
T ss_pred HHHHHHHHhhcC
Confidence 999999987543
No 77
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=6.9e-43 Score=319.38 Aligned_cols=210 Identities=14% Similarity=0.122 Sum_probs=181.5
Q ss_pred eeeEeCcEEEEEEcCCCCCCC-------------CCCCHHHHHHHHHHHHHHHh-cCCCCeEEEEecCC-CcccCCCChh
Q 026127 3 TLEKHGDVFVLTLTGSSDVDE-------------HRFGPPAIDSILSAIAKAKA-EATPGSALITTSHG-KFFSNGFDLA 67 (243)
Q Consensus 3 ~~~~~~~v~~i~ln~p~~~~~-------------N~l~~~~~~~l~~~l~~~~~-d~~v~~~vvl~g~g-~~F~~G~Dl~ 67 (243)
.++++++|++||||||+ +. |++|.+|+.+|.+++++++. |++|| +||+||.| +.||+|.|++
T Consensus 265 ~~~~~~~va~itlnrP~--~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr-~vVltg~G~~~F~aG~Dl~ 341 (550)
T PRK08184 265 EIDRAARTATITVKAPT--AAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIG-TWVLKTEGDAAAVLAADAT 341 (550)
T ss_pred EEEccCCEEEEEEeCcc--cccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeE-EEEEEcCCCCcEEeCCChh
Confidence 34556899999999997 77 68999999999999999996 79999 99999999 5999999987
Q ss_pred hHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc-cccchHH-HHHHHhcceeEEe-------cCCceeeccc
Q 026127 68 WAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVN-GHAAAAG-LTLALSHDYVIMR-------RDKGVLYMSE 138 (243)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~-G~~~G~G-~~la~~~D~~ia~-------~~~~~f~~pe 138 (243)
.... . + ..........+++++.+|.++||||||+|| |+|+||| ++|+++||+||++ ++ ++|++||
T Consensus 342 ~~~~--~-~--~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~-a~f~~pe 415 (550)
T PRK08184 342 LLAH--K-D--HWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPA-PAITLSA 415 (550)
T ss_pred hhcc--c-c--hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCC-CEEECcc
Confidence 3221 1 1 111122234456688899999999999997 9999999 9999999999999 77 8999999
Q ss_pred cccCcCCChhh-HHHHHHH-hCCHHHHHHH--HhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhH
Q 026127 139 VDIGLTLPDYF-AALFRAK-VGSATARRDV--LLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEV 214 (243)
Q Consensus 139 ~~~Gl~~p~~g-~~~l~~~-~g~~~~a~~l--~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a 214 (243)
+++|+ +|++| +++|+++ +| ..+++++ +++|++++|+||+++|||++|+|+ +++.+++.+++++++..| |.+
T Consensus 416 ~~~Gl-~p~~gg~~~L~r~~vG-~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~ia~~~--p~a 490 (550)
T PRK08184 416 LNFGL-YPMVNGLSRLARRFYG-EPDPLAAVRAKIGQPLDADAAEELGLVTAAPDD-IDWEDEVRIALEERASLS--PDA 490 (550)
T ss_pred ccccC-CCCCCcHHHhHHHhcC-hHHHHHHHHHHhCCcCCHHHHHHcCCcccccCh-HHHHHHHHHHHHHHHhCC--HHH
Confidence 99999 78875 6799998 69 8888887 589999999999999999999998 899999999999999998 999
Q ss_pred HHHHHHHHhHHH
Q 026127 215 YAEIRKSLCPDL 226 (243)
Q Consensus 215 ~~~~k~~l~~~~ 226 (243)
+..+|+.++...
T Consensus 491 ~~~~K~~l~~~~ 502 (550)
T PRK08184 491 LTGMEANLRFAG 502 (550)
T ss_pred HHHHHHHHHhcC
Confidence 999999997653
No 78
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=2.4e-42 Score=326.75 Aligned_cols=198 Identities=23% Similarity=0.356 Sum_probs=176.6
Q ss_pred ceee-EeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLE-KHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~-~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++ ++++|++||||||+ +.|++|.+|+.+|.++++.++.|+++| +|||||.|++||+|+|++++..... .+..
T Consensus 8 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~~--~~~~ 82 (715)
T PRK11730 8 LQVDWLEDGIAELVFDAPG--SVNKLDRATLASLGEALDALEAQSDLK-GLLLTSAKDAFIVGADITEFLSLFA--APEE 82 (715)
T ss_pred EEEEEcCCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCcE-EEEEECCCCccccCcCHHHHhhhcc--CCHH
Confidence 3455 37899999999997 899999999999999999999999999 9999999999999999998754211 1122
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 83 ~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~-a~f~~pe~~lGl-~p~~g~~~~L~rlvG- 159 (715)
T PRK11730 83 ELSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPD-ARIGLPETKLGI-MPGFGGTVRLPRLIG- 159 (715)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCC-CEEeCchhhcCC-CCCchHHHHHHHhcC-
Confidence 23445566778899999999999999999999999999999999999988 899999999999 78876 568999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~ 208 (243)
...+++++++|++++|+||+++||||+|+|+ +++.+++.++|++++.+
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~ 207 (715)
T PRK11730 160 ADNALEWIAAGKDVRAEDALKVGAVDAVVAP-EKLQEAALALLKQAIAG 207 (715)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCH-HHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999998 88999999999999865
No 79
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.2e-41 Score=300.49 Aligned_cols=196 Identities=17% Similarity=0.196 Sum_probs=169.8
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.+++++++++||||||+ +.|++|.+|+.+|.++++.++.|++|+ +||++|.|++||+|+|++++..... ..+...
T Consensus 44 v~~e~~~~~~~ItLNRP~--~lNALs~~m~~eL~~al~~~~~D~~vr-vVVL~G~GkaFcAGgDl~~l~~~~~-~~~~~~ 119 (407)
T PLN02851 44 VLVEGRAKSRAAILNRPS--SLNALTIPMVARLKRLYESWEENPDIG-FVLMKGSGRAFCSGADVVSLYHLIN-EGNVEE 119 (407)
T ss_pred eEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCccCCcCHHHHHhhcc-ccchHH
Confidence 457788999999999997 899999999999999999999999999 9999999999999999998865321 111233
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhH-HHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA-ALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-~~l~~~~g~~ 160 (243)
...++...+++...|.++|||+||++||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+ +++++..| .
T Consensus 120 ~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~-a~famPE~~iGl-~PdvG~s~~L~rl~g-~ 196 (407)
T PLN02851 120 CKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDK-TVFAHPEVQMGF-HPDAGASYYLSRLPG-Y 196 (407)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCC-ceEecchhccCC-CCCccHHHHHHHhcC-H
Confidence 4556667788888999999999999999999999999999999999988 899999999999 798875 67888888 5
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhc
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~ 207 (243)
.+.++++||++++|++|+++||+++++++ +++ +.+.+.+.++..
T Consensus 197 -~g~~L~LTG~~i~a~eA~~~GLa~~~v~~-~~l-~~l~~~l~~~~~ 240 (407)
T PLN02851 197 -LGEYLALTGQKLNGVEMIACGLATHYCLN-ARL-PLIEERLGKLLT 240 (407)
T ss_pred -HHHHHHHhCCcCCHHHHHHCCCceeecCH-hhH-HHHHHHHHhhcc
Confidence 48899999999999999999999999998 666 556666655544
No 80
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=1.7e-41 Score=275.05 Aligned_cols=194 Identities=30% Similarity=0.486 Sum_probs=176.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+++++|.++++.++.|++++ +||++|.++.||+|.|++++..... . ...
T Consensus 1 i~~~~~~~i~~i~l~~~~--~~N~~~~~~~~~l~~~l~~~~~d~~~~-~vvl~~~~~~Fs~G~dl~~~~~~~~-~--~~~ 74 (195)
T cd06558 1 VLVERDGGVATITLNRPE--KRNALSLEMLDELAAALDEAEADPDVR-VVVLTGAGKAFCAGADLKELAALSD-A--GEE 74 (195)
T ss_pred CEEEEECCEEEEEECCcc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCceEeCcCHHHHhcccc-c--chh
Confidence 467889999999999996 699999999999999999999999999 9999999999999999999876432 1 113
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChh-hHHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDY-FAALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~-g~~~l~~~~g~~ 160 (243)
..++.+.+++++.++.++|||||+++||+|.|+|++++++||+||++++ ++|++||.++|+ +|+. +..++.+++| .
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~-~~~~~pe~~~G~-~p~~g~~~~l~~~~g-~ 151 (195)
T cd06558 75 ARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAED-AKFGLPEVKLGL-VPGGGGTQRLPRLVG-P 151 (195)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCC-CEEechhhhcCC-CCCCcHHHHHHHHhC-H
Confidence 5678888999999999999999999999999999999999999999998 899999999999 5554 4679999999 8
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l 205 (243)
..+++++++|+.++++||+++||+++++++ +++.+++.++++++
T Consensus 152 ~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~-~~l~~~a~~~a~~~ 195 (195)
T cd06558 152 ARARELLLTGRRISAEEALELGLVDEVVPD-EELLAAALELARRL 195 (195)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCCCeecCh-hHHHHHHHHHHhhC
Confidence 999999999999999999999999999998 88999999998763
No 81
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=2.9e-41 Score=319.38 Aligned_cols=192 Identities=23% Similarity=0.388 Sum_probs=170.0
Q ss_pred eeeE-eCcEEEEEEcCC-CCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC-CCcccCCCChhhHHhcCCCcchH
Q 026127 3 TLEK-HGDVFVLTLTGS-SDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH-GKFFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 3 ~~~~-~~~v~~i~ln~p-~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~-g~~F~~G~Dl~~~~~~~~~~~~~ 79 (243)
.+++ +++|++|+|||| + +.|++|.+|+.+|.+++++++.|+++| +||++|. |++||+|+|++++..... .
T Consensus 8 ~~~~~~~~va~itlnrp~~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vVl~~~~~~~F~aG~Dl~~~~~~~~----~ 80 (708)
T PRK11154 8 TLNVREDNIAVITIDVPGE--KMNTLKAEFAEQVRAILKQLREDKELK-GVVFISGKPDNFIAGADINMLAACKT----A 80 (708)
T ss_pred EEEEcCCCEEEEEECCCCC--CCcCCCHHHHHHHHHHHHHHHhCCCce-EEEEecCCCCCcccCcChHHhhccCC----H
Confidence 4566 689999999999 6 789999999999999999999999999 8888876 489999999998754211 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCC-ceeeccccccCcCCChhh-HHHHHHHh
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDK-GVLYMSEVDIGLTLPDYF-AALFRAKV 157 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~-~~f~~pe~~~Gl~~p~~g-~~~l~~~~ 157 (243)
.....+...++.++.+|.++||||||+|||+|+|||++|+++||+||+++++ ++|++||+++|+ +|++| +++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl-~p~~gg~~~L~r~v 159 (708)
T PRK11154 81 QEAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGL-LPGSGGTQRLPRLI 159 (708)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCC-CCCccHHhHHHhhc
Confidence 2223344556778899999999999999999999999999999999999873 589999999999 78876 57999999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHH
Q 026127 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQ 204 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~ 204 (243)
| ...+++|+++|++++|+||+++||||+++++ +++.+++.++|++
T Consensus 160 G-~~~A~~llltG~~i~a~eA~~~GLv~~vv~~-~~l~~~a~~~A~~ 204 (708)
T PRK11154 160 G-VSTALDMILTGKQLRAKQALKLGLVDDVVPH-SILLEVAVELAKK 204 (708)
T ss_pred C-HHHHHHHHHhCCcCCHHHHHHCCCCcEecCh-HHHHHHHHHHHHh
Confidence 9 9999999999999999999999999999998 8899999999988
No 82
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=4.8e-41 Score=317.23 Aligned_cols=189 Identities=22% Similarity=0.376 Sum_probs=167.9
Q ss_pred eEeCcEEEEEEcCC-CCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEE-EecCCCcccCCCChhhHHhcCCCcchHHHH
Q 026127 5 EKHGDVFVLTLTGS-SDVDEHRFGPPAIDSILSAIAKAKAEATPGSALI-TTSHGKFFSNGFDLAWAQAAGSRTGARERL 82 (243)
Q Consensus 5 ~~~~~v~~i~ln~p-~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vv-l~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 82 (243)
..+++|++|||||| + +.|++|.+|+.+|.+++++++.|++|| +|| ++|.|++||+|+|++++..... ....
T Consensus 6 ~~~~~Va~itlnrp~~--~~Nal~~~~~~eL~~~l~~~~~d~~vr-~VVl~~g~g~~FcaG~Dl~~~~~~~~----~~~~ 78 (699)
T TIGR02440 6 VREDGIAILTIDVPGE--KMNTLKAEFADQVSEILSQLKRDKSIR-GLVLVSGKPDNFIAGADISMLAACQT----AGEA 78 (699)
T ss_pred EcCCCEEEEEECCCCC--CCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEeCCCCceeeccCchhhhccCC----hhHH
Confidence 45689999999999 6 789999999999999999999999999 666 5788999999999998754211 2223
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecC-CceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 83 HYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRD-KGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~-~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
..+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++ +++|++||+++|+ +|++| ++++++++| .
T Consensus 79 ~~~~~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl-~p~~g~~~~L~r~vG-~ 156 (699)
T TIGR02440 79 KALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGL-LPGSGGTQRLPRLIG-V 156 (699)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccC-CCCccHHHHHHHhcC-H
Confidence 344556678889999999999999999999999999999999999986 3699999999999 78876 579999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAK 203 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~ 203 (243)
..+++++++|+.++|+||+++||||+|+|+ +++.+++.++|+
T Consensus 157 ~~A~~llltG~~~~a~eA~~~GLV~~vv~~-~~l~~~a~~~A~ 198 (699)
T TIGR02440 157 STALDMILTGKQLRAKQALKLGLVDDVVPQ-SILLDTAVEMAL 198 (699)
T ss_pred HHHHHHHHcCCcCCHHHHHhCCCCcEecCh-hHHHHHHHHHHH
Confidence 999999999999999999999999999998 889999999998
No 83
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=1.6e-40 Score=313.78 Aligned_cols=197 Identities=22% Similarity=0.327 Sum_probs=174.6
Q ss_pred ceeeE-eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++. +++|++|+||+|+ +.|++|.+|+.+|.+++++++.|+++| +||++|.|++||+|.|++++..... .. ..
T Consensus 8 i~~~~~~~gva~Itlnrp~--~~Nal~~~~~~eL~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~-~~ 82 (714)
T TIGR02437 8 IQVTALEDGIAELKFDAPG--SVNKFDRATLASLDQALDAIKAQSSLK-GVILTSGKDAFIVGADITEFLGLFA-LP-DA 82 (714)
T ss_pred EEEEEccCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCccccCcCHHHHhhccc-CC-HH
Confidence 34553 6899999999997 899999999999999999999999999 9999999999999999999864211 01 22
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+....++++.+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| ++++++++|
T Consensus 83 ~~~~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~-a~fglPEv~lGl-~Pg~Ggt~rL~rliG- 159 (714)
T TIGR02437 83 ELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDT-AKIGLPETKLGI-MPGFGGTVRLPRVIG- 159 (714)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCC-CEEecchhhcCC-CCCccHHHHHHHHhC-
Confidence 23344556678899999999999999999999999999999999999987 899999999999 79887 579999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhc
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~ 207 (243)
...+++++++|++++|+||+++||||+++++ +++.+.+.++++++..
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLvd~vv~~-~~l~~~a~~~a~~~~~ 206 (714)
T TIGR02437 160 ADNALEWIASGKENRAEDALKVGAVDAVVTA-DKLGAAALQLLKDAIN 206 (714)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCcEeeCh-hHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999998 7899999999988554
No 84
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=2.3e-40 Score=313.40 Aligned_cols=199 Identities=24% Similarity=0.359 Sum_probs=173.4
Q ss_pred ceeeEeCcEEEEEEcCCCCCC-CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVD-EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~-~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+||+|+ + .|++|.+++.+|.+++++++.|++||++||+||.|++||+|.|++++..... ..
T Consensus 15 ~~~~~~~gVa~itlnrP~--~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~----~~ 88 (737)
T TIGR02441 15 RHYEVKGDVAVVKIDSPN--SKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKT----AQ 88 (737)
T ss_pred EEEEEECCEEEEEEcCCC--CCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCC----hH
Confidence 467789999999999993 3 7999999999999999999999999945677999999999999999864211 23
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCC-ceeeccccccCcCCChhh-HHHHHHHhC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDK-GVLYMSEVDIGLTLPDYF-AALFRAKVG 158 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~-~~f~~pe~~~Gl~~p~~g-~~~l~~~~g 158 (243)
....+...+++++.+|.++||||||+|||+|+|||++|+++||+|||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus 89 ~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl-~Pg~Ggt~rLprliG 167 (737)
T TIGR02441 89 EVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGL-LPGAGGTQRLPKLTG 167 (737)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCC-CCCccHhhhHHHhhC
Confidence 334555667889999999999999999999999999999999999999883 589999999999 78886 569999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCH------------hHHHHHHHHHHHHHhcC
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSE------------EQVAEASMRLAKQLAGR 208 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~------------~~l~~~a~~~a~~l~~~ 208 (243)
...+++++++|++++|+||+++||||+|+++. +++.+.|.+++++++..
T Consensus 168 -~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~ 228 (737)
T TIGR02441 168 -VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANG 228 (737)
T ss_pred -HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcc
Confidence 89999999999999999999999999999851 46788888888887653
No 85
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=2e-40 Score=268.71 Aligned_cols=221 Identities=20% Similarity=0.302 Sum_probs=195.9
Q ss_pred ceeeEeCcEEEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcch--
Q 026127 2 CTLEKHGDVFVLTLT-GSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGA-- 78 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln-~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~-- 78 (243)
+.++++|++.+|.+| +|+ +.|+++.++..++..+++....|+++. .++++|.|++||+|.|+..+....+.+..
T Consensus 9 ~vv~~~~g~~~I~~~~~Pk--k~Nal~~e~y~~i~~al~~a~~dds~~-~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~ 85 (266)
T KOG0016|consen 9 IVVTRENGPFFIALNIRPK--KKNALNREDYVYIQRALEEANDDDSVS-ITVLSSNGSYFCSGLDFSPFAKALDDDANEE 85 (266)
T ss_pred eEEEecCCcEEEEecCCCc--ccccccHHHHHHHHHHHHHhhcccceE-EEEEecCccEEeeccccchhhhcCCCccccc
Confidence 457889999999999 997 899999999999999999999999987 99999999999999999988775431111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhH-HHHHHHh
Q 026127 79 RERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA-ALFRAKV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-~~l~~~~ 157 (243)
..........+..++.++..+|||+||.|||+++|.|..+...||+++|+|+ ++|..|+..+|. .|.+++ ++++++|
T Consensus 86 ~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dk-a~F~TPfa~lGq-~PEG~Ss~t~p~im 163 (266)
T KOG0016|consen 86 SDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDK-AWFQTPFAKLGQ-SPEGCSSVTLPKIM 163 (266)
T ss_pred chhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccc-eEEeccchhcCC-CCCcceeeeehHhh
Confidence 1122233344455889999999999999999999999999999999999965 899999999999 788885 6999999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
| ...|.+|++.|++++|+||.+.|||++|++. +++.+.++..++++++.+ |.++...|++++....+.+.
T Consensus 164 G-~~~A~E~ll~~~kltA~Ea~~~glVskif~~-~tf~~~v~~~ikq~s~l~--p~sl~~~K~L~rs~~k~~l~ 233 (266)
T KOG0016|consen 164 G-SASANEMLLFGEKLTAQEACEKGLVSKIFPA-ETFNEEVLKKIKQYSKLS--PESLLGMKKLLRSNIKEELI 233 (266)
T ss_pred c-hhhHHHHHHhCCcccHHHHHhcCchhhhcCh-HHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHH
Confidence 9 8999999999999999999999999999999 899999999999999987 99999999999887777665
No 86
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=2.7e-40 Score=301.46 Aligned_cols=219 Identities=18% Similarity=0.206 Sum_probs=176.9
Q ss_pred ceeeEeCcEEEEEEcCCC-----C---CCCCCCCHHHHHHHHHHHHHHH-hcCCCCeEEEEecC-CCcccCCCChhhHHh
Q 026127 2 CTLEKHGDVFVLTLTGSS-----D---VDEHRFGPPAIDSILSAIAKAK-AEATPGSALITTSH-GKFFSNGFDLAWAQA 71 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~-----~---~~~N~l~~~~~~~l~~~l~~~~-~d~~v~~~vvl~g~-g~~F~~G~Dl~~~~~ 71 (243)
+.++++++|++|+||||+ + ++.|++|.+|+.+|.+++++++ .|+++| +||+||. |++||+|.|++++..
T Consensus 13 v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vR-vVVLtg~~Gk~FcaG~DL~~~~~ 91 (546)
T TIGR03222 13 WKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVR-TVVMTSGKDRVFCSGANIFMLGL 91 (546)
T ss_pred EEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCee-EEEEecCCCCCCcCCcCHHHHhc
Confidence 567888999999999973 1 1679999999999999999999 789999 9999987 599999999998753
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecC-Cceeeccccc-cCcCCChhh
Q 026127 72 AGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRD-KGVLYMSEVD-IGLTLPDYF 149 (243)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~-~~~f~~pe~~-~Gl~~p~~g 149 (243)
... ................+...+.++||||||+|||+|+|+|++|+++||+||++++ .++|++||++ +|+ +|++|
T Consensus 92 ~~~-~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl-~P~~g 169 (546)
T TIGR03222 92 STH-AWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGV-LPGTG 169 (546)
T ss_pred ccc-chhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCc-CCccc
Confidence 211 0001111111122234556778999999999999999999999999999999986 2689999997 999 78876
Q ss_pred H-HHHH--HHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCCh-----hHHHHHHHH
Q 026127 150 A-ALFR--AKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAG-----EVYAEIRKS 221 (243)
Q Consensus 150 ~-~~l~--~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~-----~a~~~~k~~ 221 (243)
+ .++. +++| ..++++|+++|++++|+||+++||||+|+|+ +++.+++.++|++++..|+.| ..+..+++.
T Consensus 170 g~~~l~~~~~vg-~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~lA~~la~~~p~~~~~~~~~~~~~~~~ 247 (546)
T TIGR03222 170 GLTRVTDKRRVR-RDHADIFCTIEEGVRGKRAKEWRLVDEVVKP-SQFDAAIAERAAELAAQSDRPADAKGVQLTPLERT 247 (546)
T ss_pred hhhhccccchhC-HHHHHHHHHcCCCccHHHHHHcCCceEEeCh-HHHHHHHHHHHHHHHhCCCCCcCCCceeeeehhhh
Confidence 4 5676 6899 8999999999999999999999999999998 889999999999999987544 233445555
Q ss_pred HhHH
Q 026127 222 LCPD 225 (243)
Q Consensus 222 l~~~ 225 (243)
+..+
T Consensus 248 ~~~~ 251 (546)
T TIGR03222 248 IDED 251 (546)
T ss_pred cccC
Confidence 5443
No 87
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1.7e-40 Score=261.57 Aligned_cols=211 Identities=18% Similarity=0.314 Sum_probs=190.8
Q ss_pred EeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC-CCcccCCCChhhHHhcCCCcchHHHHHH
Q 026127 6 KHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH-GKFFSNGFDLAWAQAAGSRTGARERLHY 84 (243)
Q Consensus 6 ~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 84 (243)
.+.||..|-+|||. +.|+++..|+++|.++++.+..|+.+| +|++.+. ++.||+|.||++-... .+.+...
T Consensus 37 ~~~GItvl~mNRpa--~kNsl~r~~~~~l~~~l~~lk~D~~~R-vvilrS~vpgvFCaGADLKER~~M-----s~~Ev~~ 108 (291)
T KOG1679|consen 37 KDEGITILNMNRPA--KKNSLGRVFVKQLREVLDELKYDNKVR-VVILRSLVPGVFCAGADLKERKTM-----SPSEVTR 108 (291)
T ss_pred CCCCeEEEecCChh--hhccHHHHHHHHHHHHHHHHhhCCcee-EEEEecCCCceeecCcchHhhhcC-----CHHHHHH
Confidence 35689999999998 999999999999999999999999999 7777775 6999999999987653 2677889
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCHHHH
Q 026127 85 MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSATAR 163 (243)
Q Consensus 85 ~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a 163 (243)
|.+.++.++..|.++|.||||+|+|.++|||++|+++||+|+|+++ ++++++|.++++ +|+.| +++|+|.+| ...+
T Consensus 109 fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~-akmGLvET~lai-iPGaGGtQRLpR~vg-~ala 185 (291)
T KOG1679|consen 109 FVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASS-AKMGLVETKLAI-IPGAGGTQRLPRIVG-VALA 185 (291)
T ss_pred HHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhh-ccccccccceee-ecCCCccchhHHHHh-HHHH
Confidence 9999999999999999999999999999999999999999999988 899999999999 78887 679999999 9999
Q ss_pred HHHHhcCcCCCHHHHHHcCcchhccCCH---hHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHH
Q 026127 164 RDVLLRAKKIKGEEALRMGLVEAAYDSE---EQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGV 229 (243)
Q Consensus 164 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~---~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~ 229 (243)
+++++|++.+++.||..+|||+.||... |...+.+.++|++|..+. |.+++..|..++....-.
T Consensus 186 KELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~g--Piavr~aKlAIn~G~evd 252 (291)
T KOG1679|consen 186 KELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQG--PIAVRLAKLAINLGMEVD 252 (291)
T ss_pred HhHhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCC--chhhhHHHHHhccCceec
Confidence 9999999999999999999999999653 366777999999998876 899999999887665443
No 88
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=4.8e-39 Score=294.10 Aligned_cols=205 Identities=18% Similarity=0.213 Sum_probs=169.7
Q ss_pred ceeeEeCcEEEEEEcCCC-----CC---CCCCCCHHHHHHHHHHHHHHH-hcCCCCeEEEEecC-CCcccCCCChhhHHh
Q 026127 2 CTLEKHGDVFVLTLTGSS-----DV---DEHRFGPPAIDSILSAIAKAK-AEATPGSALITTSH-GKFFSNGFDLAWAQA 71 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~-----~~---~~N~l~~~~~~~l~~~l~~~~-~d~~v~~~vvl~g~-g~~F~~G~Dl~~~~~ 71 (243)
+.++++++|++|+||||+ ++ +.|++|.+|+.+|.+++++++ +|++|| +||++|. |++||+|.|++++..
T Consensus 17 ~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vr-vVVLtg~ggk~FcaG~DL~~~~~ 95 (550)
T PRK08184 17 WKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVR-TVVVTSAKDRVFCSGANIFMLGG 95 (550)
T ss_pred EEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeE-EEEEecCCCCCCCCccCHHhHhc
Confidence 467788999999999763 12 679999999999999999999 789999 9999997 499999999998753
Q ss_pred cCCCcchHHHHHHHH-HHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecC-Cceeeccccc-cCcCCChh
Q 026127 72 AGSRTGARERLHYMV-ESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRD-KGVLYMSEVD-IGLTLPDY 148 (243)
Q Consensus 72 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~-~~~f~~pe~~-~Gl~~p~~ 148 (243)
... .. ......+. .....+..++.++||||||+|||+|+|+|++|+++|||||++++ .++|++||++ +|+ +|++
T Consensus 96 ~~~-~~-~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl-~P~~ 172 (550)
T PRK08184 96 SSH-AW-KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGV-LPGT 172 (550)
T ss_pred ccc-ch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhcccc-CCCc
Confidence 211 00 11111111 12233456788999999999999999999999999999999976 3689999997 999 7887
Q ss_pred h-HHHHH--HHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCCh
Q 026127 149 F-AALFR--AKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAG 212 (243)
Q Consensus 149 g-~~~l~--~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~ 212 (243)
| ..++. +++| ...+++++++|+.++|+||+++|||++|+|+ +++.+++.+++++|+.+|+.+
T Consensus 173 gg~~rl~~~~~vg-~~~A~~llltG~~i~AeeA~~~GLVd~vv~~-d~l~~~a~~~A~~ia~~~~~~ 237 (550)
T PRK08184 173 GGLTRVTDKRKVR-RDLADIFCTIEEGVRGKRAVDWRLVDEVVKP-SKFDAKVAERAAELAAASDRP 237 (550)
T ss_pred chHHHhhhhhhcC-HHHHHHHHHhCCcccHHHHHHcCCccEeeCH-HHHHHHHHHHHHHHHhCCCCC
Confidence 6 45777 6799 8999999999999999999999999999998 899999999999999987443
No 89
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=2.4e-38 Score=249.78 Aligned_cols=212 Identities=20% Similarity=0.342 Sum_probs=182.8
Q ss_pred ceeeEe-CcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC--C-CcccCCCChhhHHh-cCCCc
Q 026127 2 CTLEKH-GDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH--G-KFFSNGFDLAWAQA-AGSRT 76 (243)
Q Consensus 2 ~~~~~~-~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~--g-~~F~~G~Dl~~~~~-~~~~~ 76 (243)
|.+++. ++|+.|++|||+ .+|++.+....|+.+++..+..|++|. +||+||. | .+||+|+|-+--.. ....+
T Consensus 20 I~Y~~~~~giakItinRPe--vrNAfrP~TV~Em~~Af~~Ar~d~~vG-vi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~ 96 (282)
T COG0447 20 ITYEKSVDGIAKITINRPE--VRNAFRPKTVDEMIDAFADARDDPNVG-VILLTGNGDGDKAFCSGGDQKVRGDSGGYVD 96 (282)
T ss_pred eEEeeccCceEEEEecChh--hhccCCCccHHHHHHHHHhhhcCCCcc-EEEEecCCCCCeeeecCCCceecccCCCccC
Confidence 467776 899999999998 999999999999999999999999998 9999984 4 99999999874322 11101
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHH
Q 026127 77 GARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAK 156 (243)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~ 156 (243)
. +...+ -...++-+.|+.+||||||.|+|.++|||-.|-+.||+.||+++ ++|+....++|--=+++|+.+|.+.
T Consensus 97 d--~~~~r--LnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~n-A~FgQTgp~VGSFD~G~Gs~ylar~ 171 (282)
T COG0447 97 D--DGIPR--LNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADN-AIFGQTGPKVGSFDGGYGSSYLARI 171 (282)
T ss_pred C--ccCcc--cchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhc-chhcCCCCCcccccCcccHHHHHHH
Confidence 1 11111 12345666788999999999999999999999999999999998 8999999999982356678899999
Q ss_pred hCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
+| .+.|+++.+.++.++|+||+++|+||.|||. ++|+++..++++++..++ |.+++.+|..++.+
T Consensus 172 VG-qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~-~~LE~e~v~W~~E~l~kS--P~AlR~LK~Afnad 236 (282)
T COG0447 172 VG-QKKAREIWFLCRQYDAEEALDMGLVNTVVPH-ADLEKETVQWAREMLAKS--PTALRMLKAAFNAD 236 (282)
T ss_pred hh-hhhhHHhhhhhhhccHHHHHhcCceeeeccH-HHHHHHHHHHHHHHHhcC--hHHHHHHHHHhcCC
Confidence 99 9999999999999999999999999999998 899999999999999998 99999999988754
No 90
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=8e-36 Score=233.56 Aligned_cols=209 Identities=22% Similarity=0.306 Sum_probs=185.7
Q ss_pred eeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHH
Q 026127 4 LEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLH 83 (243)
Q Consensus 4 ~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 83 (243)
++.+++|-.|+||+|+ +.|+++.+|+.+|.+.+.....+.++| +|||+..|+.||+|.||+++.+... .+.-.
T Consensus 36 ~~~~~gvR~i~l~npK--k~NtLSLaM~~~Lq~~ll~d~d~~dlr-~viita~GkifSaGH~LKELt~e~g----~d~ha 108 (287)
T KOG1682|consen 36 VKEHNGVREITLNNPK--KLNTLSLAMMCALQDALLKDKDNLDLR-CVIITAQGKIFSAGHNLKELTNEPG----SDIHA 108 (287)
T ss_pred cccccceeeeeecCcc--ccchhhHHHHHHHHHHHhhccccccee-EEEEecCCccccccccHHHhhcCcc----chHHH
Confidence 4456899999999998 899999999999999999998888999 9999999999999999999987422 33344
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHH
Q 026127 84 YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATAR 163 (243)
Q Consensus 84 ~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a 163 (243)
..++...+++.-|+++|+|||+-|||.+..+||.|...||++||+++ ++|..|...+|+ +....+.-+.|.++ +..+
T Consensus 109 evFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~-SkF~tPG~~vGl-FCSTPGvAlaRavp-Rkva 185 (287)
T KOG1682|consen 109 EVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKN-SKFSTPGAGVGL-FCSTPGVALARAVP-RKVA 185 (287)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecC-ccccCCCCceee-EecCcchhHhhhcc-hhHH
Confidence 56777888999999999999999999999999999999999999988 899999999999 77666667889999 8999
Q ss_pred HHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 164 RDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 164 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
.+|++||.+++++||+..||+++|||+ +|++.++.++++.|-..+ +.....-|...++.
T Consensus 186 ~~ML~Tg~Pi~~eeAl~sGlvskvVp~-~el~~e~~~i~~~i~~~s--rav~slgk~f~y~q 244 (287)
T KOG1682|consen 186 AYMLMTGLPITGEEALISGLVSKVVPA-EELDKEIEEITNAIKAKS--RAVISLGKEFYYKQ 244 (287)
T ss_pred HHHHHhCCCCchHHHHHhhhhhhcCCH-HHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHH
Confidence 999999999999999999999999998 899999999999998876 55556666555544
No 91
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.97 E-value=2.3e-31 Score=224.43 Aligned_cols=186 Identities=20% Similarity=0.248 Sum_probs=162.9
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC-CCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH-GKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
|.++..+....||||||+ ..|++|.+|...+.-.+..++.++.++ +||+.|. +++||+|+|+........ ++...
T Consensus 40 VL~e~~~~~r~itLNRPK--aLNAlnleMv~~~~~~L~~we~s~~~k-~vIlkgs~~raFCAGgDI~~~ae~~~-d~~~~ 115 (401)
T KOG1684|consen 40 VLVEGKGCARVITLNRPK--ALNALNLEMVLSIYPKLVEWEKSPLVK-LVILKGSGGRAFCAGGDIKAVAESIK-DKETP 115 (401)
T ss_pred eEEecCCceeEEEecCch--hhccccHHHHHHHHHHHHhhccCCCce-EEEEecCCCceeecCccHHHHHHHhh-cCCch
Confidence 456778889999999997 789999999999999999999999999 8888888 599999999986554332 33345
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHH-HHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAA-LFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~-~l~~~~g~ 159 (243)
..+.++..-+.+...|.++.||.||.++|..+|||+.|+..--||||+|+ +.|.+||..+|+ +|+.|+. +++|.-|
T Consensus 116 ~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATer-T~~AmPEt~IGl-fPDVG~Sy~lsrlpg- 192 (401)
T KOG1684|consen 116 EVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATER-TVFAMPETGIGL-FPDVGASYFLSRLPG- 192 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeecc-ceeccccccccc-ccCccceeehhhCcc-
Confidence 67788888899999999999999999999999999999999999999988 899999999999 9999976 4555444
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAE 196 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~ 196 (243)
....++.+||+++++.+|+..||.+.-|++ +++-.
T Consensus 193 -~lg~YLgLTG~rl~GaD~~~~GlATHyv~S-~~l~~ 227 (401)
T KOG1684|consen 193 -YLGLYLGLTGQRLSGADALRCGLATHYVPS-EKLPS 227 (401)
T ss_pred -HHHHhhhhccceecchHHHHhcchhhccch-hhhhH
Confidence 677899999999999999999999999998 55533
No 92
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.88 E-value=1.6e-21 Score=157.01 Aligned_cols=152 Identities=22% Similarity=0.260 Sum_probs=118.7
Q ss_pred EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHH
Q 026127 10 VFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESF 89 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (243)
|+.|.++.+ ++..+...+.+.++.+..++ ++ .|++. .=|.|+++...
T Consensus 1 ~~vv~i~g~-------I~~~~~~~l~~~l~~a~~~~-~~-~vvl~----InSpGG~v~~~-------------------- 47 (187)
T cd07020 1 VYVLEINGA-------ITPATADYLERAIDQAEEGG-AD-ALIIE----LDTPGGLLDST-------------------- 47 (187)
T ss_pred CEEEEEeeE-------EChHHHHHHHHHHHHHHhCC-CC-EEEEE----EECCCCCHHHH--------------------
Confidence 356777644 67778889999999998765 67 66663 23556655432
Q ss_pred HHHHHHHhcCCCcEEEEEc---cccchHHHHHHHhcceeEEecCCceeeccccccCcCCChh---------------hHH
Q 026127 90 RPVVAAMMDLPMPTVAAVN---GHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDY---------------FAA 151 (243)
Q Consensus 90 ~~~~~~l~~~~kp~Iaav~---G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~---------------g~~ 151 (243)
..++.+|..+|||||++|+ |+|.|+|+.++++||++|++++ ++|+.++...+. .+.. ...
T Consensus 48 ~~i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~-a~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 125 (187)
T cd07020 48 REIVQAILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPG-TNIGAAHPVAIG-GGGGSDPVMEKKILNDAVAYIR 125 (187)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCC-CcEEeccccccC-CCCcchHHHHHHHHHHHHHHHH
Confidence 2355667789999999999 9999999999999999999998 899999988554 3322 234
Q ss_pred HHHHHhCCH--HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHH
Q 026127 152 LFRAKVGSA--TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEA 197 (243)
Q Consensus 152 ~l~~~~g~~--~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~ 197 (243)
.+.++.| . ..+++++++|+.|+++||+++||||+|+++.+++...
T Consensus 126 ~l~~~~G-~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~ 172 (187)
T cd07020 126 SLAELRG-RNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKK 172 (187)
T ss_pred HHHHHcC-CCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHH
Confidence 6788888 5 6788999999999999999999999999984456543
No 93
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.85 E-value=1.6e-20 Score=149.98 Aligned_cols=144 Identities=18% Similarity=0.192 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 026127 28 PPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAV 107 (243)
Q Consensus 28 ~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav 107 (243)
.-.+.+|.++++++.+|++|| +||+++ +|.|.|+.... .+.+++..+.+++|||||++
T Consensus 21 ~~~~~~l~~~l~~a~~d~~v~-~vvl~~----~~~gg~~~~~~-----------------~~~~~i~~~~~~~kpVia~v 78 (177)
T cd07014 21 NVSGDTTAAQIRDARLDPKVK-AIVLRV----NSPGGSVTASE-----------------VIRAELAAARAAGKPVVASG 78 (177)
T ss_pred CcCHHHHHHHHHHHhcCCCce-EEEEEe----eCCCcCHHHHH-----------------HHHHHHHHHHhCCCCEEEEE
Confidence 346789999999999999999 999976 68888776421 23446777888999999999
Q ss_pred ccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HH--------HHHHHhC-CHHHHHHHHhcCcCCCHHH
Q 026127 108 NGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AA--------LFRAKVG-SATARRDVLLRAKKIKGEE 177 (243)
Q Consensus 108 ~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~--------~l~~~~g-~~~~a~~l~l~g~~~~a~e 177 (243)
+|.|.|+|+.|+++||+++++++ ++|+++.+..+. -+... .. .+.+..| .+...++++..|..++|+|
T Consensus 79 ~G~a~g~g~~la~a~D~i~a~~~-a~~~~~G~~~~~-~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~ 156 (177)
T cd07014 79 GGNAASGGYWISTPANYIVANPS-TLVGSIGIFGVQ-LADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQD 156 (177)
T ss_pred CCchhHHHHHHHHhCCEEEECCC-CeEEEechHhhH-HHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHH
Confidence 99999999999999999999998 889988776553 22111 11 2333333 1555778888999999999
Q ss_pred HHHcCcchhccCCHhHHHH
Q 026127 178 ALRMGLVEAAYDSEEQVAE 196 (243)
Q Consensus 178 A~~~Glv~~v~~~~~~l~~ 196 (243)
|++.||||++.+. +++.+
T Consensus 157 A~~~GLVD~v~~~-~e~~~ 174 (177)
T cd07014 157 AKANGLVDSLGSF-DDAVA 174 (177)
T ss_pred HHHcCCcccCCCH-HHHHH
Confidence 9999999999986 66654
No 94
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.73 E-value=5.3e-17 Score=133.13 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=81.2
Q ss_pred cEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHH
Q 026127 9 DVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVES 88 (243)
Q Consensus 9 ~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (243)
+|+.|.++.|=....+.-+...+.++.++++++..|++|+ +||++ .||.|+|+.....
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~-~ivL~----~~s~Gg~~~~~~~----------------- 58 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVK-AIVLR----VNSPGGSVTASEV----------------- 58 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCce-EEEEE----EcCCCcCHHHHHH-----------------
Confidence 3555655533111233334557899999999999999999 89986 7999999876532
Q ss_pred HHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceee
Q 026127 89 FRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLY 135 (243)
Q Consensus 89 ~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~ 135 (243)
+.+.+..+.+++||||++++|.|.|+|+.|+++||++|++++ ++++
T Consensus 59 ~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~-a~~g 104 (211)
T cd07019 59 IRAELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPS-TLTG 104 (211)
T ss_pred HHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCC-CEEE
Confidence 234566778899999999999999999999999999999987 6664
No 95
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.67 E-value=6.9e-16 Score=121.29 Aligned_cols=135 Identities=21% Similarity=0.200 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
++..+..+|.+.+++++.|+.++ .|++.. .|.|+++... ..+...|..++||||+
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~-~ivl~~----~s~Gg~~~~~--------------------~~i~~~l~~~~kpvva 62 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVK-AIVLEV----NTPGGRVDAG--------------------MNIVDALQASRKPVIA 62 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCc-eEEEEE----ECCCcCHHHH--------------------HHHHHHHHHhCCCEEE
Confidence 66788999999999999999999 888854 5777766532 2345566778899999
Q ss_pred EEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCCh----------hhH---HHHHHH------hCCHHHHHHH
Q 026127 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPD----------YFA---ALFRAK------VGSATARRDV 166 (243)
Q Consensus 106 av~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~----------~g~---~~l~~~------~g~~~~a~~l 166 (243)
.++|.|.++|+.|+++||.|++.++ +.|++.....+..... .-. ..+... +. .....+.
T Consensus 63 ~~~g~~~s~g~~la~~~d~~~~~~~-a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~-~~~~~~~ 140 (161)
T cd00394 63 YVGGQAASAGYYIATAANKIVMAPG-TRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQT-TEKLEED 140 (161)
T ss_pred EECChhHHHHHHHHhCCCEEEECCC-CEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence 9999999999999999999999998 7898877765552111 000 111111 22 3345677
Q ss_pred HhcCcCCCHHHHHHcCcchhc
Q 026127 167 LLRAKKIKGEEALRMGLVEAA 187 (243)
Q Consensus 167 ~l~g~~~~a~eA~~~Glv~~v 187 (243)
+..+..++++||+++||||+|
T Consensus 141 ~~~~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 141 IEKDLVLTAQEALEYGLVDAL 161 (161)
T ss_pred hcCCcEEcHHHHHHcCCcCcC
Confidence 778999999999999999975
No 96
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.67 E-value=5.5e-16 Score=126.92 Aligned_cols=96 Identities=18% Similarity=0.262 Sum_probs=79.0
Q ss_pred EEEEEEcCCCCCCCCCCC---HHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHH
Q 026127 10 VFVLTLTGSSDVDEHRFG---PPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMV 86 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~l~---~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 86 (243)
|++|.++.+ ++ ..++.+|.++++.+.+|++++ +|++.+ +|.|+|+....
T Consensus 2 v~vi~i~g~-------i~~~~~~~~~~l~~~l~~a~~d~~i~-~ivl~~----~s~Gg~~~~~~---------------- 53 (208)
T cd07023 2 IAVIDIEGT-------ISDGGGIGADSLIEQLRKAREDDSVK-AVVLRI----NSPGGSVVASE---------------- 53 (208)
T ss_pred EEEEEEEEE-------EcCCCCCCHHHHHHHHHHHHhCCCCc-EEEEEE----ECCCCCHHHHH----------------
Confidence 567777654 44 689999999999999999999 889877 58898876522
Q ss_pred HHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceee
Q 026127 87 ESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLY 135 (243)
Q Consensus 87 ~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~ 135 (243)
.+.+.+..+..++|||||+++|.|.|+|+.++++||+++++++ +.|+
T Consensus 54 -~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~-s~~g 100 (208)
T cd07023 54 -EIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPT-TITG 100 (208)
T ss_pred -HHHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCC-CeEE
Confidence 1244566778889999999999999999999999999999987 6664
No 97
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.66 E-value=1.1e-15 Score=125.66 Aligned_cols=90 Identities=24% Similarity=0.183 Sum_probs=69.8
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCC
Q 026127 22 DEHR-FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLP 100 (243)
Q Consensus 22 ~~N~-l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (243)
..|+ ++..++.+|.+++++++.|++|+ +||++. +|.|.++.... .+.+.+..+.. +
T Consensus 17 ~~~~~~~~~~~~~l~~~l~~a~~d~~i~-~Vvl~~----~s~gg~~~~~~-----------------~l~~~l~~~~~-~ 73 (214)
T cd07022 17 WLEASSGLTSYEGIAAAIRAALADPDVR-AIVLDI----DSPGGEVAGVF-----------------ELADAIRAARA-G 73 (214)
T ss_pred cccCCCCcccHHHHHHHHHHHhhCCCCc-EEEEEE----eCCCCcHHHHH-----------------HHHHHHHHHhc-C
Confidence 3453 45789999999999999999999 888864 56676544321 12333444444 6
Q ss_pred CcEEEEEccccchHHHHHHHhcceeEEecCCceee
Q 026127 101 MPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLY 135 (243)
Q Consensus 101 kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~ 135 (243)
|||||+++|.|.|+|+.++++||+++++++ +.|+
T Consensus 74 KpViA~v~g~a~s~gy~lA~~aD~i~a~~~-a~~g 107 (214)
T cd07022 74 KPIVAFVNGLAASAAYWIASAADRIVVTPT-AGVG 107 (214)
T ss_pred CCEEEEECCchhhHHHHHHhcCCEEEEcCC-CeEE
Confidence 999999999999999999999999999988 6664
No 98
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.62 E-value=6.7e-15 Score=120.37 Aligned_cols=154 Identities=17% Similarity=0.261 Sum_probs=105.0
Q ss_pred EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHH
Q 026127 10 VFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESF 89 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (243)
|++|.++.+ ++ ....+|.++++++.+|++++ +||++. .|.|+++...
T Consensus 2 v~vi~i~g~-------i~-~s~~~l~~~l~~a~~d~~i~-~vvl~~----~s~Gg~~~~~-------------------- 48 (207)
T TIGR00706 2 IAILPVSGA-------IA-VSPEDFDKKIKRIKDDKSIK-ALLLRI----NSPGGTVVAS-------------------- 48 (207)
T ss_pred EEEEEEEEE-------Ee-cCHHHHHHHHHHHhhCCCcc-EEEEEe----cCCCCCHHHH--------------------
Confidence 677778754 32 34678999999999999999 899876 4778766543
Q ss_pred HHHHHHHhcCC--CcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccc------------cCcCC----------
Q 026127 90 RPVVAAMMDLP--MPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVD------------IGLTL---------- 145 (243)
Q Consensus 90 ~~~~~~l~~~~--kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~------------~Gl~~---------- 145 (243)
..+..+|.+++ ||||+.++|.|.|+|+.|+++||.++++++ +.++...+. +|+.+
T Consensus 49 ~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~-a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~ 127 (207)
T TIGR00706 49 EEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPG-TITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKD 127 (207)
T ss_pred HHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCC-CeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcC
Confidence 22444555555 999999999999999999999999999998 655432111 22210
Q ss_pred ---C-----hhhHHHHH-----------------HHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHH
Q 026127 146 ---P-----DYFAALFR-----------------AKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMR 200 (243)
Q Consensus 146 ---p-----~~g~~~l~-----------------~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~ 200 (243)
| .-.-..+. |.+. ....+ -++.|+.|++++|++.||||++... +++.+.+.+
T Consensus 128 ~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~-~~~~~-~~~~~~~~~~~~A~~~gLvD~i~~~-~~~~~~~~~ 204 (207)
T TIGR00706 128 IGSPTRELTPEERDILQNLVNESYEQFVQVVAKGRNLP-VEDVK-KFADGRVFTGRQALKLRLVDKLGTE-DDALKWLAE 204 (207)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHH-HHhcCCcccHHHHHHcCCCcccCCH-HHHHHHHHH
Confidence 0 00000111 1122 22222 3567899999999999999999976 666555444
No 99
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.61 E-value=6.2e-15 Score=115.79 Aligned_cols=129 Identities=16% Similarity=0.173 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc
Q 026127 29 PAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVN 108 (243)
Q Consensus 29 ~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~ 108 (243)
.+...+.+.++.+..++.+ .+.+.+ .|+++.. ...++..|..+|||||+.++
T Consensus 15 ~~~~~~~~~l~~~~~~~~i--~l~ins------pGG~~~~--------------------~~~i~~~i~~~~~pvi~~v~ 66 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI--TVRINS------PGGDVFA--------------------GLAIYNALKRHKGKVTVKID 66 (160)
T ss_pred cCHHHHHHHHHhccCCCCE--EEEEEC------CCCCHHH--------------------HHHHHHHHHhcCCCEEEEEc
Confidence 5778888889988877443 455544 4443322 13466777888999999999
Q ss_pred cccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh----------------HHHHHHHhCC-HHHHHHHHhcCc
Q 026127 109 GHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF----------------AALFRAKVGS-ATARRDVLLRAK 171 (243)
Q Consensus 109 G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g----------------~~~l~~~~g~-~~~a~~l~l~g~ 171 (243)
|.|.|+|+.++++||+|+++++ ++|.++....|. .+... ...+.++.|. ....++++..+.
T Consensus 67 g~a~s~g~~ia~a~d~~~~~~~-a~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~ 144 (160)
T cd07016 67 GLAASAASVIAMAGDEVEMPPN-AMLMIHNPSTGA-AGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAET 144 (160)
T ss_pred chHHhHHHHHHhcCCeEEECCC-cEEEEECCcccc-CcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCe
Confidence 9999999999999999999998 889987776665 33321 2236677774 355666666677
Q ss_pred CCCHHHHHHcCcchhc
Q 026127 172 KIKGEEALRMGLVEAA 187 (243)
Q Consensus 172 ~~~a~eA~~~Glv~~v 187 (243)
.++++||+++||||+|
T Consensus 145 ~l~a~eA~~~GliD~v 160 (160)
T cd07016 145 WLTAQEAVELGFADEI 160 (160)
T ss_pred ECcHHHHHHcCCCCcC
Confidence 8999999999999986
No 100
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.59 E-value=1.1e-14 Score=135.38 Aligned_cols=173 Identities=20% Similarity=0.239 Sum_probs=121.0
Q ss_pred EeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHH
Q 026127 6 KHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYM 85 (243)
Q Consensus 6 ~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 85 (243)
.++.|+.|.++.+=.+..|..+....+.+.+.++++..|++|| +||++-. |.|++....
T Consensus 306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~Vk-aIVLrin----SpGGs~~as---------------- 364 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIK-AVVLRIN----SPGGSVFAS---------------- 364 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCce-EEEEEec----CCCCCHHHH----------------
Confidence 4678999999865311234334445677889999999999999 8888754 334432211
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCcee------eccc------cccCcCCChhh-HH-
Q 026127 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVL------YMSE------VDIGLTLPDYF-AA- 151 (243)
Q Consensus 86 ~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f------~~pe------~~~Gl~~p~~g-~~- 151 (243)
+.+.+.+.++...+||||+.++|.|.+||+.++++||.++|++. +.+ +.+. .++|+ .|+.. ..
T Consensus 365 -e~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~-t~~GSIGv~~~~~~~~~~l~klGi-~~~~~~t~~ 441 (584)
T TIGR00705 365 -EIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPN-TITGSIGVFSVLPTFENSLDRIGV-HVDGVSTHE 441 (584)
T ss_pred -HHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCC-CeeecCEEEEEccCHHHHHHhcCC-ceEEEeccC
Confidence 12234555566788999999999999999999999999999987 555 4442 46777 34322 11
Q ss_pred ---------------------------HHHHHhCCHHH-----HHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHH
Q 026127 152 ---------------------------LFRAKVGSATA-----RRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASM 199 (243)
Q Consensus 152 ---------------------------~l~~~~g~~~~-----a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~ 199 (243)
.+..+++ ..+ ..+.+.+|+.|+++||+++||||++..- ++|.
T Consensus 442 ~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va-~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~~-----~~Ai 515 (584)
T TIGR00705 442 LANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVS-AGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGGL-----DEAV 515 (584)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCCH-----HHHH
Confidence 1222444 333 5677889999999999999999999542 5566
Q ss_pred HHHHHHhcC
Q 026127 200 RLAKQLAGR 208 (243)
Q Consensus 200 ~~a~~l~~~ 208 (243)
+.|++++..
T Consensus 516 ~~a~~la~~ 524 (584)
T TIGR00705 516 AKAAKLAHC 524 (584)
T ss_pred HHHHHHcCC
Confidence 777777776
No 101
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.51 E-value=4.8e-13 Score=106.56 Aligned_cols=151 Identities=23% Similarity=0.317 Sum_probs=106.7
Q ss_pred EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHH
Q 026127 10 VFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESF 89 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (243)
|..|.++.+ ++......+.+.++++.+++ ++ .|++. .=|.|+.+.. .
T Consensus 1 v~vi~i~g~-------I~~~~~~~l~~~l~~a~~~~-~~-~ivl~----inspGG~v~~--------------------~ 47 (178)
T cd07021 1 VYVIPIEGE-------IDPGLAAFVERALKEAKEEG-AD-AVVLD----IDTPGGRVDS--------------------A 47 (178)
T ss_pred CEEEEEeeE-------ECHHHHHHHHHHHHHHHhCC-CC-eEEEE----EECcCCCHHH--------------------H
Confidence 356667644 67788888999999999886 56 56653 2455665443 2
Q ss_pred HHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCCh----------hh--HHHHHHHh
Q 026127 90 RPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPD----------YF--AALFRAKV 157 (243)
Q Consensus 90 ~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~----------~g--~~~l~~~~ 157 (243)
..++..|.++|+|||+.|+|.|.++|+.++++||+++++++ +.++.++.-.+- ++ +- ..-+.++-
T Consensus 48 ~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~-a~iG~~~~v~~~--~~~~~~~K~~~~~~~~~~~~A~~~ 124 (178)
T cd07021 48 LEIVDLILNSPIPTIAYVNDRAASAGALIALAADEIYMAPG-ATIGAAEPIPGD--GNGAADEKVQSYWRAKMRAAAEKK 124 (178)
T ss_pred HHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCC-CeEecCeeEcCC--CccchhHHHHHHHHHHHHHHHHHh
Confidence 44677888999999999999999999999999999999998 888876443221 11 00 00122333
Q ss_pred C-CHHHHHHHHhcC-------------cCCCHHHHHHcCcchhccCCHhHHHH
Q 026127 158 G-SATARRDVLLRA-------------KKIKGEEALRMGLVEAAYDSEEQVAE 196 (243)
Q Consensus 158 g-~~~~a~~l~l~g-------------~~~~a~eA~~~Glv~~v~~~~~~l~~ 196 (243)
| ....+..|+-.. -.++++||++.|++|.+.++.++|..
T Consensus 125 gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll~ 177 (178)
T cd07021 125 GRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELLV 177 (178)
T ss_pred CCCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHhh
Confidence 3 244455555443 26999999999999999998776653
No 102
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.48 E-value=2.6e-13 Score=112.11 Aligned_cols=145 Identities=17% Similarity=0.208 Sum_probs=100.9
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
-+..++.++.+.++++..|+.|+ +||++..+..| ++.+++++ .+.+..+...+|||||
T Consensus 26 ~~~~~~~~l~~~l~~a~~d~~ik-~vvL~~~s~gg-~~~~~~el--------------------~~~i~~~~~~~kpVia 83 (222)
T cd07018 26 SSELSLRDLLEALEKAAEDDRIK-GIVLDLDGLSG-GLAKLEEL--------------------RQALERFRASGKPVIA 83 (222)
T ss_pred cCCccHHHHHHHHHHHhcCCCeE-EEEEECCCCCC-CHHHHHHH--------------------HHHHHHHHHhCCeEEE
Confidence 35678899999999999999999 99999987776 55544443 3344455667999999
Q ss_pred EEccccchHHHHHHHhcceeEEecCCceeeccccc------------cCcCC-------------Ch----hh---HHHH
Q 026127 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVD------------IGLTL-------------PD----YF---AALF 153 (243)
Q Consensus 106 av~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~------------~Gl~~-------------p~----~g---~~~l 153 (243)
.++| +.++|+.++++||.+++++. +.++...+. +|+.+ |. +. -..+
T Consensus 84 ~~~~-~~sggy~lasaad~I~a~p~-~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~ 161 (222)
T cd07018 84 YADG-YSQGQYYLASAADEIYLNPS-GSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQT 161 (222)
T ss_pred EeCC-CCchhhhhhhhCCEEEECCC-ceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHH
Confidence 9998 88999999999999999987 677753221 11110 00 00 0001
Q ss_pred H-----------------HHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHH
Q 026127 154 R-----------------AKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEA 197 (243)
Q Consensus 154 ~-----------------~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~ 197 (243)
. |.+. .... +-+..|..+++++|++.||||++... +++.+.
T Consensus 162 ~~~l~~~~~~f~~~Va~~R~~~-~~~~-~~~~~~~~~~~~~A~~~GLvD~i~~~-~e~~~~ 219 (222)
T cd07018 162 QALLDSLWDQYLADVAASRGLS-PDAL-EALIDLGGDSAEEALEAGLVDGLAYR-DELEAR 219 (222)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-HHHH-HHHHHcCCcHHHHHHHCCCCCcCCcH-HHHHHH
Confidence 1 1112 2222 33456999999999999999999975 666554
No 103
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.26 E-value=5.4e-10 Score=88.28 Aligned_cols=151 Identities=19% Similarity=0.244 Sum_probs=107.1
Q ss_pred EEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHH
Q 026127 11 FVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFR 90 (243)
Q Consensus 11 ~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (243)
..|.++.+ ++..+...|.+.++.++++ ..+ .|++. .=|.|+.+... .
T Consensus 2 ~vi~i~G~-------I~~~~~~~l~~~l~~A~~~-~~~-~i~l~----inSPGG~v~~~--------------------~ 48 (172)
T cd07015 2 YVAQIKGQ-------ITSYTYDQFDRYITIAEQD-NAE-AIIIE----LDTPGGRADAA--------------------G 48 (172)
T ss_pred EEEEEeeE-------ECHhHHHHHHHHHHHHhcC-CCC-eEEEE----EECCCCCHHHH--------------------H
Confidence 45666533 7777888889999998865 456 66663 34666655532 2
Q ss_pred HHHHHHhcCCCcEEEEEc---cccchHHHHHHHhcceeEEecCCceeeccccccCcCCC-----hhh----HH------H
Q 026127 91 PVVAAMMDLPMPTVAAVN---GHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLP-----DYF----AA------L 152 (243)
Q Consensus 91 ~~~~~l~~~~kp~Iaav~---G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p-----~~g----~~------~ 152 (243)
.++..|...++||++.++ |.|.++|..++++||.+++.++ +.++....-.|. .+ ... .. -
T Consensus 49 ~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~-s~iG~~~pi~~~-g~~~~~~~~~~ki~~~~~~~~r~ 126 (172)
T cd07015 49 NIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPG-TSIGACRPILGY-SQNGSIIEAPPKITNYFIAYIKS 126 (172)
T ss_pred HHHHHHHhcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCC-CEEEEccccccC-CCCCccccchHHHHHHHHHHHHH
Confidence 356667778999999999 9999999999999999999998 778765543322 12 000 11 1
Q ss_pred HHHHhC-CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHH
Q 026127 153 FRAKVG-SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAE 196 (243)
Q Consensus 153 l~~~~g-~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~ 196 (243)
+.+.-| ....+..++-....++++||+++|++|.|+.+.++|++
T Consensus 127 ~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~ll~ 171 (172)
T cd07015 127 LAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLK 171 (172)
T ss_pred HHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHHHhh
Confidence 223333 23556677777888999999999999999998777653
No 104
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.11 E-value=2.9e-11 Score=103.83 Aligned_cols=188 Identities=14% Similarity=0.082 Sum_probs=152.8
Q ss_pred cEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHHHHHHHHH
Q 026127 9 DVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARERLHYMVE 87 (243)
Q Consensus 9 ~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (243)
++..+.++ | ..|..|.++.+++..-++++..+..++ +..+|+.. +.|++|.|..+..... ..+...+.-
T Consensus 66 ~~~~~dmv-i---eav~edl~Lk~~l~~~le~v~~~~~i~-gsntSs~~~~~isa~ld~~e~vvg~-----h~fspa~~m 135 (380)
T KOG1683|consen 66 GFANADMV-I---EAVFEDLELKHELFKSLEKVEPPKCIR-GSNTSSLDINVISAGLDRPEMVVGM-----HFFSPAHWM 135 (380)
T ss_pred ccccccee-c---cchhhhHHHHHHHHHHHHhhcCCccee-eeccccCChHHHhhccCchhhhccc-----cccCHHHHH
Confidence 67777887 6 679999999999999999999998888 88888876 9999999999887642 344556677
Q ss_pred HHHHHHHHHhcCCCcEEEEEccccchHH--HHHHHhcceeEEecCC-ceeeccccccCcCCChhhHHHHHHHhCCHHHHH
Q 026127 88 SFRPVVAAMMDLPMPTVAAVNGHAAAAG--LTLALSHDYVIMRRDK-GVLYMSEVDIGLTLPDYFAALFRAKVGSATARR 164 (243)
Q Consensus 88 ~~~~~~~~l~~~~kp~Iaav~G~~~G~G--~~la~~~D~~ia~~~~-~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~ 164 (243)
.+++++.+.++++.|+.+++||.+--++ +.++.+|+|++...-. ...+..+...++..|.|-...+...+| ...+.
T Consensus 136 ~LlEii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fG-f~~g~ 214 (380)
T KOG1683|consen 136 QLLEIILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFG-FRVGE 214 (380)
T ss_pred HHHHHHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcC-ccccH
Confidence 7899999999999999999999998888 8999999999997332 333678888886578887777777777 55566
Q ss_pred HHHhcCcCCCHHHHHHcCcchhccCC-HhHHHHHHHHHHHHHhc
Q 026127 165 DVLLRAKKIKGEEALRMGLVEAAYDS-EEQVAEASMRLAKQLAG 207 (243)
Q Consensus 165 ~l~l~g~~~~a~eA~~~Glv~~v~~~-~~~l~~~a~~~a~~l~~ 207 (243)
..+-.+.-|+..||++.|+++++.+. .+++.+..+.-.+...+
T Consensus 215 ~~L~d~~gfdv~eal~~gl~~~~~~r~~eel~~~~~~g~kT~kg 258 (380)
T KOG1683|consen 215 RALADGVGFDVAEALAVGLGDEIGPRIEEELLEKGRAGIKTGKG 258 (380)
T ss_pred HHHhhccCccHHHHHhhccchhccchhHHHHHHHHhhhhhccCc
Confidence 66778999999999999999999995 56777766655444433
No 105
>PRK10949 protease 4; Provisional
Probab=99.02 E-value=5.5e-09 Score=97.78 Aligned_cols=166 Identities=20% Similarity=0.267 Sum_probs=104.4
Q ss_pred eCcEEEEEEcCCCC---CCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHH
Q 026127 7 HGDVFVLTLTGSSD---VDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLH 83 (243)
Q Consensus 7 ~~~v~~i~ln~p~~---~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 83 (243)
.+.|+.|.++.+=. ...+.++. +.+.+.++++.+|++|| +||+.-. |.|+....
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vk-aVvLrIn----SpGGs~~a--------------- 381 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVK-AIVLRVN----SPGGSVTA--------------- 381 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCc-EEEEEec----CCCCcHHH---------------
Confidence 46788888763210 01223443 56788899999999999 8888653 44443221
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeec-------ccc-----ccCcCCC-----
Q 026127 84 YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYM-------SEV-----DIGLTLP----- 146 (243)
Q Consensus 84 ~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~-------pe~-----~~Gl~~p----- 146 (243)
.+.+.+.+.++....||||+.+.|.|..||+-++++||.++|.+. +..+- |.. ++|+..-
T Consensus 382 --se~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~-t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~ 458 (618)
T PRK10949 382 --SEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPS-TLTGSIGIFGVINTVENSLDSIGVHTDGVSTS 458 (618)
T ss_pred --HHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCC-CceeeCcEEEEccCHHHHHHhcCCceeEEecc
Confidence 122344455556678999999999999999999999999999886 33331 110 1232100
Q ss_pred ------------hhhHHHH-----------H------HHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHH
Q 026127 147 ------------DYFAALF-----------R------AKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEA 197 (243)
Q Consensus 147 ------------~~g~~~l-----------~------~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~ 197 (243)
.-.-..+ . |.+. .... +-+..|+.|++++|++.||||++-.- ++..+.
T Consensus 459 ~~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~-~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~~-~~ai~~ 535 (618)
T PRK10949 459 PLADVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKT-PEQI-DKIAQGHVWTGQDAKANGLVDSLGDF-DDAVAK 535 (618)
T ss_pred ccCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-HHHH-HHHhcCCcccHHHHHHcCCCccCCCH-HHHHHH
Confidence 0000001 1 1122 2222 33568999999999999999999875 555555
Q ss_pred HHHH
Q 026127 198 SMRL 201 (243)
Q Consensus 198 a~~~ 201 (243)
+.++
T Consensus 536 a~~~ 539 (618)
T PRK10949 536 AAEL 539 (618)
T ss_pred HHHH
Confidence 5444
No 106
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=99.01 E-value=1.3e-08 Score=80.11 Aligned_cols=135 Identities=16% Similarity=0.131 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
++..+..++.+.|..++.++.++ .|++. .=|.|+++.. ...++..|...++|+++
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~-~i~l~----InSpGG~v~~--------------------~~~i~~~i~~~~~~v~~ 63 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEK-DIYLY----INSPGGDVFA--------------------GMAIYDTIKFIKADVVT 63 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCC-CEEEE----EECCCCcHHH--------------------HHHHHHHHHhcCCCceE
Confidence 66788999999999999887666 44442 2355554432 23466677778999999
Q ss_pred EEccccchHHHHHHHhcc--eeEEecCCceeeccccccCcCCChh-hHH---------------HHHHHhC-CHHHHHHH
Q 026127 106 AVNGHAAAAGLTLALSHD--YVIMRRDKGVLYMSEVDIGLTLPDY-FAA---------------LFRAKVG-SATARRDV 166 (243)
Q Consensus 106 av~G~~~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~~p~~-g~~---------------~l~~~~g-~~~~a~~l 166 (243)
.+.|.|.++|..+++++| .|++.++ +.+.+....-+. .... -.. .+.++-| .....+++
T Consensus 64 ~~~g~aaS~~~~i~~a~~~g~r~~~p~-a~~~ih~~~~~~-~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~ 141 (162)
T cd07013 64 IIDGLAASMGSVIAMAGAKGKRFILPN-AMMMIHQPWGGT-LGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHAD 141 (162)
T ss_pred EEEeehhhHHHHHHHcCCCCcEEEecC-EEEEEccCcccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 999999999999999999 6788787 667654332222 1110 011 1112222 12333445
Q ss_pred HhcCcCCCHHHHHHcCcchhc
Q 026127 167 LLRAKKIKGEEALRMGLVEAA 187 (243)
Q Consensus 167 ~l~g~~~~a~eA~~~Glv~~v 187 (243)
+-.+.-++|+||+++||||++
T Consensus 142 ~~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 142 LERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred HcCCccccHHHHHHcCCCCcC
Confidence 544555699999999999985
No 107
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.93 E-value=4.2e-08 Score=80.10 Aligned_cols=142 Identities=16% Similarity=0.168 Sum_probs=97.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCe-EEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGS-ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~-~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
++.++..++...|..++..+..+. .+.| =|.|+++.. ...++..|..++.||+
T Consensus 44 I~~~~~~~i~~~L~~l~~~~~~~~I~l~I------NSpGG~v~~--------------------g~~I~d~i~~~~~~v~ 97 (207)
T PRK12553 44 VDDASANDVMAQLLVLESIDPDRDITLYI------NSPGGSVTA--------------------GDAIYDTIQFIRPDVQ 97 (207)
T ss_pred ECHHHHHHHHHHHHHHHhCCCCCCEEEEE------eCCCCcHHH--------------------HHHHHHHHHhcCCCcE
Confidence 788999999999999987543331 3344 344554432 2346667777888999
Q ss_pred EEEccccchHHHHHHHhcc--eeEEecCCceeecccccc-C-cCCC--hhh-------------HHHHHHHhC-CHHHHH
Q 026127 105 AAVNGHAAAAGLTLALSHD--YVIMRRDKGVLYMSEVDI-G-LTLP--DYF-------------AALFRAKVG-SATARR 164 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~-G-l~~p--~~g-------------~~~l~~~~g-~~~~a~ 164 (243)
+.+.|.|.+.|..++++|| .|++.++ +.|.+..... | ..-+ +.- ...+.++-| ......
T Consensus 98 t~~~G~aaSaa~lI~~ag~~~~R~~~p~-s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~ 176 (207)
T PRK12553 98 TVCTGQAASAGAVLLAAGTPGKRFALPN-ARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIR 176 (207)
T ss_pred EEEEeehhhHHHHHHHcCCcCcEEECCC-chhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999999 5899998 7777655432 2 1000 000 112333333 134445
Q ss_pred HHHhcCcCCCHHHHHHcCcchhccCCHhHH
Q 026127 165 DVLLRAKKIKGEEALRMGLVEAAYDSEEQV 194 (243)
Q Consensus 165 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l 194 (243)
+++-.+.-++|+||+++||||+|+++.++|
T Consensus 177 ~~~~~~~~lta~EA~e~GliD~I~~~~~dl 206 (207)
T PRK12553 177 KDTDRDKWLTAEEAKDYGLVDQIITSYRDL 206 (207)
T ss_pred HHHhcCccccHHHHHHcCCccEEcCchhhc
Confidence 566678889999999999999999875544
No 108
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.92 E-value=2.2e-08 Score=81.39 Aligned_cols=138 Identities=16% Similarity=0.110 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCe-EEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGS-ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~-~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
++.++...+...+..++.++..+. .+.+. |.|+++.. ...++..|...+.|++
T Consensus 40 I~~~~~~~i~~~L~~l~~~~~~~~I~l~In------SpGG~v~~--------------------g~~I~d~i~~~~~~v~ 93 (200)
T PRK00277 40 VEDHMANLIVAQLLFLEAEDPDKDIYLYIN------SPGGSVTA--------------------GLAIYDTMQFIKPDVS 93 (200)
T ss_pred ECHHHHHHHHHHHHHhhccCCCCCEEEEEE------CCCCcHHH--------------------HHHHHHHHHhcCCCEE
Confidence 778889999999988886543331 33343 34444432 2335566777888999
Q ss_pred EEEccccchHHHHHHHhcc--eeEEecCCceeeccccccCcC--CChhh--H-----------HHHHHHhC-CHHHHHHH
Q 026127 105 AAVNGHAAAAGLTLALSHD--YVIMRRDKGVLYMSEVDIGLT--LPDYF--A-----------ALFRAKVG-SATARRDV 166 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~--~p~~g--~-----------~~l~~~~g-~~~~a~~l 166 (243)
+.+.|.|.+.|..++++++ .|++.++ +.+.+....-|.. .-+.- + ..+.++-| ......++
T Consensus 94 t~~~G~aaS~a~~I~~ag~~~~r~~~p~-s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~ 172 (200)
T PRK00277 94 TICIGQAASMGAFLLAAGAKGKRFALPN-SRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKD 172 (200)
T ss_pred EEEEeEeccHHHHHHhcCCCCCEEEcCC-ceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 9999999999999998753 5777776 5665543322210 00000 0 11223333 13344455
Q ss_pred HhcCcCCCHHHHHHcCcchhccCC
Q 026127 167 LLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 167 ~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
+-.+.-++|+||+++||||+|+.+
T Consensus 173 ~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 173 TDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred hhCCccccHHHHHHcCCccEEeec
Confidence 556677999999999999999976
No 109
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.85 E-value=1.2e-06 Score=73.57 Aligned_cols=138 Identities=21% Similarity=0.269 Sum_probs=95.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026127 24 HRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPT 103 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ 103 (243)
-.++.+-.+...+.++.+++..-+- +-++-+. +++. |.+.+ .......+.+++..+...++|+
T Consensus 77 G~~~~~g~rKa~R~~~lA~~~~lPv-V~lvDtp-Ga~~-g~~aE--------------~~G~~~~ia~~~~~~s~~~VP~ 139 (256)
T PRK12319 77 GQPHPEGYRKALRLMKQAEKFGRPV-VTFINTA-GAYP-GVGAE--------------ERGQGEAIARNLMEMSDLKVPI 139 (256)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCE-EEEEECC-CcCC-CHhHH--------------hccHHHHHHHHHHHHhCCCCCE
Confidence 3678889999999999998765553 3344333 3332 33221 1123556777888889999999
Q ss_pred EEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCc
Q 026127 104 VAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGL 183 (243)
Q Consensus 104 Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Gl 183 (243)
|+.|-|.|.|||......||++++.++ +++++ + .|.+.+..+-+.-.....+.+. ..+++.++++.|+
T Consensus 140 IsVI~G~~~gGgA~a~~~~D~v~m~~~-a~~~v------~-~pe~~a~il~~~~~~a~~aa~~----~~~~a~~l~~~g~ 207 (256)
T PRK12319 140 IAIIIGEGGSGGALALAVADQVWMLEN-TMYAV------L-SPEGFASILWKDGSRATEAAEL----MKITAGELLEMGV 207 (256)
T ss_pred EEEEeCCcCcHHHHHhhcCCEEEEecC-ceEEE------c-CHHHHHHHHhcCcccHHHHHHH----cCCCHHHHHHCCC
Confidence 999999999998888889999999998 66652 1 4555555443322212222222 2789999999999
Q ss_pred chhccCC
Q 026127 184 VEAAYDS 190 (243)
Q Consensus 184 v~~v~~~ 190 (243)
||+|++.
T Consensus 208 iD~ii~e 214 (256)
T PRK12319 208 VDKVIPE 214 (256)
T ss_pred CcEecCC
Confidence 9999975
No 110
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.85 E-value=1.8e-07 Score=75.78 Aligned_cols=143 Identities=12% Similarity=0.028 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCC-eEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~-~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
++.++...+...+..++..+..+ ..+.|- |.|+++.. ...++..|..++.||+
T Consensus 32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN------SpGG~v~a--------------------g~aI~d~i~~~~~~V~ 85 (197)
T PRK14512 32 INKDLSELFQEKILLLEALDSKKPIFVYID------SEGGDIDA--------------------GFAIFNMIRFVKPKVF 85 (197)
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE------CCCCCHHH--------------------HHHHHHHHHhCCCCEE
Confidence 77888999999998887622223 134443 45555432 2346667778899999
Q ss_pred EEEccccchHHHHHHHhcce--eEEecCCceeeccccccCcCCChhh-HH---------------HHHHHhC-CHHHHHH
Q 026127 105 AAVNGHAAAAGLTLALSHDY--VIMRRDKGVLYMSEVDIGLTLPDYF-AA---------------LFRAKVG-SATARRD 165 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~~p~~g-~~---------------~l~~~~g-~~~~a~~ 165 (243)
+.+.|.|.+.|..++++||- |++.++ +.+.+....-++ ..... .. .+..+-| ......+
T Consensus 86 t~v~G~AaSaaslIl~ag~~~~R~~~p~-s~imiHqP~~~~-~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~ 163 (197)
T PRK14512 86 TIGVGLVASAAALIFLAAKKESRFSLPN-ARYLLHQPLSGF-KGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEK 163 (197)
T ss_pred EEEEeeeHhHHHHHHhcCCcCceeECCC-CcEEEEcCcccc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 99999999999999999985 899888 666543332222 11111 00 1112222 1223344
Q ss_pred HHhcCcCCCHHHHHHcCcchhccCCHhHHHH
Q 026127 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAE 196 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~ 196 (243)
++-...-++|+||+++||+|+|+++.+++.+
T Consensus 164 ~~~~d~~lta~EA~~yGliD~I~~~~~~l~~ 194 (197)
T PRK14512 164 DTDRDFWLDSSSAVKYGLVFEVVETRLELEE 194 (197)
T ss_pred hhhcCcccCHHHHHHcCCccEeecCcHHhHh
Confidence 4444566999999999999999987566544
No 111
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.82 E-value=1e-07 Score=75.56 Aligned_cols=136 Identities=14% Similarity=0.105 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
++.+...++...+..+..++..+ .|++- .=|.|+++..- ..++..|...+.|+++
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~-~i~l~----inSpGG~v~~~--------------------~~i~~~l~~~~~~v~t 72 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKK-PIYLY----INSPGGSVTAG--------------------LAIYDTMQYIKPPVST 72 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCC-ceEEE----EECCCCCHHHH--------------------HHHHHHHHhcCCCEEE
Confidence 77888999999999999876544 33331 23445544332 2355556677999999
Q ss_pred EEccccchHHHHHHHhcc--eeEEecCCceeeccccccCcCCCh--hh-------------HHHHHHHhCC-HHHHHHHH
Q 026127 106 AVNGHAAAAGLTLALSHD--YVIMRRDKGVLYMSEVDIGLTLPD--YF-------------AALFRAKVGS-ATARRDVL 167 (243)
Q Consensus 106 av~G~~~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~~p~--~g-------------~~~l~~~~g~-~~~a~~l~ 167 (243)
.+.|.|.++|..+++++| .|++.++ +.|.+.+...+..-+. .- ...+.++.|. .....+++
T Consensus 73 ~~~g~aaS~~~~i~~~g~~~~r~~~~~-a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~ 151 (171)
T cd07017 73 ICLGLAASMGALLLAAGTKGKRYALPN-SRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDT 151 (171)
T ss_pred EEEeEehhHHHHHHHcCCCCCEEEccc-hHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 999999999999999999 7999998 7787776665542111 00 0112223331 23344556
Q ss_pred hcCcCCCHHHHHHcCcchhc
Q 026127 168 LRAKKIKGEEALRMGLVEAA 187 (243)
Q Consensus 168 l~g~~~~a~eA~~~Glv~~v 187 (243)
-.+.-++++||+++||||+|
T Consensus 152 ~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 152 DRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred hCCccccHHHHHHcCCCccC
Confidence 57777999999999999986
No 112
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.82 E-value=8.7e-08 Score=82.97 Aligned_cols=165 Identities=20% Similarity=0.165 Sum_probs=94.3
Q ss_pred eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHH
Q 026127 7 HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMV 86 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 86 (243)
.+.|+.|.++.+= ...-...+.+++...++.+..+ . .||+.- =|.|+.+.....
T Consensus 89 ~~~v~VI~~~G~I---~~~~~~~l~e~i~a~l~~A~~~---~-aVvLri----dSpGG~v~~s~~--------------- 142 (330)
T PRK11778 89 KPRLFVLDFKGDI---DASEVESLREEITAILAVAKPG---D-EVLLRL----ESPGGVVHGYGL--------------- 142 (330)
T ss_pred CCeEEEEEEEEEE---CCCcchhhHHHHHHHHHhccCC---C-eEEEEE----eCCCCchhHHHH---------------
Confidence 3679999998641 1111223345555555444433 3 555543 344554332110
Q ss_pred HHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccc------------cCcC----------
Q 026127 87 ESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVD------------IGLT---------- 144 (243)
Q Consensus 87 ~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~------------~Gl~---------- 144 (243)
....+.++....||+++.+++.|..||+.++++||.+++.+. +.++.-.+. +|+.
T Consensus 143 --a~~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~-a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK 219 (330)
T PRK11778 143 --AASQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPF-AIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYK 219 (330)
T ss_pred --HHHHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCC-CeEEeeeeeeeccCHHHHHHHCCCceEEEEecCcc
Confidence 011134456778999999999999999999999999999987 545421111 1110
Q ss_pred ---CC-----hhhHHHHH-----------HHhC--CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHH
Q 026127 145 ---LP-----DYFAALFR-----------AKVG--SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRL 201 (243)
Q Consensus 145 ---~p-----~~g~~~l~-----------~~~g--~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~ 201 (243)
-| +-+-..+. ..+- .+....+-+.+|+.|++++|++.||||++... +++...+.+.
T Consensus 220 ~a~~pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~-dd~i~~~~~~ 296 (330)
T PRK11778 220 RTLTLFGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTS-DDYLLELMKE 296 (330)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCH-HHHHHHHHhc
Confidence 00 00000011 1111 00011244678999999999999999999987 6665544443
No 113
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.77 E-value=1e-07 Score=76.34 Aligned_cols=143 Identities=17% Similarity=0.243 Sum_probs=96.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCe-EEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHH
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGS-ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFR 90 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~-~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (243)
+|.|+.| +|.++...+.+.+..+++++..+. .|.+ =|.|+++.. ..
T Consensus 18 ~i~l~g~-------I~~~~~~~~~~~L~~l~~~~~~~~i~i~I------NSpGG~v~~--------------------g~ 64 (182)
T PF00574_consen 18 IIFLNGP-------IDEESANRLISQLLYLENEDKNKPINIYI------NSPGGDVDA--------------------GL 64 (182)
T ss_dssp EEEEESS-------BSHHHHHHHHHHHHHHHHHTSSSEEEEEE------EECEBCHHH--------------------HH
T ss_pred EEEECCc-------cCHHHHHHHHHHHHHHhccCCCceEEEEE------cCCCCccHH--------------------HH
Confidence 4566655 899999999999888854433331 3333 345665543 23
Q ss_pred HHHHHHhcCCCcEEEEEccccchHHHHHHHhcce--eEEecCCceeeccccccCcCCChhhHH-----------------
Q 026127 91 PVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDY--VIMRRDKGVLYMSEVDIGLTLPDYFAA----------------- 151 (243)
Q Consensus 91 ~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~~p~~g~~----------------- 151 (243)
.++..|..++.|+++.+.|.|.+.|..++++||. |++.++ +.|.+.+...+. ++....
T Consensus 65 ~i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~-s~~m~H~p~~~~--~g~~~~l~~~~~~l~~~~~~~~~ 141 (182)
T PF00574_consen 65 AIYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPN-SRFMIHQPSTGS--GGNASELREQAKELEKLNERIAN 141 (182)
T ss_dssp HHHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT--EEEES-CEEEE--EEEHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeec-CEEEeecceeec--ccccchhHHHHHHHHHHHHHHHH
Confidence 4777788899999999999999999999999999 899998 788887776665 221110
Q ss_pred HHHHHhCC-HHHHHHHHhcCcCCCHHHHHHcCcchhccCC
Q 026127 152 LFRAKVGS-ATARRDVLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 152 ~l~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
.+.++.|. .....+++-...-++|+||+++||||+|+.+
T Consensus 142 ~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 142 IYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp HHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred HHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 11222231 2333444444455899999999999999864
No 114
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.74 E-value=2.8e-06 Score=73.09 Aligned_cols=138 Identities=16% Similarity=0.181 Sum_probs=95.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 25 RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
.++.+-.+...+.++.+++..-+- +-++-+. ++++ |.+-++ ......+.+.+..+....+|+|
T Consensus 134 ~~~p~g~rKa~Rlm~lA~~f~lPI-ItlvDTp-GA~~-G~~AE~--------------~G~~~aiar~l~~~a~~~VP~I 196 (322)
T CHL00198 134 MPSPGGYRKALRLMKHANKFGLPI-LTFIDTP-GAWA-GVKAEK--------------LGQGEAIAVNLREMFSFEVPII 196 (322)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCE-EEEEeCC-CcCc-CHHHHH--------------HhHHHHHHHHHHHHHcCCCCEE
Confidence 678899999999999998765553 3344333 3332 332211 1234566777888889999999
Q ss_pred EEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcc
Q 026127 105 AAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV 184 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv 184 (243)
++|-|.|.|||......||++++.++ ++++. ..|.+.+..+-+. ..++.+ +....+++|++++++|+|
T Consensus 197 sVViGeggsGGAlal~~aD~V~m~e~-a~~sV-------isPEg~a~Il~~d---~~~a~~-aA~~~~ita~dL~~~gii 264 (322)
T CHL00198 197 CTIIGEGGSGGALGIGIGDSIMMLEY-AVYTV-------ATPEACAAILWKD---SKKSLD-AAEALKITSEDLKVLGII 264 (322)
T ss_pred EEEeCcccHHHHHhhhcCCeEEEeCC-eEEEe-------cCHHHHHHHHhcc---hhhHHH-HHHHcCCCHHHHHhCCCC
Confidence 99999998888765566999999998 66653 1466665554332 223333 234668999999999999
Q ss_pred hhccCCH
Q 026127 185 EAAYDSE 191 (243)
Q Consensus 185 ~~v~~~~ 191 (243)
|+|+|.+
T Consensus 265 D~ii~Ep 271 (322)
T CHL00198 265 DEIIPEP 271 (322)
T ss_pred eEeccCC
Confidence 9999853
No 115
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.73 E-value=1.1e-07 Score=82.57 Aligned_cols=164 Identities=20% Similarity=0.235 Sum_probs=101.9
Q ss_pred cEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHH
Q 026127 9 DVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVES 88 (243)
Q Consensus 9 ~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (243)
.|+.|.++.+=....+....-..+.+.+.++.+..|+.++ .|++. .=|.|+....- +.
T Consensus 60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk-~vvL~----inSPGG~v~as-----------------~~ 117 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVK-AVVLR----INSPGGSVVAS-----------------EL 117 (317)
T ss_pred EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCc-eEEEE----EECcCCchhHH-----------------HH
Confidence 4777777643100111111224667778888899999999 67763 34566644321 22
Q ss_pred HHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhC----------
Q 026127 89 FRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVG---------- 158 (243)
Q Consensus 89 ~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g---------- 158 (243)
+.+.++++..-. ||++.|++.|..||+.++++||.+||.+. +..+ .+|...-......+..+.|
T Consensus 118 i~~~l~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~-si~G----SIGVi~~~~~~~~l~~k~Gv~~~~~~ag~ 191 (317)
T COG0616 118 IARALKRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPS-SITG----SIGVISGAPNFEELLEKLGVEKEVITAGE 191 (317)
T ss_pred HHHHHHHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCC-ceee----eceeEEecCCHHHHHHhcCCceeeeeccc
Confidence 344555555555 99999999999999999999999999987 6555 3332100000111222221
Q ss_pred ---------------------------------------CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHH
Q 026127 159 ---------------------------------------SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASM 199 (243)
Q Consensus 159 ---------------------------------------~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~ 199 (243)
.......-+.+|+.|++++|++.||||++... ++....+.
T Consensus 192 ~k~~~~~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~-~~av~~~~ 270 (317)
T COG0616 192 YKDILSPFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGL-DDAVKDAA 270 (317)
T ss_pred cccccCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCH-HHHHHHHH
Confidence 00111246778999999999999999999986 44444444
Q ss_pred HH
Q 026127 200 RL 201 (243)
Q Consensus 200 ~~ 201 (243)
+.
T Consensus 271 ~~ 272 (317)
T COG0616 271 EL 272 (317)
T ss_pred Hh
Confidence 43
No 116
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.67 E-value=9.9e-06 Score=69.82 Aligned_cols=137 Identities=15% Similarity=0.193 Sum_probs=94.7
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 25 RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
+++.+-.+...+.++.+++-.-+ +|-+.-.++++. |.+-++ ....+.+.+++.++....+|+|
T Consensus 131 ~~~peg~rKa~R~m~lA~~f~lP--IVtlvDTpGa~~-G~~aE~--------------~G~~~aia~~l~~~a~~~VP~I 193 (319)
T PRK05724 131 MPRPEGYRKALRLMKMAEKFGLP--IITFIDTPGAYP-GIGAEE--------------RGQSEAIARNLREMARLKVPII 193 (319)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCCCCCC-CHHHHh--------------ccHHHHHHHHHHHHhCCCCCEE
Confidence 67889999999999988876554 333333333333 432221 1235567788889999999999
Q ss_pred EEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcc
Q 026127 105 AAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV 184 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv 184 (243)
+.|-|.|.|||......||++++.++ ++++ +..|.+.+..+-+.-. .+.+.. ....+++.++++.|+|
T Consensus 194 sVIiGeg~sGGAla~~~aD~v~m~~~-A~~s-------visPEg~a~Il~~~~~---~a~~aa-e~~~ita~~l~~~g~i 261 (319)
T PRK05724 194 CTVIGEGGSGGALAIGVGDRVLMLEY-STYS-------VISPEGCASILWKDAS---KAPEAA-EAMKITAQDLKELGII 261 (319)
T ss_pred EEEeCCccHHHHHHHhccCeeeeecC-ceEe-------ecCHHHHHHHHhcCch---hHHHHH-HHcCCCHHHHHHCCCc
Confidence 99999998888766666999999998 6665 2246655555443222 233333 2556899999999999
Q ss_pred hhccCC
Q 026127 185 EAAYDS 190 (243)
Q Consensus 185 ~~v~~~ 190 (243)
|+|++.
T Consensus 262 D~II~E 267 (319)
T PRK05724 262 DEIIPE 267 (319)
T ss_pred eEeccC
Confidence 999985
No 117
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.63 E-value=1.8e-05 Score=68.13 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=93.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026127 24 HRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPT 103 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ 103 (243)
-+++.+-.+...+.++.+++-.-+- +-++-+. ++++ |.+.++ ......+.+++.++....+|+
T Consensus 130 G~~~p~g~rKa~R~m~lA~~f~iPv-VtlvDTp-Ga~~-g~~aE~--------------~G~~~aia~~l~a~s~~~VP~ 192 (316)
T TIGR00513 130 GMPAPEGYRKALRLMKMAERFKMPI-ITFIDTP-GAYP-GIGAEE--------------RGQSEAIARNLREMARLGVPV 192 (316)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCE-EEEEECC-CCCC-CHHHHH--------------HHHHHHHHHHHHHHHcCCCCE
Confidence 3678899999999999988765542 3333332 3322 332221 123456777888889999999
Q ss_pred EEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCc
Q 026127 104 VAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGL 183 (243)
Q Consensus 104 Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Gl 183 (243)
|++|-|.|.|||......||++++.++ ++++. + .|.+.+..+-+.-.....+.+ -..+++.++++.|+
T Consensus 193 IsVViGeggsGGAla~~~aD~v~m~~~-a~~sV------i-sPEg~a~Il~kd~~~a~~aae----~~~~ta~~l~~~G~ 260 (316)
T TIGR00513 193 ICTVIGEGGSGGALAIGVGDKVNMLEY-STYSV------I-SPEGCAAILWKDASKAPKAAE----AMKITAPDLKELGL 260 (316)
T ss_pred EEEEecccccHHHhhhccCCEEEEecC-ceEEe------c-CHHHHHHHhccchhhHHHHHH----HccCCHHHHHHCCC
Confidence 999999997777765557999999998 66652 2 466655544332211122222 25678999999999
Q ss_pred chhccCCH
Q 026127 184 VEAAYDSE 191 (243)
Q Consensus 184 v~~v~~~~ 191 (243)
||.|+|.+
T Consensus 261 iD~II~ep 268 (316)
T TIGR00513 261 IDSIIPEP 268 (316)
T ss_pred CeEeccCC
Confidence 99999853
No 118
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.60 E-value=2.8e-05 Score=68.82 Aligned_cols=137 Identities=18% Similarity=0.242 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 25 RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
+++.+-.+...+.++.+++..-+- +-++-.. +++ .|.+.++ ......+.+.+..+....+|+|
T Consensus 201 ~~~peGyRKAlR~mklAekf~lPI-VtLVDTp-GA~-pG~~AEe--------------~Gqa~aIAr~l~ams~l~VPiI 263 (431)
T PLN03230 201 MPQPNGYRKALRFMRHAEKFGFPI-LTFVDTP-GAY-AGIKAEE--------------LGQGEAIAFNLREMFGLRVPII 263 (431)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCE-EEEEeCC-CcC-CCHHHHH--------------HhHHHHHHHHHHHHhcCCCCEE
Confidence 678999999999999998765553 3344332 222 3332221 2234567778888999999999
Q ss_pred EEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcc
Q 026127 105 AAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV 184 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv 184 (243)
+.|-|.+.+||.....+||++++.++ ++++ +..|.+.+..+-+.-.....+.+ ...++|.++++.|+|
T Consensus 264 SVViGeGgSGGAlalg~aD~VlMle~-A~ys-------VisPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiI 331 (431)
T PLN03230 264 ATVIGEGGSGGALAIGCGNRMLMMEN-AVYY-------VASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVV 331 (431)
T ss_pred EEEeCCCCcHHHHHhhcCCEEEEecC-CEEE-------ecCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCC
Confidence 99999996666555567899999998 6554 22465555544322111222222 348999999999999
Q ss_pred hhccCC
Q 026127 185 EAAYDS 190 (243)
Q Consensus 185 ~~v~~~ 190 (243)
|+|++.
T Consensus 332 D~II~E 337 (431)
T PLN03230 332 DEIVPE 337 (431)
T ss_pred eEeccC
Confidence 999975
No 119
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.55 E-value=4.6e-06 Score=67.68 Aligned_cols=138 Identities=10% Similarity=0.032 Sum_probs=92.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCe-EEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGS-ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~-~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
+|.++..++...+-.++.++..+- .+.|- |.|+++.. ...++..|...+.||.
T Consensus 39 i~~~~a~~ii~~ll~L~~~~~~~~I~l~IN------SpGG~v~~--------------------g~aIyd~m~~~~~~V~ 92 (200)
T CHL00028 39 VDDEIANQLIGLMVYLSIEDDTKDLYLFIN------SPGGSVIS--------------------GLAIYDTMQFVKPDVH 92 (200)
T ss_pred ecHHHHHHHHHHHHHHhccCCCCCEEEEEe------CCCcchhh--------------------HHHHHHHHHhcCCCEE
Confidence 889999999999999885433231 33443 44444332 1346777888999999
Q ss_pred EEEccccchHHHHHHHhcc--eeEEecCCceeeccccccCcCCChhh-H---------------HHHHHHhC-CHHHHHH
Q 026127 105 AAVNGHAAAAGLTLALSHD--YVIMRRDKGVLYMSEVDIGLTLPDYF-A---------------ALFRAKVG-SATARRD 165 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~~p~~g-~---------------~~l~~~~g-~~~~a~~ 165 (243)
..+.|.|.+.|..|++++| .|++.++ ++|.+.....|....... . ..+.++-| ......+
T Consensus 93 Tv~~G~AaS~aslIl~aG~kg~R~~~p~-s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~ 171 (200)
T CHL00028 93 TICLGLAASMASFILAGGEITKRLAFPH-ARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISE 171 (200)
T ss_pred EEEEEehHHHHHHHHhCCCCCCEEecCC-CeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 9999999999999999999 6999998 778776655442111110 0 01112222 1122234
Q ss_pred HHhcCcCCCHHHHHHcCcchhccCC
Q 026127 166 VLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
++-...-++|+||+++||||+|+.+
T Consensus 172 ~~~r~~~lta~EA~eyGliD~I~~~ 196 (200)
T CHL00028 172 DMERDVFMSATEAKAYGIVDLVAVN 196 (200)
T ss_pred HhhcCccCCHHHHHHcCCCcEEeec
Confidence 4444555999999999999999976
No 120
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.54 E-value=3e-05 Score=72.74 Aligned_cols=137 Identities=17% Similarity=0.214 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 25 RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
+.+.+-.+...+.++.++...-+- +-++-+.| ++. |...++ ......+.+.+.++....+|+|
T Consensus 222 ~~~peGyRKAlRlmkLAekfgLPI-VtLVDTpG-A~p-G~~AEe--------------~Gq~~aIArnl~amasl~VP~I 284 (762)
T PLN03229 222 MPTPHGYRKALRMMYYADHHGFPI-VTFIDTPG-AYA-DLKSEE--------------LGQGEAIAHNLRTMFGLKVPIV 284 (762)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCE-EEEEECCC-cCC-CchhHH--------------HhHHHHHHHHHHHHhCCCCCEE
Confidence 677888899999998888765553 44443333 332 332222 1235567788888899999999
Q ss_pred EEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcc
Q 026127 105 AAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV 184 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv 184 (243)
++|-|.|.|||......||++++.++ +++++ ..|.+++..+-+--. ++.+ +.....++|++.+++|+|
T Consensus 285 SVViGeggSGGAlA~g~aD~VlMle~-A~~sV-------isPEgaAsILwkd~~---~A~e-AAe~lkiTa~dL~~lGii 352 (762)
T PLN03229 285 SIVIGEGGSGGALAIGCANKLLMLEN-AVFYV-------ASPEACAAILWKSAK---AAPK-AAEKLRITAQELCRLQIA 352 (762)
T ss_pred EEEeCCcchHHHHHhhcCCEEEEecC-CeEEe-------cCHHHHHHHHhcCcc---cHHH-HHHHcCCCHHHHHhCCCC
Confidence 99999998888887788999999998 65542 246665555433322 2222 335668999999999999
Q ss_pred hhccCC
Q 026127 185 EAAYDS 190 (243)
Q Consensus 185 ~~v~~~ 190 (243)
|+|+|.
T Consensus 353 D~IIpE 358 (762)
T PLN03229 353 DGIIPE 358 (762)
T ss_pred eeeccC
Confidence 999985
No 121
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.53 E-value=3.7e-06 Score=67.86 Aligned_cols=138 Identities=16% Similarity=0.111 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
++.++..++...+..++.++..+ -|.+. .-|.|+++..- ..++..|..++.|+..
T Consensus 35 I~~~~~~~ii~~L~~l~~~~~~~-~i~l~----InSpGG~v~~g--------------------~~I~d~l~~~~~~v~t 89 (191)
T TIGR00493 35 VNDSVANLIVAQLLFLEAEDPEK-DIYLY----INSPGGSITAG--------------------LAIYDTMQFIKPDVST 89 (191)
T ss_pred EChHHHHHHHHHHHHhhccCCCC-CEEEE----EECCCCCHHHH--------------------HHHHHHHHhcCCCEEE
Confidence 67788888999888888755444 33331 13445554321 2355566667778888
Q ss_pred EEccccchHHHHHHHhcc--eeEEecCCceeeccccccCcC--CChhh--H-----------HHHHHHhC-CHHHHHHHH
Q 026127 106 AVNGHAAAAGLTLALSHD--YVIMRRDKGVLYMSEVDIGLT--LPDYF--A-----------ALFRAKVG-SATARRDVL 167 (243)
Q Consensus 106 av~G~~~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~--~p~~g--~-----------~~l~~~~g-~~~~a~~l~ 167 (243)
.+.|.|.+.|..+++++| .|++.++ +.+.+.+..-|.. ..+.- . ..+.++-| ......+++
T Consensus 90 ~~~G~AaSaaslI~~aG~~~~r~~~p~-s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~ 168 (191)
T TIGR00493 90 ICIGQAASMGAFLLSAGAKGKRFSLPN-SRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDT 168 (191)
T ss_pred EEEEeeccHHHHHHhcCCCCcEEecCC-ceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence 888999999999988765 6999998 7787755433320 11111 0 11223333 134445556
Q ss_pred hcCcCCCHHHHHHcCcchhccC
Q 026127 168 LRAKKIKGEEALRMGLVEAAYD 189 (243)
Q Consensus 168 l~g~~~~a~eA~~~Glv~~v~~ 189 (243)
-.+.-++|+||+++||+|+|+.
T Consensus 169 ~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 169 ERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred hCCccCcHHHHHHcCCccEEec
Confidence 6667799999999999999875
No 122
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.35 E-value=2.7e-05 Score=62.93 Aligned_cols=138 Identities=16% Similarity=0.083 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCe-EEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGS-ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~-~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
++.++..++...|..++.+...+- .+.| -|.|+++.. ...++..|...+.||.
T Consensus 34 i~~~~a~~ii~~Ll~l~~~~~~~~I~l~I------NSpGG~v~~--------------------g~aIyd~m~~~~~~V~ 87 (196)
T PRK12551 34 VTSDSANRIVAQLLFLEAEDPEKDIYLYI------NSPGGSVYD--------------------GLGIFDTMQHVKPDVH 87 (196)
T ss_pred ecHHHHHHHHHHHHHhhccCCCCCEEEEE------eCCCcchhh--------------------HHHHHHHHHhcCCCEE
Confidence 788999999999998885432231 3333 344554432 1246667778889999
Q ss_pred EEEccccchHHHHHHHhcce--eEEecCCceeeccccccCcC--CChhh--HH-----------HHHHHhCC-HHHHHHH
Q 026127 105 AAVNGHAAAAGLTLALSHDY--VIMRRDKGVLYMSEVDIGLT--LPDYF--AA-----------LFRAKVGS-ATARRDV 166 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~--~p~~g--~~-----------~l~~~~g~-~~~a~~l 166 (243)
..+.|.|.+.|..|++++|. |++.++ +++.+....-|.. ..+.- .. .+.++-|. .....++
T Consensus 88 t~~~G~AaS~AslIl~aG~~~~R~~~p~-a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~ 166 (196)
T PRK12551 88 TVCVGLAASMGAFLLCAGAKGKRSSLQH-SRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQED 166 (196)
T ss_pred EEEEEEehhHHHHHHhCCCCCceecCCC-CEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999985 888888 7776555432220 11110 00 12223331 1222344
Q ss_pred HhcCcCCCHHHHHHcCcchhccCC
Q 026127 167 LLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 167 ~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
+-...-++|+||+++||||+|+++
T Consensus 167 ~~rd~~msa~EA~eyGliD~I~~~ 190 (196)
T PRK12551 167 TDRDFFMSPSEAVEYGLIDLVIDK 190 (196)
T ss_pred hhcCcCCCHHHHHHcCCCcEEecc
Confidence 444455999999999999999975
No 123
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=98.31 E-value=2.9e-07 Score=71.74 Aligned_cols=101 Identities=17% Similarity=0.219 Sum_probs=62.1
Q ss_pred hcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccc------------cCcC-------------CCh--h-
Q 026127 97 MDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVD------------IGLT-------------LPD--Y- 148 (243)
Q Consensus 97 ~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~------------~Gl~-------------~p~--~- 148 (243)
.+..|||+|.++|.+..+++.++.+||-+++.+. +.++...+. +|+- .|. .
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~-s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPS-SSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT--EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred cccCCeEEEEECCcchhHHHHHHHcCCEEEecCC-CEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 4679999999999999999999999999999886 444432111 1110 010 0
Q ss_pred --hHHHHHH-----------------HhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHH
Q 026127 149 --FAALFRA-----------------KVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRL 201 (243)
Q Consensus 149 --g~~~l~~-----------------~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~ 201 (243)
.-..+.+ .+. ... .+-+..|..|++++|++.||||++-.. +++.+.+.+.
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~-~~~-v~~~~~~~~~~~~~A~~~GLiD~i~~~-~~~~~~l~~~ 150 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLS-PDD-VEEIADGGVFTAQQALELGLIDEIGTF-DEAIARLAKL 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHH-HHCHHCCHEEEHHHHHHTTSSSEETSH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCC-HHH-HHHHHhhccccHHHHHHcCchhhcCCH-HHHHHHHHHH
Confidence 0001111 111 112 233578999999999999999999875 6666665544
No 124
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.30 E-value=3e-05 Score=63.72 Aligned_cols=137 Identities=10% Similarity=0.005 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCC-eEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~-~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
+|.++...+...+..++..+.-+ ..+.|-+ .|+++.. ...++..|...+.||.
T Consensus 63 Idd~~a~~i~aqLl~L~~~~~~~~I~lyINS------pGGsv~a--------------------GlaIyd~m~~~~~~V~ 116 (221)
T PRK14514 63 IDDYTANTIQAQLLYLDSVDPGKDISIYINS------PGGSVYA--------------------GLGIYDTMQFISSDVA 116 (221)
T ss_pred EcHHHHHHHHHHHHHHhccCCCCCEEEEEEC------CCcchhh--------------------HHHHHHHHHhcCCCEE
Confidence 67888888888777776432212 0344433 3443322 1236677788899999
Q ss_pred EEEccccchHHHHHHHhcce--eEEecCCceeeccccccCcCCChhh-H----H-----------HHHHHhC-CHHHHHH
Q 026127 105 AAVNGHAAAAGLTLALSHDY--VIMRRDKGVLYMSEVDIGLTLPDYF-A----A-----------LFRAKVG-SATARRD 165 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~~p~~g-~----~-----------~l~~~~g-~~~~a~~ 165 (243)
..+.|.|.+.|..|++++|. |++.++ +.+.+....-|. ..... . . .+.++-| ......+
T Consensus 117 tv~~G~AAS~AslIl~aG~~gkR~~~pn-a~iMiHqP~~~~-~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~ 194 (221)
T PRK14514 117 TICTGMAASMASVLLVAGTKGKRSALPH-SRVMIHQPLGGA-QGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWA 194 (221)
T ss_pred EEEEEEehhHHHHHHhcCCCCceeeCCC-CEEEeccCCccc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999999996 889998 777655543332 11111 0 0 0112233 1122234
Q ss_pred HHhcCcCCCHHHHHHcCcchhccCC
Q 026127 166 VLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
++-...-++|+||+++||||+|+..
T Consensus 195 ~~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 195 DSDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred HhhcCccCCHHHHHHcCCccEEeec
Confidence 4444555999999999999999864
No 125
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=98.26 E-value=0.00037 Score=59.11 Aligned_cols=138 Identities=20% Similarity=0.232 Sum_probs=85.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-----cCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHh
Q 026127 23 EHRFGPPAIDSILSAIAKAKA-----EATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMM 97 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~-----d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 97 (243)
.-++....-+.+..+++.+.+ .+-+ +|.+..+|+ ..+.+-. ..+..+.+.+.. +..+.
T Consensus 72 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~P--vV~l~dSgG-----aRlqEg~---------~~L~~~a~i~~~-~~~ls 134 (274)
T TIGR03133 72 GGSVGEVHGAKIVGALRLAIEDNRKGQPTA--VVLLLDTGG-----VRLQEAN---------AGLIAIAEIMRA-ILDAR 134 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHhhhhccCCCC--EEEEEcCCC-----cChhhhH---------HHHHHHHHHHHH-HHHHh
Confidence 457888888999999988876 2222 444443332 3332211 111122222222 33344
Q ss_pred cCCCcEEEEEccc--cchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCC-HHHHHHHHhcCcCCC
Q 026127 98 DLPMPTVAAVNGH--AAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGS-ATARRDVLLRAKKIK 174 (243)
Q Consensus 98 ~~~kp~Iaav~G~--~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~-~~~a~~l~l~g~~~~ 174 (243)
.. .|+|+.+-|+ |.||+..++.+||++|++++ ++++ +.-|.. +....|. .-..++-.+..+.+.
T Consensus 135 ~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~-a~i~-------~aGP~V----Ie~~~G~e~~~~~d~~l~~~~lG 201 (274)
T TIGR03133 135 AA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEE-GRLG-------LSGPEV----IEQEAGVEEFDSRDRALVWRTTG 201 (274)
T ss_pred CC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCC-cEEe-------ccCHHH----HHHhcCCCccCHHHhcccccccc
Confidence 44 9999999999 89999999999999999987 6554 322332 2223331 011233344556677
Q ss_pred HHHHHHcCcchhccCC
Q 026127 175 GEEALRMGLVEAAYDS 190 (243)
Q Consensus 175 a~eA~~~Glv~~v~~~ 190 (243)
+......|++|.++++
T Consensus 202 G~~~~~sG~~D~~v~d 217 (274)
T TIGR03133 202 GKHRFLSGDADVLVED 217 (274)
T ss_pred hHhHhhcccceEEeCC
Confidence 7788889999999987
No 126
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=98.20 E-value=0.00035 Score=59.89 Aligned_cols=165 Identities=15% Similarity=0.187 Sum_probs=101.3
Q ss_pred eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHH
Q 026127 7 HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMV 86 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 86 (243)
++.-..|.-|.+. -..-+++....+.+.++++.+.+..-+ +|.+...|+ ....+ . ...+.+..
T Consensus 119 ~G~~V~v~a~D~~-f~gGS~g~~~~eKi~r~~e~A~~~~lP--lV~l~dsgG-----armqE---g------i~sL~~~a 181 (292)
T PRK05654 119 EGMPVVLAVMDFS-FMGGSMGSVVGEKIVRAVERAIEEKCP--LVIFSASGG-----ARMQE---G------LLSLMQMA 181 (292)
T ss_pred CCEEEEEEEEecc-cccCCccHHHHHHHHHHHHHHHHcCCC--EEEEEcCCC-----cchhh---h------hhHHHhHH
Confidence 4433444455552 124689999999999999999877554 455554442 22221 1 11111111
Q ss_pred HHHHHHHHHHhcCCCcEEEEEccccchHHH-HHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHH
Q 026127 87 ESFRPVVAAMMDLPMPTVAAVNGHAAAAGL-TLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165 (243)
Q Consensus 87 ~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~-~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~ 165 (243)
.....+.++.....|.|+++-|+|.||+. .+++.+|++++.++ +.+++ .-|. .+.+.++ ..
T Consensus 182 -k~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~-A~ig~-------aGpr----vie~~~~-e~---- 243 (292)
T PRK05654 182 -KTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPK-ALIGF-------AGPR----VIEQTVR-EK---- 243 (292)
T ss_pred -HHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecC-cEEEe-------cCHH----HHHhhhh-hh----
Confidence 22334445567789999999999999965 56778999999876 65543 2232 1222222 11
Q ss_pred HHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCC
Q 026127 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRK 209 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~ 209 (243)
+ .-+.=+++-+.+.|+||.|+++ .++.+...++.+.+...+
T Consensus 244 l--pe~~~~ae~~~~~G~vD~Vv~~-~e~r~~l~~~L~~~~~~~ 284 (292)
T PRK05654 244 L--PEGFQRAEFLLEHGAIDMIVHR-RELRDTLASLLALHTKQP 284 (292)
T ss_pred h--hhhhcCHHHHHhCCCCcEEECH-HHHHHHHHHHHHHHhcCC
Confidence 1 1112256777899999999998 788888888877765543
No 127
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=98.19 E-value=0.00029 Score=58.64 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=89.2
Q ss_pred CcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHH-HhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHH
Q 026127 8 GDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKA-KAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMV 86 (243)
Q Consensus 8 ~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~-~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 86 (243)
+.-..|.=|.| . ..++.+-.......+... +.+..+= +|.+.-. +.|-.|..-+ .....
T Consensus 31 G~~V~vIa~~~---~-~~~g~~~~~k~A~~v~~~~d~~f~~P-Iv~lvDt-pG~~~g~~aE--------------~~G~~ 90 (238)
T TIGR03134 31 GGKVTVIGVVP---D-AEVGLDEALALAQAVLDVIEADDKRP-IVVLVDT-PSQAYGRREE--------------LLGIN 90 (238)
T ss_pred CEEEEEEEECC---C-CcCChHHHHHHHHHHHHHHHhcCCCC-EEEEEeC-CCCCCCHHHH--------------HHHHH
Confidence 43334444445 2 268877777888888775 4445543 4444332 3344444222 22334
Q ss_pred HHHHHHHHHHh---cCCCcEEEEEccccchHHHH-HHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHH
Q 026127 87 ESFRPVVAAMM---DLPMPTVAAVNGHAAAAGLT-LALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATA 162 (243)
Q Consensus 87 ~~~~~~~~~l~---~~~kp~Iaav~G~~~G~G~~-la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~ 162 (243)
..+.+++.++. ..+.|+|+.|-|.+.|||+. +.+.+|.++|.++ +.++ ...|...+..+-+-.. .
T Consensus 91 ~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~-A~i~-------vm~~e~aa~I~~~~~~---~ 159 (238)
T TIGR03134 91 QALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPG-AMVH-------VMDLESMARVTKRSVE---E 159 (238)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCC-cEEE-------ecCHHHHHHHHccCHh---H
Confidence 44455555555 55699999999999998874 4334788888877 5554 3134443333332222 2
Q ss_pred HHHHHhcC--cCCCHHHHHHcCcchhccCCHh
Q 026127 163 RRDVLLRA--KKIKGEEALRMGLVEAAYDSEE 192 (243)
Q Consensus 163 a~~l~l~g--~~~~a~eA~~~Glv~~v~~~~~ 192 (243)
+.++.-.- ...+.+.+.++|+||.|++..+
T Consensus 160 ~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 160 LEALAKSSPVFAPGIENFVKLGGVHALLDVAD 191 (238)
T ss_pred HHHHHHhhhhhccCHHHHHhCCCccEEeCCCC
Confidence 33333221 2467788999999999998633
No 128
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.16 E-value=6.8e-05 Score=60.78 Aligned_cols=139 Identities=13% Similarity=0.169 Sum_probs=89.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCC-eEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026127 25 RFGPPAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPT 103 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~d~~v~-~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ 103 (243)
.++.++...+...+-.++..+.-+ ..+.|- |.|+|+.. ...++..|...+-||
T Consensus 35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~IN------SpGG~v~~--------------------GlaIyd~m~~~~~~V 88 (201)
T PRK14513 35 PIESQMANTIVAQLLLLDSQNPEQEIQMYIN------CPGGEVYA--------------------GLAIYDTMRYIKAPV 88 (201)
T ss_pred EEcHHHHHHHHHHHHHhhccCCCCCEEEEEE------CCCCchhh--------------------HHHHHHHHHhcCCCE
Confidence 378888888888887777533212 134443 44454432 134677778889999
Q ss_pred EEEEccccchHHHHHHHhcce--eEEecCCceeeccccccCcC--CChhhH-------------HHHHHHhC-CHHHHHH
Q 026127 104 VAAVNGHAAAAGLTLALSHDY--VIMRRDKGVLYMSEVDIGLT--LPDYFA-------------ALFRAKVG-SATARRD 165 (243)
Q Consensus 104 Iaav~G~~~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~--~p~~g~-------------~~l~~~~g-~~~~a~~ 165 (243)
...+.|.|.+.|..|++++|- |++.++ +++-+.....|.. .++.-. ..+.++-| ......+
T Consensus 89 ~Ti~~G~AaS~As~il~aG~kgkR~~~pn-a~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~ 167 (201)
T PRK14513 89 STICVGIAMSMGSVLLMAGDKGKRMALPN-SRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLR 167 (201)
T ss_pred EEEEEeeehhhHHHHHhcCCCCcEEecCC-eEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999999999995 899998 7776655543431 111100 01112223 0122234
Q ss_pred HHhcCcCCCHHHHHHcCcchhccCC
Q 026127 166 VLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
++-...-++|+||+++||||+|+++
T Consensus 168 ~~~rd~~msa~EA~eyGliD~I~~~ 192 (201)
T PRK14513 168 DMERDYFMSPEEAKAYGLIDSVIEP 192 (201)
T ss_pred HhccCcccCHHHHHHcCCCcEEecc
Confidence 4444455999999999999999975
No 129
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.15 E-value=0.00031 Score=59.96 Aligned_cols=147 Identities=17% Similarity=0.224 Sum_probs=94.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 102 (243)
.-+++....+.+.++++.+.+..-+ +|.++..|++ -. ++. ...+.+.. .....+.++.....|
T Consensus 133 gGSmg~~~geKi~r~~e~A~~~~lP--lV~l~dSgGa-----Rm---qEg------~~sL~~~a-k~~~~~~~~~~~~vP 195 (285)
T TIGR00515 133 GGSMGSVVGEKFVRAIEKALEDNCP--LIIFSASGGA-----RM---QEA------LLSLMQMA-KTSAALAKMSERGLP 195 (285)
T ss_pred CCCccHHHHHHHHHHHHHHHHcCCC--EEEEEcCCCc-----cc---ccc------hhHHHhHH-HHHHHHHHHHcCCCC
Confidence 4589999999999999999876554 5555554433 11 111 11111222 122344456677899
Q ss_pred EEEEEccccchHHH-HHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCC-CHHHHHH
Q 026127 103 TVAAVNGHAAAAGL-TLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKI-KGEEALR 180 (243)
Q Consensus 103 ~Iaav~G~~~G~G~-~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~-~a~eA~~ 180 (243)
.|+++-|+|.||+. .+++.+|++++.++ +.+++ .-|. .+.+.++ ... . +.+ +++-+.+
T Consensus 196 ~IsVv~gpt~GG~aas~a~~~D~iia~p~-A~ig~-------aGpr----Vie~ti~-e~l------p-e~~q~ae~~~~ 255 (285)
T TIGR00515 196 YISVLTDPTTGGVSASFAMLGDLNIAEPK-ALIGF-------AGPR----VIEQTVR-EKL------P-EGFQTSEFLLE 255 (285)
T ss_pred EEEEEeCCcchHHHHHHHhCCCEEEEECC-eEEEc-------CCHH----HHHHHhc-Ccc------c-hhcCCHHHHHh
Confidence 99999999999965 56679999999887 65543 2232 1223333 111 1 223 5666778
Q ss_pred cCcchhccCCHhHHHHHHHHHHHHHhc
Q 026127 181 MGLVEAAYDSEEQVAEASMRLAKQLAG 207 (243)
Q Consensus 181 ~Glv~~v~~~~~~l~~~a~~~a~~l~~ 207 (243)
.|+||.|+++ .++.+...++.+.+..
T Consensus 256 ~G~vD~iv~~-~~~r~~l~~~L~~~~~ 281 (285)
T TIGR00515 256 HGAIDMIVHR-PEMKKTLASLLAKLQN 281 (285)
T ss_pred CCCCcEEECc-HHHHHHHHHHHHHHhh
Confidence 9999999998 7788777777765543
No 130
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.09 E-value=3.6e-05 Score=72.28 Aligned_cols=84 Identities=18% Similarity=0.162 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc
Q 026127 29 PAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVN 108 (243)
Q Consensus 29 ~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~ 108 (243)
..+.++.++++++.+|+.|+ .||+.-.. +.|..+..+. .+.+.+..+....|||||..+
T Consensus 76 ~~l~~i~~~i~~A~~D~~Ik-gIvL~i~~---~~g~~~~~~~-----------------ei~~ai~~fk~sgKpVvA~~~ 134 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIE-GLVFDLSN---FSGWDSPHLV-----------------EIGSALSEFKDSGKPVYAYGT 134 (584)
T ss_pred cCHHHHHHHHHHHhcCCCce-EEEEEccC---CCCCCHHHHH-----------------HHHHHHHHHHhcCCeEEEEEc
Confidence 35789999999999999999 88887642 2244333221 234445555667999999888
Q ss_pred cccchHHHHHHHhcceeEEecCCceee
Q 026127 109 GHAAAAGLTLALSHDYVIMRRDKGVLY 135 (243)
Q Consensus 109 G~~~G~G~~la~~~D~~ia~~~~~~f~ 135 (243)
+.+ -+|+-++.+||-+++.+. +.++
T Consensus 135 ~~~-s~~YylAs~AD~I~~~p~-G~v~ 159 (584)
T TIGR00705 135 NYS-QGQYYLASFADEIILNPM-GSVD 159 (584)
T ss_pred ccc-chhhhhhhhCCEEEECCC-ceEE
Confidence 775 678999999999999986 4443
No 131
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.00017 Score=64.24 Aligned_cols=158 Identities=21% Similarity=0.331 Sum_probs=110.2
Q ss_pred eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHH
Q 026127 7 HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMV 86 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 86 (243)
++.|..+.++.. ++..+...+.+.++.++++..- ++|+.=+ ..|+ ..
T Consensus 25 ~~~v~vi~i~g~-------I~~~s~~~l~r~l~~A~~~~a~--~vvl~ld----TPGG--------------------l~ 71 (436)
T COG1030 25 EKKVYVIEIDGA-------IDPASADYLQRALQSAEEENAA--AVVLELD----TPGG--------------------LL 71 (436)
T ss_pred CCeEEEEEecCc-------cCHHHHHHHHHHHHHHHhCCCc--EEEEEec----CCCc--------------------hH
Confidence 456788888754 9999999999999999987642 4444211 1122 23
Q ss_pred HHHHHHHHHHhcCCCcEEEEEc---cccchHHHHHHHhcceeEEecCCceeecc-ccccCcCCC-hhh-H-H------HH
Q 026127 87 ESFRPVVAAMMDLPMPTVAAVN---GHAAAAGLTLALSHDYVIMRRDKGVLYMS-EVDIGLTLP-DYF-A-A------LF 153 (243)
Q Consensus 87 ~~~~~~~~~l~~~~kp~Iaav~---G~~~G~G~~la~~~D~~ia~~~~~~f~~p-e~~~Gl~~p-~~g-~-~------~l 153 (243)
+.++++++++.+.|.|++..+. +.|..+|.-++++||+..+++. +.++-. .+..|-+.+ ... . . -+
T Consensus 72 ~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPg-T~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~ 150 (436)
T COG1030 72 DSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPG-TNIGAATPIAGGGTSAKEANTTNAAVAYIRSL 150 (436)
T ss_pred HHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCC-CcccccceecCCCCCccchhhHHHHHHHHHHH
Confidence 4567899999999999888885 4699999999999999999998 666532 222331111 111 0 1 12
Q ss_pred HHHhC-CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHH
Q 026127 154 RAKVG-SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEAS 198 (243)
Q Consensus 154 ~~~~g-~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a 198 (243)
.+.-| +...+.+++.-...++++||++.|++|-+..+..|+....
T Consensus 151 A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~~~ 196 (436)
T COG1030 151 AEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLKKL 196 (436)
T ss_pred HHHcCCChHHHHHHhhhccCCChhHHHhcCccccccCCHHHHHHHc
Confidence 22323 3566778888899999999999999999998855554443
No 132
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=98.07 E-value=0.0011 Score=56.86 Aligned_cols=140 Identities=20% Similarity=0.266 Sum_probs=81.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcC----CCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhc
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEA----TPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMD 98 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~----~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 98 (243)
.-++.....+.+..+++.+.++. .+- +|++..+|+ ..+.+-. ..+..+.+.+.. +..+..
T Consensus 81 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~P-vV~l~dSGG-----aRlqEg~---------~~L~~~a~i~~~-~~~ls~ 144 (301)
T PRK07189 81 GGSVGEVHGAKLAGALELAAEDNRNGIPTA-VLLLFETGG-----VRLQEAN---------AGLAAIAEIMRA-IVDLRA 144 (301)
T ss_pred CcCcCHHHHHHHHHHHHHHHHhCCCCCCCC-EEEEecCCC-----cCccchH---------HHHHHHHHHHHH-HHHHhC
Confidence 45888999999999999988765 123 444444333 2232211 111122222222 233344
Q ss_pred CCCcEEEEEccc--cchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCC-HHHHHHHHhcCcCCCH
Q 026127 99 LPMPTVAAVNGH--AAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGS-ATARRDVLLRAKKIKG 175 (243)
Q Consensus 99 ~~kp~Iaav~G~--~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~-~~~a~~l~l~g~~~~a 175 (243)
. +|+|+.+-|+ |+||+...+.+||++|++++ ++++ +.-|.. +....|. .-..++--+-.+.+.+
T Consensus 145 ~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~-a~ig-------laGP~V----Ie~~~G~e~~d~~d~~~vw~~lGG 211 (301)
T PRK07189 145 A-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEE-GRLG-------LSGPEV----IEQEAGVEEFDSRDRALVWRTTGG 211 (301)
T ss_pred C-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECC-cEEe-------ccCHHH----HHHhcCCcccCHHHhcccccccCc
Confidence 4 9999999999 99999999999999999987 6554 322322 1222220 0111221222222333
Q ss_pred HHHHHcCcchhccCCH
Q 026127 176 EEALRMGLVEAAYDSE 191 (243)
Q Consensus 176 ~eA~~~Glv~~v~~~~ 191 (243)
......|.+|.++++.
T Consensus 212 ~h~~~sG~~D~~v~dd 227 (301)
T PRK07189 212 KHRYLSGLADALVDDD 227 (301)
T ss_pred ceeeecccceEEeCCH
Confidence 4555699999999873
No 133
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.02 E-value=4.2e-05 Score=64.04 Aligned_cols=96 Identities=23% Similarity=0.224 Sum_probs=77.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026127 24 HRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPT 103 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ 103 (243)
+-++.+..+++.++++...++..+ .+++ -+.|+++.. -.++.+.+.+++.|+
T Consensus 70 ~~I~i~dse~v~raI~~~~~~~~I--dLii------~TpGG~v~A--------------------A~~I~~~l~~~~~~v 121 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKDKPI--DLII------HTPGGLVDA--------------------AEQIARALREHPAKV 121 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCCCce--EEEE------ECCCCcHHH--------------------HHHHHHHHHhCCCCE
Confidence 458888999999999988876654 3444 245554442 234667788899999
Q ss_pred EEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh
Q 026127 104 VAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF 149 (243)
Q Consensus 104 Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g 149 (243)
++.|+..|..+|..++++||-+|+.++ +.++--+.++|- .|..+
T Consensus 122 ~v~VP~~A~SAGTlIALaADeIvM~p~-a~LGpiDPqi~~-~pA~s 165 (285)
T PF01972_consen 122 TVIVPHYAMSAGTLIALAADEIVMGPG-AVLGPIDPQIGQ-YPAAS 165 (285)
T ss_pred EEEECcccccHHHHHHHhCCeEEECCC-CccCCCCccccC-CChHH
Confidence 999999999999999999999999998 789988889998 68655
No 134
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=98.01 E-value=0.001 Score=61.55 Aligned_cols=174 Identities=15% Similarity=0.107 Sum_probs=106.9
Q ss_pred eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHH
Q 026127 7 HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMV 86 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 86 (243)
+|.-.-|.-|+|. ...-+++.+..+...+.++.+++..-+ +|.+...++ |..|.+-+ .....
T Consensus 313 ~G~~V~vvAnd~~-~~~G~~~~~~~~K~~r~i~~a~~~~lP--lV~lvDs~G-~~~g~~~E--------------~~g~~ 374 (512)
T TIGR01117 313 NGQSVGIIANQPK-VMAGCLDIDSSDKIARFIRFCDAFNIP--IVTFVDVPG-FLPGVNQE--------------YGGII 374 (512)
T ss_pred CCEEEEEEEeccc-cccCCCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCcC-ccccHHHH--------------HHHHH
Confidence 3433445555552 123479999999999999998876554 344433322 55554322 22234
Q ss_pred HHHHHHHHHHhcCCCcEEEEEccccchHHHHHHH----hcceeEEecCCceeeccccccCcCCChhhHHHHHH-Hh---C
Q 026127 87 ESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLAL----SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRA-KV---G 158 (243)
Q Consensus 87 ~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~-~~---g 158 (243)
....+++.++.+..+|.|+.|-|.+.|+|+.-+. .+|++++.++ +.++ +..|...+..+.+ .+ .
T Consensus 375 ~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~-a~~~-------v~~pe~a~~i~~~~~l~~~~ 446 (512)
T TIGR01117 375 RHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPT-AEIA-------VMGPAGAANIIFRKDIKEAK 446 (512)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCC-CeEe-------ecCHHHHHHHHhhhhccccc
Confidence 4566778888899999999999999888664443 2899999888 6554 3234444433322 11 1
Q ss_pred CHHHHHHHH---hcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhc
Q 026127 159 SATARRDVL---LRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207 (243)
Q Consensus 159 ~~~~a~~l~---l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~ 207 (243)
....++... ..-+..++..+.+.|+||.|+++ .+.........+.+..
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~a~~g~vD~VI~P-~~tR~~l~~~l~~~~~ 497 (512)
T TIGR01117 447 DPAATRKQKIAEYREEFANPYKAAARGYVDDVIEP-KQTRPKIVNALAMLES 497 (512)
T ss_pred CHHHHHHHHHHHHHHhhcCHHHHHhcCCCCeeECh-HHHHHHHHHHHHHHhc
Confidence 011111111 12234578899999999999998 6676666666555443
No 135
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.91 E-value=0.0023 Score=54.72 Aligned_cols=146 Identities=12% Similarity=0.098 Sum_probs=86.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 102 (243)
.-++....-+.+.++++.+.+..-+ +|+++.+|+. .+.+-. ..+.++.+....+......-..|
T Consensus 146 gGSmG~v~geKi~ra~e~A~~~rlP--lV~l~~SGGA-----RmQEg~---------~sL~qmak~saa~~~~~~~~~vP 209 (296)
T CHL00174 146 GGSMGSVVGEKITRLIEYATNESLP--LIIVCASGGA-----RMQEGS---------LSLMQMAKISSALYDYQSNKKLF 209 (296)
T ss_pred ccCcCHHHHHHHHHHHHHHHHcCCC--EEEEECCCCc-----cccccc---------hhhhhhHHHHHHHHHHHHcCCCC
Confidence 4688999999999999999877654 4555543332 222110 01111111111122112356799
Q ss_pred EEEEEccccchHHHHH-HHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHc
Q 026127 103 TVAAVNGHAAAAGLTL-ALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRM 181 (243)
Q Consensus 103 ~Iaav~G~~~G~G~~l-a~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~ 181 (243)
.|+++.|+|.||+... ++.||++|+.++ +.+ |+.-|.. +...+| .. +.-.-=+|+-.++.
T Consensus 210 ~Isvl~gPt~GG~aas~a~l~Diiiae~~-A~I-------gfAGPrV----Ie~t~g-e~------lpe~fq~ae~l~~~ 270 (296)
T CHL00174 210 YISILTSPTTGGVTASFGMLGDIIIAEPN-AYI-------AFAGKRV----IEQTLN-KT------VPEGSQAAEYLFDK 270 (296)
T ss_pred EEEEEcCCCchHHHHHHHHcccEEEEeCC-eEE-------EeeCHHH----HHHhcC-Cc------CCcccccHHHHHhC
Confidence 9999999999988755 777999998554 544 3322322 222222 10 11111246667899
Q ss_pred CcchhccCCHhHHHHHHHHHHHH
Q 026127 182 GLVEAAYDSEEQVAEASMRLAKQ 204 (243)
Q Consensus 182 Glv~~v~~~~~~l~~~a~~~a~~ 204 (243)
|+||.||+. .++.+...++.+-
T Consensus 271 G~vD~iV~r-~~lr~~l~~ll~~ 292 (296)
T CHL00174 271 GLFDLIVPR-NLLKGVLSELFQL 292 (296)
T ss_pred cCceEEEcH-HHHHHHHHHHHHh
Confidence 999999998 6787776666543
No 136
>PRK10949 protease 4; Provisional
Probab=97.85 E-value=0.00027 Score=66.63 Aligned_cols=83 Identities=16% Similarity=0.162 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 026127 30 AIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNG 109 (243)
Q Consensus 30 ~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G 109 (243)
.+.++.++++++.+|+.|+ .||+.-.+. .|..+..+ +.+.+.+..+....|||||..+.
T Consensus 96 ~l~div~~i~~Aa~D~rIk-givL~i~s~---gG~~~a~~-----------------~eI~~ai~~fk~sGKpVvA~~~~ 154 (618)
T PRK10949 96 SLFDIVNTIRQAKDDRNIT-GIVLDLKNF---AGADQPSM-----------------QYIGKALREFRDSGKPVYAVGDS 154 (618)
T ss_pred cHHHHHHHHHHHhcCCCce-EEEEEeCCC---CCccHHHH-----------------HHHHHHHHHHHHhCCeEEEEecC
Confidence 4568999999999999999 888876421 12222111 22344455556678999985444
Q ss_pred ccchHHHHHHHhcceeEEecCCceee
Q 026127 110 HAAAAGLTLALSHDYVIMRRDKGVLY 135 (243)
Q Consensus 110 ~~~G~G~~la~~~D~~ia~~~~~~f~ 135 (243)
+.-+++-||.+||-+++.+. +.++
T Consensus 155 -~~s~~YyLASaAD~I~l~P~-G~v~ 178 (618)
T PRK10949 155 -YSQGQYYLASFANKIYLSPQ-GVVD 178 (618)
T ss_pred -ccchhhhhhhhCCEEEECCC-ceEE
Confidence 45678999999999999886 4443
No 137
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.80 E-value=0.0016 Score=60.17 Aligned_cols=142 Identities=26% Similarity=0.318 Sum_probs=92.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCC--ChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCC
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGF--DLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLP 100 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~--Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (243)
.-++.....+.+..+++.+.++.-+- +.++. |.|. ++.+.. ..+..+...+.. ...+.. .
T Consensus 70 gGs~g~~~~~Ki~ra~~~A~~~~~P~-v~l~d------sgGa~~r~~eg~---------~~l~~~g~i~~~-~~~~~~-~ 131 (493)
T PF01039_consen 70 GGSVGEVHGEKIARAIELALENGLPL-VYLVD------SGGAFLRMQEGV---------ESLMGMGRIFRA-IARLSG-G 131 (493)
T ss_dssp GGTBSHHHHHHHHHHHHHHHHHTEEE-EEEEE------ESSBCGGGGGHH---------HHHHHHHHHHHH-HHHHHT-T
T ss_pred cCCCCcccceeeehHHHHHHHcCCCc-EEecc------ccccccccchhh---------hhhhhhHHHHHH-HHHHhc-C
Confidence 46899999999999999999876653 44443 3344 333322 222233333333 444555 9
Q ss_pred CcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHH---
Q 026127 101 MPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEE--- 177 (243)
Q Consensus 101 kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~e--- 177 (243)
.|+|+++.|+|.|+|..++..||++|+.++.+.+ +++-|. ..+ ..+|+.++.++
T Consensus 132 iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i-------~l~GP~--------------vv~--~~~Ge~~~~~~lgG 188 (493)
T PF01039_consen 132 IPQISVVTGPCTGGGAYLAALSDFVIMVKGTARI-------FLAGPR--------------VVE--SATGEEVDSEELGG 188 (493)
T ss_dssp S-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEE-------ESSTHH--------------HHH--HHHSSCTSHHHHHB
T ss_pred CCeEEEEccccccchhhcccccCccccCccceEE-------Eecccc--------------ccc--cccCccccchhhhh
Confidence 9999999999999999999999999999874443 342222 111 22467777654
Q ss_pred ----HHHcCcchhccCCHhHHHHHHHHHHHHH
Q 026127 178 ----ALRMGLVEAAYDSEEQVAEASMRLAKQL 205 (243)
Q Consensus 178 ----A~~~Glv~~v~~~~~~l~~~a~~~a~~l 205 (243)
+...|.+|.+++++++..+.++++..-+
T Consensus 189 ~~~h~~~sG~~d~v~~de~~a~~~ir~~ls~l 220 (493)
T PF01039_consen 189 ADVHAAKSGVVDYVVDDEEDALAQIRRLLSYL 220 (493)
T ss_dssp HHHHHHTSSSSSEEESSHHHHHHHHHHHHHTS
T ss_pred hhhhcccCCCceEEEechHHHHHHHHHhhccc
Confidence 3478999999998555555555554444
No 138
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.79 E-value=0.0011 Score=53.38 Aligned_cols=96 Identities=19% Similarity=0.224 Sum_probs=62.9
Q ss_pred HHHHHHhcCCCcEEEEEccccchHHHHHHHhccee--EEecCCceeeccccccCcCCChhhHH--HHH------------
Q 026127 91 PVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYV--IMRRDKGVLYMSEVDIGLTLPDYFAA--LFR------------ 154 (243)
Q Consensus 91 ~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~--ia~~~~~~f~~pe~~~Gl~~p~~g~~--~l~------------ 154 (243)
.++..|...+.||...+-|.+...|..|++++|.. ++.++ +++-+.... |. +-+.... .-.
T Consensus 76 AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPn-srimIHqP~-gg-~~G~a~Di~i~A~ei~~~~~~l~~ 152 (200)
T COG0740 76 AIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPN-ARIMIHQPS-GG-AQGQASDIEIHAREILKIKERLNR 152 (200)
T ss_pred HHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCC-ceEEEecCC-cc-CccCHHHHHHHHHHHHHHHHHHHH
Confidence 36677788999999999999999999999999985 88887 666544333 32 1111111 111
Q ss_pred ---HHhCCHHHH--HHHHhcCcCCCHHHHHHcCcchhccCC
Q 026127 155 ---AKVGSATAR--RDVLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 155 ---~~~g~~~~a--~~l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
+.-| .... .+..-...-++|+||+++||||+|...
T Consensus 153 i~a~~TG-q~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~ 192 (200)
T COG0740 153 IYAEHTG-QTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIES 192 (200)
T ss_pred HHHHHcC-CCHHHHHHhhcccccCCHHHHHHcCCcceeccc
Confidence 1111 1111 111222233899999999999999986
No 139
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=97.79 E-value=0.0013 Score=54.11 Aligned_cols=147 Identities=12% Similarity=0.121 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCC-eEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~-~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
.+.++.+.+...+-.++.+...+ .-+.|-+.|+...+|-=+... .....++..|...+-||.
T Consensus 49 ~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v-----------------~~glaIyD~m~~ik~~V~ 111 (222)
T PRK12552 49 VGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFE-----------------TEAFAICDTMRYIKPPVH 111 (222)
T ss_pred hhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCcccccccccc-----------------ccHHHHHHHHHhcCCCeE
Confidence 44458888888777776533211 146666666655555211111 112346677777888999
Q ss_pred EEEccccchHHHHHHHhcce--eEEecCCceeeccccccCcC--CChhhH--HH-----------HHHHhCC-HHHHHHH
Q 026127 105 AAVNGHAAAAGLTLALSHDY--VIMRRDKGVLYMSEVDIGLT--LPDYFA--AL-----------FRAKVGS-ATARRDV 166 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~--~p~~g~--~~-----------l~~~~g~-~~~a~~l 166 (243)
..+-|.|.+.+..|++++|- |++.++ +++-+.....|.. ..+.-. .. +.++-|. ...-.++
T Consensus 112 Tv~~G~AaS~AslIl~aG~kg~R~alpn-s~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d 190 (222)
T PRK12552 112 TICIGQAMGTAAMILSAGTKGQRASLPH-ATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKD 190 (222)
T ss_pred EEEEeehhhHHHHHHhCCCCCceecCCC-cEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999995 889888 7776655443331 111100 00 1111120 1111222
Q ss_pred HhcCcCCCHHHHHHcCcchhccCC
Q 026127 167 LLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 167 ~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
+-...-++|+||+++||||+|+.+
T Consensus 191 ~~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 191 TDRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred hcCCCcCCHHHHHHcCCCcEEecc
Confidence 222334999999999999999965
No 140
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.69 E-value=0.0024 Score=59.15 Aligned_cols=144 Identities=15% Similarity=0.222 Sum_probs=88.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 102 (243)
.-+++....+.+..+++.+.++.-+- +.++.+.|...--|.+. ...+.+.+.... ...-..|
T Consensus 95 gGS~g~~~~~K~~r~~e~A~~~~lPl-V~l~dSgGarm~eg~~~---------------l~~~~~~~~~~~--~~s~~iP 156 (512)
T TIGR01117 95 GGSLGEMHAAKIVKIMDLAMKMGAPV-VGLNDSGGARIQEAVDA---------------LKGYGDIFYRNT--IASGVVP 156 (512)
T ss_pred ccCCCHHHHHHHHHHHHHHHHcCCCE-EEEecCCCCCccccchh---------------hhhHHHHHHHHH--HHcCCCc
Confidence 46889999999999999998876653 44444433211112110 011122222221 1234589
Q ss_pred EEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHH----
Q 026127 103 TVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEA---- 178 (243)
Q Consensus 103 ~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA---- 178 (243)
.|+++.|+|.||+......||++|+.++.+++. +.-|.. +.. .+|+.+++++.
T Consensus 157 ~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~-------~aGP~v----v~~------------~~Ge~v~~e~lGGa~ 213 (512)
T TIGR01117 157 QISAIMGPCAGGAVYSPALTDFIYMVDNTSQMF-------ITGPQV----IKT------------VTGEEVTAEQLGGAM 213 (512)
T ss_pred EEEEEecCCCcHHHHHHHhcCceEEeccceEEE-------ecChHH----HHh------------hcCcccchhhcchHH
Confidence 999999999999988888999999998744333 312221 111 13444444433
Q ss_pred -H--HcCcchhccCCHhHHHHHHHHHHHHHhc
Q 026127 179 -L--RMGLVEAAYDSEEQVAEASMRLAKQLAG 207 (243)
Q Consensus 179 -~--~~Glv~~v~~~~~~l~~~a~~~a~~l~~ 207 (243)
. .-|.+|.+++++++..+.++++..-+-.
T Consensus 214 ~h~~~sGv~d~~~~de~ea~~~~r~~ls~lp~ 245 (512)
T TIGR01117 214 AHNSVSGVAHFIAEDDDDCIMLIRRLLSFLPS 245 (512)
T ss_pred HhccccceeEEecCChHHHHHHHHHHHHhCCc
Confidence 3 5899999999877777777777665543
No 141
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=97.69 E-value=0.0036 Score=58.56 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=88.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCC
Q 026127 22 DEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPM 101 (243)
Q Consensus 22 ~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 101 (243)
..-+++....+.+.++++.+.+..-+ +|.+...|+.+-.+ ..+.+. ....+.+.+. ....+.....
T Consensus 141 ~GGs~g~~~~~Ki~r~~elA~~~~lP--lV~l~DSgGarl~~-q~e~~~----------~~~~~g~if~-~~~~ls~~~V 206 (569)
T PLN02820 141 KGGTYYPITVKKHLRAQEIAAQCRLP--CIYLVDSGGANLPR-QAEVFP----------DRDHFGRIFY-NQARMSSAGI 206 (569)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCCCcCCcc-cccccc----------hHhHHHHHHH-HHHHHhCCCC
Confidence 35689999999999999999877655 44444333333221 111110 0011111122 2233556779
Q ss_pred cEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHH---
Q 026127 102 PTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEA--- 178 (243)
Q Consensus 102 p~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA--- 178 (243)
|.|+++-|+|.|||......||++|++++.+.+. +.-|. ..+ ..+|+.+++++.
T Consensus 207 P~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~-------~aGP~--------------vV~--~~~Ge~v~~eeLGGa 263 (569)
T PLN02820 207 PQIALVLGSCTAGGAYVPAMADESVIVKGNGTIF-------LAGPP--------------LVK--AATGEEVSAEDLGGA 263 (569)
T ss_pred CEEEEEeCCCChHHHHHHHhCCceEEecCCcEEE-------ecCHH--------------HHH--hhcCcccCHHHhCCH
Confidence 9999999999999999999999999998754333 32222 111 123444554443
Q ss_pred --H--HcCcchhccCCHhHHHHHHHHHHHHH
Q 026127 179 --L--RMGLVEAAYDSEEQVAEASMRLAKQL 205 (243)
Q Consensus 179 --~--~~Glv~~v~~~~~~l~~~a~~~a~~l 205 (243)
. ..|.+|-+++++.+..+.++++..-+
T Consensus 264 ~~h~~~sGv~d~~~~de~~a~~~~R~lls~L 294 (569)
T PLN02820 264 DVHCKVSGVSDHFAQDELHALAIGRNIVKNL 294 (569)
T ss_pred HHhcccccccccccCchHHHHHHHHHHHHhc
Confidence 2 47999999988545555555554444
No 142
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.27 E-value=0.0029 Score=53.43 Aligned_cols=94 Identities=18% Similarity=0.308 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHH
Q 026127 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165 (243)
Q Consensus 86 ~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~ 165 (243)
.+.+.+-+..+..+++|+||.|=|---+||..-...+|.+++-++ ++++. + .|.+.++.|=+= ..++.+
T Consensus 174 ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~-s~ySV------i-sPEG~AsILWkD---~~ka~e 242 (317)
T COG0825 174 SEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLEN-STYSV------I-SPEGCASILWKD---ASKAKE 242 (317)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHh-ceeee------c-ChhhhhhhhhcC---hhhhHH
Confidence 455667778889999999999999987777766677899999998 77873 2 466655543221 233333
Q ss_pred HHhcCcCCCHHHHHHcCcchhccCCH
Q 026127 166 VLLRAKKIKGEEALRMGLVEAAYDSE 191 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~~ 191 (243)
. .....++|.+.+++|+||.|++.+
T Consensus 243 A-Ae~mkita~dLk~lgiID~II~Ep 267 (317)
T COG0825 243 A-AEAMKITAHDLKELGIIDGIIPEP 267 (317)
T ss_pred H-HHHcCCCHHHHHhCCCcceeccCC
Confidence 3 356789999999999999999863
No 143
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=97.01 E-value=0.031 Score=46.91 Aligned_cols=161 Identities=13% Similarity=0.165 Sum_probs=106.2
Q ss_pred EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHH
Q 026127 10 VFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESF 89 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (243)
++...++..- -.-++....=+.|..+++++-++.- - +|+++.+|++=-.-.-++- -+ ....
T Consensus 124 vv~av~df~F--mgGSmGsVvGeki~ra~E~A~e~k~-P-~v~f~aSGGARMQEg~lSL--------------MQ-Makt 184 (294)
T COG0777 124 VVLAVMDFAF--MGGSMGSVVGEKITRAIERAIEDKL-P-LVLFSASGGARMQEGILSL--------------MQ-MAKT 184 (294)
T ss_pred EEEEEEeccc--cccchhHHHHHHHHHHHHHHHHhCC-C-EEEEecCcchhHhHHHHHH--------------HH-HHHH
Confidence 4444444332 3457788888899999999887754 4 7888776543222111111 11 1234
Q ss_pred HHHHHHHhcCCCcEEEEEccccchHH-HHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHh
Q 026127 90 RPVVAAMMDLPMPTVAAVNGHAAAAG-LTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLL 168 (243)
Q Consensus 90 ~~~~~~l~~~~kp~Iaav~G~~~G~G-~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l 168 (243)
...+.++.+...|.|+.+..+..||= ..+++..|+.||-+. +.+ |+.-|-..-+++.+.++ ..
T Consensus 185 saAl~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~-AlI-------GFAGpRVIEQTire~LP-eg------- 248 (294)
T COG0777 185 SAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPG-ALI-------GFAGPRVIEQTIREKLP-EG------- 248 (294)
T ss_pred HHHHHHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcc-ccc-------ccCcchhhhhhhcccCC-cc-------
Confidence 55677788899999999999998775 589999999999766 554 44334333333333343 11
Q ss_pred cCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCC
Q 026127 169 RAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRK 209 (243)
Q Consensus 169 ~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~ 209 (243)
-=+++-.++.|+||.||+. .++......+...+...+
T Consensus 249 ---fQ~aEfLlehG~iD~iv~R-~elr~tla~ll~~~~~~~ 285 (294)
T COG0777 249 ---FQTAEFLLEHGMIDMIVHR-DELRTTLASLLAKLTPQP 285 (294)
T ss_pred ---hhhHHHHHHcCCceeeecH-HHHHHHHHHHHHHhCCCC
Confidence 1246677899999999998 788888888877776654
No 144
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=96.85 E-value=0.028 Score=52.05 Aligned_cols=173 Identities=12% Similarity=0.136 Sum_probs=101.7
Q ss_pred eCcEEEEEEcCCCCCCCC--CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHH
Q 026127 7 HGDVFVLTLTGSSDVDEH--RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHY 84 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N--~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 84 (243)
+|.-.-|.=|+| +.+ .++.+-.+...+.++.+++..-+ +|.+... ..|..|.. .+...
T Consensus 292 ~G~pVGiian~~---~~~~G~~~~~~a~K~arfi~lcd~~~iP--lv~l~dt-pGf~~g~~--------------~E~~g 351 (493)
T PF01039_consen 292 GGRPVGIIANNP---RQRAGALDPDGARKAARFIRLCDAFNIP--LVTLVDT-PGFMPGPE--------------AERAG 351 (493)
T ss_dssp TTEEEEEEEE-T---TCGGGEB-HHHHHHHHHHHHHHHHTT----EEEEEEE-CEB--SHH--------------HHHTT
T ss_pred CCcceEEEEecc---ccccccCChHHHHHHHHHHHHHHhhCCc--eEEEeec-ccccccch--------------hhhcc
Confidence 333334555666 333 69999999999999999875333 4544433 45555542 22334
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhc----ceeEEecCCceeeccccccCcCCChhhHHHHHHH-hC-
Q 026127 85 MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSH----DYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAK-VG- 158 (243)
Q Consensus 85 ~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~----D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~-~g- 158 (243)
......+++.++.++++|+|..|-|.+.|+|...+... |+++|.++ ++++ ...|...+..+.+. .-
T Consensus 352 ~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~-a~~~-------vm~~e~a~~i~~~~~~~~ 423 (493)
T PF01039_consen 352 IIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPT-AEIG-------VMGPEGAASILYRDELEA 423 (493)
T ss_dssp HHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT--EEE-------SS-HHHHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhc-ceee-------ecChhhhheeeehhhhhh
Confidence 56677889999999999999999999999888555555 77777776 5554 42344433322211 10
Q ss_pred ------CHHH-HHHHH--hcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC
Q 026127 159 ------SATA-RRDVL--LRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208 (243)
Q Consensus 159 ------~~~~-a~~l~--l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~ 208 (243)
.... ..+.+ ..-+.-++..+...|++|.|+++ .+.............++
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p-~~tR~~l~~~l~~~~~~ 481 (493)
T PF01039_consen 424 AEAEGADPEAQRAEKIAEYEDELSSPYRAASRGYVDDIIDP-AETRKVLIAALEMLWQK 481 (493)
T ss_dssp SCHCCHSHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSG-GGHHHHHHHHHHHHTTS
T ss_pred hhcccchhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCH-HHHHHHHHHHHHHHHhC
Confidence 0000 11111 11223688999999999999988 56666655555554444
No 145
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.78 E-value=0.11 Score=48.74 Aligned_cols=158 Identities=11% Similarity=0.010 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 25 RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
+++.+..+...+.++.+++-.-+ +|.+.-. ..|..|.+-+. ....+...+++.++....+|.|
T Consensus 381 ~l~~~~a~Kaarfi~lc~~~~iP--lv~l~D~-pGf~~G~~~E~--------------~G~~~~~a~l~~A~a~~~VP~i 443 (569)
T PLN02820 381 ILFTESALKGAHFIELCAQRGIP--LLFLQNI-TGFMVGSRSEA--------------SGIAKAGAKMVMAVACAKVPKI 443 (569)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCC--EEEEEEC-CCCCCCHHHHH--------------hhHHHHHHHHHHHHHhCCCCEE
Confidence 57788888888888888864333 3444332 33666653332 3356678889999999999999
Q ss_pred EEEccccchHHHHHHH----hcceeEEecCCceeeccccccCcCCChhhHHHHHH-Hh-----------CCHHHH-HHH-
Q 026127 105 AAVNGHAAAAGLTLAL----SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRA-KV-----------GSATAR-RDV- 166 (243)
Q Consensus 105 aav~G~~~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~-~~-----------g~~~~a-~~l- 166 (243)
+.|-|.+.|+|..-+. ..|++++.++ + .+|...|......+.+ .+ .....+ ++.
T Consensus 444 svi~g~a~G~g~~aM~g~~~~~d~~~awp~-A-------~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~ 515 (569)
T PLN02820 444 TIIVGGSFGAGNYGMCGRAYSPNFLFMWPN-A-------RIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKT 515 (569)
T ss_pred EEEECCcchHHHHHhcCcCCCCCEEEECCC-C-------eEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHH
Confidence 9999999998875554 4566666655 4 4455234443333332 11 101111 111
Q ss_pred -HhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC
Q 026127 167 -LLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208 (243)
Q Consensus 167 -~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~ 208 (243)
-..-+..++-.|-+.|+||.|+++ .+.........+.....
T Consensus 516 ~~~~~~~~~p~~aa~~~~vD~VIdP-~dTR~~l~~~l~~~~~~ 557 (569)
T PLN02820 516 VEAYEREANPYYSTARLWDDGVIDP-ADTRRVLGLCLSAALNR 557 (569)
T ss_pred HHHHHHhCCHHHHHHcCCcCcccCH-HHHHHHHHHHHHHhhcC
Confidence 111234577788899999999987 54544444444444333
No 146
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=96.58 E-value=0.032 Score=51.33 Aligned_cols=143 Identities=24% Similarity=0.280 Sum_probs=87.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCC
Q 026127 22 DEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPM 101 (243)
Q Consensus 22 ~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 101 (243)
+.-++.....+.+..+.+.+.++..+. +.+..+.|..---| +..+ ..+...|. -...++.. +
T Consensus 103 ~gGt~~~~~~~Ki~r~~~~A~~~g~P~-i~l~dsgGari~~~--v~~l-------------~g~g~iF~-~~a~~Sg~-I 164 (526)
T COG4799 103 KGGTLGEMTAKKILRAQELAIENGLPV-IGLNDSGGARIQEG--VPSL-------------AGYGRIFY-RNARASGV-I 164 (526)
T ss_pred ecccccccccchHHHHHHHHHHcCCCE-EEEEcccccccccC--cccc-------------ccchHHHH-HHHHhccC-C
Confidence 467888888888888888888877775 66665544333333 1111 11111222 22334445 9
Q ss_pred cEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHH----
Q 026127 102 PTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEE---- 177 (243)
Q Consensus 102 p~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~e---- 177 (243)
|.|++|-|+|.|||.-+-..||++|+.++.++ +.++-|+.- - ..||+.++++|
T Consensus 165 PqIsvv~G~c~gGgaY~pal~D~~imv~~~~~-------mfltGP~~i----k------------~vtGe~V~~e~LGGa 221 (526)
T COG4799 165 PQISVVMGPCAGGGAYSPALTDFVIMVRDQSY-------MFLTGPPVI----K------------AVTGEEVSAEELGGA 221 (526)
T ss_pred CEEEEEEecCcccccccccccceEEEEcCCcc-------EEeeCHHHH----H------------hhcCcEeehhhccch
Confidence 99999999999999999999999999998432 233223321 1 12344444433
Q ss_pred ---HHHcCcchhccCCHhHHHHHHHHHHHHH
Q 026127 178 ---ALRMGLVEAAYDSEEQVAEASMRLAKQL 205 (243)
Q Consensus 178 ---A~~~Glv~~v~~~~~~l~~~a~~~a~~l 205 (243)
+...|.+|.+.++.++..+.++++..-+
T Consensus 222 ~vh~~~sGva~~~a~dd~~Ai~~vr~~lsyl 252 (526)
T COG4799 222 QVHARKSGVADLLAEDDEDAIELVRRLLSYL 252 (526)
T ss_pred hhhcccccceeeeecCHHHHHHHHHHHHHhc
Confidence 2345999999988544444444444443
No 147
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.21 Score=41.67 Aligned_cols=134 Identities=13% Similarity=0.095 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
++.++.+.+...+-.++.++.-| -|.+- .-|.|+.+.. ...++..+..+.-||-.
T Consensus 101 Idd~va~~viaqlL~Ld~ed~~K-~I~ly----INSPGG~vta--------------------glAIYDtMq~ik~~V~T 155 (275)
T KOG0840|consen 101 IDDDVANLVIAQLLYLDSEDPKK-PIYLY----INSPGGSVTA--------------------GLAIYDTMQYIKPDVST 155 (275)
T ss_pred CcHHHHHHHHHHHHHhhccCCCC-CeEEE----EeCCCCccch--------------------hhhHHHHHHhhCCCcee
Confidence 77888888888777777554434 33331 1244444421 12345556666666666
Q ss_pred EEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhH--H---HH---HHHhCCHHHHHHH--HhcC-----
Q 026127 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA--A---LF---RAKVGSATARRDV--LLRA----- 170 (243)
Q Consensus 106 av~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~--~---~l---~~~~g~~~~a~~l--~l~g----- 170 (243)
.+-|.|.+-|..|..+ .+.. .++.+|..++=+.-|.+|. + .. -+.+-......++ --||
T Consensus 156 ic~G~Aas~aalLLaa-----G~KG-~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~ 229 (275)
T KOG0840|consen 156 ICVGLAASMAALLLAA-----GAKG-KRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEV 229 (275)
T ss_pred eehhhHHhHHHHHHhc-----CCCc-ceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 6667777766555433 1222 5677777776665555441 1 11 1111101111111 1344
Q ss_pred --------cCCCHHHHHHcCcchhccCC
Q 026127 171 --------KKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 171 --------~~~~a~eA~~~Glv~~v~~~ 190 (243)
+-++|+||+++||||+|.++
T Consensus 230 i~~d~dRd~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 230 IEKDMDRDRFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred HHhhhcccccCCHHHHHHhcchhhhhcC
Confidence 34899999999999999974
No 148
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=92.82 E-value=3.2 Score=38.56 Aligned_cols=168 Identities=12% Similarity=0.113 Sum_probs=99.7
Q ss_pred EEEcCCCCCCCC-CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHH
Q 026127 13 LTLTGSSDVDEH-RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRP 91 (243)
Q Consensus 13 i~ln~p~~~~~N-~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (243)
|.=|.|. ..| .++.+....-.+.++-.+.. .+= .|.+. .-+.|..|-+-+. ....+...+
T Consensus 328 iIANqp~--~~~G~l~~~sa~KaArFI~~cd~~-~iP-lv~L~-d~pGFm~G~~~E~--------------~giik~Gak 388 (526)
T COG4799 328 IIANQPR--HLGGVLDIDSADKAARFIRLCDAF-NIP-LVFLV-DTPGFMPGTDQEY--------------GGIIKHGAK 388 (526)
T ss_pred EEecCcc--ccccccchHHHHHHHHHHHhhhcc-CCC-eEEEe-CCCCCCCChhHHh--------------ChHHHhhhH
Confidence 4556674 444 89999999999999655554 433 44443 3477999885543 334666788
Q ss_pred HHHHHhcCCCcEEEEEccccchHHHHHHH----hcceeEEecCCceeeccccccCcCCChhhHHHHH-HHhC---CHHHH
Q 026127 92 VVAAMMDLPMPTVAAVNGHAAAAGLTLAL----SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFR-AKVG---SATAR 163 (243)
Q Consensus 92 ~~~~l~~~~kp~Iaav~G~~~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~-~~~g---~~~~a 163 (243)
++.++.+..+|.|..|-|-+.|+|...+. ..|+.+|. |..++|..-|.+....+. +++. .+...
T Consensus 389 l~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~Aw--------P~a~iaVMG~egAv~i~~~k~l~~~~~~~~~ 460 (526)
T COG4799 389 LLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAW--------PTAEIAVMGPEGAVSILYRKELAAAERPEER 460 (526)
T ss_pred HHhhHhhccCCeEEEEecccccceeeeecCccCCCceeEec--------CcceeeecCHHHHHHHHHHHHhhcccCchhH
Confidence 99999999999999999999999975443 34454444 445555523433333333 2221 00000
Q ss_pred H----H-H--HhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC
Q 026127 164 R----D-V--LLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208 (243)
Q Consensus 164 ~----~-l--~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~ 208 (243)
+ + + -+.-+-..+--|.+.|++|.|+++. +...........+..+
T Consensus 461 ~~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI~p~-~tR~~L~~~l~~~~~k 511 (526)
T COG4799 461 EALLRKQLIAEYEEQFSNPYYAAERGYIDAVIDPA-DTRAVLGRALSALANK 511 (526)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHhCCCCcccCHH-HHHHHHHHHHHHHhcC
Confidence 0 0 0 1111224566677899999999873 3433333333333333
No 149
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=91.93 E-value=3.8 Score=37.16 Aligned_cols=168 Identities=8% Similarity=-0.010 Sum_probs=99.7
Q ss_pred EEEcCCCCCC-CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHH
Q 026127 13 LTLTGSSDVD-EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRP 91 (243)
Q Consensus 13 i~ln~p~~~~-~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (243)
|.-|+|+ - .-.|..+....-.+.++-..+.. +- .|.+...++ |-.|.+.+... ..+....
T Consensus 353 Ivgnn~k--f~~G~L~s~sa~KgarfIe~c~q~~-IP-Li~l~ni~G-fm~g~~~e~~g--------------IaK~gAk 413 (536)
T KOG0540|consen 353 IVGNNPK--FAGGVLFSESAVKGARFIELCDQRN-IP-LIFLQNITG-FMVGRAAEAGG--------------IAKHGAK 413 (536)
T ss_pred EeccCch--hcccccchhhhhhhHHHHHHHHhcC-Cc-EEEEEccCC-ccccchhhhhc--------------hhhhhhh
Confidence 4556662 1 24777788888888877777654 33 555555544 99998776432 3444567
Q ss_pred HHHHHhcCCCcEEEEEccccchHHHH---HHHhcceeEEecCCceeeccccccCcCCChhhHHH-HHHHhCCHHHHHHHH
Q 026127 92 VVAAMMDLPMPTVAAVNGHAAAAGLT---LALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAAL-FRAKVGSATARRDVL 167 (243)
Q Consensus 92 ~~~~l~~~~kp~Iaav~G~~~G~G~~---la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~-l~~~~g~~~~a~~l~ 167 (243)
++.+.....+|-|..+-|.+.||-.. -+++-|+.|+.++ +++++-..+-. ...-.+. +.+.....+...+.+
T Consensus 414 lv~a~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~-A~IavmG~~~a---~~Vi~q~~~e~a~~~~~~~~E~f 489 (536)
T KOG0540|consen 414 LVYAVACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPN-ARIAVMGGKQA---ANVIFQITLEKAVALKAPYIEKF 489 (536)
T ss_pred hhhhhhhccCceEEEEecCccCCcccccccccCCceeEEccc-ceeeeccccch---hhhhhhhhhhhhhhhcchHHHHh
Confidence 88889999999999999999997655 4466788888877 66653211100 0000111 222222122233333
Q ss_pred hcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCC
Q 026127 168 LRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRK 209 (243)
Q Consensus 168 l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~ 209 (243)
|.++.+. ..||+|.|+++ .+.....-...+..+.+|
T Consensus 490 --~npy~a~---~Rg~~D~II~p-~~tR~vl~~~l~~~~~~p 525 (536)
T KOG0540|consen 490 --GNPYYAA---ARGWDDGIIDP-SDTRKVLGLDLQAAANKP 525 (536)
T ss_pred --cCccHHH---HhhccccccCh-hHhhHHHHHHHHHHhcCC
Confidence 7776654 78999999987 334333333333334443
No 150
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=91.24 E-value=0.65 Score=40.38 Aligned_cols=80 Identities=24% Similarity=0.271 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHHHhcC---CCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026127 27 GPPAIDSILSAIAKAKAEA---TPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPT 103 (243)
Q Consensus 27 ~~~~~~~l~~~l~~~~~d~---~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ 103 (243)
......++.++++.+.... .+-++||.+|+| ..+.+....+ ..+.++|+.+|.||
T Consensus 53 G~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGG-------s~eDL~~FN~---------------e~varai~~~~~Pv 110 (319)
T PF02601_consen 53 GEGAAASIVSALRKANEMGQADDFDVIIIIRGGG-------SIEDLWAFND---------------EEVARAIAASPIPV 110 (319)
T ss_pred ccchHHHHHHHHHHHHhccccccccEEEEecCCC-------ChHHhcccCh---------------HHHHHHHHhCCCCE
Confidence 3456788999999998654 455466666643 3333332111 45888999999999
Q ss_pred EEEEccccchHHHHHHHhcceeEEecC
Q 026127 104 VAAVNGHAAAAGLTLALSHDYVIMRRD 130 (243)
Q Consensus 104 Iaav~G~~~G~G~~la~~~D~~ia~~~ 130 (243)
|++| ||-.-- .-.=+.+|.|..++.
T Consensus 111 isaI-GHe~D~-ti~D~vAd~ra~TPt 135 (319)
T PF02601_consen 111 ISAI-GHETDF-TIADFVADLRAPTPT 135 (319)
T ss_pred EEec-CCCCCc-hHHHHHHHhhCCCHH
Confidence 9976 333222 223366788888876
No 151
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=89.83 E-value=1.1 Score=40.75 Aligned_cols=81 Identities=20% Similarity=0.214 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
-..+...++..+++.++..+++-++||.+|.| -.+.+....+ ..+.++++++|.|||+
T Consensus 167 QG~~a~~~i~~al~~~~~~~~~dviii~RGGG-------s~eDL~~Fn~---------------e~~~rai~~~~~Pvis 224 (432)
T TIGR00237 167 QGEGAVQSIVESIELANTKNECDVLIVGRGGG-------SLEDLWSFND---------------EKVARAIFLSKIPIIS 224 (432)
T ss_pred cCccHHHHHHHHHHHhhcCCCCCEEEEecCCC-------CHHHhhhcCc---------------HHHHHHHHcCCCCEEE
Confidence 34566788889998888766566355555533 2333332211 4588899999999999
Q ss_pred EEccccchHHHHHHHhcceeEEecC
Q 026127 106 AVNGHAAAAGLTLALSHDYVIMRRD 130 (243)
Q Consensus 106 av~G~~~G~G~~la~~~D~~ia~~~ 130 (243)
+| ||-.-- .-.=+.+|.|..++.
T Consensus 225 ~i-GHe~D~-ti~D~vAd~ra~TPt 247 (432)
T TIGR00237 225 AV-GHETDF-TISDFVADLRAPTPS 247 (432)
T ss_pred ec-CcCCCc-cHHHHhhhccCCCcH
Confidence 76 222111 113366788888776
No 152
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=89.78 E-value=10 Score=31.55 Aligned_cols=96 Identities=15% Similarity=0.171 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccccchHHH-HHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHH
Q 026127 83 HYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGL-TLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSAT 161 (243)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~-~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
+++.....+.+...+...-|||+.|-|.+++||| .-.+.+|.+||-++ +... -+++ | .+.+.+++ . ..
T Consensus 88 ~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~g-a~i~----vM~~--~--s~ARVTk~-~-ve 156 (234)
T PF06833_consen 88 NQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALPG-AMIH----VMGK--P--SAARVTKR-P-VE 156 (234)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCCC-Ceee----cCCh--H--HhHHHhhc-C-HH
Confidence 3444455666667778899999999999999997 67788888888775 4332 1222 2 34454433 2 34
Q ss_pred HHHHHHhcCcC--CCHHHHHHcCcchhccC
Q 026127 162 ARRDVLLRAKK--IKGEEALRMGLVEAAYD 189 (243)
Q Consensus 162 ~a~~l~l~g~~--~~a~eA~~~Glv~~v~~ 189 (243)
.-.++.-+--+ .+.+--.++|.++++.+
T Consensus 157 ~Le~la~s~PvfA~gi~ny~~lG~l~~l~~ 186 (234)
T PF06833_consen 157 ELEELAKSVPVFAPGIENYAKLGALDELWD 186 (234)
T ss_pred HHHHHhhcCCCcCCCHHHHHHhccHHHHhc
Confidence 44455544433 45677789999999998
No 153
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=87.71 E-value=1.6 Score=39.47 Aligned_cols=77 Identities=26% Similarity=0.299 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEE-ecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 026127 28 PPAIDSILSAIAKAKAEATPGSALIT-TSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAA 106 (243)
Q Consensus 28 ~~~~~~l~~~l~~~~~d~~v~~~vvl-~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa 106 (243)
.....++.++++.+++..++. ++|+ .| |+-++++...++ ..+.+++++++.|+|++
T Consensus 175 ~~A~~eIv~aI~~an~~~~~D-vlIVaRG-------GGSiEDLW~FNd---------------E~vaRAi~~s~iPvISA 231 (440)
T COG1570 175 EGAAEEIVEAIERANQRGDVD-VLIVARG-------GGSIEDLWAFND---------------EIVARAIAASRIPVISA 231 (440)
T ss_pred CCcHHHHHHHHHHhhccCCCC-EEEEecC-------cchHHHHhccCh---------------HHHHHHHHhCCCCeEee
Confidence 455788999999999888887 4444 34 344555544322 35889999999999998
Q ss_pred EccccchHHHHHH-HhcceeEEecC
Q 026127 107 VNGHAAAAGLTLA-LSHDYVIMRRD 130 (243)
Q Consensus 107 v~G~~~G~G~~la-~~~D~~ia~~~ 130 (243)
| ||-.- +.|+ ..+|+|-.++.
T Consensus 232 V-GHEtD--~tL~DfVAD~RApTPT 253 (440)
T COG1570 232 V-GHETD--FTLADFVADLRAPTPT 253 (440)
T ss_pred c-ccCCC--ccHHHhhhhccCCCch
Confidence 7 23211 2222 45677777776
No 154
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=86.42 E-value=2.2 Score=38.90 Aligned_cols=79 Identities=24% Similarity=0.283 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 026127 27 GPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAA 106 (243)
Q Consensus 27 ~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa 106 (243)
......++.++++.++... +-++||.+|.| -.+.+....+ ..+.++++++|.|||++
T Consensus 174 G~~A~~~i~~al~~~~~~~-~Dviii~RGGG-------S~eDL~~Fn~---------------e~v~~ai~~~~~Pvis~ 230 (438)
T PRK00286 174 GEGAAASIVAAIERANARG-EDVLIVARGGG-------SLEDLWAFND---------------EAVARAIAASRIPVISA 230 (438)
T ss_pred CccHHHHHHHHHHHhcCCC-CCEEEEecCCC-------CHHHhhccCc---------------HHHHHHHHcCCCCEEEe
Confidence 3456788888888887643 44366666643 2333332211 45888999999999997
Q ss_pred EccccchHHHHHHHhcceeEEecC
Q 026127 107 VNGHAAAAGLTLALSHDYVIMRRD 130 (243)
Q Consensus 107 v~G~~~G~G~~la~~~D~~ia~~~ 130 (243)
| ||-.-- .-.=+.+|.|..++.
T Consensus 231 I-GHE~D~-tl~D~vAd~ra~TPt 252 (438)
T PRK00286 231 V-GHETDF-TIADFVADLRAPTPT 252 (438)
T ss_pred c-cCCCCc-cHHHHhhhccCCChH
Confidence 6 222111 123366788888776
No 155
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=73.43 E-value=14 Score=31.65 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 026127 34 ILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAA 112 (243)
Q Consensus 34 l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~ 112 (243)
+.++|+.+++||+.+ +||+-|.- |.+-+ +...+ .+.+ ...+||||+.+-|.+.
T Consensus 188 fid~L~~fe~Dp~T~-~ivmiGEi-----GG~aE------------e~AA~-------~i~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 188 FIDALEMFEADPETE-AIVMIGEI-----GGPAE------------EEAAE-------YIKA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred HHHHHHHHhcCcccc-EEEEEecC-----CCcHH------------HHHHH-------HHHH-hccCCCEEEEEeccCC
Confidence 557888899999998 78877751 22222 22222 2333 2345999999999876
No 156
>smart00250 PLEC Plectin repeat.
Probab=71.03 E-value=3.3 Score=23.81 Aligned_cols=18 Identities=44% Similarity=0.702 Sum_probs=16.8
Q ss_pred cCcCCCHHHHHHcCcchh
Q 026127 169 RAKKIKGEEALRMGLVEA 186 (243)
Q Consensus 169 ~g~~~~a~eA~~~Glv~~ 186 (243)
+|+++|-.||.+.||+|.
T Consensus 18 t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 18 TGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCcCHHHHHHcCCCCc
Confidence 899999999999999985
No 157
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=65.85 E-value=2.5 Score=25.37 Aligned_cols=21 Identities=24% Similarity=0.454 Sum_probs=17.1
Q ss_pred hcCcCCCHHHHHHcCcchhcc
Q 026127 168 LRAKKIKGEEALRMGLVEAAY 188 (243)
Q Consensus 168 l~g~~~~a~eA~~~Glv~~v~ 188 (243)
-+|++++-++|.+.||||.-.
T Consensus 17 ~tg~~lsv~~A~~~glId~~~ 37 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDSDT 37 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-HHH
T ss_pred CCCeEEcHHHHHHCCCcCHHH
Confidence 478999999999999998643
No 158
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=65.13 E-value=29 Score=24.80 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=39.5
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCC--------CCeEEEEecC
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEAT--------PGSALITTSH 56 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~--------v~~~vvl~g~ 56 (243)
++..++.+++..+.++.| ++-.....+.+.+.+...... ++ .||+--.
T Consensus 1 y~~~~~~~~v~ii~~~g~-------l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~vIlD~s 56 (117)
T PF01740_consen 1 YIEIETHDGVLIIRLDGP-------LFFANAEEFRDRIRKLIDEDPERIKKRQTIK-NVILDMS 56 (117)
T ss_dssp SCEEEEETTEEEEEEESE-------ESHHHHHHHHHHHHHHHCCSSS--HTSSSSS-EEEEEET
T ss_pred CCeeEEECCEEEEEEeeE-------EEHHHHHHHHHHHHHhhhcccccccccccce-EEEEEEE
Confidence 357788999999999977 899999999999988887665 67 7887543
No 159
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=64.24 E-value=15 Score=28.45 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 026127 32 DSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHA 111 (243)
Q Consensus 32 ~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~ 111 (243)
....+++..+.+||+++ +|++-+.+.+ ....+. ...+...+...-. ...++|+|+.|-|..
T Consensus 59 ~~~~~~l~~~~~Dp~v~-vIlvd~~~G~----g~~~~~------------A~~l~~a~~~~~~--~~~~~pvVa~v~GT~ 119 (153)
T PF00549_consen 59 STRNEALEIEAADPEVK-VILVDIVGGI----GSCEDP------------AAGLIPAIKEAKA--EGRKKPVVARVCGTN 119 (153)
T ss_dssp SHHHHHHHHHHTSTTES-EEEEEEESSS----SSHHHH------------HHHHHHHHSHCTH--TTT-SEEEEEEESTT
T ss_pred HHHHHHHHHHhcCCCcc-EEEEEecccc----CchHHH------------HHHHHHHHHhccc--cCCCCcEEEEeeeec
Confidence 45677888889999999 8888553321 211111 1111111111111 347899999999987
Q ss_pred ch
Q 026127 112 AA 113 (243)
Q Consensus 112 ~G 113 (243)
.-
T Consensus 120 ~d 121 (153)
T PF00549_consen 120 AD 121 (153)
T ss_dssp CH
T ss_pred CC
Confidence 66
No 160
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=61.35 E-value=39 Score=23.62 Aligned_cols=48 Identities=13% Similarity=0.238 Sum_probs=33.0
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG 57 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g 57 (243)
+.++..+++.+|++..+ ++.+....+.+.+..+..++..+ .|++--.+
T Consensus 5 i~~~~~~~~~vi~~~G~-------l~~~~~~~~~~~l~~~~~~~~~~-~vvidls~ 52 (108)
T TIGR00377 5 IETEVQEGVVIVRLSGE-------LDAHTAPLLREKVTPAAERTGPR-PIVLDLED 52 (108)
T ss_pred EEEEEECCEEEEEEecc-------cccccHHHHHHHHHHHHHhcCCC-eEEEECCC
Confidence 45667889999999754 66666777777777666545666 67775443
No 161
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=61.04 E-value=54 Score=22.92 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=34.8
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG 57 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g 57 (243)
+.+++.+++..+.++.| ++-....++.+.+..+-..+.++ .+++--.+
T Consensus 1 ~~~~~~~~~~vi~l~G~-------L~f~~~~~~~~~l~~~~~~~~~~-~vilDls~ 48 (106)
T TIGR02886 1 IEFEVKGDVLIVRLSGE-------LDHHTAERVRRKIDDAIERRPIK-HLILNLKN 48 (106)
T ss_pred CeEEEECCEEEEEEecc-------cchhhHHHHHHHHHHHHHhCCCC-EEEEECCC
Confidence 35678889999999876 77777778888876664444567 77775544
No 162
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=59.12 E-value=23 Score=26.85 Aligned_cols=51 Identities=10% Similarity=0.121 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 026127 33 SILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGH 110 (243)
Q Consensus 33 ~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~ 110 (243)
.+.+.++.+.+||+.+ +|++--++ + .. .+.+.+..++.... ||||+..-|.
T Consensus 41 ~~~d~l~~~~~D~~t~-~I~ly~E~------~-----~d--------------~~~f~~~~~~a~~~-KPVv~lk~Gr 91 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTR-VIVLYLEG------I-----GD--------------GRRFLEAARRAARR-KPVVVLKAGR 91 (138)
T ss_dssp -HHHHHHHHCT-SS---EEEEEES-------------S---------------HHHHHHHHHHHCCC-S-EEEEE---
T ss_pred CHHHHHHHHhcCCCCC-EEEEEccC------C-----CC--------------HHHHHHHHHHHhcC-CCEEEEeCCC
Confidence 4667777788888888 77774331 1 00 12344556666666 9999999887
No 163
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=52.88 E-value=1.6e+02 Score=25.66 Aligned_cols=108 Identities=14% Similarity=0.164 Sum_probs=55.8
Q ss_pred CCCCCCHHHHHHHHHHH-HHHHhcCCCCeEEEEecCCCcccCCCChh-hHHhc----CCCcc-h--HHHHHHHHHHHHHH
Q 026127 22 DEHRFGPPAIDSILSAI-AKAKAEATPGSALITTSHGKFFSNGFDLA-WAQAA----GSRTG-A--RERLHYMVESFRPV 92 (243)
Q Consensus 22 ~~N~l~~~~~~~l~~~l-~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~-~~~~~----~~~~~-~--~~~~~~~~~~~~~~ 92 (243)
..|.++.+-+.+-...+ .++...+..+.+|+|.|..+.|--+-+.. .+... ....+ . -...++.-....+.
T Consensus 121 a~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~ 200 (311)
T PF06258_consen 121 APNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAEAA 200 (311)
T ss_pred CCCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHH
Confidence 56888888777766555 55666667775666766667766554411 11110 00000 0 00000111111222
Q ss_pred HHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecC
Q 026127 93 VAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRD 130 (243)
Q Consensus 93 ~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~ 130 (243)
+..... +.|-+...+|.--+--+++...||.+++++|
T Consensus 201 L~~~~~-~~~~~~~~~~~~~nPy~~~La~ad~i~VT~D 237 (311)
T PF06258_consen 201 LRELLK-DNPGVYIWDGTGENPYLGFLAAADAIVVTED 237 (311)
T ss_pred HHHhhc-CCCceEEecCCCCCcHHHHHHhCCEEEEcCc
Confidence 222221 2233323366656667789999999999999
No 164
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=44.33 E-value=86 Score=27.43 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=12.4
Q ss_pred cCCCcEEEEEccccc
Q 026127 98 DLPMPTVAAVNGHAA 112 (243)
Q Consensus 98 ~~~kp~Iaav~G~~~ 112 (243)
...||||+.+-|...
T Consensus 250 ~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 250 PIKKPVVSFIAGITA 264 (317)
T ss_pred cCCCcEEEEEecCCC
Confidence 468999999998864
No 165
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=43.69 E-value=97 Score=20.85 Aligned_cols=46 Identities=28% Similarity=0.491 Sum_probs=29.0
Q ss_pred eeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q 026127 3 TLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG 57 (243)
Q Consensus 3 ~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g 57 (243)
.....+++..+.+..+ ++......+.+.+.....++ ++ .+++--.+
T Consensus 2 ~~~~~~~~~ii~l~G~-------l~~~~~~~~~~~~~~~~~~~-~~-~viid~~~ 47 (99)
T cd07043 2 TVEERGGVLVVRLSGE-------LDAATAPELREALEELLAEG-PR-RLVLDLSG 47 (99)
T ss_pred ceEEECCEEEEEEece-------ecccchHHHHHHHHHHHHcC-CC-EEEEECCC
Confidence 3456778888888654 55555666777666655443 56 67675543
No 166
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=38.75 E-value=1.2e+02 Score=25.18 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=26.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCc
Q 026127 22 DEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKF 59 (243)
Q Consensus 22 ~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~ 59 (243)
..+.++.+.++++.+.+.++. ..+ +|+++|.|..
T Consensus 16 ~~~~~~~~~l~~l~~~l~~l~---g~~-vvlVhGgg~~ 49 (252)
T cd04241 16 RPETIREENLERIARELAEAI---DEK-LVLVHGGGSF 49 (252)
T ss_pred CCCccCHHHHHHHHHHHHhcc---CCC-EEEEECCCcc
Confidence 456799999999999998876 456 7778886644
No 167
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=36.80 E-value=2.8e+02 Score=24.62 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 24 HRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.-++.+.+.+|.+.+.+.-++.++. .||+|+
T Consensus 78 ~~m~~~~w~~la~~I~~~~~~~~~d-GvVItH 108 (351)
T COG0252 78 SDMTPEDWLRLAEAINEALDDGDVD-GVVITH 108 (351)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCC-eEEEeC
Confidence 4689999999999999988787766 455544
No 168
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=36.35 E-value=1.3e+02 Score=26.13 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 25 RFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
-++.+.+.+|.+.+++.-+++++.++||+.|.
T Consensus 56 ~~t~~~w~~la~~i~~~~~~~~~dG~VVtHGT 87 (323)
T smart00870 56 NMTPADWLKLAKRINEALADDGYDGVVVTHGT 87 (323)
T ss_pred cCCHHHHHHHHHHHHHHhccCCCCEEEEecCC
Confidence 48889999999999886566677745555554
No 169
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=34.97 E-value=2.8e+02 Score=24.52 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 24 HRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.-++.+.+..|.+.+++.-.++++.++||+.|.
T Consensus 83 ~~mt~~dw~~la~~I~~~~~~~~~~GiVVtHGT 115 (349)
T TIGR00520 83 QDMNEEVLLKLAKGINELLASDDYDGIVITHGT 115 (349)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 458889999999999887766677745555443
No 170
>PLN02522 ATP citrate (pro-S)-lyase
Probab=33.40 E-value=1.2e+02 Score=29.02 Aligned_cols=14 Identities=43% Similarity=0.574 Sum_probs=12.7
Q ss_pred CCCcEEEEEccccc
Q 026127 99 LPMPTVAAVNGHAA 112 (243)
Q Consensus 99 ~~kp~Iaav~G~~~ 112 (243)
..||||+.+-|.+.
T Consensus 249 ~~KPVVa~kaGrsa 262 (608)
T PLN02522 249 VSKPVVAWVSGTCA 262 (608)
T ss_pred CCCCEEEEeccCCC
Confidence 78999999999976
No 171
>PF11524 SeleniumBinding: Selenium binding protein; InterPro: IPR021603 Selenium is an important nutrient which needs to be regulated since lack of the nutrient leads to cell abnormalities and high concentrations are toxic.SeBP regulates the level of free selenium in the cell by sequestering the nutrient during transport. SeBP acts as a pentamer and delivers the selenium to the selenophosphate synthetase enzyme []. Each subunit is composed of an alpha helix on top of a four stranded twisted ss sheet, stabilised by hydrogen bonds []. members of this entry are restricted to the archaeal Methanococcales.; PDB: 2JZ7_D.
Probab=31.97 E-value=28 Score=23.47 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=26.5
Q ss_pred cCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHH
Q 026127 169 RAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205 (243)
Q Consensus 169 ~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l 205 (243)
|...+++-|.+-+|+|++++++-|++.+...+.++..
T Consensus 11 T~~eIPGiely~~gIvS~~~envd~li~~lee~vk~k 47 (81)
T PF11524_consen 11 TTNEIPGIELYYLGIVSEASENVDELIKKLEEKVKAK 47 (81)
T ss_dssp SSS--TTS--EEEEEEEEBSSSHHHHHHHHHHHHHHT
T ss_pred EcCcCCCeEEEeehhHHHHHhhHHHHHHHHHHHHHhC
Confidence 5567889999999999999998777777777766553
No 172
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=30.76 E-value=1.8e+02 Score=20.00 Aligned_cols=46 Identities=15% Similarity=0.303 Sum_probs=33.1
Q ss_pred eeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q 026127 4 LEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG 57 (243)
Q Consensus 4 ~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g 57 (243)
.+..+++..+.++.| ++-.....+.+.+...-.++.++ .+|+.-++
T Consensus 3 ~~~~~~v~ii~~~G~-------l~f~~~~~~~~~l~~~~~~~~~~-~vilDls~ 48 (100)
T cd06844 3 LEKVDDYWVVRLEGE-------LDHHSVEQFKEELLHNITNVAGK-TIVIDISA 48 (100)
T ss_pred eEEECCEEEEEEEEE-------ecHhhHHHHHHHHHHHHHhCCCC-EEEEECCC
Confidence 456778999999866 77788888888776544445667 78885543
No 173
>PRK06091 membrane protein FdrA; Validated
Probab=29.27 E-value=1.8e+02 Score=27.49 Aligned_cols=22 Identities=27% Similarity=0.313 Sum_probs=16.2
Q ss_pred HHHHHHhcCCCcEEEEEccccc
Q 026127 91 PVVAAMMDLPMPTVAAVNGHAA 112 (243)
Q Consensus 91 ~~~~~l~~~~kp~Iaav~G~~~ 112 (243)
+++.+...+.||||+..-|..-
T Consensus 270 ~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 270 KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred HHHHHHhhCCCCEEEEEecCCc
Confidence 4555555569999999998754
No 174
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=28.75 E-value=1.3e+02 Score=24.73 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=27.7
Q ss_pred EEEEecCC-CcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 026127 50 ALITTSHG-KFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGH 110 (243)
Q Consensus 50 ~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~ 110 (243)
.+||||+. .+|+ |-.|+. .+..++..+....|+++..+-||
T Consensus 62 gfvIsGS~~dAf~---d~dWI~-----------------KLcs~~kkld~mkkkvlGICFGH 103 (245)
T KOG3179|consen 62 GFVISGSKHDAFS---DADWIK-----------------KLCSFVKKLDFMKKKVLGICFGH 103 (245)
T ss_pred eEEEeCCcccccc---cchHHH-----------------HHHHHHHHHHhhccceEEEeccH
Confidence 66777765 5555 444443 34557777778889988888776
No 175
>KOG3985 consensus Methylthioadenosine phosphorylase MTAP [Nucleotide transport and metabolism]
Probab=28.74 E-value=1.2e+02 Score=25.26 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=40.0
Q ss_pred EeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChh
Q 026127 6 KHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLA 67 (243)
Q Consensus 6 ~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~ 67 (243)
..++|++|.+-.| ++..+.+-|.+.-+++..--.-+ ..+++-.|+.||+-..-.
T Consensus 131 ~a~gVcHv~~~~p-------f~~k~reil~~~a~~l~~~~hd~-~tvVciEGPrFStRAES~ 184 (283)
T KOG3985|consen 131 QAGGVCHVPFGPP-------FSQKLREILISTAKELTNPHHDD-GTVVCIEGPRFSTRAESK 184 (283)
T ss_pred CCCceEeccCCCC-------cCHHHHHHHHHHHHHhcCCcCCc-eeEEEeeCCccchHHHHH
Confidence 3478999998755 88888888888888877533334 788888889999865433
No 176
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.63 E-value=1.6e+02 Score=23.61 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=25.9
Q ss_pred CCCC-HHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCC
Q 026127 24 HRFG-PPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGF 64 (243)
Q Consensus 24 N~l~-~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~ 64 (243)
+.++ .+.-.+|.+.|.++.+ ..+++|.|++|.|. |.|.
T Consensus 102 HG~tq~eAr~~L~~Fi~~a~~-~~~rcv~VihGkG~--s~g~ 140 (184)
T COG2840 102 HGLTQEEARQELGAFIARARA-EGLRCVLVIHGKGR--SKGS 140 (184)
T ss_pred cCCCHHHHHHHHHHHHHHHHH-hCCcEEEEEeCCCc--CCCC
Confidence 4455 4455666666666664 46777999999998 6664
No 177
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=27.76 E-value=1.7e+02 Score=23.51 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=29.7
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.+.|+.| .+.+|......+.+.+.++.++.... +|++|..
T Consensus 167 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH~ 206 (228)
T PRK10584 167 VLFADEP----TGNLDRQTGDKIADLLFSLNREHGTT-LILVTHD 206 (228)
T ss_pred EEEEeCC----CCCCCHHHHHHHHHHHHHHHHhcCCE-EEEEecC
Confidence 4566655 59999999999999999987654433 6666664
No 178
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=27.75 E-value=1.3e+02 Score=24.11 Aligned_cols=40 Identities=8% Similarity=0.159 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.+-|+.| .+.+|......+.+.+.++.++.... +|++|..
T Consensus 161 lllLDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH~ 200 (218)
T cd03255 161 IILADEP----TGNLDSETGKEVMELLRELNKEAGTT-IVVVTHD 200 (218)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHhcCCe-EEEEECC
Confidence 3566655 59999999999999999987644433 6666654
No 179
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=27.50 E-value=1.3e+02 Score=24.01 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhcCC--CcEEEEEccccchHHHHHHHhcce
Q 026127 84 YMVESFRPVVAAMMDLP--MPTVAAVNGHAAAAGLTLALSHDY 124 (243)
Q Consensus 84 ~~~~~~~~~~~~l~~~~--kp~Iaav~G~~~G~G~~la~~~D~ 124 (243)
.....+...+..+...+ .+--..+-|.|+||.+.+.+++..
T Consensus 77 ~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~ 119 (218)
T PF01738_consen 77 QVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD 119 (218)
T ss_dssp HHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc
Confidence 44555666778888777 334455779999999999888765
No 180
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=27.37 E-value=1.2e+02 Score=24.00 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+.++.| .+.+|......+.+.+.++.++ ... +|++|.
T Consensus 155 llllDEP----t~~LD~~~~~~~~~~l~~~~~~-~~t-vi~~sH 192 (211)
T cd03225 155 ILLLDEP----TAGLDPAGRRELLELLKKLKAE-GKT-IIIVTH 192 (211)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHc-CCE-EEEEeC
Confidence 3566655 5999999999999999998765 433 666665
No 181
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.21 E-value=1.7e+02 Score=23.27 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+.++.| .+.+|....+.+.+.+.++.++.... +|++|+
T Consensus 152 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-iii~sH 190 (214)
T cd03297 152 LLLLDEP----FSALDRALRLQLLPELKQIKKNLNIP-VIFVTH 190 (214)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHHcCcE-EEEEec
Confidence 3556655 59999999999999999987643433 666665
No 182
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=27.15 E-value=2.2e+02 Score=24.43 Aligned_cols=66 Identities=15% Similarity=0.182 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 28 PPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 28 ~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
.+|-..+.+.+++.. |+ +|||||....--...|+..+.+ ....+.+.+..+..=.--.+.+..||-
T Consensus 140 ~eqp~~i~~Ll~~~~--PD---IlViTGHD~~~K~~~d~~dl~~-------YrnSkyFVeaV~~aR~~ep~~D~LVIf 205 (287)
T PF05582_consen 140 KEQPEKIYRLLEEYR--PD---ILVITGHDGYLKNKKDYSDLNN-------YRNSKYFVEAVKEARKYEPNLDDLVIF 205 (287)
T ss_pred HHhhHHHHHHHHHcC--CC---EEEEeCchhhhcCCCChhhhhh-------hhccHHHHHHHHHHHhcCCCcccEEEE
Confidence 456677777776654 54 8999998654444457776654 333344444444433333456666664
No 183
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=26.89 E-value=1.9e+02 Score=23.09 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+.++.| .+.+|......+.+.+.++.+..... +|++|.
T Consensus 149 llllDEP----t~~LD~~~~~~~~~~l~~~~~~~~~t-ii~vsh 187 (213)
T TIGR01277 149 ILLLDEP----FSALDPLLREEMLALVKQLCSERQRT-LLMVTH 187 (213)
T ss_pred EEEEcCC----CccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 3556655 59999999999999999987654433 566655
No 184
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=26.85 E-value=2e+02 Score=21.90 Aligned_cols=38 Identities=13% Similarity=0.357 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+-++.| .+.+|.+..+.+.+.++++.++ ..- +|++|.
T Consensus 103 illlDEP----~~~LD~~~~~~l~~~l~~~~~~-~~t-iii~sh 140 (163)
T cd03216 103 LLILDEP----TAALTPAEVERLFKVIRRLRAQ-GVA-VIFISH 140 (163)
T ss_pred EEEEECC----CcCCCHHHHHHHHHHHHHHHHC-CCE-EEEEeC
Confidence 3556655 5999999999999999998654 432 556555
No 185
>smart00463 SMR Small MutS-related domain.
Probab=26.73 E-value=1.7e+02 Score=19.31 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEecCCCc
Q 026127 28 PPAIDSILSAIAKAKAEATPGSALITTSHGKF 59 (243)
Q Consensus 28 ~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~ 59 (243)
.+....+.+.++++......+.+.|++|.|..
T Consensus 12 ~eA~~~l~~~l~~~~~~~~~~~~~II~G~G~~ 43 (80)
T smart00463 12 EEALTALDKFLNNARLKGLEQKLVIITGKGKH 43 (80)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcccCC
Confidence 57788888888888876552339999999855
No 186
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=26.70 E-value=1.8e+02 Score=23.20 Aligned_cols=40 Identities=10% Similarity=0.128 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.+-|+.| .+.+|......+.+.+.++.++.... +|++|..
T Consensus 162 illlDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~tH~ 201 (221)
T TIGR02211 162 LVLADEP----TGNLDNNNAKIIFDLMLELNRELNTS-FLVVTHD 201 (221)
T ss_pred EEEEeCC----CCcCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCC
Confidence 3566655 59999999999999999987654433 6666654
No 187
>PRK11096 ansB L-asparaginase II; Provisional
Probab=26.67 E-value=4.5e+02 Score=23.25 Aligned_cols=31 Identities=10% Similarity=0.062 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 24 HRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.-++.+.+.+|.+.+++ +++++.++||+.|.
T Consensus 80 ~~~t~~~~~~l~~~i~~--~~~~~dGiVVtHGT 110 (347)
T PRK11096 80 QDMNDEVWLTLAKKINT--DCDKTDGFVITHGT 110 (347)
T ss_pred ccCCHHHHHHHHHHHHH--hcCCCCEEEEeCCC
Confidence 45788888899999887 34566645555554
No 188
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=26.26 E-value=1.2e+02 Score=20.18 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCC
Q 026127 28 PPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGF 64 (243)
Q Consensus 28 ~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~ 64 (243)
.+....+.+.++.+.+...-. +.|++|.|..-..|.
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~-~~II~G~G~hS~~g~ 44 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRE-LRIITGKGNHSKGGV 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSE-EEEE--STCTCCTSH
T ss_pred HHHHHHHHHHHHHHHHcCCCE-EEEEeccCCCCCCCc
Confidence 467778888888887665544 999999985555554
No 189
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=26.25 E-value=2e+02 Score=23.48 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++.++.... +|++|.
T Consensus 174 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-iiivsH 212 (236)
T cd03267 174 ILFLDEP----TIGLDVVAQENIRNFLKEYNRERGTT-VLLTSH 212 (236)
T ss_pred EEEEcCC----CCCCCHHHHHHHHHHHHHHHhcCCCE-EEEEec
Confidence 4567655 59999999999999999987654432 555555
No 190
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=26.23 E-value=3.8e+02 Score=23.29 Aligned_cols=77 Identities=12% Similarity=-0.007 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026127 24 HRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPT 103 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ 103 (243)
.-.+.+.+..+..-++++.. ...- ++||||++-.-..--|..+ +..+.+++.-+.+..+|+
T Consensus 78 ~~~~~~hl~~~y~~~~~i~~-~~~D-G~IITGAp~e~~~fedv~Y-----------------W~El~~i~~w~~~~~~s~ 138 (302)
T PRK05368 78 KNTPAEHLENFYCTFEDIKD-EKFD-GLIITGAPVEQLPFEDVDY-----------------WDELKEILDWAKTHVTST 138 (302)
T ss_pred CCCCHHHHHHhccCHHHhcc-CCCC-EEEEcCCCCCCccCCCCch-----------------HHHHHHHHHHHHHcCCCE
Confidence 34567889999999999874 4555 8999998633222222221 222333444444456776
Q ss_pred EEEEccccchHHHHHHHhcc
Q 026127 104 VAAVNGHAAAAGLTLALSHD 123 (243)
Q Consensus 104 Iaav~G~~~G~G~~la~~~D 123 (243)
+. .|+|.-+.+-....
T Consensus 139 Lg----ICwGaQa~a~algG 154 (302)
T PRK05368 139 LF----ICWAAQAALYHLYG 154 (302)
T ss_pred EE----EcHHHHHHHHHcCC
Confidence 65 56666665544444
No 191
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.22 E-value=1.9e+02 Score=23.48 Aligned_cols=40 Identities=13% Similarity=0.053 Sum_probs=29.4
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.+.|+.| .+.+|......+.+.+.++.++.... +|+++..
T Consensus 151 llllDEP----~~gLD~~~~~~l~~~l~~~~~~~~~t-iii~sh~ 190 (232)
T cd03300 151 VLLLDEP----LGALDLKLRKDMQLELKRLQKELGIT-FVFVTHD 190 (232)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHHcCCE-EEEEeCC
Confidence 3556655 59999999999999999987643433 6666653
No 192
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.03 E-value=1.4e+02 Score=24.01 Aligned_cols=40 Identities=28% Similarity=0.232 Sum_probs=29.6
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.+-++.| .+.+|......+.+.+.++.++.... +|++|+.
T Consensus 152 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-vi~~tH~ 191 (220)
T cd03265 152 VLFLDEP----TIGLDPQTRAHVWEYIEKLKEEFGMT-ILLTTHY 191 (220)
T ss_pred EEEEcCC----ccCCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCC
Confidence 3556654 69999999999999999987653433 6666663
No 193
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.02 E-value=1.9e+02 Score=22.94 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+.++.| .+.+|......+.+.+.++.++.... +|++|.
T Consensus 149 llllDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH 187 (211)
T cd03298 149 VLLLDEP----FAALDPALRAEMLDLVLDLHAETKMT-VLMVTH 187 (211)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEec
Confidence 3566655 59999999999999999987654433 566655
No 194
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=25.52 E-value=1.8e+02 Score=23.13 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=18.2
Q ss_pred CCCeEEEEecCCCcccCCCChh
Q 026127 46 TPGSALITTSHGKFFSNGFDLA 67 (243)
Q Consensus 46 ~v~~~vvl~g~g~~F~~G~Dl~ 67 (243)
++|+|+++-|+|+.-|+|+--.
T Consensus 144 ~P~VV~LiF~SGK~ViTGaK~~ 165 (185)
T COG2101 144 EPRVVLLLFGSGKLVITGAKSE 165 (185)
T ss_pred CCCEEEEEecCCcEEEecCCCH
Confidence 5677888999999999999544
No 195
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=25.06 E-value=2.6e+02 Score=23.94 Aligned_cols=66 Identities=18% Similarity=0.211 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 28 PPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 28 ~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
.++-..+.+.+++.. |+ ++||||....--...|+..+.+ ....+.|.+..+..=.-.-+.+.-||-
T Consensus 139 ~eqp~~i~~Ll~~~~--PD---IlViTGHD~~~K~~~d~~dl~~-------YrnSkyFVeaVk~aR~y~~~~D~LVIF 204 (283)
T TIGR02855 139 KEMPEKVLDLIEEVR--PD---ILVITGHDAYSKNKGNYMDLNA-------YRHSKYFVETVREARKYVPSLDQLVIF 204 (283)
T ss_pred hhchHHHHHHHHHhC--CC---EEEEeCchhhhcCCCChhhhhh-------hhhhHHHHHHHHHHHhcCCCcccEEEE
Confidence 456666777776664 55 8999998655555577776654 233344444444333333355666664
No 196
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=25.03 E-value=2.1e+02 Score=23.19 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+.++.| .+.+|.....++.+.+.++.++.... +|++|.
T Consensus 135 lllLDEP----t~gLD~~~~~~l~~~l~~~~~~~~~t-ii~~sH 173 (230)
T TIGR01184 135 VLLLDEP----FGALDALTRGNLQEELMQIWEEHRVT-VLMVTH 173 (230)
T ss_pred EEEEcCC----CcCCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 3566655 69999999999999999987654433 666665
No 197
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=24.97 E-value=2.8e+02 Score=25.29 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q 026127 24 HRFGPPAIDSILSAIAKAKAEATPGSALITTSHG 57 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g 57 (243)
.-++.+.+.+|.+.+++.-.+ .+.++||+.|..
T Consensus 131 ~~mtp~~W~~La~~I~~~~~~-~~dGvVVtHGTD 163 (419)
T PRK04183 131 ENMTPEYWVEIAEAVYEEIKN-GADGVVVAHGTD 163 (419)
T ss_pred hhCCHHHHHHHHHHHHHHhhc-cCCeEEEecCCc
Confidence 347888999999999876654 455466666653
No 198
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.97 E-value=2e+02 Score=22.79 Aligned_cols=39 Identities=10% Similarity=0.107 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+.++.| .+.+|......+.+.+.++.+..... +|++|.
T Consensus 151 ~lllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH 189 (213)
T cd03259 151 LLLLDEP----LSALDAKLREELREELKELQRELGIT-TIYVTH 189 (213)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHHcCCE-EEEEec
Confidence 4566655 59999999999999999987543432 566655
No 199
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.91 E-value=1.3e+02 Score=24.90 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhcCC--CcEEEEEccccchHHHHHHHhcce-eEE
Q 026127 84 YMVESFRPVVAAMMDLP--MPTVAAVNGHAAAAGLTLALSHDY-VIM 127 (243)
Q Consensus 84 ~~~~~~~~~~~~l~~~~--kp~Iaav~G~~~G~G~~la~~~D~-~ia 127 (243)
+....+...+..+...+ .+.=..+-|.|+||++.+.+++.. .+.
T Consensus 91 ~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~~v~ 137 (236)
T COG0412 91 EVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAPEVK 137 (236)
T ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccCCcc
Confidence 44455566666666555 232244679999999999999987 343
No 200
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=24.77 E-value=3.8e+02 Score=21.84 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=23.3
Q ss_pred CCCCCC---HHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 22 DEHRFG---PPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 22 ~~N~l~---~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
+.|.+. .+.++++.+.++.+-.++ - +||++|.
T Consensus 16 ~~~~~g~~~~~~~~~i~~~~~~~~~~~--D-~viiaGD 50 (232)
T cd07393 16 PMDVFGPEWKNHTEKIKENWDNVVAPE--D-IVLIPGD 50 (232)
T ss_pred CCcccCccHHHHHHHHHHHHHhcCCCC--C-EEEEcCC
Confidence 346666 688888888888886444 4 8999884
No 201
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=24.65 E-value=2.8e+02 Score=21.79 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=32.9
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChh
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLA 67 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~ 67 (243)
.+.++.| .+.+|......+.+.+.++.++ ... +|++|.. ..|-...|..
T Consensus 148 ~lilDEP----~~~LD~~~~~~l~~~l~~~~~~-~~t-iii~sh~-~~~~~~~d~~ 196 (200)
T PRK13540 148 LWLLDEP----LVALDELSLLTIITKIQEHRAK-GGA-VLLTSHQ-DLPLNKADYE 196 (200)
T ss_pred EEEEeCC----CcccCHHHHHHHHHHHHHHHHc-CCE-EEEEeCC-chhccccchh
Confidence 4566655 5899999999999999998654 322 4555444 5555555554
No 202
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=24.63 E-value=2.1e+02 Score=22.90 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+-|+.| .+.+|......+.+.+.++.++.... +|++|.
T Consensus 166 lllLDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH 204 (228)
T cd03257 166 LLIADEP----TSALDVSVQAQILDLLKKLQEELGLT-LLFITH 204 (228)
T ss_pred EEEecCC----CCCCCHHHHHHHHHHHHHHHHHcCCE-EEEEeC
Confidence 3556655 58999999999999999987653432 566665
No 203
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.60 E-value=2.2e+02 Score=22.80 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+.|+.| .+.+|.....++.+.+.++.++.... +|++|.
T Consensus 152 lllLDEP----t~~LD~~~~~~~~~~l~~~~~~~~~t-iii~sH 190 (220)
T cd03293 152 VLLLDEP----FSALDALTREQLQEELLDIWRETGKT-VLLVTH 190 (220)
T ss_pred EEEECCC----CCCCCHHHHHHHHHHHHHHHHHcCCE-EEEEec
Confidence 4566655 59999999999999999986543433 666665
No 204
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=24.44 E-value=1.5e+02 Score=24.63 Aligned_cols=73 Identities=18% Similarity=0.132 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcC-CCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEccc-
Q 026127 33 SILSAIAKAKAEA-TPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGH- 110 (243)
Q Consensus 33 ~l~~~l~~~~~d~-~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~- 110 (243)
...++|+++..++ +|. -||..+.-+.+..|.|..-.. ++---|..-=.-++|.
T Consensus 107 Aa~~AL~~~g~~~~dIt-hlv~vs~TG~~~PglD~~l~~------------------------~LgL~~~v~R~~i~~~G 161 (226)
T PF00195_consen 107 AARKALAEAGLDPSDIT-HLVTVSCTGIAAPGLDARLIN------------------------RLGLRPDVQRTPIFGMG 161 (226)
T ss_dssp HHHHHHHHHTS-GGGEC-EEEEEESSSSECS-HHHHHHH------------------------HHT--TTSEEEEEES-G
T ss_pred HHHHHHHHcCCCCcccc-eEEEEecCCcCCCchhHHHHh------------------------cCCCCCCcEEEEEeccc
Confidence 3444566665443 455 455444334677777665333 2222333333456666
Q ss_pred cchHHHHHHHhcceeEEecC
Q 026127 111 AAAAGLTLALSHDYVIMRRD 130 (243)
Q Consensus 111 ~~G~G~~la~~~D~~ia~~~ 130 (243)
|.||.-.|..+.|+.-+.++
T Consensus 162 C~gg~~~L~~A~~~~~~~p~ 181 (226)
T PF00195_consen 162 CAGGAAGLRRAKDIARANPG 181 (226)
T ss_dssp GGHHHHHHHHHHHHHHHSTT
T ss_pred hhhHHHHHHHHHHHHhCCcc
Confidence 78888899999998777666
No 205
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=24.11 E-value=2.1e+02 Score=23.94 Aligned_cols=40 Identities=5% Similarity=0.134 Sum_probs=29.6
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.+.|+.| .+.+|.....++.+.+.++.++.... +|++|..
T Consensus 164 lllLDEP----t~~LD~~~~~~l~~~l~~~~~~~g~t-iiivsH~ 203 (269)
T PRK11831 164 LIMFDEP----FVGQDPITMGVLVKLISELNSALGVT-CVVVSHD 203 (269)
T ss_pred EEEEcCC----CccCCHHHHHHHHHHHHHHHHhcCcE-EEEEecC
Confidence 4566655 59999999999999999987654433 6666653
No 206
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=23.96 E-value=1.5e+02 Score=24.83 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=28.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcc
Q 026127 22 DEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFF 60 (243)
Q Consensus 22 ~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F 60 (243)
..+.+|.+.+..+.+.++++... .++ +-|+.|.|+.|
T Consensus 21 ~~~gid~~~i~~~a~~i~~~~~~-g~e-V~iVvGGGni~ 57 (238)
T COG0528 21 QGFGIDPEVLDRIANEIKELVDL-GVE-VAVVVGGGNIA 57 (238)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CcE-EEEEECCCHHH
Confidence 34679999999999999999865 567 65666655433
No 207
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=23.78 E-value=2.2e+02 Score=22.55 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++.+. ... +|++|.
T Consensus 153 llllDEP----t~~LD~~~~~~l~~~l~~~~~~-~~t-vi~~sH 190 (213)
T cd03235 153 LLLLDEP----FAGVDPKTQEDIYELLRELRRE-GMT-ILVVTH 190 (213)
T ss_pred EEEEeCC----cccCCHHHHHHHHHHHHHHHhc-CCE-EEEEeC
Confidence 3556655 5999999999999999998753 332 566655
No 208
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=23.76 E-value=2.4e+02 Score=25.87 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCCcEEEEEccccc
Q 026127 89 FRPVVAAMMDLPMPTVAAVNGHAA 112 (243)
Q Consensus 89 ~~~~~~~l~~~~kp~Iaav~G~~~ 112 (243)
|.+..++... .||||+..-|..-
T Consensus 220 f~~aa~~a~~-~KPVv~~k~Grs~ 242 (447)
T TIGR02717 220 FLKTAREISK-KKPIVVLKSGTSE 242 (447)
T ss_pred HHHHHHHHcC-CCCEEEEecCCCh
Confidence 3344445544 8999999998864
No 209
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=23.68 E-value=2.3e+02 Score=22.51 Aligned_cols=39 Identities=5% Similarity=0.071 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++.++.... +|++|.
T Consensus 151 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-vi~~sH 189 (213)
T cd03301 151 VFLMDEP----LSNLDAKLRVQMRAELKRLQQRLGTT-TIYVTH 189 (213)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHHcCCE-EEEEeC
Confidence 4566655 59999999999999999987643433 666655
No 210
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.66 E-value=2.1e+02 Score=23.18 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.++++.++.... +|++|+
T Consensus 157 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-vi~vsH 195 (235)
T cd03261 157 LLLYDEP----TAGLDPIASGVIDDLIRSLKKELGLT-SIMVTH 195 (235)
T ss_pred EEEecCC----cccCCHHHHHHHHHHHHHHHHhcCcE-EEEEec
Confidence 3556655 59999999999999999987643333 666665
No 211
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=23.62 E-value=2.4e+02 Score=21.82 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+-++.| .+.+|.+..+.+.+.+.++.++.... +|++|.
T Consensus 118 llllDEP----~~~LD~~~~~~~~~~l~~~~~~~~~t-iii~sh 156 (180)
T cd03214 118 ILLLDEP----TSHLDIAHQIELLELLRRLARERGKT-VVMVLH 156 (180)
T ss_pred EEEEeCC----ccCCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 3556655 58999999999999999987642332 566655
No 212
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=23.22 E-value=2.3e+02 Score=22.88 Aligned_cols=40 Identities=18% Similarity=0.129 Sum_probs=29.6
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.+.++.| .+.+|......+.+.+.++.++.... +|++|..
T Consensus 158 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-vii~sh~ 197 (225)
T PRK10247 158 VLLLDEI----TSALDESNKHNVNEIIHRYVREQNIA-VLWVTHD 197 (225)
T ss_pred EEEEeCC----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEECC
Confidence 4566655 58999999999999999987654433 6666664
No 213
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=23.14 E-value=2.4e+02 Score=22.81 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+-|+.| .+.+|.....++.+.+.++.++.... +|++|.
T Consensus 166 lllLDEP----t~~LD~~~~~~l~~~l~~~~~~~g~t-vii~sH 204 (233)
T PRK11629 166 LVLADEP----TGNLDARNADSIFQLLGELNRLQGTA-FLVVTH 204 (233)
T ss_pred EEEEeCC----CCCCCHHHHHHHHHHHHHHHHhCCCE-EEEEeC
Confidence 4566655 58999999999999999987543432 566655
No 214
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=23.13 E-value=2.1e+02 Score=23.82 Aligned_cols=40 Identities=8% Similarity=0.110 Sum_probs=29.3
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.+.|+.| .+.+|......+.+.+.++.+..... +|++|..
T Consensus 170 lllLDEP----t~~LD~~~~~~l~~~l~~~~~~~g~t-viivsH~ 209 (267)
T PRK15112 170 VIIADEA----LASLDMSMRSQLINLMLELQEKQGIS-YIYVTQH 209 (267)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHHcCcE-EEEEeCC
Confidence 4566655 59999999999999999987643433 6666653
No 215
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=23.06 E-value=1.7e+02 Score=23.27 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.+-++.| .+.+|......+.+.+.++.+. ... +|++|+.
T Consensus 159 llllDEP----t~~LD~~~~~~l~~~l~~~~~~-~~t-ii~vsH~ 197 (216)
T TIGR00960 159 LLLADEP----TGNLDPELSRDIMRLFEEFNRR-GTT-VLVATHD 197 (216)
T ss_pred EEEEeCC----CCcCCHHHHHHHHHHHHHHHHC-CCE-EEEEeCC
Confidence 3556654 6999999999999999998654 332 6666663
No 216
>PF03802 CitX: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; InterPro: IPR005551 Members of this protein family are annotated as CitX, containing the CitX domain, the domain is also found in the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25 from EC), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.; GO: 0051191 prosthetic group biosynthetic process
Probab=22.79 E-value=2.4e+02 Score=22.10 Aligned_cols=63 Identities=13% Similarity=0.079 Sum_probs=39.5
Q ss_pred eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEE----EecCC--CcccCCCChhhHH
Q 026127 7 HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALI----TTSHG--KFFSNGFDLAWAQ 70 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vv----l~g~g--~~F~~G~Dl~~~~ 70 (243)
+..+..+++|-|...|.|...........+.+...-....+. .+. ....| .+|..-.|...+.
T Consensus 27 ~~~lis~tlNiPG~iK~~~~~~~~f~~~~~~l~~~l~~~~~~-~~~~~~~~~~tGpe~~~~v~~~a~~vK 95 (170)
T PF03802_consen 27 GAPLISFTLNIPGPIKNNPLIRRIFDEGIEALEQQLSANGIF-KLEQEILNDPTGPEAFLVVDGDAEEVK 95 (170)
T ss_pred CCcEEEEEEEccccccCCHHHHHHHHHHHHHHHHHHHHcCCe-EeeeeeeecCCcceeeEEeCCCHHHHH
Confidence 467899999998655667777777777666666555444433 222 23333 6777766655544
No 217
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=22.74 E-value=1.5e+02 Score=27.97 Aligned_cols=36 Identities=8% Similarity=0.243 Sum_probs=27.7
Q ss_pred EEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q 026127 13 LTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG 57 (243)
Q Consensus 13 i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g 57 (243)
+.|+. +-|-+|.+.+.+|..++..++. +||++|..-
T Consensus 504 LVLDE----PTNhLD~dsl~AL~~Al~~F~G-----GVv~VSHd~ 539 (582)
T KOG0062|consen 504 LVLDE----PTNHLDRDSLGALAKALKNFNG-----GVVLVSHDE 539 (582)
T ss_pred EEecC----CCccccHHHHHHHHHHHHhcCC-----cEEEEECcH
Confidence 45554 4699999999999999999862 377777653
No 218
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=22.64 E-value=1.8e+02 Score=21.58 Aligned_cols=45 Identities=11% Similarity=0.060 Sum_probs=27.5
Q ss_pred EEEEEEcCCCCCCCCC--CC----------HHHHHHHHHHHHHH--HhcCCCCeEEEEecCC
Q 026127 10 VFVLTLTGSSDVDEHR--FG----------PPAIDSILSAIAKA--KAEATPGSALITTSHG 57 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~--l~----------~~~~~~l~~~l~~~--~~d~~v~~~vvl~g~g 57 (243)
+.+|+.+-|. |... .+ ..+..++.+.+.+. ...+.++ .||+.|.|
T Consensus 25 ~~~i~~~ip~--K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~-~iIiaGPG 83 (133)
T PF03464_consen 25 LQRIESNIPG--KHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVK-CIIIAGPG 83 (133)
T ss_dssp EEEEE-GHCC--CSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCS-EEEEEEST
T ss_pred EEEEEecCCC--ccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccccc-EEEEECCH
Confidence 3456666675 5442 12 24566666666666 5567888 99998854
No 219
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=22.58 E-value=2.2e+02 Score=24.71 Aligned_cols=40 Identities=10% Similarity=0.239 Sum_probs=30.9
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.|.++.| .+++|.....++.+.+.++.++.... +|++|..
T Consensus 179 llilDEP----ts~LD~~~~~~i~~lL~~l~~~~g~t-ii~itHd 218 (330)
T PRK15093 179 LLIADEP----TNAMEPTTQAQIFRLLTRLNQNNNTT-ILLISHD 218 (330)
T ss_pred EEEEeCC----CCcCCHHHHHHHHHHHHHHHHhcCCE-EEEEECC
Confidence 3566655 59999999999999999998754544 7777764
No 220
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=22.46 E-value=2.2e+02 Score=23.53 Aligned_cols=40 Identities=8% Similarity=0.165 Sum_probs=29.8
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.|.++.| .+.+|....+.+.+.+.++.++.... +|++|..
T Consensus 173 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~g~t-vii~tH~ 212 (262)
T PRK09984 173 VILADEP----IASLDPESARIVMDTLRDINQNDGIT-VVVTLHQ 212 (262)
T ss_pred EEEecCc----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCC
Confidence 4566655 59999999999999999997644433 6666654
No 221
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.06 E-value=2.7e+02 Score=21.45 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+.++.| .+.+|......+.+.+.++.++.... +|++|.
T Consensus 121 llilDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-iii~sH 159 (178)
T cd03229 121 VLLLDEP----TSALDPITRREVRALLKSLQAQLGIT-VVLVTH 159 (178)
T ss_pred EEEEeCC----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 4566655 59999999999999999987653332 555555
No 222
>TIGR03124 ctirate_citX holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.
Probab=21.95 E-value=2.4e+02 Score=22.11 Aligned_cols=63 Identities=16% Similarity=0.060 Sum_probs=39.5
Q ss_pred CcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEE------ecCCCcccCCCChhhHHh
Q 026127 8 GDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALIT------TSHGKFFSNGFDLAWAQA 71 (243)
Q Consensus 8 ~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl------~g~g~~F~~G~Dl~~~~~ 71 (243)
..+..+|+|-|.+.|.|...........++++..-.+..+. ++.. ||...+|..-.|..++..
T Consensus 26 ~~Lvs~tlniPGpvK~~~~~~~~f~~~~~~l~~~~~~~~~~-~~~~~~~~~~tG~E~~~~v~~~a~~vK~ 94 (165)
T TIGR03124 26 LTLLSLTLNIPGPIKNNELLRRVFDIGIKAIEALLAKNGWT-ILVQQALNEATGPEAFLVVDAPALELKR 94 (165)
T ss_pred CeEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhcCCe-eeeeeeccCCCCcEEEEEeCCCHHHHHH
Confidence 35777999988655678877777777777776655444433 2211 333367777776666543
No 223
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=21.86 E-value=2.6e+02 Score=22.46 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.+-++.| .+.+|.....++.+.+.++.++.... +|++|..
T Consensus 152 illlDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH~ 191 (230)
T TIGR03410 152 LLLLDEP----TEGIQPSIIKDIGRVIRRLRAEGGMA-ILLVEQY 191 (230)
T ss_pred EEEecCC----cccCCHHHHHHHHHHHHHHHHcCCcE-EEEEeCC
Confidence 3556655 69999999999999999987643432 5666553
No 224
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.81 E-value=2.4e+02 Score=22.83 Aligned_cols=40 Identities=5% Similarity=0.199 Sum_probs=29.3
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.+.++.| .+.+|......+.+.+.++.++.... +|++|..
T Consensus 165 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~tH~ 204 (241)
T cd03256 165 LILADEP----VASLDPASSRQVMDLLKRINREEGIT-VIVSLHQ 204 (241)
T ss_pred EEEEeCc----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCC
Confidence 3566655 59999999999999999987544433 6666653
No 225
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.78 E-value=2.5e+02 Score=22.65 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+.|+.| .+.+|......+.+.+.++.++...- +|++|.
T Consensus 161 lllLDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-vii~sH 199 (233)
T cd03258 161 VLLCDEA----TSALDPETTQSILALLRDINRELGLT-IVLITH 199 (233)
T ss_pred EEEecCC----CCcCCHHHHHHHHHHHHHHHHHcCCE-EEEEeC
Confidence 4566655 59999999999999999987653432 566655
No 226
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.74 E-value=2.4e+02 Score=23.01 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.+.++.| .+.+|......+.+.+.++.++...- +|++|..
T Consensus 156 llllDEP----t~~LD~~~~~~l~~~L~~~~~~~g~t-vii~sH~ 195 (242)
T cd03295 156 LLLMDEP----FGALDPITRDQLQEEFKRLQQELGKT-IVFVTHD 195 (242)
T ss_pred EEEecCC----cccCCHHHHHHHHHHHHHHHHHcCCE-EEEEecC
Confidence 3566655 59999999999999999987643332 6666653
No 227
>PRK14558 pyrH uridylate kinase; Provisional
Probab=21.73 E-value=3.8e+02 Score=21.86 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCc
Q 026127 24 HRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKF 59 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~ 59 (243)
-.++.+.++.+.+.+.++.+. ..+ ++|++|.|..
T Consensus 18 ~~~~~~~i~~la~~i~~~~~~-g~~-viiV~GgGs~ 51 (231)
T PRK14558 18 KGFDPERVNYLVNEIKSVVEY-GFK-IGIVIGAGNL 51 (231)
T ss_pred CCcCHHHHHHHHHHHHHHHHC-CCe-EEEEECccHH
Confidence 368999999999999988654 346 7888776543
No 228
>PRK10908 cell division protein FtsE; Provisional
Probab=21.66 E-value=2.7e+02 Score=22.30 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+.++.| .+.+|....+++.+.+.++.++ ... +|++|.
T Consensus 158 llllDEP----t~~LD~~~~~~l~~~l~~~~~~-~~t-iii~sH 195 (222)
T PRK10908 158 VLLADEP----TGNLDDALSEGILRLFEEFNRV-GVT-VLMATH 195 (222)
T ss_pred EEEEeCC----CCcCCHHHHHHHHHHHHHHHHC-CCE-EEEEeC
Confidence 4566655 5999999999999999998654 433 666665
No 229
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=21.66 E-value=2.6e+02 Score=23.33 Aligned_cols=39 Identities=13% Similarity=0.015 Sum_probs=28.4
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+.|+.| .|.+|......+.+.+.++.++.... +|++|+
T Consensus 154 lllLDEP----t~~LD~~~~~~l~~~L~~~~~~~~~t-viivsH 192 (257)
T PRK11247 154 LLLLDEP----LGALDALTRIEMQDLIESLWQQHGFT-VLLVTH 192 (257)
T ss_pred EEEEeCC----CCCCCHHHHHHHHHHHHHHHHHcCCE-EEEEeC
Confidence 3556655 59999999999999999886543433 566655
No 230
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.60 E-value=2.5e+02 Score=22.80 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=29.4
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.+-|+.| .+.+|......+.+.+.++.++.... +|++|+.
T Consensus 157 llllDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-vii~sH~ 196 (239)
T cd03296 157 VLLLDEP----FGALDAKVRKELRRWLRRLHDELHVT-TVFVTHD 196 (239)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHHcCCE-EEEEeCC
Confidence 4566655 59999999999999999987643433 6666653
No 231
>PF12268 DUF3612: Protein of unknown function (DUF3612); InterPro: IPR022055 This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with PF01381 from PFAM.
Probab=21.52 E-value=88 Score=24.09 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=18.9
Q ss_pred CCCeEEEEecCCCcccCCCChhhHHhc
Q 026127 46 TPGSALITTSHGKFFSNGFDLAWAQAA 72 (243)
Q Consensus 46 ~v~~~vvl~g~g~~F~~G~Dl~~~~~~ 72 (243)
+++ +.=+.|.....|+|+||+...+.
T Consensus 79 Si~-v~D~Agn~hVLCaGIDLNPAi~a 104 (178)
T PF12268_consen 79 SIK-VKDLAGNNHVLCAGIDLNPAIDA 104 (178)
T ss_pred ccc-cccCCCCceeEEecccCCHhHhh
Confidence 344 55566777899999999976553
No 232
>PRK14556 pyrH uridylate kinase; Provisional
Probab=21.52 E-value=1.8e+02 Score=24.52 Aligned_cols=38 Identities=8% Similarity=0.103 Sum_probs=30.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCccc
Q 026127 22 DEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFS 61 (243)
Q Consensus 22 ~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~ 61 (243)
+.+.++.+.+.++.+.+.++.+. .++ +.|+.|.|+.|.
T Consensus 31 ~~~~~d~~~~~~~a~~i~~~~~~-g~~-i~iVvGGGni~R 68 (249)
T PRK14556 31 QGFGINVESAQPIINQIKTLTNF-GVE-LALVVGGGNILR 68 (249)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhC-CcE-EEEEECCCHHHh
Confidence 45679999999999999998864 467 777777777665
No 233
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=21.40 E-value=2.8e+02 Score=21.21 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+-++.| .+.+|.....++.+.+.++.+. ... +|++|.
T Consensus 117 ~lllDEP----t~~LD~~~~~~l~~~l~~~~~~-~~t-ii~~sh 154 (173)
T cd03246 117 ILVLDEP----NSHLDVEGERALNQAIAALKAA-GAT-RIVIAH 154 (173)
T ss_pred EEEEECC----ccccCHHHHHHHHHHHHHHHhC-CCE-EEEEeC
Confidence 3566655 6999999999999999998653 332 566655
No 234
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=21.36 E-value=1.8e+02 Score=23.89 Aligned_cols=40 Identities=8% Similarity=0.099 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.+-++.| .+.+|......+.+.+.++.++.... +|++|..
T Consensus 169 vlllDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-ii~vsH~ 208 (253)
T TIGR02323 169 LVFMDEP----TGGLDVSVQARLLDLLRGLVRDLGLA-VIIVTHD 208 (253)
T ss_pred EEEEcCC----CccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCC
Confidence 3556654 69999999999999999886543433 6666653
No 235
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=21.33 E-value=2.6e+02 Score=23.19 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+.++.| .+.+|......+.+.+.++.+....- +|++|.
T Consensus 149 lllLDEP----t~~LD~~~~~~l~~~L~~~~~~~g~t-viivsH 187 (255)
T PRK11248 149 LLLLDEP----FGALDAFTREQMQTLLLKLWQETGKQ-VLLITH 187 (255)
T ss_pred EEEEeCC----CccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 4566655 59999999999999999985433332 566655
No 236
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=21.25 E-value=2.5e+02 Score=22.77 Aligned_cols=40 Identities=8% Similarity=0.178 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.+-++.| .+.+|......+.+.+.++.++.... +|++|..
T Consensus 166 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-iii~tH~ 205 (243)
T TIGR02315 166 LILADEP----IASLDPKTSKQVMDYLKRINKEDGIT-VIINLHQ 205 (243)
T ss_pred EEEEeCC----cccCCHHHHHHHHHHHHHHHHHcCCE-EEEEeCC
Confidence 3556655 58999999999999999986543433 6666664
No 237
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.23 E-value=2.4e+02 Score=23.81 Aligned_cols=39 Identities=5% Similarity=0.271 Sum_probs=29.4
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+.++.| .+.+|.....++.+.+.++.+..... +|++|.
T Consensus 166 illlDEP----t~~LD~~~~~~l~~~l~~l~~~~g~t-vl~vtH 204 (286)
T PRK13646 166 IIVLDEP----TAGLDPQSKRQVMRLLKSLQTDENKT-IILVSH 204 (286)
T ss_pred EEEEECC----cccCCHHHHHHHHHHHHHHHHhCCCE-EEEEec
Confidence 4566665 59999999999999999997654433 666665
No 238
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=21.23 E-value=1.2e+02 Score=23.99 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcccc
Q 026127 86 VESFRPVVAAMMDLPMPTVAAVNGHA 111 (243)
Q Consensus 86 ~~~~~~~~~~l~~~~kp~Iaav~G~~ 111 (243)
...|.+.+..+.+++||+||.+|=..
T Consensus 116 s~~f~~~ve~vl~~~kpliatlHrrs 141 (179)
T COG1618 116 SKKFREAVEEVLKSGKPLIATLHRRS 141 (179)
T ss_pred cHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 34567788888999999999998553
No 239
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.21 E-value=2.8e+02 Score=21.28 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.++++.++ ... +|++|.
T Consensus 116 illlDEP----t~~LD~~~~~~l~~~l~~~~~~-g~t-iii~th 153 (173)
T cd03230 116 LLILDEP----TSGLDPESRREFWELLRELKKE-GKT-ILLSSH 153 (173)
T ss_pred EEEEeCC----ccCCCHHHHHHHHHHHHHHHHC-CCE-EEEECC
Confidence 3556655 5899999999999999999765 322 566655
No 240
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=20.98 E-value=2.6e+02 Score=23.26 Aligned_cols=40 Identities=10% Similarity=0.088 Sum_probs=29.8
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.+.|+.| .+.+|....+.+.+.+.++.++.... +|++|..
T Consensus 168 lllLDEP----t~~LD~~~~~~~~~~l~~l~~~~~~t-iii~sH~ 207 (265)
T PRK10575 168 CLLLDEP----TSALDIAHQVDVLALVHRLSQERGLT-VIAVLHD 207 (265)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCC
Confidence 4566655 59999999999999999987654433 6666664
No 241
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.97 E-value=3.8e+02 Score=23.64 Aligned_cols=58 Identities=9% Similarity=0.090 Sum_probs=36.3
Q ss_pred HHHhcCCCCeEEEEecCC--CcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 40 KAKAEATPGSALITTSHG--KFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 40 ~~~~d~~v~~~vvl~g~g--~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
.+++++.+..+||.-|.. ..|-.|.....+.. ....++|......+...+.+...||+
T Consensus 171 ~l~~~~~~a~vVV~lGaND~q~~~~gd~~~kf~S-------~~W~~eY~kRvd~~l~ia~~~~~~V~ 230 (354)
T COG2845 171 LLDKHPKPAAVVVMLGANDRQDFKVGDVYEKFRS-------DEWTKEYEKRVDAILKIAHTHKVPVL 230 (354)
T ss_pred HHHhcCCccEEEEEecCCCHHhcccCCeeeecCc-------hHHHHHHHHHHHHHHHHhcccCCcEE
Confidence 344566666455555543 67777765554443 56667777777888877777666653
No 242
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=20.93 E-value=2.7e+02 Score=22.52 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG 57 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g 57 (243)
.+-++.| .+.+|......+.+.+.++.+....- +|++|..-
T Consensus 153 llllDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-iii~sH~~ 193 (236)
T TIGR03864 153 LLLLDEP----TVGLDPASRAAIVAHVRALCRDQGLS-VLWATHLV 193 (236)
T ss_pred EEEEcCC----ccCCCHHHHHHHHHHHHHHHHhCCCE-EEEEecCh
Confidence 3556655 59999999999999999987543432 66666543
No 243
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=20.84 E-value=1.8e+02 Score=23.99 Aligned_cols=40 Identities=10% Similarity=0.098 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.+.++.| .+.+|.....++.+.+.++.++.... +|++|+.
T Consensus 172 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-ii~isH~ 211 (258)
T PRK11701 172 LVFMDEP----TGGLDVSVQARLLDLLRGLVRELGLA-VVIVTHD 211 (258)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHhcCcE-EEEEeCC
Confidence 3566655 59999999999999999887643433 6666653
No 244
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=20.47 E-value=3e+02 Score=21.63 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.+-++.| .+.+|....+.+.+.++++.++ ... +|++|..
T Consensus 155 llllDEP----t~~LD~~~~~~l~~~l~~~~~~-~~t-ii~~sh~ 193 (206)
T TIGR03608 155 LILADEP----TGSLDPKNRDEVLDLLLELNDE-GKT-IIIVTHD 193 (206)
T ss_pred EEEEeCC----cCCCCHHHHHHHHHHHHHHHhc-CCE-EEEEeCC
Confidence 3566655 5899999999999999998754 432 5666554
No 245
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.46 E-value=2.6e+02 Score=23.70 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=29.3
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g 55 (243)
.+.++.| .+.+|.....++.+.+.++.++.... +|++|.
T Consensus 166 llllDEP----t~~LD~~~~~~l~~~L~~l~~~~g~t-viiitH 204 (290)
T PRK13634 166 VLVLDEP----TAGLDPKGRKEMMEMFYKLHKEKGLT-TVLVTH 204 (290)
T ss_pred EEEEECC----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 3566655 59999999999999999997654443 666665
No 246
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=20.35 E-value=2.7e+02 Score=22.81 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=29.8
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.+.++.| .+.+|......+.+.+.++.++.... +|++|..
T Consensus 167 llllDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-iiivsH~ 206 (252)
T TIGR03005 167 VMLFDEV----TSALDPELVGEVLNVIRRLASEHDLT-MLLVTHE 206 (252)
T ss_pred EEEEeCC----cccCCHHHHHHHHHHHHHHHHhcCcE-EEEEeCC
Confidence 4667765 58999999999999999987653433 6666663
No 247
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=20.32 E-value=2.7e+02 Score=23.13 Aligned_cols=40 Identities=8% Similarity=0.033 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.+-++.| .+.+|......+.+.+.++.+..... +|++|..
T Consensus 164 llllDEP----t~gLD~~~~~~l~~~L~~l~~~~~~t-iii~tH~ 203 (265)
T PRK10253 164 IMLLDEP----TTWLDISHQIDLLELLSELNREKGYT-LAAVLHD 203 (265)
T ss_pred EEEEeCc----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCC
Confidence 3556655 59999999999999999987644433 6666654
No 248
>PF06935 DUF1284: Protein of unknown function (DUF1284); InterPro: IPR009702 This family consists of several hypothetical bacterial and archaeal proteins of around 130 residues in length. The function of this family is unknown, although it is thought that they may be iron-sulphur binding proteins.
Probab=20.24 E-value=2.4e+02 Score=20.08 Aligned_cols=30 Identities=7% Similarity=0.259 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
+|.++.+.+.+.++++.++++.. +-|++|.
T Consensus 2 YS~~Fv~Nm~~Iv~~l~~~~~~~-I~iv~~~ 31 (103)
T PF06935_consen 2 YSPEFVENMKKIVERLRNDPGEP-IEIVDGP 31 (103)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCC-EEEEECc
Confidence 67899999999999998788877 7777763
No 249
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=20.21 E-value=2.1e+02 Score=22.63 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=30.7
Q ss_pred CcEEEEEEcCCCCCCCC----CCCHHHHHHHHHH----HHHHHhcCCCCeEEEEecCCCcccCCCC
Q 026127 8 GDVFVLTLTGSSDVDEH----RFGPPAIDSILSA----IAKAKAEATPGSALITTSHGKFFSNGFD 65 (243)
Q Consensus 8 ~~v~~i~ln~p~~~~~N----~l~~~~~~~l~~~----l~~~~~d~~v~~~vvl~g~g~~F~~G~D 65 (243)
-|...|+++.| +.| .|+.+-+..+..+ +..+.+++.++.++++...| +-+|..
T Consensus 108 ~G~hEViIe~p---~h~~~~~~~~~~~~~~i~~a~~~r~~~l~~~~~~~yv~~FeN~G--~~~GaS 168 (183)
T PF01087_consen 108 YGAHEVIIESP---KHERTLADMSVKEIKEILKAWRDRYRELSSDKYIKYVLIFENEG--YEAGAS 168 (183)
T ss_dssp BEEEEEEES-S---STT--GGGS-HHHHHHHHHHHHHHHHHHCT-TT-SEEEEEEEES--GGGT-S
T ss_pred CCCeEEEEeCC---CCCCChhhCCHHHHHHHHHHHHHHHHHHhccCCcceEEEEEecC--CcCCCC
Confidence 36779999999 555 4565555555554 55566788899777777644 344443
No 250
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=20.20 E-value=2.1e+02 Score=23.53 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=29.4
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~ 56 (243)
.+.++.| .+.+|......+.+.+.++.+..... +|++|..
T Consensus 174 llllDEP----t~~LD~~~~~~l~~~L~~~~~~~~~t-ii~~sH~ 213 (255)
T PRK11300 174 ILMLDEP----AAGLNPKETKELDELIAELRNEHNVT-VLLIEHD 213 (255)
T ss_pred EEEEcCC----ccCCCHHHHHHHHHHHHHHHhhcCCE-EEEEeCC
Confidence 3556654 69999999999999999987643433 6666664
Done!