BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026129
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 88/134 (65%)
Query: 105 NKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLG 164
N+ F R ++++ +T + G G+ DIK+GEFV EYVGE+ID++ C R+ +
Sbjct: 83 NQCFSKRQYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVGELIDEEECRARIRYAQEHD 142
Query: 165 ETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGE 224
TNFY+ +++D +IDA KGN +R++NH C PN E QKW ++G+TR+G+FA DIK G
Sbjct: 143 ITNFYMLTLDKDRIIDAGPKGNYARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGT 202
Query: 225 NLTYDYQYEFLHDS 238
LT++Y E L +
Sbjct: 203 ELTFNYNLECLGNG 216
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 101/197 (51%), Gaps = 7/197 (3%)
Query: 44 YVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSG-------VCDRDCHXXXXXXXXXXX 96
+ I+ N+YLT+R K + D C +P S C DC
Sbjct: 40 FDLIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQGEIACGEDCLNRLLMIECSSR 99
Query: 97 XXXXXXXXNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEER 156
N+ FQ + ++++ TEK G G+ A +D+ FV+EY GEV+D + + R
Sbjct: 100 CPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKAR 159
Query: 157 LWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFA 216
+ + ++Y + D +IDAT KGN SR++NHSC PN E QKW ++G+ R+G F
Sbjct: 160 VKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFT 219
Query: 217 TRDIKKGENLTYDYQYE 233
T+ + G LT+DYQ++
Sbjct: 220 TKLVPSGSELTFDYQFQ 236
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 78/120 (65%), Gaps = 1/120 (0%)
Query: 113 VKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCE 172
V+ ++ + E+ G GI E +K G+F+IEY+GEV+ +Q R+ + H ++ Y
Sbjct: 73 VQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVVSEQEFRNRMIEQYH-NHSDHYCLN 131
Query: 173 INRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQY 232
++ MVID+ GN++R+INHSC PN EMQKW ++G RIG++A +D+ G LTYDY +
Sbjct: 132 LDSGMVIDSYRMGNEARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNF 191
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 63/110 (57%), Gaps = 5/110 (4%)
Query: 125 GAGIVADEDIKRGEFVIEYVGEVIDDQTCE--ERLWKMKHLGETNFYLCEINRDMVIDAT 182
G G+ +I GE VIEY G VI + E+ + K +G Y+ I+ V+DAT
Sbjct: 63 GRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDSKGIG---CYMFRIDDSEVVDAT 119
Query: 183 YKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQY 232
GN +R+INHSC PN + IDG+ I IFA R I +GE LTYDY++
Sbjct: 120 MHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKF 169
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 125 GAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRD-MVIDATY 183
G G+ IKR FV+EYVGEVI + E R + G T + + D +DA
Sbjct: 152 GWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQFYDNKGITYLFDLDYESDEFTVDAAR 211
Query: 184 KGNKSRYINHSCCPNTEMQKWIIDG----ETRIGIFATRDIKKGENLTYDYQ 231
GN S ++NHSC PN ++ ID RI +F+TR I GE LT+DYQ
Sbjct: 212 YGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQ 263
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 16/138 (11%)
Query: 105 NKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLG 164
N+ QN +++L +T G G+ + +DI G FV EYVGE+I D + R
Sbjct: 138 NRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR-------- 189
Query: 165 ETNFYLCEI-NRD---MVIDATYKGNKSRYINHSCCPNTEMQKWIIDGE----TRIGIFA 216
E + YL ++ N+D IDA + GN SR+INH C PN + + + RI F+
Sbjct: 190 EEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFS 249
Query: 217 TRDIKKGENLTYDYQYEF 234
TR I+ GE L +DY F
Sbjct: 250 TRLIEAGEQLGFDYGERF 267
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 16/138 (11%)
Query: 105 NKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLG 164
N+ QN +++L +T G G+ + +DI G FV EYVGE+I D + R
Sbjct: 136 NRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR-------- 187
Query: 165 ETNFYLCEI-NRD---MVIDATYKGNKSRYINHSCCPNTEMQKWIIDGE----TRIGIFA 216
E + YL ++ N+D IDA + GN SR+INH C PN + + + RI F+
Sbjct: 188 EEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFS 247
Query: 217 TRDIKKGENLTYDYQYEF 234
TR I+ GE L +DY F
Sbjct: 248 TRLIEAGEQLGFDYGERF 265
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 16/138 (11%)
Query: 105 NKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLG 164
N+ QN +++L +T G G+ + +DI G FV EYVGE+I D + R
Sbjct: 112 NRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR-------- 163
Query: 165 ETNFYLCEI-NRD---MVIDATYKGNKSRYINHSCCPNTEMQKWIIDGE----TRIGIFA 216
E + YL ++ N+D IDA + GN SR+INH C PN + + + RI F+
Sbjct: 164 EEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFS 223
Query: 217 TRDIKKGENLTYDYQYEF 234
TR I+ GE L +DY F
Sbjct: 224 TRLIEAGEQLGFDYGERF 241
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 16/138 (11%)
Query: 105 NKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLG 164
N+ Q+ +++L +T K G G+ A + I +G F+ EYVGE+I D + R
Sbjct: 119 NRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVR-------- 170
Query: 165 ETNFYLCEI-NRD---MVIDATYKGNKSRYINHSCCPN-TEMQKWIIDGET---RIGIFA 216
E + YL ++ N+D IDA Y GN SR+INH C PN ++ +++ + RI F+
Sbjct: 171 EDDSYLFDLDNKDGEVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFS 230
Query: 217 TRDIKKGENLTYDYQYEF 234
+RDI+ GE L +DY F
Sbjct: 231 SRDIRTGEELGFDYGDRF 248
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 16/138 (11%)
Query: 105 NKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLG 164
N+ Q+ +++L +T K G G+ A + I +G F+ EYVGE+I D + R
Sbjct: 117 NRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVR-------- 168
Query: 165 ETNFYLCEI-NRD---MVIDATYKGNKSRYINHSCCPN-TEMQKWIIDGET---RIGIFA 216
E + YL ++ N+D IDA Y GN SR+INH C PN ++ +++ + RI F+
Sbjct: 169 EDDSYLFDLDNKDGEVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFS 228
Query: 217 TRDIKKGENLTYDYQYEF 234
+RDI+ GE L +DY F
Sbjct: 229 SRDIRTGEELGFDYGDRF 246
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 16/138 (11%)
Query: 105 NKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLG 164
N+ QN +++L +T G G+ + +DI G FV EYVGE+I D + R
Sbjct: 137 NRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR-------- 188
Query: 165 ETNFYLCEI-NRD---MVIDATYKGNKSRYINHSCCPNTEMQKWIIDGE----TRIGIFA 216
E + YL ++ N+D IDA + GN SR+INH C PN + + + RI F+
Sbjct: 189 EEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFS 248
Query: 217 TRDIKKGENLTYDYQYEF 234
TR I+ GE L +D F
Sbjct: 249 TRLIEAGEQLGFDAGERF 266
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 16/147 (10%)
Query: 109 QNRPVKK-----MKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHL 163
+NR V+K ++ +T K G G+ E I +G FV EY GEV+ + R+ ++
Sbjct: 116 RNRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQRRI-HLQTK 174
Query: 164 GETNFYLCEINR--------DMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGET-RIGI 214
++N Y+ I + +D TY GN R++NHSC PN M ID ++ +
Sbjct: 175 SDSN-YIIAIREHVYNGQVMETFVDPTYIGNIGRFLNHSCEPNLLMIPVRIDSMVPKLAL 233
Query: 215 FATRDIKKGENLTYDYQYEFLHDSLIA 241
FA +DI E L+YDY +L+ ++ A
Sbjct: 234 FAAKDIVPEEELSYDYSGRYLNLTVSA 260
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 116 MKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVID--DQTCEERLWKMK-HLGETNFYLCE 172
MK+ + G G++A + RG+FV+EY G++I+ D E L+ G +Y
Sbjct: 27 MKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQY 86
Query: 173 INRDMVIDATYKGNK-SRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230
+++ +DAT + N+ R INHS C N + + IDG + + A+RDI GE L YDY
Sbjct: 87 LSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 145
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 116 MKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVID--DQTCEERLWKMK-HLGETNFYLCE 172
MK+ + G G++A + RG+FV+EY G++I+ D E L+ G +Y
Sbjct: 33 MKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQY 92
Query: 173 INRDMVIDATYKGNK-SRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230
+++ +DAT + N+ R INHS C N + + IDG + + A+RDI GE L YDY
Sbjct: 93 LSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 151
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 116 MKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVID--DQTCEERLWKMK-HLGETNFYLCE 172
MK+ + G G++A + RG+FV+E+ G++I+ D E L+ G +Y
Sbjct: 32 MKIDLIDGKGRGVIATKQFSRGDFVVEFHGDLIEITDAKKREALYAQDPSTGCYMYYFQY 91
Query: 173 INRDMVIDATYKGNK-SRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230
+++ +DAT + N+ R INHS C N + + IDG + + A+RDI GE L YDY
Sbjct: 92 LSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 150
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 116 MKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVID--DQTCEERLWKMK-HLGETNFYLCE 172
MK+ + G G++A + RG+FV+EY G++I+ D E L+ G +Y
Sbjct: 32 MKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQY 91
Query: 173 INRDMVIDATYKGNK-SRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230
+++ +DAT + N+ R INHS C N + + IDG + + A+RDI GE L +DY
Sbjct: 92 LSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDY 150
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 4/119 (3%)
Query: 116 MKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVID--DQTCEERLWKMK-HLGETNFYLCE 172
MK+ + G G++A + RG+FV+EY G++I+ D E L+ G +Y
Sbjct: 31 MKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQY 90
Query: 173 INRDMVIDATYKGNK-SRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230
+++ +DAT + N+ R INHS N + + IDG + + A+RDI GE L YDY
Sbjct: 91 LSKTYCVDATRETNRLGRLINHSKSGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 149
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 18/133 (13%)
Query: 116 MKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINR 175
+++ +T+ G G+ +IKRG+FV Y+GE+I + + R + + YL +++
Sbjct: 135 LQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALDK 194
Query: 176 --------------DMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETR----IGIFAT 217
+ +D Y +R+INHSC PN + + D + + +FA
Sbjct: 195 FSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLALFAI 254
Query: 218 RDIKKGENLTYDY 230
+DI KG LT+DY
Sbjct: 255 KDIPKGTELTFDY 267
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 7/133 (5%)
Query: 105 NKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLG 164
N+ Q +++ +T++ G G+ + G F+ Y+GEVI +R G
Sbjct: 128 NRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDG 187
Query: 165 ETNFYLCEINRDM---VIDATYKGNKSRYINHSCCPNTEMQKWIIDGETR----IGIFAT 217
T + ++ D +DA G+ SR+ NHSC PN + + + R + FA
Sbjct: 188 ITYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAI 247
Query: 218 RDIKKGENLTYDY 230
+DI+ E LT+DY
Sbjct: 248 KDIQPLEELTFDY 260
>pdb|3IZ6|M Chain M, Localization Of The Small Subunit Ribosomal Proteins
Into A 5.5 A Cryo-Em Map Of Triticum Aestivum
Translating 80s Ribosome
Length = 152
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 17 FNKLLKQIGNPVEFELPDWFIKPK 40
++L+ + NP +F++PDWF+ K
Sbjct: 64 MDRLMAVVHNPRQFKVPDWFLNRK 87
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 191 INHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230
+NHSC PN I+ + + A RDI+ GE LT Y
Sbjct: 206 LNHSCDPNCS----IVFNGPHLLLRAVRDIEVGEELTICY 241
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 191 INHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230
+NHSC PN I+ + + A RDI+ GE LT Y
Sbjct: 204 LNHSCDPNCS----IVFNGPHLLLRAVRDIEVGEELTICY 239
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 191 INHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230
+NHSC PN I+ + + A RDI+ GE LT Y
Sbjct: 204 LNHSCDPNCS----IVFNGPHLLLRAVRDIEVGEELTICY 239
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 191 INHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230
+NHSC PN I+ + + A RDI+ GE LT Y
Sbjct: 205 LNHSCDPNCS----IVFNGPHLLLRAVRDIEVGEELTICY 240
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 191 INHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230
+NHSC PN I+ + + A RDI+ GE LT Y
Sbjct: 240 LNHSCDPNCS----IVFNGPHLLLRAVRDIEVGEELTICY 275
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 191 INHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230
+NHSC PN I+ + + A RDI+ GE LT Y
Sbjct: 205 LNHSCDPNCS----IVFNGPHLLLRAVRDIEVGEELTICY 240
>pdb|3ODH|A Chain A, Structure Of OkraiDNA COMPLEX
pdb|3ODH|B Chain B, Structure Of OkraiDNA COMPLEX
pdb|3ODH|E Chain E, Structure Of OkraiDNA COMPLEX
pdb|3ODH|F Chain F, Structure Of OkraiDNA COMPLEX
Length = 194
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 172 EINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRI 212
E N VI+ KGN + I +SC + + W ++ RI
Sbjct: 36 EGNNSFVINPVRKGNGVKPIKNSCMRHLHQKGWALEHPVRI 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,097,401
Number of Sequences: 62578
Number of extensions: 281475
Number of successful extensions: 580
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 531
Number of HSP's gapped (non-prelim): 27
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)